LOCUS Tet.t.ref 4557 bp RNA RNA 28-JAN-191 DEFINITION Tetrahymena thermophila. ACCESSION No information KEYWORDS No information. SOURCE Tetrahymena thermophila. ORGANISM Tetrahymena thermophila. REFERENCE 1 AUTHORS Kan,N.C. and Gall,J.G. TITLE The intervening sequence of the ribosomal rna gene is highly... JOURNAL Nucleic Acids Res. 10, 2809-2822 (1982) STANDARD No information COMMENTS Sequence information (bases 1 to 4557) Corresponding GenBank entry: DIVIDER J01235 BASE COUNT 128 a 78 c 110 g 110 t 4131 others ORIGIN 1 |~~~~~~~~~ ~~~U||aaa- -------(-- ---uagcaau auuuacc--- ---------- 61 ---------- ---------- --)------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- ---------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 -------|-- --uuu|Ggag gg--|----- ---------a aa-|AGUuau cagg------ 781 ---------- ---------- --------(c augca----- ---------- ---------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---ccug-g- 961 ----u--aGC U|--A----- -----|GUC- UU-------- ua-aacc--- -----a---- 1021 au(aga---- ---------- ---------- ---------u ugc------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 ---------- ---------- ---------- ---------- ---------- ---------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- ---------- -)-------- --a-uc---- 1561 ---------- ---------- ---------- ---------- ---------- ---------- 1621 ----gguuua --Aa-AGGC| --AA|GACC- G-U-C|AAAU |UG--C-GGG |AAAG----| 1681 G-GG------ ---------- ---------- -|Uca----- ---------- ---------- 1741 ---------- ---------- ---------- ---------- --------AC AG|------C 1801 CG-u------ UC-AG|U-AC C|-------- ---------- ---------- ---------- 1861 ---|AAG-U- CU-C-A---- -G-GG-(GAA A--------- ---------- ---------- 1921 ---------- -)-CUU--UG --A-G-A-U- G-G|----|C C-U------- (UGCAA---- 1981 ---------- --------)- -----A--G- G|-------G UA-U|GGU-A AUA-AG-CU- 2041 GA--C-GG-| -acaugg--- ------|--- ---------- ---------- ---------- 2101 ---------- ---------- ---------- -|-------- ---------- ---------- 2161 ---------- ---------- ---------- --UCC|-UAA -|CCACGCA| GCC|-AA--- 2221 |GUCC----- ------(--- ---------- ---------- ---------- ---------- 2281 ---------- ----)|-|U| AA----|guc aacag----- ---------- ---------- 2341 (a-ucu-u-- ---------- ---------- ---------- ---------- ---------- 2401 -------)|- --[------- ---------- ---------- ---------- -------|-- 2461 ---cugu-ug au-|A|U|-- ---------- GGAU|--GC| AGU|--UCA| CA-GACU-A| 2521 -AAU|GUC-G --G-UC|G|G GGaaga---- ---------- -(uguau--- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------) ---------- 2701 -ucuuCUCA- |UAA-GA-UA |UA-GUC|G| -|GA-----| ccu--|cucc u--------- 2761 ----(-UAAU ---------- )--------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---------- ---------- 2881 --|------- -g--g-g-a- g|-------- --|-cuagcg g--------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- -|----auga ---|agug-- ----(--aug 3121 caa------- ---------- ---------- ---------- ---------- ---------- 3181 ---------- ---------- -----)---- --cacu|--- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ---------- ---------- ---------- ---------- ---------- ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- --|---gga- g--|------ ---------- ------ccgc 4021 ugg|------ ----g---|a acua-auuug uaugc----- ---------- ---------( 4081 gaaa------ ---------- ---------- ---------- ---------- ---------- 4141 -)-------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- --------|- guauauugau u-aguu|--- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------| --uuggagua c--------| -----UC|G- -||uaa-ggu agccaa| // LOCUS mask 4557 bp RNA RNA ~?~???? DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 0 a 563 c 0 g 0 t 3994 others ORIGIN 1 |EEEEEEEEE EEEE||xxxx xxxxxxx(VV VVVVVVVVVV VVVVVVVVVV VVVVVVVVVV 61 VVVVVVVVVV VVVVVVVVVV VVVVVVVVVV VVVVVVVVVV VVVVVVVVVV VVVVVVVVVV 121 VVVVVVVVVV VVVVVVVVVV VVVVVVVVVV VVVVVVVVVV VVVVVVVVVV VVVVVVVVVV 181 VVVVVVVVVV VVVVVVVVVV VVVVVVVVVV VVVVVVVVVV VVVVVVVVVV VVVVVVVVVV 241 VVVVVVVVVV VVVVVVVVVV VVVVVVVVVV VVVVVVVVVV VVVVVVVVVV VVVVVVVVVV 301 VVVVVVVVVV VVVVVVVVVV VVVVVVVVVV VVVVVVVVVV VVVVVVVVVV VVVVVVVVVV 361 VVVVVVVVVV VVVVVVVVVV VVVVVVVVVV VVVVVVVVVV VVVVVVVVVV VVVVVVVVVV 421 VVVVVVVVVV VVVVVVVVVV VVVVVVVVVV VVVVVVVVVV VVVVVVVVVV VVVVVVVVVV 481 VVVVVVVVVV VVVVVVVVVV VVVVVVVVVV VVVVVVVVVV VVVVVVVVVV VVVVVVVVVV 541 VVVVVVVVVV VVVVVVVVVV VVVVVVVVVV VVVVVVVVVV VVVVVVVVVV VVVVVVVVVV 601 VVVVVVVVVV VVVVVVVVVV VVVVVVVVVV VVVVVVVVVV VVVVVVVVVV VVVVVVVVVV 661 VVVVVVVVVV VVVVVVVVVV VVVVVVVVVV VVVVVVVVVV VVVVVVVVVV VVVVVVVVVV 721 VVVVVVV|xx xxxxx|xxxx xxVV|VVVVV VVVVVVVVVV VVV|xxxVVV VVVVVVVVVV 781 VVVVVVVVVV VVVVVVVVVV VVVVVVVV(V VVVVVVVVVV VVVVVVVVVV VVVVVVVVVV 841 VVVVVVVVVV VVVVVVVVVV VVVVVVVVVV VVVVVVVVVV VVVVVVVVVV VVVVVVVVVV 901 VVVVVVVVVV VVVVVVVVVV VVVVVVVVVV VVVVVVVVVV VVVVVVVVVV VVVVVVVVVV 961 VVVVVVVVxx x|VVVVVVVV VVVVV|xxxV VVVVVVVVVV VVVVVVVVVV VVVVVVVVVV 1021 VV(VVVVVVV VVVVVVVVVV VVVVVVVVVV VVVVVVVVVV VVVVVVVVVV VVVVVVVVVV 1081 VVVVVVVVVV VVVVVVVVVV VVVVVVVVVV VVVVVVVVVV VVVVVVVVVV VVVVVVVVVV 1141 VVVVVVVVVV VVVVVVVVVV VVVVVVVVVV VVVVVVVVVV VVVVVVVVVV VVVVVVVVVV 1201 VVVVVVVVVV VVVVVVVVVV VVVVVVVVVV VVVVVVVVVV VVVVVVVVVV VVVVVVVVVV 1261 VVVVVVVVVV VVVVVVVVVV VVVVVVVVVV VVVVVVVVVV VVVVVVVVVV VVVVVVVVVV 1321 VVVVVVVVVV VVVVVVVVVV VVVVVVVVVV VVVVVVVVVV VVVVVVVVVV VVVVVVVVVV 1381 VVVVVVVVVV VVVVVVVVVV VVVVVVVVVV VVVVVVVVVV VVVVVVVVVV VVVVVVVVVV 1441 VVVVVVVVVV VVVVVVVVVV VVVVVVVVVV VVVVVVVVVV VVVVVVVVVV VVVVVVVVVV 1501 VVVVVVVVVV VVVVVVVVVV VVVVVVVVVV VVVVVVVVVV V)VVVVVVVV VVVVVVVVVV 1561 VVVVVVVVVV VVVVVVVVVV VVVVVVVVVV VVVVVVVVVV VVVVVVVVVV VVVVVVVVVV 1621 VVVVVVVVVV VVVVVVxxx| xxxx|xxxxx xxxxx|xxxx |xxxxxxxxx |xxxxxxxx| 1681 xxxxeeeeee eeeeeeeeee eeeeeeeeee e|cccccccc cccccccccc cccccccccc 1741 cccccccccc cccccccccc cccccccccc cccccccccc cccccccccc cc|ccccccc 1801 cccccccccc ccccc|cccc c|eeeeeeee eeeeeeeeee eeeeeeeeee eeeeeeeeee 1861 eee|cccccc cccccccccc cccccc(ccc cccccccrrr (rrrrr)rrr rrrrrrrr(r 1921 rrr)rrrrrr r)cccccccc cccccccccc ccc|cccc|c cccccccccc (ccccccccc 1981 cccccccccc cccccccc)c cccccccccc c|cccccccc cccc|ccccc cccccccccc 2041 ccccccccc| cccccccccc cccccc|ccc cccccccccc cccccccccc cccccccccc 2101 cccccccccc cccccccccc cccccccccc c|cccccccc cccccccccc cccccccccc 2161 cccccccccc cccccccccc cccccccccc ccxxx|xxxx x|xxxxxxx| xxx|xxxxxx 2221 |xxxVVVVVV VVVVVV(VVV VVVVVVVVVV VVVVVVVVVV VVVVVVVVVV VVVVVVVVVV 2281 VVVVVVVVVV VVVV)|V|c| cccccc|ccc cccccccccc cccccccccc cccccccccc 2341 (ccccccccc cccccccccc cccccccccc cccccccccc cccccccccc cccccccccc 2401 ccccccc)cc cccccccccc cccccccccc cccccccccc cccccccccc ccccccc|cc 2461 cccccccccc ccc|c|c|cV VVVVVVVVVV Vxxx|xxxx| xxx|xxxxx| xxxxxxxxx| 2521 xxxx|xxxxx xxxxxx|x|x xxxxxxVVVV VVVVVVVVVV V(VVVVVVVV VVVVVVVVVV 2581 VVVVVVVVVV VVVVVVVVVV VVVVVVVVVV VVVVVVVVVV VVVVVVVVVV VVVVVVVVVV 2641 VVVVVVVVVV VVVVVVVVVV VVVVVVVVVV VVVVVVVVVV VVVVVVVVV) VVVVVVVVVV 2701 Vxxxxxxxxx |xxxxxxxxx |xxxxxx|x| x|xxxxxxx| xxxxx|xxxx xVVVVVVVVV 2761 VV-V(VVVVV VVVVVVVVVV )VVVVVVVVV VVVVVVVVVV VVVVVVVVVV VVVVVVVVVV 2821 VVVVVVVVVV VVVVVVVVVV VVVVVVVVVV VVVVVVVVVV VVVVVVVVVV VVVVVVVVVV 2881 VV|VVVVVVV Vxxxx-xxxx x|xxxxxxxx xx|xxxxxxx xVVVVVVVVV VVVVVVVVVV 2941 VVVVVVVVVV VVVVVVVVVV VVVVVVVVVV VVVVVVVVVV VVVVVVVVVV VVVVVVVVVV 3001 VVVVVVVVVV VVVVVVVVVV VVVVVVVVVV VVVVVVVVVV VVVVVVVVVV VVVVVVVVVV 3061 VVVVVVVVVV VVVVVVVVVV VVVVVVVVVV V|VVVVVVVV VVV|xxxxVV VVVV(VVVVV 3121 VVVVVVVVVV VVVVVVVVVV VVVVVVVVVV VVVVVVVVVV VVVVVVVVVV VVVVVVVVVV 3181 VVVVVVVVVV VVVVVVVVVV VVVVV)VVVV VVxxxx|VVV VVVVVVVVVV VVVVVVVVVV 3241 VVVVVVVVVV VVVVVVVVVV VVVVVVVVVV VVVVVVVVVV VVVVVVVVVV VVVVVVVVVV 3301 VVVVVVVVVV VVVVVVVVVV VVVVVVVVVV VVVVVVVVVV VVVVVVVVVV VVVVVVVVVV 3361 VVVVVVVVVV VVVVVVVVVV VVVVVVVVVV VVVVVVVVVV VVVVVVVVVV VVVVVVVVVV 3421 VVVVVVVVVV VVVVVVVVVV VVVVVVVVVV VVVVVVVVVV VVVVVVVVVV VVVVVVVVVV 3481 VVVVVVVVVV VVVVVVVVVV VVVVVVVVVV VVVVVVVVVV VVVVVVVVVV VVVVVVVVVV 3541 VVVVVVVVVV VVVVVVVVVV VVVVVVVVVV VVVVVVVVVV VVVVVVVVVV VVVVVVVVVV 3601 VVVVVVVVVV VVVVVVVVVV VVVVVVVVVV VVVVVVVVVV VVVVVVVVVV VVVVVVVVVV 3661 VVVVVVVVVV VVVVVVVVVV VVVVVVVVVV VVVVVVVVVV VVVVVVVVVV VVVVVVVVVV 3721 VVVVVVVVVV VVVVVVVVVV VVVVVVVVVV VVVVVVVVVV VVVVVVVVVV VVVVVVVVVV 3781 VVVVVVVVVV VVVVVVVVVV VVVVVVVVVV VVVVVVVVVV VVVVVVVVVV VVVVVVVVVV 3841 VVVVVVVVVV VVVVVVVVVV VVVVVVVVVV VVVVVVVVVV VVVVVVVVVV VVVVVVVVVV 3901 VVVVVVVVVV VVVVVVVVVV VVVVVVVVVV VVVVVVVVVV VVVVVVVVVV VVVVVVVVVV 3961 VVVVVVVVVV VVVVVVVVVV VV|VVVVVVV VVV||||||| |||||VVVVV VVVVVVxxxx 4021 xxx|xxx--- ----xxxx|x xxxVVVVVVV VVVVVVVVVV VVVVVVVVVV VVVVVVVVV( 4081 VVVVVVVVVV VVVVVVVVVV VVVVVVVVVV VVVVVVVVVV VVVVVVVVVV VVVVVVVVVV 4141 V)VVVVVVVV VVVVVVVVVV VVVVVVVVVV VVVVVVVVVV VVVVVVVVVV VVVVVVVVVV 4201 VVVVVVVVVV VVVVVVVV|V VVVVVVVVVV VVxxxx|VVV VVVVVVVVVV VVVVVVVVVV 4261 VVVVVVVVVV VVVVVVVVVV VVVVVVVVVV VVVVVVVVVV VVVVVVVVVV VVVVVVVVVV 4321 VVVVVVVVVV VVVVVVVVVV VVVVVVVVVV VVVVVVVVVV VVVVVVVVVV VVVVVVVVVV 4381 VVVVVVVVVV VVVVVVVVVV VVVVVVVVVV VVVVVVVVVV VVVVVVVVVV VVVVVVVVVV 4441 VVVVVVVVVV VVVVVVVVVV VVVVVVVVVV VVVVVVVVVV VVVVVVVVVV VVVVVVVVVV 4501 VVVVVVVVV| VVVVVVVVVV VVVVVVVVV| VVVVVxx|xV V||EEEEEEE EEEEEE| // LOCUS IC1 4557 bp RNA RNA 26-JAN-1993 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 4557) Corresponding GenBank entry: DIVIDER BASE COUNT 0 a 0 c 0 g 0 t 4557 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- -----|---- ---------- ---------- ---------- ---------- 301 ---------| --|------- ---||||||| |||||||||~ |......... .......... 361 .......... .......... .......... .......... .......... .......... 421 .......... .......... .......... .......... .......... .......... 481 .......... .......... .......... .......... .......... .......... 541 .......... .......... .......... .......... .......... .......... 601 .......... .......... .......... .......... .......... .......... 661 .......... .......... .......... .......... .......... .......... 721 .......... .......... ....|..... .......... ..-....... .......... 781 .......... .......... .......... .......... .......... .......... 841 .......... .......... .......... .......... .......... .......... 901 .......... .......... .......... .......... .......... .......... 961 .......... ..--...... .......... .......... .......... .......... 1021 .......... .......... .......... .......... .......... .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .......... .......... .......... .......... .......... 1201 .......... .......... .......... .......... .......... .......... 1261 .......... .......... .......... .......... .......... .......... 1321 .......... .......... .......... .......... .......... .......... 1381 .......... .......... .......... .......... .......... .......... 1441 .......... .......... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... .......... .......... .......... .......... .......... 1621 .......... .......... .......... .......... ......-... ......---. 1681 ....------ ---------- ---------- -......... .......... .......... 1741 .......... .......... .......... .......... .......... .......... 1801 .......... .......... ...------- ---------- ---------- ---------- 1861 ---....... .......... .......... .......... .......... .......... 1921 .......... .......... .......... .......... .......-.. .......... 1981 .......... .......... .......... .|........ .......... .......... 2041 .......... -......... .......... .......... .......... .......... 2101 .......... ....-..... .......... .......... .......... .......... 2161 .......... .......... .......... .......... .......... ....-..... 2221 .......... ....--(... .......... .......... .......... .......... 2281 .......... ....)|.|.| .......... .......... .......... .......... 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......-.. .......|.- -......... .......... .......... .......... 2521 ........-. ...-...... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... -......... 2701 .........- .......... .......... .......... .......... .......... 2761 .......... .......--- .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... .......... 2881 .......... ..--...... .......... .......... .......... .......... 2941 .......... .......... .......... .......... .......... .......... 3001 .......... .......... .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .....--... 3121 .......... .......... .......... .......... .......... .......... 3181 .......... .......... .......... .......... .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .......... .......... .......... 3361 .......... .......... .......... .......... .......... .......... 3421 .......... .......... .......... .......... .......... .......... 3481 .......... .......... .......... .......... .......... .......... 3541 .......... .......... .......... .......... .......... .......... 3601 .......... .......... .......... .......... .......... .......... 3661 .......... .......... .......... .......... .......... .......... 3721 .......... .......... .......... .......... .......... .......... 3781 .......... .......... .......... .......... .......... .......... 3841 .......... .......... .......... .......... .......... .......... 3901 .......... .......... .......... .......... .......... .......... 3961 .......... .......... .......... .--....... .......... ...---.... 4021 ....---... .......... .......... .....----- ---------- ---------. 4081 .......... .......... .......... .......... .......... .......... 4141 .......... .......... .......... .......... .......... .......... 4201 .......... .......... .......... .......... .......... .......... 4261 .......... .......... .......... .......... .......... ......---- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 --------.. --........ .......... .........- -.....-... ......| // LOCUS C1-S-40 4557 bp RNA RNA ~?~???? DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 4557) Corresponding GenBank entry: DIVIDER BASE COUNT 0 a 0 c 0 g 0 t 4557 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- -----|---- ---------- ---------- ---------- ---------- 301 ---------| --|------- ---||||||| |||||||||~ |......... .......... 361 .......... .......... .......... .......... .......... .......... 421 .......... .......... .......... .......... .......... .......... 481 .......... .......... .......... .......... .......... .......... 541 .......... .......... .......... .......... .......... .......... 601 .......... .......... .......... .......... .......... .......... 661 .......... .......... .......... .......... .......... .......... 721 .......... .......... ....|..... .......... ..-....... .......... 781 .......... .......... .......... .......... .......... .......... 841 .......... .......... .......... .......... .......... .......... 901 .......... .......... .......... .......... .......... .......... 961 .......... ..--...... .......... .......... .......... .......... 1021 .......... .......... .......... .......... .......... .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .......... .......... .......... .......... .......... 1201 .......... .......... .......... .......... .......... .......... 1261 .......... .......... .......... .......... .......... .......... 1321 .......... .......... .......... .......... .......... .......... 1381 .......... .......... .......... .......... .......... .......... 1441 .......... .......... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... .......... .......... .......... .......... .......... 1621 .......... .......... .......... .......... ......-... ......---. 1681 ....------ ---------- ---------- -......... .......... .......... 1741 .......... .......... .......... .......... .......... .......... 1801 .......... .......... ...------- ---------- ---------- ---------- 1861 ---....... .......... .......... .......... .......... .......... 1921 .......... .......... .......... .......... .......-.. .......... 1981 .......... .......... .......... .|........ .......... .......... 2041 .......... -......... .......... .......... .......... .......... 2101 .......... ....-..... .......... .......... .......... .......... 2161 .......... .......... .......... .......... .......... ....-..... 2221 .......... ....--(... .......... .......... .......... .......... 2281 .......... ....)|.|.| .......... .......... .......... .......... 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......-.. .......|.- -......... .......... .......... .......... 2521 ........-. ...-...... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... -......... 2701 .........- .......... .......... .......... .......... .......... 2761 .......... .......--- .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... .......... 2881 .......... ..--...... .......... .......... .......... .......... 2941 .......... .......... .......... .......... .......... .......... 3001 .......... .......... .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .....--... 3121 .......... .......... .......... .......... .......... .......... 3181 .......... .......... .......... .......... .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .......... .......... .......... 3361 .......... .......... .......... .......... .......... .......... 3421 .......... .......... .......... .......... .......... .......... 3481 .......... .......... .......... .......... .......... .......... 3541 .......... .......... .......... .......... .......... .......... 3601 .......... .......... .......... .......... .......... .......... 3661 .......... .......... .......... .......... .......... .......... 3721 .......... .......... .......... .......... .......... .......... 3781 .......... .......... .......... .......... .......... .......... 3841 .......... .......... .......... .......... .......... .......... 3901 .......... .......... .......... .......... .......... .......... 3961 .......... .......... .......... .--....... .......... ...---.... 4021 ....---... .......... .......... .....----- ---------- ---------. 4081 .......... .......... .......... .......... .......... .......... 4141 .......... .......... .......... .......... .......... .......... 4201 .......... .......... .......... .......... .......... .......... 4261 .......... .......... .......... .......... .......... ......---- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 --------.. --........ .......... .........- -.....-... ......| // LOCUS Pse.p.1.1 4557 bp RNA RNA 28-JAN-191 DEFINITION Pseudodidymocystis planctonica. ACCESSION No information KEYWORDS No information. SOURCE Pseudodidymocystis planctonica. ORGANISM Pseudodidymocystis planctonica. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 4557) Corresponding GenBank entry: AB037087 LOCUS AB037087 3335 bp DNA PLN 18-JUL-2000 DEFINITION Pseudodidymocystis planctonica gene for 18S rRNA, complete sequence. ACCESSION AB037087 VERSION AB037087.1 GI:9279819 KEYWORDS 18S ribosomal RNA. SOURCE Pseudodidymocystis planctonica (strain:SAG 40.98) DNA. ORGANISM Pseudodidymocystis planctonica Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Chlorococcales; Scenedesmaceae; Pseudodidymocystis. REFERENCE 1 (sites) AUTHORS Hegewald,E. and Hanagata,N. TITLE Phylogenetic studies on Scenedesmaceae JOURNAL Unpublished (2000) REFERENCE 2 (bases 1 to 3335) AUTHORS Hanagata,N. TITLE Direct Submission JOURNAL Submitted (14-JAN-2000) to the DDBJ/EMBL/GenBank databases. Nobutaka Hanagata, The University of Tokyo, Research Center for Advanced Science and Technology; 4-6-1 Komaba, Meguro-ku, Tokyo 153-8904, Japan (E-mail:hanagata@bio.rcast.u-tokyo.ac.jp, Tel:81-3-5452-5320, Fax:81-3-5452-5320) FEATURES Location/Qualifiers source 1..3335 /organism="Pseudodidymocystis planctonica" /strain="SAG 40.98" /db_xref="taxon:113526" rRNA 1..3335 /product="18S rRNA" BASE COUNT 859 a 745 c 951 g 774 t 6 others BASE COUNT 113 a 98 c 128 g 81 t 4137 others ORIGIN 1 |~~~~~~~~~ ~~~~||---- ---------- uuuaggcaag u--------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- ---------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 ---------- ----u-gaaa gc--|----- ---------- -------acn ugu------- 781 ---------- ---------- ---------g aaaa------ ---------- ---------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------g 961 caagC--UGC n|--A----- -----|GUC- UC-------- cc-------- ---------- 1021 --(gcg---- ---------- ---------- ---------a aa-------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 ---------- ---------- ---------- ---------- ---------- ---------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- ---------- ---------- ---------- 1561 ---------- ---------- ---------- ---------- ---------- ---------- 1621 --------gg --g--AGGC| --GA|CACC- G-U-C|AAAU |UG--C-UCG |GACA----| 1681 U-CC------ ---------- ---------- -|cg-c---- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------A AG|------C 1801 UG-------- CU-GG|U-AC C|-------- ---------- ---------- ---------- 1861 ---|GUC-U- GU-U-G---- -G-GG-(GAA A--------- ---------- ---------- 1921 ---------- -)-CUC--CA --CUC-A-G- A-C|A---|C C-C-U-A-GG (GAAA----- 1981 ---------- --------)C UU-G-G--G- G|-------G UA-U|GGU-G ACA-AU-CC- 2041 AG--C-AG-| -auag----- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- --GGA|-UAA -|UG-AGCA| GCC|-AA--- 2221 |Gccc----- ------(--- ---------- ---------- ---------- ---------- 2281 ---------- ----)|-|U| AA----|guc uc-------- ---------- ---------- 2341 (u-cug-c-- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- -------|-- 2461 ------g-ag au-|A|C|-- ---------- GGGU|--GC| AGU|--UCA| CA-GACU-A| 2521 -AAU|GUC-G --G-UG|G|G ucuagcu--- ---------- -(ggaaa--- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 agcuaGGCU- |UAA-GANUA |UA-GUC|G| -|GU-----| ucc--|cnac a--------- 2761 ----(-GAGA ---------- )--------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---------- ---------- 2881 ---------- -u--g-u-g- g|-------- --|-cuuguc ag-------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- -|----agga a--|ggcgc- u---(--cua 3121 ag-------- ---------- ---------- ---------- ---------- ---------- 3181 ---------- ---------- -----)---a g-ugcu|--- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ---------- ---------- ---------- ---------- ---------- ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- --|-ggaga- g--|------ ---------- --c---ugac 4021 agg|------ --------|g accg-ugg-- ---------- ---------- ---------- 4081 -uaauacugc ccauc(gcga )gguggacag ggcuaggccg caggccc--- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- ---------- -------uca c-gguc|--- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------| -----gauca a--------| -----AC|G- -||cuc-aaa gauuaa| // LOCUS C1-S-156 4557 bp RNA RNA ~?~???? DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 4557) Corresponding GenBank entry: DIVIDER BASE COUNT 0 a 0 c 0 g 0 t 4557 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- -----|---- ---------- ---------- ---------- ---------- 301 ---------| --|------- ---||||||| |||||||||~ |......... .......... 361 .......... .......... .......... .......... .......... .......... 421 .......... .......... .......... .......... .......... .......... 481 .......... .......... .......... .......... .......... .......... 541 .......... .......... .......... .......... .......... .......... 601 .......... .......... .......... .......... .......... .......... 661 .......... .......... .......... .......... .......... .......... 721 .......... .......... ....|..... .......... ..-....... .......... 781 .......... .......... .......... .......... .......... .......... 841 .......... .......... .......... .......... .......... .......... 901 .......... .......... .......... .......... .......... .......... 961 .......... ..--...... .......... .......... .......... .......... 1021 .......... .......... .......... .......... .......... .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .......... .......... .......... .......... .......... 1201 .......... .......... .......... .......... .......... .......... 1261 .......... .......... .......... .......... .......... .......... 1321 .......... .......... .......... .......... .......... .......... 1381 .......... .......... .......... .......... .......... .......... 1441 .......... .......... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... .......... .......... .......... .......... .......... 1621 .......... .......... .......... .......... ......-... ......---. 1681 ....------ ---------- ---------- -......... .......... .......... 1741 .......... .......... .......... .......... .......... .......... 1801 .......... .......... ...------- ---------- ---------- ---------- 1861 ---....... .......... .......... .......... .......... .......... 1921 .......... .......... .......... .......... .......-.. .......... 1981 .......... .......... .......... .|........ .......... .......... 2041 .......... -......... .......... .......... .......... .......... 2101 .......... ....-..... .......... .......... .......... .......... 2161 .......... .......... .......... .......... .......... ....-..... 2221 .......... ....--(... .......... .......... .......... .......... 2281 .......... ....)|.|.| .......... .......... .......... .......... 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......-.. .......|.- -......... .......... .......... .......... 2521 ........-. ...-...... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... -......... 2701 .........- .......... .......... .......... .......... .......... 2761 .......... .......--- .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... .......... 2881 .......... ..--...... .......... .......... .......... .......... 2941 .......... .......... .......... .......... .......... .......... 3001 .......... .......... .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .....--... 3121 .......... .......... .......... .......... .......... .......... 3181 .......... .......... .......... .......... .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .......... .......... .......... 3361 .......... .......... .......... .......... .......... .......... 3421 .......... .......... .......... .......... .......... .......... 3481 .......... .......... .......... .......... .......... .......... 3541 .......... .......... .......... .......... .......... .......... 3601 .......... .......... .......... .......... .......... .......... 3661 .......... .......... .......... .......... .......... .......... 3721 .......... .......... .......... .......... .......... .......... 3781 .......... .......... .......... .......... .......... .......... 3841 .......... .......... .......... .......... .......... .......... 3901 .......... .......... .......... .......... .......... .......... 3961 .......... .......... .......... .--....... .......... ...---.... 4021 ....---... .......... .......... .....----- ---------- ---------. 4081 .......... .......... .......... .......... .......... .......... 4141 .......... .......... .......... .......... .......... .......... 4201 .......... .......... .......... .......... .......... .......... 4261 .......... .......... .......... .......... .......... ......---- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 --------.. --........ .......... .........- -.....-... ......| // LOCUS Am.sp.1.1 4557 bp RNA RNA 28-JAN-191 DEFINITION Amphikrikos sp. Hegewald 1995-26. ACCESSION No information KEYWORDS No information. SOURCE Amphikrikos sp. Hegewald 1995-26. ORGANISM Amphikrikos sp. Hegewald 1995-26. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 4557) Corresponding GenBank entry: AF228690 LOCUS AF228690 3597 bp DNA PLN 17-APR-2000 DEFINITION Amphikrikos sp. Hegewald 1995-26 18S ribosomal RNA gene, partial sequence. ACCESSION AF228690 VERSION AF228690.1 GI:7578835 KEYWORDS . SOURCE Amphikrikos sp. Hegewald 1995-26. ORGANISM Amphikrikos sp. Hegewald 1995-26 Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; Oocystaceae; Amphikrikos. REFERENCE 1 (bases 1 to 3597) AUTHORS Hepperle,D., Hegewald,E. and Krienitz,L. TITLE Phylogenetic Position of Oocystaceae (Chlorophyta) JOURNAL Unpublished REFERENCE 2 (bases 1 to 3597) AUTHORS Hepperle,D., Hegewald,E. and Krienitz,L. TITLE Direct Submission JOURNAL Submitted (26-JAN-2000) Dep. Stratified Lakes, Institute of Freshwater Ecology and Inland Fisheries, Alte Fischerhuette 2, Stechlin, Brandenburg 16775, Germany FEATURES Location/Qualifiers source 1..3597 /organism="Amphikrikos sp. Hegewald 1995-26" /strain="Hegewald 1995-26" /db_xref="taxon:120763" rRNA join(<1..129,557..968,1387..1575,2006..2590, 2995..>3425) /product="18S ribosomal RNA" BASE COUNT 871 a 849 c 1054 g 816 t 7 others BASE COUNT 105 a 115 c 143 g 89 t 4105 others ORIGIN 1 |cucggauaa ccgU||a--- -------(-- --gaauua-- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- ---------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 -------|-- ----u|Ucgu uua-|----- ---------a au-|AGGCUG C--------- 781 ---------- ---------- --------(g cgag------ ---------- ---------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --cag--cCC U|--A----- -----|uga- gg-------- ag-ggg---- ---------- 1021 --(uuu---- ---------- ---------- ---------u ugcgccuucu gc-------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 ---------- ---------- ---------- ---------- ---------- ---------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- ---------- -)-------- ---------- 1561 ---------- ---------- ---------- ---------- ---------- ---------- 1621 ----ccccuc --g--cuug| c-GA|CACU- G-U-C|AAAU |UG--C-UCG |GAAA----| 1681 U-CC------ ---------- ---------- -|uguc---- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------a ag-------C 1801 GU-------- CG-AG|U-AC C|-------- ---------- ---------- ---------- 1861 ---|GCC-C- UCuG-C---- -C-CC-(AAA A--------- ---------- ---------- 1921 ---------- -)-GGG--GC --G-A-GuG- G-C|A---|C C-C-A-G-UU (GAAA----- 1981 ---------- --------)G GC-U-G--G- G|-------G UA-U|GGU-G ACA-AU-CU- 2041 CG--G-CG-| -cuag----- ------|--- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- --GGA|-CGA -|UG-AGCA| GCC|-AA--- 2221 |GCCC----- ------(--- ---------- ---------- ---------- ---------- 2281 ---------- ----)|-|U| AA----|GGG A--------- ---------- ---------- 2341 (g-uaa-ca- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- -------|-- 2461 --------UC CU-|A|U|-- ---------- GGGU|--GC| AGU|--CCA| CA-GACU-A| 2521 -AAU|GGC-A --G-UG|G|G UCUCUCAU-- ---------- -(uguu---- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------A 2701 UGAGAGGCU- |UAA-GA-UA |UA-GUC|G| -|GC-----| cc---|ccac c--------- 2761 ----(-GAGA ---------- )--------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---------- ---------- 2881 --|------- -g--g-u-g- g|-------- --|-acuccg ag-------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- -|----agga a--|ggggu- ----(--agg 3121 ---------- ---------- ---------- ---------- ---------- ---------- 3181 ---------- ---------- -----)---- g-cccu|--- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ---------- ---------- ---------- ---------- ---------- ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- --|--gaga- g--|------ ---------- --c---ucag 4021 agu|------ --------|g guag-gcgg- ---------- ---------- ---------( 4081 agucauguag cgcuuggggc aacccgagcg accggcgucg agccg----- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- ------|-|- ------cugc c-uacc|--- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------| -----ggaac ac-------| -----GC|G- -||agu-aaa ucuaga| // LOCUS Chl.t.1.1 4557 bp RNA RNA 28-JAN-191 DEFINITION Chlorella trebouxioides. ACCESSION No information KEYWORDS No information. SOURCE Chlorella trebouxioides. ORGANISM Chlorella trebouxioides. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 4557) Corresponding GenBank entry: AB006048 Position: 157 OCUS AB006048 2397 bp DNA PLN 30-MAY-2000 DEFINITION Chlorella trebouxioides gene for 18S rRNA, partial sequence. ACCESSION AB006048 VERSION AB006048.1 GI:8117153 KEYWORDS 18S ribosomal RNA. SOURCE Chlorella trebouxioides (strain:MES-A1-2) DNA. ORGANISM Chlorella trebouxioides Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; Chlorellales; Chlorellaceae; Chlorella. REFERENCE 1 (sites) AUTHORS Hanagata,N. JOURNAL Unpublished REFERENCE 2 (bases 1 to 2397) AUTHORS Hanagata,N. TITLE Direct Submission JOURNAL Submitted (25-JUL-1997) to the DDBJ/EMBL/GenBank databases. Nobutaka Hanagata, The University of Tokyo, Research Center for Advanced Science and Technology; 4-6-1 Komaba, Meguro-ku, Tokyo 153-8904, Japan (E-mail:hanagata@bio.rcast.u-tokyo.ac.jp, Tel:81-3-5452-5320, Fax:81-3-5452-5320) FEATURES Location/Qualifiers source 1..2397 /organism="Chlorella trebouxioides" /strain="MES-A1-2" /db_xref="taxon:63676" rRNA join(<1..149,536..1552,1766..>2397) /product="18S ribosomal RNA" prim_transcript <1..>2397 intron 150..535 /note="group I intron" intron 1553..1765 /note="group I intron" BASE COUNT 564 a 571 c 704 g 553 t 5 others BASE COUNT 91 a 113 c 136 g 69 t 4148 others ORIGIN 1 |cucggauaa ccgU||aa-- -------(-- --ggauun-- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- ---------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 -------|-- ---uu|Gcgg ----|----- ---------- -g-|AGGG-- ---------- 781 ---------- ---------- --------(a ancgaaagcc ug-------- ---------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 -------CCC U|--A----- -----|GUG- GC-------- UC-G------ ---------- 1021 --(aaa---- ---------- ---------- ---------a g--------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 ---------- ---------- ---------- ---------- ---------- ---------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- ---------- -)-------- ---------- 1561 ---------- ---------- ---------- ---------- ---------- ---------- 1621 -------CGA --G--CUGC| --GA|CACU- G-U-C|GAAU |UG--C-CCG |GACG----| 1681 U-CC------ ---------- ---------- -|ugc----- ---------- ---------- 1741 ---------- ---------- ---------- ---------- --------UA CG|------C 1801 UG-------- GA-GG|G-AC C|-------- ---------- ---------- ---------- 1861 ---|GUC-U- GG-G-U---- -C-GG-(GAG A--------- ---------- ---------- 1921 ---------- -)-CCG--GC --C-U-G-G- A-C|A---|C U-C-GuG-GC (GAAA----- 1981 ---------- --------)G CCuC-G--A- G|-------G UA-C|GGU-A ACA-CU-CC- 2041 UC--C-CG-| -cuag----- ------|--- ---------- ---------- ---------- 2101 ---------- ---------- ---------- -|-------- ---------- ---------- 2161 ---------- ---------- ---------- --GGG|-CUA -|UG-GGCA| GCC|-AA--- 2221 |GCUC----- ------(--- ---------- ---------- ---------- ---------- 2281 ---------- ----)|-|U| AA----|guc gcu------- ---------- ---------- 2341 (c-ucg-c-- ---------- ---------- ---------- ---------- ---------- 2401 -------)-- ---------- ---------- ---------- ---------- -------|-- 2461 ------agcg au-|A|C|-- ---------- GAGU|--GC| AGU|--CCA| CA-GACU-A| 2521 -GAU|GGC-A --G-UG|G|G UAUCGCU--- ---------- -(caucga-- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 AGCGAUGCU- |UAA-GA-CA |UA-GUC|G| -|GU-----| cc---|ccac c--------- 2761 ----(-GAGA ---------- )--------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---------- ---------- 2881 --|------- -g--g-u-g- g|-------- --|-uucgac gg-------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- -|----agga u--|cgagg- c---(--gac 3121 c--------- ---------- ---------- ---------- ---------- ---------- 3181 ---------- ---------- -----)---g c-cucg|--- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ---------- ---------- ---------- ---------- ---------- ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- --|-ugaga- g--|------ ---------- --c---cgcc 4021 gag|------ --------|g ucgggcg--- ---------- ---------- ---------( 4081 aggucuagcu agacgacc-- ---------- ---------- ---------- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- ---------- --------cg c-cgac|--- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------| -----ggagc ac-------| -----AC|G- -||agu-aau ucuaga| // LOCUS C1-S-170 4557 bp RNA RNA ~?~???? DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 4557) Corresponding GenBank entry: DIVIDER BASE COUNT 0 a 0 c 0 g 0 t 4557 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- -----|---- ---------- ---------- ---------- ---------- 301 ---------| --|------- ---||||||| |||||||||~ |......... .......... 361 .......... .......... .......... .......... .......... .......... 421 .......... .......... .......... .......... .......... .......... 481 .......... .......... .......... .......... .......... .......... 541 .......... .......... .......... .......... .......... .......... 601 .......... .......... .......... .......... .......... .......... 661 .......... .......... .......... .......... .......... .......... 721 .......... .......... ....|..... .......... ..-....... .......... 781 .......... .......... .......... .......... .......... .......... 841 .......... .......... .......... .......... .......... .......... 901 .......... .......... .......... .......... .......... .......... 961 .......... ..--...... .......... .......... .......... .......... 1021 .......... .......... .......... .......... .......... .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .......... .......... .......... .......... .......... 1201 .......... .......... .......... .......... .......... .......... 1261 .......... .......... .......... .......... .......... .......... 1321 .......... .......... .......... .......... .......... .......... 1381 .......... .......... .......... .......... .......... .......... 1441 .......... .......... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... .......... .......... .......... .......... .......... 1621 .......... .......... .......... .......... ......-... ......---. 1681 ....------ ---------- ---------- -......... .......... .......... 1741 .......... .......... .......... .......... .......... .......... 1801 .......... .......... ...------- ---------- ---------- ---------- 1861 ---....... .......... .......... .......... .......... .......... 1921 .......... .......... .......... .......... .......-.. .......... 1981 .......... .......... .......... .|........ .......... .......... 2041 .......... -......... .......... .......... .......... .......... 2101 .......... ....-..... .......... .......... .......... .......... 2161 .......... .......... .......... .......... .......... ....-..... 2221 .......... ....--(... .......... .......... .......... .......... 2281 .......... ....)|.|.| .......... .......... .......... .......... 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......-.. .......|.- -......... .......... .......... .......... 2521 ........-. ...-...... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... -......... 2701 .........- .......... .......... .......... .......... .......... 2761 .......... .......--- .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... .......... 2881 .......... ..--...... .......... .......... .......... .......... 2941 .......... .......... .......... .......... .......... .......... 3001 .......... .......... .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .....--... 3121 .......... .......... .......... .......... .......... .......... 3181 .......... .......... .......... .......... .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .......... .......... .......... 3361 .......... .......... .......... .......... .......... .......... 3421 .......... .......... .......... .......... .......... .......... 3481 .......... .......... .......... .......... .......... .......... 3541 .......... .......... .......... .......... .......... .......... 3601 .......... .......... .......... .......... .......... .......... 3661 .......... .......... .......... .......... .......... .......... 3721 .......... .......... .......... .......... .......... .......... 3781 .......... .......... .......... .......... .......... .......... 3841 .......... .......... .......... .......... .......... .......... 3901 .......... .......... .......... .......... .......... .......... 3961 .......... .......... .......... .--....... .......... ...---.... 4021 ....---... .......... .......... .....----- ---------- ---------. 4081 .......... .......... .......... .......... .......... .......... 4141 .......... .......... .......... .......... .......... .......... 4201 .......... .......... .......... .......... .......... .......... 4261 .......... .......... .......... .......... .......... ......---- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 --------.. --........ .......... .........- -.....-... ......| // LOCUS Sel.c.1.2 4557 bp RNA RNA 28-JAN-191 DEFINITION Selenastrum capricornutum. ACCESSION No information KEYWORDS No information. SOURCE Selenastrum capricornutum. ORGANISM Selenastrum capricornutum. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 4557) Corresponding GenBank entry: AF169628 LOCUS AF169628 4099 bp DNA PLN 01-AUG-2000 DEFINITION Selenastrum capricornutum small subunit ribosomal RNA gene, complete sequence. ACCESSION AF169628 VERSION AF169628.1 GI:9622215 KEYWORDS . SOURCE Selenastrum capricornutum. ORGANISM Selenastrum capricornutum Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; Chlorellales; Selenastraceae; Selenastrum. REFERENCE 1 (bases 1 to 4099) AUTHORS Booton,G.C., Floyd,G.L. and Fuerst,P.A. TITLE Multiple group I introns detected in the nuclear small subunit rDNA of the autosporic green algae Selenastrum capricornutum JOURNAL unpublished REFERENCE 2 (bases 1 to 4099) AUTHORS Booton,G.C., Floyd,G.L. and Fuerst,P.A. TITLE Direct Submission JOURNAL Submitted (16-JUL-1999) Molecular Genetics, The Ohio State University, 484 W. 12th Ave., Columbus, OH 43210, USA FEATURES Location/Qualifiers source 1..4099 /organism="Selenastrum capricornutum" /strain="UTEX 1648" /db_xref="taxon:118073" rRNA join(1..149,543..557,955..1956,2342..2438,2771..2845, 3284..3713,4075..4099) /product="small subunit ribosomal RNA" intron 150..542 /note="group I" intron 558..954 /note="group I" intron 1957..2341 /note="group I" intron 2439..2771 /note="group I" intron 2846..3283 /note="group I" intron 3714..4074 /note="group I" BASE COUNT 1028 a 892 c 1084 g 937 t 158 others BASE COUNT 114 a 97 c 116 g 93 t 4137 others ORIGIN 1 |uaauucuag agcU||aa-- -------(-- --uaguguua ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- ---------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 -------|-- ---uu|Gguu cu--|----- ---------g aa-|AGGGuu ---------- 781 ---------- ---------- --------(c aa-------- ---------- ---------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 ---aa--CCC U|--A----- -----|GUG- GC-------- a--------- ---------- 1021 --(cgu---- ---------- ---------- ---------u ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 ---------- ---------- ---------- ---------- ---------- ---------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- ---------- -)-------- ---------- 1561 ---------- ---------- ---------- ---------- ---------- ---------- 1621 ---------u --G--CUGC| --GA|CACU- G-U-C|CAAU |UG--C-CGG |AACA----| 1681 U-GU------ ---------- ---------- -|gcg----- ---------- ---------- 1741 ---------- ---------- ---------- ---------- --------GA AU|------C 1801 CU-------- CuuGG|U-AC C|-------- ---------- ---------- ---------- 1861 ---|GCc-U- CA-AgcC--- -U-UG-(GAA A--------- ---------- ---------- 1921 ---------- -)-CAA--GU --U-G-A--- G-C|A---|C C-G-C-AuGG (GAAA----- 1981 ---------- --------)C CU-G-C--G- G|-------G UA-C|GGU-A AUA-AC-UU- 2041 cG--A-GG-| -gguag---- ------|--- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- --ANA|-CAA -|UC-GGCA| GCC|-AA--- 2221 |GUC------ ------(--- ---------- ---------- ---------- ---------- 2281 ---------- ----)|-|U| ac----|ggg uagag----- ---------- ---------- 2341 (a-gag-c-- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- -------|-- 2461 ---cucu-ac cu-|A|G|-- ---------- -GAU|--GC| AGU|--UCA| CA-GACUCA| 2521 -AAU|-GC-A --G-UG|G|c Cucng----- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ------GCU- |UAA-GA-UA |UA-GUC|G| -|Aa-----| gc---|cuca ca-------- 2761 ----(uGCAA ---------- )--------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---------- ---------- 2881 --|------- ug--u-g-g- g|-------- --|-ucugug gg-------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ------aaga a--|ggu--- ----(--uua 3121 gc-------- ---------- ---------- ---------- ---------- ---------- 3181 ---------- ---------- -----)---- ---acc|--- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ---------- ---------- ---------- ---------- ---------- ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- --|-ugaga- g--|------ ---------- --c---ccac 4021 aga|------ --------|a gcac-agg-- ---------- ---------- ---------- 4081 auaaucaaau uuggucccgu gaggguacca agggcacgca ugcgcc---- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- ---------- -------ccu g-ugcu|--- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ----guacaa ---------- -----CU|G- -||aau-acg ugcgua| // LOCUS C1-S-323 4557 bp RNA RNA ~?~???? DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 4557) Corresponding GenBank entry: DIVIDER BASE COUNT 0 a 0 c 0 g 0 t 4557 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- -----|---- ---------- ---------- ---------- ---------- 301 ---------| --|------- ---||||||| |||||||||~ |......... .......... 361 .......... .......... .......... .......... .......... .......... 421 .......... .......... .......... .......... .......... .......... 481 .......... .......... .......... .......... .......... .......... 541 .......... .......... .......... .......... .......... .......... 601 .......... .......... .......... .......... .......... .......... 661 .......... .......... .......... .......... .......... .......... 721 .......... .......... ....|..... .......... ..-....... .......... 781 .......... .......... .......... .......... .......... .......... 841 .......... .......... .......... .......... .......... .......... 901 .......... .......... .......... .......... .......... .......... 961 .......... ..--...... .......... .......... .......... .......... 1021 .......... .......... .......... .......... .......... .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .......... .......... .......... .......... .......... 1201 .......... .......... .......... .......... .......... .......... 1261 .......... .......... .......... .......... .......... .......... 1321 .......... .......... .......... .......... .......... .......... 1381 .......... .......... .......... .......... .......... .......... 1441 .......... .......... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... .......... .......... .......... .......... .......... 1621 .......... .......... .......... .......... ......-... ......---. 1681 ....------ ---------- ---------- -......... .......... .......... 1741 .......... .......... .......... .......... .......... .......... 1801 .......... .......... ...------- ---------- ---------- ---------- 1861 ---....... .......... .......... .......... .......... .......... 1921 .......... .......... .......... .......... .......-.. .......... 1981 .......... .......... .......... .|........ .......... .......... 2041 .......... -......... .......... .......... .......... .......... 2101 .......... ....-..... .......... .......... .......... .......... 2161 .......... .......... .......... .......... .......... ....-..... 2221 .......... ....--(... .......... .......... .......... .......... 2281 .......... ....)|.|.| .......... .......... .......... .......... 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......-.. .......|.- -......... .......... .......... .......... 2521 ........-. ...-...... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... -......... 2701 .........- .......... .......... .......... .......... .......... 2761 .......... .......--- .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... .......... 2881 .......... ..--...... .......... .......... .......... .......... 2941 .......... .......... .......... .......... .......... .......... 3001 .......... .......... .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .....--... 3121 .......... .......... .......... .......... .......... .......... 3181 .......... .......... .......... .......... .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .......... .......... .......... 3361 .......... .......... .......... .......... .......... .......... 3421 .......... .......... .......... .......... .......... .......... 3481 .......... .......... .......... .......... .......... .......... 3541 .......... .......... .......... .......... .......... .......... 3601 .......... .......... .......... .......... .......... .......... 3661 .......... .......... .......... .......... .......... .......... 3721 .......... .......... .......... .......... .......... .......... 3781 .......... .......... .......... .......... .......... .......... 3841 .......... .......... .......... .......... .......... .......... 3901 .......... .......... .......... .......... .......... .......... 3961 .......... .......... .......... .--....... .......... ...---.... 4021 ....---... .......... .......... .....----- ---------- ---------. 4081 .......... .......... .......... .......... .......... .......... 4141 .......... .......... .......... .......... .......... .......... 4201 .......... .......... .......... .......... .......... .......... 4261 .......... .......... .......... .......... .......... ......---- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 --------.. --........ .......... .........- -.....-... ......| // LOCUS Chl.so.1.1 4557 bp RNA RNA 28-JAN-191 DEFINITION Chlorella sorokiniana. ACCESSION No information KEYWORDS No information. SOURCE Chlorella sorokiniana. ORGANISM Chlorella sorokiniana. REFERENCE 1 AUTHORS Huss V.A.R. JOURNAL Direct Submission STANDARD No information COMMENTS Sequence information (bases 1 to 4557) Corresponding GenBank entry: X73993 FT /organism="Chlorella sorokiniana" FT /strain="SAG 211-40a" FT intron 395..859 FT /number=1 FT intron 1732..2159 FT /number=2 BASE COUNT 108 a 127 c 161 g 88 t 4073 others ORIGIN 1 |~~~~aggga gccU||gg-- -------(ac a|gcuacu(( (aauaauaca gauagac)|a 61 guagc|acau uuc------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- ---------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 -------|-- ---uu|Gggc uc--|----- ---------g ag-|AGCGGg ---------- 781 ---------- ---------- --------(c ugaaag---u gu-------- ---------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- --------c- 961 ----C--CGC U|--A----- -----|GUC- CU-------- cc-------- ---------- 1021 --(cgc---- ---------- ---------- ---------u guu------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 ---------- ---------- ---------- ---------- ---------- ---------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- ---------- -)-------- ---------- 1561 ---------- ---------- ---------- ---------- ---------- ---------- 1621 --------gg --A--GGGC| --AA|CACC- G-U-C|AAAU |UG--C-GGG |GAGG----| 1681 C-CC------ ---------- ---------- -|U------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- --------AA AG|------C 1801 UU-------- UG-AC|U-AC C|-------- ---------- ---------- ---------- 1861 ---|AAG-C- CG-G-C---- -G-UG-(GAA A--------- ---------- ---------- 1921 ---------- -)-CAC-aGU --C-G-G-U- G-G|----|C C-A-G-G-GU (aacg----- 1981 ---------- --------)A CC-U-C--G- G|-------G UA-U|GGU-A AAA-AC-GU- 2041 CA--A-AG-| -A-------- ------|ug- ---------- ---------- --(ca-c--- 2101 ----)----- ---------- -ca|-----a u|-------- ---------- ---------- 2161 ---------- ---------- ---------- --GGG|-UUA -|UC-CGCA| GCC|-AA--- 2221 |GUCC----- ------(--- ---------- ---------- ---------- ---------- 2281 ---------- ----)|-|U| AA----|ggg caa------- ---------- ---------- 2341 (c-ucu---- ---------- ---------- ---------- ---------- ---------- 2401 -------)-- ---------- ---------- ---------- ---------- -------|-- 2461 -----uu-gc cu-|A|U|-- ---------- GGAU|--GC| AGU|--CCA| CA-GACU-A| 2521 -GAU|GGC-G --G-UG|G|G UCggggggc- ---------- -(ggu----- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------) --------gu 2701 cccccGGCU- |UGA-GA-UA |UA-GUC|G| -|GC-----| c----|ccac c--------- 2761 ----(-GAGA ---------- )--------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---------- ---------- 2881 ---------- -g--g-u-g- g|-------- --|-ucugag gg-------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- -|----agga ---|gcygc- g---(--cgc 3121 ugu------- ---------- ---------- ---------- ---------- ---------- 3181 ---------- ---------- -----)---c g-cggu|--- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ---------- ---------- ---------- ---------- ---------- ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- --|--gaga- g--|------ ---------- --c---ccuc 4021 aga|------ --------|g ugcu-ugg-- ---------- ---------- ---------( 4081 caugcgagua cuuucggucg ugaggccgaa agggcagcru cgucccccgg cgccgccu-- 4141 -)-------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- --------|- -------ccg a-gcac|--- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------| ----ggauua c--------| -----GC|G- -||gag-aaa cggcua| // LOCUS Sce.p.1.1 4557 bp RNA RNA 22-SEP-1995 DEFINITION Scenedesmus pupukensis.. ACCESSION No information KEYWORDS No information. SOURCE Scenedesmus pupukensis. ORGANISM Scenedesmus pupukensis. REFERENCE 1 AUTHORS Huss,V.A.R., Schaefer,M., Huemmer,C. and Kessler,E. TITLE representatives of the three subgenera of Scenedesmus (Chlorococcales, Chlorophyta) Physiological, biochemical and molecular characters of some JOURNAL Unpublished STANDARD No information COMMENTS Sequence information (bases 1 to 4557) Corresponding GenBank entry: X91267 LOCUS KPUPU18S 4930 bp DNA PLN 02-JUL-1998 DEFINITION S.pupukensis 18S ribosomal RNA gene. ACCESSION X91267 NID g3250871 VERSION X91267.1 GI:3250871 KEYWORDS 18S ribosomal RNA; 18S rRNA gene. SOURCE Scenedesmus pupukensis. ORGANISM Scenedesmus pupukensis Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Chlorococcales; Scenedesmaceae; Scenedesmus. REFERENCE 1 (bases 1 to 4930) AUTHORS Huss,V.A.R. TITLE Direct Submission JOURNAL Submitted (10-SEP-1995) V.A.R. Huss, Inst.f. Botanik und Pharmazeut. Biologie, Univ. Erlangen, Staudtstr. 5, D- 91058 Erlangen, FRG REMARK revised by [4] REFERENCE 2 (bases 1 to 4930) AUTHORS Kessler,E., Schaefer,M., Huemmer,C., Kloboucek,A. and Huss,V.A.R. TITLE Physiological, biochemical, and molecular characters for the taxonomy of the subgenera of Scenedesmus (Chlorococcales, Chlorophyta) JOURNAL Bot. Acta 110, 244-250 (1997) REFERENCE 3 (bases 1 to 4930) AUTHORS Huss,V.A.R. TITLE Direct Submission JOURNAL Submitted (22-JUN-1998) V.A.R. Huss, Inst.f. Botanik und Pharmazeut. Biologie, Univ. Erlangen, Staudtstr. 5, D- 91058 Erlangen, FRG COMMENT On Jun 24, 1998 this sequence version replaced gi:995658. gene 1..4930 /gene="18S rRNA" intron 36..2342 /gene="18S rRNA" /note="group I intron" BASE COUNT 129 a 87 c 125 g 114 t 4102 others ORIGIN 1 |ggagaggga gccU||ga-- -------(-- --aaagaauu uguuuc---- ---------- 61 ---------- ---------- --)------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- ---------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 ---------- ---uu|Gggc uc--|----- ---------a aa-|AGUGAc ac-------- 781 ---------- ---------- --------(c ugaauu---- ---------- ---------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- -----gu-g- 961 ----U--UGC U|--A----- -----|GUG- CU-------- uc-------- ---------- 1021 --(uaa---- ---------- ---------- ---------u u--------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 ---------- ---------- ---------- ---------- ---------- ---------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- ---------- -)-------- ---------- 1561 ---------- ---------- ---------- ---------- ---------- ---------- 1621 --------ga --A--GUGC| --GA|CACU- G-U-C|AAAU |UG--C-CGG |AACC----| 1681 U-CC------ ---------- ---------- -|Cgu----- ---------- ---------- 1741 ---------- ---------- ---------- ---------- --------GA AG|------C 1801 UG-------- UC-AG|U-AC C|-------- ---------- ---------- ---------- 1861 ---|GUU-U- GA-U-A---- -G-AG-(GAA A--------- ---------- ---------- 1921 ---------- -)-CUC--UA --U-U-G-A- A-C|a---|C C-G-A-G-GC (GAAA----- 1981 ---------- --------)G UC-U-U--G- G|-------G UA-U|GGU-A AUA-AU-CU- 2041 GA--C-AG-| -auag----- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- --GGA|-CAA -|UC-GGCA| GCC|-AA--- 2221 |GUCC----- ------(--- ---------- ---------- ---------- ---------- 2281 ---------- ----)|-|U| AA----|cgg cg-------- ---------- ---------- 2341 (u-cuu-uu- ---------- ---------- ---------- ---------- ---------- 2401 -------)-- ---------- ---------- ---------- ---------- -------|-- 2461 ------c-gu cu-|A|U|-- ---------- GGAU|--GC| AGU|--UCA| CA-GACU-A| 2521 -AAU|GUC-A --G-UG|G|G CCuauu---- ---------- -(uguu---- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 -aauaGGCU- |GAA-GA-UA |UA-GUC|G| -|GC-----| cc---|ccac c--------- 2761 ----(-GAAA ---------- )--------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---------- ---------- 2881 ---------- -g--g-u-gu g|-------- --|-ucugca au-------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- -|---aggaa ---|cugug- ca--(--aua 3121 aaca------ ---------- ---------- ---------- ---------- ---------- 3181 ---------- ---------- -----)--ug c-acag|--- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ---------- ---------- ---------- ---------- ---------- ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- --|-ggaga- g--|------ ---------- --a---uugc 4021 aga|------ --------|g uauu-cgga- ---------- ---------- ---------( 4081 aucauauacu uucaguugug aggcugaaag ggcguucaau uguggcgcc- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- ---------- ------uccg a-auau|--- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------| ----ggacaa ---------| -----GC|G- -||gag-aaa cggcua| // LOCUS Neo.d.1.1 4557 bp RNA RNA 28-JAN-191 DEFINITION Neodesmus danubialis. ACCESSION No information KEYWORDS No information. SOURCE Neodesmus danubialis. ORGANISM Neodesmus danubialis. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 4557) Corresponding GenBank entry: AB037086 LOCUS AB037086 2599 bp DNA PLN 18-JUL-2000 DEFINITION Neodesmus danubialis gene for 18S rRNA, complete sequence. ACCESSION AB037086 VERSION AB037086.1 GI:9279818 KEYWORDS 18S ribosomal RNA. SOURCE Neodesmus danubialis (strain:SAG 17.81) DNA. ORGANISM Neodesmus danubialis Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Chlorococcales; Scenedesmaceae; Neodesmus. REFERENCE 1 (sites) AUTHORS Hegewald,E. and Hanagata,N. TITLE Phylogenetic studies on Scenedesmaceae JOURNAL Unpublished (2000) REFERENCE 2 (bases 1 to 2599) AUTHORS Hanagata,N. TITLE Direct Submission JOURNAL Submitted (14-JAN-2000) to the DDBJ/EMBL/GenBank databases. Nobutaka Hanagata, The University of Tokyo, Research Center for Advanced Science and Technology; 4-6-1 Komaba, Meguro-ku, Tokyo 153-8904, Japan (E-mail:hanagata@bio.rcast.u-tokyo.ac.jp, Tel:81-3-5452-5320, Fax:81-3-5452-5320) FEATURES Location/Qualifiers source 1..2599 /organism="Neodesmus danubialis" /strain="SAG 17.81" /db_xref="taxon:113524" rRNA 1..2599 /product="18S rRNA" BASE COUNT 709 a 543 c 697 g 650 t BASE COUNT 145 a 88 c 120 g 92 t 4112 others ORIGIN 1 |ggagaggga gccU||ug-- -------(aa ugaaaucaaa aguuuc---- ---------- 61 ---------- ---------- --)------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- ---------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 ---------- ---ua|Gggc uc--|----- ---------a aa-|AGUAAc ac-------- 781 ---------- ---------- --------(- aaaag----- ---------- ---------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- -----gu-g- 961 ----U--UGC U|--A----- -----|GUA- CU-------- uc-------- ---------- 1021 --(uga---- ---------- ---------- ---------u aaaaag---- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 ---------- ---------- ---------- ---------- ---------- ---------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- ---------- -)-------- ---------- 1561 ---------- ---------- ---------- ---------- ---------- ---------- 1621 --------ga --A--GUGC| --GA|CACU- G-U-C|AAAU |UG--C-CGG |AAAC----| 1681 U-CC------ ---------- ---------- -|Cgc----- ---------- ---------- 1741 ---------- ---------- ---------- ---------- --------UA AG|------C 1801 UG-------- UC-AG|U-AC C|-------- ---------- ---------- ---------- 1861 ---|GUU-U- AA-U-A---- -G-AG-(GAA A--------- ---------- ---------- 1921 ---------- -)-CUC--UA --U-UCA-A- A-C|a---|C C-C-A-G-GG (GAAA----- 1981 ---------- --------)C UC-A-G--G- G|-------G UA-U|GGU-A A-A-AU-CU- 2041 GA--C-AG-| -auag----- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- --GGA|-CAA -|UC-GGCA| GCC|-AA--- 2221 |GUCC----- ------(--- ---------- ---------- ---------- ---------- 2281 ---------- ----)|-|U| AA----|ggg ca-------- ---------- ---------- 2341 (a-acg-u-- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- -------|-- 2461 ------u-gc cu-|A|U|-- ---------- GGAU|--GC| AGU|--CCA| CA-GACU-A| 2521 -AAU|GGC-A --G-UG|G|G CCuau----- ---------- -(gagu---- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 --auaGGCU- |GAU-GA-UA |UA-GUC|G| -|GC-----| cc---|cuac c--------- 2761 ----(-GAUA ---------- ---------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---------- ---------- 2881 ---------- -g--g-u-a- g|-------- --|-ucugca au-------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- -|---aggaa ---|ccau-- ----(--gca 3121 a--------- ---------- ---------- ---------- ---------- ---------- 3181 ---------- ---------- -----)---- --augg|--- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ---------- ---------- ---------- ---------- ---------- ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- --|-ggaga- g--|------ ---------- --a---uugc 4021 aga|------ --------|g uauu-cggg- ---------- ---------- ---------( 4081 auaaaauacu uucuaucgca agacugaaag ggcgu--ugu c---acgcc- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- ---------- ------uccg a-augc|--- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------| ---ggaacaa ---------| -----GC|G- -||gag-aaa cggcua| // LOCUS C1-S-516 4557 bp RNA RNA ~?~???? DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 4557) Corresponding GenBank entry: DIVIDER BASE COUNT 0 a 0 c 0 g 0 t 4557 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- -----|---- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---|--|--- -------||| |||||||||| ||||~|.... 361 .......... .......... .......... .......... .......... .......... 421 .......... .......... .......... .......... .......... .......... 481 .......... .......... .......... .......... .......... .......... 541 .......... .......... .......... .......... .......... .......... 601 .......... .......... .......... .......... .......... .......... 661 .......... .......... .......... .......... .......... .......... 721 .......... .......... ....|..... .......... ..-....... .......... 781 .......... .......... .......... .......... .......... .......... 841 .......... .......... .......... .......... .......... .......... 901 .......... .......... .......... .......... .......... .......... 961 .......... ..--...... .......... .......... .......... .......... 1021 .......... .......... .......... .......... .......... .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .......... .......... .......... .......... .......... 1201 .......... .......... .......... .......... .......... .......... 1261 .......... .......... .......... .......... .......... .......... 1321 .......... .......... .......... .......... .......... .......... 1381 .......... .......... .......... .......... .......... .......... 1441 .......... .......... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... .......... .......... .......... .......... .......... 1621 .......... .......... .......... .......... ......-... ......---. 1681 ....------ ---------- ---------- -......... .......... .......... 1741 .......... .......... .......... .......... .......... .......... 1801 .......... .......... ...------- ---------- ---------- ---------- 1861 ---....... .......... .......... .......... .......... .......... 1921 .......... .......... .......... .......... .......-.. .......... 1981 .......... .......... .......... .|........ .......... .......... 2041 .......... -......... .......... .......... .......... .......... 2101 .......... ....-..... .......... .......... .......... .......... 2161 .......... .......... .......... .......... .......... ....-..... 2221 .......... ....--(... .......... .......... .......... .......... 2281 .......... ....)|.|.| .......... .......... .......... .......... 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......-.. .......|.- -......... .......... .......... .......... 2521 ........-. ...-...... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... -......... 2701 .........- .......... .......... .......... .......... .......... 2761 .......... .......--- .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... .......... 2881 .......... ..--...... .......... .......... .......... .......... 2941 .......... .......... .......... .......... .......... .......... 3001 .......... .......... .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .....--... 3121 .......... .......... .......... .......... .......... .......... 3181 .......... .......... .......... .......... .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .......... .......... .......... 3361 .......... .......... .......... .......... .......... .......... 3421 .......... .......... .......... .......... .......... .......... 3481 .......... .......... .......... .......... .......... .......... 3541 .......... .......... .......... .......... .......... .......... 3601 .......... .......... .......... .......... .......... .......... 3661 .......... .......... .......... .......... .......... .......... 3721 .......... .......... .......... .......... .......... .......... 3781 .......... .......... .......... .......... .......... .......... 3841 .......... .......... .......... .......... .......... .......... 3901 .......... .......... .......... .......... .......... .......... 3961 .......... .......... .......... .--....... .......... ...---.... 4021 ....---... .......... .......... .....----- ---------- ---------. 4081 .......... .......... .......... .......... .......... .......... 4141 .......... .......... .......... .......... .......... .......... 4201 .......... .......... .......... .......... .......... .......... 4261 .......... .......... .......... .......... .......... ......---- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 --------.. --........ .......... .........- -.....-... ......| // LOCUS Aca.g.1.1 4557 bp RNA RNA 16-MAR-1994 DEFINITION Acanthamoeba griffini. ACCESSION No information KEYWORDS No information. SOURCE Acanthamoeba griffini. ORGANISM Acanthamoeba griffini. REFERENCE 1 AUTHORS Gast,R.J.;Fuerst,P.A.;Byers,T.J. TITLE Discovery of group I introns in the nuclear small subunit JOURNAL No information STANDARD No information COMMENTS Sequence information (bases 1 to 4557) Corresponding GenBank entry: U02540,U07412 LOCUS AGU02540 519 bp DNA INV 25-MAY-1994 DEFINITION Acanthamoeba griffini S-7 ATCC 30731 nuclear small subunit ribosomal gene, group I intron. ACCESSION U02540 NID g460093 VERSION U02540.1 GI:460093 KEYWORDS . SOURCE Acanthamoeba griffini. ORGANISM Acanthamoeba griffini Eukaryota; Acanthamoebidae; Acanthamoeba. REFERENCE 1 (bases 1 to 519) AUTHORS Gast,R.J., Fuerst,P.A. and Byers,T.J. TITLE Discovery of group I introns in the nuclear small subunit ribosomal RNA genes of Acanthamoeba JOURNAL Nucleic Acids Res. 22, 592-596 (1994) MEDLINE 94173725 REFERENCE 2 (bases 1 to 519) AUTHORS Gast,R.J. TITLE Direct Submission JOURNAL Submitted (14-OCT-1993) Gast R.J., The Ohio State University, Molecular Genetics, 484 West 12th Avenue, Columbus, OH 43210, USA FEATURES Location/Qualifiers source 1..519 /organism="Acanthamoeba griffini" /strain="S-7 ATCC 30731" /db_xref="taxon:29195" intron 1..519 /standard_name="nuclear small subunit ribosomal gene group I intron" /note="intron occurs in loop 20/21 (formerly stem 19) in nuclear srDNA secondary structure model." BASE COUNT 159 a 104 c 123 g 133 t ------------------------------------------------------------------------- LOCUS AGU07412 2812 bp DNA INV 28-JAN-1997 DEFINITION Acanthamoeba griffini S-7 ATCC 30731 18S rRNA gene. ACCESSION U07412 VERSION U07412.1 GI:507408 KEYWORDS . SOURCE Acanthamoeba griffini. ORGANISM Acanthamoeba griffini Eukaryota; Acanthamoebidae; Acanthamoeba. REFERENCE 1 (bases 1 to 519) AUTHORS Gast,R.J., Fuerst,P.A. and Byers,T.J. TITLE Discovery of group I introns in the nuclear small subunit ribosomal RNA genes of Acanthamoeba JOURNAL Nucleic Acids Res. 22 (4), 592-596 (1994) MEDLINE 94173725 REFERENCE 2 (bases 1 to 2812) AUTHORS Gast,R.J., Ledee,D.R., Fuerst,P.A. and Byers,T.J. TITLE Subgenus systematics of Acanthamoeba: four nuclear 18S rDNA sequence types JOURNAL J. Eukaryot. Microbiol. 43 (6), 498-504 (1996) MEDLINE 97130909 REFERENCE 3 (bases 1 to 2812) AUTHORS Gast,R.J. TITLE Direct Submission JOURNAL Submitted (05-MAR-1994) Rebecca J. Gast, The Ohio State University, Molecular Genetics, 484 West 12th Avenue, Columbus, OH 43210, USA FEATURES Location/Qualifiers source 1..2812 /organism="Acanthamoeba griffini" /strain="S-7 ATCC 30731" /db_xref="taxon:29195" primer_bind 1..23 /note="PCR amplification primer" /citation=[2] rRNA join(24..638,1157..2789) /citation=[2] /product="18S ribosomal RNA" intron 639..1156 /note="group I intron" /citation=[1] primer_bind 2788..2812 /note="PCR amplification primer" /citation=[2] BASE COUNT 711 a 622 c 757 g 722 t BASE COUNT 163 a 112 c 133 g 136 t 4013 others ORIGIN 1 |gggcaaguc uggU||u--- -------(-- --aacauauu auc------- ---------- 61 ---------- ---------- --)------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- ---------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 -------|-- ----a|Gcca ga--|----- ---------- ---|uguuga uaucauac-- 781 ---------- ---------- --------(u acacac---a caacagagua cu-------- 841 --acuagugc ugcu-cuc-u uguuguugug ggu------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------g ugugaua-u- 961 ----u--ggc a|--gaaa-- -----|guu- gg-------- ---------- ---------- 1021 --(aga---- ---------- ---------- ---------u aagca----- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 ---------- ---------- ---------- ---------- ---------- ---------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- ---------- -)-------- ---------- 1561 ---------- ---------- ---------- ---------- ---------- ---------- 1621 ---------- --c--caac| UGUA|CA-C- C-G-U|AAAU |UG--C-GGG |AAAC----| 1681 C-CC------ ---------- ---------- -|U------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- --------AA AG|------C 1801 CU-------- AU-UC|U-AC C|-------- ---------- ---------- ---------- 1861 ---|GCG-G- CU-A-U---- -G-AG-(gau ga-------- ---------- ---------- 1921 ---------- -)-CUC--AU --A-G---U- G-C|agca|G G-U-GUG-G- (auaa-cg-- 1981 ---------- --------)- CC-C-A--C- C|-------G GA-U|GGU-A AUA-AC-GA- 2041 AU--A-GG-| -A-------- ------|uga ccuuaguacc ucca--uaag cauaa----- 2101 -------uaa uaacaaaagg ucg|---caa u|-------- ---------- ---------- 2161 ---------- ---------- ---------- --GGG|-CAA -|UC-CGCA| GCC|-AAg-- 2221 |CUCCca--- ------(uau gc-------- ---------- ---------- ---------- 2281 ---------- ----)|-|-| ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- -------|-- 2461 ---------- -----|-|-- --------ug GGAG|--AA| GGU|--UCA| GA-GACU-A| 2521 -UAA|UCG-G --A-UG|G|G C--------- ---------- -(gcaa---- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ------GCU- |UAA-GG-UA |UA-GUC|C| A|CU-----| cc---|cacu uc-------- 2761 ----(-GAAA ---------- )--------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---------- ---------- 2881 --|------- ga--g-g-u- g|-------- --|-cuauaa aacu------ ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- -|----auua a--|gaagu- ----(--uug 3121 cuu------- ---------- ---------- ---------- ---------- ---------- 3181 ---------- ---------- -----)---- a-cuuc|--- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ---------- ---------- ---------- ---------- ---------- ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- --|---cua- g--|------ ---------- ggu---uuua 4021 uag|------ ---------- ---------- ---------- ---------- ---------- 4081 ---------a uccguugcuu guauauauac aacauacgug aguguguggu guauacauca 4141 auaccccca- aggaaaugcu ugguuggaa- ---------- ---------- ---------- 4201 ---------- ---------- ---------- ---------- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------g --augguagc a--------| -----AG|G- -||gcc-agc agccgc| // LOCUS Aca.g.2.1 4557 bp RNA RNA 28-JAN-191 DEFINITION Acanthamoeba griffini. ACCESSION No information KEYWORDS No information. SOURCE Acanthamoeba griffini. ORGANISM Acanthamoeba griffini. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 4557) Corresponding GenBank entry: S81337 LOCUS S81337 2781 bp DNA INV 30-MAY-1996 DEFINITION 18S rRNA [Acanthamoeba griffini, H37, Genomic, 2781 nt]. ACCESSION S81337 VERSION S81337.1 GI:1336827 KEYWORDS . SOURCE Acanthamoeba griffini H37. ORGANISM Acanthamoeba griffini Eukaryota; Acanthamoebidae; Acanthamoeba. REFERENCE 1 (bases 1 to 2781) AUTHORS Ledee,D.R., Hay,J., Byers,T.J., Seal,D.V. and Kirkness,C.M. TITLE Acanthamoeba griffini. Molecular characterization of a new corneal pathogen JOURNAL Invest. Ophthalmol. Vis. Sci. 37 (4), 544-550 (1996) MEDLINE 96176527 REMARK GenBank staff at the National Library of Medicine created this entry [NCBI gibbsq 176566] from the original journal article. This sequence comes from Fig. 4. FEATURES Location/Qualifiers source 1..2781 /organism="Acanthamoeba griffini" /db_xref="taxon:29195" rRNA 1..2781 /gene="18S rRNA" gene 1..2781 /gene="18S rRNA" BASE COUNT 708 a 615 c 750 g 708 t BASE COUNT 159 a 105 c 130 g 126 t 4037 others ORIGIN 1 |gggcaaguc uggU||u--- -------(-- --aacaua-- g-c------- ---------- 61 ---------- ---------- --)------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- ---------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 -------|-- ----a|Gcca ga--|----- ---------- ---|uguuga uaucauac-- 781 ---------- ---------- --------(a augcau---g agagagagua cu-------- 841 --auuag--- ugcu-cuc-u uguugu---- ggu------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------g ugugaua-u- 961 ----u--ggc a|--gaaa-- -----|guu- gg-------- ---------- ---------- 1021 --(aga---- ---------- ---------- ---------u aagca----- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 ---------- ---------- ---------- ---------- ---------- ---------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- ---------- -)-------- ---------- 1561 ---------- ---------- ---------- ---------- ---------- ---------- 1621 ---------- --c--caac| UGUA|CAAC- C-G-U|AAAU |UG--C-GGG |AAAC----| 1681 C-CC------ ---------- ---------- -|U------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- --------AA AG|------C 1801 CU-------- AU-UC|U-AC C|-------- ---------- ---------- ---------- 1861 ---|GCG-G- CU-A-U---- -G-AG-(gau ga-------- ---------- ---------- 1921 ---------- -)-CUC--AU --A-G---U- G-C|agca|G G-U-GCG-G- (auaa-cg-- 1981 ---------- --------)- CC-C-A--C- C|-------G GA-U|GGU-A AUA-AC-GA- 2041 AU--A-GG-| -A-------- ------|uga ccuuaguacc ucca------ cauaaca--- 2101 -------uaa uaacaaaagg uca|---caa u|-------- ---------- ---------- 2161 ---------- ---------- ---------- --GGG|-CAA -|UC-CGCA| GCC|-AAg-- 2221 |CUCCca--- ------(uau gu-------- ---------- ---------- ---------- 2281 ---------- ----)|-|-| ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- -----|-|-- --------ug GGAG|--AA| GGU|--UCA| GA-GACU-A| 2521 -UAA|UCG-G --A-UG|G|G C--------- ---------- -(gcaa---- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ------GCU- |UAA-GG-UA |UA-GUC|C| A|CU-----| cc---|cacu uc-------- 2761 ----(-GAAA ---------- )--------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---------- ---------- 2881 --|------- ga--g-g-u- g|-------- --|-cuauaa agcu------ ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- -|----auua a--|gaagu- ----(--uug 3121 cuu------- ---------- ---------- ---------- ---------- ---------- 3181 ---------- ---------- -----)---- a-cuuc|--- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ---------- ---------- ---------- ---------- ---------- ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- --|---cua- g--|------ ---------- ggu---uuua 4021 uag|------ ---------- ---------- ---------- ---------- ---------- 4081 ---------a uccguugcuu guaua----c aauauac--- --------gu guauacauca 4141 auaccccaag aggaaaugcu ugguuggaa- ---------- ---------- ---------- 4201 ---------- ---------- ---------- ---------- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 --------gg --augguagc a--------| -----AG|G- -||gcc-agc agccgc| // LOCUS Aur.l.1.1 4557 bp RNA RNA 28-JAN-191 DEFINITION Aureoumbra lagunensis. ACCESSION No information KEYWORDS No information. SOURCE Aureoumbra lagunensis. ORGANISM Aureoumbra lagunensis. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 4557) Corresponding GenBank entry: U40258 LOCUS ALU40258 2236 bp DNA PLN 10-DEC-1995 DEFINITION Aureomonas lagunensis 18S ribosomal RNA gene sequence. ACCESSION U40258 KEYWORDS . SOURCE Aureomonas lagunensis. ORGANISM Aureomonas lagunensis Eukaryotae; mitochondrial eukaryotes; stramenopiles; Pelagophyceae; Aureomonas. REFERENCE 1 (bases 1 to 2236) AUTHORS DeYoe,H.R., Chan,A.M. and Suttle,C.A. TITLE Phylogeny of Aureococcus anophagefferens and a morphologically similar bloom-forming alga from Texas as determined by 18S ribosomal RNA sequence analysis JOURNAL J. Phycol. 31 (3), 413-418 (1995) REFERENCE 2 (bases 1 to 2236) AUTHORS DeYoe,H.R. TITLE Direct Submission JOURNAL Submitted (06-NOV-1995) Hudson R. DeYoe, University of Texas Marine Science Institute, P.O. Box 1267, Port Aransas, TX 78373, USA COMMENT NCBI gi: 1110500 FEATURES Location/Qualifiers source 1..2236 /strain="TBA" /organism="Aureomonas lagunensis" /note="Stockwell et DeYoe" rRNA 1..2236 /product="18S ribosomal RNA" misc_feature 572..995 /note="insertion sequence found in this alga but not in other closely related organisms" BASE COUNT 603 a 461 c 603 g 561 t 8 others ORIGIN BASE COUNT 137 a 99 c 124 g 83 t 4114 others ORIGIN 1 |gggcaaguc uggU||g--- ---------- --aaccgcuu uuanuagcac caaagcccgc 61 cguaaaaaaa aancau---- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- ---------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 ---------- ----a|Gcca ga--|----- ---------- ---|ugucg- ---------- 781 ---------- ---------- --------(g aaa------- ---------- ---------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 -----cnggc a|--acg--- -----|uca- ugg------- ---------- ---------- 1021 --(-aa---- ---------- ---------- ---------a aauuucucga gca------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 ---------- ---------- ---------- ---------- ---------- ---------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- ---------- ---------- ---------- 1561 ---------- ---------- ---------- ---------- ---------- ---------- 1621 ---------- --cc-auga| --UA|CACU- U-G-U|AAAU |UG--C-GGG |AAAC----| 1681 U-CU------ ---------- ---------- -|uga----- ---------- ---------- 1741 ---------- ---------- ---------- ---------- --------UA AG|------C 1801 CU-------- CA-CA|U-AC C|c------- ---------- ---------- ---------- 1861 ---|GsG-U- CC-------- ------(--- ------cgcc (ggaga)ggu uagauuua(g 1921 uaa)uagauc a)-------- --G-G-A-U- G-C|agca|G U-G-G-G-U- (guaa-ug-- 1981 ---------- --------)- GC-C-C--A- C|-------G GA-U|GGU-A AAA-AC-UG- 2041 UG--A-GG-| -aua------ ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- g-AGA|-CAA -|UC-CGCA| GCC|-AAg-- 2221 |Cguc----- ------(--- ---------- ---------- ---------- ---------- 2281 ---------- ----)|-|a| ------|ccu ---------- ---------- ---------- 2341 (u-uga-a-- ---------- ---------- ---------- ---------- ---------- 2401 -------)-- ---------- ---------- ---------- ---------- ---------- 2461 ---------a gg-|a|-|-- ---------- gaUG|--GA| GGU|--UCA| GA-GACU-A| 2521 -UAA|UCA-G --G-UG|G|G C--------- ---------- -(gcaa---- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ------GCU- |UAA-GG-UA |UA-GUC|C| A|GU-----| c----|cacc cn-------- 2761 ----(-ggaa ---------- )--------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---------- ---------- 2881 --|------- gg--g-g--- g|-------- --|-uccaau g--------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- -|-a-aguac ---|gggga- ----(--aau 3121 ucagcuca-- ---------- ---------- ---------- ---------- ---------- 3181 ---------- ---------- -----)---- u-cccc|--- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ---------- ---------- ---------- ---------- ---------- ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- --|--uagg- g--|------ ---------- ------cauu 4021 gga|------ -------g|g gaag-ugc-- ---------- ---------- ---------( 4081 acuacaagaa aa-------- ---------- ---------- ---------- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- --------|- -------gug c-ccuc|--- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------| ----ggua-g aa-------| -----AC|G- -||gcc-agc agccgc| // LOCUS Ban.f.1.1 4557 bp RNA RNA ~?~???? DEFINITION Bangia fuscopurpurea. ACCESSION No information KEYWORDS No information. SOURCE Bangia fuscopurpurea. ORGANISM Bangia fuscopurpurea. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 4557) Corresponding GenBank entry: AF342745 BASE COUNT 262 a 252 c 270 g 234 t 3539 others ORIGIN 1 |~~~caaguc uggU||g--- -------(-- --aacgcacg cgaguuccaa -ucuc----- 61 -cugcacaca ---------- ---------- ---------- ---------- ---------- 121 --cagcccuc --acu-aaca aaaaa--uca ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- ---------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 -------|-- ----c|Gcca ga--|----- ---------- -u-|gucg-- ---------- 781 ---------- ---------- --------(u cagccc---a uucucacaca gg-------- 841 --ucgugcug cucac(aaca aaa)gcaacc ggcacggccu uaguaucugc ga-------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------gg c|--aaa--- -----|ugau ucgcucg--- ---------- ---------- 1021 --(ugg---- ---------- ---------- ---------a gacuuguuug ggagugguug 1081 acgcccgugc ggugcagauc augcgguacu cccgcacugc gugucucauc cuugauacac 1141 ccagugaugg ucgauuuacg caaaaccagg uaaaacacuu uuacauuuac caggcggugg 1201 cauuucgcaa auucgggcgc aaccucaugg cuacugugcu ggccucaaaa gccaacacag 1261 accuuacgau uucucauguu ugugguguca gguuuu-cuu gaaugcuucc cacaugguuc 1321 ucgaacccaa gcaagugaau gauaaacgug ugcacugcca uguguuuuua gcauauauag 1381 cagauaacac gaagagacua gcucuugcug aagagcacug uccucauuca ccuaagugcu 1441 acacugucuc aaaacg---- -------ugg uuacggcaaa agaug----- ---------- 1501 ---------- ---------- ---------- ---------- -)-------g gcg-uu---- 1561 ---------- ---------- ---------- ---------- ---------- ---------- 1621 ----gagcuc c-c--auca| --UA|CACU- U-C-G|AAAU |UGU-C-GGG |GACG----| 1681 G-CC------ ---------- ---------- -|ccacaaag gac(uau--- ------cauu 1741 --------uu -)gucu---- ---------- ---------- ---uuua-GA AG|------C 1801 UC-------- UG-GC|U-AC C|-------- ---------- ---------- ---------- 1861 ---|GCGGU- CC-------- ------(--- -------gcc (-gaga)ggu aaaagcga(g 1921 caa)ucguuu a)-------- --G-G-A-U- G-C|agca|G U-G-C-A-C- (guaa-cg-- 1981 ---------- --------)- GU-G-C--A- U|-------G GA-U|GGU-A AAA-AC-GU- 2041 CA--G-U--| -guu------ ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- g-GGC|-UAA -|UC-CGCA| GGG|-AAg-- 2221 |CGC------ ------(--- ---------- ---------- ---------- ---------- 2281 ---------- ----)|-|g| au----|cau gugau----- ---------- ---------- 2341 (g-gau-gga ggaauagggg cauugg(cca g)ucaaucgu acuuguggcg gguacucguc 2401 uggucgg)-- ---------- ---------- ---------- ---------- -------|-- 2461 ---auca-ca ug-|a|a|g- ---------- -GCG|--AA| CCU|--UCA| GA-GACU-G| 2521 -UAA|UGG-A --G-UG|G|G C--------- ---------- -(gcaa---- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------) ---------- 2701 ------GCU- |UAA-GG-GA |CA-GUC|C| A|AU-----| c----|cccg gg-------- 2761 ----(-gcaa ---------- )--------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---------- ---------- 2881 --|------- cc--c-g--- g|-------- --|-uccaca g--------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- -|-g-aauag ---|agggu- ----(--uua 3121 -gcuc----- ---------- ---------- ---------- ---------- ---------- 3181 ---------- ---------- -----)---- g-cccu|--- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ---------- ---------- ---------- ---------- ---------- ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- --|-ugagg- a--|------ ---------- ------cugu 4021 gga|------ --------|g agga-gc--- ---------- ---------- ---------( 4081 acuaaagaaa ---------- ---------- ---------- ---------- ---------- 4141 -)-------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- --------|- --------gc u-cuuu|--- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------| ----ggua-g aa-------| -----AU|G- -||gcc-agc agccgc| // LOCUS Ban.a.1.1 4557 bp RNA RNA 05-NOV-1996 DEFINITION Bangia atropurpurea.; 18S ribosomal RNA. ACCESSION D88387 KEYWORDS 18S ribosomal RNA. SOURCE Bangia atropurpurea. ORGANISM Bangia atropurpurea. REFERENCE 1 (bases 1 to 3004) AUTHORS Saga,N. TITLE Direct Submission JOURNAL Japan (E-mail:nsaga@scc.u-tokai.ac.jp, Tel:0543-34-0411, Fax : 0543-34-9834) Submitted (14-OCT-1996) to the DDBJ/EMBL/GenBank databases. Naotsune Saga, Tokai University, Graduate School of Marine Science and Technology; 3-20-1 Orido, Shimizu, Shizuoka 424, STANDARD No information REFERENCE 2 (bases 1 to 3004) AUTHORS Shimomura,K., Yamazaki,S., Miyata,T. and Saga,N. TITLE Phylogenetic position of Bangia atropurpurea (Bangiales, Rhodophyta) based on the 18S rDNA sequence JOURNAL Unpublished (1997) STANDARD No information COMMENTS Sequence information (bases 1 to 4557) Corresponding GenBank entry: D88387 BASE COUNT 137 a 120 c 165 g 104 t 4031 others ORIGIN 1 |~~~caaguc uggU||g--- -------(-- --aacgcau- ---gcau--- ---------- 61 gcuuc----- ---------- ---------- ---------- ---------- ---------- 121 --aagcccuc --guuaaaau aaaa---ucg ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- ---------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 -------|-- ----c|Gcca gg--|----- ---------- -u-|gucguu ugu------- 781 ---------- ---------- --------(g gccaca---u caugcacaaa ga-------- 841 --ga------ ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --gcgagc-a c|--u----- -----|ugag cugu---gcu cu-gugu--- ---------- 1021 --(gug---- ---------- ---------- ---------u gu-------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 ---------- ---------- ---------- ---------- ---------- ---------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ------gugu guguc--gcg agccggcaaa auaugggaa- ---------- 1501 ---------- ---------- ---------- ---------- -)-------- -ac-aa---- 1561 ---------- ---------- ---------- ---------- ---------- ---------- 1621 ----gagccc c-c--auca| --UA|CACU- U-C-G|AAAU |UGU-C-GGG |GAGU----| 1681 G-CC------ ---------- ---------- -|Cgu----- ---------- ---------- 1741 ---------- ---------- ---------- ---------- --------UA AG|------C 1801 UU-------- UG-AC|U-AC C|-------- ---------- ---------- ---------- 1861 ---|GCGGU- CC-------- ------(--- -------gcc (-gaga)ggu gagggcga(g 1921 caa)ucgcuc a)-------- --G-G-A-C- G-C|agca|G U-G-UUA-C- (guag-ug-- 1981 ---------- --------)- GU-A-C--A- C|-------G GA-U|GGU-A AAA-AC-GU- 2041 CA--A-AG-| -aua------ ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- g-GGU|-UGA -|UC-CGCA| GGG|-AAg-- 2221 |CGC------ ------(--- ---------- ---------- ---------- ---------- 2281 ---------- ----)|-|g| ag----|ugc ucaugug--- ---------- ---------- 2341 (--------- uuug------ ---------- ---------- ---------- ---------- 2401 -------)-- ---------- ---------- ---------- ---------- -------|-- 2461 -ugugug-ag ca-|a|a|g- ---------- -GCG|--AA| CCU|--UCA| GA-GACU-C| 2521 -UAA|UGA-A --G-UG|G|G C--------- ---------- -(gaaa---- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------) ---------- 2701 ------GCU- |UAA-GG-GA |GA-GUC|C| A|AU-----| c----|cacg gg-------- 2761 ----(-GAGA ---------- )--------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---------- ---------- 2881 --|------- cc--c-g--- g|-------- --|-uccaca g--------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- -|-g-aguaa ---|ggggg- ----(--cgc 3121 ugcuca---- ---------- ---------- ---------- ---------- ---------- 3181 ---------- ---------- -----)---- c-cccc|--- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ---------- ---------- ---------- ---------- ---------- ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- --|--gagg- a--|------ ---------- ------cugu 4021 gga|------ --------|u gaag-acaga cagac----- ---------- ---------( 4081 acagaaga-- ---------- ---------- ---------- ---------- ---------- 4141 -)-------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- --------|- --gucuaugu c-uuca|--- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------| ----gguagu ca-------| -----AU|G- -||gcc-agc agccgc| // LOCUS Por.sp.5.1 4557 bp RNA RNA 25-JUL-1999 DEFINITION Porphyra sp. str. BRU107. ACCESSION No information KEYWORDS No information. SOURCE Porphyra sp. str. BRU107. ORGANISM Porphyra sp. REFERENCE 1 (bases 1 to 3004) AUTHORS .A. TITLE sequencing JOURNAL J. Appl. Phycol. (1999) In press STANDARD No information COMMENTS Sequence information (bases 1 to 4557) Corresponding GenBank entry: AF136418,AF136419 LOCUS PSBRU107G1 744 bp DNA PLN 25-JUL-1999 DEFINITION Porphyra sp. strain BRU107 18S ribosomal RNA gene, 5' sequence. ACCESSION AF136418 NID g5579316 VERSION AF136418.1 GI:5579316 KEYWORDS . SOURCE Porphyra sp. ORGANISM Porphyra sp. Eukaryota; Rhodophyta; Bangiophyceae; Bangiales; Bangiaceae; Porphyra. REFERENCE 1 (bases 1 to 744) AUTHORS Broom,J.E., Jones,W.A., Hill,D.F., Knight,G.A. and Nelson,W.A. TITLE Species recognition in New Zealand Porphyra using 18S rDNA sequencing JOURNAL J. Appl. Phycol. (1999) In press REFERENCE 2 (bases 1 to 744) AUTHORS Broom,J.E., Jones,W.A., Hill,D.F., Knight,G.A. and Nelson,W.A. TITLE Direct Submission JOURNAL Submitted (19-MAR-1999) Department of Biochemistry, University of Otago, PO Box 56, Dunedin, New Zealand FEATURES Location/Qualifiers source 1..744 /organism="Porphyra sp." /strain="BRU107" /db_xref="taxon:2790" /dev_stage="gametophyte" /country="New Zealand: Bruce's Rock, Otago, 45 59S, 170 17E" rRNA join(<1..575,AF136419.1:469..>1712) /product="18S ribosomal RNA" intron 576..>744 /note="putative group I" BASE COUNT 200 a 150 c 191 g 192 t 11 others -------------------------------------------------------------------------- LOCUS PSBRU107G2 2269 bp DNA PLN 25-JUL-1999 DEFINITION Porphyra sp. strain BRU107 18S ribosomal RNA gene, 3' sequence. ACCESSION AF136419 NID g5579317 VERSION AF136419.1 GI:5579317 KEYWORDS . SOURCE Porphyra sp. ORGANISM Porphyra sp. Eukaryota; Rhodophyta; Bangiophyceae; Bangiales; Bangiaceae; Porphyra. REFERENCE 1 (bases 1 to 2269) AUTHORS Broom,J.E., Jones,W.A., Hill,D.F., Knight,G.A. and Nelson,W.A. TITLE Species recognition in New Zealand Porphyra using 18S rDNA sequencing JOURNAL J. Appl. Phycol. (1999) In press REFERENCE 2 (bases 1 to 2269) AUTHORS Broom,J.E., Jones,W.A., Hill,D.F., Knight,G.A. and Nelson,W.A. TITLE Direct Submission JOURNAL Submitted (19-MAR-1999) Department of Biochemistry, University of Otago, PO Box 56, Dunedin, New Zealand FEATURES Location/Qualifiers source 1..2269 /organism="Porphyra sp." /strain="BRU107" /db_xref="taxon:2790" /dev_stage="gametophyte" /country="New Zealand: Bruce's Rock, Otago, 45 59S, 170 17E" intron <1..468 /note="putative group I" intron 1713..>2269 /note="putative group I" rRNA join(AF136418.1:<1..575,469..>1712) /product="18S ribosomal RNA" BASE COUNT 547 a 513 c 660 g 536 t 13 others BASE COUNT 142 a 147 c 205 g 145 t 3918 others ORIGIN 1 |gggcaaguc uggU||g--- -------(-- --aacacac- ---------- --g-----gn 61 gguucggnuu auucauucau caaaaagcgg augaagaaga gccggunugg nuuu------ 121 --aagcccuu cuuuauuaac caauuaaacg gg-------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- ---------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 -------|-- ----c|Gcca ga--|----- ---------- -u-|gun--- ---------- 781 ---------- ---------- --------(u ---aa----- ---------- ---------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------gg c|--ug---- -----|nggc cgcu--ucuu uc-uuuu--- -----nuuuc 1021 uncuna---- ---------- ---------- ---------u ngaugagaug gggggggggg 1081 gg-------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 ---------- ---------- ---------- ---------- ---------- ---------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ------gggg cugaggcaaa agguaggaa- ---ccca--- 1501 cucun--aua auccaaccgc cuuuuuuuau ugguauuggg uugaugagug cgu------- 1561 ---------- ---------- ---------- ---------- ---------- ---------- 1621 ----gagccc n-n--ucca| --UA|CACC- U-N-U|AAAU |UGU-N-NGN |aaag----| 1681 G-CA------ ---------- ---------- -|ccauu--- ---------- ---------- 1741 ---------- ---------- ---------- ---------- --------UA GG|------C 1801 UU-------- UG-AC|U-AC C|-------- ---------- ---------- ---------- 1861 ---|GCAGU- CC-------- ------(--- -------ncc (-naga)ggu ugggacgg(g 1921 cnn)ccguuc a)-------- --G-G-A-U- G-U|agca|G C-G-C-A-C- (guaa-ug-- 1981 ---------- --------)- GU-G-C--G- U|-------G GA-U|GGU-A AGA-AC-GU- 2041 CA--A-GG-| -aua------ ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- g-GGC|-CAA -|UC-CGCA| GGG|-AAg-- 2221 |CGC------ ------(--- ---------- ---------- ---------- ---------- 2281 ---------- ----)|u|g| au----|uga cggcc----- ---------- ---------- 2341 (g-gcc-uuu ugaug----- ---------- ---------- ---------- ---------- 2401 -------)-- ---------- ---------- ---------- ---------- ---------- 2461 -ggggcc-gu ca-|a|a|g- ---------- -GCG|--AA| CCU|--UCA| GA-GACU-C| 2521 -UAA|UGG-G --G-UG|G|G C--------- ---------- -(gcaa---- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------) ---------- 2701 ------GCU- |UAA-GG-GA |GA-GUC|C| A|AU-----| c----|cacg gg-------- 2761 ----(-gaga ---------- )--------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---------- ---------- 2881 --|------- nc--c-g--- g|-------- --|-uccnca g--------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- -|-g-caua- g--|ggggc- uu--(--u-- 3121 -gc------- ---------- ---------- ---------- ---------- ---------- 3181 ---------- ---------- -----)--ua g-cccc|--- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ---------- ---------- ---------- ---------- ---------- ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- --|-ugagg- a--|------ ---------- ------cugu 4021 gga|------ --------|a aggg-ggcgc cca------- ---------- ---------( 4081 aucc------ ---------- ---------- ---------- ---------- ---------- 4141 -)-------| ccacaccccc -----cccgc gggggug|g- ---------- ---------- 4201 ---------- --------|u ggugggugcc c-uuuu|--- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------| ---gguauaa uaucaaucu| -----AU|G- -||gcc-agc agccgc| // LOCUS Por.li.1.1 4557 bp RNA RNA 25-JUL-1999 DEFINITION Porphyra lilliputiana.. ACCESSION No information KEYWORDS No information. SOURCE Porphyra lilliputiana. ORGANISM Porphyra lilliputiana. REFERENCE 1 (bases 1 to 3004) AUTHORS . Broom,J.E., Jones,W.A., Hill,D.F., Knight,G.A. and Nelson,W.A TITLE sequencing Species recognition in New Zealand Porphyra using 18S rDNA JOURNAL J. Appl. Phycol. (1999) In press STANDARD No information COMMENTS Sequence information (bases 1 to 4557) Corresponding GenBank entry: AF136424 LOCUS AF136424 2804 bp DNA PLN 25-JUL-1999 DEFINITION Porphyra lilliputiana 18S ribosomal RNA gene, partial sequence. ACCESSION AF136424 NID g5579323 VERSION AF136424.1 GI:5579323 KEYWORDS . SOURCE Porphyra lilliputiana. ORGANISM Porphyra lilliputiana Eukaryota; Rhodophyta; Bangiophyceae; Bangiales; Bangiaceae; Porphyra. REFERENCE 1 (bases 1 to 2804) AUTHORS Broom,J.E., Jones,W.A., Hill,D.F., Knight,G.A. and Nelson,W.A. TITLE Species recognition in New Zealand Porphyra using 18S rDNA sequencing JOURNAL J. Appl. Phycol. (1999) In press REFERENCE 2 (bases 1 to 2804) AUTHORS Broom,J.E., Jones,W.A., Hill,D.F., Knight,G.A. and Nelson,W.A. TITLE Direct Submission JOURNAL Submitted (19-MAR-1999) Department of Biochemistry, University of Otago, PO Box 56, Dunedin, New Zealand FEATURES Location/Qualifiers source 1..2804 /organism="Porphyra lilliputiana" /db_xref="taxon:99748" /dev_stage="gametophyte" /country="New Zealand: Wellington 41 21S, 174 47E" rRNA join(<1..546,1039..>2277) /product="18S ribosomal RNA" intron 547..1038 /note="putative group I" intron 2278..2804 /note="putative group I" BASE COUNT 720 a 613 c 790 g 668 t 13 others BASE COUNT 136 a 125 c 164 g 91 t 4041 others ORIGIN 1 |gggcaaguc uggU||g--- -------(-- --aacgcac- ---acac--- --auacaca- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 --aagcccgc --cugaaaaa aaaa----cg g--------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- ---------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 -------|-- ----c|Gcca ga--|----- ---------- -u-|guc--- ---------- 781 ---------- ---------- --------(u ucuccc---c u--------- ---------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------gg c|-------- -----|ugga -cuaggaaca ga-ac----- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 ---------- ---------- ---------- ---------- ---------- ---------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- gggac-gggg agggggcaaa aggugggaaa ccguc--ugu 1501 cucuuuucgu gaagagacg- ---------- ---------- -)-------- -----a---- 1561 ---------- ---------- ---------- ---------- ---------- ---------- 1621 ----gagccc c-c--ncca| --UA|CACU- U-U-G|AAAU |UGU-C-GGG |GAGU----| 1681 G-CC------ ---------- ---------- -|Ugu----- ---------- ---------- 1741 ---------- ---------- ---------- ---------- --------UA GG|------C 1801 CUuu------ UG-AC|U-AC C|-------- ---------- ---------- ---------- 1861 ---|GCGGU- CC-------- ------(--- -------gcc (-gaga)ggu gagggcga(g 1921 caa)ucgccc a)-------- --G-G-A-C- G-C|agca|G U-G-C-A-U- (guaa-cg-- 1981 ---------- --------)- GU-G-C--A- U|-------G GA-A|GGU-A AAA-AC-GU- 2041 CAA-A-GG-| -aua------ ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- g-GGU|-UGA -|UC-CGCA| GGG|-AAg-- 2221 |CGC------ ------(--- ---------- ---------- ---------- ---------- 2281 ---------- ----)|-|g| ag----|ugc aguguu---- ---------- ---------- 2341 (u-uug-uau ---------- ---------- ---------- ---------- ---------- 2401 -------)-- ---------- ---------- ---------- ---------- -------|-- 2461 -ugacac-ug ca-|a|a|g- ---------- -GCG|--AA| CCU|--UCA| GA-GACU-C| 2521 -UAA|UAA-A --G-UG|G|G C--------- ---------- -(gcaa---- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------) ---------- 2701 ------GCU- |UAA-GG-GA |GA-GUC|C| A|AU-----| c----|cacu gg-------- 2761 ----(-gaaa ---------- )--------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---------- ---------- 2881 --|------- cc--a-g--- g|-------- --|-uccaca g--------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- -|-g-aguaa u--|gggguc ga--(--ug- 3121 -gc------- ---------- ---------- ---------- ---------- ---------- 3181 ---------- ---------- -----)--uc g-cccc|--- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ---------- ---------- ---------- ---------- ---------- ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- --|-agagg- a--|------ ---------- ------cugu 4021 gga|------ --------|a ggca-c---- -cacc----- ---------- ---------( 4081 -cucca---- ---------- ---------- ---------- ---------- ---------- 4141 -)-------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- --------|- -ggug----a u-gucg|--- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------| ----gguuau gc-------| -----AU|G- -||gcc-agc agccgc| // LOCUS Por.sp.4.1 4557 bp RNA RNA 25-JUL-1999 DEFINITION Porphyra sp.GRB108. ACCESSION No information KEYWORDS No information. SOURCE Porphyra sp.GRB108. ORGANISM Porphyra sp.GRB108. REFERENCE 1 (bases 1 to 3004) AUTHORS . Broom,J.E., Jones,W.A., Hill,D.F., Knight,G.A. and Nelson,W.A TITLE sequencing Species recognition in New Zealand Porphyra using 18S rDNA JOURNAL J. Appl. Phycol. (1999) In press STANDARD No information COMMENTS Sequence information (bases 1 to 4557) Corresponding GenBank entry: AF136420 LOCUS AF136420 2845 bp DNA PLN 25-JUL-1999 DEFINITION Porphyra sp. isolate GRB108 18S ribosomal RNA gene, partial sequence. ACCESSION AF136420 NID g5579319 VERSION AF136420.1 GI:5579319 KEYWORDS . SOURCE Porphyra sp. ORGANISM Porphyra sp. Eukaryota; Rhodophyta; Bangiophyceae; Bangiales; Bangiaceae; Porphyra. REFERENCE 1 (bases 1 to 2845) AUTHORS Broom,J.E., Jones,W.A., Hill,D.F., Knight,G.A. and Nelson,W.A. TITLE Species recognition in New Zealand Porphyra using 18S rDNA sequencing JOURNAL J. Appl. Phycol. (1999) In press REFERENCE 2 (bases 1 to 2845) AUTHORS Broom,J.E., Jones,W.A., Hill,D.F., Knight,G.A. and Nelson,W.A. TITLE Direct Submission JOURNAL Submitted (19-MAR-1999) Department of Biochemistry, University of Otago, PO Box 56, Dunedin, New Zealand FEATURES Location/Qualifiers source 1..2845 /organism="Porphyra sp." /isolate="GRB108" /db_xref="taxon:2790" /dev_stage="gametophyte" /country="New Zealand: Otago 45 08S, 171 58E" rRNA join(<1..549,1109..>2336) /product="18S ribosomal RNA" intron 550..1108 /note="putative group I" intron 2337..>2845 /note="putative group I" BASE COUNT 740 a 616 c 796 g 692 t 1 others BASE COUNT 150 a 144 c 182 g 108 t 3973 others ORIGIN 1 |gggcaaguc uggU||g--- -------(-- --aacacga- ---gcac--- ---------- 61 ---------a gguuccacau auaccuugcc gcacac---- ---------- ---------- 121 ---agcccuc --ucuaaaca aaaa----cu ca-------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- ---------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 -------|-- ----c|Gcca ga--|----- ---------- -u-|guc--- ---------- 781 ---------- ---------- --------(g uc-------- ---------- ---------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------gg c|--aggguc cgucu|ugga accaagucug a--------- ---------- 1021 -gaugg---- ---------- ---------- ---------a ccuugu---- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 ---------- ---------- ---------- ---------- ---------- ---------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- -------ggg a-auggcaaa agauggg--- ---------- 1501 -gaacu---- ---------- ---------- ---------- ---------- ---------- 1561 ---------- ---------- ---------- ---------- ---------- ---------- 1621 ----gagcuc c-c--auca| --UA|CACU- U-C-G|AAAU |UGU-C-GGG |AACG----| 1681 A-CC------ ---------- ---------- -|U-ggaagg gaggagagac ugcgc----- 1741 ---ucucucc cacuuc---- ---------- ---------- ---caa--AA GG|------C 1801 UU-------- UG-GC|U-AC C|-------- ---------- ---------- ---------- 1861 ---|GCGGU- CC-------- ------(--- -------gcc (-gaga)ggu gagggcga(g 1921 caa)ucgucc a)-------- --G-G-A-C- G-C|agca|G U-G-C-A-C- (guag-ug-- 1981 ---------- --------)- GU-G-C--A- C|-------G GA-U|GGU-A AAA-AC-GC- 2041 CA--A-GG-| -uag------ ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- g-GGU|-UAA -|UC-CGCA| GGG|-AAg-- 2221 |CGC------ ------(--- ---------- ---------- ---------- ---------- 2281 ---------- ----)|-|g| ag----|cac gugac----- ---------- ---------- 2341 (u-ugg-gaa aaggauguac gacgcuguaa cuagaggaca gcgcuucguc uugcccucgu 2401 -------)-- ---------- ---------- ---------- ---------- ---------- 2461 ---guca-cg ug-|a|a|g- ---------- -GCG|--AA| CCU|--UCA| GA-GACU-G| 2521 -UAA|UGG-A --G-UG|G|G C--------- ---------- -(gaaa---- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------) ---------- 2701 ------GCU- |UAA-GG-GA |CA-GUC|C| A|AU-----| c----|cacg gg-------- 2761 ----(-gcaa ---------- )--------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---------- ---------- 2881 --|------- cc--c-g--- g|-------- --|-uccaca g--------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- -|-g-aaua- g--|agggu- gu--(--a-- 3121 -gc------- ---------- ---------- ---------- ---------- ---------- 3181 ---------- ---------- -----)--uc g-ccuu|--- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ---------- ---------- ---------- ---------- ---------- ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- --|-ugagg- a--|------ ---------- ------cugu 4021 gga|------ --------|- gagu-ga--- ---------- ---------- ---------( 4081 ugu------- ---------- ---------- ---------- ---------- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- --------|- --------uc a-cuc-|--- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------| ----ggu-au ua-------| -----AU|G- -||gcc-agc agccgc| // LOCUS Por.sp.6.1 4557 bp RNA RNA 25-JUL-1999 DEFINITION Porphyra sp.. ACCESSION No information KEYWORDS No information. SOURCE Porphyra sp. ORGANISM Porphyra sp. REFERENCE 1 (bases 1 to 3004) AUTHORS Broom,J.E., Jones,W.A., Hill,D.F., Knight,G.A. and Nelson,W.A . TITLE Species recognition in New Zealand Porphyra using 18S rDNA sequencing JOURNAL J. Appl. Phycol. (1999) In press STANDARD No information COMMENTS Sequence information (bases 1 to 4557) Corresponding GenBank entry: AF136425 LOCUS AF136425 2835 bp DNA PLN 25-JUL-1999 DEFINITION Porphyra sp. isolate RAK049 18S ribosomal RNA gene, partial sequence. ACCESSION AF136425 NID g5579324 VERSION AF136425.1 GI:5579324 KEYWORDS . SOURCE Porphyra sp. ORGANISM Porphyra sp. Eukaryota; Rhodophyta; Bangiophyceae; Bangiales; Bangiaceae; Porphyra. REFERENCE 1 (bases 1 to 2835) AUTHORS Broom,J.E., Jones,W.A., Hill,D.F., Knight,G.A. and Nelson,W.A. TITLE Species recognition in New Zealand Porphyra using 18S rDNA sequencing JOURNAL J. Appl. Phycol. (1999) In press REFERENCE 2 (bases 1 to 2835) AUTHORS Broom,J.E., Jones,W.A., Hill,D.F., Knight,G.A. and Nelson,W.A. TITLE Direct Submission JOURNAL Submitted (19-MAR-1999) Department of Biochemistry, University of Otago, PO Box 56, Dunedin, New Zealand FEATURES Location/Qualifiers source 1..2835 /organism="Porphyra sp." /isolate="RAK049" /db_xref="taxon:2790" /dev_stage="gametophyte" /country="New Zealand: Kaikoura 42 31S, 173 30E" rRNA join(<1..546,1088..>2229) /product="18S ribosomal RNA" intron 547..1087 /note="putative group I" intron 2230..>2835 /note="putative group I" BASE COUNT 725 a 639 c 813 g 658 t BASE COUNT 158 a 135 c 181 g 93 t 3990 others ORIGIN 1 |gggcaaguc uggU||g--- -------(-- --aacguau- ---gcau--- --ca------ 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 --aagcccuc --guuaaaaa aaaa----ca g--------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- ---------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 -------|-- ----c|Gcca ga--|----- ---------- -u-|guc--- ---------- 781 ---------- ---------- --------(u cuuccu---g gaagca---- ---------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------gg c|--caugca -----|ugg- -guucaugc- ----gug--- -----ugaug 1021 accugu---- ---------- ---------- ---------g gaaggc---- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 ---------- ---------- ---------- ---------- ---------- ---------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- --------gg ag-aggcaga cgaugggaa- ccg---agg- 1501 --cuu-augg aaaga----- -----aaaac caaaagccac a--------- ---------- 1561 ---------- ---------- ---------- ---------- ---------- ---------- 1621 ----gagccc c-c--auca| --UA|CACU- U-C-U|AAAU |UGU-C-GGG |GAGU----| 1681 G-CC------ ---------- ---------- -|Cgu----- ---------- ---------- 1741 ---------- ---------- ---------- ---------- --------AA AG|------C 1801 CU-------- UG-GC|U-AC C|-------- ---------- ---------- ---------- 1861 ---|GCGGU- CC-------- ------(--- -------gcc (-gaga)ggu gagagcga(g 1921 uaa)ucguuc a)-------- --G-G-A-C- G-C|agca|G U-G-U-A-C- (guag-ug-- 1981 ---------- --------)- GU-A-C--A- U|-------G GA-U|GGU-A AAA-AC-GU- 2041 CAA-A-GG-| -aua------ ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- g-GGU|-UGA -|UC-CGCA| GGG|-AAg-- 2221 |CGC------ ------(--- ---------- ---------- ---------- ---------- 2281 ---------- ----)|-|g| ag----|ugc ucugccu--- ---------- ---------- 2341 (a-cua-ccg ccccuugggg caaaaaaa-- ---------- ---------- ---------- 2401 -------)-- ---------- ---------- ---------- ---------- ---------- 2461 --gggca-ag ca-|a|a|g- ---------- -GCG|--AA| CCU|--UCA| GA-GACU-C| 2521 -UAA|UGG-A --G-UG|G|G C--------- ---------- -(gcaa---- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------) ---------- 2701 ------GCU- |UAA-GG-GA |GA-GUC|C| A|AU-----| c----|cacu gg-------- 2761 ----(-gaga a--------- )--------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---------- ---------- 2881 --|------- cc--a-g--- g|-------- --|-uccaca g--------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- -|-c-aguaa c--|ggggu- ga--(--u-- 3121 -gc------- ---------- ---------- ---------- ---------- ---------- 3181 ---------- ---------- -----)--uc g-cccc|--- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ---------- ---------- ---------- ---------- ---------- ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- --|-agagg- a--|------ ---------- ------cugu 4021 gga|------ --------|a ggcg-acagc a--------- ---------- ---------( 4081 agcacagcca gcaggcaggc g--------- ---------- ---------- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- --------|- ----uguugu c-gucg|--- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------| ----ggu-ag ca-------| -----AU|G- -||gcc-agc agccgc| // LOCUS Por.te.1.1 4557 bp RNA RNA 11-MAR-1997 DEFINITION Porphyra tenera. str. T-1. ACCESSION No information KEYWORDS No information. SOURCE Porphyra tenera. str. T-1. ORGANISM Porphyra tenera. REFERENCE 1 (bases 1 to 3004) AUTHORS Yamazaki,S., Katsura,H., Miyata,T., Jong-Ahm,S. and Saga,N. TITLE The taxonomic position based on the 18S rDNA in Porphyra tenera (Bangiales, Rhodophyra) JOURNAL Unpublished (1997) STANDARD No information COMMENTS Sequence information (bases 1 to 4557) Corresponding GenBank entry: D86237 LOCUS D86237 2339 bp DNA PLN 11-MAR-1997 DEFINITION Red algae DNA for 18S rRNA. ACCESSION D86237 NID g1881402 KEYWORDS 18S rDNA. SOURCE Porphyra tenera (strain:T-1) DNA. ORGANISM Porphyra tenera Eukaryotae; mitochondrial eukaryotes; Rhodophyta; Bangiophyceae; Bangiales; Bangiaceae; Porphyra. REFERENCE 1 (sites) AUTHORS Yamazaki,S., Katsura,H., Miyata,T., Jong-Ahm,S. and Saga,N. TITLE The taxonomic position based on the 18S rDNA in Porphyra tenera (Bangiales, Rhodophyra) JOURNAL Unpublished (1997) REFERENCE 2 (bases 1 to 2339) AUTHORS Saga,N. TITLE Direct Submission JOURNAL Submitted (26-JUN-1996) to the DDBJ/EMBL/GenBank databases. Naotsune Saga, Tokai University, Graduate School of Marine Science and Technology; 3-20-1 Orido, Shimizu, Shizuoka 424, Japan (E-mail:nsaga@scc.u-tokai.ac.jp, Tel:0543-34-0411, Fax:0543-34-9834) FEATURES Location/Qualifiers source 1..2339 /organism="Porphyra tenera" /strain="T-1" /db_xref="taxon:2785" rRNA 1..2339 /product="18S rRNA" BASE COUNT 601 a 518 c 649 g 571 t BASE COUNT 146 a 137 c 164 g 91 t 4019 others ORIGIN 1 |~~~caaguc uggU||g--- -------(-- --aacguau- ---gcau--- --ca------ 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 --aagcccuc c-guaauaaa aaaaaa--ca g--------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- ---------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 -------|-- ----c|Gcca ga--|----- ---------- -u-|guc--- ---------- 781 ---------- ---------- --------(u cucucu---g gaagcacacc ac-------- 841 --gcacgggg uucguuc-uc ucugcau--- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------gg c|--cgug-- -----|ugaa aaa-gcgagu ---------- ---------- 1021 --(------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 ---------- ---------- ---------- ---------- ---------- ---------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---aggcaaa cgaugggaaa cccggcuugg 1501 aauaguaacc agcc------ ---------- ---------- -)-------- --a-ca---- 1561 ---------- ---------- ---------- ---------- ---------- ---------- 1621 ----gagccc c-c--auca| --UA|CACU- U-C-U|AAAU |UGC-C-GGG |GAGU----| 1681 G-CC------ ---------- ---------- -|Cgc----- ---------- ---------- 1741 ---------- ---------- ---------- ---------- --------GA GG|------C 1801 CU-------- UG-AC|U-AC C|-------- ---------- ---------- ---------- 1861 ---|GCGGU- CC-------- ------(--- -------gcc (-gaga)ggu gagagcga(g 1921 caa)ucgcuc a)-------- --G-G-A-C- G-C|agca|G U-G-U-A-C- (guag-ug-- 1981 ---------- --------)- GU-A-C--A- U|-------G GA-U|GGU-A AAA-AC-GU- 2041 CA--A-GG-| -aua------ ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- g-GGU|-UGA -|UC-CGCA| GGG|-AAg-- 2221 |CGC------ ------(--- ---------- ---------- ---------- ---------- 2281 ---------- ----)|-|g| ag----|ggc caac------ ---------- ---------- 2341 (--cug-cc( uuug)ggcaa ca-------- ---------- ---------- ---------- 2401 -------)-- ---------- ---------- ---------- ---------- -------|-- 2461 ----guu-gg ca-|a|a|g- ---------- -GCG|--AA| CCU|--UCA| GA-GACU-C| 2521 -UAA|UGG-A --G-UG|G|G C--------- ---------- -(gcaa---- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------) ---------- 2701 ------GCU- |UAA-GG-GA |GA-GUC|C| A|AU-----| c----|cacu gg-------- 2761 ----(-gaaa a--------- )--------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---------- ---------- 2881 --|------- cc--a-g--- g|-------- --|-uccaca g--------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- -|-c-aguaa c--|ggggu- ga--(--u-- 3121 -gc------- ---------- ---------- ---------- ---------- ---------- 3181 ---------- ---------- -----)--uc g-cccc|--- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ---------- ---------- ---------- ---------- ---------- ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- --|-agagg- a--|------ ---------- ------cugu 4021 gga|------ --------|a ggca-ac--- -cac------ ---------- ---------( 4081 caaagcggu- ---------- ---------- ---------- ---------- ---------- 4141 -)-------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- --------|- --gug--ugu u-gucg|--- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------| ----ggua-g ca-------| -----AU|G- -||gcc-agc agccgc| // LOCUS Por.te.2.1 4557 bp RNA RNA 11-MAR-1997 DEFINITION Porphyra tenera. str. TU-3. ACCESSION No information KEYWORDS No information. SOURCE Porphyra tenera. str. TU-3. ORGANISM Porphyra tenera. REFERENCE 1 (bases 1 to 3004) AUTHORS Yamazaki,S., Katsura,H., Miyata,T., Jong-Ahm,S. and Saga,N. TITLE The taxonomic position based on the 18S rDNA in Porphyra tenera (Bangiales, Rhodophyra) JOURNAL Unpublished (1997) STANDARD No information COMMENTS Sequence information (bases 1 to 4557) Corresponding GenBank entry: D86236 LOCUS D86236 2340 bp DNA PLN 11-MAR-1997 DEFINITION Red algae DNA for 18S rRNA. ACCESSION D86236 NID g1881401 KEYWORDS 18S rDNA. SOURCE Porphyra tenera (strain:TU-3) DNA. ORGANISM Porphyra tenera Eukaryotae; mitochondrial eukaryotes; Rhodophyta; Bangiophyceae; Bangiales; Bangiaceae; Porphyra. REFERENCE 1 (sites) AUTHORS Yamazaki,S., Katsura,H., Miyata,T., Jong-Ahm,S. and Saga,N. TITLE The taxonomic position based on the 18S rDNA in Porphyra tenera (Bangiales, Rhodophyra) JOURNAL Unpublished (1997) REFERENCE 2 (bases 1 to 2340) AUTHORS Saga,N. TITLE Direct Submission JOURNAL Submitted (26-JUN-1996) to the DDBJ/EMBL/GenBank databases. Naotsune Saga, Tokai University, Graduate School of Marine Science and Technology; 3-20-1 Orido, Shimizu, Shizuoka 424, Japan (E-mail:nsaga@scc.u-tokai.ac.jp, Tel:0543-34-0411, Fax:0543-34-9834) FEATURES Location/Qualifiers source 1..2340 /organism="Porphyra tenera" /strain="TU-3" /db_xref="taxon:2785" rRNA 1..2340 /product="18S rRNA" BASE COUNT 601 a 521 c 649 g 569 t BASE COUNT 145 a 136 c 165 g 93 t 4018 others ORIGIN 1 |~~~caaguc uggU||g--- -------(-- --aacguau- ---gcau--- --ca------ 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 --aagcccuc c-guaauaaa aaaaaa--ca g--------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- ---------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 -------|-- ----c|Gcca ga--|----- ---------- -u-|guc--- ---------- 781 ---------- ---------- --------(u cucucu---g gaagcacacc ac-------- 841 --gcacgggg uucguuccuc ucugcau--- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------gg c|--cgug-- -----|ugaa aaaggcgagu ---------- ---------- 1021 --(------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 ---------- ---------- ---------- ---------- ---------- ---------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---aggcaaa cgaugggaaa cccgguuugg 1501 aauaguaacc aguc------ ---------- ---------- -)-------- --a-ca---- 1561 ---------- ---------- ---------- ---------- ---------- ---------- 1621 ----gagccc c-c--auca| --UA|CACU- U-C-U|AAAU |UGC-C-GGG |GAGU----| 1681 G-CC------ ---------- ---------- -|Cgc----- ---------- ---------- 1741 ---------- ---------- ---------- ---------- --------GA GG|------C 1801 CU-------- UG-AC|U-AC C|-------- ---------- ---------- ---------- 1861 ---|GCGGU- CC-------- ------(--- -------gcc (-gaga)ggu gagagcga(g 1921 caa)ucgcuc a)-------- --G-G-A-C- G-C|agca|G U-G-U-A-C- (guag-ug-- 1981 ---------- --------)- GU-A-C--A- U|-------G GA-U|GGU-A AAA-AC-GU- 2041 CA--A-GG-| -aua------ ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- g-GGU|-UGA -|UC-CGCA| GGG|-AAg-- 2221 |CGC------ ------(--- ---------- ---------- ---------- ---------- 2281 ---------- ----)|-|g| ag----|ggc caac------ ---------- ---------- 2341 (--cug-cc( uuug)ggcaa ca-------- ---------- ---------- ---------- 2401 -------)-- ---------- ---------- ---------- ---------- -------|-- 2461 ----guu-gg ca-|a|a|g- ---------- -GCG|--AA| CCU|--UCA| GA-GACU-C| 2521 -UAA|UGG-A --G-UG|G|G C--------- ---------- -(gcaa---- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------) ---------- 2701 ------GCU- |UAA-GG-GA |GA-GUC|C| A|AU-----| c----|cacu gg-------- 2761 ----(-gaaa ---------- )--------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---------- ---------- 2881 --|------- cc--a-g--- g|-------- --|-uccaca g--------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- -|-c-aguaa c--|ggggu- ga--(--u-- 3121 -gc------- ---------- ---------- ---------- ---------- ---------- 3181 ---------- ---------- -----)--uc g-cccc|--- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ---------- ---------- ---------- ---------- ---------- ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- --|-agagg- a--|------ ---------- ------cugu 4021 gga|------ --------|a ggca-ac--- -cac------ ---------- ---------( 4081 caaagcggu- ---------- ---------- ---------- ---------- ---------- 4141 -)-------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- --------|- --gug--ugu u-gucg|--- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------| ----ggua-g ca-------| -----AU|G- -||gcc-agc agccgc| // LOCUS Por.te.3.1 4557 bp RNA RNA 13-FEB-1997 DEFINITION Porphyra tenera strain T8. str. T8. ACCESSION No information KEYWORDS No information. SOURCE Porphyra tenera strain T8. str. T8. ORGANISM Porphyra tenera strain T8. REFERENCE 1 (bases 1 to 3004) AUTHORS Saga,N. TITLE Direct Submission JOURNAL Japan (E-mail:nsaga@scc.u-tokai.ac.jp, Tel:0543-34-0411, Fax : 0543-34-9834) Submitted (10-FEB-1997) to the DDBJ/EMBL/GenBank databases. Naotsune Saga, Tokai University, Graduate School of Marine Science and Technology; 3-20-1 Orido, Shimizu, Shizuoka 424, STANDARD No information COMMENTS Sequence information (bases 1 to 4557) Corresponding GenBank entry: AB000964 LOCUS AB000964 2302 bp DNA PLN 13-FEB-1997 DEFINITION Red algae 18S rRNA gene, partial sequence. ACCESSION AB000964 NID g1841309 KEYWORDS 18S rDNA. SOURCE Porphyra tenera (strain:T8) DNA. ORGANISM Porphyra tenera Eukaryotae; mitochondrial eukaryotes; Rhodophyta; Bangiophyceae; Bangiales; Bangiaceae; Porphyra. REFERENCE 1 (bases 1 to 2302) AUTHORS Saga,N. TITLE Direct Submission JOURNAL Submitted (10-FEB-1997) to the DDBJ/EMBL/GenBank databases. Naotsune Saga, Tokai University, Graduate School of Marine Science and Technology; 3-20-1 Orido, Shimizu, Shizuoka 424, Japan (E-mail:nsaga@scc.u-tokai.ac.jp, Tel:0543-34-0411, Fax:0543-34-9834) REFERENCE 2 (sites) AUTHORS Yamazaki,S., Katsura,H., Jong-Ahm,S. and Saga,N. TITLE The taxonomic position based on the 18S rDNA sequence JOURNAL Unpublished (1997) FEATURES Location/Qualifiers source 1..2302 /organism="Porphyra tenera" /strain="T8" rRNA 1..2302 /partial /standard_name="18S rRNA gene" misc_feature 551..1061 /note="intron-like structure" BASE COUNT 587 a 505 c 644 g 566 t BASE COUNT 139 a 132 c 170 g 93 t 4023 others ORIGIN 1 |gggcaaguc uggU||g--- -------(-- --aacguau- ---gcau--- --ca------ 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 --aagcccuc --gauaaaaa aaaa----ca g--------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- ---------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 -------|-- ----c|Gcca ga--|----- ---------- -u-|guc--- ---------- 781 ---------- ---------- --------(u cucucu---g gaagcgcacc au-------- 841 --gcau-ggc uuuguuccuc ucugcau--- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------gg c|--cgug-- -----|ugga a--ggcgagu ---------- ---------- 1021 --(------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 ---------- ---------- ---------- ---------- ---------- ---------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---aggcaaa cgaugggaaa ccaggcuugg 1501 aauaguaacc aacc------ ---------- ---------- -)-------- --a-ca---- 1561 ---------- ---------- ---------- ---------- ---------- ---------- 1621 ----gagccc c-c--auca| --UA|CACU- U-C-U|AAAU |UGC-C-GGG |GAGU----| 1681 G-CC------ ---------- ---------- -|Cgu----- ---------- ---------- 1741 ---------- ---------- ---------- ---------- --------GA GG|------C 1801 CU-------- UG-AC|U-AC C|-------- ---------- ---------- ---------- 1861 ---|GCGGU- CC-------- ------(--- -------gcc (-gaga)ggu gagagcga(g 1921 uaa)ucguuc a)-------- --G-G-A-C- G-C|agca|G U-G-U-A-C- (guag-ug-- 1981 ---------- --------)- GU-A-C--A- U|-------G GA-U|GGU-A AAA-AC-GU- 2041 CA--A-GG-| -aua------ ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- g-GGU|-UGA -|UC-CGCA| GGG|-AAg-- 2221 |CGC------ ------(--- ---------- ---------- ---------- ---------- 2281 ---------- ----)|-|g| ag----|ugc c--------- ---------- ---------- 2341 (g------cc ---------- (aucguc)-- --------gg ug-------- ---------- 2401 -------)-- ---------- ---------- ---------- ---------- -------|-- 2461 --------gg ca-|a|a|g- ---------- -GCG|--AA| CCU|--UCA| GA-GACU-C| 2521 -UAA|UGG-A --G-UG|G|G C--------- ---------- -(gcaa---- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------) ---------- 2701 ------GCU- |UAA-GG-GA |GA-GUC|C| A|AU-----| c----|cacu gg-------- 2761 ----(-gaaa ---------- )--------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---------- ---------- 2881 --|------- cc--a-g--- g|-------- --|-uccaca g--------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- -|-c-aguaa c--|ggggu- ga--(--u-- 3121 -gc------- ---------- ---------- ---------- ---------- ---------- 3181 ---------- ---------- -----)--uc g-cccc|--- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ---------- ---------- ---------- ---------- ---------- ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- --|-agagg- a--|------ ---------- ------cugu 4021 gga|------ --------|a ggca--c--- -cac------ ---------- ---------( 4081 caccc-(caa ga)-gggg-- ---------- ---------- ---------- ---------- 4141 -)-------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- --------|- --gugggugu u-gucg|--- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------| ----gguagc aa-------| -----AU|G- -||gcc-agc agccgc| // LOCUS Por.te.4.1 4557 bp RNA RNA 09-JUL-1998 DEFINITION Porphyra tenera. subsp. Porphyra tenera isolate Kawaura Kumamoto.. ACCESSION No information KEYWORDS No information. SOURCE Porphyra tenera. subsp. Porphyra tenera isolate Kawaura Kumamoto. ORGANISM Porphyra tenera. REFERENCE 1 (bases 1 to 3004) AUTHORS Kunimoto,M., Yamamoto,Y., Kaminishi,Y., Mizukami,Y. and Kito,H . TITLE A discrimination of Porphyra species (Rhodophyta) based on the sequences of small subunit ribosomal RNA gene JOURNAL Published Only in DataBase (1998) In press STANDARD No information COMMENTS Sequence information (bases 1 to 4557) Corresponding GenBank entry: AB013176 LOCUS AB013176 3589 bp DNA PLN 09-JUL-1998 DEFINITION Porphyra tenera gene for small subunit rRNA, isolate Kawaura Kumamoto. ACCESSION AB013176 NID g3298487 KEYWORDS small subunit ribosomal RNA; SSU rRNA. SOURCE Porphyra tenera gametophyte thallus DNA. ORGANISM Porphyra tenera Eukaryota; Rhodophyta; Bangiophyceae; Bangiales; Bangiaceae; Porphyra. REFERENCE 1 (bases 1 to 3589) AUTHORS Kunimoto,M., Yamamoto,Y., Kaminishi,Y., Mizukami,Y. and Kito,H. TITLE A discrimination of Porphyra species (Rhodophyta) based on the sequences of small subunit ribosomal RNA gene JOURNAL Published Only in DataBase (1998) In press REFERENCE 2 (bases 1 to 3589) AUTHORS Kunimoto,M., Yamamoto,Y., Kaminishi,Y., Mizukami,Y. and Kito,H. TITLE Direct Submission JOURNAL Submitted (21-APR-1998) to the DDBJ/EMBL/GenBank databases. Masahiko Kunimoto, National Fisheries University, Food Science; Nagatahon-machi 2-7-1, Shimonoseki, Yamaguchi 759-6595, Japan (E-mail:jkunimo@fish-u.ac.jp, Tel:0832-86-5111, Fax:0832-86-2292) FEATURES Location/Qualifiers source 1..3589 /organism="Porphyra tenera" /note="collection_site: Kawaura Kumamoto" /db_xref="taxon:2785" /dev_stage="gametophyte" /tissue_type="thallus" primer_bind 1..22 /note="PCR primer" precursor_RNA <1..>3589 /note="precursor of small subunit ribosomal RNA (SSU rRNA)" exon 23..568 /note="putative" /product="SSU rRNA" intron 569..1540 /note="putative" exon 1541..2776 /note="putative" /product="SSU rRNA" intron 2777..3559 /note="group I intron; putative" exon 3560..3589 /note="putative" /product="SSU rRNA" BASE COUNT 906 a 808 c 1019 g 856 t BASE COUNT 256 a 242 c 289 g 204 t 3566 others ORIGIN 1 |~~~caaguc uggU||g--- -------(-- --aaccuagu uccacccg-- cuccu----- 61 ---------c gug-----uu gaucgcacgc aggcgcacc- --------gu gugaagcauc 121 --aagcccuc --guuaaaau aaaa----ca g--------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- ---------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 -------|-- ----c|Gcca ga--|----- ---------- -u-|gucuc- ---------- 781 ---------- ---------- --------(g uccgga---a gg-agguccc uc-------- 841 --agguagag cacacaacaa aagcggccag ucaacucu-- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 -------ggg c|--gugug- -----|ugau gcugcggcug aa-------- ---------- 1021 --(gug---- ---------- ---------- ---------c acauagaucg gugcuugcau 1081 gcugugacaa aaaguggggu cgaggugcug aaauugucca gaacgaugug ucuccuacaa 1141 gaaacaccuc gcgauggacg cuacacgcac ggucaaagaa agcacuucua uguuuaucag 1201 gcgguggcuu augccagguu ugguagacag gaaaugcuua aagugaccac cucaaagauc 1261 ggcacagacc ugaccauauc gcaugugugu ggcacccauc acugccuagc agcgcaucac 1321 uuaauguuag aaccaaagca ugugaaugau gaucgcgugc acugccaugu uuuucucggg 1381 cgcguuucug acgcuucaga gaggcaugcg uuggcagagc gucauugccc acauuuaccg 1441 cggugcuauu cuguuugacu gcuaacggac aagaggcaaa agaugggaa- ucguuuauaa 1501 aaccau---- ---------- ---------- ---------- -)-------- -----u---- 1561 ---------- ---------- ---------- ---------- ---------- ---------- 1621 ----gagccc c-c--auca| --UA|CACU- U-C-U|AAAU |UGC-C-GGG |GAGU----| 1681 G-CC------ ---------- ---------- -|Cgc----- ---------- ---------- 1741 ---------- ---------- ---------- ---------- --------GA GG|------C 1801 CU-------- UG-AC|U-AC C|-------- ---------- ---------- ---------- 1861 ---|GCGGU- CC-------- ------(--- -------gcc (-gaga)ggu gagagcga(g 1921 caa)ucguuc a)-------- --G-G-A-C- G-C|agca|G U-G-U-A-C- (guag-ug-- 1981 ---------- --------)- GU-A-C--A- U|-------G GA-U|GGU-A AAA-AC-GU- 2041 CA--A-GG-| -aua------ ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- g-GGU|-UGA -|UC-CGCA| GGG|-AAg-- 2221 |CGC------ ------(--- ---------- ---------- ---------- ---------- 2281 ---------- ----)|-|g| ag----|ugc c--------- ---------- ---------- 2341 (g------cc ---------- (augguc)-- --------gg ug-------- ---------- 2401 -------)-- ---------- ---------- ---------- ---------- -------|-- 2461 --------gg ca-|a|a|g- ---------- -GCG|--AA| CCU|--UCA| GA-GACU-C| 2521 -UAA|UGG-A --G-UG|G|G C--------- ---------- -(gcaa---- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------) ---------- 2701 ------GCU- |UAA-GG-GA |GA-GUC|C| A|AU-----| c----|cacu gg-------- 2761 ----(-gaaa ---------- )--------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---------- ---------- 2881 --|------- cc--a-g--- g|-------- --|-uccaca g--------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- -|-c-aguaa c--|ggggu- ga--(--u-- 3121 -gc------- ---------- ---------- ---------- ---------- ---------- 3181 ---------- ---------- -----)--uc g-cccc|--- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ---------- ---------- ---------- ---------- ---------- ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- --|-agagg- a--|------ ---------- ------cugu 4021 gga|------ --------|a ggca-ac--- -cac------ ---------- ---------( 4081 ----c--aaa ag--ggu--- ---------- ---------- ---------- ---------- 4141 -)-------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- --------|- --gug--ugu u-gucg|--- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------| ----ggua-g aa-------| -----AU|G- -||gcc-agc agc~~~| // LOCUS Por.te.5.1 4557 bp RNA RNA 09-JUL-1998 DEFINITION Porphyra tenera.. ACCESSION No information KEYWORDS No information. SOURCE Porphyra tenera. ORGANISM Porphyra tenera. REFERENCE 1 (bases 1 to 3004) AUTHORS . Kunimoto,M., Yamamoto,Y., Kaminishi,Y., Mizukami,Y. and Kito,H TITLE the sequences of small subunit ribosomal RNA gene A discrimination of Porphyra species (Rhodophyta) based on JOURNAL Published Only in DataBase (1998) In press STANDARD No information COMMENTS Sequence information (bases 1 to 4557) Corresponding GenBank entry: AB013175 LOCUS AB013175 3766 bp DNA PLN 09-JUL-1998 DEFINITION Porphyra tenera gene for small subunit rRNA, isolate Shinwa Kumamoto. ACCESSION AB013175 NID g3298480 KEYWORDS small subunit ribosomal RNA; SSU rRNA. SOURCE Porphyra tenera gametophyte thallus DNA. ORGANISM Porphyra tenera Eukaryota; Rhodophyta; Bangiophyceae; Bangiales; Bangiaceae; Porphyra. REFERENCE 1 (bases 1 to 3766) AUTHORS Kunimoto,M., Yamamoto,Y., Kaminishi,Y., Mizukami,Y. and Kito,H. TITLE A discrimination of Porphyra species (Rhodophyta) based on the sequences of small subunit ribosomal RNA gene JOURNAL Published Only in DataBase (1998) In press REFERENCE 2 (bases 1 to 3766) AUTHORS Kunimoto,M., Yamamoto,Y., Kaminishi,Y., Mizukami,Y. and Kito,H. TITLE Direct Submission JOURNAL Submitted (21-APR-1998) to the DDBJ/EMBL/GenBank databases. Masahiko Kunimoto, National Fisheries University, Food Science; Nagatahon-machi 2-7-1, Shimonoseki, Yamaguchi 759-6595, Japan (E-mail:jkunimo@fish-u.ac.jp, Tel:0832-86-5111, Fax:0832-86-2292) FEATURES Location/Qualifiers source 1..3766 /organism="Porphyra tenera" /note="collection_site: Shinwa Kumamoto" /db_xref="taxon:2785" /dev_stage="gametophyte" /tissue_type="thallus" primer_bind 1..22 /note="PCR primer" precursor_RNA <1..>3766 /note="precursor of small subunit ribosomal RNA (SSU rRNA)" exon 23..568 /note="putative" /product="SSU rRNA" intron 569..1540 /note="putative" exon 1541..2776 /note="putative" /product="SSU rRNA" intron 2777..3736 /note="group I intron; putative" exon 3737..3766 /note="putative" /product="SSU rRNA" BASE COUNT 942 a 858 c 1067 g 899 t BASE COUNT 256 a 244 c 290 g 204 t 3563 others ORIGIN 1 |~~~caaguc uggU||g--- -------(-- --aaccuagu uccacccg-- cuccu----- 61 ---------c gug-----uu gaucgcacgc aggcgcacc- --------gu gugaagcauc 121 --aagcccuc --guuaaaau aaaa----ca g--------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- ---------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 -------|-- ----c|Gcca ga--|----- ---------- -u-|gucuc- ---------- 781 ---------- ---------- --------(g uccgga---a gg-agguccc uc-------- 841 --agguagag cacacaacaa aagcggccag ucaacucu-- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 -------ggg c|--gugug- -----|ugau gcugcggcug aa-------- ---------- 1021 --(gug---- ---------- ---------- ---------c acauagaucg gugcuugcau 1081 gcugugacaa aaaguggggu cgaggugcug aaauugucca gaacgaugug ucuccuacaa 1141 gaaacaccuc gcgauggacg cuacacgcac ggucaaagaa agcacuucua uguuuaucag 1201 gcgguggcuu augccagguu ugguagacag gaaaugcuua aagugaccac cucaaagauc 1261 ggcacagacc ugaccauauc gcaugugugu ggcacccauc acugccuagc agcgcaucac 1321 uuaauguuag aaccaaagca ugugaaugau gaucgcgugc acugccaugu uuuucucggg 1381 cgcguuucug acgcuucaga gaggcaugcg uuggcagagc gucauugccc acauuuaccg 1441 cggugcuauu cuguuugacu gcuaacggac aagaggcaaa agaugggaa- ucguuuauaa 1501 aaccau---- ---------- ---------- ---------- -)-------- -----u---- 1561 ---------- ---------- ---------- ---------- ---------- ---------- 1621 ----gagccc c-c--auca| --UA|CACU- U-C-U|AAAU |UGC-C-GGG |GAGU----| 1681 G-CC------ ---------- ---------- -|Cgc----- ---------- ---------- 1741 ---------- ---------- ---------- ---------- --------GA GG|------C 1801 CU-------- UG-AC|U-AC C|-------- ---------- ---------- ---------- 1861 ---|GCGGU- CC-------- ------(--- -------gcc (-gaga)ggu gagagcga(g 1921 caa)ucguuc a)-------- --G-G-A-C- G-C|agca|G U-G-U-A-C- (guag-ug-- 1981 ---------- --------)- GU-A-C--A- U|-------G GA-U|GGU-A AAA-AC-GU- 2041 CA--A-GG-| -aua------ ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- g-GGU|-UGA -|UC-CGCA| GGG|-AAg-- 2221 |CGC------ ------(--- ---------- ---------- ---------- ---------- 2281 ---------- ----)|-|g| ag----|ugc c--------- ---------- ---------- 2341 (g------cc ---------- (augguc)-- --------gg ug-------- ---------- 2401 -------)-- ---------- ---------- ---------- ---------- -------|-- 2461 --------gg ca-|a|a|g- ---------- -GCG|--AA| CCU|--UCA| GA-GACU-C| 2521 -UAA|UGG-A --G-UG|G|G C--------- ---------- -(gcaa---- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------) ---------- 2701 ------GCU- |UAA-GG-GA |GA-GUC|C| A|AU-----| c----|cacu gg-------- 2761 ----(-gaaa ---------- )--------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---------- ---------- 2881 --|------- cc--a-g--- g|-------- --|-uccaca g--------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- -|-c-aguaa c--|ggggu- ga--(--u-- 3121 -gc------- ---------- ---------- ---------- ---------- ---------- 3181 ---------- ---------- -----)--uc g-cccc|--- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ---------- ---------- ---------- ---------- ---------- ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- --|-agagg- a--|------ ---------- ------cugu 4021 gga|------ --------|a ggca-ac--- -cac------ ---------- ---------( 4081 ----c--aaa ag--ggu--- ---------- ---------- ---------- ---------- 4141 -)-------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- --------|- --gug--ugu u-gucg|--- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------| ----ggua-g aa-------| -----AU|G- -||gcc-agc agccgc| // LOCUS Por.te.6.1 4557 bp RNA RNA 16-JUL-1999 DEFINITION Porphyra tenera.. ACCESSION No information KEYWORDS No information. SOURCE Porphyra tenera. ORGANISM Porphyra tenera. REFERENCE 1 (bases 1 to 3004) AUTHORS Yoshida,T. Kunimoto,M., Kaminishi,Y., Mizukami,Y., Kito,H., Murase,N. and TITLE transcribed spacer 1 in Porphyra tenera (Rhodophyta) Molecular divergence of the ssu rRNA gene and internal JOURNAL Published Only in DataBase (1999) In press STANDARD No information COMMENTS Sequence information (bases 1 to 4557) Corresponding GenBank entry: AB029879 LOCUS AB029879 4168 bp DNA PLN 16-JUL-1999 DEFINITION Porphyra tenera DNA, 18S rRNA, ITS 1, 5.8S rRNA region, strain:Shinwa-2. ACCESSION AB029879 NID g5509934 VERSION AB029879.1 GI:5509934 KEYWORDS 18S rRNA; 18S ribosomal RNA; 5.8S rRNA; ssu rRNA; 5.8S ribosomal RNA. SOURCE Porphyra tenera (strain:Shinwa-2, isolate:Shinwa Kumamoto) gametophyte individual thallus DNA. ORGANISM Porphyra tenera Eukaryota; Rhodophyta; Bangiophyceae; Bangiales; Bangiaceae; Porphyra. REFERENCE 1 (bases 1 to 4168) AUTHORS Kunimoto,M., Kaminishi,Y., Mizukami,Y., Kito,H., Murase,N. and Yoshida,T. TITLE Molecular divergence of the ssu rRNA gene and internal transcribed spacer 1 in Porphyra tenera (Rhodophyta) JOURNAL Published Only in DataBase (1999) In press REFERENCE 2 (bases 1 to 4168) AUTHORS Kunimoto,M., Kaminishi,Y., Mizukami,Y., Kito,H., Murase,N. and Yoshida,T. TITLE Direct Submission JOURNAL Submitted (09-JUL-1999) to the DDBJ/EMBL/GenBank databases. Masahiko Kunimoto, National Fisheries University, Department of Food Science; Nagatahon-machi 2-7-1, Shimonoseki, Yamaguchi 759-6595, Japan (E-mail:jkunimo@fish-u.ac.jp, Tel:81-832-86-5111(ex.421), Fax:81-832-86-2292) FEATURES Location/Qualifiers source 1..4168 /organism="Porphyra tenera" /isolate="Shinwa Kumamoto" /strain="Shinwa-2" /db_xref="taxon:2785" /dev_stage="gametophyte" /tissue_type="individual thallus" primer_bind 1..22 exon 23..568 /note="putative" /product="ssu rRNA" rRNA join(23..568,1541..2776,3736..3765) /product="18S rRNA" intron 569..1540 /note="putative" exon 1541..2776 /note="putative" /product="ssu rRNA" intron 2777..3735 /note="group I intron;putative" exon 3736..3765 /note="putative" /product="ssu rRNA" misc_RNA 3766..4122 /note="ITS 1; putative" rRNA 4123..>4168 /note="putative" /product="5.8S rRNA" BASE COUNT 1039 a 965 c 1157 g 1007 t BASE COUNT 255 a 245 c 293 g 204 t 3560 others ORIGIN 1 |gggcaaguc uggU||g--- -------(-- --aaccuagu uccacccg-- cuccu----- 61 ---------c gug-----uu gaucgcacgc aggcgcacc- --------gu gugaagcauc 121 --aagcccuc --guuaaaau aaaa----ca g--------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- ---------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 -------|-- ----c|Gcca ga--|----- ---------- -u-|gucuc- ---------- 781 ---------- ---------- --------(g uccgga---a gg-agguccc uc-------- 841 --agguagag cacacaacaa aagcggccag ucaacucu-- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 -------ggg c|--gugug- -----|ugau gcugcggcug aa-------- ---------- 1021 --(gug---- ---------- ---------- ---------c acauagaucg gugcuugcau 1081 gcugugacaa aaaguggggu cgaggugcug aaauugucca gaacgaugug ucuccuacaa 1141 gaaacaccuc gcgauggacg cuacacgcac ggucaaagaa agcacuucua uguuuaucag 1201 gcgguggcuu augccagguu ugguagacag gaaaugcuua aagugaccac cucaaagauc 1261 ggcacagacc ugaccauauc gcaugugugu ggcacccauc acugccuagc agcgcaucac 1321 uuaauguuag aaccaaugca ugugaaugau gaucgcgugc acugccaugu uucucucggg 1381 cgcguuucug acgcuucaga gaggcaugcg uuggcagagc gucauugccc acauuuaccg 1441 cggugcuauu cuguuugacu gcuaacggac aagaggcaaa agaugggaa- ucguuuauaa 1501 aaccau---- ---------- ---------- ---------- -)-------- -----u---- 1561 ---------- ---------- ---------- ---------- ---------- ---------- 1621 ----gagccc c-c--auca| --UA|CACU- U-C-U|AAAU |UGC-C-GGG |GAGU----| 1681 G-CC------ ---------- ---------- -|Cgc----- ---------- ---------- 1741 ---------- ---------- ---------- ---------- --------GA GG|------C 1801 CU-------- UG-AC|U-AC C|-------- ---------- ---------- ---------- 1861 ---|GCGGU- CC-------- ------(--- -------gcc (-gaga)ggu gagagcga(g 1921 caa)ucguuc a)-------- --G-G-A-C- G-C|agca|G U-G-U-A-C- (guag-ug-- 1981 ---------- --------)- GU-A-C--A- U|-------G GA-U|GGU-A AAA-AC-GU- 2041 CA--A-GG-| -aua------ ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- g-GGU|-UGA -|UC-CGCA| GGG|-AAg-- 2221 |CGC------ ------(--- ---------- ---------- ---------- ---------- 2281 ---------- ----)|-|g| ag----|ugc c--------- ---------- ---------- 2341 (g------cc ---------- (augguc)-- --------gg ug-------- ---------- 2401 -------)-- ---------- ---------- ---------- ---------- -------|-- 2461 --------gg ca-|a|a|g- ---------- -GCG|--AA| CCU|--UCA| GA-GACU-C| 2521 -UAA|UGG-A --G-UG|G|G C--------- ---------- -(gcaa---- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------) ---------- 2701 ------GCU- |UAA-GG-GA |GA-GUC|C| A|AU-----| c----|cacu gg-------- 2761 ----(-gaaa ---------- )--------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---------- ---------- 2881 --|------- cc--a-g--- g|-------- --|-uccaca g--------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- -|-c-aguaa c--|ggggu- ga--(--u-- 3121 -gc------- ---------- ---------- ---------- ---------- ---------- 3181 ---------- ---------- -----)--uc g-cccc|--- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ---------- ---------- ---------- ---------- ---------- ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- --|-agagg- a--|------ ---------- ------cugu 4021 gga|------ --------|a ggca-acc-- -acc------ ---------- ---------( 4081 aaaag----- ---------- ---------- ---------- ---------- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- --------|- -ggugugugu u-gucg|--- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------| ----ggua-g aa-------| -----AU|G- -||gcc-agc agccgc| // LOCUS Por.te.7.1 4557 bp RNA RNA 16-JUL-1999 DEFINITION Porphyra tenera.. ACCESSION No information KEYWORDS No information. SOURCE Porphyra tenera. ORGANISM Porphyra tenera. REFERENCE 1 (bases 1 to 3004) AUTHORS Kunimoto,M., Kaminishi,Y., Mizukami,Y., Kito,H., Murase,N. and Yoshida,T. TITLE Molecular divergence of the ssu rRNA gene and internal transcribed spacer 1 in Porphyra tenera (Rhodophyta) JOURNAL Published Only in DataBase (1999) In press STANDARD No information COMMENTS Sequence information (bases 1 to 4557) Corresponding GenBank entry: AB029880 LOCUS AB029880 3994 bp DNA PLN 16-JUL-1999 DEFINITION Porphyra tenera DNA, 18S rRNA, ITS 1, 5.8S rRNA region, strain:Shinwa-3. ACCESSION AB029880 NID g5509935 VERSION AB029880.1 GI:5509935 KEYWORDS 18S rRNA; 18S ribosomal RNA; 5.8S rRNA; ssu rRNA; 5.8S ribosomal RNA. SOURCE Porphyra tenera (strain:Shinwa-3, isolate:Shinwa Kumamoto) gametophyte individual thallus DNA. ORGANISM Porphyra tenera Eukaryota; Rhodophyta; Bangiophyceae; Bangiales; Bangiaceae; Porphyra. REFERENCE 1 (bases 1 to 3994) AUTHORS Kunimoto,M., Kaminishi,Y., Mizukami,Y., Kito,H., Murase,N. and Yoshida,T. TITLE Molecular divergence of the ssu rRNA gene and internal transcribed spacer 1 in Porphyra tenera (Rhodophyta) JOURNAL Published Only in DataBase (1999) In press REFERENCE 2 (bases 1 to 3994) AUTHORS Kunimoto,M., Kaminishi,Y., Mizukami,Y., Kito,H., Murase,N. and Yoshida,T. TITLE Direct Submission JOURNAL Submitted (09-JUL-1999) to the DDBJ/EMBL/GenBank databases. Masahiko Kunimoto, National Fisheries University, Department of Food Science; Nagatahon-machi 2-7-1, Shimonoseki, Yamaguchi 759-6595, Japan (E-mail:jkunimo@fish-u.ac.jp, Tel:81-832-86-5111(ex.421), Fax:81-832-86-2292) FEATURES Location/Qualifiers source 1..3994 /organism="Porphyra tenera" /isolate="Shinwa Kumamoto" /strain="Shinwa-3" /db_xref="taxon:2785" /dev_stage="gametophyte" /tissue_type="individual thallus" primer_bind 1..22 /note="PCR primer" exon 23..568 /note="putative" /product="ssu rRNA" rRNA join(23..568,1541..2776,3560..3589) /product="18S rRNA" intron 569..1540 /note="putative" exon 1541..2776 /note="putative" /product="ssu rRNA" intron 2777..3559 /note="group I intron;putative" exon 3560..3589 /note="putative" /product="ssu rRNA" misc_RNA 3590..3948 /note="ITS 1; putative" rRNA 3949..>3994 /note="putative" /product="5.8S rRNA" BASE COUNT 1006 a 916 c 1107 g 965 t BASE COUNT 255 a 245 c 293 g 204 t 3560 others ORIGIN 1 |gggcaaguc uggU||g--- -------(-- --aaccuagu uccacccg-- cuccu----- 61 ---------c gug-----uu gaucgcacgc aggcgcacc- --------gu gugaagcauc 121 --aagcccuc --guuaaaau aaaa----ca g--------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- ---------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 -------|-- ----c|Gcca ga--|----- ---------- -u-|gucuc- ---------- 781 ---------- ---------- --------(g uccgga---a gg-agguccc uc-------- 841 --agguagag cacacaacaa aagcggccag ucaacucu-- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 -------ggg c|--gugug- -----|ugau gcugcggcug aa-------- ---------- 1021 --(gug---- ---------- ---------- ---------c acauagaucg gugcuugcau 1081 gcugugacaa aaaguggggu cgaggugcug aaauugucca gaacgaugug ucuccuacaa 1141 gaaacaccuc gcgauggacg cuacacgcac ggucaaagaa agcacuucua uguuuaucag 1201 gcgguggcuu augccagguu ugguagacag gaaaugcuua aagugaccac cucaaagauc 1261 ggcacagacc ugaccauauc gcaugugugu ggcacccauc acugccuagc agcgcaucac 1321 uuaauguuag aaccaaugca ugugaaugau gaucgcgugc acugccaugu uucucucggg 1381 cgcguuucug acgcuucaga gaggcaugcg uuggcagagc gucauugccc acauuuaccg 1441 cggugcuauu cuguuugacu gcuaacggac aagaggcaaa agaugggaa- ucguuuauaa 1501 aaccau---- ---------- ---------- ---------- -)-------- -----u---- 1561 ---------- ---------- ---------- ---------- ---------- ---------- 1621 ----gagccc c-c--auca| --UA|CACU- U-C-U|AAAU |UGC-C-GGG |GAGU----| 1681 G-CC------ ---------- ---------- -|Cgc----- ---------- ---------- 1741 ---------- ---------- ---------- ---------- --------GA GG|------C 1801 CU-------- UG-AC|U-AC C|-------- ---------- ---------- ---------- 1861 ---|GCGGU- CC-------- ------(--- -------gcc (-gaga)ggu gagagcga(g 1921 caa)ucguuc a)-------- --G-G-A-C- G-C|agca|G U-G-U-A-C- (guag-ug-- 1981 ---------- --------)- GU-A-C--A- U|-------G GA-U|GGU-A AAA-AC-GU- 2041 CA--A-GG-| -aua------ ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- g-GGU|-UGA -|UC-CGCA| GGG|-AAg-- 2221 |CGC------ ------(--- ---------- ---------- ---------- ---------- 2281 ---------- ----)|-|g| ag----|ugc c--------- ---------- ---------- 2341 (g------cc ---------- (augguc)-- --------gg ug-------- ---------- 2401 -------)-- ---------- ---------- ---------- ---------- -------|-- 2461 --------gg ca-|a|a|g- ---------- -GCG|--AA| CCU|--UCA| GA-GACU-C| 2521 -UAA|UGG-A --G-UG|G|G C--------- ---------- -(gcaa---- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------) ---------- 2701 ------GCU- |UAA-GG-GA |GA-GUC|C| A|AU-----| c----|cacu gg-------- 2761 ----(-gaaa ---------- )--------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---------- ---------- 2881 --|------- cc--a-g--- g|-------- --|-uccaca g--------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- -|-c-aguaa c--|ggggu- ga--(--u-- 3121 -gc------- ---------- ---------- ---------- ---------- ---------- 3181 ---------- ---------- -----)--uc g-cccc|--- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ---------- ---------- ---------- ---------- ---------- ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- --|-agagg- a--|------ ---------- ------cugu 4021 gga|------ --------|a ggca-acc-- -acc------ ---------- ---------( 4081 aaaag----- ---------- ---------- ---------- ---------- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- --------|- -ggugugugu u-gucg|--- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------| ----ggua-g aa-------| -----AU|G- -||gcc-agc agccgc| // LOCUS Por.te11.1 4557 bp RNA RNA 17-JUL-1999 DEFINITION Porphyra tenera.. ACCESSION No information KEYWORDS No information. SOURCE Porphyra tenera. ORGANISM Porphyra tenera. REFERENCE 1 (bases 1 to 3004) AUTHORS Kunimoto,M., Kaminishi,Y., Mizukami,Y., Kito,H., Murase,N. and Yashida,T. TITLE Molecular divergence of the ssu rRNA gene and internal transcribed spacer 1 in Porphyra tenera (Rhodophyta) JOURNAL Published Only in DataBase (1999) In press STANDARD No information COMMENTS Sequence information (bases 1 to 4557) Corresponding GenBank entry: AB029881 LOCUS AB029881 3994 bp DNA PLN 17-JUL-1999 DEFINITION Porphyra tenera DNA, 18S rRNA, ITS 1, 5.8S rRNA region, strain:Kawaura-4. ACCESSION AB029881 NID g5525093 VERSION AB029881.1 GI:5525093 KEYWORDS 18S rRNA; 18S ribosomal RNA; 5.8S rRNA; partial; ssu rRNA; 5.8S ribosomal RNA. SOURCE Porphyra tenera (strain:Kawaura-4, isolate:Shinwa Kumamoto) gametophyte individual thallus DNA. ORGANISM Porphyra tenera Eukaryota; Rhodophyta; Bangiophyceae; Bangiales; Bangiaceae; Porphyra. REFERENCE 1 (bases 1 to 3994) AUTHORS Kunimoto,M., Kaminishi,Y., Mizukami,Y., Kito,H., Murase,N. and Yashida,T. TITLE Molecular divergence of the ssu rRNA gene and internal transcrib ed spacer 1 in Porphyra tenera (Rhodophyta) JOURNAL Published Only in DataBase (1999) In press REFERENCE 2 (bases 1 to 3994) AUTHORS Kunimoto,M., Kaminishi,Y., Mizukami,Y., Kito,H., Murase,N. and Yashida,T. TITLE Direct Submission JOURNAL Submitted (09-JUL-1999) to the DDBJ/EMBL/GenBank databases. Masahiko Kunimoto, National Fisheries University, Department of Food Science; Nagatahon-machi 2-7-1, Shimonoseki, Yamaguchi 759-6595, Japan (E-mail:jkunimo@fish-u.ac.jp, Tel:81-832-86-5111(ex.421), Fax:81-832-86-2292) FEATURES Location/Qualifiers source 1..3994 /organism="Porphyra tenera" /isolate="Shinwa Kumamoto" /strain="Kawaura-4" /db_xref="taxon:2785" /dev_stage="gametophyte" /tissue_type="individual thallus" primer_bind 1..22 /note="PCR primer" exon 23..568 /note="putative" /product="ssu rRNA" rRNA join(23..568,1541..2776,3560..3589) /product="18S rRNA" intron 569..1540 /note="putative" exon 1541..2776 /note="putative" /product="ssu rRNA" intron 2777..3559 /note="group I intron;putative" exon 3560..3589 /note="putative" /product="ssu rRNA" misc_RNA 3590..3948 /note="ITS 1; putative" rRNA 3949..>3994 /note="putative" /product="5.8S rRNA" BASE COUNT 1007 a 915 c 1107 g 965 t BASE COUNT 256 a 244 c 293 g 204 t 3560 others ORIGIN 1 |gggcaaguc uggU||g--- -------(-- --aaccuagu uccacccg-- cuccu----- 61 ---------c gug-----uu gaucgcacgc aggcgcacc- --------gu gugaagcauc 121 --aagcccuc --guuaaaau aaaa----ca g--------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- ---------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 -------|-- ----c|Gcca ga--|----- ---------- -u-|gucuc- ---------- 781 ---------- ---------- --------(g uccgga---a gg-agguccc uc-------- 841 --agguagag cacacaacaa aagcggccag ucaacucu-- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 -------ggg c|--gugug- -----|ugau gcugcggcug aa-------- ---------- 1021 --(gug---- ---------- ---------- ---------c acauagaucg gugcuugcau 1081 gcugugacaa aaaguggggu cgaggugcug aaauugucca gaacgaugug ucuccuacaa 1141 gaaacaccuc gcgauggacg cuacacgcac ggucaaagaa agcacuucua uguuuaucag 1201 gcgguggcuu augccagguu ugguagacag gaaaugcuua aagugaccac cucaaagauc 1261 ggcacagacc ugaccauauc gcaugugugu ggcacccauc acugccuagc agcgcaucac 1321 uuaauguuag aaccaaagca ugugaaugau gaucgcgugc acugccaugu uuuucucggg 1381 cgcguuucug acgcuucaga gaggcaugcg uuggcagagc gucauugccc acauuuaccg 1441 cggugcuauu cuguuugacu gcuaacggac aagaggcaaa agaugggaa- ucguuuauaa 1501 aaccau---- ---------- ---------- ---------- -)-------- -----u---- 1561 ---------- ---------- ---------- ---------- ---------- ---------- 1621 ----gagccc c-c--auca| --UA|CACU- U-C-U|AAAU |UGC-C-GGG |GAGU----| 1681 G-CC------ ---------- ---------- -|Cgc----- ---------- ---------- 1741 ---------- ---------- ---------- ---------- --------GA GG|------C 1801 CU-------- UG-AC|U-AC C|-------- ---------- ---------- ---------- 1861 ---|GCGGU- CC-------- ------(--- -------gcc (-gaga)ggu gagagcga(g 1921 caa)ucguuc a)-------- --G-G-A-C- G-C|agca|G U-G-U-A-C- (guag-ug-- 1981 ---------- --------)- GU-A-C--A- U|-------G GA-U|GGU-A AAA-AC-GU- 2041 CA--A-GG-| -aua------ ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- g-GGU|-UGA -|UC-CGCA| GGG|-AAg-- 2221 |CGC------ ------(--- ---------- ---------- ---------- ---------- 2281 ---------- ----)|-|g| ag----|ugc c--------- ---------- ---------- 2341 (g------cc ---------- (augguc)-- --------gg ug-------- ---------- 2401 -------)-- ---------- ---------- ---------- ---------- -------|-- 2461 --------gg ca-|a|a|g- ---------- -GCG|--AA| CCU|--UCA| GA-GACU-C| 2521 -UAA|UGG-A --G-UG|G|G C--------- ---------- -(gcaa---- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------) ---------- 2701 ------GCU- |UAA-GG-GA |GA-GUC|C| A|AU-----| c----|cacu gg-------- 2761 ----(-gaaa ---------- )--------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---------- ---------- 2881 --|------- cc--a-g--- g|-------- --|-uccaca g--------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- -|-c-aguaa c--|ggggu- ga--(--u-- 3121 -gc------- ---------- ---------- ---------- ---------- ---------- 3181 ---------- ---------- -----)--uc g-cccc|--- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ---------- ---------- ---------- ---------- ---------- ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- --|-agagg- a--|------ ---------- ------cugu 4021 gga|------ --------|a ggca-ac--- -cac------ ---------- ---------( 4081 caaaagggu- ---------- ---------- ---------- ---------- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- --------|- --gug--ugu u-gucg|--- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------| ----ggua-g aa-------| -----AU|G- -||gcc-agc agccgc| // LOCUS Por.te10.1 4557 bp RNA RNA 16-JUL-1999 DEFINITION Porphyra tenera.. ACCESSION No information KEYWORDS No information. SOURCE Porphyra tenera. ORGANISM Porphyra tenera. REFERENCE 1 (bases 1 to 3004) AUTHORS Yoshida,T. Kunimoto,M., Kaminishi,Y., Mizukami,Y., Kito,H., Murase,N. and TITLE transcribed spacer 1 in Porphyra tenera (Rhodophyta) Molecular divergence of the ssu rRNA gene and internal JOURNAL Published Only in DataBase (1999) In press STANDARD No information COMMENTS Sequence information (bases 1 to 4557) Corresponding GenBank entry: AB029884 LOCUS AB029884 3381 bp DNA PLN 16-JUL-1999 DEFINITION Porphyra tenera DNA, 18S rRNA, ITS 1, 5.8S rRNA region, strain:Matsukawa-4. ACCESSION AB029884 NID g5509938 VERSION AB029884.1 GI:5509938 KEYWORDS 18S rRNA; 18S ribosomal RNA; 5.8S rRNA; ssu rRNA; 5.8S ribosomal RNA. SOURCE Porphyra tenera (strain:Matsukawa-4, isolate:Matsukawa Fukushima) gametophyte individual thallus DNA. ORGANISM Porphyra tenera Eukaryota; Rhodophyta; Bangiophyceae; Bangiales; Bangiaceae; Porphyra. REFERENCE 1 (bases 1 to 3381) AUTHORS Kunimoto,M., Kaminishi,Y., Mizukami,Y., Kito,H., Murase,N. and Yoshida,T. TITLE Molecular divergence of the ssu rRNA gene and internal transcribed spacer 1 in Porphyra tenera (Rhodophyta) JOURNAL Published Only in DataBase (1999) In press REFERENCE 2 (bases 1 to 3381) AUTHORS Kunimoto,M., Kaminishi,Y., Mizukami,Y., Kito,H., Murase,N. and Yoshida,T. TITLE Direct Submission JOURNAL Submitted (09-JUL-1999) to the DDBJ/EMBL/GenBank databases. Masahiko Kunimoto, National Fisheries University, Department of Food Science; Nagatahon-machi 2-7-1, Shimonoseki, Yamaguchi 759-6595, Japan (E-mail:jkunimo@fish-u.ac.jp, Tel:81-832-86-5111(ex.421), Fax:81-832-86-2292) FEATURES Location/Qualifiers source 1..3381 /organism="Porphyra tenera" /isolate="Matsukawa Fukushima" /strain="Matsukawa-4" /db_xref="taxon:2785" /dev_stage="gametophyte" /tissue_type="individual thallus" primer_bind 1..22 exon 23..568 /note="putative" /product="ssu rRNA" rRNA join(23..568,1078..2313,2956..2985) /product="18S rRNA" intron 569..1077 /note="putative" exon 1078..2313 /note="putative" /product="ssu rRNA" intron 2314..2955 /note="group I intron;putative" exon 2956..2985 /note="putative" /product="ssu rRNA" misc_RNA 2986..3342 /note="ITS 1; putative" rRNA 3343..>3381 /note="putative" /product="5.8S rRNA" BASE COUNT 850 a 768 c 941 g 822 t BASE COUNT 137 a 132 c 173 g 92 t 4023 others ORIGIN 1 |gggcaaguc uggU||g--- -------(-- --aaccua-- ---------- ---------- 61 ---------- ---------- --ugcuuca- ---------- ---------- ---------- 121 --aagcccuc --gauaaagg aaaa----ca g--------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- ---------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 -------|-- ----c|Gcca ga--|----- ---------- -u-|gucuc- ---------- 781 ---------- ---------- --------(u cucugg---- --aagcgcac caugcauggc 841 uuuguuccuc ucugcauggc cguguggaag gcgaguaggc agacgauggg aaaccaggcu 901 uggaauagua accaacc--- ---------- ---------- ---------- ---------- 961 ---------- ---------- ---------- ---------- ---------- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 ---------- ---------- ---------- ---------- ---------- ---------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- ---------- -)-------- --a-ca---- 1561 ---------- ---------- ---------- ---------- ---------- ---------- 1621 ----gagccc c-c--auca| --UA|CACU- U-C-U|AAAU |UGC-C-GGG |GAGU----| 1681 G-CC------ ---------- ---------- -|Cgc----- ---------- ---------- 1741 ---------- ---------- ---------- ---------- --------GA GG|------C 1801 AU-------- UG-AA|U-AC C|-------- ---------- ---------- ---------- 1861 ---|GCGGU- CC-------- ------(--- -------gcc (-gaga)ggu gagagcga(g 1921 caa)ucguuc a)-------- --G-G-A-C- G-C|agca|G U-G-U-A-C- (guag-ug-- 1981 ---------- --------)- GU-A-C--A- U|-------G GA-U|GGU-A AAA-AC-GU- 2041 CA--A-GG-| -aua------ ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- g-GGU|-UGA -|UC-CGCA| GGG|-AAg-- 2221 |CGC------ ------(--- ---------- ---------- ---------- ---------- 2281 ---------- ----)|-|g| ag----|ugc c--------- ---------- ---------- 2341 (g------cc ---------- (augguc)-- --------gg ug-------- ---------- 2401 -------)-- ---------- ---------- ---------- ---------- -------|-- 2461 --------gg ca-|a|a|g- ---------- -GCG|--AA| CCU|--UCA| GA-GACU-C| 2521 -UAA|UGG-A --G-UG|G|G C--------- ---------- -(gcaa---- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------) ---------- 2701 ------GCU- |UAA-GG-GA |GA-GUC|C| A|AU-----| c----|cacu gg-------- 2761 ----(-gaaa ---------- )--------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---------- ---------- 2881 --|------- cc--a-g--- g|-------- --|-uccaca g--------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- -|-c-aguaa c--|ggggu- ga--(--u-- 3121 -gc------- ---------- ---------- ---------- ---------- ---------- 3181 ---------- ---------- -----)--uc g-cccc|--- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ---------- ---------- ---------- ---------- ---------- ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- --|-agagg- a--|------ ---------- ------cugu 4021 gga|------ --------|a ggca-ccacc acccc----- ---------- ---------( 4081 aagag----- ---------- ---------- ---------- ---------- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- --------|g gggugggugu u-gucg|--- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------| ----gguagc aa-------| -----AU|G- -||gcc-agc agccgc| // LOCUS Por.te.9.1 4557 bp RNA RNA 16-JUL-1999 DEFINITION Porphyra tenera.. ACCESSION No information KEYWORDS No information. SOURCE Porphyra tenera. ORGANISM Porphyra tenera. REFERENCE 1 (bases 1 to 3004) AUTHORS Yoshida,T. Kunimoto,M., Kaminishi,Y., Mizukami,Y., Kito,H., Murase,N. and TITLE transcribed spacer 1 in Porphyra tenera (Rhodophyta) Molecular divergence of the ssu rRNA gene and internal JOURNAL Published Only in DataBase (1999) In press STANDARD No information COMMENTS Sequence information (bases 1 to 4557) Corresponding GenBank entry: AB029883 LOCUS AB029883 3381 bp DNA PLN 16-JUL-1999 DEFINITION Porphyra tenera DNA, 18S rRNA, ITS 1, 5.8S rRNA region, strain:Matsukawa-3. ACCESSION AB029883 NID g5509937 VERSION AB029883.1 GI:5509937 KEYWORDS 18S rRNA; 18S ribosomal RNA; 5.8S rRNA; ssu rRNA; 5.8S ribosomal RNA. SOURCE Porphyra tenera (strain:Matsukawa-3, isolate:Matsukawa Fukushima) gametophyte individual thallus DNA. ORGANISM Porphyra tenera Eukaryota; Rhodophyta; Bangiophyceae; Bangiales; Bangiaceae; Porphyra. REFERENCE 1 (bases 1 to 3381) AUTHORS Kunimoto,M., Kaminishi,Y., Mizukami,Y., Kito,H., Murase,N. and Yoshida,T. TITLE Molecular divergence of the ssu rRNA gene and internal transcribed spacer 1 in Porphyra tenera (Rhodophyta) JOURNAL Published Only in DataBase (1999) In press REFERENCE 2 (bases 1 to 3381) AUTHORS Kunimoto,M., Kaminishi,Y., Mizukami,Y., Kito,H., Murase,N. and Yoshida,T. TITLE Direct Submission JOURNAL Submitted (09-JUL-1999) to the DDBJ/EMBL/GenBank databases. Masahiko Kunimoto, National Fisheries University, Department of Food Science; Nagatahon-machi 2-7-1, Shimonoseki, Yamaguchi 759-6595, Japan (E-mail:jkunimo@fish-u.ac.jp, Tel:81-832-86-5111(ex.421), Fax:81-832-86-2292) FEATURES Location/Qualifiers source 1..3381 /organism="Porphyra tenera" /isolate="Matsukawa Fukushima" /strain="Matsukawa-3" /db_xref="taxon:2785" /dev_stage="gametophyte" /tissue_type="individual thallus" primer_bind 1..22 exon 23..568 /note="putative" /product="ssu rRNA" rRNA join(23..568,1078..2313,2956..2985) /product="18S rRNA" intron 569..1077 /note="putative" exon 1078..2313 /note="putative" /product="ssu rRNA" intron 2314..2955 /note="group I intron;putative" exon 2956..2985 /note="putative" /product="ssu rRNA" misc_RNA 2986..3342 /note="ITS 1; putative" rRNA 3343..>3381 /note="putative" /product="5.8S rRNA" BASE COUNT 850 a 768 c 941 g 822 t BASE COUNT 137 a 132 c 173 g 92 t 4023 others ORIGIN 1 |gggcaaguc uggU||g--- -------(-- --aaccua-- ---------- ---------- 61 ---------- ---------- --ugcuuca- ---------- ---------- ---------- 121 --aagcccuc --gauaaagg aaaa----ca g--------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- ---------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 -------|-- ----c|Gcca ga--|----- ---------- -u-|gucuc- ---------- 781 ---------- ---------- --------(u cucugg---- --aagcgcac caugcauggc 841 uuuguuccuc ucugcauggc cguguggaag gcgaguaggc agacgauggg aaaccaggcu 901 uggaauagua accaacc--- ---------- ---------- ---------- ---------- 961 ---------- ---------- ---------- ---------- ---------- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 ---------- ---------- ---------- ---------- ---------- ---------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- ---------- -)-------- --a-ca---- 1561 ---------- ---------- ---------- ---------- ---------- ---------- 1621 ----gagccc c-c--auca| --UA|CACU- U-C-U|AAAU |UGC-C-GGG |GAGU----| 1681 G-CC------ ---------- ---------- -|Cgc----- ---------- ---------- 1741 ---------- ---------- ---------- ---------- --------GA GG|------C 1801 AU-------- UG-AA|U-AC C|-------- ---------- ---------- ---------- 1861 ---|GCGGU- CC-------- ------(--- -------gcc (-gaga)ggu gagagcga(g 1921 caa)ucguuc a)-------- --G-G-A-C- G-C|agca|G U-G-U-A-C- (guag-ug-- 1981 ---------- --------)- GU-A-C--A- U|-------G GA-U|GGU-A AAA-AC-GU- 2041 CA--A-GG-| -aua------ ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- g-GGU|-UGA -|UC-CGCA| GGG|-AAg-- 2221 |CGC------ ------(--- ---------- ---------- ---------- ---------- 2281 ---------- ----)|-|g| ag----|ugc c--------- ---------- ---------- 2341 (g------cc ---------- (augguc)-- --------gg ug-------- ---------- 2401 -------)-- ---------- ---------- ---------- ---------- -------|-- 2461 --------gg ca-|a|a|g- ---------- -GCG|--AA| CCU|--UCA| GA-GACU-C| 2521 -UAA|UGG-A --G-UG|G|G C--------- ---------- -(gcaa---- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------) ---------- 2701 ------GCU- |UAA-GG-GA |GA-GUC|C| A|AU-----| c----|cacu gg-------- 2761 ----(-gaaa ---------- )--------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---------- ---------- 2881 --|------- cc--a-g--- g|-------- --|-uccaca g--------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- -|-c-aguaa c--|ggggu- ga--(--u-- 3121 -gc------- ---------- ---------- ---------- ---------- ---------- 3181 ---------- ---------- -----)--uc g-cccc|--- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ---------- ---------- ---------- ---------- ---------- ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- --|-agagg- a--|------ ---------- ------cugu 4021 gga|------ --------|a ggca-ccacc acccc----- ---------- ---------( 4081 aagag----- ---------- ---------- ---------- ---------- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- --------|g gggugggugu u-gucg|--- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------| ----gguagc aa-------| -----AU|G- -||gcc-agc agccgc| // LOCUS Por.y.1.1 4557 bp RNA RNA 19-DEC-1995 DEFINITION Porphyra yezoensis.; . ACCESSION D79976 KEYWORDS . SOURCE Porphyra yezoensis. ORGANISM Porphyra yezoensis. REFERENCE 1 (bases 1 to 2340) AUTHORS Yamazaki,S., Kitade,Y., Maruyama,T. and Saga,N. TITLE Phylogenetic position of Porphyra yezoensis (Bangiales, Rhodophyta) based on the 18S rDNA JOURNAL J. Mar. Biotechnol. (1996) In press STANDARD No information COMMENTS Sequence information (bases 1 to 4557) Corresponding GenBank entry: D79976 Submitted (12-Dec-1995) to DDBJ by: Naotsune Saga Dept. of Marine Science Tokai University Orido 3-20-1 Shimizu, Shizuoka 424 Japan Phone: 0543-34-0411 E-mail: nsaga@simizugw.cc.u-tokai.ac.jp Fax: 0543-34-9834. NCBI gi: 1125635 BASE COUNT 145 a 137 c 169 g 91 t 4015 others ORIGIN 1 |gggcaaguc uggU||g--- -------(-- --aacguau- ---gcau--- --ca------ 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 --aagcccuc c-guaauaaa aaaaaa--ca g--------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- ---------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 -------|-- ----c|Gcca ga--|----- ---------- -u-|guc--- ---------- 781 ---------- ---------- --------(u cucucu---g gaagcacacc ac-------- 841 --gcacgggg uucguuccuc ucugcau--- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------gg c|--cgug-- -----|ugaa aaaggcgagu ---------- ---------- 1021 --(------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 ---------- ---------- ---------- ---------- ---------- ---------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---aggcaaa cgaugggaaa cccggcuugg 1501 aauaguaacc agcc------ ---------- ---------- -)-------- --a-ca---- 1561 ---------- ---------- ---------- ---------- ---------- ---------- 1621 ----gaggcc c-c--auca| --UA|CACU- U-C-U|AAAU |UGC-C-GGG |GAGU----| 1681 G-CC------ ---------- ---------- -|Cgc----- ---------- ---------- 1741 ---------- ---------- ---------- ---------- --------GA GG|------C 1801 CU-------- UG-AC|U-AC C|-------- ---------- ---------- ---------- 1861 ---|GCGGU- CC-------- ------(--- -------gcc (-gaga)ggu gagagcga(g 1921 caa)ucgcuc a)-------- --G-G-A-C- G-C|agca|G U-G-U-A-C- (guag-ug-- 1981 ---------- --------)- GU-A-C--A- U|-------G GA-U|GGU-A AAA-AC-GU- 2041 CA--A-GG-| -aua------ ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- g-GGU|-UGA -|UC-CGCA| GGG|-AAg-- 2221 |CGC------ ------(--- ---------- ---------- ---------- ---------- 2281 ---------- ----)|-|g| ag----|ggc caac------ ---------- ---------- 2341 (--cug-cc( uuug)ggcaa ca-------- ---------- ---------- ---------- 2401 -------)-- ---------- ---------- ---------- ---------- -------|-- 2461 ----guu-gg ca-|a|a|g- ---------- -GCG|--AA| CCU|--UCA| GA-GACU-C| 2521 -UAA|UGG-A --G-UG|G|G C--------- ---------- -(gcaa---- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------) ---------- 2701 ------GCU- |UAA-GG-GA |GA-GUC|C| A|AU-----| c----|cacu gg-------- 2761 ----(-gaaa ---------- )--------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---------- ---------- 2881 --|------- cc--a-g--- g|-------- --|-uccaca g--------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- -|-c-aguaa c--|ggggu- ga--(--u-- 3121 -gc------- ---------- ---------- ---------- ---------- ---------- 3181 ---------- ---------- -----)--uc g-cccc|--- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ---------- ---------- ---------- ---------- ---------- ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- --|-agagg- a--|------ ---------- ------cugu 4021 gga|------ --------|a ggca-ac--- -cac------ ---------- ---------( 4081 caaagcggu- ---------- ---------- ---------- ---------- ---------- 4141 -)-------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- --------|- --gug--ugu u-gucg|--- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------| ----ggua-g ca-------| -----AU|G- -||gcc-agc agccgc| // LOCUS Por.y.2.1 4557 bp RNA RNA 09-JUL-1998 DEFINITION Porphyra yezoensis. subsp. Porphyra yezoensis isolate Hakodate Hokkaido.. ACCESSION No information KEYWORDS No information. SOURCE Porphyra yezoensis. subsp. Porphyra yezoensis isolate Hakodate Hokkaido. ORGANISM Porphyra yezoensis. REFERENCE 1 (bases 1 to 2340) AUTHORS . Kunimoto,M., Yamamoto,Y., Kaminishi,Y., Mizukami,Y. and Kito,H TITLE the sequences of small subunit ribosomal RNA gene A discrimination of Porphyra species (Rhodophyta) based on JOURNAL Published Only in DataBase (1998) In press STANDARD No information COMMENTS Organism information Culture collection: isolate Hakodate Hokkaido Sequence information (bases 1 to 4557) Corresponding GenBank entry: AB013177 LOCUS AB013177 2349 bp DNA PLN 09-JUL-1998 DEFINITION Porphyra yezoensis gene for small subunit rRNA, isolate Hakodate Hokkaido. ACCESSION AB013177 NID g3298488 KEYWORDS small subunit ribosomal RNA; SSU rRNA. SOURCE Porphyra yezoensis gametophyte thallus DNA. ORGANISM Porphyra yezoensis Eukaryota; Rhodophyta; Bangiophyceae; Bangiales; Bangiaceae; Porphyra. REFERENCE 1 (bases 1 to 2349) AUTHORS Kunimoto,M., Yamamoto,Y., Kaminishi,Y., Mizukami,Y. and Kito,H. TITLE A discrimination of Porphyra species (Rhodophyta) based on the sequences of small subunit ribosomal RNA gene JOURNAL Published Only in DataBase (1998) In press REFERENCE 2 (bases 1 to 2349) AUTHORS Kunimoto,M., Yamamoto,Y., Kaminishi,Y., Mizukami,Y. and Kito,H. TITLE Direct Submission JOURNAL Submitted (21-APR-1998) to the DDBJ/EMBL/GenBank databases. Masahiko Kunimoto, National Fisheries University, Food Science; Nagatahon-machi 2-7-1, Shimonoseki, Yamaguchi 759-6595, Japan (E-mail:jkunimo@fish-u.ac.jp, Tel:0832-86-5111, Fax:0832-86-2292) FEATURES Location/Qualifiers source 1..2349 /organism="Porphyra yezoensis" /note="collection_site: Hakodate Hokkaido" /db_xref="taxon:2788" /dev_stage="gametophyte" /tissue_type="thallus" primer_bind 1..22 precursor_RNA <1..>2349 /note="precursor of small subunit ribosomal RNA (SSU rRNA)" exon 23..566 /note="putative" /product="SSU rRNA" intron 567..1083 /note="putative" exon 1084..2349 /note="putative" /product="SSU rRNA" BASE COUNT 601 a 521 c 655 g 572 t BASE COUNT 145 a 137 c 168 g 92 t 4015 others ORIGIN 1 |gggcaaguc uggU||g--- -------(-- --aacguau- ---gcau--- --ca------ 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 --aagcccuc c-guaauaaa aaaaaa--ca g--------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- ---------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 -------|-- ----c|Gcca ga--|----- ---------- -u-|guc--- ---------- 781 ---------- ---------- --------(u cucucu---g gaagcacacc ac-------- 841 --gcacgggg uucguuccuc ucugcau--- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------gg c|--cgug-- -----|ugaa aaaggcgagu ---------- ---------- 1021 --(------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 ---------- ---------- ---------- ---------- ---------- ---------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---aggcaaa cgaugggaaa cccggcuugg 1501 aauaguaacc agcc------ ---------- ---------- -)-------- --a-ca---- 1561 ---------- ---------- ---------- ---------- ---------- ---------- 1621 ----gagccc c-c--auca| --UA|CACU- U-C-U|AAAU |UGC-C-GGG |GAGU----| 1681 G-CC------ ---------- ---------- -|Cgc----- ---------- ---------- 1741 ---------- ---------- ---------- ---------- --------GA GG|------C 1801 CU-------- UG-AC|U-AC C|-------- ---------- ---------- ---------- 1861 ---|GCGGU- CC-------- ------(--- -------gcc (-gaga)ggu gagagcga(g 1921 caa)ucgcuc a)-------- --G-G-A-C- G-C|agca|G U-G-U-A-C- (guag-ug-- 1981 ---------- --------)- GU-A-C--A- U|-------G GA-U|GGU-A AAA-AC-GU- 2041 CA--A-GG-| -aua------ ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- g-GGU|-UGA -|UC-CGCA| GGG|-AAg-- 2221 |CGC------ ------(--- ---------- ---------- ---------- ---------- 2281 ---------- ----)|-|g| ag----|ggc caac------ ---------- ---------- 2341 (--cug-cc( uuug)ggcaa ca-------- ---------- ---------- ---------- 2401 -------)-- ---------- ---------- ---------- ---------- -------|-- 2461 ----guu-gg ca-|a|a|g- ---------- -GCG|--AA| CCU|--UCA| GA-GACU-U| 2521 -UAA|UGG-A --G-UG|G|G C--------- ---------- -(gcaa---- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------) ---------- 2701 ------GCU- |UAA-GG-GA |GA-GUC|C| A|AU-----| c----|cacu gg-------- 2761 ----(-gaaa ---------- )--------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---------- ---------- 2881 --|------- cc--a-g--- g|-------- --|-uccaca g--------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- -|-c-aguaa c--|ggggu- ga--(--u-- 3121 -gc------- ---------- ---------- ---------- ---------- ---------- 3181 ---------- ---------- -----)--uc g-cccc|--- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ---------- ---------- ---------- ---------- ---------- ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- --|-agagg- a--|------ ---------- ------cugu 4021 gga|------ --------|a ggca-ac--- -cac------ ---------- ---------( 4081 caaagcggu- ---------- ---------- ---------- ---------- ---------- 4141 -)-------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- --------|- --gug--ugu u-gucg|--- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------| ----ggua-g ca-------| -----AU|G- -||gcc-agc agccgc| // LOCUS Por.y.3.1 4557 bp RNA RNA 17-JUL-1998 DEFINITION Porphyra yezoensis. subsp. Porphyra yezoensis isolate Ogatsu Miyagi.. ACCESSION No information KEYWORDS No information. SOURCE Porphyra yezoensis. subsp. Porphyra yezoensis isolate Ogatsu Miyagi. ORGANISM Porphyra yezoensis. REFERENCE 1 (bases 1 to 2340) AUTHORS . Kunimoto,M., Yamamoto,Y., Kaminishi,Y., Mizukami,Y. and Kito,H TITLE the sequences of small subunit ribosomal RNA gene A discrimination of Porphyra species (Rhodophyta) based on JOURNAL Published Only in DataBase (1998) In press STANDARD No information COMMENTS Organism information Culture collection: isolate Ogatsu Miyagi Sequence information (bases 1 to 4557) Corresponding GenBank entry: AB013178 LOCUS AB013178 2858 bp DNA PLN 17-JUL-1998 DEFINITION Porphyra yezoensis gene for small subunit rRNA, isolate Ogatsu Miyagi. ACCESSION AB013178 NID g3298489 KEYWORDS small subunit ribosomal RNA; SSU rRNA. SOURCE Porphyra yezoensis gametophyte thallus DNA. ORGANISM Porphyra yezoensis Eukaryota; Rhodophyta; Bangiophyceae; Bangiales; Bangiaceae; Porphyra. REFERENCE 1 (bases 1 to 2858) AUTHORS Kunimoto,M., Yamamoto,Y., Kaminishi,Y., Mizukami,Y. and Kito,H. TITLE A discrimination of Porphyra species (Rhodophyta) based on the sequences of small subunit ribosomal RNA gene JOURNAL Published Only in DataBase (1998) In press REFERENCE 2 (bases 1 to 2858) AUTHORS Kunimoto,M., Yamamoto,Y., Kaminishi,Y., Mizukami,Y. and Kito,H. TITLE Direct Submission JOURNAL Submitted (21-APR-1998) to the DDBJ/EMBL/GenBank databases. Masahiko Kunimoto, National Fisheries University, Food Science; Nagatahon-machi 2-7-1, Shimonoseki, Yamaguchi 759-6595, Japan (E-mail:jkunimo@fish-u.ac.jp, Tel:0832-86-5111, Fax:0832-86-2292) FEATURES Location/Qualifiers source 1..2858 /organism="Porphyra yezoensis" /note="collection_site: Ogatsu Miyagi" /db_xref="taxon:2788" /dev_stage="gametophyte" /tissue_type="thallus" primer_bind 1..22 /note="PCR primer" precursor_RNA <1..>2858 /note="precursor of small subunit ribosomal RNA (SSU rRNA)" exon 23..566 /note="putative" /product="SSU rRNA" intron 567..1083 /note="putative" exon 1084..2319 /note="putative" /product="SSU rRNA" intron 2320..2828 /note="group I intron; putative" exon 2829..2858 /note="putative" /product="SSU rRNA" BASE COUNT 729 a 638 c 812 g 679 t BASE COUNT 145 a 137 c 168 g 92 t 4015 others ORIGIN 1 |gggcaaguc uggU||g--- -------(-- --aacguau- ---gcau--- --ca------ 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 --aagcccuc c-guaauaaa aaaaaa--ca g--------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- ---------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 -------|-- ----c|Gcca ga--|----- ---------- -u-|guc--- ---------- 781 ---------- ---------- --------(u cucucu---g gaagcacacc ac-------- 841 --gcacgggg uucguuccuc ucugcau--- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------gg c|--cgug-- -----|ugaa aaaggcgagu ---------- ---------- 1021 --(------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 ---------- ---------- ---------- ---------- ---------- ---------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---aggcaaa cgaugggaaa cccggcuugg 1501 aauaguaacc agcc------ ---------- ---------- -)-------- --a-ca---- 1561 ---------- ---------- ---------- ---------- ---------- ---------- 1621 ----gagccc c-c--auca| --UA|CACU- U-C-U|AAAU |UGC-C-GGG |GAGU----| 1681 G-CC------ ---------- ---------- -|Cgc----- ---------- ---------- 1741 ---------- ---------- ---------- ---------- --------GA GG|------C 1801 CU-------- UG-AC|U-AC C|-------- ---------- ---------- ---------- 1861 ---|GCGGU- CC-------- ------(--- -------gcc (-gaga)ggu gagagcga(g 1921 caa)ucgcuc a)-------- --G-G-A-C- G-C|agca|G U-G-U-A-C- (guag-ug-- 1981 ---------- --------)- GU-A-C--A- U|-------G GA-U|GGU-A AAA-AC-GU- 2041 CA--A-GG-| -aua------ ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- g-GGU|-UGA -|UC-CGCA| GGG|-AAg-- 2221 |CGC------ ------(--- ---------- ---------- ---------- ---------- 2281 ---------- ----)|-|g| ag----|ggc caac------ ---------- ---------- 2341 (--cug-cc( uuug)ggcaa ca-------- ---------- ---------- ---------- 2401 -------)-- ---------- ---------- ---------- ---------- -------|-- 2461 ----guu-gg ca-|a|a|g- ---------- -GCG|--AA| CCU|--UCA| GA-GACU-U| 2521 -UAA|UGG-A --G-UG|G|G C--------- ---------- -(gcaa---- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------) ---------- 2701 ------GCU- |UAA-GG-GA |GA-GUC|C| A|AU-----| c----|cacu gg-------- 2761 ----(-gaaa ---------- )--------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---------- ---------- 2881 --|------- cc--a-g--- g|-------- --|-uccaca g--------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- -|-c-aguaa c--|ggggu- ga--(--u-- 3121 -gc------- ---------- ---------- ---------- ---------- ---------- 3181 ---------- ---------- -----)--uc g-cccc|--- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ---------- ---------- ---------- ---------- ---------- ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- --|-agagg- a--|------ ---------- ------cugu 4021 gga|------ --------|a ggca-ac--- -cac------ ---------- ---------( 4081 caaagcggu- ---------- ---------- ---------- ---------- ---------- 4141 -)-------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- --------|- --gug--ugu u-gucg|--- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------| ----ggua-g ca-------| -----AU|G- -||gcc-agc agccgc| // LOCUS Por.su.1.1 4557 bp RNA RNA 09-JUL-1998 DEFINITION Porphyra suborbiculata. subsp. Porphyra suborbiculata isolate Kawatana Yamaguchi.. ACCESSION No information KEYWORDS No information. SOURCE Porphyra suborbiculata. subsp. Porphyra suborbiculata isolate Kawatana Yamaguchi. ORGANISM Porphyra suborbiculata. REFERENCE 1 (bases 1 to 2340) AUTHORS . Kunimoto,M., Yamamoto,Y., Kaminishi,Y., Mizukami,Y. and Kito,H TITLE the sequences of small subunit ribosomal RNA gene A discrimination of Porphyra species (Rhodophyta) based on JOURNAL Published Only in DataBase (1998) In press STANDARD No information COMMENTS Sequence information (bases 1 to 4557) Corresponding GenBank entry: AB013180 LOCUS AB013180 2329 bp DNA PLN 09-JUL-1998 DEFINITION Porphyra suborbiculata gene for small subunit rRNA, isolate Kawatana Yamaguchi. ACCESSION AB013180 NID g3298491 KEYWORDS small subunit ribosomal RNA; SSU rRNA. SOURCE Porphyra suborbiculata gametophyte DNA. ORGANISM Porphyra suborbiculata Eukaryota; Rhodophyta; Bangiophyceae; Bangiales; Bangiaceae; Porphyra. REFERENCE 1 (bases 1 to 2329) AUTHORS Kunimoto,M., Yamamoto,Y., Kaminishi,Y., Mizukami,Y. and Kito,H. TITLE A discrimination of Porphyra species (Rhodophyta) based on the sequences of small subunit ribosomal RNA gene JOURNAL Published Only in DataBase (1998) In press REFERENCE 2 (bases 1 to 2329) AUTHORS Kunimoto,M., Yamamoto,Y., Kaminishi,Y., Mizukami,Y. and Kito,H. TITLE Direct Submission JOURNAL Submitted (21-APR-1998) to the DDBJ/EMBL/GenBank databases. Masahiko Kunimoto, National Fisheries University, Food Science; Nagatahon-machi 2-7-1, Shimonoseki, Yamaguchi 759-6595, Japan (E-mail:jkunimo@fish-u.ac.jp, Tel:0832-86-5111, Fax:0832-86-2292) FEATURES Location/Qualifiers source 1..2329 /organism="Porphyra suborbiculata" /note="collection_site: Kawatana Yamaguchi" /db_xref="taxon:76158" /dev_stage="gametophyte" primer_bind 1..22 /note="PCR primer" precursor_RNA <1..>2329 /note="precursor of small subunit ribosomal RNA (SSU rRNA)" exon 23..568 /note="putative" /product="SSU rRNA" intron 569..1062 /note="putative" exon 1063..2329 /note="putative" /product="SSU rRNA" BASE COUNT 593 a 505 c 658 g 573 t BASE COUNT 136 a 126 c 167 g 90 t 4038 others ORIGIN 1 |gggcaaguc uggU||g--- -------(-- --aacgcac- ---acac--- --guacaca- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 --aagcccgc --cugaaaaa aaaa----cg g--------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- ---------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 -------|-- ----c|Gcca ga--|----- ---------- -u-|guc--- ---------- 781 ---------- ---------- --------(u ucuccc---c c--------- ---------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------gg c|-------- -----|ugga cuaggaacag aa-c------ ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 ---------- ---------- ---------- ---------- ---------- ---------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- gggac-gggg agggggcaaa aggugggaaa ccgucugugu 1501 cucuuuucgu gaagagacg- ---------- ---------- -)-------- -----a---- 1561 ---------- ---------- ---------- ---------- ---------- ---------- 1621 ----gagccc c-c--acca| --UA|CACU- U-U-G|AAAU |UGU-C-GGG |GAGU----| 1681 G-CC------ ---------- ---------- -|Ugu----- ---------- ---------- 1741 ---------- ---------- ---------- ---------- --------UA GG|------C 1801 CUuu------ UG-AC|U-AC C|-------- ---------- ---------- ---------- 1861 ---|GCGGU- CC-------- ------(--- -------gcc (-gaga)ggu gagggcga(g 1921 caa)ucgccc a)-------- --G-G-A-C- G-C|agca|G U-G-C-A-U- (guaa-cg-- 1981 ---------- --------)- GU-G-C--A- U|-------G GA-A|GGU-A AAA-AC-GU- 2041 CAA-A-GG-| -aua------ ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- g-GGU|-UGA -|UC-CGCA| GGG|-AAg-- 2221 |CGC------ ------(--- ---------- ---------- ---------- ---------- 2281 ---------- ----)|-|g| ag----|ugc aguguuu--- ---------- ---------- 2341 (u-ugu-au- ---------- ---------- ---------- ---------- ---------- 2401 -------)-- ---------- ---------- ---------- ---------- -------|-- 2461 -ggacac-ug ca-|a|a|g- ---------- -GCG|--AA| CCU|--UCA| GA-GACU-C| 2521 -UAA|UAA-A --G-UG|G|G C--------- ---------- -(gcaa---- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------) ---------- 2701 ------GCU- |UAA-GG-GA |GA-GUC|C| A|AU-----| c----|cacu gg-------- 2761 ----(-gaaa ---------- )--------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---------- ---------- 2881 --|------- cc--a-g--- g|-------- --|-uccaca g--------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- -|-g-aguaa u--|gggguc ga--(--ug- 3121 -gc------- ---------- ---------- ---------- ---------- ---------- 3181 ---------- ---------- -----)--uc g-cccc|--- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ---------- ---------- ---------- ---------- ---------- ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- --|-agagg- a--|------ ---------- ------cugu 4021 gga|------ --------|a ggca-c---- -cac------ ---------- ---------( 4081 ccuccag--- ---------- ---------- ---------- ---------- ---------- 4141 -)-------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- --------|- --gug----a u-gucg|--- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------| ----gguuau gc-------| -----AU|G- -||gcc-agc agccgc| // LOCUS Por.su.2.1 4557 bp RNA RNA 10-DEC-1998 DEFINITION Porphyra suborbiculata.. ACCESSION No information KEYWORDS No information. SOURCE Porphyra suborbiculata. ORGANISM Porphyra suborbiculata. REFERENCE 1 (bases 1 to 2340) AUTHORS Yamazaki,S., Shimomura,K., Miyata,T. and Saga,N. TITLE Phylogeny of Porphyra (Bangiales, Rhodophyta) inferred from SSU rDNA and morphological data JOURNAL Unpublished (1999) STANDARD No information COMMENTS Sequence information (bases 1 to 4557) Corresponding GenBank entry: AB015796 LOCUS AB015796 2279 bp DNA PLN 10-DEC-1998 DEFINITION Porphyra suborbiculata gene for small subunit rRNA, partial sequence. ACCESSION AB015796 NID g3986218 KEYWORDS small subunit rRNA; small subunit ribosomal RNA. SOURCE Porphyra suborbiculata DNA. ORGANISM Porphyra suborbiculata Eukaryota; Rhodophyta; Bangiophyceae; Bangiales; Bangiaceae; Porphyra. REFERENCE 1 (sites) AUTHORS Yamazaki,S., Shimomura,K., Miyata,T. and Saga,N. TITLE Phylogeny of Porphyra (Bangiales, Rhodophyta) inferred from SSU rDNA and morphological data JOURNAL Unpublished (1999) REFERENCE 2 (bases 1 to 2279) AUTHORS Saga,N., Yamazaki,S. and Shimomura,K. TITLE Direct Submission JOURNAL Submitted (25-JUN-1998) to the DDBJ/EMBL/GenBank databases. Naotsune Saga, Tokai University, Center for Advanced Technology; 3-20-1, Orido, Shimizu, Shizuoka 424-8610, Japan (E-mail:nsaga@scc.u-tokai.ac.jp, Tel:+81-543-34-0411, Fax:+81-543-37-0947) FEATURES Location/Qualifiers source 1..2279 /organism="Porphyra suborbiculata" /db_xref="taxon:76158" rRNA join(<1..555,1046..>2279) /product="small subunit rRNA" primer_bind 1..22 intron 556..1045 /note="intron-like structure" primer_bind 2260..2279 BASE COUNT 582 a 494 c 643 g 560 t BASE COUNT 134 a 124 c 165 g 92 t 4042 others ORIGIN 1 |gggcaaguc uggU||g--- -------(-- --aacgcac- ---acac--- --auaua--- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 --cagcccgc --cugaaaaa aaaa----cg g--------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- ---------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 -------|-- ----c|Gcca ga--|----- ---------- -u-|guc--- ---------- 781 ---------- ---------- --------(u ucuccc---c c--------- ---------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------gg c|-------- -----|ugga cuaggaacag aa-c------ ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 ---------- ---------- ---------- ---------- ---------- ---------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- gggacggggg agggggcaaa aggugggaaa ccgucug--u 1501 cucuuuucgu gaagagacg- ---------- ---------- -)-------- -----a---- 1561 ---------- ---------- ---------- ---------- ---------- ---------- 1621 ----gagccc c-c--auca| --UA|C-CU- U-U-G|AAAU |UGU-C-GGG |GAGU----| 1681 G-CC------ ---------- ---------- -|ugu----- ---------- ---------- 1741 ---------- ---------- ---------- ---------- --------UA GG|------C 1801 CUuu------ UG-AC|U-AC C|-------- ---------- ---------- ---------- 1861 ---|GCGGU- CC-------- ------(--- -------gcc (-gaga)ggu gagggcga(g 1921 caa)ucgccc a)-------- --G-G-A-C- G-C|agca|G U-G-C-A-U- (guaa-cg-- 1981 ---------- --------)- GU-G-C--A- U|-------G GA-A|GGU-A AAA-AC-GU- 2041 CAA-A-GG-| -aua------ ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- g-GGU|-UGA -|UC-CGCA| GGG|-AAg-- 2221 |CGC------ ------(--- ---------- ---------- ---------- ---------- 2281 ---------- ----)|-|g| ag----|ugc aguguu---- ---------- ---------- 2341 (u-uug-uau u--------- ---------- ---------- ---------- ---------- 2401 -------)-- ---------- ---------- ---------- ---------- -------|-- 2461 --gacac-ug ca-|a|a|g- ---------- -GCG|--AA| CCU|--UCA| GA-GACU-C| 2521 -UAA|UAA-A --G-UG|G|G C--------- ---------- -(gcaa---- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------) ---------- 2701 ------GCU- |UAA-GG-GA |GA-GUC|C| A|AU-----| c----|cacu gg-------- 2761 ----(-gaaa ---------- )--------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---------- ---------- 2881 --|------- cc--a-g--- g|-------- --|-uccaca g--------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- -|-g-aguaa u--|gggguc ga--(--ug- 3121 -gc------- ---------- ---------- ---------- ---------- ---------- 3181 ---------- ---------- -----)--uc g-cccc|--- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ---------- ---------- ---------- ---------- ---------- ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- --|-agagg- a--|------ ---------- ------cugu 4021 gga|------ --------|a ggca-c---- -cac------ ---------- ---------( 4081 ccuccag--- ---------- ---------- ---------- ---------- ---------- 4141 -)-------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- --------|- --gug----a u-gucg|--- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------| ----gguuau gc-------| -----AU|G- -||gcc-agc agccgc| // LOCUS Por.c.1.1 4557 bp RNA RNA 25-APR-1999 DEFINITION Porphyra carolinensis.. ACCESSION No information KEYWORDS No information. SOURCE Porphyra carolinensis. ORGANISM Porphyra carolinensis. REFERENCE 1 (bases 1 to 2340) AUTHORS Klein,A.S., Taylor,H.A., West,A.L., Wallace,A.L., Teasdale,B., Cain,D.F., Neefus,C.D., Yarish,C. and Mathieson,A.C. TITLE Sequence variation in plastid-encoded rbcL and nuclear small subunit RNA genes applied to species identification for Porphyra of coastal New England JOURNAL Unpublished STANDARD No information COMMENTS Sequence information (bases 1 to 4557) Corresponding GenBank entry: AF133792 LOCUS AF133792 1547 bp DNA PLN 25-APR-1999 DEFINITION Porphyra carolinensis 18S ribosomal RNA, partial sequence. ACCESSION AF133792 NID g4680366 VERSION AF133792.1 GI:4680366 KEYWORDS . SOURCE Porphyra carolinensis. ORGANISM Porphyra carolinensis Eukaryota; Rhodophyta; Bangiophyceae; Bangiales; Bangiaceae; Porphyra. REFERENCE 1 (bases 1 to 1547) AUTHORS Klein,A.S., Taylor,H.A., West,A.L., Wallace,A.L., Teasdale,B., Cain,D.F., Neefus,C.D., Yarish,C. and Mathieson,A.C. TITLE Sequence variation in plastid-encoded rbcL and nuclear small subunit RNA genes applied to species identification for Porphyra of coastal New England JOURNAL Unpublished REFERENCE 2 (bases 1 to 1547) AUTHORS Wallace,A.L. TITLE Direct Submission JOURNAL Submitted (09-MAR-1999) Biochemistry and Molecular Biology, University of New Hampshire, Rudman Hall, Durham, NH 03824, USA FEATURES Location/Qualifiers source 1..1547 /organism="Porphyra carolinensis" /db_xref="taxon:31348" rRNA <1..>1547 /product="18S ribosomal RNA" BASE COUNT 369 a 439 c 334 g 405 t BASE COUNT 137 a 125 c 164 g 91 t 4040 others ORIGIN 1 |gggcaaguc uggU||g--- -------(-- --aac----- ---------- ---------- 61 ---------- ---------- ----gcacac acauacac-- ---------- ---a------ 121 --aagcccgc --cugaaaaa aaaa----cg g--------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- ---------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 -------|-- ----c|Gcca ga--|----- ---------- -u-|guc--- ---------- 781 ---------- ---------- --------(u ucuccc---c u--------- ---------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------gg c|-------- -----|ugga cuaggaacag aa-c------ ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 ---------- ---------- ---------- ---------- ---------- ---------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- gggac-gggg agggggcaaa aggugggaaa ccgucug--u 1501 cucuuuucgu gaagagacg- ---------- ---------- -)-------- -----a---- 1561 ---------- ---------- ---------- ---------- ---------- ---------- 1621 ----gagccc c-c--acca| --UA|CACU- U-U-G|AAAU |UGU-C-GGG |GAGU----| 1681 G-CC------ ---------- ---------- -|ugu----- ---------- ---------- 1741 ---------- ---------- ---------- ---------- --------UA GG|------C 1801 CUuu------ UG-AC|U-AC C|-------- ---------- ---------- ---------- 1861 ---|GCGGU- CC-------- ------(--- -------gcc (-gaga)ggu gagggcga(g 1921 caa)ucgccc a)-------- --G-G-A-C- G-C|agca|G U-G-C-A-U- (guaa-cg-- 1981 ---------- --------)- GU-G-C--A- U|-------G GA-A|GGU-A AAA-AC-GU- 2041 CAA-A-GG-| -aua------ ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- g-GGU|-UGA -|UC-CGCA| GGG|-AAg-- 2221 |CGC------ ------(--- ---------- ---------- ---------- ---------- 2281 ---------- ----)|-|g| ag----|ugc aguguu---- ---------- ---------- 2341 (u-uug-uau u--------- ---------- ---------- ---------- ---------- 2401 -------)-- ---------- ---------- ---------- ---------- -------|-- 2461 --gacac-ug ca-|a|a|g- ---------- -GCG|--AA| CCU|--UCA| GA-GACU-C| 2521 -UAA|UAA-A --G-UG|G|G C--------- ---------- -(gcaa---- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------) ---------- 2701 ------GCU- |UAA-GG-GA |GA-GUC|C| A|AU-----| c----|cacu gg-------- 2761 ----(-gaaa ---------- )--------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---------- ---------- 2881 --|------- cc--a-g--- g|-------- --|-uccaca g--------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- -|-g-aguaa u--|gggguc ga--(--ug- 3121 -gc------- ---------- ---------- ---------- ---------- ---------- 3181 ---------- ---------- -----)--uc g-cccc|--- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ---------- ---------- ---------- ---------- ---------- ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- --|-agagg- a--|------ ---------- ------cugu 4021 gga|------ --------|a ggca-c---- -cac------ ---------- ---------( 4081 ccuccag--- ---------- ---------- ---------- ---------- ---------- 4141 -)-------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- --------|- --gug----a u-gucg|--- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------| ----gguuau gc-------| -----AU|G- -||gcc-agc agccgc| // LOCUS Por.sp.2.1 4557 bp RNA RNA 09-JUL-1998 DEFINITION Porphyra sp. subsp. Porphyra sp. isolate Shimonoseki Yamaguchi.. ACCESSION No information KEYWORDS No information. SOURCE Porphyra sp. subsp. Porphyra sp. isolate Shimonoseki Yamaguchi. ORGANISM Porphyra sp. REFERENCE 1 (bases 1 to 2340) AUTHORS Kunimoto,M., Yamamoto,Y., Kaminishi,Y., Mizukami,Y. and Kito,H . TITLE A discrimination of Porphyra species (Rhodophyta) based on the sequences of small subunit ribosomal RNA gene JOURNAL Published Only in DataBase (1998) In press STANDARD No information COMMENTS Sequence information (bases 1 to 4557) Corresponding GenBank entry: AB013182 LOCUS AB013182 3048 bp DNA PLN 09-JUL-1998 DEFINITION Porphyra sp. gene for small subunit rRNA, isolate Shimonoseki Yamaguchi. ACCESSION AB013182 NID g3298493 KEYWORDS small subunit ribosomal RNA; SSU rRNA. SOURCE Porphyra sp. gametophyte thallus DNA. ORGANISM Porphyra sp. Eukaryota; Rhodophyta; Bangiophyceae; Bangiales; Bangiaceae; Porphyra. REFERENCE 1 (bases 1 to 3048) AUTHORS Kunimoto,M., Yamamoto,Y., Kaminishi,Y., Mizukami,Y. and Kito,H. TITLE A discrimination of Porphyra species (Rhodophyta) based on the sequences of small subunit ribosomal RNA gene JOURNAL Published Only in DataBase (1998) In press REFERENCE 2 (bases 1 to 3048) AUTHORS Kunimoto,M., Yamamoto,Y., Kaminishi,Y., Mizukami,Y. and Kito,H. TITLE Direct Submission JOURNAL Submitted (21-APR-1998) to the DDBJ/EMBL/GenBank databases. Masahiko Kunimoto, National Fisheries University, Food Science; Nagatahon-machi 2-7-1, Shimonoseki, Yamaguchi 759-6595, Japan (E-mail:jkunimo@fish-u.ac.jp, Tel:0832-86-5111, Fax:0832-86-2292) FEATURES Location/Qualifiers source 1..3048 /organism="Porphyra sp." /note="collection_site: Shimonoseki Yamaguchi" /db_xref="taxon:2790" /dev_stage="gametophyte" /tissue_type="thallus" primer_bind 1..22 /note="PCR primer" precursor_RNA <1..>3048 /note="precursor of small subunit ribosomal RNA (SSU rRNA)" exon 23..569 /note="putative" /product="SSU rRNA" intron 570..1128 /note="putative" exon 1129..2364 /note="putative" /product="SSU rRNA" intron 2365..3018 /note="group I intron; putative" exon 3019..3048 /note="putative" /product="SSU rRNA" BASE COUNT 780 a 678 c 859 g 731 t BASE COUNT 152 a 144 c 176 g 112 t 3973 others ORIGIN 1 |gggcaaguc uggU||g--- -------(-- --aacgcguc uagguacggc au-------- 61 ---------- ---ggguuuu ucuccccuuu ugcuacacc- acca------ ---------- 121 --ccgcccuc --guuaaaca aaaaa--uca ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- ---------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 -------|-- ----c|Gcca ga--|----- ---------- -u-|guc--- ---------- 781 ---------- ---------- --------(g gcacga---c cacaaguagg gg-------- 841 --g------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------gg c|--uc---- -----|ugcu gccccgcgug ug-cgug--- -----cac-- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 ---------- ---------- ---------- ---------- ---------- ---------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ----ggcaaa agauagggua u--------- 1501 ---------- ---------- ---------- ---------- -)-------- -----u---- 1561 ---------- ---------- ---------- ---------- ---------- ---------- 1621 ----gaguuc c-u--auca| --UA|CACU- U-C-G|AAAU |UGA-C-GGG |AAAG----| 1681 A-CC------ ---------- ---------- -|Uuguguga gugg(ca--- ------ugcg 1741 gaaggu-gcc )uugcu---- ---------- ---------- ---cag--aa ag|cacacuc 1801 uu-------- UG-GC|U-AC C|-------- ---------- ---------- ---------- 1861 ---|GCGGU- CC-------- ------(--- -------gcc (-gaga)ggu gagaacga(g 1921 caa)ucguuc a)-------- --G-G-A-C- G-C|agca|G U-G-C-A-U- (guaa-cg-- 1981 ---------- --------)- GU-G-U--A- C|-------G GA-U|GGU-A AAA-AC-GC- 2041 CA--A-AG-| -aagggaaa- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- g-GGU|-UAA -|UC-CGCA| GGG|-AAg-- 2221 |CGU------ ------(--- ---------- ---------- ---------- ---------- 2281 ---------- ----)|-|g| au----|ugg ca-------- ---------- ---------- 2341 (g-auc-uuc ucguaga--- ---------- ---------- ---------- ---------- 2401 -------)-- ---------- ---------- ---------- ---------- -------|-- 2461 ------u-gc ca-|a|a|g- ---------- -ACG|--AA| CCU|--UCA| GA-GACU-G| 2521 -UAA|UGA-A --G-UG|G|G C--------- ---------- -(gcaa---- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------) ---------- 2701 ------GCU- |UAA-GG-GA |CA-GUC|C| A|AU-----| c----|cacu gg-------- 2761 ----(-gaga ---------- )--------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---------- ---------- 2881 --|------- cc--a-g--- g|-------- --|-uccaca g--------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- -|-g-aguau c--|gggac- ag--(--a-- 3121 -ac------- ---------- ---------- ---------- ---------- ---------- 3181 ---------- ---------- -----)--uc a-accc|--- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ---------- ---------- ---------- ---------- ---------- ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- --|-guagg- a--|------ ---------- ------cugu 4021 gga|------ --------|g ggcg-u---- -ag------- ---------- ---------( 4081 caaagcguuc gca(cuug)u gcgaacgc-- ---------- ---------- ---------- 4141 -)-------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- --------|- --cu----ca c-gucg|--- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------| ----ggua-u ca-------| -----AU|G- -||gcc-agc agccgc| // LOCUS Por.l.2.1 4557 bp RNA RNA ~?~???? DEFINITION Porphyra leucosticta (Baltic). ACCESSION No information KEYWORDS No information. SOURCE Porphyra leucosticta (Baltic). ORGANISM Porphyra leucosticta (Baltic). REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 4557) Corresponding GenBank entry: AF342746 BASE COUNT 149 a 153 c 170 g 120 t 3965 others ORIGIN 1 |~~~caaguc uggU||g--- -------(-- --aaccaccg cacaagagga acaaaagccc 61 cucuugccu- ---------- ---------- ---------- ---------- -----gcacu 121 cacagcccuc --uuuaaaca aaaa---uca ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- ---------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 -------|-- ----c|Gcca ga--|----- ---------- -u-|guc--- ---------- 781 ---------- ---------- --------(g uugcca---g ggucuucuca gacuggacgg 841 gcucuugugc gggaccacug uccccauuca ccuaaaugcu acuca----- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------gu c--------- -----|ugau auggacgucg c--------- ---------- 1021 --(------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 ---------- ---------- ---------- ---------- ---------- ---------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- gcacggcaaa agaugggaua u--------- 1501 ---------- ---------- ---------- ---------- -)-------- -----u---- 1561 ---------- ---------- ---------- ---------- ---------- ---------- 1621 ----gagcuc c-c--auca| --UA|CACU- U-C-U|AAAU |UGU-C-GGG |AACG----| 1681 A-CC------ ---------- ---------- -|u-ggaagg gac(uugc-- ---------- 1741 ---------- -)guuc---- ---------- ---------- cuuccaa-AA GG|------C 1801 UU-------- UG-GU|U-AC C|-------- ---------- ---------- ---------- 1861 ---|GCGGU- CC-------- ------(--- -------gcc (-gaga)ggu gagagcga(g 1921 caa)ucguuc a)-------- --G-G-A-C- G-C|agca|G U-G-U-A-C- (auaa-cg-- 1981 ---------- --------)- GU-G-C--A- U|-------G GA-U|GGU-A AAA-AC-GC- 2041 CA--G-A--| -gua------ ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- g-GGU|-UAA -|UC-CGCA| GGG|-AAg-- 2221 |CGC------ ------(--- ---------- ---------- ---------- ---------- 2281 ---------- ----)|-|g| ag----|cau gug------- ---------- ---------- 2341 (g-gcg-ggg acaccugu(u uu)guuggug gcucugu--- ---------- ---------- 2401 -------)-- ---------- ---------- ---------- ---------- -------|-- 2461 -----ca-cg ug-|a|a|g- ---------- -GCG|--AA| CCU|--UCA| GA-GACU-G| 2521 -UAA|UGA-A --G-UG|G|G C--------- ---------- -(gcaa---- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------) ---------- 2701 ------GCU- |UAA-GG-GA |CA-GUC|C| A|AU-----| c----|cacg gg-------- 2761 ----(-gaga ---------- )--------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---------- ---------- 2881 --|------- cc--c-g--- g|-------- --|-uccaca g--------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- -|-g-cauag ---|agggg- ----(--uuu 3121 -gcuc----- ---------- ---------- ---------- ---------- ---------- 3181 ---------- ---------- -----)---- a-cccu|--- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ---------- ---------- ---------- ---------- ---------- ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- --|-ugagg- a--|------ ---------- ------cugu 4021 gga|------ --------|g agug-a---- ---------- ---------- ---------( 4081 cacaca---- ---------- ---------- ---------- ---------- ---------- 4141 -)-------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- --------|- ---------u c-acuc|--- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------| ----ggua-u ca-------| -----AU|G- -||gcc-agc agccgc| // LOCUS Por.ps.1.1 4557 bp RNA RNA 10-JUL-1998 DEFINITION Porphyra pseudolinearis. subsp. Porphyra pseudolinearis isolate Tohaku Tottori. str. misspelled pseudolinealis.. ACCESSION No information KEYWORDS No information. SOURCE Porphyra pseudolinearis. subsp. Porphyra pseudolinearis isolate Tohaku Tottori. str. misspelled pseudolinealis. ORGANISM Porphyra pseudolinearis. REFERENCE 1 (bases 1 to 2340) AUTHORS . Kunimoto,M., Yamamoto,Y., Kaminishi,Y., Mizukami,Y. and Kito,H TITLE the sequences of small subunit ribosomal RNA gene A discrimination of Porphyra species (Rhodophyta) based on JOURNAL Published Only in DataBase (1998) In press STANDARD No information COMMENTS Sequence information (bases 1 to 4557) Corresponding GenBank entry: AB013185 LOCUS AB013185 2983 bp DNA PLN 10-JUL-1998 DEFINITION Porphyra pseudolinealis gene for small subunit rRNA, isolate Tohaku Tottori. ACCESSION AB013185 NID g3298496 KEYWORDS small subunit ribosomal RNA; SSU rRNA. SOURCE Porphyra pseudolinealis gametophyte thallus DNA. ORGANISM Porphyra pseudolinealis Eukaryota; Rhodophyta; Bangiophyceae; Bangiales; Bangiaceae; Porphyra. REFERENCE 1 (bases 1 to 2983) AUTHORS Kunimoto,M., Yamamoto,Y., Kaminishi,Y., Mizukami,Y. and Kito,H. TITLE A discrimination of Porphyra species (Rhodophyta) based on the sequences of small subunit ribosomal RNA gene JOURNAL Published Only in DataBase (1998) In press REFERENCE 2 (bases 1 to 2983) AUTHORS Kunimoto,M., Yamamoto,Y., Kaminishi,Y., Mizukami,Y. and Kito,H. TITLE Direct Submission JOURNAL Submitted (21-APR-1998) to the DDBJ/EMBL/GenBank databases. Masahiko Kunimoto, National Fisheries University, Food Science; Nagatahon-machi 2-7-1, Shimonoseki, Yamaguchi 759-6595, Japan (E-mail:jkunimo@fish-u.ac.jp, Tel:0832-86-5111, Fax:0832-86-2292) FEATURES Location/Qualifiers source 1..2983 /organism="Porphyra pseudolinealis" /note="collection_site: Tohaku Tottori" /db_xref="taxon:76162" /dev_stage="gametophyte" /tissue_type="thallus" primer_bind 1..22 /note="PCR primer" precursor_RNA <1..>2983 /note="precursor of small subunit ribosomal RNA (SSU rRNA)" exon 23..568 /note="putative" /product="SSU rRNA" intron 569..1135 /note="putative" exon 1136..2372 /note="putative" /product="SSU rRNA" intron 2373..2953 /note="group I intron; putative" exon 2954..2983 /note="putative" /product="SSU rRNA" BASE COUNT 754 a 658 c 835 g 736 t BASE COUNT 156 a 140 c 167 g 129 t 3965 others ORIGIN 1 |gggcaaguc uggU||g--- -------(-- --aacucguc uugguucugc au-------- 61 ---------- ---------u uuucugucau ugcugca--- ---------- ---------- 121 --ccgcccuc --guuaaaua aaaa---uca ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- ---------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 -------|-- ----c|Gcca ga--|----- ---------- -u-|gucgg- ---------- 781 ---------- ---------- --------(c accagg---u ggggucucag au-------- 841 --gggguagg gcgcuccaua acaagaguaa ucagcccaug uuccuucaug cuucacaguc 901 ugagaacc-- ---------- ---------- ---------- ---------- ---------- 961 ------ccua c|--gugu-- -----|ug-- ---------- ---------- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 ---------- ---------- ---------- ---------- ---------- ---------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ----ggcaaa agauagggaa g--------- 1501 ---------- ---------- ---------- ---------- -)-------- -----u---- 1561 ---------- ---------- ---------- ---------- ---------- ---------- 1621 ----gaguuc c-u--auca| --UA|CACU- U-C-G|AAAU |UGU-C-GGG |AACG----| 1681 A-CC------ ---------- ---------- -|Uag----- ------a--- ------gaag 1741 cauggg-a-- ---------- ---------- ---------- --------AA AG|C----UU 1801 cucauaauuu UG-GC|U-AC C|-------- ---------- ---------- ---------- 1861 ---|GCGGU- CC-------- ------(--- -------gcc (-gaga)ggu gagagcga(g 1921 caa)ucguuc a)-------- --G-G-A-U- G-C|agca|G U-A-C-A-U- (guaa-cg-- 1981 ---------- --------)- AU-G-U--A- C|-------G GA-U|GGU-A AAA-AC-GC- 2041 CA--A-GA-| -gua------ ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- g-GGU|-UAA -|UC-CGCA| GGG|-AAg-- 2221 |CGU------ ------(--- ---------- ---------- ---------- ---------- 2281 ---------- ----)|-|g| au----|ugg caga------ ---------- ---------- 2341 (c-------- ---------- -uguuu---- ---------- ---------- ---------- 2401 -------)-- ---------- ---------- ---------- ---------- -------|-- 2461 ----ucu-gc ca-|a|a|g- ---------- -ACG|--AA| CCU|--UCA| GA-GACU-G| 2521 -UAA|UGA-A --G-UG|G|G C--------- ---------- -(gcaa---- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------) ---------- 2701 ------GCU- |UAA-GG-GA |CA-GUC|C| A|AU-----| c----|cacu gg-------- 2761 ----(-gaga ---------- )--------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---------- ---------- 2881 --|------- cc--a-g--- g|-------- --|-uccaca g--------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- -|-c-aguac c--|gggac- au--(--a-- 3121 -ac------- ---------- ---------- ---------- ---------- ---------- 3181 ---------- ---------- -----)--uc a-uccc|--- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ---------- ---------- ---------- ---------- ---------- ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- --|-guagg- a--|------ ---------- ------cugu 4021 gga|------ --------|g ggcg-u---- -cg------- ---------- ---------( 4081 gauagcguu( cucaucaa)g acgcau---- ---------- ---------- ---------- 4141 -)-------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- --------|- --------ca c-gucg|--- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------| ----ggua-u cc-------| -----AU|G- -||gcc-agc agccgc| // LOCUS Por.d.1.1 4557 bp RNA RNA 09-JUL-1998 DEFINITION Porphyra dentata. subsp. Porphyra dentata isolate Koga Fukuoka.. ACCESSION No information KEYWORDS No information. SOURCE Porphyra dentata. subsp. Porphyra dentata isolate Koga Fukuoka. ORGANISM Porphyra dentata. REFERENCE 1 (bases 1 to 2340) AUTHORS . Kunimoto,M., Yamamoto,Y., Kaminishi,Y., Mizukami,Y. and Kito,H TITLE the sequences of small subunit ribosomal RNA gene A discrimination of Porphyra species (Rhodophyta) based on JOURNAL Published Only in DataBase (1998) In press STANDARD No information COMMENTS Sequence information (bases 1 to 4557) Corresponding GenBank entry: AB013183 LOCUS AB013183 3037 bp DNA PLN 09-JUL-1998 DEFINITION Porphyra dentata gene for small subunit rRNA, isolate Koga Fukuoka. ACCESSION AB013183 NID g3298494 KEYWORDS small subunit ribosomal RNA; SSU rRNA. SOURCE Porphyra dentata gametophyte thallus DNA. ORGANISM Porphyra dentata Eukaryota; Rhodophyta; Bangiophyceae; Bangiales; Bangiaceae; Porphyra. REFERENCE 1 (bases 1 to 3037) AUTHORS Kunimoto,M., Yamamoto,Y., Kaminishi,Y., Mizukami,Y. and Kito,H. TITLE A discrimination of Porphyra species (Rhodophyta) based on the sequences of small subunit ribosomal RNA gene JOURNAL Published Only in DataBase (1998) In press REFERENCE 2 (bases 1 to 3037) AUTHORS Kunimoto,M., Yamamoto,Y., Kaminishi,Y., Mizukami,Y. and Kito,H. TITLE Direct Submission JOURNAL Submitted (21-APR-1998) to the DDBJ/EMBL/GenBank databases. Masahiko Kunimoto, National Fisheries University, Food Science; Nagatahon-machi 2-7-1, Shimonoseki, Yamaguchi 759-6595, Japan (E-mail:jkunimo@fish-u.ac.jp, Tel:0832-86-5111, Fax:0832-86-2292) FEATURES Location/Qualifiers source 1..3037 /organism="Porphyra dentata" /note="collection_site: Koga Fukuoka" /db_xref="taxon:76160" /dev_stage="gametophyte" /tissue_type="thallus" primer_bind 1..22 /note="PCR primer" precursor_RNA <1..>3037 /note="precursor of small subunit ribosomal RNA (SSU rRNA)" exon 23..568 /note="putative" /product="SSU rRNA" intron 569..1198 /note="putative" exon 1199..2435 /note="putative" /product="SSU rRNA" intron 2436..3007 /note="group I intron; putative" exon 3008..3037 /note="putative" /product="SSU rRNA" BASE COUNT 772 a 674 c 851 g 740 t BASE COUNT 163 a 165 c 202 g 125 t 3902 others ORIGIN 1 |gggcaaguc uggU||g--- -------(-- --aaccuagu uccacucg-- uuucuc-gcc 61 u--------c gug---cucu gaucgcaugc aggcgcacc- --------gc gugaagcauc 121 --aagcccuc --guuaaaau aaaa----ca g--------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- ---------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 -------|-- ----c|Gcca ga--|----- ---------- -u-|gucuc- ---------- 781 ---------- ---------- --------(u uccgga---a gc-agguccg gc-------- 841 --agguagag cacacaacaa gagcggccag cauacucugg gcguguccgc auuugccgcc 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 -------gug c|--uauucu guu--|ugac uu----gugg a--------- ---------- 1021 --(------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 ---------- ---------- ---------- ---------- ---------- ---------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- -----aggcu agcaggcaaa agaugggaa- ccguuuuucu 1501 uu-------- ---------- ---------- ---------- -)-------- -----u---- 1561 ---------- ---------- ---------- ---------- ---------- ---------- 1621 ----gagccc c-c--auca| --UA|CACU- U-C-U|AAAU |UGU-C-GGG |GAGU----| 1681 G-CC------ ---------- ---------- -|Cgu----- ---------- ---------- 1741 ---------- ---------- ---------- ---------- --------GA GG|------C 1801 CUu------- UG-AC|U-AC C|-------- ---------- ---------- ---------- 1861 ---|GCGGU- CC-------- ------(--- -------gcc (-gaga)ggu gagggcga(g 1921 caa)ucgcuc a)-------- --G-G-A-C- G-C|agca|G U-G-U-A-C- (guaa-cg-- 1981 ---------- --------)- GU-A-C--A- U|-------G GA-U|GGU-A AAA-AC-GU- 2041 CA--A-GG-| -aua------ ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- g-GGU|-UGA -|UC-CGCA| GGG|-AAg-- 2221 |CGC------ ------(--- ---------- ---------- ---------- ---------- 2281 ---------- ----)|-|g| aa----|ugc c--------- ---------- ---------- 2341 (g-ccc-acc ---------- -auguccguu gggcauuagg gggaggg--- ---------- 2401 -------)-- ---------- ---------- ---------- ---------- -------|-- 2461 --------gg ca-|a|a|g- ---------- -GCG|--AA| CCU|--UCA| GA-GACU-C| 2521 -UAA|UGG-A --G-UG|G|G C--------- ---------- -(gcaa---- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------) ---------- 2701 ------GCU- |UAA-GG-GA |GA-GUC|C| A|AU-----| c----|cacu gg-------- 2761 ----(-gaaa ---------- )--------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---------- ---------- 2881 --|------- cc--a-g--- g|-------- --|-uccaca g--------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- -|-u-aguaa c--|gggga- gu--(--u-- 3121 -gc------- ---------- ---------- ---------- ---------- ---------- 3181 ---------- ---------- -----)--uc g-cccc|--- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ---------- ---------- ---------- ---------- ---------- ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- --|-agagg- a--|------ ---------- ------cugu 4021 gga|------ --------|a ggcg-au--- -aa------- ---------- ---------( 4081 aaaaaaaaaa aaagggcacc uacgccaggg gucc------ ---------- ---------- 4141 -)-------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- --------|- ---uu---gu c-gucg|--- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------| ----ggua-a gc-------| -----AU|G- -||gcc-agc agccgc| // LOCUS Por.h.1.1 4557 bp RNA RNA 10-DEC-1998 DEFINITION Porphyra haitanensis.. ACCESSION No information KEYWORDS No information. SOURCE Porphyra haitanensis. ORGANISM Porphyra haitanensis. REFERENCE 1 (bases 1 to 2340) AUTHORS Yamazaki,S., Shimomura,K., Miyata,T. and Saga,N. TITLE SSU rDNA and morphological data Phylogeny of Porphyra (Bangiales, Rhodophyta) inferred from JOURNAL Unpublished (1999) STANDARD No information COMMENTS Sequence information (bases 1 to 4557) Corresponding GenBank entry: AB015795 LOCUS AB015795 2354 bp DNA PLN 10-DEC-1998 DEFINITION Porphyra haitanensis gene for small subunit rRNA, partial sequence. ACCESSION AB015795 NID g3986217 KEYWORDS small subunit rRNA; small subunit ribosomal RNA. SOURCE Porphyra haitanensis DNA. ORGANISM Porphyra haitanensis Eukaryota; Rhodophyta; Bangiophyceae; Bangiales; Bangiaceae; Porphyra. REFERENCE 1 (sites) AUTHORS Yamazaki,S., Shimomura,K., Miyata,T. and Saga,N. TITLE Phylogeny of Porphyra (Bangiales, Rhodophyta) inferred from SSU rDNA and morphological data JOURNAL Unpublished (1999) REFERENCE 2 (bases 1 to 2354) AUTHORS Saga,N., Yamazaki,S. and Shimomura,K. TITLE Direct Submission JOURNAL Submitted (25-JUN-1998) to the DDBJ/EMBL/GenBank databases. Naotsune Saga, Tokai University, Center for Advanced Technology; 3-20-1, Orido, Shimizu, Shizuoka 424-8610, Japan (E-mail:nsaga@scc.u-tokai.ac.jp, Tel:+81-543-34-0411, Fax:+81-543-37-0947) FEATURES Location/Qualifiers source 1..2354 /organism="Porphyra haitanensis" /db_xref="taxon:76159" rRNA join(<1..557,1120..>2354) /product="small subunit rRNA" primer_bind 1..22 intron 558..1119 /note="intron-like structure" primer_bind 2335..2354 BASE COUNT 591 a 518 c 659 g 586 t BASE COUNT 142 a 142 c 186 g 119 t 3968 others ORIGIN 1 |gggcaaguc uggU||g--- -------(-- --aaccuagu uccacucg-- uugcuc-gcc 61 u--------c gug---cugu gauugcauau gcacaggcgc acc-----gc gugaagcguc 121 --aagcccuc --guuaaaau aaaa----ca g--------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- ---------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 -------|-- ----c|Gcca ga--|----- ---------- -u-|gucucu ---------- 781 ---------- ---------- --------(u uccgga---a gc-------- ---------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 -------agg g|-------- -----|ugac uu----gugg a--------- ---------- 1021 --(------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 ---------- ---------- ---------- ---------- ---------- ---------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- -----aggca agcaggcaaa agaugggaa- ccuauuuucc 1501 guugggagaa ucaa------ ---------- ---------- -)-------- -----u---- 1561 ---------- ---------- ---------- ---------- ---------- ---------- 1621 ----gagccc c-c--auca| --UA|CACU- U-C-U|AAAU |UGU-C-GGG |GAGU----| 1681 G-CC------ ---------- ---------- -|Cgc----- ---------- ---------- 1741 ---------- ---------- ---------- ---------- --------CA GG|------C 1801 CUu------- UG-AC|U-AC C|-------- ---------- ---------- ---------- 1861 ---|GCGGU- CC-------- ------(--- -------gcc (-gaga)ggu gagagcga(g 1921 caa)ucguuc a)-------- --G-G-A-C- G-C|agca|G U-G-U-A-C- (guag-ug-- 1981 ---------- --------)- GU-A-C--A- U|-------G GA-U|GGU-A AAA-AC-GU- 2041 CA--A-GG-| -gua------ ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- g-GGU|-UGA -|UC-CGCA| GGG|-AAg-- 2221 |CGC------ ------(--- ---------- ---------- ---------- ---------- 2281 ---------- ----)|-|g| ag----|ugc ---------- ---------- ---------- 2341 (u-uuu-ucc augcggccuc c(uuuu)ggu ggccgcgugg cgagau---- ---------- 2401 -------)-- ---------- ---------- ---------- ---------- -------|-- 2461 ---------g ca-|a|a|g- ---------- -GCG|--AA| CCU|--UCA| GA-GACU-C| 2521 -UAA|UGG-A --G-UG|G|G C--------- ---------- -(gcaa---- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------) ---------- 2701 ------GCU- |UAA-GG-GA |GA-GUC|C| A|AU-----| c----|cacu gg-------- 2761 ----(-gaaa aaaa------ )--------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---------- ---------- 2881 --|------- cc--a-g--- g|-------- --|-uccaca g--------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- -|-g-aguaa c--|gggau- uu--(--u-- 3121 -gc------- ---------- ---------- ---------- ---------- ---------- 3181 ---------- ---------- -----)--uc g-cccc|--- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ---------- ---------- ---------- ---------- ---------- ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- --|-ggagg- a--|------ ---------- ------cugu 4021 gga|------ --------|a ggcg-ac--- -c-------- ---------- ---------( 4081 aagcgucuua agggcgca-- ---------- ---------- ---------- ---------- 4141 -)-------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- --------|- ----g--cgu u-gucg|--- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------| ----ggua-u ga-------| -----AU|G- -||gcc-agc agccgc| // LOCUS Por.o.1.1 4557 bp RNA RNA 10-DEC-1998 DEFINITION Porphyra onoi.. ACCESSION No information KEYWORDS No information. SOURCE Porphyra onoi. ORGANISM Porphyra onoi. REFERENCE 1 (sites) AUTHORS Yamazaki,S., Shimomura,K., Miyata,T. and Saga,N. TITLE Phylogeny of Porphyra (Bangiales, Rhodophyta) inferred from SSU rDNA and morphological data JOURNAL Unpublished (1999) STANDARD No information REFERENCE 2 (bases 1 to 2331) AUTHORS Saga,N., Yamazaki,S. and Shimomura,K. JOURNAL Submitted (25-JUN-1998) to the DDBJ/EMBL/GenBank databases. Naotsune Saga, Tokai University, Center for Advanced Technology; 3-20-1, Orido, Shimizu, Shizuoka 424-8610, Japan (E-mail:nsaga@scc. u-tokai.ac.jp, Tel: +81-543-34-0411, Fax:+81-543-37-0947) STANDARD No information COMMENTS Sequence information (bases 1 to 4557) Corresponding GenBank entry: AB015794 BASE COUNT 149 a 141 c 176 g 106 t 3985 others ORIGIN 1 |gggcaaguc uggU||g--- -------(-- --aaccuagu uccacccg-- cuccu----- 61 ---------c gug-----uu gaucgcacgc aggcgcacc- --------gu gugaagcauc 121 --aagcccuc --guuaaaau aaaa----ca g--------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- ---------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 -------|-- ----c|Gcca ga--|----- ---------- -u-|gucuc- ---------- 781 ---------- ---------- --------(g uccgga---a gg-agguccc uc-------- 841 --agguagag cacacaau-- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 ------gcug u|--ucuguu -----|ugac u-----gcua ac-------- ---------- 1021 --(------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 ---------- ---------- ---------- ---------- ---------- ---------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ------ggac aagaggcaaa agaugggaa- ucguuuauaa 1501 aaaaaccau- ---------- ---------- ---------- -)-------- -----u---- 1561 ---------- ---------- ---------- ---------- ---------- ---------- 1621 ----gagccc c-c--auca| --UA|CACU- U-C-U|AAAU |UGC-C-GGG |GAGU----| 1681 G-CC------ ---------- ---------- -|Cgu----- ---------- ---------- 1741 ---------- ---------- ---------- ---------- --------GA GG|------C 1801 CU-------- UG-AC|U-AC C|-------- ---------- ---------- ---------- 1861 ---|GCGGU- CC-------- ------(--- -------gcc (-gaga)ggu gagagcga(g 1921 caa)ucguuc a)-------- --G-G-A-C- G-C|agca|G U-G-U-A-C- (guag-ug-- 1981 ---------- --------)- GU-A-C--A- U|-------G GA-U|GGU-A AAA-AC-GU- 2041 CA--A-GG-| -aua------ ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- g-GGU|-UGA -|UC-CGCA| GGG|-AAg-- 2221 |CGC------ ------(--- ---------- ---------- ---------- ---------- 2281 ---------- ----)|-|g| ag----|ugc c--------- ---------- ---------- 2341 (g------cc ---------- (augguc)-- --------gg ug-------- ---------- 2401 -------)-- ---------- ---------- ---------- ---------- -------|-- 2461 --------gg ca-|a|a|g- ---------- -GCG|--AA| CCU|--UCA| GA-GACU-C| 2521 -UAA|UGG-A --G-UG|G|G C--------- ---------- -(gcaa---- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------) ---------- 2701 ------GCU- |UAA-GG-GA |GA-GUC|C| A|AU-----| c----|cacu gg-------- 2761 ----(-gaaa ---------- )--------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---------- ---------- 2881 --|------- cc--a-g--- g|-------- --|-uccaca g--------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- -|-c-aguaa c--|ggggu- ga--(--u-- 3121 -gc------- ---------- ---------- ---------- ---------- ---------- 3181 ---------- ---------- -----)--uc g-cccc|--- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ---------- ---------- ---------- ---------- ---------- ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- --|-agagg- a--|------ ---------- ------cugu 4021 gga|------ --------|a ggca-uc--- -cac------ ---------- ---------( 4081 c-acc--aaa ag--ggugu- ---------- ---------- ---------- ---------- 4141 -)-------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- --------|- --gug--ugu u-gucg|--- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------| ----ggua-g ca-------| -----AU|G- -||gcc-agc agccgc| // LOCUS Por.k.2.1 4557 bp RNA RNA 09-JUL-1998 DEFINITION Porphyra katadae. subsp. Porphyra katadae isolate Kawatana Yamaguchi. ACCESSION No information KEYWORDS No information. SOURCE Porphyra katadae. subsp. Porphyra katadae isolate Kawatana Yamaguchi. ORGANISM Porphyra katadae. REFERENCE 1 (sites) AUTHORS Kunimoto,M., Yamamoto,Y., Kaminishi,Y., Mizukami,Y. and Kito,H . TITLE A discrimination of Porphyra species (Rhodophyta) based on the sequences of small subunit ribosomal RNA gene JOURNAL Published Only in DataBase (1998) In press STANDARD No information COMMENTS Sequence information (bases 1 to 4557) Corresponding GenBank entry: AB013184 LOCUS AB013184 3024 bp DNA PLN 09-JUL-1998 DEFINITION Porphyra katadae gene for small subunit rRNA, isolate Kawatana Yamaguchi. ACCESSION AB013184 NID g3298495 KEYWORDS small subunit ribosomal RNA; SSU rRNA. SOURCE Porphyra katadae gametophyte thallus DNA. ORGANISM Porphyra katadae Eukaryota; Rhodophyta; Bangiophyceae; Bangiales; Bangiaceae; Porphyra. REFERENCE 1 (bases 1 to 3024) AUTHORS Kunimoto,M., Yamamoto,Y., Kaminishi,Y., Mizukami,Y. and Kito,H. TITLE A discrimination of Porphyra species (Rhodophyta) based on the sequences of small subunit ribosomal RNA gene JOURNAL Published Only in DataBase (1998) In press REFERENCE 2 (bases 1 to 3024) AUTHORS Kunimoto,M., Yamamoto,Y., Kaminishi,Y., Mizukami,Y. and Kito,H. TITLE Direct Submission JOURNAL Submitted (21-APR-1998) to the DDBJ/EMBL/GenBank databases. Masahiko Kunimoto, National Fisheries University, Food Science; Nagatahon-machi 2-7-1, Shimonoseki, Yamaguchi 759-6595, Japan (E-mail:jkunimo@fish-u.ac.jp, Tel:0832-86-5111, Fax:0832-86-2292) FEATURES Location/Qualifiers source 1..3024 /organism="Porphyra katadae" /note="collection_site: Kawatana Yamaguchi" /db_xref="taxon:76161" /dev_stage="gametophyte" /tissue_type="thallus" primer_bind 1..22 /note="PCR primer" precursor_RNA <1..>3024 /note="precursor of small subunit ribosomal RNA (SSU rRNA)" exon 23..568 /note="putative" /product="SSU rRNA" intron 569..1169 /note="putative" exon 1170..2406 /note="putative" /product="SSU rRNA" intron 2407..2994 /note="group I intron; putative" exon 2995..3024 /note="putative" /product="SSU rRNA" BASE COUNT 758 a 677 c 856 g 733 t BASE COUNT 161 a 156 c 187 g 122 t 3931 others ORIGIN 1 |gggcaaguc uggU||g--- -------(-- --aaccuagu uccacucucg ugucuc-gcc 61 u--------c gugccauucg aacggcacgu uggcgcacc- --------gu gugaagcauc 121 --aagcccuc --guuaaaau aaaa----ca g--------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- ---------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 -------|-- ----c|Gcca ga--|----- ---------- -u-|gucucc c--------- 781 ---------- ---------- --------(u uccgga---a gccaggucug gc-------- 841 --agguauau agagcacaca accaaaaagg ggccaguaua cgcu------ ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------gg c|--ug---- -----|ugcg c-----gcu- au-ucug--- -----uu--- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 ---------- ---------- ---------- ---------- ---------- ---------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ----ggaccu guacaagggc aggaggcaaa agaugggaa- ccacuucuuu 1501 ugguugauca a--------- ---------- ---------- ---------- -----u---- 1561 ---------- ---------- ---------- ---------- ---------- ---------- 1621 ----gagccc c-c--auca| --UA|CACU- U-C-U|AAAU |UGU-C-GGG |GAGU----| 1681 G-CC------ ---------- ---------- -|Cgc----- ---------- ---------- 1741 ---------- ---------- ---------- ---------- --------AA AG|------C 1801 CU-------- UG-AC|U-AC C|-------- ---------- ---------- ---------- 1861 ---|GCGGU- CC-------- ------(--- -------gcc (-gaga)ggu gagagcga(g 1921 uaa)ucguuc a)-------- --G-G-A-C- G-C|agca|G U-G-UUA-U- (guag-ug-- 1981 ---------- --------)- GU-A-C--A- C|-------G GA-U|GGU-A AAA-AC-GU- 2041 CA--A-GG-| -aua------ ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- g-GGU|-UGA -|UC-CGCA| GGG|-AAg-- 2221 |CGC------ ------(--- ---------- ---------- ---------- ---------- 2281 ---------- ----)|-|g| ag----|ugc cgac------ ---------- ---------- 2341 (c-ugc--cu u--------- (uaug-c)-- -------aag a--------- ---------- 2401 -------)-- ---------- ---------- ---------- ---------- -------|-- 2461 ----guu-gg ca-|a|a|g- ---------- -GCG|--AA| CCU|--UCA| GA-GACU-C| 2521 -UAA|UGG-A --G-UG|G|G C--------- ---------- -(gcaa---- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------) ---------- 2701 ------GCU- |UAA-GG-GA |GA-GUC|C| A|AU-----| c----|cacu gg-------- 2761 ----(-gaaa ---------- )--------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---------- ---------- 2881 --|------- cc--a-g--- g|-------- --|-uccaca g--------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- -|-c-aguaa c--|ggggu- ga--(--u-- 3121 -gc------- ---------- ---------- ---------- ---------- ---------- 3181 ---------- ---------- -----)--uc g-cccc|--- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ---------- ---------- ---------- ---------- ---------- ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- --|-agagg- a--|------ ---------- ------cugu 4021 gga|------ --------|a ggca-c---- -cac------ ---------- ---------( 4081 ----c--aaa aa--g----- ---------- ---------- ---------- ---------- 4141 -)-------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- --------|- --gug----u u-gucg|--- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------| ----ggua-g ca-------| -----AU|G- -||gcc-agc agccgc| // LOCUS Por.tu.1.1 4557 bp RNA RNA 10-DEC-1998 DEFINITION Porphyra tenuipedalis.. ACCESSION No information KEYWORDS No information. SOURCE Porphyra tenuipedalis. ORGANISM Porphyra tenuipedalis. REFERENCE 1 (sites) AUTHORS Yamazaki,S., Shimomura,K., Miyata,T. and Saga,N. TITLE Phylogeny of Porphyra (Bangiales, Rhodophyta) inferred from SSU rDNA and morphological data JOURNAL Unpublished (1999) STANDARD No information COMMENTS Sequence information (bases 1 to 4557) Corresponding GenBank entry: AB015797 LOCUS AB015797 2299 bp DNA PLN 10-DEC-1998 DEFINITION Porphyra tenuipedalis gene for small subunit rRNA, partial sequence. ACCESSION AB015797 NID g3986219 KEYWORDS small subunit rRNA; small subunit ribosomal RNA. SOURCE Porphyra tenuipedalis DNA. ORGANISM Porphyra tenuipedalis Eukaryota; Rhodophyta; Bangiophyceae; Bangiales; Bangiaceae; Porphyra. REFERENCE 1 (sites) AUTHORS Yamazaki,S., Shimomura,K., Miyata,T. and Saga,N. TITLE Phylogeny of Porphyra (Bangiales, Rhodophyta) inferred from SSU rDNA and morphological data JOURNAL Unpublished (1999) REFERENCE 2 (bases 1 to 2299) AUTHORS Saga,N., Yamazaki,S. and Shimomura,K. TITLE Direct Submission JOURNAL Submitted (25-JUN-1998) to the DDBJ/EMBL/GenBank databases. Naotsune Saga, Tokai University, Center for Advanced Technology; 3-20-1, Orido, Shimizu, Shizuoka 424-8610, Japan (E-mail:nsaga@scc.u-tokai.ac.jp, Tel:+81-543-34-0411, Fax:+81-543-37-0947) FEATURES Location/Qualifiers source 1..2299 /organism="Porphyra tenuipedalis" /db_xref="taxon:78446" rRNA join(<1..555,1066..>2299) /product="small subunit rRNA" primer_bind 1..22 intron 556..1065 /note="intron-like structure" primer_bind 2280..2299 BASE COUNT 586 a 509 c 644 g 560 t BASE COUNT 137 a 135 c 170 g 93 t 4022 others ORIGIN 1 |gggcaaguc uggU||g--- -------(-- --aaccuagu uccacgugcu cuccu----- 61 ---------u gug-----uc gauggcacgc aggcguacc- ------gugu gaagcauauc 121 --aagcccuc --guuaaaaa aaaa----cg g--------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- ---------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 -------|-- ----c|Gcca ga--|----- ---------- -u-|guc--- ---------- 781 ---------- ---------- ---------- ---------- ---------- ---------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 ---------- ---------- ---------- ---------- ---------- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 ---------- ---------- ---------- ---------- ---------- ---------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- -----ucuuc cggaaacgga agcaggcaaa agaugggaau cgugucuaua 1501 caaccaa--- ---------- ---------- ---------- -)-------- -----u---- 1561 ---------- ---------- ---------- ---------- ---------- ---------- 1621 ----gagccc c-c--auca| --UA|CACU- U-C-G|AAAU |UGU-C-GGG |GAGU----| 1681 G-CC------ ---------- ---------- -|Cgc----- ---------- ---------- 1741 ---------- ---------- ---------- ---------- --------GA GG|------C 1801 CU-------- UG-AC|U-AC C|-------- ---------- ---------- ---------- 1861 ---|GCGGU- CC-------- ------(--- -------gcc (-gaga)ggu gagggcga(g 1921 uga)ucgcuc a)-------- --G-G-A-C- G-C|agca|G U-G-U-A-C- (guag-ug-- 1981 ---------- --------)- GU-A-C--A- C|-------G GA-U|GGU-A AAA-AC-GU- 2041 CA--A-GG-| -aua------ ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- g-GGU|-UGA -|UC-CGCA| GGG|-AAg-- 2221 |CGC------ ------(--- ---------- ---------- ---------- ---------- 2281 ---------- ----)|-|g| ag----|ugc cg-------- ---------- ---------- 2341 (g------cc u---gcccuc u(uau-)ggg gggu----gg caca------ ---------- 2401 -------)-- ---------- ---------- ---------- ---------- -------|-- 2461 ------c-gg ca-|a|a|g- ---------- -GCG|--AA| CCU|--UCA| GA-GACU-C| 2521 -UAA|UGG-A --G-UG|G|G C--------- ---------- -(gcaa---- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------) ---------- 2701 ------GCU- |UAA-GG-GA |GA-GUC|C| A|AU-----| c----|cacu gg-------- 2761 ----(-gaaa ---------- )--------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---------- ---------- 2881 --|------- cc--a-g--- g|-------- --|-uccaca g--------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- -|-c-aguaa c--|ggggu- ga--(--u-- 3121 -gc------- ---------- ---------- ---------- ---------- ---------- 3181 ---------- ---------- -----)--uc g-cccc|--- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ---------- ---------- ---------- ---------- ---------- ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- --|-cgagg- a--|------ ---------- ------cugu 4021 gga|------ --------|a ggca-c---- -cac------ ---------- ---------( 4081 ----c-aaaa aaa-g----- ---------- ---------- ---------- ---------- 4141 -)-------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- --------|- --gug----u u-gucg|--- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------| ----gguagc -a-------| -----AU|G- -||gcc-agc agccgc| // LOCUS Nae.sp.3.1 4557 bp RNA RNA 06-OCT-1994 DEFINITION Naegleria sp. str. NG434; group I intron. ACCESSION X79069 KEYWORDS group I intron. SOURCE Naegleria sp. str. NG434. ORGANISM Naegleria sp. REFERENCE 1 (bases 1 to 375) AUTHORS De Jonckheere,J.F. and Brown,S. TITLE Loss of the ORF in the SSUrDNA group I intron of one Naegleria lineage JOURNAL Nucleic Acids Res. 22 (19), 3925-3927 (1994) STANDARD No information REFERENCE 2 (bases 1 to 375) AUTHORS De Jonckheere,J.F. TITLE Direct Submission JOURNAL Submitted (02-MAY-1994) to the EMBL/GenBank/DDBJ databases. J.F. De Jonckheere, Dept of Microbiology, Protozoology Lab Inst voor Hygiene en Epidemiologie, Juliette Wytsmanstraat 14, 1050 Brussel, BELGIUM STANDARD No information COMMENTS Sequence information (bases 1 to 4557) Corresponding GenBank entry: X79069 NCBI gi: 556847 BASE COUNT 112 a 83 c 101 g 94 t 4167 others ORIGIN 1 |~~~~~~~uc uggU||ga-- -------(-- -----acug- ---------- ---------- 61 ---------- ---------- --)------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- ---------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 -------|-- ---uc|Gcca ga--|----- ---------a au-|AGUGAc cca------- 781 ---------- ---------- --------(g caa------- ---------- ---------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ----ugg-g- 961 ----G--AGC U|--A----- -----|GUC- GCau----ug ac-caaa--- -----g---- 1021 g-(uga---- ---------- ---------- ---------u c--------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 ---------- ---------- ---------- ---------- ---------- ---------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- ---------- -)-------- ----cc---- 1561 ---------- ---------- ---------- ---------- ---------- ---------- 1621 ----uuuggu a-G--CGGC| --AA|AACG- A-U-C|AAAU |UG--C-GGG |aa-g----| 1681 C-GC------ ---------- ---------- -|Uucuuu-- ---------- ---------- 1741 ---------- ---------- ---------- ---------- --------UA AG|------C 1801 CUa------- AC-AG|U-AC C|-------- ---------- ---------- ---------- 1861 ---|GCU-C- G--------- ------(gua a--------- ---------- ---------- 1921 ---------- -)-------- ----C-G-A- G-C|uau-|G A-C-A-G-G- (agaaaag-- 1981 ---------- --------)- CC-U-G--U- A|-------G GA-U|GGU-A ACA-AG-CU- 2041 GUu-A-GG-| -uaug----- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- --GCG|-UAA -|UC-CGCA| GCC|-AA--- 2221 |gcuaucgu- ------(--- ---------- ---------- ---------- ---------- 2281 ---------- ----)|-|u| aa----|aca aau------- ---------- ---------- 2341 (c-ccu-aau gc-------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- -------|-- 2461 -----au-uu gu-|u|u|-- ------acga gagc|--AG| GGU|--UCA| GA-GACU-A| 2521 -GAU|GGU-C --G-UU|G|G CUaag----- ---------- -(guuu---- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------) ---------- 2701 --cuuAGCU- |UAA-GA-UA |UA-GUC|C| a|AA-----| cc---|cacu c--------- 2761 ----(-gaug auaaa----- )--------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---------- ---------- 2881 --|------- -g--a-g-u- g|-------- --|-ugucaa uu-------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- -|----gcaa ---|ggcg-- ----(--cua 3121 auca------ ---------- ---------- ---------- ---------- ---------- 3181 ---------- ---------- -----)---- --cgcc|--- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ---------- ---------- ---------- ---------- ---------- ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- --|---cca- g--|------ ---------- --a---auug 4021 aug|------ ---------- ---------- ---------- ---------- ---------- 4081 ---------- ---------- ---------- ---------- ---------- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- ---------- ---------- ---------- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------u --ucgguagu a--------| -----UU|G- -||gcc-agc acc~~~| // LOCUS Nae.sp.4.1 4557 bp RNA RNA 06-OCT-1994 DEFINITION Naegleria sp. str. NG597; group I intron. ACCESSION X79070 KEYWORDS group I intron. SOURCE Naegleria sp. str. NG597. ORGANISM Naegleria sp. REFERENCE 1 (bases 1 to 375) AUTHORS De Jonckheere,J.F. and Brown,S. TITLE Loss of the ORF in the SSUrDNA group I intron of one Naegleria lineage JOURNAL Nucleic Acids Res. 22 (19), 3925-3927 (1994) STANDARD No information REFERENCE 2 (bases 1 to 375) AUTHORS De Jonckheere,J.F. TITLE Direct Submission JOURNAL Submitted (02-MAY-1994) to the EMBL/GenBank/DDBJ databases. J.F. De Jonckheere, Dept of Microbiology, Protozoology Lab Inst voor Hygiene en Epidemiologie, Juliette Wytsmanstraat 14, 1050 Brussel, BELGIUM STANDARD No information COMMENTS Sequence information (bases 1 to 4557) Corresponding GenBank entry: X79070 NCBI gi: 556848 BASE COUNT 115 a 82 c 99 g 94 t 4167 others ORIGIN 1 |~~~~~~~uc uggU||ga-- -------(-- -----acug- ---------- ---------- 61 ---------- ---------- --)------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- ---------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 -------|-- ---uc|Gcca ga--|----- ---------a au-|AGUGAc cca------- 781 ---------- ---------- --------(g caa------- ---------- ---------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ----ugg-g- 961 ----G--AGC U|--A----- -----|GUC- GCau----ug ac-caaa--- -----g---- 1021 g-(uga---- ---------- ---------- ---------u a--------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 ---------- ---------- ---------- ---------- ---------- ---------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- ---------- -)-------- ----cc---- 1561 ---------- ---------- ---------- ---------- ---------- ---------- 1621 ----uuugau a-G--CGGC| --AA|AACG- A-U-C|AAAU |UG--C-GGG |aa-g----| 1681 C-GC------ ---------- ---------- -|Uucuuu-- ---------- ---------- 1741 ---------- ---------- ---------- ---------- --------UA AG|------C 1801 CUa------- AC-AG|U-AC C|-------- ---------- ---------- ---------- 1861 ---|GCU-C- G--------- ------(gua a--------- ---------- ---------- 1921 ---------- -)-------- ----C-G-A- G-C|uau-|G A-C-A-G-G- (agaaaag-- 1981 ---------- --------)- CC-U-G--U- A|-------G GA-U|GGU-A ACA-AG-CU- 2041 GUu-A-GG-| -uaug----- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- --GCG|-UAA -|UC-CGCA| GCC|-AA--- 2221 |gcuaucgu- ------(--- ---------- ---------- ---------- ---------- 2281 ---------- ----)|-|u| aa----|aca aau------- ---------- ---------- 2341 (c-ccu-aau gc-------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- -------|-- 2461 -----au-uu gu-|u|u|-- ------acga gagc|--AG| GGU|--UCA| GA-GACU-A| 2521 -GAU|GGU-C --G-UU|G|G CUaag----- ---------- -(auuu---- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------) ---------- 2701 --cuuAGCU- |UAA-GA-UA |UA-GUC|C| a|AA-----| cc---|cacu c--------- 2761 ----(-gaug auaaa----- )--------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---------- ---------- 2881 --|------- -g--a-g-u- g|-------- --|-ugucaa uu-------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- -|----gcaa ---|ggcg-- ----(--cua 3121 auca------ ---------- ---------- ---------- ---------- ---------- 3181 ---------- ---------- -----)---- --cgcc|--- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ---------- ---------- ---------- ---------- ---------- ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- --|---cca- g--|------ ---------- --a---auug 4021 aug|------ ---------- ---------- ---------- ---------- ---------- 4081 ---------- ---------- ---------- ---------- ---------- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- ---------- ---------- ---------- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------u --ucgguagu a--------| -----UU|G- -||gcc-agc acc~~~| // LOCUS Nae.sp.5.1 4557 bp RNA RNA 06-OCT-1994 DEFINITION Naegleria sp. str. NG650; group I intron. ACCESSION X79071 KEYWORDS group I intron. SOURCE Naegleria sp. str. NG650. ORGANISM Naegleria sp. REFERENCE 1 (bases 1 to 375) AUTHORS De Jonckheere,J.F. and Brown,S. TITLE Loss of the ORF in the SSUrDNA group I intron of one Naegleria lineage JOURNAL Nucleic Acids Res. 22 (19), 3925-3927 (1994) STANDARD No information REFERENCE 2 (bases 1 to 375) AUTHORS De Jonckheere,J.F. TITLE Direct Submission JOURNAL Submitted (02-MAY-1994) to the EMBL/GenBank/DDBJ databases. J.F. De Jonckheere, Dept of Microbiology, Protozoology Lab Inst voor Hygiene en Epidemiologie, Juliette Wytsmanstraat 14, 1050 Brussel, BELGIUM STANDARD No information COMMENTS Sequence information (bases 1 to 4557) Corresponding GenBank entry: X79071 NCBI gi: 556849 BASE COUNT 112 a 84 c 101 g 93 t 4167 others ORIGIN 1 |~~~~~~~uc uggU||ga-- -------(-- -----acug- ---------- ---------- 61 ---------- ---------- --)------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- ---------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 -------|-- ---uc|Gcca ga--|----- ---------a au-|AGUGAc cca------- 781 ---------- ---------- --------(g caa------- ---------- ---------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ----ugg-g- 961 ----G--AGC U|--A----- -----|GUC- GCau----ug ac-caaa--- -----g---- 1021 g-(uga---- ---------- ---------- ---------u c--------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 ---------- ---------- ---------- ---------- ---------- ---------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- ---------- -)-------- ----cc---- 1561 ---------- ---------- ---------- ---------- ---------- ---------- 1621 ----uuuggu a-G--CGGC| --AA|AACG- A-U-C|AAAU |UG--C-GGG |aa-g----| 1681 C-GC------ ---------- ---------- -|Uucuuu-- ---------- ---------- 1741 ---------- ---------- ---------- ---------- --------UA AG|------C 1801 CUa------- AC-AG|U-AC C|-------- ---------- ---------- ---------- 1861 ---|GCU-C- G--------- ------(gca a--------- ---------- ---------- 1921 ---------- -)-------- ----C-G-A- G-C|uau-|G A-C-A-G-G- (agaaaag-- 1981 ---------- --------)- CC-U-G--U- A|-------G GA-U|GGU-A ACA-AG-CU- 2041 GUu-A-GG-| -uaug----- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- --GCG|-UAA -|UC-CGCA| GCC|-AA--- 2221 |gcuaucgu- ------(--- ---------- ---------- ---------- ---------- 2281 ---------- ----)|-|u| aa----|aca aau------- ---------- ---------- 2341 (c-ccu-aau gc-------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- -------|-- 2461 -----au-uu gu-|u|u|-- ------acga gagc|--AG| GGU|--UCA| GA-GACU-A| 2521 -GAU|GGU-C --G-UU|G|G CUaag----- ---------- -(guuu---- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------) ---------- 2701 --cuuAGCU- |UAA-GA-UA |UA-GUC|C| a|AA-----| cc---|cacu c--------- 2761 ----(-gaug auaaa----- )--------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---------- ---------- 2881 --|------- -g--a-g-u- g|-------- --|-ugucaa uu-------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- -|----gcaa ---|ggcg-- ----(--cua 3121 auca------ ---------- ---------- ---------- ---------- ---------- 3181 ---------- ---------- -----)---- --cgcc|--- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ---------- ---------- ---------- ---------- ---------- ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- --|---cca- g--|------ ---------- --a---auug 4021 aug|------ ---------- ---------- ---------- ---------- ---------- 4081 ---------- ---------- ---------- ---------- ---------- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- ---------- ---------- ---------- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------u --ucgguagu a--------| -----UU|G- -||gcc-agc acc~~~| // LOCUS C1-S-651-V 4557 bp RNA RNA ~?~???? DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 4557) Corresponding GenBank entry: DIVIDER BASE COUNT 0 a 0 c 0 g 0 t 4557 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ------|--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---|--|--- -------||| |||||||||| |||~|..... 361 .......... .......... .......... .......... .......... .......... 421 .......... .......... .......... .......... .......... .......... 481 .......... .......... .......... .......... .......... .......... 541 .......... .......... .......... .......... .......... .......... 601 .......... .......... .......... .......... .......... .......... 661 .......... .......... .......... .......... .......... .......... 721 .......... .......... ....|..... .......... ..-....... .......... 781 .......... .......... .......... .......... .......... .......... 841 .......... .......... .......... .......... .......... .......... 901 .......... .......... .......... .......... .......... .......... 961 .......... ..--...... .......... .......... .......... .......... 1021 .......... .......... .......... .......... .......... .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .......... .......... .......... .......... .......... 1201 .......... .......... .......... .......... .......... .......... 1261 .......... .......... .......... .......... .......... .......... 1321 .......... .......... .......... .......... .......... .......... 1381 .......... .......... .......... .......... .......... .......... 1441 .......... .......... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... .......... .......... .......... .......... .......... 1621 .......... .......... .......... .......... ......-... ......---. 1681 ....------ ---------- ---------- -......... .......... .......... 1741 .......... .......... .......... .......... .......... .......... 1801 .......... .......... ...------- ---------- ---------- ---------- 1861 ---....... .......... .......... .......... .......... .......... 1921 .......... .......... .......... .......... .......-.. .......... 1981 .......... .......... .......... .|........ .......... .......... 2041 .......... -......... .......... .......... .......... .......... 2101 .......... ....-..... .......... .......... .......... .......... 2161 .......... .......... .......... .......... .......... ....-..... 2221 .......... ....--(... .......... .......... .......... .......... 2281 .......... ....)|.|.| .......... .......... .......... .......... 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......-.. .......|.- -......... .......... .......... .......... 2521 ........-. ...-...... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... -......... 2701 .........- .......... .......... .......... .......... .......... 2761 .......... .......--- .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... .......... 2881 .......... ..--...... .......... .......... .......... .......... 2941 .......... .......... .......... .......... .......... .......... 3001 .......... .......... .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .....--... 3121 .......... .......... .......... .......... .......... .......... 3181 .......... .......... .......... .......... .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .......... .......... .......... 3361 .......... .......... .......... .......... .......... .......... 3421 .......... .......... .......... .......... .......... .......... 3481 .......... .......... .......... .......... .......... .......... 3541 .......... .......... .......... .......... .......... .......... 3601 .......... .......... .......... .......... .......... .......... 3661 .......... .......... .......... .......... .......... .......... 3721 .......... .......... .......... .......... .......... .......... 3781 .......... .......... .......... .......... .......... .......... 3841 .......... .......... .......... .......... .......... .......... 3901 .......... .......... .......... .......... .......... .......... 3961 .......... .......... .......... .--....... .......... ...---.... 4021 ....---... .......... .......... .....----- ---------- ---------. 4081 .......... .......... .......... .......... .......... .......... 4141 .......... .......... .......... .......... .......... .......... 4201 .......... .......... .......... .......... .......... .......... 4261 .......... .......... .......... .......... .......... ......---- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 --------.. --........ .......... .........- -.....-... ......| // LOCUS Amp.sp.1.3 4557 bp RNA RNA 28-JAN-191 DEFINITION Amphikrikos sp. Hegewald 1995-26. ACCESSION No information KEYWORDS No information. SOURCE Amphikrikos sp. Hegewald 1995-26. ORGANISM Amphikrikos sp. Hegewald 1995-26. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 4557) Corresponding GenBank entry: AF228690 LOCUS AF228690 3597 bp DNA PLN 17-APR-2000 DEFINITION Amphikrikos sp. Hegewald 1995-26 18S ribosomal RNA gene, partial sequence. ACCESSION AF228690 VERSION AF228690.1 GI:7578835 KEYWORDS . SOURCE Amphikrikos sp. Hegewald 1995-26. ORGANISM Amphikrikos sp. Hegewald 1995-26 Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; Oocystaceae; Amphikrikos. REFERENCE 1 (bases 1 to 3597) AUTHORS Hepperle,D., Hegewald,E. and Krienitz,L. TITLE Phylogenetic Position of Oocystaceae (Chlorophyta) JOURNAL Unpublished REFERENCE 2 (bases 1 to 3597) AUTHORS Hepperle,D., Hegewald,E. and Krienitz,L. TITLE Direct Submission JOURNAL Submitted (26-JAN-2000) Dep. Stratified Lakes, Institute of Freshwater Ecology and Inland Fisheries, Alte Fischerhuette 2, Stechlin, Brandenburg 16775, Germany FEATURES Location/Qualifiers source 1..3597 /organism="Amphikrikos sp. Hegewald 1995-26" /strain="Hegewald 1995-26" /db_xref="taxon:120763" rRNA join(<1..129,557..968,1387..1575,2006..2590, 2995..>3425) /product="18S ribosomal RNA" BASE COUNT 871 a 849 c 1054 g 816 t 7 others BASE COUNT 102 a 100 c 135 g 96 t 4124 others ORIGIN 1 |gcuguuacc uugA||---- -------(-- --ccuauc-- ---------- ---------- 61 ---------- ---------- --)------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- ---------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 -------|-- -----|Uuga gg--|----- -------aaa aa-|AGCGGG cuu------- 781 ---------- ---------- --------(g aaaa------ ---------- ---------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ----g-g-gu 961 -uuCC--CGC U|--A----- -----|GUG- GG-------- gc-ugcu--- -----gc--- 1021 --(ucc---- ---------- ---------- ---------u uu-------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 ---------- ---------- ---------- ---------- ---------- ---------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- ---------- -)-------- ----gc---- 1561 ---------- ---------- ---------- ---------- ---------- ---------- 1621 ----ggcaga --C--UCGC| --AA|cacc- g-u-c|aaau |ug--c-ucG |GAAA----| 1681 U-CC------ ---------- ---------- -|Ugg----- ---------- ---------- 1741 ---------- ---------- ---------- ---------- --------UA UG|------U 1801 CA-------- AC-GG|U-AC C|-------- ---------- ---------- ---------- 1861 ---|GCC-U- CU-G-G-U-- -U-UG-(GAA A--------- ---------- ---------- 1921 ---------- -)-CAAG-CC --A-G-A-G- G-C|A---|C C-G-g-G-GG (GAAA----- 1981 ---------- --------)C UC-g-C--G- G|-------G UA-U|GGU-G AUA-AU-CU- 2041 GU--U-GA-| -Auag----- ------|--- ---------- ---------- ---------- 2101 ---------- ---------- ---------- -|-------- ---------- ---------- 2161 ---------- ---------- ---------- --GGA|-CGA -|Ug-agca| GCC|-AA--- 2221 |GCUC----- ------(--- ---------- ---------- ---------- ---------- 2281 ---------- ----)|-|U| AC----|ggu agc------- ---------- ---------- 2341 (g-cca-a-- ---------- ---------- ---------- ---------- ---------- 2401 -------)-- ---------- ---------- ---------- ---------- -------|-- 2461 -----gc-ua cu-|A|U|-- ---------- GGGU|--GC| AGU|--uca| CA-GACU-A| 2521 -aau|guc-g --g-ug|g|G UCuc------ ---------- -(uuuuuc-- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---gagGCU- |UAA-GA-UA |UA-GUC|G| -|GC-----| ccg--|cgcc ---------- 2761 ----(-GAGA ---------- )--------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---------- ---------- 2881 --|------- ----g-g-c- g|-------- --|-agcccu uuagaggauc ccgguuauuu 2941 aaacaaccug ggggagag-- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---------- ---------- 3121 ---------- ---------- ---------- ---------- ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ---------- ---------- ---------- ---------- ---------- ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ------cua- a--|------ ---------- --a---gggg 4021 gcu|------ --------|g ggag-u---- ---------- ---------- ---------( 4081 aauagucgca agacggcaa- ---------- ---------- ---------- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- --------|- ---------g c-ucuu|--- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------| ---------- --uauggag| -----cg|G- -||gcc-ucc cagcug| // LOCUS C1-S-788 4557 bp RNA RNA ~?~???? DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 4557) Corresponding GenBank entry: DIVIDER BASE COUNT 0 a 0 c 0 g 0 t 4557 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ------|--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---|--|--- -------||| |||||||||| |||~|..... 361 .......... .......... .......... .......... .......... .......... 421 .......... .......... .......... .......... .......... .......... 481 .......... .......... .......... .......... .......... .......... 541 .......... .......... .......... .......... .......... .......... 601 .......... .......... .......... .......... .......... .......... 661 .......... .......... .......... .......... .......... .......... 721 .......... .......... ....|..... .......... ..-....... .......... 781 .......... .......... .......... .......... .......... .......... 841 .......... .......... .......... .......... .......... .......... 901 .......... .......... .......... .......... .......... .......... 961 .......... ..--...... .......... .......... .......... .......... 1021 .......... .......... .......... .......... .......... .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .......... .......... .......... .......... .......... 1201 .......... .......... .......... .......... .......... .......... 1261 .......... .......... .......... .......... .......... .......... 1321 .......... .......... .......... .......... .......... .......... 1381 .......... .......... .......... .......... .......... .......... 1441 .......... .......... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... .......... .......... .......... .......... .......... 1621 .......... .......... .......... .......... ......-... ......---. 1681 ....------ ---------- ---------- -......... .......... .......... 1741 .......... .......... .......... .......... .......... .......... 1801 .......... .......... ...------- ---------- ---------- ---------- 1861 ---....... .......... .......... .......... .......... .......... 1921 .......... .......... .......... .......... .......-.. .......... 1981 .......... .......... .......... .|........ .......... .......... 2041 .......... -......... .......... .......... .......... .......... 2101 .......... ....-..... .......... .......... .......... .......... 2161 .......... .......... .......... .......... .......... ....-..... 2221 .......... ....--(... .......... .......... .......... .......... 2281 .......... ....)|.|.| .......... .......... .......... .......... 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......-.. .......|.- -......... .......... .......... .......... 2521 ........-. ...-...... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... -......... 2701 .........- .......... .......... .......... .......... .......... 2761 .......... .......--- .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... .......... 2881 .......... ..--...... .......... .......... .......... .......... 2941 .......... .......... .......... .......... .......... .......... 3001 .......... .......... .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .....--... 3121 .......... .......... .......... .......... .......... .......... 3181 .......... .......... .......... .......... .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .......... .......... .......... 3361 .......... .......... .......... .......... .......... .......... 3421 .......... .......... .......... .......... .......... .......... 3481 .......... .......... .......... .......... .......... .......... 3541 .......... .......... .......... .......... .......... .......... 3601 .......... .......... .......... .......... .......... .......... 3661 .......... .......... .......... .......... .......... .......... 3721 .......... .......... .......... .......... .......... .......... 3781 .......... .......... .......... .......... .......... .......... 3841 .......... .......... .......... .......... .......... .......... 3901 .......... .......... .......... .......... .......... .......... 3961 .......... .......... .......... .--....... .......... ...---.... 4021 ....---... .......... .......... .....----- ---------- ---------. 4081 .......... .......... .......... .......... .......... .......... 4141 .......... .......... .......... .......... .......... .......... 4201 .......... .......... .......... .......... .......... .......... 4261 .......... .......... .......... .......... .......... ......---- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 --------.. --........ .......... .........- -.....-... ......| // LOCUS My.ca.1.1S 4557 bp RNA RNA 19-JAN-1999 DEFINITION Myriosclerotinia caricisampullacea. str. 1898.P. ACCESSION No information KEYWORDS No information. SOURCE Myriosclerotinia caricisampullacea. str. 1898.P. ORGANISM Myriosclerotinia caricisampullacea. REFERENCE 1 (bases 1 to 375) AUTHORS Holst-Jensen,A., Vaage,M., Schumacher,T. and Johansen,S. TITLE of group I introns between closely related plant pathogenic fungi Structural characteristics and possible horizontal transfer JOURNAL Mol. Biol. Evol. 16, 114-126 (1999) STANDARD No information COMMENTS Sequence information (bases 1 to 4557) Corresponding GenBank entry: AJ226069 LOCUS MCASSUINT 483 bp DNA UNA 19-JAN-1999 DEFINITION Myriosclerotinia caricisampullacea gene for 18S ribosomal RNA, strain 1898.P. ACCESSION AJ226069 NID g4165291 KEYWORDS 18S rRNA; group I intron; small subunit ribosomal RNA. SOURCE Myriosclerotinia caricisampullacea. ORGANISM Myriosclerotinia caricisampullacea unclassified. REFERENCE 1 (bases 1 to 483) AUTHORS Holst-Jensen,A., Vaage,M., Schumacher,T. and Johansen,S. TITLE Structural characteristics and possible horizontal transfer of group I introns between closely related plant pathogenic fungi JOURNAL Mol. Biol. Evol. 16, 114-126 (1999) REFERENCE 2 (bases 1 to 483) AUTHORS Holst-Jensen,A. TITLE Direct Submission JOURNAL Submitted (23-FEB-1998) Holst-Jensen A., Division of Botany, Department of Biology, University of Oslo, P.O. Box 1045, Blindern 0316, Oslo, NORWAY FEATURES Location/Qualifiers source 1..483 /organism="Myriosclerotinia caricisampullacea" /strain="1898.P on Carex aquatilis" rRNA <1..6 /gene="18S rRNA" /product="18S ribosomal RNA" gene 1..483 /gene="18S rRNA" intron 7..435 /gene="18S rRNA" /note="group-I intron" rRNA 436..>483 /gene="18S rRNA" /product="18S ribosomal RNA" BASE COUNT 154 a 90 c 95 g 144 t BASE COUNT 143 a 82 c 87 g 135 t 4110 others ORIGIN 1 |~~~~~~~ga cgaU||u--- -------(ua uuacaagacc auaagguuca aauuucaauu 61 ucaauggugu ucugccauuu ucacuauuuu ggaaauaguc uuuuggaagg agcaaccgaa 121 --cuuacaua cuucacucac cuuugaaauu gaaauuugac cuuugcaaaa gguuauc--- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- ---------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 ---------- ---ug|Gucg uc--|----- ---------- aa-|uaac-- ---------- 781 ---------- ---------- --------(a uauuaa---- ---------- ---------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 -------guu a|-------- -----|Guu- au-------- ---------- ---------- 1021 --(gca---- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 ---------- ---------- ---------- ---------- ---------- ---------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- ---------- -)-------- ---------- 1561 ---------- ---------- ---------- ---------- ---------- ---------- 1621 ---------- --a--uaaC| --AA|CACC- G-U-C|AAAU |UG--C-GGG |gaca----| 1681 U-CC------ ---------- ---------- -|uaaag--- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---gc|u-gu a|-------- ---------- ---------- -----auacu 1861 c-c|ccu-u- ua-u-u---- -g----(gaa a--------- ---------- ---------- 1921 ---------- -)---c--ga --u-a-a-a- g-g|c---|u u-g-u----- (caaaaugua 1981 cagu------ --------)- ---a-u--g- a|------uu aa--|ugc-g ucaaaA-ac- 2041 au--u-aa-| -gaaau---- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- --GGA|-UAA -|UC-CGCA| GCC|-AAu-- 2221 |ucc------ ------(--- ---------- ---------- ---------- ---------- 2281 ---------- ----)|-|u| aac---|gcc u--------- ---------- ---------- 2341 (u-a-c---- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- -------|-- 2461 --------ag guu|a|u|-- ---------- -gga|-ugc| cgu|--uca| CA-GACU-A| 2521 -GAC|GuC-G --G-UG|G|G GAGug----- ---------- -(guu----- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 --cacuucu- |uaa-ga-ua |UA-GUC|G| a|u------- -----|caca uauu------ 2761 ----(-gaaa ---------- )|-------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---------- ---------- 2881 --|-----ga ug--u-g-u- g|-------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---------- ---------- 3121 ---------- ---------- ---------- ---------- ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ---------- ---------- ---------- ---------- ---------- ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- ---------- 4021 ---------- ---------- ---------- ---------- ---------- ---------- 4081 ---------- ---------- ---------- ---------- ---------- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- ---------- ---------- ---------- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- --aguuuau- ---------- ------a|G- -||cag-aua ccgucg| // LOCUS My.cu.1.1S 4557 bp RNA RNA 21-JAN-1999 DEFINITION Myriosclerotinia curreyana. str. 739.1. ACCESSION No information KEYWORDS No information. SOURCE Myriosclerotinia curreyana. str. 739.1. ORGANISM Myriosclerotinia curreyana. REFERENCE 1 (bases 1 to 375) AUTHORS Holst-Jensen,A., Vaage,M., Schumacher,T. and Johansen,S. TITLE Structural characteristics and possible horizontal transfer of group I introns between closely related plant pathogenic fungi JOURNAL Mol. Biol. Evol. 16, 114-126 (1999) STANDARD No information COMMENTS Sequence information (bases 1 to 4557) Corresponding GenBank entry: AJ226070 LOCUS MCUSSUINA 346 bp DNA PLN 21-JAN-1999 DEFINITION Myriosclerotinia curreyana gene for 18S ribosomal RNA, strain 739.1. ACCESSION AJ226070 NID g4165519 KEYWORDS 18S rRNA; group I intron; small subunit ribosomal RNA. SOURCE Myriosclerotinia curreyana. ORGANISM Myriosclerotinia curreyana Eukaryota; Fungi; Ascomycota; Euascomycetes; Discomycetes; Leotiales; Sclerotiniaceae; Myriosclerotinia. REFERENCE 1 (bases 1 to 346) AUTHORS Holst-Jensen,A., Vaage,M., Schumacher,T. and Johansen,S. TITLE Structural characteristics and possible horizontal transfer of group I introns between closely related plant pathogenic fungi JOURNAL Mol. Biol. Evol. 16, 114-126 (1999) REFERENCE 2 (bases 1 to 346) AUTHORS Holst-Jensen,A. TITLE Direct Submission JOURNAL Submitted (23-FEB-1998) Holst-Jensen A., Division of Botany, Department of Biology, University of Oslo, P.O. Box 1045, Blindern 0316, Oslo, NORWAY FEATURES Location/Qualifiers source 1..346 /organism="Myriosclerotinia curreyana" /strain="739.1 on Juncus arcticus" /db_xref="taxon:87228" rRNA <1..6 /gene="18S rRNA" /product="18S ribosomal RNA" gene 1..346 /gene="18S rRNA" intron 7..298 /gene="18S rRNA" /note="group-I intron" rRNA 299..>346 /gene="18S rRNA" /product="18S ribosomal RNA" BASE COUNT 109 a 66 c 77 g 94 t BASE COUNT 98 a 58 c 69 g 85 t 4247 others ORIGIN 1 |~~~~~~~ga cgaU||ua-- -------(-- --auc----- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- ---------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 ---------- ---ug|Gucg uc--|----- ---------- aa-|uaac-- ---------- 781 ---------- ---------- --------(a uu-------- ---------- ---------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 -------guu a|-------- -----|Guu- au-------- ---------- ---------- 1021 --(aua---- ---------- ---------- ---------u u--------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 ---------- ---------- ---------- ---------- ---------- ---------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- ---------- ---------- ---------- 1561 ---------- ---------- ---------- ---------- ---------- ---------- 1621 ---------- --a--uaaC| --AA|CACC- G-U-C|AAAU |UG--C-GGG |gaca----| 1681 U-CC------ ---------- ---------- -|uaaag--- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---gc|u-gu a|-------- ---------- ---------- -----cuacu 1861 cuc|cuc-u- ua-u-u---- -g----(gaa a--------- ---------- ---------- 1921 ---------- -)---c--ga --u-a-g-g- g-g|u---|u c-g-u----- (uaaaaugua 1981 uagc------ --------)- ---a-u--g- a|------uu aa--|agc-c uaagaA-gc- 2041 uu--u-aa-| -gaaau---- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- --GGA|-caa -|UC-CGCA| GCC|-AAu-- 2221 |ucc------ ------(--- ---------- ---------- ---------- ---------- 2281 ---------- ----)|-|u| aac---|gcc u--------- ---------- ---------- 2341 (u-a-c---- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- -------|-- 2461 --------ag gcu|a|u|-- ---------- -gga|-ugc| cgu|--uca| CA-GACU-A| 2521 -GAC|GuC-G --G-UG|G|G GAGug----- ---------- -(gaauaaag ua-------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 --cacucuu- |uaa-ga-ua |UA-GUC|G| a|u------- -----|caca uguu------ 2761 ----(-gaaa ---------- )|-------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---------- ---------- 2881 --|-----ga ug--u-g-u- g|-------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---------- ---------- 3121 ---------- ---------- ---------- ---------- ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ---------- ---------- ---------- ---------- ---------- ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- ---------- 4021 ---------- ---------- ---------- ---------- ---------- ---------- 4081 ---------- ---------- ---------- ---------- ---------- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- ---------- ---------- ---------- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- --aguucau- ---------- ------a|G- -||cag-aua ccgucg| // LOCUS My.cu.2.1S 4557 bp RNA RNA 21-JAN-1999 DEFINITION Myriosclerotinia curreyana. str. 2461.P. ACCESSION No information KEYWORDS No information. SOURCE Myriosclerotinia curreyana. str. 2461.P. ORGANISM Myriosclerotinia curreyana. REFERENCE 1 (bases 1 to 375) AUTHORS Holst-Jensen,A., Vaage,M., Schumacher,T. and Johansen,S. TITLE fungi Structural characteristics and possible horizontal transfer of group I introns between closely related plant pathogenic JOURNAL Mol. Biol. Evol. 16, 114-126 (1999) STANDARD No information COMMENTS Sequence information (bases 1 to 4557) Corresponding GenBank entry: AJ226071 LOCUS MCUSSUINB 346 bp DNA PLN 21-JAN-1999 DEFINITION Myriosclerotinia curreyana gene for 18S ribosomal RNA, strain 2461.P. ACCESSION AJ226071 NID g4165560 KEYWORDS 18S rRNA; group I intron; small subunit ribosomal RNA. SOURCE Myriosclerotinia curreyana. ORGANISM Myriosclerotinia curreyana Eukaryota; Fungi; Ascomycota; Euascomycetes; Discomycetes; Leotiales; Sclerotiniaceae; Myriosclerotinia. REFERENCE 1 (bases 1 to 346) AUTHORS Holst-Jensen,A., Vaage,M., Schumacher,T. and Johansen,S. TITLE Structural characteristics and possible horizontal transfer of group I introns between closely related plant pathogenic fungi JOURNAL Mol. Biol. Evol. 16, 114-126 (1999) REFERENCE 2 (bases 1 to 346) AUTHORS Holst-Jensen,A. TITLE Direct Submission JOURNAL Submitted (23-FEB-1998) Holst-Jensen A., Division of Botany, Department of Biology, University of Oslo, P.O. Box 1045, Blindern 0316, Oslo, NORWAY FEATURES Location/Qualifiers source 1..346 /organism="Myriosclerotinia curreyana" /strain="2461.P on Juncus arcticus" /db_xref="taxon:87228" rRNA <1..6 /gene="18S rRNA" /product="18S ribosomal RNA" gene 1..346 /gene="18S rRNA" intron 7..298 /gene="18S rRNA" /note="group-I intron" rRNA 299..>346 /gene="18S rRNA" /product="18S ribosomal RNA" BASE COUNT 109 a 66 c 77 g 94 t BASE COUNT 98 a 58 c 69 g 85 t 4247 others ORIGIN 1 |~~~~~~~ga cgaU||ua-- -------(-- --auc----- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- ---------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 ---------- ---ug|Gucg uc--|----- ---------- aa-|uaac-- ---------- 781 ---------- ---------- --------(a uu-------- ---------- ---------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 -------guu a|-------- -----|Guu- au-------- ---------- ---------- 1021 --(aua---- ---------- ---------- ---------u u--------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 ---------- ---------- ---------- ---------- ---------- ---------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- ---------- ---------- ---------- 1561 ---------- ---------- ---------- ---------- ---------- ---------- 1621 ---------- --a--uaaC| --AA|CACC- G-U-C|AAAU |UG--C-GGG |gaca----| 1681 U-CC------ ---------- ---------- -|uaaag--- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---gc|u-gu a|-------- ---------- ---------- -----cuacu 1861 cuc|cuc-u- ua-u-u---- -g----(gaa a--------- ---------- ---------- 1921 ---------- -)---c--ga --u-a-g-g- g-g|u---|u c-g-u----- (uaaaaugua 1981 uagc------ --------)- ---a-u--g- a|------uu aa--|agc-c uaagaA-gc- 2041 uu--u-aa-| -gaaau---- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- --GGA|-caa -|UC-CGCA| GCC|-AAu-- 2221 |ucc------ ------(--- ---------- ---------- ---------- ---------- 2281 ---------- ----)|-|u| aac---|gcc u--------- ---------- ---------- 2341 (u-a-c---- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- -------|-- 2461 --------ag gcu|a|u|-- ---------- -gga|-ugc| cgu|--uca| CA-GACU-A| 2521 -GAC|GuC-G --G-UG|G|G GAGug----- ---------- -(gaauaaag ua-------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 --cacucuu- |uaa-ga-ua |UA-GUC|G| a|u------- -----|caca uguu------ 2761 ----(-gaaa ---------- )|-------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---------- ---------- 2881 --|-----ga ug--u-g-u- g|-------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---------- ---------- 3121 ---------- ---------- ---------- ---------- ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ---------- ---------- ---------- ---------- ---------- ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- ---------- 4021 ---------- ---------- ---------- ---------- ---------- ---------- 4081 ---------- ---------- ---------- ---------- ---------- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- ---------- ---------- ---------- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- --aguucau- ---------- ------a|G- -||cag-aua ccgucg| // LOCUS Myr.d.1.1 4557 bp RNA RNA 20-JAN-1999 DEFINITION Myriosclerotinia dennisii. str. 453.2. ACCESSION No information KEYWORDS No information. SOURCE Myriosclerotinia dennisii. str. 453.2. ORGANISM Myriosclerotinia dennisii. REFERENCE 1 (bases 1 to 375) AUTHORS Holst-Jensen,A., Vaage,M., Schumacher,T. and Johansen,S. TITLE fungi Structural characteristics and possible horizontal transfer of group I introns between closely related plant pathogenic JOURNAL Mol. Biol. Evol. 16, 114-126 (1999) STANDARD No information COMMENTS Sequence information (bases 1 to 4557) Corresponding GenBank entry: AJ226072 LOCUS MDESSUINT 348 bp DNA PLN 20-JAN-1999 DEFINITION Myriosclerotinia dennisii gene for 18S ribosomal RNA, strain 453.2. ACCESSION AJ226072 NID g4165561 KEYWORDS 18S rRNA; group I intron; small subunit ribosomal RNA. SOURCE Myriosclerotinia dennisii. ORGANISM Myriosclerotinia dennisii Eukaryota; Fungi; Ascomycota; Euascomycetes; Discomycetes; Leotiales; Sclerotiniaceae; Myriosclerotinia. REFERENCE 1 (bases 1 to 348) AUTHORS Holst-Jensen,A., Vaage,M., Schumacher,T. and Johansen,S. TITLE Structural characteristics and possible horizontal transfer of group I introns between closely related plant pathogenic fungi JOURNAL Mol. Biol. Evol. 16, 114-126 (1999) REFERENCE 2 (bases 1 to 348) AUTHORS Holst-Jensen,A. TITLE Direct Submission JOURNAL Submitted (23-FEB-1998) Holst-Jensen A., Division of Botany, Department of Biology, University of Oslo, P.O. Box 1045, Blindern 0316, Oslo, NORWAY FEATURES Location/Qualifiers source 1..348 /organism="Myriosclerotinia dennisii" /strain="453.2 on Eriophorum vaginatum" /db_xref="taxon:38444" rRNA <1..6 /gene="18S rRNA" /product="18S ribosomal RNA" gene 1..348 /gene="18S rRNA" intron 7..300 /gene="18S rRNA" /note="group-I intron" rRNA 301..>348 /gene="18S rRNA" /product="18S ribosomal RNA" BASE COUNT 111 a 64 c 75 g 98 t BASE COUNT 100 a 56 c 67 g 89 t 4245 others ORIGIN 1 |~~~~~~~ga cgaU||ua-- -------(-- --auc----- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- ---------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 ---------- ---ug|Gucg uc--|----- ---------- aa-|uaac-- ---------- 781 ---------- ---------- --------(a uu-------- ---------- ---------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 -------guu a|-------- -----|Guu- au-------- ---------- ---------- 1021 --(auu---- ---------- ---------- ---------u auu------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 ---------- ---------- ---------- ---------- ---------- ---------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- ---------- ---------- ---------- 1561 ---------- ---------- ---------- ---------- ---------- ---------- 1621 ---------- --a--uaaC| --AA|CACC- G-U-C|AAAU |UG--C-GGG |gaca----| 1681 U-CC------ ---------- ---------- -|uaaag--- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---gc|u-gu a|-------- ---------- ---------- -----cuacu 1861 cuc|cuu-u- ua-u-u---- -g----(gaa a--------- ---------- ---------- 1921 ---------- -)---c--ga --u-a-a-g- g-g|u---|u c-g-u----- (uaaaaugua 1981 cagu------ --------)- ---a-u--g- a|------uu ga--|agc-c uaaaaA-gc- 2041 uu--u-aa-| -gaaau---- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- --GGA|-caa -|UC-CGCA| GCC|-AAu-- 2221 |ucc------ ------(--- ---------- ---------- ---------- ---------- 2281 ---------- ----)|-|u| aac---|gcc u--------- ---------- ---------- 2341 (u-a-c---- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- -------|-- 2461 --------ag gcu|a|u|-- ---------- -gga|-ugc| cgu|--uca| CA-GACU-A| 2521 -GAC|GuC-G --G-UG|G|G GAGug----- ---------- -(gaauaaag ua-------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 --cacucuu- |uaa-ga-ua |UA-GUC|G| a|u------- -----|caua uauu------ 2761 ----(-gaaa ---------- )|-------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---------- ---------- 2881 --|-----gg ug--u-a-u- g|-------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---------- ---------- 3121 ---------- ---------- ---------- ---------- ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ---------- ---------- ---------- ---------- ---------- ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- ---------- 4021 ---------- ---------- ---------- ---------- ---------- ---------- 4081 ---------- ---------- ---------- ---------- ---------- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- ---------- ---------- ---------- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- --aguuuac- ---------- ------a|G- -||cag-aua ccgucg| // LOCUS Myr.s.1.1 4557 bp RNA RNA 20-JAN-1999 DEFINITION Myriosclerotinia scirpicola. str. 647.2. ACCESSION No information KEYWORDS No information. SOURCE Myriosclerotinia scirpicola. str. 647.2. ORGANISM Myriosclerotinia scirpicola. REFERENCE 1 (bases 1 to 375) AUTHORS Holst-Jensen,A., Vaage,M., Schumacher,T. and Johansen,S. TITLE Structural characteristics and possible horizontal transfer of group I introns between closely related plant pathogenic fungi JOURNAL Mol. Biol. Evol. 16, 114-126 (1999) STANDARD No information COMMENTS Sequence information (bases 1 to 4557) Corresponding GenBank entry: AJ226073 LOCUS MSCSSUINA 347 bp DNA PLN 20-JAN-1999 DEFINITION Myriosclerotinia scirpicola gene for 18S ribosomal RNA, strain 647.2. ACCESSION AJ226073 NID g4165575 KEYWORDS 18S rRNA; group I intron; small subunit ribosomal RNA. SOURCE Myriosclerotinia scirpicola. ORGANISM Myriosclerotinia scirpicola Eukaryota; Fungi; Ascomycota; Euascomycetes; Discomycetes; Leotiales; Sclerotiniaceae; Myriosclerotinia. REFERENCE 1 (bases 1 to 347) AUTHORS Holst-Jensen,A., Vaage,M., Schumacher,T. and Johansen,S. TITLE Structural characteristics and possible horizontal transfer of group I introns between closely related plant pathogenic fungi JOURNAL Mol. Biol. Evol. 16, 114-126 (1999) REFERENCE 2 (bases 1 to 347) AUTHORS Holst-Jensen,A. TITLE Direct Submission JOURNAL Submitted (23-FEB-1998) Holst-Jensen A., Division of Botany, Department of Biology, University of Oslo, P.O. Box 1045, Blindern 0316, Oslo, NORWAY FEATURES Location/Qualifiers source 1..347 /organism="Myriosclerotinia scirpicola" /strain="647.2 on Schoenoplectus maritimus" /db_xref="taxon:38443" rRNA <1..6 /gene="18S rRNA" /product="18S ribosomal RNA" gene 1..347 /gene="18S rRNA" intron 7..299 /gene="18S rRNA" /note="group-I intron" rRNA 300..>347 /gene="18S rRNA" /product="18S ribosomal RNA" BASE COUNT 109 a 66 c 77 g 95 t BASE COUNT 98 a 58 c 69 g 86 t 4246 others ORIGIN 1 |~~~~~~~ga cgaU||ua-- -------(-- --auc----- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- ---------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 ---------- ---ug|Gucg uc--|----- ---------- aa-|uaac-- ---------- 781 ---------- ---------- --------(a uu-------- ---------- ---------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 -------guu a|-------- -----|Guu- au-------- ---------- ---------- 1021 --(aua---- ---------- ---------- ---------u c--------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 ---------- ---------- ---------- ---------- ---------- ---------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- ---------- ---------- ---------- 1561 ---------- ---------- ---------- ---------- ---------- ---------- 1621 ---------- --g--ugaC| --AA|CACC- G-U-C|AAAU |UG--C-GGG |gaca----| 1681 U-CC------ ---------- ---------- -|uaaag--- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---gc|u-au a|-------- ---------- ---------- -----cuacu 1861 cuc|cuc-u- ua-u-u---- -g----(gaa a--------- ---------- ---------- 1921 ---------- -)---c--ga --u-a-g-g- g-g|u---|u c-g-u----- (uaaaaugua 1981 uagc------ --------)- ---a-u--g- a|------cu aa--|agu-c uaaaaA-gc- 2041 uu--u-au-| -gaaau---- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- --GGA|-caa -|UC-CGCA| GCC|-AAu-- 2221 |ucc------ ------(--- ---------- ---------- ---------- ---------- 2281 ---------- ----)|-|u| aac---|gcc u--------- ---------- ---------- 2341 (u-aua---- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- -------|-- 2461 --------ag gcu|a|u|-- ---------- -gga|-ugc| cgu|--uca| CA-GACU-A| 2521 -GAC|GuC-G --G-UG|G|G GAGug----- ---------- -(gaauaaag ua-------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 --cacucuu- |uaa-ga-ua |UA-GUC|G| a|u------- -----|cgca cauu------ 2761 ----(-gaaa ---------- )|-------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---------- ---------- 2881 --|-----ga ug--u-g-u- g|-------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---------- ---------- 3121 ---------- ---------- ---------- ---------- ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ---------- ---------- ---------- ---------- ---------- ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- ---------- 4021 ---------- ---------- ---------- ---------- ---------- ---------- 4081 ---------- ---------- ---------- ---------- ---------- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- ---------- ---------- ---------- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- --aguuuau- ---------- ------a|G- -||cag-aua ccgucg| // LOCUS Myr.s.2.1 4557 bp RNA RNA 20-JAN-1999 DEFINITION Myriosclerotinia scirpicola. str. 2023.1. ACCESSION No information KEYWORDS No information. SOURCE Myriosclerotinia scirpicola. str. 2023.1. ORGANISM Myriosclerotinia scirpicola. REFERENCE 1 (bases 1 to 375) AUTHORS Holst-Jensen,A., Vaage,M., Schumacher,T. and Johansen,S. TITLE Structural characteristics and possible horizontal transfer of group I introns between closely related plant pathogenic fungi JOURNAL Mol. Biol. Evol. 16, 114-126 (1999) STANDARD No information COMMENTS Sequence information (bases 1 to 4557) Corresponding GenBank entry: AJ226074 LOCUS MSCSSUINC 347 bp DNA PLN 20-JAN-1999 DEFINITION Myriosclerotinia scirpicola gene for 18S ribosomal RNA, strain 2023.1. ACCESSION AJ226074 NID g4165576 KEYWORDS 18S rRNA; group I intron; small subunit ribosomal RNA. SOURCE Myriosclerotinia scirpicola. ORGANISM Myriosclerotinia scirpicola Eukaryota; Fungi; Ascomycota; Euascomycetes; Discomycetes; Leotiales; Sclerotiniaceae; Myriosclerotinia. REFERENCE 1 (bases 1 to 347) AUTHORS Holst-Jensen,A., Vaage,M., Schumacher,T. and Johansen,S. TITLE Structural characteristics and possible horizontal transfer of group I introns between closely related plant pathogenic fungi JOURNAL Mol. Biol. Evol. 16, 114-126 (1999) REFERENCE 2 (bases 1 to 347) AUTHORS Holst-Jensen,A. TITLE Direct Submission JOURNAL Submitted (23-FEB-1998) Holst-Jensen A., Division of Botany, Department of Biology, University of Oslo, P.O. Box 1045, Blindern 0316, Oslo, NORWAY FEATURES Location/Qualifiers source 1..347 /organism="Myriosclerotinia scirpicola" /strain="2023.1 on Schoenoplectus lacustris" /db_xref="taxon:38443" rRNA <1..6 /gene="18S rRNA" /product="18S ribosomal RNA" gene 1..347 /gene="18S rRNA" intron 7..299 /gene="18S rRNA" /note="group-I intron" rRNA 300..>347 /gene="18S rRNA" /product="18S ribosomal RNA" BASE COUNT 109 a 66 c 77 g 95 t BASE COUNT 98 a 58 c 69 g 86 t 4246 others ORIGIN 1 |~~~~~~~ga cgaU||ua-- -------(-- --auc----- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- ---------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 ---------- ---ug|Gucg uc--|----- ---------- aa-|uaac-- ---------- 781 ---------- ---------- --------(a uu-------- ---------- ---------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 -------guu a|-------- -----|Guu- au-------- ---------- ---------- 1021 --(aua---- ---------- ---------- ---------u c--------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 ---------- ---------- ---------- ---------- ---------- ---------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- ---------- ---------- ---------- 1561 ---------- ---------- ---------- ---------- ---------- ---------- 1621 ---------- --g--ugaC| --AA|CACC- G-U-C|AAAU |UG--C-GGG |gaca----| 1681 U-CC------ ---------- ---------- -|uaaag--- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---gc|u-au a|-------- ---------- ---------- -----cuacu 1861 cuc|cuc-u- ua-u-u---- -g----(gaa a--------- ---------- ---------- 1921 ---------- -)---c--ga --u-a-g-g- g-g|u---|u c-g-u----- (uaaaaugua 1981 uagc------ --------)- ---a-u--g- a|------cu aa--|agu-c uaaaaA-gc- 2041 uu--u-au-| -gaaau---- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- --GGA|-caa -|UC-CGCA| GCC|-AAu-- 2221 |ucc------ ------(--- ---------- ---------- ---------- ---------- 2281 ---------- ----)|-|u| aac---|gcc u--------- ---------- ---------- 2341 (u-aua---- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- -------|-- 2461 --------ag gcu|a|u|-- ---------- -gga|-ugc| cgu|--uca| CA-GACU-A| 2521 -GAC|GuC-G --G-UG|G|G GAGug----- ---------- -(gaauaaag ua-------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 --cacucuu- |uaa-ga-ua |UA-GUC|G| a|u------- -----|cgca cauu------ 2761 ----(-gaaa ---------- )|-------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---------- ---------- 2881 --|-----ga ug--u-g-u- g|-------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---------- ---------- 3121 ---------- ---------- ---------- ---------- ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ---------- ---------- ---------- ---------- ---------- ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- ---------- 4021 ---------- ---------- ---------- ---------- ---------- ---------- 4081 ---------- ---------- ---------- ---------- ---------- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- ---------- ---------- ---------- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- --aguuuau- ---------- ------a|G- -||cag-aua ccgucg| // LOCUS Myr.s.3.1 4557 bp RNA RNA 20-JAN-1999 DEFINITION Myriosclerotinia scirpicola. str. 2026.1. ACCESSION No information KEYWORDS No information. SOURCE Myriosclerotinia scirpicola. str. 2026.1. ORGANISM Myriosclerotinia scirpicola. REFERENCE 1 (bases 1 to 375) AUTHORS Holst-Jensen,A., Vaage,M., Schumacher,T. and Johansen,S. TITLE fungi Structural characteristics and possible horizontal transfer of group I introns between closely related plant pathogenic JOURNAL Mol. Biol. Evol. 16, 114-126 (1999) STANDARD No information COMMENTS Sequence information (bases 1 to 4557) Corresponding GenBank entry: AJ226075 LOCUS MSCSSUIND 347 bp DNA PLN 20-JAN-1999 DEFINITION Myriosclerotinia scirpicola gene for 18S ribosomal RNA, strain 2026.1. ACCESSION AJ226075 NID g4165577 KEYWORDS 18S rRNA; group I intron; small subunit ribosomal RNA. SOURCE Myriosclerotinia scirpicola. ORGANISM Myriosclerotinia scirpicola Eukaryota; Fungi; Ascomycota; Euascomycetes; Discomycetes; Leotiales; Sclerotiniaceae; Myriosclerotinia. REFERENCE 1 (bases 1 to 347) AUTHORS Holst-Jensen,A., Vaage,M., Schumacher,T. and Johansen,S. TITLE Structural characteristics and possible horizontal transfer of group I introns between closely related plant pathogenic fungi JOURNAL Mol. Biol. Evol. 16, 114-126 (1999) REFERENCE 2 (bases 1 to 347) AUTHORS Holst-Jensen,A. TITLE Direct Submission JOURNAL Submitted (23-FEB-1998) Holst-Jensen A., Division of Botany, Department of Biology, University of Oslo, P.O. Box 1045, Blindern 0316, Oslo, NORWAY FEATURES Location/Qualifiers source 1..347 /organism="Myriosclerotinia scirpicola" /strain="2026.1 on Schoenoplectus maritimus" /db_xref="taxon:38443" rRNA <1..6 /gene="18S rRNA" /product="18S ribosomal RNA" gene 1..347 /gene="18S rRNA" intron 7..299 /gene="18S rRNA" /note="group-I intron" rRNA 300..>347 /gene="18S rRNA" /product="18S ribosomal RNA" BASE COUNT 107 a 66 c 77 g 95 t 2 others BASE COUNT 96 a 58 c 69 g 86 t 4248 others ORIGIN 1 |~~~~~~~ga cgaU||ua-- -------(-- --auc----- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- ---------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 ---------- ---ug|Gucg uc--|----- ---------- aa-|uaac-- ---------- 781 ---------- ---------- --------(a uu-------- ---------- ---------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 -------guu a|-------- -----|Guu- au-------- ---------- ---------- 1021 --(aua---- ---------- ---------- ---------u c--------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 ---------- ---------- ---------- ---------- ---------- ---------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- ---------- ---------- ---------- 1561 ---------- ---------- ---------- ---------- ---------- ---------- 1621 ---------- --g--ugaC| --AA|CACC- G-U-C|AAAU |UG--C-GGG |gaca----| 1681 U-CC------ ---------- ---------- -|uaaag--- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---gc|u-au a|-------- ---------- ---------- -----cuacu 1861 cuc|cuc-u- ua-u-u---- -g----(gaa a--------- ---------- ---------- 1921 ---------- -)---c--ga --u-a-g-g- g-g|u---|u c-g-u----- (uaaaaugua 1981 uagc------ --------)- ---a-u--g- a|------cu aa--|agu-c uaaaaA-gc- 2041 uu--u-au-| -gnnau---- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- --GGA|-caa -|UC-CGCA| GCC|-AAu-- 2221 |ucc------ ------(--- ---------- ---------- ---------- ---------- 2281 ---------- ----)|-|u| aac---|gcc u--------- ---------- ---------- 2341 (u-aua---- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- -------|-- 2461 --------ag gcu|a|u|-- ---------- -gga|-ugc| cgu|--uca| CA-GACU-A| 2521 -GAC|GuC-G --G-UG|G|G GAGug----- ---------- -(gaauaaag ua-------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 --cacucuu- |uaa-ga-ua |UA-GUC|G| a|u------- -----|cgca cauu------ 2761 ----(-gaaa ---------- )|-------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---------- ---------- 2881 --|-----ga ug--u-g-u- g|-------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---------- ---------- 3121 ---------- ---------- ---------- ---------- ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ---------- ---------- ---------- ---------- ---------- ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- ---------- 4021 ---------- ---------- ---------- ---------- ---------- ---------- 4081 ---------- ---------- ---------- ---------- ---------- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- ---------- ---------- ---------- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- --aguuuau- ---------- ------a|G- -||cag-aua ccgucg| // LOCUS Myr.s.4.1 4557 bp RNA RNA 20-JAN-1999 DEFINITION Myriosclerotinia scirpicola. str. 2029.1. ACCESSION No information KEYWORDS No information. SOURCE Myriosclerotinia scirpicola. str. 2029.1. ORGANISM Myriosclerotinia scirpicola. REFERENCE 1 (bases 1 to 375) AUTHORS Holst-Jensen,A., Vaage,M., Schumacher,T. and Johansen,S. TITLE fungi Structural characteristics and possible horizontal transfer of group I introns between closely related plant pathogenic JOURNAL Mol. Biol. Evol. 16, 114-126 (1999) STANDARD No information COMMENTS Sequence information (bases 1 to 4557) Corresponding GenBank entry: AJ226076 LOCUS MSCSSUINE 347 bp DNA PLN 20-JAN-1999 DEFINITION Myriosclerotinia scirpicola gene for 18S ribosomal RNA, strain 2029.1. ACCESSION AJ226076 NID g4165578 KEYWORDS 18S rRNA; group I intron; small subunit ribosomal RNA. SOURCE Myriosclerotinia scirpicola. ORGANISM Myriosclerotinia scirpicola Eukaryota; Fungi; Ascomycota; Euascomycetes; Discomycetes; Leotiales; Sclerotiniaceae; Myriosclerotinia. REFERENCE 1 (bases 1 to 347) AUTHORS Holst-Jensen,A., Vaage,M., Schumacher,T. and Johansen,S. TITLE Structural characteristics and possible horizontal transfer of group I introns between closely related plant pathogenic fungi JOURNAL Mol. Biol. Evol. 16, 114-126 (1999) REFERENCE 2 (bases 1 to 347) AUTHORS Holst-Jensen,A. TITLE Direct Submission JOURNAL Submitted (23-FEB-1998) Holst-Jensen A., Division of Botany, Department of Biology, University of Oslo, P.O. Box 1045, Blindern 0316, Oslo, NORWAY FEATURES Location/Qualifiers source 1..347 /organism="Myriosclerotinia scirpicola" /strain="2029.1 on Scirpus sylvaticus" /db_xref="taxon:38443" rRNA <1..6 /gene="18S rRNA" /product="18S ribosomal RNA" gene 1..347 /gene="18S rRNA" intron 7..299 /gene="18S rRNA" /note="group-I intron" rRNA 300..>347 /gene="18S rRNA" /product="18S ribosomal RNA" BASE COUNT 110 a 66 c 76 g 95 t BASE COUNT 99 a 58 c 68 g 86 t 4246 others ORIGIN 1 |~~~~~~~ga cgaU||ua-- -------(-- --auc----- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- ---------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 ---------- ---ug|Gucg uc--|----- ---------- aa-|uaac-- ---------- 781 ---------- ---------- --------(a uu-------- ---------- ---------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 -------guu a|-------- -----|Guu- au-------- ---------- ---------- 1021 --(aua---- ---------- ---------- ---------u c--------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 ---------- ---------- ---------- ---------- ---------- ---------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- ---------- ---------- ---------- 1561 ---------- ---------- ---------- ---------- ---------- ---------- 1621 ---------- --g--uaaC| --AA|CACC- G-U-C|AAAU |UG--C-GGG |gaca----| 1681 U-CC------ ---------- ---------- -|uaaag--- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---gc|u-au a|-------- ---------- ---------- -----cuacu 1861 cuc|cuc-u- ua-u-u---- -g----(gaa a--------- ---------- ---------- 1921 ---------- -)---c--ga --u-a-g-g- g-g|u---|u c-g-u----- (uaaaaugua 1981 uagc------ --------)- ---a-u--g- a|------cu aa--|agu-c uaaaaA-gc- 2041 uu--u-au-| -gaaau---- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- --GGA|-caa -|UC-CGCA| GCC|-AAu-- 2221 |ucc------ ------(--- ---------- ---------- ---------- ---------- 2281 ---------- ----)|-|u| aac---|gcc u--------- ---------- ---------- 2341 (u-aua---- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- -------|-- 2461 --------ag gcu|a|u|-- ---------- -gga|-ugc| cgu|--uca| CA-GACU-A| 2521 -GAC|GuC-G --G-UG|G|G GAGug----- ---------- -(gaauaaag ua-------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 --cacucuu- |uaa-ga-ua |UA-GUC|G| a|u------- -----|cgca cauu------ 2761 ----(-gaaa ---------- )|-------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---------- ---------- 2881 --|-----ga ug--u-g-u- g|-------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---------- ---------- 3121 ---------- ---------- ---------- ---------- ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ---------- ---------- ---------- ---------- ---------- ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- ---------- 4021 ---------- ---------- ---------- ---------- ---------- ---------- 4081 ---------- ---------- ---------- ---------- ---------- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- ---------- ---------- ---------- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- --aguuuau- ---------- ------a|G- -||cag-aua ccgucg| // LOCUS C1-S-943 4557 bp RNA RNA ~?~???? DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 4557) Corresponding GenBank entry: DIVIDER BASE COUNT 0 a 0 c 0 g 0 t 4557 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- --------|- ---------- ---------- ---------- ---------- 301 ---------- ---------- -----|--|- ---------| |||||||||| |||~|..... 361 .......... .......... .......... .......... .......... .......... 421 .......... .......... .......... .......... .......... .......... 481 .......... .......... .......... .......... .......... .......... 541 .......... .......... .......... .......... .......... .......... 601 .......... .......... .......... .......... .......... .......... 661 .......... .......... .......... .......... .......... .......... 721 .......... .......... ....|..... .......... ..-....... .......... 781 .......... .......... .......... .......... .......... .......... 841 .......... .......... .......... .......... .......... .......... 901 .......... .......... .......... .......... .......... .......... 961 .......... ..--...... .......... .......... .......... .......... 1021 .......... .......... .......... .......... .......... .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .......... .......... .......... .......... .......... 1201 .......... .......... .......... .......... .......... .......... 1261 .......... .......... .......... .......... .......... .......... 1321 .......... .......... .......... .......... .......... .......... 1381 .......... .......... .......... .......... .......... .......... 1441 .......... .......... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... .......... .......... .......... .......... .......... 1621 .......... .......... .......... .......... ......-... ......---. 1681 ....------ ---------- ---------- -......... .......... .......... 1741 .......... .......... .......... .......... .......... .......... 1801 .......... .......... ...------- ---------- ---------- ---------- 1861 ---....... .......... .......... .......... .......... .......... 1921 .......... .......... .......... .......... .......-.. .......... 1981 .......... .......... .......... .|........ .......... .......... 2041 .......... -......... .......... .......... .......... .......... 2101 .......... ....-..... .......... .......... .......... .......... 2161 .......... .......... .......... .......... .......... ....-..... 2221 .......... ....--(... .......... .......... .......... .......... 2281 .......... ....)|.|.| .......... .......... .......... .......... 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......-.. .......|.- -......... .......... .......... .......... 2521 ........-. ...-...... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... -......... 2701 .........- .......... .......... .......... .......... .......... 2761 .......... .......--- .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... .......... 2881 .......... ..--...... .......... .......... .......... .......... 2941 .......... .......... .......... .......... .......... .......... 3001 .......... .......... .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .....--... 3121 .......... .......... .......... .......... .......... .......... 3181 .......... .......... .......... .......... .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .......... .......... .......... 3361 .......... .......... .......... .......... .......... .......... 3421 .......... .......... .......... .......... .......... .......... 3481 .......... .......... .......... .......... .......... .......... 3541 .......... .......... .......... .......... .......... .......... 3601 .......... .......... .......... .......... .......... .......... 3661 .......... .......... .......... .......... .......... .......... 3721 .......... .......... .......... .......... .......... .......... 3781 .......... .......... .......... .......... .......... .......... 3841 .......... .......... .......... .......... .......... .......... 3901 .......... .......... .......... .......... .......... .......... 3961 .......... .......... .......... .--....... .......... ...---.... 4021 ....---... .......... .......... .....----- ---------- ---------. 4081 .......... .......... .......... .......... .......... .......... 4141 .......... .......... .......... .......... .......... .......... 4201 .......... .......... .......... .......... .......... .......... 4261 .......... .......... .......... .......... .......... ......---- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 --------.. --........ .......... .........- -.....-... ......| // LOCUS Dun.b.1.1 4557 bp RNA RNA 07-JUN-1999 DEFINITION Dunaliella bardawil.. ACCESSION No information KEYWORDS No information. SOURCE Dunaliella bardawil. ORGANISM Dunaliella bardawil. REFERENCE 1 (bases 1 to 375) AUTHORS Olmos,J., Paniagua,M.J. and Contreras,F.R. TITLE Molecular Identification of Dunaliella bardawil utilizing the 18S rDNA gene JOURNAL Unpublished STANDARD No information COMMENTS Sequence information (bases 1 to 4557) Corresponding GenBank entry: AF150905 LOCUS AF150905 2584 bp DNA PLN 07-JUN-1999 DEFINITION Dunaliella bardawil 18S ribosomal RNA gene, complete sequence. ACCESSION AF150905 NID g5002366 VERSION AF150905.1 GI:5002366 KEYWORDS . SOURCE Dunaliella bardawil. ORGANISM Dunaliella bardawil Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Volvocales; Dunaliellaceae; Dunaliella. REFERENCE 1 (bases 1 to 2584) AUTHORS Olmos,J., Paniagua,M.J. and Contreras,F.R. TITLE Molecular Identification of Dunaliella bardawil utilizing the 18S rDNA gene JOURNAL Unpublished REFERENCE 2 (bases 1 to 2584) AUTHORS Olmos,J., Paniagua,M.J. and Contreras,F.R. TITLE Direct Submission JOURNAL Submitted (12-MAY-1999) Marine Biotechnology Area, C.I.C.E.S.E., Km 107 carretera Tijuana-Ensenada, Ensenada, B.C. 22860, Mexico FEATURES Location/Qualifiers source 1..2584 /organism="Dunaliella bardawil" /strain="DB1" /db_xref="taxon:3045" rRNA 1..2584 /product="18S ribosomal RNA" BASE COUNT 664 a 560 c 723 g 637 t BASE COUNT 121 a 98 c 124 g 85 t 4129 others ORIGIN 1 |caccaccag gcgU||u--- -------(-- --aa---caa aagcagaag- --cuc----- 61 ---------- ---------- --)------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- ---------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 -------|-- ----a|Gcgc cu--|----- ---------a ag-|AGUCga ugg------- 781 ---------- ---------- --------(G AAA------- ---------- ---------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ----cca-u- 961 ----U--GGC U|--A----- -----|GUG- CU-------- ug-ggu---- -----gugu- 1021 --(gug---- ---------- ---------- ---------u uacaca---- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 ---------- ---------- ---------- ---------- ---------- ---------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- ---------- -)-------- --a-ca---- 1561 ---------- ---------- ---------- ---------- ---------- ---------- 1621 ----cacucg --A--GUGC| --AA|CACU- GuU-C|AAAC |UG--C-GGG |GAAG----| 1681 C-CC------ ---------- ---------- -|U------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- --------AA AG|------C 1801 UU-------- UG-CU|A-AC C|-------- ---------- ---------- ---------- 1861 ---|AAG-C- UG-A-G---- -U-GU-(GAA A--------- ---------- ---------- 1921 ---------- -)-GCA--CU --C-A-G-U- G-G|----|C C-G-G-G-U- (uaaag---- 1981 ---------- --------)- AC-C-U-CG- G|-------G UA-U|GGU-A AAA-UC-AG- 2041 CA--A-AG-| -A-------- ------|ug- ---------- ---------- --(ca-a--- 2101 ----)----- ---------- -ca|-----a u|-------- ---------- ---------- 2161 ---------- ---------- ---------- --GGG|-CAA -|UC-CGCA| GCC|-AAG-- 2221 |CUCC----- ------(--- ---------- ---------- ---------- ---------- 2281 ---------- ----)|-|U| UC----|agc ca-------- ---------- ---------- 2341 (c-uua---- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- -------|-- 2461 --------gg ca-|A|U|-- ---------- GGAG|--AA| GGU|--UCA| GA-GACU-A| 2521 -AAU|GGC-A --G-UG|G|G CCAA------ ---------- -(cuug---- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---UUGGCU- |UAA-GA-UA |UA-GUC|C| -|GU-----| cc---|cagc u--------- 2761 ----(-GAAA ---------- )|-------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---------- ---------- 2881 --|------- -g--g-c-u- g|-------- --|-ucugcu ag-------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- -|----agga ---|agacc- ----(--auu 3121 cga------- ---------- ---------- ---------- ---------- ---------- 3181 ---------- ---------- -----)---- g-gucu|--- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ---------- ---------- ---------- ---------- ---------- ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- --|--gaga- g--|------ ---------- --c---uagc 4021 aga|------ --------|g ggua-ggagg gag------- ---------- ---------( 4081 ucuu------ ---------- ---------- ---------- ---------- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- --------|- --uuuccacc u-accu|--- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------| ----ggagga a--------| -----AC|G- -||gga-gcc ugcggc| // LOCUS Dun.p.1.1 4557 bp RNA RNA 28-JAN-191 DEFINITION Dunaliella parva. ACCESSION No information KEYWORDS No information. SOURCE Dunaliella parva. ORGANISM Dunaliella parva. REFERENCE 1 (bases 1 to 375) AUTHORS Wilcox,L.W., Lewis,L.A., Fuerst,P.A. and Floyd,G.L. TITLE Group I introns within the nuclear-encoded small-subunit rRNA... JOURNAL Mol. Biol. Evol. 9, 1103-1118 (1992) STANDARD No information COMMENTS Sequence information (bases 1 to 4557) Corresponding GenBank entry: M62998 intron 1160..1540 /number=1 BASE COUNT 118 a 84 c 111 g 83 t 4161 others ORIGIN 1 |~~~~accag gcgU||u--- -------(-- --aaaa--ag ca-------- gacuc----- 61 ---------- ---------- --)------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- ---------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 -------|-- ----a|Gcgc cu--|----- ---------a ag-|AGUCAg ugg------- 781 ---------- ---------- --------(G AAA------- ---------- ---------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ----cca-u- 961 ----U--GGC U|--A----- -----|GUG- CU-------- ug-ggu---- ---------- 1021 --(uuc---- ---------- ---------- ---------a uu-------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 ---------- ---------- ---------- ---------- ---------- ---------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- ---------- -)-------- ---------- 1561 ---------- ---------- ---------- ---------- ---------- ---------- 1621 -----acuca --A--GUGC| --AA|CACU- GaU-C|AAAU |UG--C-GGG |AAAG----| 1681 C-CC------ ---------- ---------- -|U------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- --------AA AG|------C 1801 UU-------- UG-CU|A-AC C|-------- ---------- ---------- ---------- 1861 ---|AAG-C- UA-A-G---- -U-GU-(GAA A--------- ---------- ---------- 1921 ---------- -)-GCA--CU --C-A-G-U- G-G|----|C C-G-G-G-U- (uaaag---- 1981 ---------- --------)- AC-C-U-CG- G|-------G UA-U|GGU-A AAA-UC-AG- 2041 CA--A-AG-| -A-------- ------|ug- ---------- ---------- --(ca-a--- 2101 ----)----- ---------- -ca|-----a u|-------- ---------- ---------- 2161 ---------- ---------- ---------- --GGG|-CAA -|UC-CGCA| GCC|-AAg-- 2221 |CUCC----- ------(--- ---------- ---------- ---------- ---------- 2281 ---------- ----)|-|U| GA----|agc cu-------- ---------- ---------- 2341 (u-au----- ---------- ---------- ---------- ---------- ---------- 2401 -------)-- ---------- ---------- ---------- ---------- -------|-- 2461 ------a-gg ca-|A|U|-- ---------- GGAG|--AA| GGU|--UCA| GA-GACU-A| 2521 -AAU|GGC-A --G-UG|G|G CCaa------ ---------- -(cuug---- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------) ---------- 2701 ---uuGGCU- |UAA-GA-UA |UA-GUC|C| -|GU-----| cc---|cagc u--------- 2761 ----(-GAAA ---------- )--------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---------- ---------- 2881 --|------- -g--g-c-u- g|-------- --|-ucugcu ag-------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- -|----agga ---|agacc- u---(--uuc 3121 u--------- ---------- ---------- ---------- ---------- ---------- 3181 ---------- ---------- -----)---a g-gucu|--- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ---------- ---------- ---------- ---------- ---------- ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- --|--gaga- g--|------ ---------- --c---uagu 4021 aga|------ --------|g ggua-ggaga ---------- ---------- ---------( 4081 aguc------ ---------- ---------- ---------- ---------- ---------- 4141 -)-------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- --------|- -----ucucc u-accu|--- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------| ----ggagga a--------| -----AC|G- -||gga-gcc ~~~~~~| // LOCUS Sco.t.1.1 4557 bp RNA RNA 09-OCT-1998 DEFINITION Scotiellopsis terrestris.. ACCESSION No information KEYWORDS No information. SOURCE Scotiellopsis terrestris. ORGANISM Scotiellopsis terrestris. REFERENCE 1 (bases 1 to 375) AUTHORS Hanagata,N. TITLE Phylogeney of the subfamily Scotiellocysoideae (Chlorophyceae, Chlorophyta) and related taxa inferred from 18S rDNA sequence data JOURNAL Unpublished (1998) STANDARD No information COMMENTS Sequence information (bases 1 to 4557) Corresponding GenBank entry: AB012847 LOCUS AB012847 2278 bp DNA PLN 09-OCT-1998 DEFINITION Scotiellopsis terrestris gene for 18S rRNA. ACCESSION AB012847 NID g3721583 KEYWORDS 18S rRNA. SOURCE Scotiellopsis terrestris (strain:CCAP-279-1) DNA. ORGANISM Scotiellopsis terrestris Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Chlorococcales; Scenedesmaceae; Scotiellopsis. REFERENCE 1 (sites) AUTHORS Hanagata,N. TITLE Phylogeney of the subfamily Scotiellocysoideae (Chlorophyceae, Chlorophyta) and related taxa inferred from 18S rDNA sequence data JOURNAL Unpublished (1998) REFERENCE 2 (bases 1 to 2278) AUTHORS Hanagata,N. TITLE Direct Submission JOURNAL Submitted (07-APR-1998) to the DDBJ/EMBL/GenBank databases. Nobutaka Hanagata, The University of Tokyo, Research Center of Advanced Science and Technology; 4-6-1 Komaba, Meguro-ku, Tokyo 153-8904, Japan (E-mail:hanagata@bio.rcast.u-tokyo.ac.jp, Tel:81-3-3481-4094, Fax:81-3-3481-4094) FEATURES Location/Qualifiers source 1..2278 /organism="Scotiellopsis terrestris" /strain="CCAP-279-1" /db_xref="taxon:75803" rRNA join(1..1166,1654..2278) /product="18S rRNA" intron 1167..1653 /note="Group I intron" BASE COUNT 595 a 487 c 598 g 587 t 11 others BASE COUNT 143 a 125 c 125 g 108 t 4056 others ORIGIN 1 |caccaccag gcgU||uaa- -------(-- ---uaauagc u--gcuc--- agcu------ 61 ---------- ---------- --)------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- ---------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 -------|-- --uua|Gcgc c---|----- ---------- ---|AGUGGc uug------- 781 ---------- ---------- --------(g aaa------- ---------- ---------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ----caa-g- 961 ----C--UGC U|--A----- -----|GUC- AC-------- ac-u-ac--- -----ca-uc 1021 u-(cua---- ---------- ---------- ---------g gcaagacagc cugc------ 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 ---------- ---------- ---------- ---------- ---------- ---------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- ---------- -)-------- --a-gu---- 1561 ---------- ---------- ---------- ---------- ---------- ---------- 1621 ----augg-a c-G--UGGC| --AA|CACC- C-U-C|AAAU |UG--C-UGG |GAAG----| 1681 C-CC------ ---------- ---------- -|U------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- --------AA AG|-----CU 1801 GC-------- UA-CA|U-AC C|-------- ---------- ---------- ---------- 1861 ---|AAA-G- CU-U-G---- -U-UG-(GAA A--------- ---------- ---------- 1921 ---------- -)-CAA--CU --A-G-C-U- G-G|----|C C-A-G-G-UU (-aau----- 1981 ---------- --------)A AC-C-U-CG- G|-------G UA-U|GGU-G ACA-AC-UG- 2041 UA--G-CAN| -Auga----- ------|agc aug------- ---------- --(cuca--- 2101 ----)----- -------cau gcu|--gaaa u|-------- ---------- ---------- 2161 ---------- ---------- ---------- --GGG|-UAA -|UC-AGCA| NCC|-AA--- 2221 |GUCC----- ------(--- ---------- ---------- ---------- ---------- 2281 ---------- ----)|-|U| AA----|acg -ugcucggug ugcu------ ---------- 2341 -u-aac---- ---ac----- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ----agcuuc 2461 accaagu-gu gc-|A|U|-- ---------- GGAU|--GC| AGU|--UCA| CA-GACU-A| 2521 -AAU|GGG-G --G-UG|G|G ucaucuag-- ---------- -(uucaacag aacau----- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------c 2701 ucgauGGCU- |UAA-GA-UA |UA-GUC|C| -|GC-----| cu---|guac c--------- 2761 ----(-GAAA ---------- )--------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---------- ---------- 2881 ---------- -n--g-u-a- c|-------- --|-ccggca gg-------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- -|----anga ag-|uuuca- ----(--auc 3121 aaaa------ ---------- ---------- ---------- ---------- ---------- 3181 ---------- ---------- -----)---- u-gaaa|--- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ---------- ---------- ---------- ---------- ---------- ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- --|uggana- n--|------ ---------- --c---cugu 4021 cng|------ --------|a cnuc------ ---------- ---------- ---------- 4081 ----cau--- -gnuccacca cgguggagcc agugccuac- ---------- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- ---------- ---------- g-angu|--- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---agauuuc a--------| -----GC|g- -||gga-gcc ugcggc| // LOCUS Coe.m.2.2 4557 bp RNA RNA 28-JAN-191 DEFINITION Coelastrella multistriata var. corcontica. ACCESSION No information KEYWORDS No information. SOURCE Coelastrella multistriata var. corcontica. ORGANISM Coelastrella multistriata var. corcontica. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 4557) Corresponding GenBank entry: AB037082 LOCUS AB037082 2710 bp DNA PLN 18-JUL-2000 DEFINITION Coelastrella multistriata var. corcontica gene for 18S rRNA, complete sequence. ACCESSION AB037082 VERSION AB037082.1 GI:9279814 KEYWORDS 18S ribosomal RNA. SOURCE Coelastrella multistriata var. corcontica (strain:Kalina 1967/9, variety:corcontica) DNA. ORGANISM Coelastrella multistriata var. corcontica Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Chlorococcales; Scenedesmaceae; Coelastrella. REFERENCE 1 (sites) AUTHORS Hegewald,E. and Hanagata,N. TITLE Phylogenetic studies on Scenedesmaceae JOURNAL Unpublished (2000) REFERENCE 2 (bases 1 to 2710) AUTHORS Hanagata,N. TITLE Direct Submission JOURNAL Submitted (14-JAN-2000) to the DDBJ/EMBL/GenBank databases. Nobutaka Hanagata, The University of Tokyo, Research Center for Advanced Science and Technology; 4-6-1 Komaba, Meguro-ku, Tokyo 153-8904, Japan (E-mail:hanagata@bio.rcast.u-tokyo.ac.jp, Tel:81-3-5452-5320, Fax:81-3-5452-5320) FEATURES Location/Qualifiers source 1..2710 /organism="Coelastrella multistriata var. corcontica" /strain="Kalina 1967/9" /variety="corcontica" /db_xref="taxon:113518" rRNA 1..2710 /product="18S rRNA" BASE COUNT 717 a 578 c 732 g 683 t BASE COUNT 165 a 122 c 145 g 117 t 4008 others ORIGIN 1 |caccaccag gcgU||uaa- -------(-- ---uaauagc u--gcuc--- agcu------ 61 ---------- ---------- --)------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- ---------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 -------|-- --uua|Gcgc c---|----- ---------- ---|AGUGGc uug------- 781 ---------- ---------- --------(g aaa------- ---------- ---------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ----caa-g- 961 ----C--UGC U|--A----- -----|GUC- AC-------- ac-u-ac--- -----ua-ac 1021 u--gag---- ---------- ---------- ---------g gucgaaggcc u--------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 ---------- ---------- ---------- ---------- ---------- ---------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- ---------- ---------- -ga-ag---- 1561 ---------- ---------- ---------- ---------- ---------- ---------- 1621 ----uaaacg u-G--UGGC| --AA|CAUC- C-U-C|AAAU |UG--C-UGG |GAAG----| 1681 C-CC------ ---------- ---------- -|U------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- --------AA AG|-----CU 1801 GC-------- UA-CA|U-AC C|-------- ---------- ---------- ---------- 1861 ---|AAA-G- CU-U-G---- -C-UG-(GAA A--------- ---------- ---------- 1921 ---------- -)-CAG--CU --A-G-C-U- G-G|----|C C-A-G-G-UU (-aau----- 1981 ---------- --------)A AC-C-U-CG- G|-------G UA-U|GGU-G AUA-AC-UG- 2041 UG--G-CAG| -auga----- ------|agc aug------- ---------- --(cuca--- 2101 ----)----- -------cau gcu|--gaaa u|-------- ---------- ---------- 2161 ---------- ---------- ---------- --GGG|-UAA -|UC-AGCA| GCC|-AA--- 2221 |GUCC----- ------(--- ---------- ---------- ---------- ---------- 2281 ---------- ----)|-|U| AA----|aca -ugcucagug auacugauaa ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- --uucaaaac 2461 acuaagu-au gc-|A|U|-- ---------- GGAU|--GC| AGU|--UCA| CA-GACU-A| 2521 -AAU|GGG-G --G-UG|G|G ucauc----- ---------- -(uaagucac agaaacguga 2581 uuaaaau--- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 --gauGGCU- |UAA-GA-UA |UA-GUC|G| -|GC-----| cu---|guac c--------- 2761 ----(-GAGA ---------- )--------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---------- ---------- 2881 ---------- -g--g-u-a- c|-------- --|-ccgaca gg-------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- -|----agga aa-|uucca- ----(--ugu 3121 aacu------ ---------- ---------- ---------- ---------- ---------- 3181 ---------- ---------- -----)---- c-ggaa|--- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ---------- ---------- ---------- ---------- ---------- ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- --|uggaga- g--|------ ---------- --c---cugu 4021 cgg|------ --------|a cguc-gug-- ---------- ---------- ---------- 4081 -uaauacugu cuaga(guaa )ucuagccag ggcaagcucc ac(cacg)gu ggagcuacag 4141 cc-------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- ---------- -------uac g-acgu|--- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ----agaaua a--------| -----GC|G- -||gga-cgc ugcggc| // LOCUS Pse.p.1.3 4557 bp RNA RNA 28-JAN-191 DEFINITION Pseudodidymocystis planctonica. ACCESSION No information KEYWORDS No information. SOURCE Pseudodidymocystis planctonica. ORGANISM Pseudodidymocystis planctonica. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 4557) Corresponding GenBank entry: AB037087 LOCUS AB037087 3335 bp DNA PLN 18-JUL-2000 DEFINITION Pseudodidymocystis planctonica gene for 18S rRNA, complete sequence. ACCESSION AB037087 VERSION AB037087.1 GI:9279819 KEYWORDS 18S ribosomal RNA. SOURCE Pseudodidymocystis planctonica (strain:SAG 40.98) DNA. ORGANISM Pseudodidymocystis planctonica Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Chlorococcales; Scenedesmaceae; Pseudodidymocystis. REFERENCE 1 (sites) AUTHORS Hegewald,E. and Hanagata,N. TITLE Phylogenetic studies on Scenedesmaceae JOURNAL Unpublished (2000) REFERENCE 2 (bases 1 to 3335) AUTHORS Hanagata,N. TITLE Direct Submission JOURNAL Submitted (14-JAN-2000) to the DDBJ/EMBL/GenBank databases. Nobutaka Hanagata, The University of Tokyo, Research Center for Advanced Science and Technology; 4-6-1 Komaba, Meguro-ku, Tokyo 153-8904, Japan (E-mail:hanagata@bio.rcast.u-tokyo.ac.jp, Tel:81-3-5452-5320, Fax:81-3-5452-5320) FEATURES Location/Qualifiers source 1..3335 /organism="Pseudodidymocystis planctonica" /strain="SAG 40.98" /db_xref="taxon:113526" rRNA 1..3335 /product="18S rRNA" BASE COUNT 859 a 745 c 951 g 774 t 6 others BASE COUNT 112 a 111 c 136 g 80 t 4118 others ORIGIN 1 |caccaccag gcgU||uaa- -------(-- ----gcaaau c--gcuc--- ---------- 61 ---------- ---------- --)------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- ---------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 -------|-- ---ua|Gcgc a---|----- ---------- ---|AGUGGg agu------- 781 ---------- ---------- --------(g aaaa------ ---------- ---------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ----gcu-u- 961 ----C--UGC U|--A----- -----|GUC- GG-------- uc-u-ga--- -----uu-ga 1021 u-(cuc---- ---------- ---------- ---------a ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 ---------- ---------- ---------- ---------- ---------- ---------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- ---------- -)-------- --a-uc---- 1561 ---------- ---------- ---------- ---------- ---------- ---------- 1621 ----gaucag --C--CGGC| --AA|CACC- G-U-C|AAAU |UG--C-UCG |GAAA----| 1681 U-CC------ ---------- ---------- -|Uguc---- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------A AG|-----CU 1801 GC-------- CG--G|U-AC C|-------- ---------- ---------- ---------- 1861 ---|GUC-U- GU-C-A---- -G-UG-(GAA A--------- ---------- ---------- 1921 ---------- -)-CGC--UG --G-C-C-A- G-A|----|c a-ccc-u-a- -ggga----- 1981 ---------- ---------- aa-cuu-ggg g|-------G CA-U|GGU-G ACA-AU-C-- 2041 CG--GUCAG| -auag----- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- --GGA|-CAA -|UG-AGCA| GCC|-AA--- 2221 |GUCC----- ------(--- ---------- ---------- ---------- ---------- 2281 ---------- ----)|-|U| AA----|ggg -uc------- ---------- ---------- 2341 (g-cga---- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ------g-ac cu-|A|U|-- ---------- GGAU|--GC| AGU|--UCA| CA-GACU-A| 2521 -AAU|GGC-G --G-UG|G|G ccga------ ---------- -(ugac---- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---ucGGCU- |UAA-GA-UA |UA-GUC|G| -|GU-----| cc---|cuac c--------- 2761 ----(-GAGA ---------- )--------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---------- ---------- 2881 ---------- -g--g-u-a- g|-------- --|-ucgaug gg-------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- -|----agga a--|ggau-- ----(--gca 3121 a--------- ---------- ---------- ---------- ---------- ---------- 3181 ---------- ---------- -----)---- ---ucc|--- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ---------- ---------- ---------- ---------- ---------- ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- --|cugaga- g--|------ ---------- --c---ccac 4021 cga|------ --------|g cuuc-aca-- ---------- ---------- ---------- 4081 -uaguacugc gcggu(gcaa )gccgugcag ggcagccugc c--------- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- ---------- -------ugu gaaagc|--- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------| ---ggagcaa a--------| -----AC|G- -||ggg-gac ugcggc| // LOCUS Sce.w.1.1 4557 bp RNA RNA 28-JAN-191 DEFINITION Scenedesmus wisconsinensis. ACCESSION No information KEYWORDS No information. SOURCE Scenedesmus wisconsinensis. ORGANISM Scenedesmus wisconsinensis. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 4557) Corresponding GenBank entry: AB037097 LOCUS AB037097 2265 bp DNA PLN 18-JUL-2000 DEFINITION Scenedesmus wisconsinensis gene for 18S rRNA, complete sequence. ACCESSION AB037097 VERSION AB037097.1 GI:9279829 KEYWORDS 18S ribosomal RNA. SOURCE Scenedesmus wisconsinensis (strain:An 41) DNA. ORGANISM Scenedesmus wisconsinensis Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Chlorococcales; Scenedesmaceae; Scenedesmus. REFERENCE 1 (sites) AUTHORS Hegewald,E. and Hanagata,N. TITLE Phylogenetic studies on Scenedesmaceae JOURNAL Unpublished (2000) REFERENCE 2 (bases 1 to 2265) AUTHORS Hanagata,N. TITLE Direct Submission JOURNAL Submitted (14-JAN-2000) to the DDBJ/EMBL/GenBank databases. Nobutaka Hanagata, The University of Tokyo, Research Center for Advanced Science and Technology; 4-6-1 Komaba, Meguro-ku, Tokyo 153-8904, Japan (E-mail:hanagata@bio.rcast.u-tokyo.ac.jp, Tel:81-3-5452-5320, Fax:81-3-5452-5320) FEATURES Location/Qualifiers source 1..2265 /organism="Scenedesmus wisconsinensis" /strain="An 41" /db_xref="taxon:113533" rRNA 1..2265 /product="18S rRNA" BASE COUNT 587 a 477 c 615 g 586 t BASE COUNT 144 a 121 c 146 g 112 t 4034 others ORIGIN 1 |caccaccag gcgU||uaa- -------(-- --uaaugcug aaagcuc--- ---------- 61 ---------- ---------- --)------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- ---------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 -------|-- ---ua|Gcgc c---|----- ---------- ---|AGUGAg ggg------- 781 ---------- ---------- --------(g aaa------- ---------- ---------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ----cuc-c- 961 ----U--UGC U|--A----- -----|GUC- AG-------- cc-a-cu--- -----ac-u- 1021 --(cau---- ---------- ---------- ---------u guc------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 ---------- ---------- ---------- ---------- ---------- ---------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- ---------- -)-------- ----ag---- 1561 ---------- ---------- ---------- ---------- ---------- ---------- 1621 ----uggugg --U--UGGC| --GA|CACC- U-U-C|AAAU |UG--C-UGG |GAAA----| 1681 U-CC------ ---------- ---------- -|u------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- --------AA AG|-----CC 1801 AC-------- UA-CA|U-AC C|-------- ---------- ---------- ---------- 1861 ---|AAG-G- GG-A-G---- -U-UG-(GAA A--------- ---------- ---------- 1921 ---------- -)-CAA--CU --C-U-C-U- G-G|----|c c-a-g-g-g- (uaauu---- 1981 ---------- --------)- ac-c-u-cg- g|-------G UA-U|GGU-G ACA-AU-UG- 2041 UA--G-UGG| -Auga----- ------|agu gag------- ---------- --(ccca--- 2101 ----)----- -------cuc acc|--aaaa u|-------- ---------- ---------- 2161 ---------- ---------- ---------- --GGA|-CAA -|CC-AGCA| GCC|-AA--- 2221 |GUCC----- ------(--- ---------- ---------- ---------- ---------- 2281 ---------- ----)|-|U| AA----|aca -uggcag--- ---------- ---------- 2341 (g-cuc-cac caugguggag ccuuuga--- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 --uugcc-gu gc-|A|U|-- ---------- GGAU|--GC| AGU|--UCA| CA-GACU-A| 2521 -AAU|GGA-G --G-UG|G|G cuauca---- ---------- -(uuggacgg accaauccuu 2581 ggacggucca cucgcaug-- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 -ugauAGCU- |UAA-GA-UA |UA-GUC|G| -|GC-----| cc---|cuac c--------- 2761 ----(-GAGA ---------- )--------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---------- ---------- 2881 ---------- -g--g-u-a- g|-------- --|-ucaaua gg-------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- -|----agga a--|gcau-- ----(--gca 3121 a--------- ---------- ---------- ---------- ---------- ---------- 3181 ---------- ---------- -----)---- --augc|--- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ---------- ---------- ---------- ---------- ---------- ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- --|-ggaga- g--|------ ---------- --c---cuau 4021 ugg|------ --------|a cauu-gca-- ---------- ---------- ---------- 4081 auaauacuuc uuggu(gcaa )gccaaguag ggcu(gaga) agcc------ ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- ---------- -------ugc a-augu|--- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------| ----ggaaug a--------| -----GC|G- -||gga--cc ugcggc| // LOCUS Sch.a.1.1 4557 bp RNA RNA 28-JAN-191 DEFINITION Schroederiella apiculata. ACCESSION No information KEYWORDS No information. SOURCE Schroederiella apiculata. ORGANISM Schroederiella apiculata. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 4557) Corresponding GenBank entry: AB037098 LOCUS AB037098 2252 bp DNA PLN 18-JUL-2000 DEFINITION Schroederiella apiculata gene for 18S rRNA, complete sequence. ACCESSION AB037098 VERSION AB037098.1 GI:9279830 KEYWORDS 18S ribosomal RNA. SOURCE Schroederiella apiculata (strain:SAG 47.86) DNA. ORGANISM Schroederiella apiculata Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Chlorococcales; Scenedesmaceae; Schroederiella. REFERENCE 1 (sites) AUTHORS Hegewald,E. and Hanagata,N. TITLE Phylogenetic studies on Scenedesmaceae JOURNAL Unpublished (2000) REFERENCE 2 (bases 1 to 2252) AUTHORS Hanagata,N. TITLE Direct Submission JOURNAL Submitted (14-JAN-2000) to the DDBJ/EMBL/GenBank databases. Nobutaka Hanagata, The University of Tokyo, Research Center for Advanced Science and Technology; 4-6-1 Komaba, Meguro-ku, Tokyo 153-8904, Japan (E-mail:hanagata@bio.rcast.u-tokyo.ac.jp, Tel:81-3-5452-5320, Fax:81-3-5452-5320) FEATURES Location/Qualifiers source 1..2252 /organism="Schroederiella apiculata" /strain="SAG 47.86" /db_xref="taxon:113536" rRNA 1..2252 /product="18S rRNA" BASE COUNT 585 a 477 c 613 g 577 t BASE COUNT 137 a 120 c 142 g 105 t 4053 others ORIGIN 1 |caccaccag gcgU||uaa- -------(-- ----uguaua u--gcugaua agcu------ 61 ---------- ---------- --)------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- ---------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 -------|-- --cua|Gcgc c---|----- ---------- ---|AGUGAg ggg------- 781 ---------- ---------- --------(g aaa------- ---------- ---------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ----ccc-c- 961 ----U--UGC U|--A----- -----|GUC- AG-------- cc-u-ga--- -----cu-c- 1021 --(ucu---- ---------- ---------- ---------u gu-------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 ---------- ---------- ---------- ---------- ---------- ---------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- ---------- -)-------- ----gg---- 1561 ---------- ---------- ---------- ---------- ---------- ---------- 1621 ----gacagg --C--UGGC| --AA|CACC- U-U-C|AAAU |UG--C-UGG |GAAA----| 1681 C-CU------ ---------- ---------- -|u------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- --------AA AG|-----CC 1801 AU-------- UG-CA|U-AC C|-------- ---------- ---------- ---------- 1861 ---|AAG-G- CA-G-G---- -U-UG-(GAA A--------- ---------- ---------- 1921 ---------- -)-CAA--UC --U-G-C-U- G-G|----|C C-A-G-G-U- (uaaua---- 1981 ---------- --------)- GC-C-U-CG- G|-------G UA-U|GGU-G ACA-AC-UG- 2041 CA--A-UGG| -Auuu----- ------|agc aag------- ---------- --(cuca--- 2101 ----)----- -------cuu gcu|--agaa u|-------- ---------- ---------- 2161 ---------- ---------- ---------- --AGG|-CAA -|CC-AGCA| GCC|-AA--- 2221 |GUCC----- ------(--- ---------- ---------- ---------- ---------- 2281 ---------- ----)|-|U| AA----|aca ugg------- ---------- ---------- 2341 (g-ggg-uuc caccauagga uggagccuca a--------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 -acaacc-au gc-|A|U|-- ---------- GGAU|--GC| AGU|--UCA| CA-GACU-A| 2521 -AAU|GGA-G --G-UG|G|G cugaca---- ---------- -(caa----- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 -ugucAGCU- |UAA-GA-UA |UA-GUC|G| -|-C-----| cc---|uuau c--------- 2761 ----(-GAAA ---------- )--------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---------- ---------- 2881 ---------- -g--a-u-a- c|-------- --|-ccagua ag-------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- -|----agga a--|gucug- ----(--uaa 3121 u--------- ---------- ---------- ---------- ---------- ---------- 3181 ---------- ---------- -----)---- u-agac|--- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ---------- ---------- ---------- ---------- ---------- ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- --|-ggaga- g--|------ ---------- --c---uuac 4021 ugg|------ --------|g ugcc-agg-- ---------- ---------- ---------- 4081 -uaguacuag ucagu(gcga )gcuggcuag ggcuccaccc ucggggggac c--------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- ---------- -------ucu g-gcac|--- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------| -----ggaau a--------| -----GC|G- -||gga-gcc ugcggc| // LOCUS Dun.s.1.1 4557 bp RNA RNA 28-JAN-191 DEFINITION Dunaliella salina. ACCESSION No information KEYWORDS No information. SOURCE Dunaliella salina. ORGANISM Dunaliella salina. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 4557) Corresponding GenBank entry: M84320 Dunaliella salina Type A algal nuclear encoded SSU rRNA group 1B intron BASE COUNT 124 a 93 c 116 g 89 t 4135 others ORIGIN 1 |caccaccag gcgU||u--- -------(-- ---aacuuag cagc-----a agcuc----- 61 ---------- ---------- --)------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- ---------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 -------|-- ----a|Gcgc cu--|----- ---------c aa-|AGUCGa agg------- 781 ---------- ---------- --------(G AAA------- ---------- ---------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ----ccu-u- 961 ----U--GGC U|--A----- -----|GUA- UC-------- ug-ggug--- ---------- 1021 --(uag---- ---------- ---------- ---------a uuu------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 ---------- ---------- ---------- ---------- ---------- ---------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- ---------- -)-------- ---------- 1561 ---------- ---------- ---------- ---------- ---------- ---------- 1621 ----caccua --A--GUGC| --AA|CACU- GUU-C|AAAU |UG--C-GGG |AAAG----| 1681 C-CC------ ---------- ---------- -|U------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- --------AA AG|------C 1801 UU-------- UG-CU|A-AC C|-------- ---------- ---------- ---------- 1861 ---|AAG-C- UG-U-C---- -C-UA-(GAA A--------- ---------- ---------- 1921 ---------- -)-UGG--GA --U-G-G-U- G-G|----|C C-A-G-G-U- (gaaag---- 1981 ---------- --------)- AC-C-U-UG- G|-------G UA-C|GGU-A AAA-UC-AG- 2041 CA--A-AG-| -A-------- ------|ug- ---------- ---------- --(ca-a--- 2101 ----)----- ---------- -ca|-----a u|-------- ---------- ---------- 2161 ---------- ---------- ---------- --GGG|-CAA -|UC-CGCA| GCC|-AAg-- 2221 |CUCC----- ------(--- ---------- ---------- ---------- ---------- 2281 ---------- ----)|-|U| AC----|ggg cu-------- ---------- ---------- 2341 (g-uca-a-- ---------- ---------- ---------- ---------- ---------- 2401 -------)-- ---------- ---------- ---------- ---------- -------|-- 2461 ------a-gc cu-|A|U|-- ---------- GGAG|--AA| GGU|--UCA| GA-GACU-A| 2521 -AAU|GGC-A --G-UG|G|G CAagcau--- ---------- -(ggca---- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------) ---------- 2701 augcuUGCU- |UAA-GA-UA |UA-GUC|C| -|GU-----| cc---|cagc u--------- 2761 ----(-GAGA ---------- )--------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---------- ---------- 2881 --|------- -a--g-c-u- g|-------- --|-ccuaug ag-------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- -|----agga a--|ugcc-- ----(--gua 3121 a--------- ---------- ---------- ---------- ---------- ---------- 3181 ---------- ---------- -----)---- --ggca|--- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ---------- ---------- ---------- ---------- ---------- ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- --|-ggaga- g--|------ ---------- --c---uaau 4021 agg|------ --------|a agua-agu-- ---------- ---------- ---------( 4081 gucuuuaauc a--------- ---------- ---------- ---------- ---------- 4141 -)-------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- --------|- -------acu u-acuu|--- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------| ----ggauuc c--------| -----AC|G- -||gga-gcc ugcggc| // LOCUS Glo.p.1.1 4557 bp RNA RNA 17-FEB-1995 DEFINITION Gloeotilopsis planctonica.. ACCESSION No information KEYWORDS No information. SOURCE Gloeotilopsis planctonica. ORGANISM Gloeotilopsis planctonica. REFERENCE 1 (bases 1 to 375) AUTHORS Friedl,T. TITLE Assessing the relationships of some coccoid green lichen algae and the Microthamniales (Chlorophyta) with 18S ribosomal RNA gene sequence comparisons JOURNAL J. Phycol. 30, 500-506 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4557) Corresponding GenBank entry: Z28970 LOCUS GPRRNAS 2812 bp rRNA PLN 26-JAN-1998 DEFINITION G.planctonica 5.8S, 18S and 26S rRNA genes. ACCESSION Z28970 NID g1160446 VERSION Z28970.1 GI:1160446 KEYWORDS 18S ribosomal RNA; 18S rRNA gene; 26S ribosomal RNA; 26S rRNA gene; 5.8S ribosomal RNA; 5.8S rRNA gene; internal transcribed spacer; ITS1; ITS2. SOURCE Gloeotilopsis planctonica. ORGANISM Gloeotilopsis planctonica Eukaryota; Viridiplantae; Chlorophyta; Ulvophyceae; Ulotrichales; Gloeotilopsis. REFERENCE 1 (bases 1160 to 1587) AUTHORS Bhattacharya,D., Friedl,T. and Damberger,S. TITLE Nuclear-encoded rDNA group I introns: origin and evolutionary relationships of insertion site lineages in the green algae JOURNAL Unpublished REFERENCE 2 (bases 2215 to 2812) AUTHORS Friedl,T. TITLE Evolution of the polyphyletic genus Pleurastrum (Chlorophyta): inferences from the nuclear-encoded ribosomal DNA sequences and motile cell ultrastructure JOURNAL Unpublished REFERENCE 3 (bases 1 to 1159; 1588 to 2214) AUTHORS Friedl,T. and Zeltner,C. TITLE Assessing the relationships of some coccoid green lichen algae and the Microthamniales (Chlorophyta) with 18S ribosomal RNA gene sequence comparisons JOURNAL J. Phycol. 30, 500-506 (1994) REFERENCE 4 (bases 1 to 2812) AUTHORS Friedl,T. TITLE Direct Submission JOURNAL Submitted (10-DEC-1993) Thomas Friedl, Lehrstuhl Pflanzensystematik, Universitaet Bayreuth, Universitaetsstr. 30, 95440 Bayreuth, Germany COMMENT On Jan 18, 1996 this sequence version replaced gi:671869. BASE COUNT 100 a 130 c 144 g 79 t 4104 others ORIGIN 1 |caccaccag gcgU||a--- -------(-- --aaaccaag ccguu----u ggcuc----- 61 ---------- ---------- --)------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- ---------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 -------|-- ----u|Gcgc c---|----- ---------- ---|AGUCGg gu-------- 781 ---------- ---------- --------(g ugagga---g ggccu----- ---------- 841 ---------- caaa-caa-g --cuccucac --acgagaa- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- -----ac-c- 961 ----C--GGC U|--A----- -----|GUC- CU-------- gg-ugcg--- -----g---- 1021 c-(uug---- ---------- ---------- ---------c aucgcgcc-- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 ---------- ---------- ---------- ---------- ---------- ---------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- ---------- -)-------- ----gc---- 1561 ---------- ---------- ---------- ---------- ---------- ---------- 1621 ----cgcacc --U--GGGC| --AA|CAUC- A-U-C|GAAU |UG--C-UGG |AAAC----| 1681 C-CC------ ---------- ---------- -|U------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- --------AA AG|------C 1801 UC-------- UU-GG|U-AC C|-------- ---------- ---------- ---------- 1861 ---|AAC-C- UG-C-A---- -U-GG-(GAA A--------- ---------- ---------- 1921 ---------- -)-UCG--UG --C-G-G-G- G-G|----|C C-C------- (acucc---- 1981 ---------- --------)- -----G--G- G|-------G -a--|GGU-u aua-AU-CC- 2041 AA--G-AG-| -A-------- ------|ug- ---------- ---------- --(ca-a--- 2101 ----)----- ---------- -ca|-----a u|-------- ---------- ---------- 2161 ---------- ---------- ---------- --GGG|-CAA -|UC-AGCA| GCG|-AAg-- 2221 |ACCC----- ------(--- ---------- ---------- ---------- ---------- 2281 ---------- ----)|-|U| GU----|cgg uugggac--- ---------- ---------- 2341 (u-ugc---- ---------- ---------- ---------- ---------- ---------- 2401 -------)-- ---------- ---------- ---------- ---------- -------|-- 2461 -gucccg-gc cc-|A|U|-- ---------- GGGU|--AA| CGU|--UCA| GA-GACU-A| 2521 -AGU|GGU-G --A-UG|G|G CCccga---- ---------- -(ugcc-acc c--ggcc--- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 -ucggGGCU- |UAA-GA-UA |UA-GUC|C| g|GC-----| cc---|cggc ---------- 2761 ----(-GAAA ---------- )--------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---------- ---------- 2881 --|------- ----g-c-c- g|a------- --|-ugucga g--------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- -|----auga g--|ggggu- ----(--gcg 3121 ---------- ---------- ---------- ---------- ---------- ---------- 3181 ---------- ---------- -----)---- a-cccc|--- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ---------- ---------- ---------- ---------- ---------- ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- --|---aga- g--|------ ---------- ------cucg 4021 gca|------ --------|g uagg-gau-- ---------- ---------- ---------( 4081 caga------ ---------- ---------- ---------- ---------- ---------- 4141 -)-------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- --------|- -------guu c-cugc|--- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- -----ucuaa u--------| -----GU|G- -||gga-gcg ugcggc| // LOCUS Ple.p.1.1 4557 bp RNA RNA 30-JAN-1995 DEFINITION Pleurastrum paucicellulare. ACCESSION No information KEYWORDS No information. SOURCE Pleurastrum paucicellulare. ORGANISM Pleurastrum paucicellulare. REFERENCE 1 (bases 1 to 375) AUTHORS Debashish JOURNAL No information STANDARD No information COMMENTS Sequence information (bases 1 to 4557) Corresponding GenBank entry: Z47997 LOCUS PPRRNAS 3669 bp rRNA PLN 26-JAN-1998 DEFINITION P.paucicellulare 5.8S, 18S and 26S rRNA genes. ACCESSION Z47997 NID g1545963 VERSION Z47997.1 GI:1545963 KEYWORDS 18S ribosomal RNA; 18S rRNA gene; 26S ribosomal RNA; 26S rRNA gene; 5.8S ribosomal RNA; 5.8S rRNA gene; internal transcribed spacer; ITS1; ITS2. SOURCE Pleurastrum paucicellulare. ORGANISM Pleurastrum paucicellulare Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Chlorococcales; Pleurastrum. REFERENCE 1 (bases 1 to 3071) AUTHORS Bhattacharya,D., Friedl,T. and Damberger,S. TITLE Nuclear-encoded rDNA group I introns: origin and evolutionary relationships of insertion site lineages in the green algae JOURNAL Unpublished REFERENCE 2 (bases 1 to 3669) AUTHORS Friedl,T. TITLE Direct Submission JOURNAL Submitted (25-JAN-1995) Thomas Friedl, Lehrstuhl Pflanzensystematik, Univeristaet, Bayreuth, Universitaetsstrasse 30, Bayreuth, 95440, Germany REFERENCE 3 (bases 1 to 3669) AUTHORS Friedl,T. TITLE Evolution of the polyphyletic genus Pleurastrum (Chlorophyta): inferences from the nuclear-encoded ribosomal DNA sequences and motile cell ultrastructure JOURNAL Unpublished REFERENCE 4 (bases 1 to 3669) AUTHORS Bhattacharya,D., Friedl,T. and Damberger,S. TITLE Nuclear-encoded rDNA group I introns: origin and phylogenetic relationships of insertion site lineages in the green algae JOURNAL Mol. Biol. Evol. 13 (7), 978-989 (1996) MEDLINE 96364221 REFERENCE 5 (bases 1 to 3669) AUTHORS Friedl,T. TITLE Evolution of the polyphyletic genus Pleurastrum (Chlorophyta): inferences from nuclear-encoded ribosomal DNA sequences and motile cell ultrastructure JOURNAL Phycologia 35, 456-469 (1996) COMMENT On Sep 15, 1996 this sequence version replaced gi:1040748. FEATURES Location/Qualifiers BASE COUNT 98 a 126 c 140 g 77 t 4116 others ORIGIN 1 |~~~~~ccag gcgU||a--- -------(-- --aaaccaag ccguu----u ggcuc----- 61 ---------- ---------- --)------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- ---------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 -------|-- ----u|Gcgc c---|----- ---------- ---|AGUCGg gu-------- 781 ---------- ---------- --------(g ugagga---g ggccu----- ---------- 841 ---------- caaa-caa-g --cuccucac --acgagaa- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- -----ac-c- 961 ----C--GGC U|--A----- -----|GUC- CU-------- gg-ugcg--- -----g---- 1021 c-(uug---- ---------- ---------- ---------c aucgcgcc-- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 ---------- ---------- ---------- ---------- ---------- ---------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- ---------- -)-------- ----gc---- 1561 ---------- ---------- ---------- ---------- ---------- ---------- 1621 ----cgcacc --U--GGGC| --AA|CAUC- A-U-C|GAAU |UG--C-UGG |AAAC----| 1681 C-CC------ ---------- ---------- -|U------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- --------AA AG|------C 1801 UC-------- UU-GG|U-AC C|-------- ---------- ---------- ---------- 1861 ---|AAC-C- UG-C-A---- -U-GG-(GAA A--------- ---------- ---------- 1921 ---------- -)-CCG--UG --C-G-G-G- G-G|----|C C-C------- (acucc---- 1981 ---------- --------)- -----G--G- G|-------G -a--|GGU-u aua-AU-CC- 2041 AA--G-AG-| -A-------- ------|ug- ---------- ---------- --(ca-a--- 2101 ----)----- ---------- -ca|-----a u|-------- ---------- ---------- 2161 ---------- ---------- ---------- --GGG|-CAA -|UC-AGCA| GCG|-AAg-- 2221 |ACCC----- ------(--- ---------- ---------- ---------- ---------- 2281 ---------- ----)|-|U| GU----|cgg uugggac--- ---------- ---------- 2341 (u-ugc---- ---------- ---------- ---------- ---------- ---------- 2401 -------)-- ---------- ---------- ---------- ---------- -------|-- 2461 -gucccg-gc cc-|A|U|-- ---------- GGGU|--AA| CGU|--UCA| GA-GACU-A| 2521 -AGU|GGU-G --A-UG|G|G CCccga---- ---------- -(ugcc-acc c--ggcc--- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 -ucggGGCU- |UAA-GA-UA |UA-GUC|C| g|GC-----| cc---|cggc ---------- 2761 ----(-GAAA ---------- )--------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---------- ---------- 2881 --|------- ----g-c-c- g|a------- --|-ugucga g--------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- -|----auga g--|ggggu- ----(--gcg 3121 ---------- ---------- ---------- ---------- ---------- ---------- 3181 ---------- ---------- -----)---- a-cccc|--- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ---------- ---------- ---------- ---------- ---------- ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- --|---aga- g--|------ ---------- ------cucg 4021 gca|------ ----g---|u aggg------ ---------- ---------- ---------( 4081 aucagaguuc cug------- ---------- ---------- ---------- ---------- 4141 -)-------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- ---------- ---------- c-ucua|--- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------a u--------| -----GU|N- -||gga-gcg ~~~~~~| // LOCUS Pro.s.1.1 4557 bp RNA RNA 08-JAN-1994 DEFINITION Protoderma sarcinoidea UTEX 1710 subsp. Pleurastrum sarcinoideum Z47998. ACCESSION No information KEYWORDS No information. SOURCE Protoderma sarcinoidea UTEX 1710 subsp. Pleurastrum sarcinoideum Z47998. ORGANISM Protoderma sarcinoidea UTEX 1710. REFERENCE 1 (bases 1 to 375) AUTHORS Debashish JOURNAL No information STANDARD No information COMMENTS Sequence information (bases 1 to 4557) Corresponding GenBank entry: Z47998 LOCUS PSRRNAS 3239 bp RNA PLN 16-DEC-1997 DEFINITION P.sarcinoidea 5.8S, 18S and 26S rRNA genes. ACCESSION Z47998 NID g1545964 KEYWORDS 18S ribosomal RNA; 18S rRNA gene; 26S ribosomal RNA; 26S rRNA gene; 5.8S ribosomal RNA; 5.8S rRNA gene; internal transcribed spacer; ITS1; ITS2. SOURCE Protoderma sarcinoidea. ORGANISM Protoderma sarcinoidea Eukaryotae; Viridiplantae; Chlorophyta; Ulvophyceae; Ulotrichales; Protoderma. REFERENCE 1 (bases 1 to 3239) AUTHORS Friedl,T. TITLE Evolution of the polyphyletic genus Pleurastrum (Chlorophyta): inferences from nuclear-encoded ribosomal DNA sequences and motile cell ultrastructure JOURNAL Phycologia 35, 456-469 (1996) REFERENCE 2 (bases 1 to 3239) AUTHORS Bhattacharya,D., Friedl,T. and Damberger,S. TITLE Nuclear-encoded rDNA group I introns: origin and phylogenetic relationships of insertion site lineages in the green algae JOURNAL Mol. Biol. Evol. 13 (7), 978-989 (1996) MEDLINE 96364221 REFERENCE 3 (bases 1 to 3239) AUTHORS Friedl,T. TITLE Direct Submission JOURNAL Submitted (25-JAN-1995) Thomas Friedl, Lehrstuhl Pflanzensystematik, Univeristaet, Bayreuth, Universitaetsstrasse 30, Bayreuth, 95440, Germany FEATURES Location/Qualifiers source 1..3239 /organism="Protoderma sarcinoidea" /strain="UTEX 1710" /db_xref="taxon:53263" rRNA join(1..1141,1585..2186,2637..2661) /gene="18S rRNA" /note="coding region, exon" /citation=[1] /product="small subunit (18S) ribosomal RNA" gene 1..2661 /gene="18S rRNA" primer_bind 1..16 /gene="18S rRNA" /note="PCR primer" intron 1142..1584 /gene="18S rRNA" /note="group I intron" /citation=[2] intron 2187..2636 /gene="18S rRNA" /note="group I intron" /citation=[2] rRNA 2662..2851 /note="internal transcribed spacer (ITS 1)" /citation=[1] rRNA 2852..3004 /gene="5.8S rRNA" /citation=[1] /product="5.8S ribosomal RNA" gene 2852..3004 /gene="5.8S rRNA" rRNA 3005..3187 /note="internal transcribed spacer (ITS 2)" /citation=[1] rRNA 3188..>3239 /gene="26S rRNA" /citation=[1] /product="large subunit (26S) ribosomal RNA" gene 3188..3239 /gene="26S rRNA" BASE COUNT 801 a 768 c 910 g 758 t 2 others BASE COUNT 110 a 125 c 150 g 83 t 4089 others ORIGIN 1 |caccaccag gcgU||a--- -------(-- ---aaccuag ccguu----u ggcuc----- 61 ---------- ---------- --)------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- ---------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 -------|-- ----u|Gcgc c---|----- ---------- ---|AGUCGg gu-------- 781 ---------- ---------- --------(g ugagaa---g ggccuaguuc ac-------- 841 --uauggugg uaaa-caa-g --cuucucac gcaugagca- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- -----ac-c- 961 ----C--GGC U|--A----- -----|GUC- CG-------- cc-acac--- ---------- 1021 --(cag---- ---------- ---------- ---------c agucgcaca- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 ---------- ---------- ---------- ---------- ---------- ---------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- ---------- -)-------- ---------- 1561 ---------- ---------- ---------- ---------- ---------- ---------- 1621 ----gugugg --Ca-GGGC| --AA|CAUC- A-U-C|GAAU |UG--C-UGG |GAAG----| 1681 C-CC------ ---------- ---------- -|U------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- --------AA AG|------C 1801 UC-------- UU-GG|U-AC C|-------- ---------- ---------- ---------- 1861 ---|AAC-C- UG-C-A---- -G-CG-(GAA A--------- ---------- ---------- 1921 ---------- -)-CGC--UC --G-G-G-G- G-G|----|C C-C-C----- (gcuca---- 1981 ---------- --------)- ---G-G--G- G|-------G -a--|GGU-g aua-AU-CC- 2041 AA--GcAG-| -A-------- ------|ug- ---------- ---------- --(ca-a--- 2101 ----)----- ---------- -ca|-----a u|-------- ---------- ---------- 2161 ---------- ---------- ---------- --GGG|-UGA -|UC-AGCA| GCG|-AAg-- 2221 |UCCC----- ------(--- ---------- ---------- ---------- ---------- 2281 ---------- ----)|-|U| GU----|agg c--------- ---------- ---------- 2341 (c-gcc-a-- ---------- ---------- ---------- ---------- ---------- 2401 -------)-- ---------- ---------- ---------- ---------- -------|-- 2461 --------gc cc-|A|C|-- ---------- GGGA|--AA| CGU|--UCA| GA-GACU-A| 2521 -UGU|GGU-G --A-UG|G|G CUu------- ---------- -(ugaccucu gcggucu--- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ----gAGCU- |UAA-GA-UA |UA-GUC|C| -|ga-----| ccc--|cggc ---------- 2761 ----(-GAGA ---------- )--------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---------- ---------- 2881 --|------- ----g-c-c- g|a------- --|-ugucga g--------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- -|----agga ga-|ggggu- ----(--gcg 3121 ---------- ---------- ---------- ---------- ---------- ---------- 3181 ---------- ---------- -----)---- a-cccc|--- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ---------- ---------- ---------- ---------- ---------- ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- --|---gga- g--|------ ---------- ------cucg 4021 gca|------ ----g---|u aggg-a---- ---------- ---------- ---------( 4081 gacacacagu aug------- ---------- ---------- ---------- ---------- 4141 -)-------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- ---------- ---------u u-ccug|--- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------a --ucugaagu au-------- -----ac|G- -||gga-gcg ugcggc| // LOCUS Aca.l.2.1 4557 bp RNA RNA 07-MAY-1998 DEFINITION Acanthamoeba lenticulata strain E18-2. str. E18-2 18S small subunit ribosomal RNA gene, partial sequence. ACCESSION No information KEYWORDS No information. SOURCE Acanthamoeba lenticulata strain E18-2. str. E18-2 18S small subunit ribosomal RNA gene, partial sequence. ORGANISM Acanthamoeba lenticulata strain E18-2. REFERENCE 1 (bases 1 to 375) AUTHORS Byers,T.J. Stothard,D.R., Schroeder-Diedrich,J.M., Awwad,M.H., Gast,R.J., Ledee,D.R., Rodriguez-Zaragoza,S., Dean,C.L., Fuerst,P.A. and TITLE identification of eight new 18S rRNA gene sequence types The evolutionary history of the genus Acanthamoeba and the JOURNAL J. Eukaryot. Microbiol. 45 (1), 45-54 (1998) STANDARD No information COMMENTS Sequence information (bases 1 to 4557) Corresponding GenBank entry: U94735 LOCUS U94735 2935 bp DNA INV 07-MAY-1998 DEFINITION Acanthamoeba lenticulata strain E18-2 18S small subunit ribosomal RNA gene, partial sequence. ACCESSION U94735 NID g3115366 KEYWORDS . SOURCE Acanthamoeba lenticulata. ORGANISM Acanthamoeba lenticulata Eukaryota; Acanthamoebidae; Acanthamoeba. REFERENCE 1 (bases 1 to 2935) AUTHORS Stothard,D.R., Schroeder-Diedrich,J.M., Awwad,M.H., Gast,R.J., Ledee,D.R., Rodriguez-Zaragoza,S., Dean,C.L., Fuerst,P.A. and Byers,T.J. TITLE The evolutionary history of the genus Acanthamoeba and the identification of eight new 18S rRNA gene sequence types JOURNAL J. Eukaryot. Microbiol. 45 (1), 45-54 (1998) MEDLINE 98156136 REFERENCE 2 (bases 1 to 2935) AUTHORS Schroeder-Diedrich,J.M., Fuerst,P.A. and Byers,T.J. TITLE Unusual group I introns occur at 3 sites in nuclear 18S rRNA genes of Acanthamoeba lenticulata JOURNAL Unpublished REFERENCE 3 (bases 1 to 2935) AUTHORS Schroeder-Diedrich,J.M. TITLE Direct Submission JOURNAL Submitted (20-MAR-1997) Molecular Genetics, The Ohio State University, 484 W. 12th. Avenue, Columbus, OH 43210, USA FEATURES Location/Qualifiers source 1..2935 /organism="Acanthamoeba lenticulata" /strain="E18-2; ATCC50690" /db_xref="taxon:29196" /db_xref="ATCC:50690" rRNA join(<1..1480,2122..>2935) /product="18S small subunit ribosomal RNA" intron 1481..2121 /note="group I" BASE COUNT 788 a 579 c 729 g 838 t 1 others BASE COUNT 240 a 100 c 111 g 214 t 3892 others ORIGIN 1 |caccaccag gagU||a--- -------(-- ---aacacaa ccaaaccaaa ccaagguuc- 61 ---------- ---------- --)------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- ---------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 -------|-- ----u|Gcuc cu--|----- --------ua aa-|------ ---------- 781 ---------- ---------- --------(g caacaauu-- ---------- ---------- 841 ---------- ---------- ---------- ---------- ---------- -----)---- 901 ---------- ---------- ---------- ---------- ---------- -----uuuau 961 ----c--uac u|--a----- -----|gun- uu-------- gc-auau--- -----auau- 1021 ---aua---- ---------- ---------- ---------u ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 ---------- ---------- ---------- ---------- ---------- ---------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- ---------- ---------- -au-au---- 1561 ---------- ---------- ---------- ---------- ---------- ---------- 1621 ----auaugc --a--aagc| --AA|CACU- A-U-C|AAAU |UG--C-AGG |GAGU----| 1681 C-UC------ ---------- ---------- -|Uuucuuuc uuucuuucuc ucuuucuaua 1741 uauauauaua uauagagaga gagagagaga gagagagaa- --------uc aa|------g 1801 aaaa------ AA-UC|U-AC C|-------- ---------- ---------- ---------- 1861 ---|-gu-g- ca-c-a---- -u-ac-(aua uaga---aua aua------- ---------- 1921 --------ua a)--UA--UG --U-G-C-A- A-A|----|c c-c-u----- (aacucucuc 1981 uuucaaggag gagga---)- ---a-g-ag- g|-------U UA-U|GGU-A AAA-AU-GA- 2041 UUuauuuc-| -uuuu----- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- --GAG|Auga -|UC-UGCA| GCC|-AAAc- 2221 |ccau----- ------(--- ---------- ---------- ---------- ---------- 2281 ---------- ----)|-|-| -------uag uaguaguaau aauaaua--- ---------- 2341 (a-acu-auu cc-------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- --uauuauua 2461 uuauuauuau ua-----|-- ---------- augg|acGC| AGU|--CCA| CA-GACU-A| 2521 -GAU|GAU-A caG-UG|G|G CAGuauauau au-------- -(auau---- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------) ---auauaua 2701 uauacUGUU- |UAA-GA-AA |UA-GUC|G| -|AC-----| ccu--|gccu uuauauuauu 2761 gauu(uuuuu uu-------- )gau---aua uauau--aua uaaaggcuuc cuucaacaaa 2821 aaaaaaagag uguaggaaag cuc------- ---------- ---------- ---------- 2881 ---------- ---------- ---------- ----uucuuu uuuuuucuuu uucuuuuuuc 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---|uuuuu- c---(--uuu 3121 a--------- ---------- ---------- ---------- ---------- ---------- 3181 ---------- ---------- -----)---g a-aaaa|--- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ---------- ---------- ---------- ---------- ---------- ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ----aagaaa gacaagagag aga---gaga 4021 gag|agagag aga--cag|a ag-------- ---------- ---------- ---------( 4081 agcuagga-- ---------- ---------- ---------- ---------- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- ---------- ---------- ---cuu|--- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- -----auagg c--------- -----GU|G- -||gga-gcc ugcggc| // LOCUS Aca.l.3.1 4557 bp RNA RNA 07-MAY-1998 DEFINITION Acanthamoeba lenticulata strain PD2S. str. PD2S 18S small subunit ribosomal RNA gene, partial sequence. ACCESSION No information KEYWORDS No information. SOURCE Acanthamoeba lenticulata strain PD2S. str. PD2S 18S small subunit ribosomal RNA gene, partial sequence. ORGANISM Acanthamoeba lenticulata strain PD2S. REFERENCE 1 (bases 1 to 375) AUTHORS Ledee,D.R., Rodriguez-Zaragoza,S., Dean,C.L., Fuerst,P.A. and Byers,T.J. Stothard,D.R., Schroeder-Diedrich,J.M., Awwad,M.H., Gast,R.J., TITLE identification of eight new 18S rRNA gene sequence types The evolutionary history of the genus Acanthamoeba and the JOURNAL J. Eukaryot. Microbiol. 45 (1), 45-54 (1998) STANDARD No information COMMENTS Sequence information (bases 1 to 4557) Corresponding GenBank entry: U94741 LOCUS U94741 2950 bp DNA INV 07-MAY-1998 DEFINITION Acanthamoeba lenticulata strain PD2S 18S small subunit ribosomal RNA gene, partial sequence. ACCESSION U94741 NID g3115372 KEYWORDS . SOURCE Acanthamoeba lenticulata. ORGANISM Acanthamoeba lenticulata Eukaryota; Acanthamoebidae; Acanthamoeba. REFERENCE 1 (bases 1 to 2950) AUTHORS Stothard,D.R., Schroeder-Diedrich,J.M., Awwad,M.H., Gast,R.J., Ledee,D.R., Rodriguez-Zaragoza,S., Dean,C.L., Fuerst,P.A. and Byers,T.J. TITLE The evolutionary history of the genus Acanthamoeba and the identification of eight new 18S rRNA gene sequence types JOURNAL J. Eukaryot. Microbiol. 45 (1), 45-54 (1998) MEDLINE 98156136 REFERENCE 2 (bases 1 to 2950) AUTHORS Schroeder-Diedrich,J.M., Fuerst,P.A. and Byers,T.J. TITLE Unusual group I introns occur at 3 sites in nuclear 18S rRNA genes of Acanthamoeba lenticulata JOURNAL Unpublished REFERENCE 3 (bases 1 to 2950) AUTHORS Schroeder-Diedrich,J.M. TITLE Direct Submission JOURNAL Submitted (20-MAR-1997) Molecular Genetics, The Ohio State University, 484 W. 12th. Avenue, Columbus, OH 43210, USA FEATURES Location/Qualifiers source 1..2950 /organism="Acanthamoeba lenticulata" /strain="PD2S; ATCC30841" /db_xref="taxon:29196" /db_xref="ATCC:30841" rRNA <1..>2950 /product="18S small subunit ribosomal RNA" intron 1481..2136 /note="group I intron previously published by Gast et al.; see GenBank Accession Number U02539" BASE COUNT 790 a 579 c 729 g 850 t 2 others BASE COUNT 242 a 100 c 111 g 226 t 3878 others ORIGIN 1 |caccaccag gagU||a--- -------(-- ---aacacaa ccaaaccaaa ccaagguuc- 61 ---------- ---------- --)------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- ---------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 -------|-- ----u|Gcuc cu--|----- ---------- ---|uaaa-- ---------- 781 ---------- ---------- --------(g caacaauu-- ---------- ---------- 841 ---------- ---------- ---------- ---------- ---------- -----)---- 901 ---------- ---------- ---------- ---------- ---------- -----uuuau 961 ----c--uac u|--a----- -----|guu- uu-------- uu-auau--- -----auau- 1021 ---aua---- ---------- ---------- ---------u auau------ ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 ---------- ---------- ---------- ---------- ---------- ---------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- ---------- ---------- -au-au---- 1561 ---------- ---------- ---------- ---------- ---------- ---------- 1621 ----auaugc --a--aagc| --AA|CACU- A-U-c|AAAU |UG--C-AGG |GAGU----| 1681 C-UC------ ---------- ---------- -|Uuucuuuc uuucuuuuuc gucguuuccu 1741 auauauaua- uauauauaga gagagagaga gagagagaau c-------ga ag|------g 1801 aaaa------ AA-UC|U-AC C|-------- ---------- ---------- ---------- 1861 ---|-gu-g- ca-c-a---- -u-ac-(aua uacg---aau aana------ ---------- 1921 --------ua a)--UA--UG --U-G-C-A- A-A|----|c c-c-u----- (aacucucuc 1981 uuucaaggag gaggagga)- ---a-g-ag- g|-------U UA-U|GGUUA AAA-AU-GA- 2041 UUuuauuuc| -uuuu----- -------u-- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- --GAG|auug a|UC-UGCA| GCC|-AAAc- 2221 |ccau----- ------(--- ---------- ---------- ---------- ---------- 2281 ---------- ----)|-|-| -------uag uaguaguaau aauaaua--- ---------- 2341 (a-acu-auu ccuau----- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- --uauuauua 2461 uuauuauuau ua-----|-- ---------- aug-|acGC| AGU|--CCA| CA-GACU-A| 2521 -GAU|GAU-A caG-UG|G|G CAGuauauau auau------ -(auau---- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------) -----auaua 2701 uauacUNUU- |UAA-GA-AA |UA-GUC|G| -|AC-----| ccu--|gccu uuauauuauu 2761 gauu(uuuuu uu-------- )gau---aua uauauauaua uaaaggcuuc cuucaacaaa 2821 aaaaaaagag uguaggaaag cuc------- ---------- ---------- ---------- 2881 ---------- ---------- ---------- ----uucuuu uuuuuucuuu uucuuuuuuc 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---|uuuuu- c---(--uuu 3121 a--------- ---------- ---------- ---------- ---------- ---------- 3181 ---------- ---------- -----)---g a-aaaa|--- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ---------- ---------- ---------- ---------- ---------- ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ----aagaaa gacaagagag aga---gaga 4021 gag|agagag a----cag|a ag-------- ---------- ---------- ---------( 4081 agcuagga-- ---------- ---------- ---------- ---------- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- ---------- ---------- ---cuu|--- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- -----auagg c--------- -----GU|G- -||gga-gcc ugcggc| // LOCUS Aca.l.4.1 4557 bp RNA RNA 07-MAY-1998 DEFINITION Acanthamoeba lenticulata strain 53-2. str. 53-2 18S small subunit ribosomal RNA gene, partial sequence. ACCESSION No information KEYWORDS No information. SOURCE Acanthamoeba lenticulata strain 53-2. str. 53-2 18S small subunit ribosomal RNA gene, partial sequence. ORGANISM Acanthamoeba lenticulata strain 53-2. REFERENCE 1 (bases 1 to 375) AUTHORS Byers,T.J. Stothard,D.R., Schroeder-Diedrich,J.M., Awwad,M.H., Gast,R.J., Ledee,D.R., Rodriguez-Zaragoza,S., Dean,C.L., Fuerst,P.A. and TITLE The evolutionary history of the genus Acanthamoeba and the identification of eight new 18S rRNA gene sequence types JOURNAL J. Eukaryot. Microbiol. 45 (1), 45-54 (1998) STANDARD No information COMMENTS Sequence information (bases 1 to 4557) Corresponding GenBank entry: U94737 LOCUS U94737 2930 bp DNA INV 07-MAY-1998 DEFINITION Acanthamoeba lenticulata strain 53-2 18S small subunit ribosomal RNA gene, partial sequence. ACCESSION U94737 NID g3115368 KEYWORDS . SOURCE Acanthamoeba lenticulata. ORGANISM Acanthamoeba lenticulata Eukaryota; Acanthamoebidae; Acanthamoeba. REFERENCE 1 (bases 1 to 2930) AUTHORS Stothard,D.R., Schroeder-Diedrich,J.M., Awwad,M.H., Gast,R.J., Ledee,D.R., Rodriguez-Zaragoza,S., Dean,C.L., Fuerst,P.A. and Byers,T.J. TITLE The evolutionary history of the genus Acanthamoeba and the identification of eight new 18S rRNA gene sequence types JOURNAL J. Eukaryot. Microbiol. 45 (1), 45-54 (1998) MEDLINE 98156136 REFERENCE 2 (bases 1 to 2930) AUTHORS Schroeder-Diedrich,J.M., Fuerst,P.A. and Byers,T.J. TITLE Unusual group I introns occur at 3 sites in nuclear 18S rRNA genes of Acanthamoeba lenticulata JOURNAL Unpublished REFERENCE 3 (bases 1 to 2930) AUTHORS Schroeder-Diedrich,J.M. TITLE Direct Submission JOURNAL Submitted (20-MAR-1997) Molecular Genetics, The Ohio State University, 484 W. 12th. Avenue, Columbus, OH 43210, USA FEATURES Location/Qualifiers source 1..2930 /organism="Acanthamoeba lenticulata" /strain="53-2; ATCC50641" /db_xref="taxon:29196" /db_xref="ATCC:50641" rRNA join(<1..1480,2117..>2930) /product="18S small subunit ribosomal RNA" intron 1481..2116 /note="group I" BASE COUNT 785 a 580 c 728 g 836 t 1 others BASE COUNT 237 a 101 c 110 g 212 t 3897 others ORIGIN 1 |caccaccag gagU||a--- -------(-- ---aacacaa ccaaaccaaa ccaagguuc- 61 ---------- ---------- --)------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- ---------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 -------|-- ----u|Gcuc cu--|----- ---------- ---|uaaa-- ---------- 781 ---------- ---------- --------(g caacaauu-- ---------- ---------- 841 ---------- ---------- ---------- ---------- ---------- -----)---- 901 ---------- ---------- ---------- ---------- ---------- -----uuuau 961 ----c--uac u|--a----- -----|gun- uu-------- gc-auau--- -----auau- 1021 ---aua---- ---------- ---------- ---------u ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 ---------- ---------- ---------- ---------- ---------- ---------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- ---------- ---------- -au-au---- 1561 ---------- ---------- ---------- ---------- ---------- ---------- 1621 ----auaugc --a--aagc| --AA|CACU- A-U-C|AAAU |UG--C-AGG |GAGU----| 1681 C-UC------ ---------- ---------- -|Uuucuuuc uuucuuucuc ucuuucuaua 1741 uauauauaua ua------ga gagagagaga gagagagaau --------ca a-|------g 1801 aaaa------ AA-UC|U-AC C|-------- ---------- ---------- ---------- 1861 ---|-gu-g- ca-c-a---- -u-ac-(aua uaga---aua aua------- ---------- 1921 --------ua a)--UA--UG --U-G-C-A- A-A|----|c c-c-u----- (aacucucuc 1981 uuucaaggag gagga---)- ---a-g-ag- g|-------U UA-U|GGU-A AAA-AU-GA- 2041 UU-uauuuc| -uuuu----- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- --GAG|Auga -|UC-UGCA| GCC|-AAAc- 2221 |ccau----- ------(--- ---------- ---------- ---------- ---------- 2281 ---------- ----)|-|-| -------uag uaguaguaau aauaaua--- ---------- 2341 (a-acu-auu cc-------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- --uauuauua 2461 uuauuauuau ua-----|-- ---------- augg|acGC| AGU|--CCA| CA-GACU-A| 2521 -GAU|GAU-A caG-UG|G|G CAGuauauau au-------- -(auau---- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------) -----auaua 2701 uauacUGUU- |UAA-GA-AA |UA-GUC|G| -|AC-----| ccu--|gccu uuauauuauu 2761 gauu(uuuuu uu-------- )gau---aua uauauauaua uaaaggcuuc cuucaacaaa 2821 aaaaaa-gag uguaggaaag cuc------- ---------- ---------- ---------- 2881 ---------- ---------- ---------- ----uucuuu uuuucucuuu uucuuuuuuc 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---|uuuuu- c---(--uuu 3121 a--------- ---------- ---------- ---------- ---------- ---------- 3181 ---------- ---------- -----)---g a-aaaa|--- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ---------- ---------- ---------- ---------- ---------- ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ----aagaaa gacaagagag aga---gaga 4021 gag|agagag agagacag|a ag-------- ---------- ---------- ---------( 4081 agcuagga-- ---------- ---------- ---------- ---------- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- ---------- ---------- ---cuu|--- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- -----auagg c--------- -----GU|G- -||gga-gcc ugcggc| // LOCUS Aca.l.9.1 4557 bp RNA RNA 07-MAY-1998 DEFINITION Acanthamoeba lenticulata strain 118. str. 118 18S small subunit ribosomal RNA gene, partial sequence. ACCESSION No information KEYWORDS No information. SOURCE Acanthamoeba lenticulata strain 118. str. 118 18S small subunit ribosomal RNA gene, partial sequence. ORGANISM Acanthamoeba lenticulata strain 118. REFERENCE 1 (bases 1 to 375) AUTHORS Ledee,D.R., Rodriguez-Zaragoza,S., Dean,C.L., Fuerst,P.A. and Byers,T.J. Stothard,D.R., Schroeder-Diedrich,J.M., Awwad,M.H., Gast,R.J., TITLE The evolutionary history of the genus Acanthamoeba and the identification of eight new 18S rRNA gene sequence types JOURNAL J. Eukaryot. Microbiol. 45 (1), 45-54 (1998) STANDARD No information COMMENTS Sequence information (bases 1 to 4557) Corresponding GenBank entry: U94736 LOCUS U94736 2934 bp DNA INV 07-MAY-1998 DEFINITION Acanthamoeba lenticulata strain 118 18S small subunit ribosomal RNA gene, partial sequence. ACCESSION U94736 NID g3115367 KEYWORDS . SOURCE Acanthamoeba lenticulata. ORGANISM Acanthamoeba lenticulata Eukaryota; Acanthamoebidae; Acanthamoeba. REFERENCE 1 (bases 1 to 2934) AUTHORS Stothard,D.R., Schroeder-Diedrich,J.M., Awwad,M.H., Gast,R.J., Ledee,D.R., Rodriguez-Zaragoza,S., Dean,C.L., Fuerst,P.A. and Byers,T.J. TITLE The evolutionary history of the genus Acanthamoeba and the identification of eight new 18S rRNA gene sequence types JOURNAL J. Eukaryot. Microbiol. 45 (1), 45-54 (1998) MEDLINE 98156136 REFERENCE 2 (bases 1 to 2934) AUTHORS Schroeder-Diedrich,J.M., Fuerst,P.A. and Byers,T.J. TITLE Unusual group I introns occur at 3 sites in nuclear 18S rRNA genes of Acanthamoeba lenticulata JOURNAL Unpublished REFERENCE 3 (bases 1 to 2934) AUTHORS Schroeder-Diedrich,J.M. TITLE Direct Submission JOURNAL Submitted (20-MAR-1997) Molecular Genetics, The Ohio State University, 484 W. 12th. Avenue, Columbus, OH 43210, USA FEATURES Location/Qualifiers source 1..2934 /organism="Acanthamoeba lenticulata" /strain="118; ATCC50706" /note="from the Institute of Hygiene and Epidemiology, Brussels, Belgium" /db_xref="taxon:29196" /db_xref="ATCC:50706" rRNA join(<1..1480,2121..>2934) /product="18S small subunit ribosomal RNA" intron 1481..2120 /note="group I" BASE COUNT 788 a 578 c 728 g 839 t 1 others BASE COUNT 239 a 100 c 111 g 214 t 3893 others ORIGIN 1 |caccaccag gagU||a--- -------(-- ---aacacaa ccaaaccaaa ccaagguuc- 61 ---------- ---------- --)------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- ---------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 -------|-- ----u|Gcuc cu--|----- ---------- ---|uaaa-- ---------- 781 ---------- ---------- --------(g caacaauu-- ---------- ---------- 841 ---------- ---------- ---------- ---------- ---------- -----)---- 901 ---------- ---------- ---------- ---------- ---------- -----uuuau 961 ----c--uac u|--a----- -----|gun- uu-------- gc-auau--- -----auau- 1021 ---aua---- ---------- ---------- ---------u ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 ---------- ---------- ---------- ---------- ---------- ---------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- ---------- ---------- -au-au---- 1561 ---------- ---------- ---------- ---------- ---------- ---------- 1621 ----auaugc --a--aagc| --AA|CACU- A-U-C|AAAU |UG--C-AGG |GAGU----| 1681 C-UC------ ---------- ---------- -|Uuucuuuc uuucuuucuc ucuuucuaua 1741 uauauauaua ua--gagaga gagagagaga gagagagaau --------ca a-|------g 1801 aaaa------ AA-UC|U-AC C|-------- ---------- ---------- ---------- 1861 ---|-gu-g- ca-c-a---- -u-ac-(aua uaga---aua aua------- ---------- 1921 --------ua a)--UA--UG --U-G-C-A- A-A|----|c c-c-u----- (aacucucuc 1981 uuucaaggag gagga---)- ---a-g-ag- g|-------U UA-U|GGU-A AAA-AU-GA- 2041 UU-uauuuc| -uuuu----- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- --GAG|Auga -|UC-UGCA| GCC|-AAAc- 2221 |ccau----- ------(--- ---------- ---------- ---------- ---------- 2281 ---------- ----)|-|-| -------uag uaguaguaau aauaaua--- ---------- 2341 (a-acu-auu cc-------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- --uauuauua 2461 uuauuauuau ua-----|-- ---------- augg|acGC| AGU|--CCA| CA-GACU-A| 2521 -GAU|GAU-A caG-UG|G|G CAGuauauau au-------- -(auau---- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------) -----auaua 2701 uauacUGUU- |UAA-GA-AA |UA-GUC|G| -|AC-----| ccu--|gccu uuauauuauu 2761 gauu(uuuuu uu-------- )gauau-aua uauauauaua uaaaggcuuc cuucaacaaa 2821 aaaaaa-gag uguaggaaag cuc------- ---------- ---------- ---------- 2881 ---------- ---------- ---------- ----uucuuu uuuuuucuuu uucuuuuuuc 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---|uuuuu- c---(--uuu 3121 a--------- ---------- ---------- ---------- ---------- ---------- 3181 ---------- ---------- -----)---g a-aaaa|--- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ---------- ---------- ---------- ---------- ---------- ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ----aagaaa gacaagagag aga---gaga 4021 gag|agagag aga--cag|a ag-------- ---------- ---------- ---------( 4081 agcuagga-- ---------- ---------- ---------- ---------- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- ---------- ---------- ---cuu|--- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- -----auagg c--------- -----GU|G- -||gga-gcc ugcggc| // LOCUS Aca.l.5.1 4557 bp RNA RNA 07-MAY-1998 DEFINITION AcantE.hamoeba lenticulata strain NJSP-3-2. str. sequence NJSP-3-2 18S small subunit ribosomal RNA gene, partial. ACCESSION No information KEYWORDS No information. SOURCE AcantE.hamoeba lenticulata strain NJSP-3-2. str. sequence NJSP-3-2 18S small subunit ribosomal RNA gene, partial. ORGANISM AcantE.hamoeba lenticulata strain NJSP-3-2. REFERENCE 1 (bases 1 to 375) AUTHORS Stothard,D.R., Schroeder-Diedrich,J.M., Awwad,M.H., Gast,R.J., Ledee,D.R., Rodriguez-Zaragoza,S., Dean,C.L., Fuerst,P.A. and Byers,T.J. TITLE identification of eight new 18S rRNA gene sequence types The evolutionary history of the genus Acanthamoeba and the JOURNAL J. Eukaryot. Microbiol. 45 (1), 45-54 (1998) STANDARD No information COMMENTS Sequence information (bases 1 to 4557) Corresponding GenBank entry: U94738 LOCUS U94738 2936 bp DNA INV 07-MAY-1998 DEFINITION Acanthamoeba lenticulata strain NJSP-3-2 18S small subunit ribosomal RNA gene, partial sequence. ACCESSION U94738 NID g3115369 KEYWORDS . SOURCE Acanthamoeba lenticulata. ORGANISM Acanthamoeba lenticulata Eukaryota; Acanthamoebidae; Acanthamoeba. REFERENCE 1 (bases 1 to 2936) AUTHORS Stothard,D.R., Schroeder-Diedrich,J.M., Awwad,M.H., Gast,R.J., Ledee,D.R., Rodriguez-Zaragoza,S., Dean,C.L., Fuerst,P.A. and Byers,T.J. TITLE The evolutionary history of the genus Acanthamoeba and the identification of eight new 18S rRNA gene sequence types JOURNAL J. Eukaryot. Microbiol. 45 (1), 45-54 (1998) MEDLINE 98156136 REFERENCE 2 (bases 1 to 2936) AUTHORS Schroeder-Diedrich,J.M., Fuerst,P.A. and Byers,T.J. TITLE Unusual group I introns occur at 3 sites in nuclear 18S rRNA genes of Acanthamoeba lenticulata JOURNAL Unpublished REFERENCE 3 (bases 1 to 2936) AUTHORS Schroeder-Diedrich,J.M. TITLE Direct Submission JOURNAL Submitted (20-MAR-1997) Molecular Genetics, The Ohio State University, 484 W. 12th. Avenue, Columbus, OH 43210, USA FEATURES Location/Qualifiers source 1..2936 /organism="Acanthamoeba lenticulata" /strain="NJSP-3-2; ATCC50429" /db_xref="taxon:29196" /db_xref="ATCC:50429" rRNA join(<1..1480,2123..>2936) /product="18S small subunit ribosomal RNA" intron 1481..2122 /note="group I" BASE COUNT 788 a 579 c 729 g 840 t BASE COUNT 240 a 100 c 111 g 216 t 3890 others ORIGIN 1 |caccaccag gagu||a--- -------(-- ---aacacaa ccaaaccaaa ccaagguuc- 61 ---------- ---------- --)------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- ---------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 -------|-- ----u|Gcuc cu--|----- ---------- ---|uaaa-- ---------- 781 ---------- ---------- --------(g caacaauu-- ---------- ---------- 841 ---------- ---------- ---------- ---------- ---------- -----)---- 901 ---------- ---------- ---------- ---------- ---------- -----uuuau 961 ----c--uac u|--a----- -----|guu- uu-------- uc-auau--- -----auau- 1021 ---aua---- ---------- ---------- ---------u ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 ---------- ---------- ---------- ---------- ---------- ---------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- ---------- ---------- -au-au---- 1561 ---------- ---------- ---------- ---------- ---------- ---------- 1621 ----auaugc --a--aagc| --AA|CACU- A-U-C|AAAU |UG--C-AGG |GAGU----| 1681 C-UC------ ---------- ---------- -|Uuucuuuc uuucuuucuc ucuuucuaua 1741 uauauauaua uauagagaga gagagagaga gagagagaau --------cg aa|------g 1801 aaaa------ AA-UC|U-AC C|-------- ---------- ---------- ---------- 1861 ---|-gu-g- ca-c-a---- -u-ac-(aua uaga---aua aua------- ---------- 1921 --------ua a)--uA--UG --U-G-C-A- A-A|----|c c-c-u----- (aacucucuc 1981 uuucaaggag gagga---)- ---a-g-ag- g|-------U UA-U|GGU-A AAA-AU-GA- 2041 UU-uauuuc| -uuuu----- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- --GAG|Auga -|UC-UGCA| GCC|-AAAc- 2221 |ccau----- ------(--- ---------- ---------- ---------- ---------- 2281 ---------- ----)|-|-| -------uag uaguaguaau aauaaua--- ---------- 2341 (a-acu-auu cc-------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- --uauuauua 2461 uuauuauuau ua-----|-- ---------- augg|acGC| AGU|--CCA| CA-GACU-A| 2521 -GAU|GAU-A caG-UG|G|G CAGuauauau au-------- -(auau---- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------) -----auaua 2701 uauacUGUU- |UAA-GA-AA |UA-GUC|G| -|AC-----| ccu--|gccu uuauauuauu 2761 gauu(uuuuu uu-------- )gau---aua uauauauaua uaaaggcuuc cuucaacaaa 2821 aaaaaaagag uguaggaaag cuc------- ---------- ---------- ---------- 2881 ---------- ---------- ---------- ----uucuuu uuuuuucuuu uucuuuuuuc 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---|uuuuu- c---(--uuu 3121 a--------- ---------- ---------- ---------- ---------- ---------- 3181 ---------- ---------- -----)---g a-aaaa|--- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ---------- ---------- ---------- ---------- ---------- ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ----aagaaa gacaagagag aga---gaga 4021 gag|agagag aga--cag|a ag-------- ---------- ---------- ---------( 4081 agcuagga-- ---------- ---------- ---------- ---------- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- ---------- ---------- ---cuu|--- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- -----auagg c--------- -----GU|G- -||gga-gcc ugcggc| // LOCUS Aca.l.6.1 4557 bp RNA RNA 16-MAR-1994 DEFINITION Acanthamoeba lenticulata.. ACCESSION No information KEYWORDS No information. SOURCE Acanthamoeba lenticulata. ORGANISM Acanthamoeba lenticulata. REFERENCE 1 (bases 1 to 375) AUTHORS Gast,R.J.;Fuerst,P.A.;Byers,T.J. TITLE Discovery of group I introns in the nuclear small subunit... JOURNAL Nucleic Acids Res. 22, 592-596 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4557) Corresponding GenBank entry: U02539 LOCUS ALU02539 656 bp DNA INV 25-MAY-1994 DEFINITION Acanthamoeba lenticulata PD2S ATCC# 30841 nuclear small subunit ribosomal DNA group I intron. ACCESSION U02539 NID g460092 VERSION U02539.1 GI:460092 KEYWORDS . SOURCE Acanthamoeba lenticulata. ORGANISM Acanthamoeba lenticulata Eukaryota; Acanthamoebidae; Acanthamoeba. REFERENCE 1 (bases 1 to 656) AUTHORS Gast,R.J., Fuerst,P.A. and Byers,T.J. TITLE Discovery of group I introns in the nuclear small subunit ribosomal RNA genes of of Acanthamoeba JOURNAL Nucleic Acids Res. 22, 592-596 (1994) MEDLINE 94173725 REFERENCE 2 (bases 1 to 656) AUTHORS Gast,R.J. TITLE Direct Submission JOURNAL Submitted (14-OCT-1993) Rebecca J. Gast, The Ohio State University, Molecular Genetics, 484 West 12th Avenue, Columbus, OH 43210, USA FEATURES Location/Qualifiers source 1..656 /organism="Acanthamoeba lenticulata" /strain="PD2S ATCC# 30841" /db_xref="taxon:29196" intron 1..656 /standard_name="nuclear small subunit ribosomal DNA group I intron" /note="Intron occurs in the joining region between stems 33 and 34 (formerly 31 and 32) in the nuclear srDNA secondary structure model." BASE COUNT 237 a 91 c 102 g 224 t 2 others BASE COUNT 238 a 93 c 106 g 225 t 3895 others ORIGIN 1 |~~~~~~~~~ ~~~~||a--- -------(-- ---aacacaa ccaaaccaaa ccaagguuc- 61 ---------- ---------- --)------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- ---------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 -------|-- ----u|Gcuc cu--|----- ---------- ---|uaaa-- ---------- 781 ---------- ---------- --------(g caacaauu-- ---------- ---------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- -----uuuau 961 ----c--uac u|--a----- -----|guu- uu-------- uu-auau--- -----auaua 1021 u----a---- ---------- ---------- ---------u au-------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 ---------- ---------- ---------- ---------- ---------- ---------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- ---------- ---------- -au-au---- 1561 ---------- ---------- ---------- ---------- ---------- ---------- 1621 ----auauau g-cA-AAGC| --AA|CACU- A-U-C|AAAU |UG--C-AGG |GAGU----| 1681 C-UC------ ---------- ---------- -|Uuucuuuc uuucuuuuuc gucguuuccu 1741 auauauauau auauau-aga gagagagaga gagagagaau c-------ga ag|------g 1801 aaaa------ AA-UC|U-AC C|-------- ---------- ---------- ---------- 1861 ---|-gu-g- ca-c-a---- -u-ac-(aua uacg---aau aana------ ---------- 1921 --------ua a)--uA--UG --U-G-C-A- A-A|----|c c-c-u----- (aacucucuc 1981 uuucaaggag gaggagga)- ---a-g-ag- g|-------U UA-U|GGUUA AAA-AU-GA- 2041 UUuuauuuc| -uuuu----- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- u-GAG|auug a|UC-UGCA| GCC|-AAAc- 2221 |ccau----- ------(--- ---------- ---------- ---------- ---------- 2281 ---------- ----)|-|-| -------uag uaguaguaau aauaaua--- ---------- 2341 (a-acu-auu ccuau----- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- --uauuauua 2461 uuauuauuau ua-----|-- ---------- aug-|acGC| AGU|--CCA| CA-GACU-A| 2521 -GAU|GAU-A CAG-UG|G|G CAGuauauau au-------- -(auau---- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---auauaua 2701 uauaCUNUu- |UAA-GA-AA |UA-GUC|G| -|AC-----| ccu--|gccu uuauauuauu 2761 gauu(uuuuu uu-------- )gau---aua uauauauaua uaaaggcuuc cuucaacaaa 2821 aaaaaaagag uguaggaaag cuc------- ---------- ---------- ---------- 2881 ---------- ---------- ---------- ----uucuuu uuuuuucuuu uucuuuuuuc 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---|uuuuu- c---(--uuu 3121 a--------- ---------- ---------- ---------- ---------- ---------- 3181 ---------- ---------- -----)---g a-aaaa|--- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ---------- ---------- ---------- ---------- ---------- ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ----aagaaa gacaagagag aga---gaga 4021 gag|agagag a----cag|a ag-------- ---------- ---------- ---------( 4081 agcuagga-- ---------- ---------- ---------- ---------- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- ---------- ---------- ---cuu|--- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- -----auagg c--------- -----GU|G- -||gga-gcc ug~~~~| // LOCUS Sel.c.1.3 4557 bp RNA RNA 28-JAN-191 DEFINITION Selenastrum capricornutum. ACCESSION No information KEYWORDS No information. SOURCE Selenastrum capricornutum. ORGANISM Selenastrum capricornutum. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 4557) Corresponding GenBank entry: AF169628 LOCUS AF169628 4099 bp DNA PLN 01-AUG-2000 DEFINITION Selenastrum capricornutum small subunit ribosomal RNA gene, complete sequence. ACCESSION AF169628 VERSION AF169628.1 GI:9622215 KEYWORDS . SOURCE Selenastrum capricornutum. ORGANISM Selenastrum capricornutum Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; Chlorellales; Selenastraceae; Selenastrum. REFERENCE 1 (bases 1 to 4099) AUTHORS Booton,G.C., Floyd,G.L. and Fuerst,P.A. TITLE Multiple group I introns detected in the nuclear small subunit rDNA of the autosporic green algae Selenastrum capricornutum JOURNAL unpublished REFERENCE 2 (bases 1 to 4099) AUTHORS Booton,G.C., Floyd,G.L. and Fuerst,P.A. TITLE Direct Submission JOURNAL Submitted (16-JUL-1999) Molecular Genetics, The Ohio State University, 484 W. 12th Ave., Columbus, OH 43210, USA FEATURES Location/Qualifiers source 1..4099 /organism="Selenastrum capricornutum" /strain="UTEX 1648" /db_xref="taxon:118073" rRNA join(1..149,543..557,955..1956,2342..2438,2771..2845, 3284..3713,4075..4099) /product="small subunit ribosomal RNA" intron 150..542 /note="group I" intron 558..954 /note="group I" intron 1957..2341 /note="group I" intron 2439..2771 /note="group I" intron 2846..3283 /note="group I" intron 3714..4074 /note="group I" BASE COUNT 1028 a 892 c 1084 g 937 t 158 others BASE COUNT 116 a 102 c 112 g 78 t 4149 others ORIGIN 1 |caccaccag gcgU||ua-- -------(-- ---aagu--- uugcuc---- ---------- 61 ---------- ---------- --)------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- ---------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 -------|-- ---ua|Gcgc cug-|----- ---------a aa-|gccgac cug------- 781 ---------- ---------- --------(c aaaa------ ---------- ---------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- -----ca-g- 961 ----g--ucg u|--ca---- -----|guc- aa-------- uc-------- ---------- 1021 --(auc---- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 ---------- ---------- ---------- ---------- ---------- ---------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- ---------- -)-------- ---------- 1561 ---------- ---------- ---------- ---------- ---------- ---------- 1621 --------GA --U--UGGC| --AA|CACU- G-U-C|AAAU |UG--C-CUG |GAAA----| 1681 U-CC------ ---------- ---------- -|cg------ ---------- ---------- 1741 ---------- ---------- ---------- ---------- ------caaa g--------U 1801 CU-------- CU-GC|C-AC C|-------- ---------- ---------- ---------- 1861 ---|-gc-ca ac-u-g---- -a-uu-(cAA AA-------- ---------- ---------- 1921 ---------- -)-AAU--CG --Gca-U-G- G-C|A---|C C-U-U-G-GU (uaacu---- 1981 ---------- --------)G CC-A-A--G- G|-------G UG-U|GGU-A AAA-GA-GC- 2041 AG--A-GA-- -acag----- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- --GGA|-UGA -|UG-GGCA| GCC|-AA--- 2221 |GUCC----- ------(--- ---------- ---------- ---------- ---------- 2281 ---------- ----)|-|U| AA--c-|ggc aaac------ ---------- ---------- 2341 (a-cuu-c-- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- -------|-- 2461 ----guu-ug cca|A|U|-- ---------- GGAC|--GC| AGU|--UCA| CA-GACU-A| 2521 -AAU|GGC-A --G-UG|G|G UUUgugc--- ---------- -(caau---- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 gcacGAGCC- |UAA-GA-UA |UA-GUC|G| -|gc------ cc----ccac c--------- 2761 ----(-GAGA ---------- ---------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---------- ---------- 2881 ---------- -g--g---g- ---------- --|-cucaca gg-------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- -|----agga a--|gcuga- au--(--ga- 3121 ---------- ---------- ---------- ---------- ---------- ---------- 3181 ---------- ---------- -----)--au u-cggc|--- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ---------- ---------- ---------- ---------- ---------- ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- --|-ggaga- g--|------ ---------- --c---cugu 4021 ggg|------ --------|a agcggauuga ---------- ---------- ---------( 4081 uac------- ---------- ---------- ---------- ---------- ---------- 4141 -)-------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- --------|- ----ucaauc u-gcuu|--- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- -----ggaac a--------| -----ag|G- -||gga-gcc ugcnnc| // LOCUS Sce.p.1.2 4557 bp RNA RNA 22-SEP-1995 DEFINITION Scenedesmus pupukensis.; 18S ribosomal RNA; 18S rRNA gene. ACCESSION X91267 KEYWORDS 18S ribosomal RNA; 18S rRNA gene. SOURCE Scenedesmus pupukensis. ORGANISM Scenedesmus pupukensis. REFERENCE 1 (bases 1 to 2623) AUTHORS Huss,V.A.R., Schaefer,M., Huemmer,C. and Kessler,E. TITLE (Chlorococcales, Chlorophyta) Physiological, biochemical and molecular characters of some representatives of the three subgenera of Scenedesmus JOURNAL Unpublished STANDARD No information REFERENCE 2 (bases 1 to 2623) AUTHORS Huss,V.A.R. TITLE Direct Submission JOURNAL Submitted (10-SEP-1995) to the EMBL/GenBank/DDBJ databases. V.A.R. Huss, Inst.f. Botanik und Pharmazeut. Biologie, Univ. Erlangen, Staudtstr. 5, D- 91058 Erlangen, FRG STANDARD No information COMMENTS Sequence information (bases 1 to 4557) Corresponding GenBank entry: X91267 NCBI gi: 995658 BASE COUNT 124 a 90 c 114 g 96 t 4133 others ORIGIN 1 |caccaccag gcgU||---- -------(-- --uaag-uga uuagcucuag cgccagugag 61 gaagagauuc cuu------- --)------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- ---------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 ---------- -----|Gcuc c---|----- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- ---------- ---------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 ---------- ---------- ---------- ---------- ---------- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 ---------- ---------- ---------- ---------- ---------- ---------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- ---------- ---------- ---------- 1561 ---------- ---------- ---------- ---------- ---------- ---------- 1621 ---------- ---------- ---A|CACU- G-U-C|AAAU |UG--C-GGG |AAAA----| 1681 U-CC------ ---------- ---------- -|U------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- --------AA AG|------C 1801 UC-------- UA-UC|U-AC C|-------- ---------- ---------- ---------- 1861 ---|AAG-C- CA-A-C---- -G-UG-(aAA A--------- ---------- ---------- 1921 ---------- -)-CAU-aGU --U-G-G-U- G-G|----|C C-G-G-G-GU (-aaug---- 1981 ---------- --------)A CC-U-A--G- G|-------G UA-U|GGU-A AAA-AC-GA- 2041 UA--G-AG-| -A-------- ------|ug- ---------- ---------- --(aa-c--- 2101 ----)----- ---------- -ca|-----a u|-------- ---------- ---------- 2161 ---------- ---------- ---------- --GGA|-UUA -|UC-CGCA| GCC|-AA--- 2221 |GUCC----- ------(--- ---------- ---------- ---------- ---------- 2281 ---------- ----)|-|U| AA----|gug cuuuc----- ---------- ---------- 2341 (u-uua-uuu ---------- ---------- ---------- ---------- ---------- 2401 -------)-- ---------- ---------- ---------- ---------- -------|-- 2461 ---gaga-gc au-|A|U|-- ---------- GGAU|--GC| AGU|--UCA| CA-GACU-A| 2521 -AAU|GGC-A --G-UG|G|G CAuugau--- ---------- -(gcaa---- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 aucagUGCU- |UAA-GA-UA |UA-GUC|G| -|GC-----| cc---|cuac c--------- 2761 ----(-GAGA ---------- )--------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---------- ---------- 2881 --|------- -g--g-u-a- g|-------- --|-ccaaua gg-------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- -|----agga a--|gca--- ----(--cau 3121 aau------- ---------- ---------- ---------- ---------- ---------- 3181 ---------- ---------- -----)---- ---gcu|--- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ---------- ---------- ---------- ---------- ---------- ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- --|--gaga- g--|------ ---------- --c---cuau 4021 ugg|------ --------|a cauu-g---- ---------- ---------- ---------( 4081 cgcuaauacu gcuuggagca aauccuggca gggcucuuag gagccug--- ---------- 4141 -)-------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- --------|- ---------c a-augu|--- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ----ggaaua a--------| -----GC|G- -||gga-gcc ugcggc| // LOCUS Ooc.h.1.1 4557 bp RNA RNA 28-JAN-191 DEFINITION Oocystis heteromucosa. ACCESSION No information KEYWORDS No information. SOURCE Oocystis heteromucosa. ORGANISM Oocystis heteromucosa. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 4557) Corresponding GenBank entry: AF228689 LOCUS AF228689 2252 bp DNA PLN 17-APR-2000 DEFINITION Oocystis heteromucosa 18S ribosomal RNA gene, partial sequence. ACCESSION AF228689 VERSION AF228689.1 GI:7578834 KEYWORDS . SOURCE Oocystis heteromucosa. ORGANISM Oocystis heteromucosa Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; Oocystaceae; Oocystis. REFERENCE 1 (bases 1 to 2252) AUTHORS Hepperle,D., Hegewald,E. and Krienitz,L. TITLE Phylogenetic Position of Oocystaceae (Chlorophyta) JOURNAL Unpublished REFERENCE 2 (bases 1 to 2252) AUTHORS Hepperle,D., Hegewald,E. and Krienitz,L. TITLE Direct Submission JOURNAL Submitted (26-JAN-2000) Dep. Stratified Lakes, Institute of Freshwater Ecology and Inland Fisheries, Alte Fischerhuette 2, Stechlin, Brandenburg 16775, Germany FEATURES Location/Qualifiers source 1..2252 /organism="Oocystis heteromucosa" /strain="SAG 1.99" /db_xref="taxon:120747" rRNA join(<1..1153,1644..>2252) /product="18S ribosomal RNA" BASE COUNT 567 a 500 c 632 g 551 t 2 others BASE COUNT 144 a 115 c 146 g 109 t 4043 others ORIGIN 1 |caccaccag gcgU||ua-- -------(-- --a---au-- ---------- agcuc----- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- ---------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 -------|-- ---ua|Gcgc c---|----- --------ca ac-|AGUGCa gg-------- 781 ---------- ---------- --------(u ugcaac---- ---------- ---------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- -----cc-u- 961 ----G--UGC U|--A----- -----|GUG- GG-------- ac-agua--- -----g---- 1021 --(uuu---- ---------- ---------- ---------g ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 ---------- ---------- ---------- ---------- ---------- ---------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- ---------- -)-------- -----u---- 1561 ---------- ---------- ---------- ---------- ---------- ---------- 1621 ----uacagu --C--CCGC| --GA|CACU- G-U-C|AAAU |UG--C-GGG |GAAG----| 1681 U-CC------ ---------- ---------- -|U------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- --------AA AG|------C 1801 UC-------- AUaCG|U-AC C|-------- ---------- ---------- ---------- 1861 ---|AAG-G- CA-G-G---- -U-UG-(GAA A--------- ---------- ---------- 1921 ---------- -)-CAA--UU --U-G-C-U- G-G|----|C C-C-C-A-GU (uaaca---- 1981 ---------- ---------G CU-G-G--G- G|-------G UA-U|GGU-A AGA-AC-CGa 2041 AU--G-AG-| -auga----- ------|ucu gc-------- ---------- --(-a-ua-- 2101 ----)----- --------gc agu|--gaaa u|-------- ---------- ---------- 2161 ---------- ---------- ---------- --GGA|-UAA -|UC-CGCA| GCC|-AA--- 2221 |GCCC----- ------(--- ---------- ---------- ---------- ---------- 2281 ---------- ----)|-|U| AA----|ggg ca-------- ---------- ---------- 2341 (g-ca----- ---------- ---------- ---------- ---------- ---------- 2401 -------)-- ---------- ---------- ---------- ---------- -------|-- 2461 ------u-gc cu-|A|U|-- ---------- GGGU|--GC| AGU|--UCA| CA-GACU-A| 2521 -AAU|GGC-A --G-UG|G|G Cuugcu---- ---------- -(gacaacua ucacaucagu 2581 auuaacauug uugauaaaau acugaugcga aaguuuaga- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 -agcuugCU- |UAA-GA-UA |UA-GUC|G| -|GG-----| ccg--|cucc ---------- 2761 ----(gGAGA ---------- )--------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---------- ---------- 2881 --|------- ----g-g-a- g|a------- --|-ccuuau ggg------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- -|----agga c--|guga-- ----(--aaa 3121 ---------- ---------- ---------- ---------- ---------- ---------- 3181 ---------- ---------- -----)---- --ucac|--- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ---------- ---------- ---------- ---------- ---------- ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- --|-ugaga- g--|------ ---------- -cc---caua 4021 agg|------ ----g---|a cu-------- ---------- ---------- ---------( 4081 gggu------ ---------- ---------- ---------- ---------- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- --------|- ---------- ---agu|--- ---------| agcuauuggg 4261 gcaacccucu agcggcacuu caguagaaga gccuccaguc c--------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ----ggagga a--------| -----CC|G- -||gga-gcc uguggc| // LOCUS Sce.pr.1.1 4557 bp RNA RNA 22-SEP-1995 DEFINITION Scenedesmus producto-capitatus.; 18S ribosomal RNA; 18S rRNA gene. ACCESSION X91266 KEYWORDS 18S ribosomal RNA; 18S rRNA gene. SOURCE Scenedesmus producto-capitatus. ORGANISM Scenedesmus producto-capitatus. REFERENCE 1 (bases 1 to 2232) AUTHORS Huss,V.A.R., Schaefer,M., Huemmer,C. and Kessler,E. TITLE (Chlorococcales, Chlorophyta) Physiological, biochemical and molecular characters of some representatives of the three subgenera of Scenedesmus JOURNAL Unpublished STANDARD No information REFERENCE 2 (bases 1 to 2232) AUTHORS Huss,V.A.R. TITLE Direct Submission JOURNAL Submitted (10-SEP-1995) to the EMBL/GenBank/DDBJ databases. V.A.R. Huss, Inst.f. Botanik und Pharmazeut. Biologie, Univ. Erlangen, Staudtstr. 5, D- 91058 Erlangen, FRG STANDARD No information COMMENTS Sequence information (bases 1 to 4557) Corresponding GenBank entry: X91266 NCBI gi: 995716 BASE COUNT 130 a 111 c 135 g 86 t 4095 others ORIGIN 1 |caccaccag gcgU||ua-- -------(-- --augcugaa ---------- agcuc----- 61 ---------- ---------- --)------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- ---------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 -------|-- ---ua|Gcgc c---|----- ---------- ---|AGUGAg ggg------- 781 ---------- ---------- --------(g aaa------- ---------- ---------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ----ccu-c- 961 ----U--UGC U|--A----- -----|GUC- GA-------- uu-gu----- ---------- 1021 --(gaa---- ---------- ---------- ---------g ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 ---------- ---------- ---------- ---------- ---------- ---------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- ---------- -)-------- ---------- 1561 ---------- ---------- ---------- ---------- ---------- ---------- 1621 ------gcag --U--CGGC| --AA|CAUU- C-U-C|AAAU |UG--C-GGG |AAAC----| 1681 U-CC------ ---------- ---------- -|U------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- --------AA AG|------C 1801 UU-------- GC-AC|U-AC C|-------- ---------- ---------- ---------- 1861 ---|AAA-C- UA-G-G---- -G-UG-(GAA A--------- ---------- ---------- 1921 ---------- -)-CAC-aCC --U-A-G-U- G-G|----|C C-A-G-G-GU (-aaug---- 1981 ---------- --------)A CC-U-C--G- G|-------G UA-U|GGU-A AAA-AC-GU- 2041 GC--A-AG-| -Auga----- ------|ccu guu------- ---------- --(-acca-- 2101 ----)----- -------aac agg|--aaaa u|-------- ---------- ---------- 2161 ---------- ---------- ---------- --GGA|-CAA -|CC-UGCA| GCC|-AAg-- 2221 |uccu----- ------(--- ---------- ---------- ---------- ---------- 2281 ---------- ----)|-|A| AA----|caa cc-------- ---------- ---------- 2341 (u-aau---- ---------- ---------- ---------- ---------- ---------- 2401 -------)-- ---------- ---------- ---------- ---------- -------|-- 2461 ------g-gu ug-|C|A|-- ---------- AGGA|ugca| GGU|--UCA| CA-GACU-A| 2521 -AAU|GGG-A --A-UG|G|G CAgagacc-- ---------- -(aguaaac- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------g 2701 gugcaUGCU- |UAA-GA-UA |UA-GUC|G| -|GC-----| cc---|cuac c--------- 2761 ----(-GAGA ---------- )--------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---------- ---------- 2881 --|------- -g--g-u-a- g|-------- --|-ccauug gg-------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- -|----agua ---|caccg- g---(--auc 3121 ca-------- ---------- ---------- ---------- ---------- ---------- 3181 ---------- ---------- -----)---c c-ggug|--- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ---------- ---------- ---------- ---------- ---------- ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- --|--gaga- g--|------ ---------- --c---ccag 4021 ugg|------ --------|a cguu-g---- ---------- ---------- ---------( 4081 cgauaguacu gcuuggcgng agccggucag ggccauucgu gccug----- ---------- 4141 -)-------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- --------|- ---------c a-acgu|--- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ----ggaacu a--------| -----GC|G- -||gga-gcc ugcggc| // LOCUS Sch.s.1.1 4557 bp RNA RNA 28-JAN-191 DEFINITION Schroederia setigera. ACCESSION No information KEYWORDS No information. SOURCE Schroederia setigera. ORGANISM Schroederia setigera. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 4557) Corresponding GenBank entry: AF277650 LOCUS AF277650 2147 bp DNA PLN 25-JUL-2000 DEFINITION Schroederia setigera 18S ribosomal RNA gene, partial sequence. ACCESSION AF277650 VERSION AF277650.1 GI:9438166 KEYWORDS . SOURCE Schroederia setigera. ORGANISM Schroederia setigera Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Sphaeropleales; Sphaeropleaceae; Schroederia. REFERENCE 1 (bases 1 to 2147) AUTHORS Buchheim,M.A. and Buchheim,J.A. TITLE Phylogeny of the Chlorophyceae With Special Reference to the Sphaeropleaceae: A Study of 18S and 28S rRNA Gene Sequences JOURNAL Unpublished REFERENCE 2 (bases 1 to 2147) AUTHORS Buchheim,M.A. and Buchheim,J.A. TITLE Direct Submission JOURNAL Submitted (14-JUN-2000) Department of Biological Science, The University of Tulsa, 600 South College Avenue, Tulsa, OK 74104-3189, USA FEATURES Location/Qualifiers source 1..2147 /organism="Schroederia setigera" /strain="UTEX LB 2454" /db_xref="taxon:132188" /note="Intron" rRNA <1..>2147 /product="18S ribosomal RNA" intron 1129..1575 BASE COUNT 556 a 458 c 582 g 543 t 8 others BASE COUNT 124 a 116 c 135 g 93 t 4089 others ORIGIN 1 |caccaccan gcgU||ua-- -------(-- --a-gucauu ---------- -gcuc----- 61 ---------- ---------- --)------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- ---------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 -------|-- ---ua|Gcgc c---|----- ---------- ---|AGUGgc cca------- 781 ---------- ---------- --------(g aaa------- ---------- ---------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ----ugg-g- 961 ----C--UGC U|--A----- -----|GUU- GG-------- gc-aagu--- -----gu--- 1021 --(gcg---- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 ---------- ---------- ---------- ---------- ---------- ---------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- ---------- -)-------- ----gc---- 1561 ---------- ---------- ---------- ---------- ---------- ---------- 1621 ----acuugc --C--CGGC| --AA|CACC- U-U-C|AAAU |UG--C-UGG |AAAA----| 1681 C-UC------ ---------- ---------- -|U------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- --------AA AG|------C 1801 CC-------- UG-CA|U-AC C|-------- ---------- ---------- ---------- 1861 ---|AAA-G- UA-U-G---- AC-UG-(GAA A--------- ---------- ---------- 1921 ---------- -)-CAG--CA --U-G-C-U- G-G|----|C C-A-G-G-UU (-aac----- 1981 ---------- --------)A AC-C-U-CG- G|-------G UA-C|GGU-G ACA-AU-UG- 2041 CA--GCGG-| -auga----- ------|gau ggg------- ---------- --(-cuca-- 2101 ----)----- -------ccc auc|--gaaa u|-------- ---------- ---------- 2161 ---------- ---------- ---------- --GGG|-UAA -|CC-AGCA| GCC|-AAg-- 2221 |uccu----- ------(--- ---------- ---------- ---------- ---------- 2281 ---------- ----)|-|A| AA----|cau gac------- ---------- ---------- 2341 (g-ugu-g-- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 -----gu-ca ug-|c|a|-- ---------- UGGA|-ugc| AGU|--UCA| CA-GACU-A| 2521 -AAU|GGA-G --G-UG|G|G Cugucg---- ---------- -(uuu----- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 -cgacgGCU- |UAA-GA-UA |UA-GUC|G| -|GC-----| cc---|auac c--------- 2761 ----(-GAGA ---------- )--------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---------- ---------- 2881 --|------- -g--g-u-a- u|-------- --|-ucggua gg-------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- -|----agga ag-|cgauc- g---(--aaa 3121 ---------- ---------- ---------- ---------- ---------- ---------- 3181 ---------- ---------- -----)---c g-aucg|--- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ---------- ---------- ---------- ---------- ---------- ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------a cu|--gaga- g--|------ ---------- --c---cuau 4021 cga|------ ----g---|- ---------- ---------- ---------- ---------( 4081 cacugcuuag uacuacuugg a(gcaa)ucc aagcagggcu ugcaccaugg ugcagcnugc 4141 annc------ ---------- ---------- ---------- ---------- ---------- 4201 ---------- ---------- ---------- ---------- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ----ggaauc a--------| -----GC|G- -||gga-gcc ugcggc| // LOCUS Pla.b.E.2 4557 bp RNA RNA 21-NOV-1995 DEFINITION Plasmodiophora brassicae.. ACCESSION No information KEYWORDS No information. SOURCE Plasmodiophora brassicae. ORGANISM Plasmodiophora brassicae. REFERENCE 1 (bases 1 to 2232) AUTHORS Castlebury,L.A. and Domier,L.L. TITLE contain three introns Small subunit ribosomal RNA genes of Plasmodiophora brassicae JOURNAL Unpublished STANDARD No information COMMENTS Sequence information (bases 1 to 4557) Corresponding GenBank entry: U18981 LOCUS PBU18981 3026 bp DNA INV 21-NOV-1995 DEFINITION Plasmodiophora brassicae small subunit ribosomal RNA gene. ACCESSION U18981 NID g1066346 VERSION U18981.1 GI:1066346 KEYWORDS . SOURCE Plasmodiophora brassicae. ORGANISM Plasmodiophora brassicae Eukaryota; Plasmodiophorida; Plasmodiophoridae; Plasmodiophora. REFERENCE 1 (bases 1 to 3026) AUTHORS Castlebury,L.A. and Domier,L.L. TITLE Small subunit ribosomal RNA genes of Plasmodiophora brassicae contain three introns JOURNAL Unpublished REFERENCE 2 (sites) AUTHORS Castlebury,L.A. and Domier,L.L. TITLE Small subunit ribosomal RNA gene phylogeny of Plasmodiophora brassicae JOURNAL Unpublished REFERENCE 3 (bases 1 to 3026) AUTHORS Castlebury,L.A. TITLE Direct Submission JOURNAL Submitted (21-DEC-1994) Lisa A. Castlebury, National Center for Toxicological Research, Division of Microbiology, 3900 NCTR Drive, Jefferson, AR 72079, USA FEATURES Location/Qualifiers source 1..3026 /organism="Plasmodiophora brassicae" /specific_host="Brassica spp." /db_xref="taxon:37360" /lab_host="Brassica pekinensis (Lour.) Rupr." /dev_stage="resting spores" primer_bind complement(1..21) /citation=[1] /citation=[2] exon 1..566 /citation=[1] /citation=[2] rRNA join(1..566,955..1582,1966..2556,2999..3026) /evidence=experimental /product="small subunit ribosomal RNA" intron 567..954 /citation=[1] exon 955..1582 /citation=[1] /citation=[2] intron 1583..1965 /citation=[1] exon 1966..2556 /citation=[1] /citation=[2] intron 2557..2998 /citation=[1] exon 2999..3026 /citation=[1] /citation=[2] primer_bind 3003..3026 /citation=[1] /citation=[2] BASE COUNT 757 a 680 c 843 g 744 t 2 others BASE COUNT 103 a 114 c 115 g 76 t 4149 others ORIGIN 1 |caccaccag gagU||gga- -------(-- --accaugcg uguucaugcc ccgccgcgag 61 cagca----- ---------- --)------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- ---------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 -------|-- --ucc|Gcuc c---|----- --------ga au-|AGCA-- ---------- 781 gcug-(gaaa --)-c-agu- --------(g aggugg---g ucggguccuu gu-------- 841 --aaaacaaa cc-------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 -------UGC U|--A----- -----|GUG- CC-------- ga-cgga--- ---------- 1021 --(cga---- ---------- ---------- ---------g ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 ---------- ---------- ---------- ---------- ---------- ---------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- ---------- -)-------- ---------- 1561 ---------- ---------- ---------- ---------- ---------- ---------- 1621 ----uucguc --G--ACAC| --GA|CAUC- G-U-C|AAAU |UG--C-GGG |AACC----| 1681 U-CC------ ---------- ---------- -|U------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- --------AA CA|------C 1801 UU-------- CA-CC|U-AC C|-------- ---------- ---------- ---------- 1861 ---|AAG-U- GC-U-g---- -c-uac(gcg ugug------ ---------- ---------- 1921 ---------- c)gcaa--aa --G-C-A-C- G-G|----|C C-GAG-c--- (uaauc---- 1981 ---------- --------)- -a-C-C-UG- G|-------G UA-U|GGU-A ACA-AC-GG- 2041 UG--A-AG-| -Auauauc-- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------a u|-------- ---------- ---------- 2161 ---------- ---------- ---------- --GGA|-CGA -|UC-CGCA| GCC|-AAg-- 2221 |ucc------ ------(--- ---------- ---------- ---------- ---------- 2281 ---------- ----)|-|U| AC----|guc gaa------- ---------- ---------- 2341 (g-uuc-a-- ---------- ---------- ---------- ---------- ---------- 2401 -------)-- ---------- ---------- ---------- ---------- -------|-- 2461 -----uu-cg au-|A|U|-- ---------- -gga|-acg| GGU|--UCA| GA-GACU-A| 2521 -GAU|GGC-G --G-UG|G|G C--------- ---------- -(cucgcgcc uc-------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ------GCU- |UAA-GA-UA |UA-GUC|C| -|AA-----| uccgguccag cgc------- 2761 ----(-aaaa ---------- )--------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---------- ---------- 2881 ---------g cg--c-c-g- g|-------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---------- ---------- 3121 ---------- ---------- ---------- ---------- ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ---------- ---------- ---------- ---------- ---------- ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- ---------- 4021 ---------- ---------- ---------- ---------- ---------- ---------- 4081 ---------- ---------- ---------- ---------- ---------- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- ---------- ---------- ---------- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---caacgau a--------| -----UU|G- -||gga-gcc ugcggc| // LOCUS Cep.s.1.1 4557 bp RNA RNA 08-JUN-1999 DEFINITION Cephalotheca sulfurea. str. CBS 135.34 18S ribosomal RNA gene, partial sequence. ACCESSION No information KEYWORDS No information. SOURCE Cephalotheca sulfurea. str. CBS 135.34 18S ribosomal RNA gene, partial sequence. ORGANISM Cephalotheca sulfurea. REFERENCE 1 (bases 1 to 2232) AUTHORS Suh,S.-O. and Blackwell,M. TITLE Group I introns in nuclear small subunit ribosomal RNA genes of some ascomycetous fungi JOURNAL Unpublished STANDARD No information COMMENTS Sequence information (bases 1 to 4557) Corresponding GenBank entry: AF096173 LOCUS AF096173 1545 bp DNA PLN 22-NOV-1999 DEFINITION Cephalotheca sulfurea strain CBS 135.34 18S ribosomal RNA gene, partial sequence. ACCESSION AF096173 VERSION AF096173.1 GI:5006377 KEYWORDS . SOURCE Cephalotheca sulfurea. ORGANISM Cephalotheca sulfurea Eukaryota; Fungi; Ascomycota; Eurotiales; Cephalothecaceae; Cephalotheca. REFERENCE 1 (bases 1 to 1545) AUTHORS Suh,S.-O. and Blackwell,M. TITLE Molecular phylogeny of the cleistothecial fungi placed in Cephalothecaceae and Pseudeurotiaceae JOURNAL Mycologia 91 (5), 836-848 (1999) REFERENCE 2 (bases 1 to 1545) AUTHORS Suh,S.-O. and Blackwell,M. TITLE Group I introns in nuclear small subunit ribosomal RNA genes of some ascomycetous fungi JOURNAL Unpublished REFERENCE 3 (bases 1 to 1545) AUTHORS Suh,S.-O. and Blackwell,M. TITLE Direct Submission JOURNAL Submitted (01-OCT-1998) Biological Sciences, Louisiana State University, Baton Rouge, LA 70803, USA FEATURES Location/Qualifiers source 1..1545 /organism="Cephalotheca sulfurea" /strain="CBS 135.34" /db_xref="taxon:95345" rRNA join(<1..1100,1541..>1545) /product="18S ribosomal RNA" intron 1101..1540 /note="group I" BASE COUNT 387 a 318 c 403 g 381 t 56 others BASE COUNT 108 a 107 c 138 g 105 t 4099 others ORIGIN 1 |caccaccag gggU||a--- -------(-- --aac---cu aa-------- ccgcaguuaa 61 cuc------- ---------- --)------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- ---------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 -------|-- ----u|Gccc c---|----- --------gg aa-|AGCA-- ---------- 781 gccc-gauga aaagg-gu-- --------(u aguggu---g uuccucagcg cucggaugcc 841 ggcgcuggaa cuaag----- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 -------UGC U|--A----- -----|GUC- CGCC------ uc-ggga--- -----guc-- 1021 --(ugu---- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 ---------- ---------- ---------- ---------- ---------- ---------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- ---------- -)-------- gac-uc---- 1561 ---------- ---------- ---------- ---------- ---------- ---------- 1621 ----cccggG --C--GGGC| --GA|CACC- U-U-C|AAAU |UG--C-GGG |AAGU----| 1681 U-CC------ ---------- ---------- -|U------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- --------AA AG|------C 1801 UC-------- GU-GU|G-AC U|-------- ---------- ---------- ---------- 1861 ---|AAC-C- GG-C-G---- -u-GC-(GAA A--------- ---------- ---------- 1921 ---------- -)-GCu--CG --U-C-G-G- G-G|----|C C---G-G-U- (uaauc---- 1981 ---------- --------)- GC-C-acaG- G|-------g g---|AGU-A ACA-CU-AC- 2041 GC--G-AG-| -A-------- ------|ug- ---------- ---------- --(cu-a--- 2101 ---)------ ---------- -ca|-----a u|-------- ---------- ---------- 2161 ---------- ---------- ---------- --GGA|-UGA -|UC-CGCA| GCC|-AAGc- 2221 |UCC------ ------(--- ---------- ---------- ---------- ---------- 2281 ---------- ----)|-|U| a-----|aac ---------- ---------- ---------- 2341 (g-cca-guc acug------ ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- -------|-- 2461 ---------g uu-|A|C|-- ---------- -GGA|-GAA- GGU|--UCA| GA-GACU-U| 2521 -GAU|GGA-G --G-UG|G|U UGU-uucacu gaaga----- -(uuuggguu uguuggcgua 2581 cauucaauau uuggaggggu uucccacggu ggguguacaa uacaauuuga ggu------- 2641 ---------- ---------- ---------- ---------- ---------- ---uuuuugg 2701 ugcuACGGc- |UAA-GA-UA |AA-cUU|-| -|-------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---------- ---------- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---------- ---------- 3121 ---------- ---------- ---------- ---------- ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ---------- ---------- ---------- ---------- ---------- ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- ---------- 4021 ---------- ---------- ---------- ---------- ---------- ---------- 4081 ---------- ---------- ---------- ---------- ---------- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- ---------- ---------- ---------- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -----aa--| -----AC|g- -||gga-cg~ ~~~~~~| // LOCUS Con.r.1.1 4557 bp RNA RNA 08-JUN-1999 DEFINITION Connersia rilstonii. str. CBS 537.74 18S ribosomal RNA gene, partial sequence. ACCESSION No information KEYWORDS No information. SOURCE Connersia rilstonii. str. CBS 537.74 18S ribosomal RNA gene, partial sequence. ORGANISM Connersia rilstonii. REFERENCE 1 (bases 1 to 2232) AUTHORS Suh,S.-O. and Blackwell,M. TITLE of some ascomycetous fungi Group I introns in nuclear small subunit ribosomal RNA genes JOURNAL Unpublished STANDARD No information COMMENTS Sequence information (bases 1 to 4557) Corresponding GenBank entry: AF096174 LOCUS AF096174 1490 bp DNA PLN 22-NOV-1999 DEFINITION Connersia rilstonii strain CBS 537.74 18S ribosomal RNA gene, partial sequence. ACCESSION AF096174 VERSION AF096174.1 GI:5006378 KEYWORDS . SOURCE Connersia rilstonii. ORGANISM Connersia rilstonii Eukaryota; Fungi; Ascomycota; Eurotiales; Pseudeurotiaceae; Connersia. REFERENCE 1 (bases 1 to 1490) AUTHORS Suh,S.-O. and Blackwell,M. TITLE Molecular phylogeny of the cleistothecial fungi placed in Cephalothecaceae and Pseudeurotiaceae JOURNAL Mycologia 91 (5), 836-848 (1999) REFERENCE 2 (bases 1 to 1490) AUTHORS Suh,S.-O. and Blackwell,M. TITLE Group I introns in nuclear small subunit ribosomal RNA genes of some ascomycetous fungi JOURNAL Unpublished REFERENCE 3 (bases 1 to 1490) AUTHORS Suh,S.-O. and Blackwell,M. TITLE Direct Submission JOURNAL Submitted (01-OCT-1998) Biological Sciences, Louisiana State University, Baton Rouge, LA 70803, USA FEATURES Location/Qualifiers source 1..1490 /organism="Connersia rilstonii" /strain="CBS 537.74" /db_xref="taxon:95320" rRNA join(<1..1143,1486..>1490) /product="18S ribosomal RNA" intron 1144..1485 /note="group I" BASE COUNT 375 a 322 c 386 g 350 t 57 others BASE COUNT 80 a 111 c 110 g 59 t 4197 others ORIGIN 1 |caccaccag gagU||u--- -------(-- --aaacacgc -----cuaag ccag-----g 61 cuc------- ---------- --)------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- ---------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 -------|-- ----u|Gcuc c---|----- --------gg ac-|AGUAG- ---------- 781 ccccc(uac- --)gg-ggg- --------(c ggugguggcc ccuaa----- ---------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 ------CUAC U|--A----- -----|GUC- gg-------- c--------- ---------- 1021 --(acu---- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 ---------- ---------- ---------- ---------- ---------- ---------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- ---------- -)-------- ---------- 1561 ---------- ---------- ---------- ---------- ---------- ---------- 1621 ---------g --c--CGGC| --AA|CGCC- U-U-C|AAAG |UG--C-GGG |GAAC----| 1681 C-CC------ ---------- ---------- -|U------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- --------UA AG|------C 1801 UC-------U CU-AC|U-AC U|-------- ---------- ---------- ---------- 1861 ---|AAg-c- cgcc-g---- -g-uc-(uAA A--------- ---------- ---------- 1921 ---------- -)-ggc--cg --c-g-g-u- G-G|----|C C-A-G-G--- (cuagucc-- 1981 ---------- --------)- -C-C-U--G- G|-------g ua-c|AGU-A ACA-ACcGU- 2041 AGG-G-AG-| -A-------- ------|uu- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- --GGG|-CAA -|UC-CGCA| GCC|-AAga- 2221 |UCCggg--- ------(--- ---------- ---------- ---------- ---------- 2281 ---------- ----)|-|-| ---------- ---------- ---------- ---------- 2341 (c-ggc-uug cgc------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- -------|-- --------cc uGGA|-gAA| GGU|--CCA| GA-GACU-U| 2521 -GAC|GGA-G --G-CG|G|G UUU------- ---------- -(uac----- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ----GAGCC- |CAA-GA-GA |AA-GUC|C| -|GU-----| -uuc-|ggug c--------- 2761 ----(-GAAA ---------- )--------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---------- ---------- 2881 ---------- -g--c-g-c- c|-------- --|-cccgaa gguuccccug auaccgcugu 2941 a--------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---------- ---------- 3121 ---------- ---------- ---------- ---------- ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ---------- ---------- ---------- ---------- ---------- ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- ---------- 4021 ---------- ---------- ---------- ---------- ---------- ---------- 4081 ---------- ---------- ---------- ---------- ---------- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- ---------- ---------- ---------- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ------a--- -----AC|G- -||gga-cg~ ~~~~~~| // LOCUS Spo.r.1.1 4557 bp RNA RNA 28-JAN-191 DEFINITION Sporobolomyces ruber. ACCESSION No information KEYWORDS No information. SOURCE Sporobolomyces ruber. ORGANISM Sporobolomyces ruber. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 4557) Corresponding GenBank entry: AB021686 LOCUS AB021686 2072 bp DNA PLN 24-MAY-2000 DEFINITION Sporobolomyces ruber gene for 18S ribosomal RNA, partial sequence. ACCESSION AB021686 VERSION AB021686.1 GI:8096214 KEYWORDS 18S rRNA; 18S ribosomal RNA. SOURCE Sporobolomyces ruber (strain:JCM 6884) DNA. ORGANISM Sporobolomyces ruber Eukaryota; Fungi; Basidiomycota; Urediniomycetes; Sporidiobolaceae; anamorphic Sporidiobolaceae; Sporobolomyces. REFERENCE 1 (sites) AUTHORS Hamamoto,M. and Nakase,T. TITLE Phylogenetic analysis of the ballistoconidium-forming yeast genus Sporobolomyces based on 18S rDNA sequences JOURNAL Int. J. Syst. Evol. Microbiol. 50, 1373-1380 (2000) REFERENCE 2 (bases 1 to 2072) AUTHORS Hamamoto,M. TITLE Direct Submission JOURNAL Submitted (22-DEC-1998) to the DDBJ/EMBL/GenBank databases. Makiko Hamamoto, The Institute of Physical and Chemical Research (RIKEN), Japan Collection of Microorganisms; 2-1 Hirosawa, Wako, Saitama 351-0198, Japan (E-mail:hamamoto@ulmus.riken.go.jp, Tel:81-48-462-1111(ex.5113), Fax:81-48-462-4617) FEATURES Location/Qualifiers source 1..2072 /organism="Sporobolomyces ruber" /strain="JCM 6884" /db_xref="taxon:86681" rRNA join(<1..1144,1469..>2072) /product="18S ribosomal RNA" intron 1145..1468 BASE COUNT 574 a 410 c 537 g 551 t BASE COUNT 110 a 70 c 86 g 83 t 4208 others ORIGIN 1 |caccaccag gagu||a--- -------(-- --aacgcagu uaacuc---- ---------- 61 ---------- ---------- --)------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- ---------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 -------|-- ----u|gcuc c---|----- --------ga ac-|AGCA-- ---------- 781 -gccu(gaaa --)gg-gu-- --------(g aggugaacgu gcacuuguaa aaacaaaugu 841 aaa------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 -------UGC U|--A----- -----|GUG- UCAA------ ---------- ---------- 1021 --(ucu---- ---------- ---------- ---------u ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 ---------- ---------- ---------- ---------- ---------- ---------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- ---------- -)-------- ---------- 1561 ---------- ---------- ---------- ---------- ---------- ---------- 1621 --------UU --G--AUGC| --AA|GAUA- A-C-C|AAAU |UG--C-GG- |AACC----| 1681 U-UC------ ---------- ---------- -|u------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- --------AA UG|------C 1801 UAU------- UU-GC|U-AC U|-------- ---------- ---------- ---------- 1861 ---|AAG-C- CAAu-C---- -U-UA-(GUG A--------- ---------- ---------- 1921 ---------- -)-UAA--GU --U-G-G-U- G-G|----|C C-G-G-G-U- (aaug----- 1981 ---------- --------)- AC-C-U-UG- G|-------G UA-C|AGU-A AAA-AC-GC- 2041 AA--A-UGG| -a-------- ------|ugc uacaau---- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- --GAA|-CAA -|UC-CGCA| GCC|-AAg-- 2221 |UCCUCC--- ------(--- ---------- ---------- ---------- ---------- 2281 ---------- ----)|-|-| -------gag u--------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---|-|-|-- -------GGA GaGA|--AA| GGU|--UCA| GA-GACU-A| 2521 -GAC|GGU-U --A-UC|g|G UCUUG----- ---------- -(uauau--- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 --CAAGGCU- |UAA-GG-UA |UA-GUC|C| -|au-----| -----|aagc uacauuaa-- 2761 ---------- ---------- ---------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---------- ---------- 2881 ---------- ---------- -|-------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---------- ---------- 3121 ---------- ---------- ---------- ---------- ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ---------- ---------- ---------- ---------- ---------- ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- ---------- 4021 ---------- ---------- ---------- ---------- ---------- ---------- 4081 ---------- ---------- ---------- ---------- ---------- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- ---------- ---------- ---------- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- -----ug|G- -||gga-gcc ugcggc| // LOCUS Spo.s.1.1 4557 bp RNA RNA 28-JAN-191 DEFINITION Sporobolomyces sasicola. ACCESSION No information KEYWORDS No information. SOURCE Sporobolomyces sasicola. ORGANISM Sporobolomyces sasicola. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 4557) Corresponding GenBank entry: AB021688 LOCUS AB021688 2088 bp DNA PLN 24-MAY-2000 DEFINITION Sporobolomyces sasicola gene for 18S ribosomal RNA, partial sequence. ACCESSION AB021688 VERSION AB021688.1 GI:8096216 KEYWORDS 18S rRNA; 18S ribosomal RNA. SOURCE Sporobolomyces sasicola (strain:JCM 5979) DNA. ORGANISM Sporobolomyces sasicola Eukaryota; Fungi; Basidiomycota; Urediniomycetes; Sporidiobolaceae; anamorphic Sporidiobolaceae; Sporobolomyces. REFERENCE 1 (sites) AUTHORS Hamamoto,M. and Nakase,T. TITLE Phylogenetic analysis of the ballistoconidium-forming yeast genus Sporobolomyces based on 18S rDNA sequences JOURNAL Int. J. Syst. Evol. Microbiol. 50, 1373-1380 (2000) REFERENCE 2 (bases 1 to 2088) AUTHORS Hamamoto,M. TITLE Direct Submission JOURNAL Submitted (22-DEC-1998) to the DDBJ/EMBL/GenBank databases. Makiko Hamamoto, The Institute of Physical and Chemical Research (RIKEN), Japan Collection of Microorganisms; 2-1 Hirosawa, Wako, Saitama 351-0198, Japan (E-mail:hamamoto@ulmus.riken.go.jp, Tel:81-48-462-1111(ex.5113), Fax:81-48-462-4617) FEATURES Location/Qualifiers source 1..2088 /organism="Sporobolomyces sasicola" /strain="JCM 5979" /db_xref="taxon:5444" rRNA join(<1..1157,1480..>2088) /product="18S ribosomal RNA" intron 1158..1479 BASE COUNT 546 a 438 c 548 g 556 t BASE COUNT 95 a 84 c 94 g 73 t 4211 others ORIGIN 1 |caccaccag gagu||u--- -------(-- --aa--cgc- -------aag --acaaa--g 61 cuc------- ---------- --)------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- ---------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 -------|-- ----u|gcuc uu--|----- ---------c aa-|GGCGA- -------acc 781 agaaa(ugg- --)uu-ugug gu------(g ucccuuguaa cau------- ---------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 ------UCGC C|--A----- -----|GUA- CUC------- ---------- ---------- 1021 --(uac---- ---------- ---------- ---------g c--------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 ---------- ---------- ---------- ---------- ---------- ---------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- ---------- -)-------- ---------- 1561 ---------- ---------- ---------- ---------- ---------- ---------- 1621 ---------G --A--GgGC| --GA|CACU- U-U-C|AAAU |UG--C-GGG |GAAC----| 1681 U-CC------ ---------- ---------- -|ug------ ---------- ---------- 1741 ---------- ---------- ---------- ---------- --------AG AG|------C 1801 CCU------- CA-GC|U-AC C|-------- ---------- ---------- ---------- 1861 ---|AAG-U- CG-A-AGc-- -G-CU-(GAA A--------- ---------- ---------- 1921 ---------- -)-AGC-CUU --U-G-A-U- G-G|----|C C-A-G-A-UU (aaa------ 1981 ---------- --------)A AU-C-U-UG- G|-------G UA-C|GGU-A ACA-AC-GU- 2041 UG--A-GGG| -a-------- ------|uu- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- --GGA|-UGA -|UC-CGCA| GCC|-gccu- 2221 |CCCC----- ------(--- ---------- ---------- ---------- ---------- 2281 ---------- ----)|-|-| ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 --------uu ca-|A|U|-- ---------- GGGG|-cgc| GGU|--UCA| GA-GACU-A| 2521 -AAC|GGA-A --G-UG|g|G UCC------- ---------- -(acucuaa- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ----GGAUC- |UAA-GA-UA |UA-GUC-C| -|AU-----| -----|ggcu ugag------ 2761 ----(-GAAA ---------- )--------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---------- ---------- 2881 --------cu caa-a-g-c- u|-------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---------- ---------- 3121 ---------- ---------- ---------- ---------- ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ---------- ---------- ---------- ---------- ---------- ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- ---------- 4021 ---------- ---------- ---------- ---------- ---------- ---------- 4081 ---------- ---------- ---------- ---------- ---------- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- ---------- ---------- ---------- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ------gag| -----AU|G- -||gga-ca- ugcggc| // LOCUS Nig.g.1.1 4557 bp RNA RNA 08-JUN-1999 DEFINITION Nigrosabulum globosum. str. ATCC 22102 18S ribosomal RNA gene, partial sequence. ACCESSION No information KEYWORDS No information. SOURCE Nigrosabulum globosum. str. ATCC 22102 18S ribosomal RNA gene, partial sequence. ORGANISM Nigrosabulum globosum. REFERENCE 1 (bases 1 to 2232) AUTHORS Suh,S.-O. and Blackwell,M. TITLE Group I introns in nuclear small subunit ribosomal RNA genes of some ascomycetous fungi JOURNAL Unpublished STANDARD No information COMMENTS Organism information Culture collection: ATCC 22102 18S ribosomal RNA gene Sequence information (bases 1 to 4557) Corresponding GenBank entry: AF096180 LOCUS AF096180 1638 bp DNA PLN 22-NOV-1999 DEFINITION Nigrosabulum globosum strain ATCC 22102 18S ribosomal RNA gene, partial sequence. ACCESSION AF096180 VERSION AF096180.1 GI:5006384 KEYWORDS . SOURCE Nigrosabulum globosum. ORGANISM Nigrosabulum globosum Eukaryota; Fungi; Ascomycota; Eurotiales; Pseudeurotiaceae; Nigrosabulum. REFERENCE 1 (bases 1 to 1638) AUTHORS Suh,S.-O. and Blackwell,M. TITLE Molecular phylogeny of the cleistothecial fungi placed in Cephalothecaceae and Pseudeurotiaceae JOURNAL Mycologia 91 (5), 836-848 (1999) REFERENCE 2 (bases 1 to 1638) AUTHORS Suh,S.-O. and Blackwell,M. TITLE Group I introns in nuclear small subunit ribosomal RNA genes of some ascomycetous fungi JOURNAL Unpublished REFERENCE 3 (bases 1 to 1638) AUTHORS Suh,S.-O. and Blackwell,M. TITLE Direct Submission JOURNAL Submitted (01-OCT-1998) Biological Sciences, Louisiana State University, Baton Rouge, LA 70803, USA FEATURES Location/Qualifiers source 1..1638 /organism="Nigrosabulum globosum" /strain="ATCC 22102" /db_xref="taxon:95328" /db_xref="ATCC:22102" rRNA join(<1..1093,1473..>1638) /product="18S ribosomal RNA" intron 1094..1472 /note="group I" BASE COUNT 426 a 382 c 454 g 376 t BASE COUNT 91 a 132 c 132 g 48 t 4154 others ORIGIN 1 |caccaccag gggU||a--- -------(-- --aaauccg- ---------- --caga--ag 61 cuc------- ---------- --)------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- ---------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 -------|-- ----u|Gccc cu--|----- ---------a ag-|AGCAg- ---------- 781 -ccgg(gaga --)cc-gg-- ---------u cg-------- ------gugg gagaaaacag 841 cccgggcgcc gcagagcgcg aaccaa---- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 ------cUGC U|--A----- -----|GUC- GG-------- cc-cc----- ---------- 1021 --(ccc---- ---------- ---------- ---------g ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 ---------- ---------- ---------- ---------- ---------- ---------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- ---------- -)-------- ---------- 1561 ---------- ---------- ---------- ---------- ---------- ---------- 1621 ------gggg u-C--CGGC| --GA|CAUC- C-U-C|AAAU |UG--C-GGG |GAAU----| 1681 C-CC------ ---------- ---------- -|U------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- --------AA AG|------C 1801 CG-------c GU-GC|U-AC C|-------- ---------- ---------- ---------- 1861 ---|AAG-U- GG-G-C-c-- -G-CC-(GAA A--------- ---------- ---------- 1921 ---------- -)-GGC-cGC --C-C-G-U- G-G|----|C C-G-G-G-U- (cuaaca--- 1981 ---------- --------)- AC-C-C-cG- G|-------G UA-C|-GU-U ACA-AC-G-- 2041 CA--CCGG-| -A-------- ------|ug- ---------- ---------- --(-acaa-- 2101 ----)----- ---------- -ca|-----a u|-------- ---------- ---------- 2161 ---------- ---------- ---------- --GGG|-uga c|CU-CGCA| GCC|-AAG-- 2221 |CUCC----- ------(--- ---------- ---------- ---------- ---------- 2281 ---------- ----)|-|u| aca---|cgg ---------- ---------- ---------- 2341 (c-uug---- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- -------|-- 2461 ---------c cgc|g|c|-- --------ag gagg|--AA| GGU|--CCA| GA-GACU-U| 2521 -GAC|GGG-G --A-UG|G|G U-CcCGCCG- ---------- -(ccagc--- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------C 2701 GGCGuGGCC- |UAA-GA-UA |AA-GUC|C| -|GU-----| -----|cugc gcgc------ 2761 ----(-GAAA ---------- )--------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---------- ---------- 2881 --|-----gc gcu-g-c-a- g|-------- --|------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---------- ---------- 3121 ---------- ---------- ---------- ---------- ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ---------- ---------- ---------- ---------- ---------- ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- ---------- 4021 ---------- ---------- ---------- ---------- ---------- ---------- 4081 ---------- ---------- ---------- ---------- ---------- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- ---------- ---------- ---------- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -agcccuaa| -----AC|G- -||gga-cg- ugcggc| // LOCUS Isa.j.1.1 4557 bp RNA RNA 08-MAY-1999 DEFINITION Isaria japonica.. ACCESSION No information KEYWORDS No information. SOURCE Isaria japonica. ORGANISM Isaria japonica. REFERENCE 1 (bases 1 to 2232) AUTHORS Ito,Y. TITLE Group I intron in the 18S rDNA from Isaria japonica JOURNAL Published Only in DataBase (1999) In press STANDARD No information COMMENTS Sequence information (bases 1 to 4557) Corresponding GenBank entry: AB016607 LOCUS AB016607 381 bp DNA PLN 08-MAY-1999 DEFINITION Isaria japonica gene for 18S rRNA, Group I intron sequense, strain:IFO 30367. ACCESSION AB016607 NID g4760469 VERSION AB016607.1 GI:4760469 KEYWORDS 18S ribosomal RNA; 18S rRNA. SOURCE Isaria japonica (strain:IFO 30367) DNA. ORGANISM Isaria japonica Eukaryota; Fungi; Ascomycota; Euascomycetes; Pyrenomycetes; Hypocreales; Clavicipitaceae; Isaria. REFERENCE 1 (bases 1 to 381) AUTHORS Ito,Y. TITLE Group I intron in the 18S rDNA from Isaria japonica JOURNAL Published Only in DataBase (1999) In press REFERENCE 2 (bases 1 to 381) AUTHORS Ito,Y. TITLE Direct Submission JOURNAL Submitted (30-JUL-1998) to the DDBJ/EMBL/GenBank databases. Yuko Ito, National Institute of Bioscience and Human Technology, Biopolymers Laboratory; Higashi 1-1, Tsukuba, Ibaraki 305-8566, Japan (E-mail:yito@ccmail.nibh.go.jp, Tel:+81-298-54-6152, Fax:+81-298-54-6144) FEATURES Location/Qualifiers source 1..381 /organism="Isaria japonica" /strain="IFO 30367" /db_xref="taxon:72233" rRNA <1..>381 /product="18S rRNA" intron 1..381 /note="Group I intron in the 18S rDNA" BASE COUNT 82 a 108 c 133 g 58 t BASE COUNT 82 a 108 c 133 g 58 t 4176 others ORIGIN 1 |~~~~~~~~~ ~~~~||a--- -------(-- --aac-cgcu --ucaugcag ccgcagu-ag 61 cuc------- ---------- --)------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- ---------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 -------|-- ----u|Gcuc c---|----- --------ag aa-|AGC--- ---------- 781 cgccc(gaaa --)gg--u-- --------(c gguggu---- --guuccugu cg-------- 841 --gcgccuc- ---------- -ggcgcgacg aa-guaacg- --u------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------GC U|--A----- -----|GUC- uuc------c cg-ggag--- -----c---- 1021 --(cac---- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 ---------- ---------- ---------- ---------- ---------- ---------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- ---------- -)-------- --g-cu---- 1561 ---------- ---------- ---------- ---------- ---------- ---------- 1621 ----cccg-g --g--GGGC| --GA|CACC- C-U-C|AAAU |UG--C-GGG |AAAC----| 1681 U-CC------ ---------- ---------- -|U------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- --------AA AG|------C 1801 CA-------- GC-GA|C-AC C|-------- ---------- ---------- ---------- 1861 ---|AAg-c- cg-g-c---- -g-cc-(GAA A--------- ---------- ---------- 1921 ---------- -)gggc--gu --c-g-g-u- g-g|----|C C-a-G-G-G- (caauga--- 1981 ---------- --------)- CC-C-g--G- G|-------G UA-C|GGU-A AAA-GC-GC- 2041 GC--U-GG-| -A-------- ------|ug- ---------- ---------- --(gu-g--- 2101 ---)------ ---------- -ca|-----a u|-------- ---------- ---------- 2161 ---------- ---------- ---------- --GGA|-CGA -|UC-CGCA| GCC|-AAG-- 2221 |CCUC----- ------(--- ---------- ---------- ---------- ---------- 2281 ---------- ----)|-|-| ------|guc gccgcag--- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ------g-gc ac-|g|-|-- ---------- GGGG|---A| GGU|--uca| Ga-GACU-U| 2521 -GAU|GGG-G --G-UG|G|G UGUGGC---- ---------- -(gcgc---- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 -GUCACGCC- |UAA-GA-UA |AA-GUC|c| -|GU-----| -----|cuac gc-------- 2761 ----(ag-GA AA--)gu--- guguaggggu gaccu----- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---------- ---------- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---------- ---------- 3121 ---------- ---------- ---------- ---------- ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ---------- ---------- ---------- ---------- ---------- ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- ---------- 4021 ---------- ---------- ---------- ---------- ---------- ---------- 4081 ---------- ---------- ---------- ---------- ---------- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- ---------- ---------- ---------- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -----aa--| -----AC|G- -||~~~-~~~ ~~~~~~| // LOCUS Xyl.p.1.1 4557 bp RNA RNA 10-JUL-1998 DEFINITION Xylaria polymorpha.. ACCESSION No information KEYWORDS No information. SOURCE Xylaria polymorpha. ORGANISM Xylaria polymorpha. REFERENCE 1 (bases 1 to 2232) AUTHORS Miyado,S., Kawasaki,H. and Sugiyama,J. TITLE Identification of strain PF1022, a producer of new anthelmintic cyclodepsipeptides JOURNAL Unpublished (1998) STANDARD No information COMMENTS Sequence information (bases 1 to 4557) Corresponding GenBank entry: AB014043 LOCUS AB014043 3032 bp DNA PLN 10-JUL-1998 DEFINITION Xylaria polymorpha gene for 18S rRNA, partial sequence. ACCESSION AB014043 NID g3299797 KEYWORDS 18S rRNA; 18S ribosomal RNA. SOURCE Xylaria polymorpha (strain:IFO9780) DNA. ORGANISM Xylaria polymorpha Eukaryota; Fungi; Ascomycota; Euascomycetes; Pyrenomycetes; Xylariales; Xylariaceae; Xylaria. REFERENCE 1 (sites) AUTHORS Miyado,S., Kawasaki,H. and Sugiyama,J. TITLE Identification of strain PF1022, a producer of new anthelmintic cyclodepsipeptides JOURNAL Unpublished (1998) REFERENCE 2 (bases 1 to 3032) AUTHORS Kawasaki,H. and Miyado,S. TITLE Direct Submission JOURNAL Submitted (15-MAY-1998) to the DDBJ/EMBL/GenBank databases. Hiroko Kawasaki, Osaka University, International Center of Biotechnology; Yamada-oka 2-1, Suita, Osaka 565-0871, Japan (E-mail:kawasaki@icb.osaka-u.ac.jp, Tel:81-6-879-7455, Fax:81-6-879-7454) FEATURES Location/Qualifiers source 1..3032 /organism="Xylaria polymorpha" /strain="IFO9780" /db_xref="taxon:77046" rRNA <1..>3032 /product="18S rRNA" BASE COUNT 799 a 610 c 791 g 824 t 8 others BASE COUNT 100 a 82 c 104 g 88 t 4183 others ORIGIN 1 |caccaccag gagU||a--- -------(-- --aac-cgc- -------agu -------uan 61 cuc------- ---------- --)------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- ---------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 -------|-- ----u|Gcuc c---|----- --------ua aa-|AGC--- ---------u 781 ggucc(gaaa --)gg-guu- --------(a gguggu---u ---------- ---------- 841 ---------- --gcuaauau aca------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------GC U|--A----- -----|GUC- ag-------- c--------- ---------- 1021 --(guc---- ---------- ---------- ---------u ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 ---------- ---------- ---------- ---------- ---------- ---------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- ---------- -)-------- ---------- 1561 ---------- ---------- ---------- ---------- ---------- ---------- 1621 ---------g --c--UGGC| --GA|CACC- C-U-C|CAAU |UG--C-GGG |GAAC----| 1681 U-CC------ ---------- ---------- -|U------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- --------AA AG|------C 1801 AU-------- CA-AC|U-AC C|-------- ---------- ---------- ---------- 1861 ---|gcg-g- cc---u---- -g-uc-(GAA A--------- ---------- ---------- 1921 ---------- -)-gau--aa --g-g-u-g- c-a|gca-|C C-A-G-G-U- (uaaug---- 1981 ---------- --------)- gc-c-u-cg- g|-------G UA-U|GGU-A AAA-AC-GU- 2041 UG--G-UG-| -A-------- ------|ug- ---------- ---------- --(uu-a--- 2101 ---)------ ---------- -cn|-----a u|-------- ---------- ---------- 2161 ---------- ---------- ---------- --GGA|-CAA -|UC-CGCA| GCC|-AAg-- 2221 |CACC----- ------(--- ---------- ---------- ---------- ---------- 2281 ---------- ----)|-|-| ---------- ---------- ----u----- ---------- 2341 -u--aa---- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 --au------ -------|-- ---------- GGUG|--AA| GGU|--UCA| GA-GACU-U| 2521 -GAC|GGG-G --G-UG|G|G Uaccga---- ---------- -(agugguug uugu------ 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 -uugguGCU- |UAA-GA-UA |AA-GUC|C| -|AU-----| -----|gacu augcu----- 2761 ----(-gaaa ---------- ---------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ------)agc uugugaauaa cuuguacau- 2881 ---------- ------c-a- g|-------- ----gu---- ---------- ---cuc---- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---------- ---------- 3121 ---------- ---------- ---------- ---------- ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ---------- ---------- ---------- ---------- ---------- ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --------ua 4021 u--------- ---------- ---------- ---------- ---------- ---------- 4081 ---------- ---------- ---------- ---------- ---------- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- ---------- ---------- ---------- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ------a--| -----AC|G- -||gga-gcc ugcggc| // LOCUS Myc.i.1.2 4557 bp RNA RNA 10-NOV-1998 DEFINITION Mycoarachis inversa.. ACCESSION No information KEYWORDS No information. SOURCE Mycoarachis inversa. ORGANISM Mycoarachis inversa. REFERENCE 1 (bases 1 to 2232) AUTHORS Ogawa,H., Sugiyama,J. and Endo,M. TITLE Group I introns inserted in the 18S rDNA JOURNAL Published Only in DataBase (1998) In press STANDARD No information COMMENTS Organism information Culture collection: ATCC 22107 Sequence information (bases 1 to 4557) Corresponding GenBank entry: AB013736 LOCUS AB013736 364 bp DNA PLN 10-NOV-1998 DEFINITION Mycoarachis inversa gene for 16S-like rRNA, group I intron. ACCESSION AB013736 NID g3868818 KEYWORDS 16S-like ribosomal RNA. SOURCE Mycoarachis inversa (strain:ATCC 22107) DNA. ORGANISM Mycoarachis inversa Eukaryota; Fungi; Ascomycota; Euascomycetes; Plectomycetes; Eurotiales; Pseudeurotiaceae; Mycoarachis. REFERENCE 1 (bases 1 to 364) AUTHORS Ogawa,H., Sugiyama,J. and Endo,M. TITLE Group I introns inserted in the 18S rDNA JOURNAL Published Only in DataBase (1998) In press REFERENCE 2 (bases 1 to 364) AUTHORS Ogawa,H., Sugiyama,J. and Endo,M. TITLE Direct Submission JOURNAL Submitted (08-MAY-1998) to the DDBJ/EMBL/GenBank databases. Hiroyuki Ogawa, National Institute of Genetics, Center for Information Biology; Yata 1111, Mishima, Shizuoka 411-8540, Japan (E-mail:hiogawa@lab.nig.ac.jp, Tel:81-559-81-6895, Fax:81-559-81-6896) FEATURES Location/Qualifiers source 1..364 /organism="Mycoarachis inversa" /strain="ATCC 22107" /db_xref="taxon:29864" intron 1..364 /note="Group I intron inserted at position 943 of 16S-like rRNA gene" BASE COUNT 84 a 112 c 119 g 49 t BASE COUNT 84 a 112 c 119 g 49 t 4193 others ORIGIN 1 |~~~~~~~~~ ~~~~||a--- -------(-- --aaa-cgc- -------cgc -------aag 61 cuc------- ---------- --)------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- ---------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 -------|-- ----u|Gcuc c---|----- --------gg aa-|AGC--- ---------a 781 gccag(gaga --)cu-ggu- --------(c gguggu---- ---------- ---------- 841 ---------- -gccuucaga ac-acaagu- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------GC U|--A----- -----|GUC- AC-------- c--------- ---------- 1021 --(cuc---- ---------- ---------- ---------c gc-------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 ---------- ---------- ---------- ---------- ---------- ---------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- ---------- -)-------- ---------- 1561 ---------- ---------- ---------- ---------- ---------- ---------- 1621 ---------g --G--UGGC| --GA|CACC- C-U-C|AAAU |UG--C-GGG |AAAU----| 1681 C-CC------ ---------- ---------- -|U------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- --------AA AG|------C 1801 CG-------c GU-GC|U-AC C|-------- ---------- ---------- ---------- 1861 ---|AAC-C- GG-A-C-C-- -G-CC-(GAA A--------- ---------- ---------- 1921 ---------- -)-GGC--GG --C-C-G-G- G-G|----|C U-G-G-G-C- (uaacu---- 1981 ---------- --------)- GC-C-A-CA- G|-------G UA-U|GGU-C ACA-AC-GC- 2041 AC--C-GG-| -a-------- ------|uga gc-------- ---------- ---------- 2101 ---------- --gg-ccgag aggccgcg-- ---------- ---------- ---------- 2161 ---------- ---------- ------aag- u-GGG|-UGA -|UC-CGCA| GCC|-AAg-- 2221 |CUCC----- ------(--- ---------- ---------- ---------- ---------- 2281 ---------- ----)|-|U| AC----|gua gagg------ ---------- ---------- 2341 (u-cc----- ---------- ---------- ---------- ---------- ---------- 2401 -------)|- --[------- ---------- ---------- ---------- -------|-- 2461 ----ccu-cu au-|A|C|-- ---------- GGAG|--AA| GGU|--CCA| GA-GACU-U| 2521 -GAC|GGG-G --G-UG|G|G Ugcggc---- ---------- -(agcg---- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 -gccgcGCC- |GAA-GA-UA |AA-GUC|C| -|GU-----| -----|ccgg cgugc----- 2761 ----(-gaaa ---------- )--------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---------- ---------- 2881 -------gcg cc--c-c-g- g|-------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---------- ---------- 3121 ---------- ---------- ---------- ---------- ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ---------- ---------- ---------- ---------- ---------- ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- ---------- 4021 ---------- ---------- ---------- ---------- ---------- ---------- 4081 ---------- ---------- ---------- ---------- ---------- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- ---------- ---------- ---------- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------a ucccuaa--| -----AC|G- -||~~~-~~~ ~~~~~~| // LOCUS Myc.i.2.2 4557 bp RNA RNA 09-OCT-1998 DEFINITION Mycoarachis inversa.. ACCESSION No information KEYWORDS No information. SOURCE Mycoarachis inversa. ORGANISM Mycoarachis inversa. REFERENCE 1 (bases 1 to 2232) AUTHORS Ogawa,H., Saikawa,M. and Sugiyama,J. TITLE penicillus-like structure based on the comparison of the mode of conidium ontogeny and the 18S ribosomal DNA sequence Integrated analysis of evolutionary convergence in the JOURNAL Unpublished (1998) STANDARD No information COMMENTS Sequence information (bases 1 to 4557) Corresponding GenBank entry: AB012953 LOCUS AB012953 2388 bp DNA PLN 09-OCT-1998 DEFINITION Mycoarachis inversa gene for 18S rRNA, partial sequence. ACCESSION AB012953 NID g3721661 KEYWORDS 18S ribosomal RNA; 18S rRNA. SOURCE Mycoarachis inversa (strain:IAM 14639) DNA. ORGANISM Mycoarachis inversa Eukaryota; Fungi; Ascomycota; Euascomycetes; Plectomycetes; Eurotiales; Pseudeurotiaceae; Mycoarachis. REFERENCE 1 (sites) AUTHORS Ogawa,H., Saikawa,M. and Sugiyama,J. TITLE Integrated analysis of evolutionary convergence in the penicillus-like structure based on the comparison of the mode of conidium ontogeny and the 18S ribosomal DNA sequence JOURNAL Unpublished (1998) REFERENCE 2 (bases 1 to 2388) AUTHORS Ogawa,H. and Sugiyama,J. TITLE Direct Submission JOURNAL Submitted (14-APR-1998) to the DDBJ/EMBL/GenBank databases. Hiroyuki Ogawa, National Institute of Genetics, Center for Information Biology; Yata 1111, Mishima, Shizuoka 411-8540, Japan (E-mail:KFR00124@nifty.ne.jp, Tel:81-559-81-6895, Fax:81-559-81-6896) FEATURES Location/Qualifiers source 1..2388 /organism="Mycoarachis inversa" /strain="IAM 14639" /db_xref="taxon:29864" exon <1..522 rRNA join(<1..522,813..1417,1781..>2388) /product="18S rRNA" intron 523..812 /function="Group I intron" exon 813..1417 intron 1418..1780 /function="Group I intron" exon 1781..>2388 BASE COUNT 593 a 575 c 689 g 530 t 1 others BASE COUNT 88 a 121 c 129 g 51 t 4168 others ORIGIN 1 |caccaccag gggU||a--- -------(-- --aaa-cgc- -------cgc -------aag 61 cuc------- ---------- --)------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- ---------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 -------|-- ----u|Gcuc c---|----- --------gg aa-|AGC--- ---------a 781 gccag(gaga --)cu-ggu- --------(c gguggugccu ucagaacaca agu------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------GC U|--A----- -----|GUC- AC-------- c--------- ---------- 1021 --(cuc---- ---------- ---------- ---------c gc-------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 ---------- ---------- ---------- ---------- ---------- ---------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- ---------- -)-------- ---------- 1561 ---------- ---------- ---------- ---------- ---------- ---------- 1621 ---------g --G--UGGC| --GA|CACC- C-U-C|AAAU |UG--C-GGG |AAAU----| 1681 C-CC------ ---------- ---------- -|U------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- --------AA AG|------C 1801 CG-------c GU-GC|U-AC C|-------- ---------- ---------- ---------- 1861 ---|AAC-C- GGac-c---- -G-CC-(GAA A--------- ---------- ---------- 1921 ---------- -)-GGC--GG --C-C-G-G- G-G|----|C U-G-G-G-C- (uaacu---- 1981 ---------- --------)- GC-C-A-CA- G|-------G UA-U|GGU-C ACA-AC-GC- 2041 AC--C-GG-| -A-------- ------|ug- ---------- ---------- --agcggc-- 2101 ---------- ---------- -cg------a ---------- ---------- -----gaggc 2161 cgcgaagu-- ---------- ---------- --GGG|-UGA -|UC-CGCA| GCC|-AAg-- 2221 |CUCC----- ------(--- ---------- ---------- ---------- ---------- 2281 ---------- ----)|-|U| AC----|gua gagg------ ---------- ---------- 2341 (u-cc----- ---------- ---------- ---------- ---------- ---------- 2401 -------)|- --[------- ---------- ---------- ---------- -------|-- 2461 ----ccu-cu au-|A|C|-- ---------- GGAG|--AA| GGU|--CCA| GA-GACU-U| 2521 -GAC|GGG-G --G-UG|G|G Ugcggc---- ---------- -(agcg---- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 -gccgcGCC- |GAA-GA-UA |AA-GUC|C| -|GU-----| -----|ccgg cgugc----- 2761 ----(-gaaa ---------- ---------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- -------)-- ---------- ---------- 2881 -------gcg cc--c-c-g- g|-------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---------- ---------- 3121 ---------- ---------- ---------- ---------- ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ---------- ---------- ---------- ---------- ---------- ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- ---------- 4021 ---------- ---------- ---------- ---------- ---------- ---------- 4081 ---------- ---------- ---------- ---------- ---------- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- ---------- ---------- ---------- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------a ucccuaa--| -----AC|G- -||gga-gcc ugcggc| // LOCUS Bio.o.2.1 4557 bp RNA RNA 10-NOV-1998 DEFINITION Bionectria ochroleuca. subsp. synonym Nectria ochroleuca str. IAM 14569. ACCESSION No information KEYWORDS No information. SOURCE Bionectria ochroleuca. subsp. synonym Nectria ochroleuca str. IAM 14569. ORGANISM Bionectria ochroleuca. REFERENCE 1 (bases 1 to 2232) AUTHORS Ogawa,H., Sugiyama,J. and Endo,M. TITLE Group I introns inserted in the fungal 18S rDNA JOURNAL Published Only in DataBase (1998) In press STANDARD No information COMMENTS Sequence information (bases 1 to 4557) Corresponding GenBank entry: AB013739 LOCUS AB013739 365 bp DNA PLN 10-NOV-1998 DEFINITION Nectria ochroleuca gene for 16S-like rRNA, group I intron. ACCESSION AB013739 NID g3868821 KEYWORDS 16S-like ribosomal RNA. SOURCE Nectria ochroleuca (strain:IAM 14569) DNA. ORGANISM Nectria ochroleuca Eukaryota; Fungi; Ascomycota; Euascomycetes; Pyrenomycetes; Hypocreales; Hypocreaceae; Nectria. REFERENCE 1 (bases 1 to 365) AUTHORS Ogawa,H., Sugiyama,J. and Endo,M. TITLE Group I introns inserted in the fungal 18S rDNA JOURNAL Published Only in DataBase (1998) In press REFERENCE 2 (bases 1 to 365) AUTHORS Ogawa,H., Sugiyama,J. and Endo,M. TITLE Direct Submission JOURNAL Submitted (08-MAY-1998) to the DDBJ/EMBL/GenBank databases. Hiroyuki Ogawa, National Institute of Genetics, Center for Information Biology; Yata 1111, Mishima, Shizuoka 411-8540, Japan (E-mail:hiogawa@lab.nig.ac.jp, Tel:81-559-81-6895, Fax:81-559-81-6896) FEATURES Location/Qualifiers source 1..365 /organism="Nectria ochroleuca" /strain="IAM 14569" /db_xref="taxon:29856" intron 1..365 /note="Group I intron inserted at position 943 of 16S-like rRNA gene" BASE COUNT 106 a 93 c 104 g 62 t BASE COUNT 106 a 93 c 104 g 62 t 4192 others ORIGIN 1 |~~~~~~~~~ ~~~~||u--- -------(-- --aac--aga c--cgcaguc gcuc------ 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- ---------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 -------|-- ----u|Gccc c---|----- --------ua aa-|AGC--- ---------a 781 gccgg(gaaa --)cu-gguu --------(a ggugggaa-a guccuuggcc gg-------- 841 --aaggccga acauu----- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------GC U|--A----- -----|GUC- auc------- ---------- ---------- 1021 --(gaa---- ---------- ---------- ---------u ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 ---------- ---------- ---------- ---------- ---------- ---------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- ---------- -)-------- ---------- 1561 ---------- ---------- ---------- ---------- ---------- ---------- 1621 ---------- g-A--UGGC| --AA|CACC- C-U-C|AAAC |UG-AC-GGG |AACG----| 1681 U-CC------ ---------- ---------- -|U------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- --------AA AG|------C 1801 CG-------A UC-AA|C-AC C|-------- ---------- ---------- ---------- 1861 ---|AAG-C- AG-g-c---- -g-acc(GAA A--------- ---------- ---------- 1921 ---------- -)-ggc--gc --C-U-G-U- G-G|----|C C-G-A-G-C- (uaaca---- 1981 ---------- --------)- GC-C-C-UG- G|-------G UA-U|GGU-A AAA-GC-UU- 2041 GAU-C-GG-| -A-------- ------|ug- ---------- ---------- --(cc-a--- 2101 ---)------ ---------- -ca|-----a u|-------- ---------- ---------- 2161 ---------- ---------- ---------- --GGA|-UAA -|CU-CGCA| GCC|-AAg-- 2221 |cccc----- ------(--- ---------- ---------- ---------- ---------- 2281 ---------- ----)|-|U| ac----|gua ga-------- ---------- ---------- 2341 (g-cga---- ---------- ---------- ---------- ---------- ---------- 2401 -------)|- --[------- ---------- ---------- ---------- -------|-- 2461 ------u-cu au-|A|C|-- ---------- gggg|--AA| GGU|--UCA| GA-GACU-U| 2521 -AAC|GGG-G --G-UG|G|G Uguggu---- ---------- -(guag---- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------) ---------- 2701 -accaUGCC- |UAA-GA-UA |AA-GUC|C| -|GU-----| -----|ccgc cugc------ 2761 ----(-gaaa ---------- )--------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---------- ---------- 2881 --------gc uu--g-c-g- a|-------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---------- ---------- 3121 ---------- ---------- ---------- ---------- ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ---------- ---------- ---------- ---------- ---------- ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- ---------- 4021 ---------- ---------- ---------- ---------- ---------- ---------- 4081 ---------- ---------- ---------- ---------- ---------- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- ---------- ---------- ---------- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---auaaaac cguaaaa--| -----AC|G- -||~~~-~~~ ~~~~~~| // LOCUS Bio.o.1.1 4557 bp RNA RNA 09-OCT-1998 DEFINITION Bionectria ochroleuca. subsp. synonym Nectria ochroleuca str. IAM 14570. ACCESSION No information KEYWORDS No information. SOURCE Bionectria ochroleuca. subsp. synonym Nectria ochroleuca str. IAM 14570. ORGANISM Bionectria ochroleuca. REFERENCE 1 (bases 1 to 2232) AUTHORS Ogawa,H., Saikawa,M. and Sugiyama,J. TITLE Integrated analysis of evolutionary convergence in the JOURNAL Unpublished (1998) STANDARD No information COMMENTS Sequence information (bases 1 to 4557) Corresponding GenBank entry: AB012952 LOCUS AB012952 2472 bp DNA PLN 09-OCT-1998 DEFINITION Nectria ochroleuca gene for 18S rRNA, partial sequence. ACCESSION AB012952 NID g3721660 KEYWORDS 18S ribosomal RNA; 18S rRNA. SOURCE Nectria ochroleuca (strain:IAM 14570) DNA. ORGANISM Nectria ochroleuca Eukaryota; Fungi; Ascomycota; Euascomycetes; Pyrenomycetes; Hypocreales; Hypocreaceae; Nectria. REFERENCE 1 (sites) AUTHORS Ogawa,H., Saikawa,M. and Sugiyama,J. TITLE Integrated analysis of evolutionary convergence in the penicillus-like structure based on the comparison of the mode of conidium ontogeny and the 18S ribosomal DNA sequence JOURNAL Unpublished (1998) REFERENCE 2 (bases 1 to 2472) AUTHORS Ogawa,H. and Sugiyama,J. TITLE Direct Submission JOURNAL Submitted (14-APR-1998) to the DDBJ/EMBL/GenBank databases. Hiroyuki Ogawa, National Institute of Genetics, Center for Information Biology; Yata 1111, Mishima, Shizuoka 411-8540, Japan (E-mail:KFR00124@nifty.ne.jp, Tel:81-559-81-6895, Fax:81-559-81-6896) FEATURES Location/Qualifiers source 1..2472 /organism="Nectria ochroleuca" /strain="IAM 14570" /db_xref="taxon:29856" exon <1..1127 rRNA join(<1..1127,1491..1751,2127..>2472) /product="18S rRNA" intron 1128..1490 /function="Group I intron" exon 1491..1751 intron 1752..2126 /function="Group I intron" exon 2127..>2472 BASE COUNT 642 a 571 c 678 g 581 t BASE COUNT 107 a 102 c 113 g 66 t 4169 others ORIGIN 1 |caccaccag gggU||u--- -------(-- --aac--aga c--cgcaguc gcuc------ 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- ---------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 -------|-- ----u|Gccc c---|----- --------ua aa-|AGC--- ---------a 781 gccgg(gaaa --)cu-gguu --------(a ggugggaa-a guccuuggcc gg-------- 841 --aaggccga auacu----- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------GC U|--A----- -----|GUC- auc------- ---------- ---------- 1021 --(gaa---- ---------- ---------- ---------c ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 ---------- ---------- ---------- ---------- ---------- ---------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- ---------- -)-------- ---------- 1561 ---------- ---------- ---------- ---------- ---------- ---------- 1621 ---------- g-A--UGGC| --AA|CACC- C-U-C|AAAC |UG-AC-GGG |AACG----| 1681 U-CC------ ---------- ---------- -|U------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- --------AA AG|------C 1801 CG-------A UC-AA|C-AC C|-------- ---------- ---------- ---------- 1861 ---|AAG-C- AG-g-c---- -g-ucc(GAA A--------- ---------- ---------- 1921 ---------- -)-ggu--gc --C-U-G-U- G-G|----|C C-G-A-G-C- (uaaua---- 1981 ---------- --------)- GC-C-C-UG- G|-------A GA-U|GGU-A AAA-GC-UU- 2041 GAU-C-GG-| -A-------- ------|ug- ---------- ---------- --(cu-a--- 2101 ---)------ ---------- -ca|-----a u|-------- ---------- ---------- 2161 ---------- ---------- ---------- --GGA|-UAA -|CU-CGCA| GCC|-AAg-- 2221 |cccc----- ------(--- ---------- ---------- ---------- ---------- 2281 ---------- ----)|-|U| ac----|gug u--------- ---------- ---------- 2341 (u-ccg---- ---------- ---------- ---------- ---------- ---------- 2401 -------)-- ---------- ---------- ---------- ---------- ---------- 2461 --------ac au-|A|C|-- ---------- gggg|--AA| GGU|--UCA| GA-GACU-U| 2521 -AAC|GGG-G --G-UG|G|G Uguggu---- ---------- -(guag---- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------) ---------- 2701 -accaUGCC- |UAA-GA-UA |AA-GUC|C| -|GU-----| -----|ccgc cugc------ 2761 ----(-gaaa ---------- )--------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---------- ---------- 2881 --------gc uu--g-c-g- a|-------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---------- ---------- 3121 ---------- ---------- ---------- ---------- ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ---------- ---------- ---------- ---------- ---------- ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- ---------- 4021 ---------- ---------- ---------- ---------- ---------- ---------- 4081 ---------- ---------- ---------- ---------- ---------- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- ---------- ---------- ---------- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---auacaac cguaaaa--| -----AC|G- -||gga-gcc ugcggc| // LOCUS Bio.a.1.1 4557 bp RNA RNA 09-OCT-1998 DEFINITION Bionectria aureofulva. subsp. was Nectria aureofulva. ACCESSION No information KEYWORDS No information. SOURCE Bionectria aureofulva. subsp. was Nectria aureofulva. ORGANISM Bionectria aureofulva. REFERENCE 1 (bases 1 to 2232) AUTHORS Ogawa,H., Saikawa,M. and Sugiyama,J. TITLE penicillus-like structure based on the comparison of the mode of conidium ontogeny and the 18S ribosomal DNA sequence Integrated analysis of evolutionary convergence in the JOURNAL Unpublished (1998) STANDARD No information COMMENTS Sequence information (bases 1 to 4557) Corresponding GenBank entry: AB013010 LOCUS AB013010 2469 bp DNA PLN 09-OCT-1998 DEFINITION Nectria aureofulva gene for 18S rRNA, partial sequence. ACCESSION AB013010 NID g3721760 KEYWORDS 18S ribosomal RNA; 18S rRNA. SOURCE Nectria aureofulva (strain:IAM 14567) DNA. ORGANISM Nectria aureofulva Eukaryota; Fungi; Ascomycota; Euascomycetes; Pyrenomycetes; Hypocreales; Hypocreaceae; Nectria. REFERENCE 1 (sites) AUTHORS Ogawa,H., Saikawa,M. and Sugiyama,J. TITLE Integrated analysis of evolutionary convergence in the penicillus-like structure based on the comparison of the mode of conidium ontogeny and the 18S ribosomal DNA sequence JOURNAL Unpublished (1998) REFERENCE 2 (bases 1 to 2469) AUTHORS Ogawa,H. and Sugiyama,J. TITLE Direct Submission JOURNAL Submitted (15-APR-1998) to the DDBJ/EMBL/GenBank databases. Hiroyuki Ogawa, National Institute of Genetics, Center for Information Biology; Yata 1111, Mishima, Shizuoka 411-8540, Japan (E-mail:KFR00124@nifty.ne.jp, Tel:81-559-81-6895, Fax:81-559-81-6896) FEATURES Location/Qualifiers source 1..2469 /organism="Nectria aureofulva" /strain="IAM 14567" /db_xref="taxon:29854" exon <1..1127 rRNA join(<1..1127,1492..1802,2124..>2469) /product="18S rRNA" intron 1128..1491 /note="Group-I intron" exon 1492..1802 intron 1803..2123 /note="Group-I intron" exon 2124..>2469 BASE COUNT 644 a 553 c 671 g 594 t 7 others BASE COUNT 111 a 96 c 111 g 69 t 4170 others ORIGIN 1 |caccaccag gggU||u--- -------(-- --aac--aga c--cgcaguc gcuc------ 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- ---------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 -------|-- ----u|Gccc c---|----- --------ua aa-|AGC--- ---------a 781 gccgg(gaaa --)cu-gguu -------a(a gguggg---a guccuuggcc gg-------- 841 --aaggccga aaacu----- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------GC U|--A----- -----|GUC- auc------- ---------- ---------- 1021 --(gaa---- ---------- ---------- ---------c ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 ---------- ---------- ---------- ---------- ---------- ---------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- ---------- -)-------- ---------- 1561 ---------- ---------- ---------- ---------- ---------- ---------- 1621 ---------- g-A--UGGC| --AA|CACC- C-U-C|AAAC |UG-AC-GGG |AACG----| 1681 U-CC------ ---------- ---------- -|U------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- --------AA AG|------C 1801 UG-------A UC-AA|C-AC C|-------- ---------- ---------- ---------- 1861 ---|AAG-C- AA-g-u---- -g-ucc(GAA A--------- ---------- ---------- 1921 ---------- -)-ggu--gc --U-U-G-U- G-G|----|C C-G-A-G-C- (uaaua---- 1981 ---------- --------)- GC-C-C-UG- G|-------G UA-U|GGU-A AAA-GC-UU- 2041 GAU-C-AN-| -A-------- ------|ug- ---------- ---------- --(cu-a--- 2101 ---)------ ---------- -ca|-----a u|-------- ---------- ---------- 2161 ---------- ---------- ---------- --GGA|-UAA -|CU-CGCA| GCC|-AAg-- 2221 |cccc----- ------(--- ---------- ---------- ---------- ---------- 2281 ---------- ----)|-|U| aa----|gua ga-------- ---------- ---------- 2341 (g-cga---- ---------- ---------- ---------- ---------- ---------- 2401 -------)|- --[------- ---------- ---------- ---------- -------|-- 2461 ------u-cu au-|A|C|-- ---------- gggg|--AA| GGU|--UCA| GA-GACU-U| 2521 -AAC|GGG-G --G-UG|G|G Uguggu---- ---------- -(guan---- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------) ---------- 2701 -accaUGCC- |UAA-GA-UA |AA-GUC|C| -|GU-----| -----|ccgc cugc------ 2761 ----(-gaaa ---------- )--------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---------- ---------- 2881 --------gc uu--g-c-g- u|-------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---------- ---------- 3121 ---------- ---------- ---------- ---------- ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ---------- ---------- ---------- ---------- ---------- ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- ---------- 4021 ---------- ---------- ---------- ---------- ---------- ---------- 4081 ---------- ---------- ---------- ---------- ---------- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- ---------- ---------- ---------- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---agaaaac cguaaaa--| -----AC|G- -||gga-gcc ugcggc| // LOCUS Ros.n.1.1 4557 bp RNA RNA 10-JUL-1998 DEFINITION Rosellinia necatrix.. ACCESSION No information KEYWORDS No information. SOURCE Rosellinia necatrix. ORGANISM Rosellinia necatrix. REFERENCE 1 (bases 1 to 2232) AUTHORS Miyado,S., Kawasaki,H. and Sugiyama,J. TITLE Identification of strain PF1022, a producer of new anthelmintic cyclodepsipeptides JOURNAL Unpublished (1998) STANDARD No information COMMENTS Sequence information (bases 1 to 4557) Corresponding GenBank entry: AB014044 LOCUS AB014044 2590 bp DNA PLN 10-JUL-1998 DEFINITION Rosellinia necatrix gene for 18S rRNA, partial sequence. ACCESSION AB014044 NID g3299798 KEYWORDS 18S rRNA; 18S ribosomal RNA. SOURCE Rosellinia necatrix (strain:IFO32537) DNA. ORGANISM Rosellinia necatrix Eukaryota; Fungi; Ascomycota; Euascomycetes; Pyrenomycetes; Xylariales; Xylariaceae; Rosellinia. REFERENCE 1 (sites) AUTHORS Miyado,S., Kawasaki,H. and Sugiyama,J. TITLE Identification of strain PF1022, a producer of new anthelmintic cyclodepsipeptides JOURNAL Unpublished (1998) REFERENCE 2 (bases 1 to 2590) AUTHORS Kawasaki,H. and Miyado,S. TITLE Direct Submission JOURNAL Submitted (15-MAY-1998) to the DDBJ/EMBL/GenBank databases. Hiroko Kawasaki, Osaka University, International Center of Biotechnology; Yamada-oka 2-1, Suita, Osaka 565-0871, Japan (E-mail:kawasaki@icb.osaka-u.ac.jp, Tel:81-6-879-7455, Fax:81-6-879-7454) FEATURES Location/Qualifiers source 1..2590 /organism="Rosellinia necatrix" /strain="IFO32537" /db_xref="taxon:77044" rRNA <1..>2590 /product="18S rRNA" BASE COUNT 656 a 559 c 706 g 661 t 8 others BASE COUNT 117 a 97 c 113 g 88 t 4142 others ORIGIN 1 |caccaccag gagU||u--- -------(-- --aa-acg-g -ac-cgcc-- gccgcagu-- 61 cuc------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- ---------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 -------|-- ----u|Gcuc c---|----- --------ag aa-|AGC--- --------au 781 agccu-g--- ----u-aau- ---------g ---ggu---u ---------g gu-------- 841 --ggu----- ---------- --aagcc--- cu-cgauau- -au------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------GC U|--A----- -----|GUC- agg------- ---------- ---------- 1021 --(ugg---- ---------- ---------- ---------u aauaaucugc uguauuaaau 1081 agugagguua uu-------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 ---------- ---------- ---------- ---------- ---------- ---------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- ---------- -)-------- ---------- 1561 ---------- ---------- ---------- ---------- ---------- ---------- 1621 ---------- c-c--uGGC| --GA|CAUC- C-U-C|AAAU |UG--C-GGG |GAAG----| 1681 C-CC------ ---------- ---------- -|Uacaaca- ---------- ---------- 1741 ---------- ---------- ---------- ---------- --------AA AG|------C 1801 AA-------- UG-AC|U-AC U|-------- ---------- ---------- ---------- 1861 ---|AAG-C- GC-g-c---- -c-uu-(GAA A--------- ---------- ---------- 1921 ---------- -)-aaga-gc --G-C-G-U- G-G|----|C G-G-A-G-C- (guaacg--- 1981 ---------- --------)- GC-U-C--C- G|-------G UA-C|AGU-A AGA-AC-GU- 2041 GA--U-UG-| -cc------- ------|ug- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- --GGG|-UCA -|UC-CGCA| GCC|-AAg-- 2221 |cuc------ ------(--- ---------- ---------- ---------- ---------- 2281 ---------- ----)|-|c| u-----|uau aggga----- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- -------|-- 2461 --------ua ua-|u|g|-- ---------- agag|--AA| GGU|--UCA| GA-GACU-U| 2521 -GAC|GGG-G --A-UG|G|G Ugaacu---- ---------- -(cgcaacca ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 -gguucGCU- |UAA-GA-UA |AA-GUC|C| -|au-----| -----|uaaa ggcac----- 2761 ----(-gaaa ---------- )--------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---------- ---------- 2881 -----guguc cu--u-u-u- a|-------- -------aca acc------- -----c---- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---------- ---------- 3121 ---------- ---------- ---------- ---------- ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ---------- ---------- ---------- ---------- ---------- ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --------cc 4021 uau------- ---------- ---------- ---------- ---------- ---------- 4081 ---------- ---------- ---------- ---------- ---------- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- ---------- ---------- ---------- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ----aac--- -----a-|G- -||gga-gcc ugcggc| // LOCUS Cla.p.1.1 4557 bp RNA RNA 08-OCT-1996 DEFINITION Clavicorona pyxidata.. ACCESSION No information KEYWORDS No information. SOURCE Clavicorona pyxidata. ORGANISM Clavicorona pyxidata. REFERENCE 1 (bases 1 to 2232) AUTHORS Hibbett,D.S. TITLE Phylogenetic evidence for horizontal transmission of group I introns in the nuclear ribosomal DNA of mushroom-forming fungi JOURNAL Mol. Biol. Evol. 13 (7), 903-917 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4557) Corresponding GenBank entry: U59066 LOCUS CPU59066 2135 bp DNA PLN 08-OCT-1996 DEFINITION Clavicorona pyxidata 18S small subunit ribosomal RNA gene, partial sequence. ACCESSION U59066 NID g1613799 VERSION U59066.1 GI:1613799 KEYWORDS . SOURCE Clavicorona pyxidata. ORGANISM Clavicorona pyxidata Eukaryota; Fungi; Basidiomycota; Hymenomycetes; Aphyllophorales; Auriscalpiaceae; Clavicorona. REFERENCE 1 (bases 1 to 2135) AUTHORS Hibbett,D.S. TITLE Phylogenetic evidence for horizontal transmission of group I introns in the nuclear ribosomal DNA of mushroom-forming fungi JOURNAL Mol. Biol. Evol. 13 (7), 903-917 (1996) MEDLINE 96364214 REFERENCE 2 (bases 1 to 2135) AUTHORS Hibbett,D.S. TITLE Direct Submission JOURNAL Submitted (23-MAY-1996) David S Hibbett, Organismic and Evolutionary Biology, Harvard, University Herbaria, 22 Divinity Avenue, Cambridge, MA, 02138, USA FEATURES Location/Qualifiers source 1..2135 /organism="Clavicorona pyxidata" /isolate="CBS 535.90" /db_xref="taxon:48021" rRNA <1..>2135 /product="18s ribosomal RNA" BASE COUNT 544 a 461 c 586 g 539 t 5 others BASE COUNT 107 a 112 c 137 g 82 t 4119 others ORIGIN 1 |~~ccaccag gagU||a--- -------(-- --aac--gc- aac-agcuua gccgcagugg 61 cuc------- ---------- --)------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- ---------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 -------|-- ----u|Gcuc c---|----- --------ga ac-|AGC--- ---------- 781 agccc(gaaa --)gg-gug- --------(a gguggu---u u-a-----aa ag-------- 841 --ccuug-ag guuc-gau-c --cgaggacc ucuaaagcga aau------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------GC U|--A----- -----|GUC- UCcc------ ---------- ---------- 1021 --(ucg---- ---------- ---------- ---------u ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 ---------- ---------- ---------- ---------- ---------- ---------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- ---------- -)-------- ---------- 1561 ---------- ---------- ---------- ---------- ---------- ---------- 1621 ---------g g-G--GGGC| --GA|CACC- U-U-C|AAAU |UG-AC-GGG |GAAC----| 1681 U-CC------ ---------- ---------- -|U------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- --------AA AG|------C 1801 UC-------- AG-AG|C-AC C|-------- ---------- ---------- ---------- 1861 ---|AAG-C- UU-c-gu--- -u-cc-(GAA A--------- ---------- ---------- 1921 ---------- -)-ggg--cg --G-G-G-U- G-G|----|C C-A-G-G-U- (uaaua---- 1981 ---------- --------)- GC-C-U-CG- G|-------G UA-C|GGU-A AAA-GA-CU- 2041 CUc-G-AG-| -A-------- ------|ug- ---------- ---------- --(uu-a--- 2101 ---)------ ---------- -ca|-----a u|-------- ---------- ---------- 2161 ---------- ---------- ---------- --GGA|-CGA -|UC-CGCA| GCC|-AAgg- 2221 |ccc------ ------(--- ---------- ---------- ---------- ---------- 2281 ---------- ----)|-|U| ac----|ggc uucccu---- ---------- ---------- 2341 (u-cgc---- ---------- ---------- ---------- ---------- ---------- 2401 -------)-- ---------- ---------- ---------- ---------- -------|-- 2461 -ggggug-ag cu-|A|C|-- ---------- -ggg|-aCA| GGU|--UCA| GA-GACU-A| 2521 -GAU|GGA-G --G-UG|G|G UCgucg---- ---------- -(cgcgu--- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------) ---------- 2701 -cgacGGCU- |UAA-GG-UA |UA-GUC|C| -|GU-----| -----|ucgc gagc------ 2761 ----(-GAAA ---------- )--------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---------- ---------- 2881 --|----gcu cg--a-u-g- a|-------- --|-gguuu- ---------- -(aggu---- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---------- ---------- 3121 ---------- ---------- ---------- ---------- ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ---------- ---------- ---------- ---------- ---------- ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---|------ ---------- --------aa 4021 acc|------ ---------- ---------- ---------- ---------- ---------- 4081 ---------- ---------- ---------- ---------- ---------- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- ---------- ---------- ---------- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------| ---cgccuuu gacaaaaac| -----AC|G- -||gga-gcc ugcggc| // LOCUS Len.m.1.1 4557 bp RNA RNA 08-OCT-1996 DEFINITION Lentinellus montanus.; . ACCESSION U59076 KEYWORDS . SOURCE Lentinellus montanus. ORGANISM Lentinellus montanus. REFERENCE 1 (bases 1 to 934) AUTHORS Hibbett,D.S. TITLE fungi Phylogenetic evidence for horizontal transmission of group I introns in the nuclear ribosomal DNA of mushroom-forming JOURNAL Mol. Biol. Evol. 13 (7), 903-917 (1996) STANDARD No information REFERENCE 2 (bases 1 to 934) AUTHORS Hibbett,D.S. TITLE Direct Submission JOURNAL Submitted (23-MAY-1996) David S Hibbett, Organismic and Evolutionary Biology, Harvard, University Herbaria, 22 Divinity Avenue, Cambridge, MA, 02138, USA STANDARD No information COMMENTS Sequence information (bases 1 to 4557) Corresponding GenBank entry: U59076 BASE COUNT 109 a 111 c 124 g 80 t 4133 others ORIGIN 1 |caccaccag gagU||a--- -------(-- --aacacgcu aacaagccua gccgcaguag 61 cuc------- ---------- --)------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- ---------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 -------|-- ----u|Gcuc c---|----- --------ga ac-|AGC--- ---------- 781 agccu(gaaa --)gg-gug- --------(a gguggu---u ucagcccggg gu-------- 841 --gguuuuc- ---------- -aaagccauc cc-aaaucua aau------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------GC U|--A----- -----|GUC- CGcc------ ---------- ---------- 1021 --(ucc---- ---------- ---------- ---------g ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 ---------- ---------- ---------- ---------- ---------- ---------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- ---------- -)-------- ---------- 1561 ---------- ---------- ---------- ---------- ---------- ---------- 1621 ---------g g-U--GGGC| --GA|CACC- U-U-C|AAAU |UG-AC-GGG |GAAC----| 1681 U-CC------ ---------- ---------- -|U------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- --------AA AG|------C 1801 UC-------- GG-UG|C-AC C|-------- ---------- ---------- ---------- 1861 ---|AAG-C- CC-c-auaau au-cc-(GAA A--------- ---------- ---------- 1921 ---------- -)-ggg--ug --G-G-G-U- G-G|----|C C-A-G-G-U- (uaaua---- 1981 ---------- --------)- GC-C-U-CG- G|-------G UA-C|GGU-A AAA-GC-CA- 2041 CU--G-AG-| -A-------- ------|ug- ---------- ---------- --(uu-a--- 2101 ---)------ ---------- -ca|-----a u|-------- ---------- ---------- 2161 ---------- ---------- ---------- --GGA|-CAA -|UC-CGCA| GCC|-AAgg- 2221 |ccc------ ------(--- ---------- ---------- ---------- ---------- 2281 ---------- ----)|-|U| AC----|guc g-cc------ ---------- ---------- 2341 (c-uuc-gg- ---------- ---------- ---------- ---------- ---------- 2401 -------)-- ---------- ---------- ---------- ---------- -------|-- 2461 ----ggc--g au-|A|C|-- ---------- -ggg|-aCA| GGU|--UCA| GA-GACU-A| 2521 -GAU|GGA-G --G-UG|G|G UCgu------ ---------- -(ugcaacau ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------) ---------- 2701 ---acGGCU- |UAA-GG-UA |UA-GUC|C| -|GU-----| -----|cugc aca------- 2761 ----(cGAAA a--------- )--------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---------- ---------- 2881 --|------u gu--g-c-a- g|gu------ --|---ugg- ---------- -(uugc---- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- )--------- ---------- ---------- 3121 ---------- ---------- ---------- ---------- ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ---------- ---------- ---------- ---------- ---------- ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---|------ ---------- --------cc 4021 a--|------ ----un---- ---------- ---------- ---------- ---------- 4081 ---------- ---------- ---------- ---------- ---------- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- ---------- ---------- ---------- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------| ---------- ----aaa--| -----AC|G- -||gga-gcc ugcggc| // LOCUS Len.m.2.1 4557 bp RNA RNA 08-OCT-1996 DEFINITION Lentinellus montanus.. ACCESSION No information KEYWORDS No information. SOURCE Lentinellus montanus. ORGANISM Lentinellus montanus. REFERENCE 1 (bases 1 to 934) AUTHORS Hibbett,D.S. TITLE introns in the nuclear ribosomal DNA of mushroom-forming fungi Phylogenetic evidence for horizontal transmission of group I JOURNAL Mol. Biol. Evol. 13 (7), 903-917 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4557) Corresponding GenBank entry: U59077 LOCUS LMU59077 479 bp DNA PLN 08-OCT-1996 DEFINITION Lentinellus montanus 18S small subunit ribosomal RNA gene, partial sequence. ACCESSION U59077 NID g1613811 VERSION U59077.1 GI:1613811 KEYWORDS . SOURCE Lentinellus montanus. ORGANISM Lentinellus montanus Eukaryota; Fungi; Basidiomycota; Hymenomycetes; Agaricales; Tricholomataceae; Lentinellus. REFERENCE 1 (bases 1 to 479) AUTHORS Hibbett,D.S. TITLE Phylogenetic evidence for horizontal transmission of group I introns in the nuclear ribosomal DNA of mushroom-forming fungi JOURNAL Mol. Biol. Evol. 13 (7), 903-917 (1996) MEDLINE 96364214 REFERENCE 2 (bases 1 to 479) AUTHORS Hibbett,D.S. TITLE Direct Submission JOURNAL Submitted (23-MAY-1996) David S Hibbett, Organismic and Evolutionary Biology, Harvard, University Herbaria, 22 Divinity Avenue, Cambridge, MA, 02138, USA FEATURES Location/Qualifiers source 1..479 /organism="Lentinellus montanus" /isolate="VT 246" /db_xref="taxon:5355" rRNA <1..>479 /product="18s ribosomal RNA" BASE COUNT 123 a 113 c 143 g 95 t 5 others ORIGIN BASE COUNT 107 a 107 c 121 g 80 t 4142 others ORIGIN 1 |gcacaccag gagU||a--- -------(-- --aacacgcu aacaagccua gccgcaguag 61 cuc------- ---------- --)------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- ---------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 -------|-- ----u|Gcuc c---|----- --------ga ac-|AGC--- ---------- 781 agccu(gaaa --)gg-gug- --------(a gguggu---u ucagcccggg gu-------- 841 --gguuuuc- ---------- -aaagccauc cc-aaaucua aau------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------GC U|--A----- -----|GUC- CGcc------ ---------- ---------- 1021 --(ucc---- ---------- ---------- ---------g ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 ---------- ---------- ---------- ---------- ---------- ---------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- ---------- -)-------- ---------- 1561 ---------- ---------- ---------- ---------- ---------- ---------- 1621 ---------g g-U--GGGC| --GA|CACC- U-U-C|AAAU |UG-AC-GGG |GAAC----| 1681 U-CC------ ---------- ---------- -|U------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- --------AA AG|------C 1801 UC-------- GG-UG|C-AC C|-------- ---------- ---------- ---------- 1861 ---|AAG-C- CC-c-auaau au-cc-(GAA A--------- ---------- ---------- 1921 ---------- -)-ggg--ug --G-G-G-U- G-G|----|C C-A-G-G-U- (uaaua---- 1981 ---------- --------)- GC-C-U-CG- G|-------G UA-C|GGU-A AAA-GC-CA- 2041 CU--G-AG-| -A-------- ------|ug- ---------- ---------- --(uu-a--- 2101 ---)------ ---------- -ca|-----a u|-------- ---------- ---------- 2161 ---------- ---------- ---------- --GGA|-CAA -|UC-CGCA| GCC|-AAgg- 2221 |ccc------ ------(--- ---------- ---------- ---------- ---------- 2281 ---------- ----)|-|U| AC----|guc g-cc------ ---------- ---------- 2341 (c-uuc-gg- ---------- ---------- ---------- ---------- ---------- 2401 -------)-- ---------- ---------- ---------- ---------- -------|-- 2461 ----ggc--g au-|A|C|-- ---------- -ggg|-aCA| GGU|--UCA| GA-GACU-A| 2521 -GAU|GGA-G --G-UG|G|G UCgu------ ---------- -(ugcaacau ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------) ---------- 2701 ---acGGCU- |UAA-GG-UA |UA-GUC|C| -|GU-----| -----|cugc aca------- 2761 ----(cGAAA a--------- )--------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---------- ---------- 2881 --|------u gu--g-c-a- g|gu------ --|---ugg- ---------- -(uugc---- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- )--------- ---------- ---------- 3121 ---------- ---------- ---------- ---------- ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ---------- ---------- ---------- ---------- ---------- ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---|------ ---------- --------cc 4021 a--|------ ----ua---- ---------- ---------- ---------- ---------- 4081 ---------- ---------- ---------- ---------- ---------- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- ---------- ---------- ---------- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------| ---------- ------a--| -----nC|-- -||gga-gcu ~~~~~~| // LOCUS Len.o.1.1 4557 bp RNA RNA 08-OCT-1996 DEFINITION Lentinellus omphalodes.; . ACCESSION U59078 KEYWORDS . SOURCE Lentinellus omphalodes. ORGANISM Lentinellus omphalodes. REFERENCE 1 (bases 1 to 2125) AUTHORS Hibbett,D.S. TITLE introns in the nuclear ribosomal DNA of mushroom-forming fungi Phylogenetic evidence for horizontal transmission of group I JOURNAL Mol. Biol. Evol. 13 (7), 903-917 (1996) STANDARD No information REFERENCE 2 (bases 1 to 2125) AUTHORS Hibbett,D.S. TITLE Direct Submission JOURNAL Submitted (23-MAY-1996) David S Hibbett, Organismic and Evolutionary Biology, Harvard, University Herbaria, 22 Divinity Avenue, Cambridge, MA, 02138, USA STANDARD No information COMMENTS Sequence information (bases 1 to 4557) Corresponding GenBank entry: U59078 BASE COUNT 110 a 111 c 127 g 91 t 4118 others ORIGIN 1 |caccaccag gagU||a--- -------(-- --aacacgcu aacaagccua gccgcaguag 61 cuc------- ---------- --)------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- ---------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 -------|-- ----u|Gcuc c---|----- --------ga ac-|AGC--- ---------- 781 agccu(gaaa --)gg-gug- --------(a gguggu---u ucagcccggg gu-------- 841 --gguuuuuu uuuc-uuu-u caaagccauc cc-aaaucua aau------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------GC U|--A----- -----|GUC- CGcc------ ---------- ---------- 1021 --(ucc---- ---------- ---------- ---------g ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 ---------- ---------- ---------- ---------- ---------- ---------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- ---------- -)-------- ---------- 1561 ---------- ---------- ---------- ---------- ---------- ---------- 1621 ---------g g-U--GGGC| --GA|CACC- U-U-C|AAAU |UG-AC-GGG |GAAC----| 1681 U-CC------ ---------- ---------- -|U------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- --------AA AG|------C 1801 UC-------- GG-UG|C-AC C|-------- ---------- ---------- ---------- 1861 ---|AAG-C- CC-c-auaau au-cc-(GAA A--------- ---------- ---------- 1921 ---------- -)-ggg--ug --G-G-G-U- G-G|----|C C-A-G-G-U- (uaaua---- 1981 ---------- --------)- GC-C-U-CG- G|-------G UA-C|GGU-A AAA-GC-CA- 2041 CU--G-AG-| -A-------- ------|ug- ---------- ---------- --(uu-a--- 2101 ---)------ ---------- -ca|-----a u|-------- ---------- ---------- 2161 ---------- ---------- ---------- --GGA|-CAA -|UC-CGCA| GCC|-AAgg- 2221 |ccc------ ------(--- ---------- ---------- ---------- ---------- 2281 ---------- ----)|-|U| AC----|guc gucccu---- ---------- ---------- 2341 (u-cgg---- ---------- ---------- ---------- ---------- ---------- 2401 -------)-- ---------- ---------- ---------- ---------- -------|-- 2461 ---gggguug au-|A|C|-- ---------- -ggg|-aCA| GGU|--UCA| GA-GACU-A| 2521 -GAU|GGA-G --G-UG|G|G UCgu------ ---------- -(ugcaacau ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------) ---------- 2701 ---acGGCU- |UAA-GG-UA |UA-GUC|C| -|GG-----| -----|cugc aca------- 2761 ----(cGAAA a--------- )--------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---------- ---------- 2881 --|------u gu--g-c-a- g|-------- --|-guugg- ---------- -(uugc---- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- )--------- ---------- ---------- 3121 ---------- ---------- ---------- ---------- ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ---------- ---------- ---------- ---------- ---------- ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---|------ ---------- --------cc 4021 aau|------ ---------- ---------- ---------- ---------- ---------- 4081 ---------- ---------- ---------- ---------- ---------- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- ---------- ---------- ---------- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------| ---------- ----aaa--| -----aC|G- -||gga-gcc ugcggc| // LOCUS Pan.s.1.1 4557 bp RNA RNA 08-OCT-1996 DEFINITION Panellus stipticus.; . ACCESSION U59090 KEYWORDS . SOURCE Panellus stipticus. ORGANISM Panellus stipticus. REFERENCE 1 (bases 1 to 2091) AUTHORS Hibbett,D.S. TITLE fungi Phylogenetic evidence for horizontal transmission of group I introns in the nuclear ribosomal DNA of mushroom-forming JOURNAL Mol. Biol. Evol. 13 (7), 903-917 (1996) STANDARD No information REFERENCE 2 (bases 1 to 2091) AUTHORS Hibbett,D.S. TITLE Direct Submission JOURNAL Submitted (23-MAY-1996) David S Hibbett, Organismic and Evolutionary Biology, Harvard, University Herbaria, 22 Divinity Avenue, Cambridge, MA, 02138, USA STANDARD No information COMMENTS Sequence information (bases 1 to 4557) Corresponding GenBank entry: U59090 BASE COUNT 109 a 86 c 105 g 97 t 4160 others ORIGIN 1 |~~ccaccag gugU||a--- -------(-- --aacuuguu agccacaguu aacuc----- 61 ---------- ---------- --)------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- ---------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 -------|-- ----u|Gcac u---|----- --------aa aa-|AGC--- ---------- 781 agccc(uaac --)gg-gug- --------(a gguggu---u -cagcccuag ag-------- 841 --u------g cgca-aug-- -------acu cuuaaaucua aau------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------GC U|--A----- -----|GUC- UGug----ca ---------- ---------- 1021 --(ucc---- ---------- ---------- ---------u ugugu----- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 ---------- ---------- ---------- ---------- ---------- ---------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- ---------- -)-------- ---------- 1561 ---------- ---------- ---------- ---------- ---------- ---------- 1621 -------ugc a-C--GGGC| --GA|GACC- U-U-C|AAAC |UG--C-GGG |AAAC----| 1681 U-CC------ ---------- ---------- -|Uu------ ---------- ---------- 1741 ---------- ---------- ---------- ---------- --------AG AG|------C 1801 UU-------- UC-AC|U-AC C|-------- ---------- ---------- ---------- 1861 ---|GCu-g- cu-auC---- -A-CU-(GAA A--------- ---------- ---------- 1921 ---------- -)-AGU--Gu --a-guc-u- G-C|a---|C C-a-G-G-G- (Uaaug---- 1981 ---------- --------)- AC-C-U-CG- G|-------G UA-U|GGU-A AUA-AC-GU- 2041 GA--A-AG-| -Auu------ ------|--- ---------- ---------- ---------- 2101 ---------- ---------- ---------- -|-------- ---------- ---------- 2161 ---------- ---------- ---------- --GGA|-CAA -|UC-CGCA| GCC|-AAg-- 2221 |uccc----- ------(--- ---------- ---------- ---------- ---------- 2281 ---------- ----)|-|U| aa----|agg u--------- ---------- ---------- 2341 (a-guu-auu g--------- ---------- ---------- ---------- ---------- 2401 -------)-- ---------- ---------- ---------- ---------- -------|-- 2461 --------ac cu-|A|C|-- ---------- ggga|--AA| GGU|--UCA| GA-GACU-A| 2521 -GAU|GGA-G --G-UU|G|G UCaac----- ---------- -(uaa----- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------) ---------- 2701 --guuGGCU- |UAA-GG-UA |UA-GUC|C| -|GU-----| -----|cucu gcau------ 2761 ----(-GAAA ---------- )--------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---------- ---------- 2881 --|----gug ca--a-g-a- g|-------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---------- ---------- 3121 ---------- ---------- ---------- ---------- ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ---------- ---------- ---------- ---------- ---------- ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- ---------- 4021 ---------- ---------- ---------- ---------- ---------- ---------- 4081 ---------- ---------- ---------- ---------- ---------- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- ---------- ---------- ---------- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------| ---------g uuugaa---| -----AU|G- -||gga-gcc ugcggc| // LOCUS Pro.p.1.1 4557 bp RNA RNA 24-MAY-1996 DEFINITION Protomyces pachydermus.. ACCESSION No information KEYWORDS No information. SOURCE Protomyces pachydermus. ORGANISM Protomyces pachydermus. REFERENCE 1 (bases 1 to 2091) AUTHORS Sugiyama,J. TITLE Direct Submission JOURNAL ) Submitted (10-MAY-1996) to the DDBJ/EMBL/GenBank databases. Junta Sugiyama, The University of Tokyo, The Institute of Molecular and Cellular Biosciences; Yayoi 1-1-1, Bunkyo-ku, Tokyo Japan, 113 (Tel:03-3812-2111(ex.7827), Fax:03-3818-0444 STANDARD No information COMMENTS Sequence information (bases 1 to 4557) Corresponding GenBank entry: D85142 LOCUS POFNSSRRA 3250 bp DNA PLN 20-JUN-1998 DEFINITION Protomyces pachydermus DNA for small subunit rRNA. ACCESSION D85142 NID g1333653 VERSION D85142.1 GI:1333653 KEYWORDS nuclear SSU ribosomal RNA; group-1 intron RNA. SOURCE Protomyces pachydermus DNA. ORGANISM Protomyces pachydermus Eukaryota; Fungi; Ascomycota; Archiascomycetes; Protomycetales; Protomycetaceae; Protomyces. REFERENCE 1 (bases 1 to 3250) AUTHORS Sugiyama,J. TITLE Direct Submission JOURNAL Submitted (10-MAY-1996) to the DDBJ/EMBL/GenBank databases. Junta Sugiyama, The University of Tokyo, The Institute of Molecular and Cellular Biosciences; Yayoi 1-1-1, Bunkyo-ku, Tokyo Japan, 113 (E-mail:ujsugi@hongo.ecc.u-tokyo.ac.jp, Tel:03-3812-2111(ex.7827), Fax:03-3818-0444) REFERENCE 2 (sites) AUTHORS Nishida,H., Tajiri,Y. and Sugiyama,J. TITLE Multiple origins of fungal group I introns located in the same position of nuclear SSU rRNA gene JOURNAL J. Mol. Evol. 46 (4), 442-448 (1998) MEDLINE 98210235 FEATURES Location/Qualifiers source 1..3250 /organism="Protomyces pachydermus" /db_xref="taxon:48148" exon 1..1168 /number=1 rRNA join(1..1668,1515..2114,3224..3250) /product="small subunit rRNA" intron 1169..1514 /number=1 exon 1515..2114 /number=2 intron 2115..3223 /number=2 exon 3224..3250 /number=3 BASE COUNT 866 a 690 c 858 g 836 t BASE COUNT 103 a 85 c 100 g 82 t 4187 others ORIGIN 1 |caccaccag gagU||a--- -------(-- --aacguuua ugucgcaguu aacuc----- 61 ---------- ---------- --)------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- ---------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 -------|-- ----u|Gcuc c---|----- --------ga aa-|AGC--- ---------- 781 cacuc(gaaa --)ga-gug- --------(u gguguc---c uuagag---- ---------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------GC U|--A----- -----|GUC- AG-------- ---------- ---------- 1021 --(ucc---- ---------- ---------- ---------g ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 ---------- ---------- ---------- ---------- ---------- ---------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- ---------- -)-------- ---------- 1561 ---------- ---------- ---------- ---------- ---------- ---------- 1621 ---------- --C--UGGC| --AA|CACA- A-U-C|AAAU |UG--C-GGG |AAAC----| 1681 U-CC------ ---------- ---------- -|Uu------ ---------- ---------- 1741 ---------- ---------- ---------- ---------- --------AG AG|------C 1801 UC-------- AA-GC|U-AC C|-------- ---------- ---------- ---------- 1861 ---|GCU-g- cu-G-C---- -C-CA-(GAG A--------- ---------- ---------- 1921 ---------- -)-UGG--GC --u-g-u-G- G-C|a---|C C-A-G-G-U- (uaacg---- 1981 ---------- --------)- AC-C-U-CG- G|-------G UA-U|GGU-A ACA-AC-GC- 2041 CU--G-AG-| -Auu------ ------|--- ---------- ---------- ---------- 2101 ---------- ---------- ---------- -|-------- ---------- ---------- 2161 ---------- ---------- ---------- --GGA|-CAA -|UC-CGCA| GCC|-AAg-- 2221 |cucccu--- ------(cau ---------- ---------- ---------- ---------- 2281 ---------- ----)|-|-| ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- -------|-- 2461 ---------- ---|-|-|-- --------gg gaag|--AA| GGU|--UCA| GA-GACU-A| 2521 -GAU|GGU-U --G-UG|G|G UUgaacacgu uua------- -(ucugaagu auu------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------) -----ugaac 2701 gguucGGCU- |UAA-GA-UA |UA-GUC|C| a|AU-----| -----|ccaa ugug------ 2761 ----(-GAAA ---------- )--------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---------- ---------- 2881 --|-----cg ca--c-u-g- g|u------- --|-cug--- ---------- -(aaaga--- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- )--------- ---------- ---------- 3121 ---------- ---------- ---------- ---------- ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ---------- ---------- ---------- ---------- ---------- ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---|------ ---------- ---------- 4021 uag|------ ---------- ---------- ---------- ---------- ---------- 4081 ---------- ---------- ---------- ---------- ---------- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- ---------- ---------- ---------- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------| ---------- ----aaa--| -----AU|G- -||gga-gcc ugcg-c| // LOCUS Pro.m.1.1 4557 bp RNA RNA 24-MAY-1996 DEFINITION Protomyces macrosporus.; nuclear small subunit rRNA; group-1 intron RNA. ACCESSION D85143 KEYWORDS nuclear small subunit rRNA; group-1 intron RNA. SOURCE Protomyces macrosporus. ORGANISM Protomyces macrosporus. REFERENCE 1 (bases 1 to 2514) AUTHORS Sugiyama,J. TITLE Direct Submission JOURNAL Tokyo Japan, 113 (Tel:03-3812-2111(ex.7827), Fax:03-3818-0444 ) Submitted (10-MAY-1996) to the DDBJ/EMBL/GenBank databases. Junta Sugiyama, The University of Tokyo, The Institute of Molecular and Cellular Biosciences; Yayoi 1-1-1, Bunkyo-ku, STANDARD No information REFERENCE 2 (sites) AUTHORS Nishida,H., Tajiri,Y. and Sugiyama,J. TITLE Group-I introns in the plant parasitic fungus Protomyces JOURNAL Unpublished (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4557) Corresponding GenBank entry: D85143 BASE COUNT 102 a 76 c 98 g 87 t 4194 others ORIGIN 1 |caccaccag gagU||a--- -------(-- --aacguuua ugucgcaguu aacuc----- 61 ---------- ---------- --)------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- ---------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 -------|-- ----u|Gcuc c---|----- --------ga aa-|AGC--- ---------- 781 cgcuc(gaaa --)ga-guca --------(u gguguc---c uugaag---- ---------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------GC U|--A----- -----|GUC- AG-------- ---------- ---------- 1021 --(uuc---- ---------- ---------- ---------g ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 ---------- ---------- ---------- ---------- ---------- ---------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- ---------- -)-------- ---------- 1561 ---------- ---------- ---------- ---------- ---------- ---------- 1621 ---------- --C--UGGC| --GA|CAUu- U-C-C|AAAU |UG--C-GGG |AAAC----| 1681 U-CC------ ---------- ---------- -|Uu------ ---------- ---------- 1741 ---------- ---------- ---------- ---------- --------AG AG|------C 1801 UC-------- AA-GC|U-AC C|-------- ---------- ---------- ---------- 1861 ---|GCC-u- cu-G-U---- -U-UA-(GUG A--------- ---------- ---------- 1921 ---------- -)-UAG--AC --A-Gcu-G- G-C|a---|C C-G-G-G-U- (uaacg---- 1981 ---------- --------)- AC-C-U-CG- G|-------G UA-U|GGU-A AAA-AC-GU- 2041 UU--G-AG-| -Auu------ ------|--- ---------- ---------- ---------- 2101 ---------- ---------- ---------- -|-------- ---------- ---------- 2161 ---------- ---------- ---------- --GGA|-CAA -|UC-CGCA| GCC|-AG--- 2221 |cuuccu--- ------(uga g--------- ---------- ---------- ---------- 2281 ---------- ----)|-|-| ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- -------|-- 2461 ---------- ---|-|-|-- --------ag gaag|--AA| GGU|--UCA| GA-GACU-A| 2521 -GAU|GGA-U --G-UG|G|G UGaagucuuu g--------- -(gaua---- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------) ------ugaa 2701 gauuuUGCU- |UAA-GA-UA |UA-GUC|C| a|AU-----| -----|ccaa agcg------ 2761 ----(-GAGA ---------- )--------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---------- ---------- 2881 --|-----cg ca--u-u-g- g|u------- --|-uac--- ---------- -(aacaa--- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- )--------- ---------- ---------- 3121 ---------- ---------- ---------- ---------- ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ---------- ---------- ---------- ---------- ---------- ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---|------ ---------- ---------- 4021 gua|------ ---------- ---------- ---------- ---------- ---------- 4081 ---------- ---------- ---------- ---------- ---------- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- ---------- ---------- ---------- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------| ---------- ---gaaa--| -----AU|G- -||gga-gcc ugcg-c| // LOCUS Pro.i.1.1 4557 bp RNA RNA 28-JAN-191 DEFINITION Protomyces inouyei. ACCESSION No information KEYWORDS No information. SOURCE Protomyces inouyei. ORGANISM Protomyces inouyei. REFERENCE 1 (bases 1 to 2514) AUTHORS Nishida,H. TITLE 18S rRNA gene of Protomyces inouyei JOURNAL Unpublished (1992) STANDARD No information COMMENTS Sequence information (bases 1 to 4557) Corresponding GenBank entry: D11377 intron 1135..1474 LOCUS POI6898 2476 bp DNA PLN 03-FEB-1999 DEFINITION P.inouyei gene for 18S rRNA. ACCESSION D11377 NID g303753 VERSION D11377.1 GI:303753 KEYWORDS 26S rRNA. SOURCE Protomyces inouyei (strain:IFO6898) DNA. ORGANISM Protomyces inouyei Eukaryota; Fungi; Ascomycota; Archiascomycetes; Protomycetales; Protomycetaceae; Protomyces. REFERENCE 1 (bases 1 to 2476) AUTHORS Nishida,H. TITLE Direct Submission JOURNAL Submitted (03-JUN-1992) to the DDBJ/EMBL/GenBank databases. Hiromi Nishida, Univ. of Tokyo, Inst. of Molecular and Cellular Biosciences,; Yayoi 1-1-1, Bunkyo-ku, Tokyo 113, Japan (E-mail:jsugi@tansei.cc.u-tokyo.ac.jp, Tel:03-3812-2111(ex.7828), Fax:03-3818-0444) REFERENCE 2 (bases 1 to 2476) AUTHORS Nishida,H., Blanz,P.A. and Sugiyama,J. TITLE The higher fungus Protomyces inouyei has two group I introns in the 18S rRNA gene JOURNAL J. Mol. Evol. 37 (1), 25-28 (1993) MEDLINE 93367814 COMMENT Submitted (03-Jun-1992) to DDBJ by: Hiromi Nishida Institute of Molecular and Cellular Biosciences University of Tokyo 1-1-1 Yayoi, Bunkyo-ku Tokyo Japan Phone: 03-3812-2111 x7828 Email: jsugi@tansei.cc.u-tokyo.ac.jp Fax: 03-3818-0444. FEATURES Location/Qualifiers source 1..2476 /organism="Protomyces inouyei" /strain="IFO6898" /db_xref="taxon:27332" intron 1135..1474 intron 2077..2469 BASE COUNT 669 a 506 c 656 g 645 t BASE COUNT 105 a 79 c 97 g 80 t 4196 others ORIGIN 1 |~~~~accag gagU||a--- -------(-- --aacguuua ugucgcaguu aacuc----- 61 ---------- ---------- --)------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- ---------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 -------|-- ----u|Gcuc c---|----- --------ga aa-|AGC--- ---------- 781 cacuc(gaaa --)ga-gug- --------(u gguguc---c uuagag---- ---------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------GC U|--A----- -----|GUC- AG-------- ---------- ---------- 1021 --(uac---- ---------- ---------- ---------g ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 ---------- ---------- ---------- ---------- ---------- ---------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- ---------- -)-------- ---------- 1561 ---------- ---------- ---------- ---------- ---------- ---------- 1621 ---------- --C--UGGC| --AA|CACA- A-U-C|AAAU |UG--C-GGG |AAAC----| 1681 U-CC------ ---------- ---------- -|Uu------ ---------- ---------- 1741 ---------- ---------- ---------- ---------- --------AG AG|------C 1801 UC-------- AA-GC|U-AC C|-------- ---------- ---------- ---------- 1861 ---|GCU-G- CU-G-C---- -C-CA-(GAG A--------- ---------- ---------- 1921 ---------- -)-UGG--GU --U-G-U-G- G-C|a---|C C-A-G-G-U- (uaacg---- 1981 ---------- --------)- AC-C-U-CG- G|-------G UA-U|GGU-A ACA-AC-GC- 2041 UU--G-AG-| -Auu------ ------|--- ---------- ---------- ---------- 2101 ---------- ---------- ---------- -|-------- ---------- ---------- 2161 ---------- ---------- ---------- --GGA|-CAA -|UC-CGCA| GCC|-AAg-- 2221 |cucccu--- ------(cau ---------- ---------- ---------- ---------- 2281 ---------- ----)|-|-| ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- -------|-- 2461 ---------- ---|-|-|-- --------gg gaag|--AA| GGU|--UCA| GA-GACU-A| 2521 -GAU|GGU-U --G-UG|G|G UUgaac---- ---------- -(acacguuu aauugaaaca 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------) ---------- 2701 -guucAGCU- |UAA-GA-UA |UA-GUC|C| a|AU-----| -----|ccag ugug------ 2761 ----(-GAAA ---------- )--------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---------- ---------- 2881 --|-----cg ca--c-u-g- g|-------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- )--------- ---------- ---------- 3121 ---------- ---------- ---------- ---------- ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ---------- ---------- ---------- ---------- ---------- ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- ---------- 4021 ---------- ---------- ---------- ---------- ---------- ---------- 4081 ---------- ---------- ---------- ---------- ---------- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- ---------- ---------- ---------- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------| --ucuaaaag auagaaa--| -----AU|G- -||gga-gcc ugcggc| // LOCUS Pro.l.1.1 4557 bp RNA RNA 24-JUN-1994 DEFINITION Protomyces lactucae. str. IFO6899. ACCESSION No information KEYWORDS No information. SOURCE Protomyces lactucae. str. IFO6899. ORGANISM Protomyces lactucae. REFERENCE 1 (bases 1 to 2514) AUTHORS Nishida,H. and Sugiyama,J. JOURNAL Unpublished (1993) STANDARD No information COMMENTS Sequence information (bases 1 to 4557) Corresponding GenBank entry: D14164 LOCUS PLDIFO689B 2083 bp DNA PLN 03-FEB-1999 DEFINITION Protomyces lactucae-debilis gene for 18S rRNA, containing group I intron. ACCESSION D14164 NID g505124 VERSION D14164.1 GI:505124 KEYWORDS 18S rRNA; group I intron; self-splicing RNA. SOURCE Protomyces lactucae (sub_species:debilis, strain:IFO6899) DNA. ORGANISM Protomyces lactucae Eukaryota; Fungi; Ascomycota; Archiascomycetes; Protomycetales; Protomycetaceae; Protomyces. REFERENCE 1 (bases 1 to 2083) AUTHORS Nishida,H. TITLE Direct Submission JOURNAL Submitted (23-JAN-1993) to the DDBJ/EMBL/GenBank databases. Hiromi Nishida, Univ. of Tokyo, Inst. of Molecular and Cellular Biosciences,; Yayoi 1-1-1, Bunkyo-ku, Tokyo 113, Japan (E-mail:jsugi@tansei.cc.u-tokyo.ac.jp, Tel:03-3812-2111(ex.7828), Fax:03-3818-0444) REFERENCE 2 (sites) AUTHORS Nishida,H. and Sugiyama,J. TITLE Archiascomycetes:detection of a major new lineage within the Ascomycota JOURNAL Mycoscience 35, 361-366 (1994) REFERENCE 3 (bases 1137 to 1476) AUTHORS Nishida,H. and Sugiyama,J. TITLE A common group I intron between a plant parasitic fungus and its host JOURNAL Mol. Biol. Evol. 12 (5), 883-886 (1995) MEDLINE 96073456 FEATURES Location/Qualifiers source 1..2083 /organism="Protomyces lactucae" /strain="IFO6899" /sub_species="debilis" /db_xref="taxon:34347" rRNA 1..2083 /product="18S rRNA" intron 1137..1476 /note="Which was located in the same site as the Protomyces inouyei intron B.; group I intron" BASE COUNT 557 a 424 c 544 g 558 t BASE COUNT 103 a 83 c 99 g 80 t 4192 others ORIGIN 1 |caccaccag gagU||a--- -------(-- --aacguuua ugucgcaguu aacuc----- 61 ---------- ---------- --)------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- ---------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 -------|-- ----u|Gcuc c---|----- --------ga aa-|AGC--- ---------- 781 cacuc(gaag --)ga-gug- --------(u gguguc---c uuagag---- ---------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------GC U|--A----- -----|GUC- AG-------- ---------- ---------- 1021 --(uac---- ---------- ---------- ---------g ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 ---------- ---------- ---------- ---------- ---------- ---------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- ---------- -)-------- ---------- 1561 ---------- ---------- ---------- ---------- ---------- ---------- 1621 ---------- --C--UGGC| --AA|CACA- A-U-C|AAAU |UG--C-GGG |AAAC----| 1681 U-CC------ ---------- ---------- -|Uu------ ---------- ---------- 1741 ---------- ---------- ---------- ---------- --------AG AG|------C 1801 UC-------- AA-GC|U-AC C|-------- ---------- ---------- ---------- 1861 ---|GCU-G- CU-G-C---- -C-CA-(GAG A--------- ---------- ---------- 1921 ---------- -)-UGG--GU --U-G-U-G- G-C|a---|C C-A-G-G-U- (uaacg---- 1981 ---------- --------)- AC-C-U-CG- G|-------G UA-U|GGU-A ACA-AC-GC- 2041 UU--G-AG-| -Auu------ ------|--- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- --GGA|-CAA -|UC-CGCA| GCC|-AAg-- 2221 |cucccu--- ------(cac ---------- ---------- ---------- ---------- 2281 ---------- ----)|-|-| ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- -------|-- 2461 ---------- ---|-|-|-- --------gg gaag|--AA| GGU|--UCA| GA-GACU-A| 2521 -GAU|GGU-U --G-UG|G|G UUgaac---- ---------- -(acacguuu a-uugaaaca 2581 u--------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------) ---------- 2701 -guucGGCU- |UAA-GA-UA |UA-GUC|C| a|AU-----| -----|ccag ugug------ 2761 ----(-GAAA ---------- )--------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---------- ---------- 2881 --|-----cg ca--c-u-g- g|-------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---------- ---------- 3121 ---------- ---------- ---------- ---------- ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ---------- ---------- ---------- ---------- ---------- ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- ---------- 4021 ---------- ---------- ---------- ---------- ---------- ---------- 4081 ---------- ---------- ---------- ---------- ---------- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- ---------- ---------- ---------- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------| --ucuaaaag auagaaa--| -----AU|G- -||gga-gcc ugcggc| // LOCUS Ben.y.1.1 4557 bp RNA RNA 09-APR-1996 DEFINITION Bensingtonia yamatoana.; small subunit ribosomal RNA. ACCESSION D38239 KEYWORDS small subunit ribosomal RNA. SOURCE Bensingtonia yamatoana. ORGANISM Bensingtonia yamatoana. REFERENCE 1 (bases 1 to 2658) AUTHORS Takashima,M. TITLE Direct Submission JOURNAL Submitted (14-SEP-1994) to the DDBJ/EMBL/GenBank databases. Masako Takashima, The Institute of Physical and Chemical Research (RIKEN), Japan Collection of Microorganisms; 2-1 Hirosawa, Wako, Saitama 351-01, Japan (E-mail:masako@ulmus .riken.go.jp, Tel: 048-462-1111(ex.5115), Fax:048-462-4617) STANDARD No information REFERENCE 2 (bases 1 to 2658) AUTHORS Takashima,M., Suh,S. and Nakase,T. TITLE Phylogenetic relationships among the species of the genus Bensingtonia and related taxa based on the small subunit ribosomal DNA sequences JOURNAL J. Gen. Appl. Microbiol. 41, 131-141 (1995) STANDARD No information COMMENTS Organism information Culture collection: JCM 2896 Sequence information (bases 1 to 4557) Corresponding GenBank entry: D38239 Submitted (14-Sep-1994) to DDBJ by: Masako Takashima Japan Collection of Microorganisms The Institute of Physical and Chemical Research (RIKEN) R2-1 Hirosawa, Wako Saitama 351-01 Japan Phone: 048-462-1111 Email: masako@ullmus.riken.go.jp Fax: 048-462-4617. BASE COUNT 132 a 92 c 123 g 131 t 4079 others ORIGIN 1 |caccaccag gugU||a--- -------(-- --aacuuuua agucgcaguu -acuc----- 61 ---------- ---------- --)------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- ---------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 -------|-- ----u|Gcac u---|----- --------ga au-|AG---- ---------c 781 agccc(uaac --)gg-gu-- --------(g aggugg---u ugcgcuuauc aa-------- 841 --acaaaugu aaau-gcu-a gugagauuau aauc------ ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 ---------C U|--A----- -----|GUC- uu-------g uu-auac--- -----g---- 1021 ag(acu---- ---------- ---------- ---------g ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 ---------- ---------- ---------- ---------- ---------- ---------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- ---------- -)-------- ----cu---- 1561 ---------- ---------- ---------- ---------- ---------- ---------- 1621 ----uuaugg u-c--uuGC| --GA|GACC- C-U-C|AAAC |UG--C-GGG |AAAG----| 1681 U-CU------ ---------- ---------- -|Ua------ ---------- ---------- 1741 ---------- ---------- ---------- ---------- --------AA AA|------C 1801 AC-------- GC-UA|C-AC U|-------- ---------- ---------- ---------- 1861 ---|AAG-c- ua-u-g-u-- -u-uc-(GAA A--------- ---------- ---------- 1921 ---------- -)-gau--ca --u-a-g-U- G-G|----|C C-G-G-G-G- (Uaaug---- 1981 ---------- --------)- AC-C-U-AG- G|-------G UA-U|AGU-A AAA-GC-GA- 2041 GC--G-UG-| -uu------- ------|ug- ---------- ---------- --(ug-c--- 2101 ---)------ ---------- -ca|-----a u|-------- ---------- ---------- 2161 ---------- ---------- ---------- --AGA|-UUA -|UC-CGCA| UCC|-AAg-- 2221 |-uccc---- ------(--- ---------- ---------- ---------- ---------- 2281 ---------- ----)|-|U| aa-a--|gua uggcaugc-- ---------- ---------- 2341 (u-ccg---- ---------- ---------- ---------- ---------- ---------- 2401 -------)-- ---------- ---------- ---------- ---------- -------|gc 2461 auggcau-ua ca-|A|u|-- ---------- ggga|--AA| GGU|--UCA| GA-GACU-A| 2521 -GAU|GGG-G --G-UC|G|G UUcuuucc-- ---------- -(ggau---- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------) ---------g 2701 ggaagGGUU- |UAA-GG-UA |UA-GUC|C| g|UU-----| a----|caaa cugcaguaca 2761 uu--(-uua- ---------- )--------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---------- ---------- 2881 gauguacguc ug--c-u-u- g|gu------ --|-cug--- ---------- -(cuua---- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- )--------- ---------- ---------- 3121 ---------- ---------- ---------- ---------- ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ---------- ---------- ---------- ---------- ---------- ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- ---------- 4021 uag|------ --------|c uuua-ucuc- ---------- ---------- ---------( 4081 acu------- ---------- ---------- ---------- ---------- ---------- 4141 -)-------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- --------|- ------gaga u-aaag|--- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------| ---------- ----gua--| -----AA|G- -||gga-gcc ugcgg~| // LOCUS Ben.y.2.1 4557 bp RNA RNA 13-JUL-1999 DEFINITION Bensingtonia yamatoana.. ACCESSION No information KEYWORDS No information. SOURCE Bensingtonia yamatoana. ORGANISM Bensingtonia yamatoana. REFERENCE 1 (bases 1 to 2658) AUTHORS Bai,F.Y., Takashima,M. and Nakase,T. TITLE Isolated from Yunnan, China Molecular Phylogenetic Studies on the Bensingtonia Strain JOURNAL Junwu Xitong (1999) In press STANDARD No information COMMENTS Sequence information (bases 1 to 4557) Corresponding GenBank entry: AF101826 LOCUS AF101826 2623 bp DNA PLN 13-JUL-1999 DEFINITION Bensingtonia yamatoana 18S ribosomal RNA gene, partial sequence. ACCESSION AF101826 NID g5453123 VERSION AF101826.1 GI:5453123 KEYWORDS . SOURCE Bensingtonia yamatoana. ORGANISM Bensingtonia yamatoana Eukaryota; Fungi; Basidiomycota; Urediniomycetes; Sporidiobolaceae; mitosporic Sporidiobolaceae; Bensingtonia. REFERENCE 1 (bases 1 to 2623) AUTHORS Bai,F.Y., Takashima,M. and Nakase,T. TITLE Molecular Phylogenetic Studies on the Bensingtonia Strain Isolated from Yunnan, China JOURNAL Junwu Xitong (1999) In press REFERENCE 2 (bases 1 to 2623) AUTHORS Bai,F.Y., Takashima,M. and Nakase,T. TITLE Direct Submission JOURNAL Submitted (27-OCT-1998) Department of Mycology, Institute of Microbiology, Chinese Academy of Sciences, Zhong-Guan-Cun, Beijing 100080, P. R. China FEATURES Location/Qualifiers source 1..2623 /organism="Bensingtonia yamatoana" /strain="AS 2.1973" /db_xref="taxon:4996" /country="China: Yunnan" rRNA <1..>2623 /product="18S ribosomal RNA" BASE COUNT 706 a 526 c 683 g 700 t 8 others BASE COUNT 130 a 94 c 126 g 128 t 4079 others ORIGIN 1 |caccaccag gugU||a--- -------(-- --aacuuuua agucgcaguu -acuc----- 61 ---------- ---------- --)------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- ---------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 -------|-- ----u|Gcac u---|----- --------ga au-|AG---- ---------c 781 agccc(uaac --)gg-gu-- --------(g aggugg---u ugcgcuuauc aa-------- 841 --acaaaugu aaau-gcu-a gugagaucau aauc------ ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 ---------C U|--A----- -----|GUC- uu-------g au-uaua--- -----cg--- 1021 ag(acu---- ---------- ---------- ---------g ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 ---------- ---------- ---------- ---------- ---------- ---------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- ---------- -)-------- ----cu---- 1561 ---------- ---------- ---------- ---------- ---------- ---------- 1621 ----uuaugg u-c--uugc| --GA|GGCC- C-U-C|AAAC |UG--C-GGG |GAAG----| 1681 U-CU------ ---------- ---------- -|Ua------ ---------- ---------- 1741 ---------- ---------- ---------- ---------- --------AU AA|------C 1801 AC-------- GC-UA|C-AC U|-------- ---------- ---------- ---------- 1861 ---|AAG-c- ua-u-g-u-- -u-uc-(GAA A--------- ---------- ---------- 1921 ---------- -)-gau--ca --u-a-g-u- g-g|----|C C-G-G-G-G- (Uaaug---- 1981 ---------- --------)- AC-C-U-AG- G|-------G UA-U|AGU-A AAA-GC-GA- 2041 GC--G-UG-| -uu------- ------|ug- ---------- ---------- --(ug-c--- 2101 ---)------ ---------- -ca|-----a u|-------- ---------- ---------- 2161 ---------- ---------- ---------- --AGA|-UUA -|UC-CGCA| UCC|-AAg-- 2221 |-ucc----- ------(--- ---------- ---------- ---------- ---------- 2281 ---------- ----)|-|U| aa-a--|gua uggcaugc-- ---------- ---------- 2341 (u-ccg---- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- -------|gc 2461 auggcau-ua ca-|A|c|-- ---------- ggga|--AA| GGU|--UCA| GA-GACU-A| 2521 -GAU|GGG-G --G-UC|G|G UUcuuacc-- ---------- -(gaau---- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------g 2701 g-gagGGUU- |UAA-GG-UA |UA-GUC|C| g|UU-----| a----|caaa cugcagugca 2761 uu--(-uua- ---------- )--------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---------- ---------- 2881 gauguacggc ug--c-u-u- g|gc------ --|-cug--- ---------- -(cuua---- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---------- ---------- 3121 ---------- ---------- ---------- ---------- ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ---------- ---------- ---------- ---------- ---------- ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- ---------- 4021 uag|------ --------|c uuua-ucuc- ---------- ---------- ---------( 4081 auu------- ---------- ---------- ---------- ---------- ---------- 4141 -)-------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- --------|- ------gaga u-aaag|--- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------| ---------- ----gua--| -----aA|G- -||gga-gcc ugcggc| // LOCUS Ben.c.1.1 4557 bp RNA RNA 09-APR-1996 DEFINITION Bensingtonia ciliata.; small subunit ribosomal RNA. ACCESSION D38233 KEYWORDS small subunit ribosomal RNA. SOURCE Bensingtonia ciliata. ORGANISM Bensingtonia ciliata. REFERENCE 1 (bases 1 to 2427) AUTHORS Takashima,M. TITLE Direct Submission JOURNAL Research (RIKEN), Japan Collection of Microorganisms; 2-1 Hirosawa, Wako, Saitama 351-01, Japan (E-mail:masako@ulmus .riken.go.jp, Tel: 048-462-1111(ex.5115), Fax:048-462-4617) Submitted (14-SEP-1994) to the DDBJ/EMBL/GenBank databases. Masako Takashima, The Institute of Physical and Chemical STANDARD No information REFERENCE 2 (bases 1 to 2427) AUTHORS Takashima,M., Suh,S. and Nakase,T. TITLE Phylogenetic relationships among the species of the genus Bensingtonia and related taxa JOURNAL Unpublished (1994) STANDARD No information REFERENCE 3 (sites) AUTHORS Takashima,M., Suh,S. and Nakase,T. TITLE Phylogenetic relationships among the species of the genus Bensingtonia and related taxa based on the small subunit ribosomal DNA sequences JOURNAL J. Gen. Appl. Microbiol. 41, 131-141 (1995) STANDARD No information COMMENTS Organism information Culture collection: JCM 6865 Sequence information (bases 1 to 4557) Corresponding GenBank entry: D38233 Submitted (14-Sep-1994) to DDBJ by: Masako Takashima Japan Collection of Microorganisms The Institute of Physical and Chemical Research (RIKEN) R2-1 Hirosawa, Wako Saitama 351-01 Japan Phone: 048-462-1111 Email: masako@ullmus.riken.go.jp Fax: 048-462-4617. BASE COUNT 109 a 66 c 85 g 96 t 4201 others ORIGIN 1 |~~~~accag gagU||uaac -------(-- --aaacaggc ucugcuccaa aca------- 61 ---------- ---------- --)------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- ---------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 -------|-- --gua|Gcuc ----|----- --------ga au-|AG---- ---------- 781 ------agua ---------- --------(c gg-ugg---- ucg------- ---------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 ---------C U|-------- -----|GUC- gu-------- ---------- ---------- 1021 ---uua---- ---------- ---------- ---------a auacuagucu guuuaua--- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 ---------- ---------- ---------- ---------- ---------- ---------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- ---------- ---------- ---------- 1561 ---------- ---------- ---------- ---------- ---------- ---------- 1621 ---------- --ac-aGGC| --AA|GAUC- U-U-C|AAAU |UG--C-GGG |GAAG----| 1681 U-AC------ ---------- ---------- -|U------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- --------GG GG|------C 1801 UC-------u AA-UC|U-AC C|-------- ---------- ---------- ---------- 1861 ---|AAG-u- cauu-g---- -u-cu-(GAA A--------- ---------- ---------- 1921 ---------- -)-agg--ca --u-g-a-U- G-G|----|C C-U-G-A-G- (guaauaa-- 1981 ---------- --------)- CU-C-A--G- G|-------a UA-U|GGU-U ACA-AC-GA- 2041 UUa-G-AG-| -A-------- ------|ug- ---------- ---------- --(uu-a--- 2101 ---)------ ---------- -ca|-----a u|-------- ---------- ---------- 2161 ---------- ---------- ---------- --GUA|-UGA -|UU-CGCA| GCC|-cA--- 2221 |auccc---- ------(uca auau------ ---------- ---------- ---------- 2281 ---------- ----)|-|-| ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---|-|-|-- ---------g ggau|--CA| GGU|--UCA| GA-GACU-A| 2521 -AAC|GGA-G --A-UC|G|A UCuag----- ---------- -(gcauugaa ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------) ---------- 2701 --cuaGGUU- |UAA-GA-UA |UA-GUC|C| a|UU-----| -----|auu- cug------- 2761 ----(-cuua a--------- )--------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---------- ---------- 2881 --|------c ag--c-a-a- u|-------- --|------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---------- ---------- 3121 ---------- ---------- ---------- ---------- ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ---------- ---------- ---------- ---------- ---------- ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- ---------- 4021 ---------- ---------- ---------- ---------- ---------- ---------- 4081 ---------- ---------- ---------- ---------- ---------- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- ---------- ---------- ---------- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------| -----ugaau guauuaa--| -----uu|G- -||gga-gcc ugcggc| // LOCUS Mon.f.1.1 4557 bp RNA RNA 17-APR-1998 DEFINITION Monilinia fructicola.. ACCESSION No information KEYWORDS No information. SOURCE Monilinia fructicola. ORGANISM Monilinia fructicola. REFERENCE 1 (bases 1 to 2427) AUTHORS Snyder,C.L. and Jones,A.L. TITLE between Monilinia fructicola and M. laxa Variation in internal transcribed spacer sequences, arbitrarily primed-PCR products, and group I intron presence JOURNAL Unpublished STANDARD No information COMMENTS Sequence information (bases 1 to 4557) Corresponding GenBank entry: AF010505 LOCUS AF010505 1265 bp DNA PLN 17-APR-1998 DEFINITION Monilinia fructicola 18S ribosomal RNA gene, partial sequence. ACCESSION AF010505 NID g3056718 KEYWORDS . SOURCE Monilinia fructicola. ORGANISM Monilinia fructicola Eukaryotae; mitochondrial eukaryotes; Fungi; Ascomycota; Euascomycetes; Discomycetes; Leotiales; Sclerotiniaceae; Monilinia. REFERENCE 1 (bases 1 to 1265) AUTHORS Snyder,C.L. and Jones,A.L. TITLE Variation in internal transcribed spacer sequences, arbitrarily primed-PCR products, and group I intron presence between Monilinia fructicola and M. laxa JOURNAL Unpublished REFERENCE 2 (bases 1 to 1265) AUTHORS Snyder,C.L. and Jones,A.L. TITLE Direct Submission JOURNAL Submitted (27-JUN-1997) Botany and Plant Pathology, Michigan State University, East Lansing, MI 48824, USA FEATURES Location/Qualifiers source 1..1265 /organism="Monilinia fructicola" /strain="SC-41, KK-20, KK-33, and JB-26" /db_xref="taxon:38448" rRNA join(<1..208,630..>1265) /product="18S ribosomal RNA" intron 209..629 /note="group I intron" BASE COUNT 343 a 266 c 325 g 331 t ----------------------------------------------------------- > > Dear Dr. Gutell, > I am a graduate student under Dr. Alan Jones at Michigan State Universit > > During my research, I discovered a group I intron in the small subunit rDNA > > the brown rot fungus Monilinia fructicola. By examining the sequence by eye > > have identified the conserved sequence elements typical of a group I intron > > I have been unable to generate a diagram of the secondary structure. I have > tried a number of different RNA folding program, but have had no success with > any of them. Dr. Gerard Adams gave me your name and suggested that you may > > able to help me with this problem. If you are able to generate a diagram for > this intron, we will gladly give you credit when it is published. > I have included the sequence of the intron below. This sequence includes > 12 bp of the SSU gene preceding the intron and 17 bp of the gene following t > > intron. > Please, examine this intron at you convenience. However, I have complet > > my degree program and will be leaving MSU on September 26. After this time, > you will have to contact Dr. Jones at 22620alj@msu.edu. > Thank you, in advance, for your assistance. > > > > > ACCACCAGGC GUUAACUGCA GUAACUCUGC GCCGAAAAGC AGCCCGUAAG GGUGAGGUGG UUCGCCUUCA > ACUUAAAUGC UAGUCUAUUA UAAGGCUACA UUCCCAAAUU GCGGGAACAC CCUAAUGCUC UCACUUCCAA > GCUGACAUUU GAAAGAAUGC AGUGGCCAGG CUAAUCACCU GGGUUAUGGA CAUAACGUUC AAGAGAUGAU > ACAAUGGGCU AUCCGCAUCC UUUCCCUUCA UAACGCAUAG UAUAUGGAAA AGGUUCAGAG ACUAAAUGGG > AAUGGCUAGU UUAUUAAAUU CAACGUUUUA GAUGCGUACU GAAGUUAAUG AUACUAGUUA AGAUAUAGUC > CGUCGGUAGG UGAAAACUUA CGGUUCAAAG CUUGAAGCUU GACCCUUGGA AGCAACUCAA UGCUUUCGAG > UGAAUAUAAA ACGGGAGCCU GCGGCUUAAU BASE COUNT 134 a 94 c 102 g 116 t 4111 others ORIGIN 1 |caccaccag gcgU||u--- -------(-- --aacugcag uaacuc---- ---------- 61 ---------- ---------- --)------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- ---------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 -------|-- ----u|Gcgc c---|----- --------ga aa-|AGCA-- ---------- 781 -gccc(guaa --)gg-gu-- --------(g aggugg---( uucg)ccuuc aa-------- 841 --cuuaaa-- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 -------UGC U|--A----- -----|GUC- Ua-------- ---------- ---------- 1021 --(uua---- ---------- ---------- ---------u ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 ---------- ---------- ---------- ---------- ---------- ---------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- ---------- -)-------- ---------- 1561 ---------- ---------- ---------- ---------- ---------- ---------- 1621 ---------- --a--AGGC| --UA|CAUU- C-C-C|AAAU |UG--C-GGG |AACA----| 1681 C-CC------ ---------- ---------- -|U------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- --------AA UG|------C 1801 UC-------- UC-AC|U-UC C|-------- ---------- ---------- ---------- 1861 ---|AAG-C- UGAC-A---- -U-UU-(GAA A--------- ---------- ---------- 1921 ---------- -)-GAA--UG --C-A-G-U- G-G|----|C C-A-G-G-c- (uaauc---- 1981 ---------- --------)- AC-C-U--G- G|------gu ua-u|GGA-C AUA-AC-GUu 2041 caa-G-AG-| -A-------- ------|ug- ---------- ---------- --(au-a--- 2101 ---)------ ---------- -ca|-----a u|-------- ---------- ---------- 2161 ---------- ---------- ---------- --GGG|-CUA -|UC-CGCA| UCC|-u---- 2221 |uucc----- ------(--- ---------- ---------- ---------- ---------- 2281 ---------- ----)|-|c| uuc-----au aac------- ---------- ---------- 2341 (g-cau-a-- ---------- ---------- ---------- ---------- ---------- 2401 -------)-- ---------- ---------- ---------- ---------- ---------- 2461 ------g-ua u--|a|u|-- ---------- ggaa|--AA| GGU|--UCA| GA-GACU-A| 2521 -AAU|GGG-A --A-UG|G|C UAgu-uuauu aaauuca--- -(acguuuua gaugcguac) 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ugaaguuaau 2701 gauacUAGU- |UAA-GA-UA |UA-GUC|C| -|GU-----| -----|cggu aggu------ 2761 ----(-GAAA ---------- )--------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---------- ---------- 2881 --|-----ac uu--a-c-g- g|------uu ca|-aagcu- ---------- -(uga----- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---------- ---------- 3121 ---------- ---------- ---------- ---------- ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ---------- ---------- ---------- ---------- ---------- ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---|------ ---------- --------ag 4021 cuu|------ ----gacc|c uugg-aagca ---------- ---------- ---------( 4081 acucaa)--- ---------- ---------- ---------- ---------- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- ---------- -----ugcuu u-cgag|--- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------| -------uga auauaaa--| -----AC|G- -||gga-gcc ugcggc| // LOCUS Mon.f.2.1 4557 bp RNA RNA 31-AUG-1997 DEFINITION Monilinia fructicola.. ACCESSION No information KEYWORDS No information. SOURCE Monilinia fructicola. ORGANISM Monilinia fructicola. REFERENCE 1 (bases 1 to 2427) AUTHORS Fulton,C.E. and Brown,A.E. TITLE Use of SSU rDNA group-1 intron to detect M.fructicola JOURNAL Unpublished STANDARD No information COMMENTS Sequence information (bases 1 to 4557) Corresponding GenBank entry: Y14211 LOCUS MFRRNA18S 2094 bp DNA PLN 15-JAN-1998 DEFINITION Monilinia fructicola 18S rRNA gene, exon 1 and exon 2, partial. ACCESSION Y14211 NID g2370262 VERSION Y14211.1 GI:2370262 KEYWORDS 18S ribosomal RNA; 18S rRNA gene. SOURCE Monilinia fructicola. ORGANISM Monilinia fructicola Eukaryota; Fungi; Ascomycota; Euascomycetes; Discomycetes; Leotiales; Sclerotiniaceae; Monilinia. REFERENCE 1 (bases 1 to 2094) AUTHORS Fulton,C.E. and Brown,A.E. TITLE Use of SSU rDNA group-I intron to distinguish Monilinia fructicola from M. laxa and M. fructigena JOURNAL FEMS Microbiol. Lett. 157 (2), 307-312 (1997) MEDLINE 98096839 REFERENCE 2 (bases 1 to 2094) AUTHORS Fulton,C. TITLE Direct Submission JOURNAL Submitted (09-JUL-1997) C. Fulton, The Queens University of Belfast, Department of Applied Plant Science, Newforge Lane, Belfast BT9 5PX, UK FEATURES Location/Qualifiers source 1..2094 /organism="Monilinia fructicola" /isolate="CSL CC684" /specific_host="Prunus domestica" /db_xref="taxon:38448" /dev_stage="mycelia" /tissue_type="mycelium" rRNA join(1..1092,1511..2094) /gene="18S rRNA" /product="18S ribosomal RNA" gene 1..2094 /gene="18S rRNA" BASE COUNT 567 a 433 c 532 g 562 t ORIGIN BASE COUNT 133 a 93 c 102 g 114 t 4115 others ORIGIN 1 |~accaccag gcgU||u--- -------(-- --aacugcag uaacuc---- ---------- 61 ---------- ---------- --)------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- ---------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 -------|-- ----u|Gcgc c---|----- --------aa aa-|AGCA-- ---------- 781 -gccc(guaa --)gg-gu-- --------(g aggugg---( uucg)ccuuc aa-------- 841 --cuuaaa-- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 -------UGC U|--A----- -----|GUC- UA-------- ---------- ---------- 1021 --(uua---- ---------- ---------- ---------u ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 ---------- ---------- ---------- ---------- ---------- ---------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- ---------- -)-------- ---------- 1561 ---------- ---------- ---------- ---------- ---------- ---------- 1621 ---------- --a--AGGC| --UA|CAUU- C-C-C|AAAU |UG--C-GGG |AACA----| 1681 C-CC------ ---------- ---------- -|U------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- --------AA UG|------C 1801 UC-------- UC-AC|U-UC C|-------- ---------- ---------- ---------- 1861 ---|AAG-C- UGAC-A---- -U-UU-(GAA A--------- ---------- ---------- 1921 ---------- -)-GAA--UG --C-A-G-U- G-G|----|C C-A-G-G-c- (uaauc---- 1981 ---------- --------)- AC-C-U--G- G|-------G UA-U|GGA-C AUA-AC-GUc 2041 ga--G-AG-| -a-------- ------|ug- ---------- ---------- --(au-a--- 2101 ---)------ ---------- -ca|-----a u|-------- ---------- ---------- 2161 ---------- ---------- ---------- --GGG|-CUA -|UC-CGCA| UCC|-u---- 2221 |uucc----- ------(--- ---------- ---------- ---------- ---------- 2281 ---------- ----)|-|c| uuc-----au a-c------- ---------- ---------- 2341 (g-cau-a-- ---------- ---------- ---------- ---------- ---------- 2401 -------)-- ---------- ---------- ---------- ---------- ---------- 2461 ------g-ua u--|a|u|-- ---------- ggaa|--AA| GGU|--UCA| GA-GACU-A| 2521 -AAU|GGG-A --A-UG|G|C UAgu-uuauu aaauuca--- -(acguuuua gaugcguac) 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ugaaguuaau 2701 gauacUAGU- |UAA-GA-UA |UA-GUC|C| -|GU-----| -----|cggu aggu------ 2761 ----(-gaaa ---------- )--------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---------- ---------- 2881 --|-----ac uu--a-c-g- g|------uu ca|-aagcu- ---------- -(uga----- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---------- ---------- 3121 ---------- ---------- ---------- ---------- ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ---------- ---------- ---------- ---------- ---------- ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---|------ ---------- --------ag 4021 cuu|------ ----gacc|c uugg-aagca ---------- ---------- ---------( 4081 acucaa)--- ---------- ---------- ---------- ---------- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- ---------- -----ugcuu u-cgag|--- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------| -------uga auauaaa--| -----AC|G- -||gga-gcc ugcggc| // LOCUS Mon.c.1.1 4557 bp RNA RNA 08-JAN-1998 DEFINITION Monodictys castaneae.. ACCESSION No information KEYWORDS No information. SOURCE Monodictys castaneae. ORGANISM Monodictys castaneae. REFERENCE 1 (bases 1 to 2427) AUTHORS Krumbein,W.E. and Haase,G. Sterflinger,K., De Baere,R., de Hoog,G.S., De Wachter,R., TITLE Coniosporium perforans and C.apollinis, two new rock-inhabiting fungi isolated from marble in the Sanctuary of Delos (Cyclades, Greece) JOURNAL Unpublished STANDARD No information COMMENTS Sequence information (bases 1 to 4557) Corresponding GenBank entry: Y11715 LOCUS MCRDNA18S 2213 bp DNA UNA 08-JAN-1998 DEFINITION M.castaneae 18S rRNA gene. ACCESSION Y11715 NID g2765122 KEYWORDS 18S ribosomal RNA; 18S rRNA gene. SOURCE Monodictys castaneae. ORGANISM Monodictys castaneae unclassified. REFERENCE 1 (bases 1 to 2213) AUTHORS Sterflinger,K., De Baere,R., de Hoog,G.S., De Wachter,R., Krumbein,W.E. and Haase,G. TITLE Coniosporium perforans and C.apollinis, two new rock-inhabiting fungi isolated from marble in the Sanctuary of Delos (Cyclades, Greece) JOURNAL Unpublished REFERENCE 2 (bases 1 to 2213) AUTHORS Sterflinger,K. TITLE Direct Submission JOURNAL Submitted (07-MAR-1997) K. Sterflinger, Institute for Biology and Chemistry of the Marine Environment (ICBM), Carl-von-Ossietzky Uni. Oldenburg, PO Box 2503, 26111 Oldenburg, FRG FEATURES Location/Qualifiers source 1..2213 /organism="Monodictys castaneae" /isolate="(Wallr.) Hughes" /strain="CBS No. 100.07" gene 1158..1592 /gene="18S rRNA" intron 1158..1592 /gene="18S rRNA" BASE COUNT 553 a 501 c 605 g 553 t 1 others BASE COUNT 102 a 129 c 140 g 85 t 4101 others ORIGIN 1 |caccaccag gcgU||a--- -------(-- --aacgcauu cgacuugcau ggcgcuucac 61 cgcgccgucg cuaggcuc-- --)------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- ---------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 -------|-- ----u|Gcgc c---|----- --------ag aa-|AGC--- ---------- 781 agccc(gaaa --)gg--ug- ---------a -guggu---u --g-----cc gu-------- 841 --ccuu---- ---------- ---------- ---------a aau------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------GC U|--A----- -----|GUC- gcc------- ---------- ---------- 1021 --(ccc---- ---------- ---------- ---------g gcgacccccu ccguuggggc 1081 cccggggc-- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 ---------- ---------- ---------- ---------- ---------- ---------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- ---------- -)-------- ---------- 1561 ---------- ---------- ---------- ---------- ---------- ---------- 1621 ---------- g-G--CGGC| --GA|GAUG- C-C-U|AAAU |UG--C-GGG |AAAC----| 1681 U-CG------ ---------- ---------- -|C------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- --------GA AG|------U 1801 GC-------U CC-AC|C-AC C|-------- ---------- ---------- ---------- 1861 ---|AAg-c- ug-c-g---- -c-ccc(GAA A--------- ---------- ---------- 1921 ---------- -)gggg--ug --c-a-guu- G-G|----|c c-a-g-g-g- (uaaug---- 1981 ---------- --------)- AC-C-U-CG- G|-------G UA-C|GGU-A ACA-GC-GU- 2041 gga-g-cau| -a-------- ------|ug- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- --UGA|-CAA -|UC-CGCA| GCC|-AAG-- 2221 |cccc----- ------(ucu a--------- ---------- ---------- ---------- 2281 ---------- ----)|-|-| ------|ugg c--------- ---------- ---------- 2341 (c-agc---- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- -------|-- 2461 --------gc ca-|g|u|-- ---------- gggg|--AA| DGU|--UCA| GA-GACU-A| 2521 UAAU|GGC-G ----UC|G|G UUGGCuauau ---------- -(cgaaccgu acggaucgcu 2581 gaa------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -------aua 2701 uaGCgGGCU- |UAA-UG-UA |UA-GUC|C| -|au-----| g----|ccca cgcc------ 2761 ----(-GAAA ---------- )--------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---------- ---------- 2881 --|------g gg--u-g-g- g|-------- ---|auuga- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---------- ---------- 3121 ---------- ---------- ---------- ---------- ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ---------- ---------- ---------- ---------- ---------- ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- ---------- 4021 ---------- ---------- ---------- ---------- ---------- ---------- 4081 ---------- ---------- ---------- ---------- ---------- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- ---------- ---------- ---------- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- -----ccuua aaacgguuca aguuuua|-- -||gga-gca ugcggc| // LOCUS Exo.c.1.1 4557 bp RNA RNA 30-MAR-1999 DEFINITION Exophiala calicioides.. ACCESSION No information KEYWORDS No information. SOURCE Exophiala calicioides. ORGANISM Exophiala calicioides. REFERENCE 1 (bases 1 to 2427) AUTHORS Okada,G., Seifert,K.A., Takematsu,A., Yamaoka,Y., Miyazaki,S. and Tubaki,K. TITLE A molecular phylogenetic reappraisal of the Graphium complex based on 18S rDNA sequences JOURNAL Can. J. Bot. 76, 1495-1506 (1998) STANDARD No information COMMENTS Organism information Culture collection: JCM 9764 Sequence information (bases 1 to 4557) Corresponding GenBank entry: AB007685 LOCUS AB007685 3526 bp DNA PLN 30-MAR-1999 DEFINITION Graphium calicioides gene for 18S rRNA, partial sequence, strain:JCM9764. ACCESSION AB007685 NID g4586365 VERSION AB007685.1 GI:4586365 KEYWORDS 18S ribosomal RNA. SOURCE Graphium calicioides (strain:JCM9764) DNA. ORGANISM Graphium calicioides Eukaryota; Fungi; Ascomycota; Euascomycetes; Chaetothyriales; mitosporic Chaetothyriales. REFERENCE 1 (sites) AUTHORS Okada,G., Seifert,K.A., Takematsu,A., Yamaoka,Y., Miyazaki,S. and Tubaki,K. TITLE A molecular phylogenetic reappraisal of the Graphium complex based on 18S rDNA sequences JOURNAL Can. J. Bot. 76, 1495-1506 (1998) REFERENCE 2 (bases 1 to 3526) AUTHORS Okada,G. and Takematsu,A. TITLE Direct Submission JOURNAL Submitted (28-SEP-1997) to the DDBJ/EMBL/GenBank databases. Gen Okada, The Institute of Physical and Chemical Research (RIKEN), Japan Collection of Microorganisms; Hirosawa 2-1, Wako, Saitama 351-0198, Japan (E-mail:okada@ulmus.riken.go.jp, Tel:+81-48-462-1111(ex.5124), Fax:+81-48-462-4619) COMMENT The sequence was determined by A. Takematsu. FEATURES Location/Qualifiers source 1..3526 /organism="Graphium calicioides" /note="Isolated from single ascospore of the unnamed Capronia-like teleomorph of G. calicioides." /strain="JCM9764" /db_xref="taxon:67621" rRNA join(<1..1139,1654..1912,2280..2619,3520..>3526) /note="Corresponding to 24-1774 nt positon of 18S rRNA S. cerevisiae: Acc#(M27607)" /product="18S rRNA" intron 1140..1653 /note="group I intron just after 1165 nt position in S. cerevisiae" intron 1913..2279 /note="group I intron just after 1427 nt position in S. cerevisiae" intron 2620..3519 /note="group I intron just after 1767 nt position in S. cerevisiae" BASE COUNT 899 a 791 c 949 g 881 t 6 others BASE COUNT 146 a 114 c 140 g 138 t 4019 others ORIGIN 1 |caccaccag gcgU||a--- -------(-- --aacauucg uuucuacagc c----guagu 61 uaacuc---- ---------- --)------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- ---------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 -------|-- ----u|Gcgc cu--|----- ---------a aa-|AGCG-- ---------- 781 -gccc(guaa --)gg-gu-- ---------g aagu------ -ggu-g---- ---------- 841 --ugucc--- ---------- ---uuaaa-- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 -------UGC U|--A----- -----|GUC- UU-------- Uc-agag--- -----a---- 1021 --(gug---- ---------- ---------- ---------a ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 ---------- ---------- ---------- ---------- ---------- ---------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- ---------- -)-------- --u-cu---- 1561 ---------- ---------- ---------- ---------- ---------- ---------- 1621 ----cgaaAA --A---GGC| --AA|CACC- C-U-C|AAAU |UG--C-GGG |AAAG----| 1681 C-CC------ ---------- ---------- -|U------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- --------AA AG|------U 1801 CC-------- CA-CC-U-AC C--------- ---------- ---------- ---------- 1861 ---|AAG-C- C-AU-G---- -GuCC-(GAA A--------- ---------- ---------- 1921 ---------- -)-GGU--CA --U-G-G-U- G-G|----|C C-C-G-G-U- (uaaua---- 1981 ---------- --------)- GC-CaG--G- G|-------G UA-C|GGU-A ACA-AU-GG- 2041 UG--G-GA-| -A-------- ------|ug- ---------- ---------- --(uc-a--- 2101 ----)----- ---------- -------caa u|-------- ---------- ---------- 2161 ---------- ---------- ---------- --GGG|-UGA -|UC-CGCA| GCC|-AAG-- 2221 |CUCC----- ------(--- ---------- ---------- ---------- ---------- 2281 ---------- ----)|-|-| ------|gug g--------- ---------- ---------- 2341 (c-ccg---- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- -------|-- 2461 ------u-ug gc-|A|U|-- ---------- GGAG|--AA| GGU|--UCA| GA-GACU-A| 2521 -AAU|GGG-G --G-UG|G|G UUUUCacagu gg-------- -(cauauaua uauauuuagg 2581 cuuggaaauc gauagaugau caacccuaga uagacaauga aauuuaucug accauuucuc 2641 ggcagucaug uggugucacg uauaugaauu ucauccuguu gccaacauu- -----uuacu 2701 guGAGGGCU- |UAA-GA-UA |UA-GUC|C| -|Aa-----| u----|cccc agg------- 2761 ----(-GAAA ---------- )--------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---------- ---------- 2881 --|------c uu--g-g-g- g|-----u-- ----auga-- ---------- -(cuuacaau 2941 u--------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---------- ---------- 3121 ---------- ---------- ---------- ---------- ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ---------- ---------- ---------- ---------- ---------- ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---|------ ---------- ------uugu 4021 agg|------ ---------- ---------- ---------- ---------- ---------- 4081 ---------- ---------- ---------- ---------- ---------- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- ---------- ---------- ---------- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------| ---------- cccuauuaa| ------U|g- -||-gg-gau gcggcu| // LOCUS Exo.c.2.1 4557 bp RNA RNA 30-MAR-1999 DEFINITION Exophiala calicioides.. ACCESSION No information KEYWORDS No information. SOURCE Exophiala calicioides. ORGANISM Exophiala calicioides. REFERENCE 1 (bases 1 to 2427) AUTHORS Okada,G., Seifert,K.A., Takematsu,A., Yamaoka,Y., Miyazaki,S. and Tubaki,K. TITLE A molecular phylogenetic reappraisal of the Graphium complex based on 18S rDNA sequences JOURNAL Can. J. Bot. 76, 1495-1506 (1998) STANDARD No information COMMENTS Organism information Culture collection: JCM 9765 Sequence information (bases 1 to 4557) Corresponding GenBank entry: AB007686 LOCUS AB007686 3535 bp DNA PLN 30-MAR-1999 DEFINITION Graphium calicioides gene for 18S rRNA, partial sequence, strain:JCM9765. ACCESSION AB007686 NID g4586366 VERSION AB007686.1 GI:4586366 KEYWORDS 18S ribosomal RNA. SOURCE Graphium calicioides (strain:JCM9765) DNA. ORGANISM Graphium calicioides Eukaryota; Fungi; Ascomycota; Euascomycetes; Chaetothyriales; mitosporic Chaetothyriales. REFERENCE 1 (sites) AUTHORS Okada,G., Seifert,K.A., Takematsu,A., Yamaoka,Y., Miyazaki,S. and Tubaki,K. TITLE A molecular phylogenetic reappraisal of the Graphium complex based on 18S rDNA sequences JOURNAL Can. J. Bot. 76, 1495-1506 (1998) REFERENCE 2 (bases 1 to 3535) AUTHORS Okada,G. and Takematsu,A. TITLE Direct Submission JOURNAL Submitted (28-SEP-1997) to the DDBJ/EMBL/GenBank databases. Gen Okada, The Institute of Physical and Chemical Research (RIKEN), Japan Collection of Microorganisms; Hirosawa 2-1, Wako, Saitama 351-0198, Japan (E-mail:okada@ulmus.riken.go.jp, Tel:+81-48-462-1111(ex.5124), Fax:+81-48-462-4619) COMMENT The sequence was determined by A. Takematsu. FEATURES Location/Qualifiers source 1..3535 /organism="Graphium calicioides" /note="Isolated from single ascospore of the unnamed Capronia-like teleomorph of G. calicioides." /strain="JCM9765" /db_xref="taxon:67621" rRNA join(<1..1143,1661..1919,2287..2627,3530..>3535) /note="Corresponding to 24-1774 nt positon of 18S rRNA S. cerevisiae: Acc#(M27607)" /product="18S rRNA" intron 1144..1660 /note="group I intron just after 1165 nt position in S. cerevisiae" intron 1920..2286 /note="group I intron just after 1427 nt position in S. cerevisiae" intron 2628..3529 /note="group I intron just after 1767 nt position in S. cerevisiae" BASE COUNT 904 a 793 c 953 g 881 t 4 others BASE COUNT 150 a 115 c 138 g 138 t 4016 others ORIGIN 1 |caccaccag gcgU||a--- -------(-- --aacauucg uuucuacagc cguaguuaac 61 uc-------- ---------- --)------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- ---------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 -------|-- ----u|Gcgc cu--|----- ---------a aa-|AGC--- ---------- 781 agccc(guaa --)gg-gug- --------aa gucggugugu -ccuuaaau- ---------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------GC U|--A----- -----|GUC- uuu------- ---------- ---------- 1021 --(cag---- ---------- ---------- ---------a gagugaucuc gaa------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 ---------- ---------- ---------- ---------- ---------- ---------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- ---------- -)-------- ---------- 1561 ---------- ---------- ---------- ---------- ---------- ---------- 1621 ---------a --a--aGGC| --AA|CACC- C-U-C|AAAU |UG--C-GGG |AAAG----| 1681 C-CC------ ---------- ---------- -|U------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- --------AA AG|------- 1801 UC-------C CA-CC|U-AC C|-------- ---------- ---------- ---------- 1861 ---|AAG-C- CA-U-G---- -G-UCc(GAA A--------- ---------- ---------- 1921 ---------- -)GACU--CA --U-G-G-U- G-G|----|C C-C-G-G-Uu (-aau----- 1981 ---------- --------)a GC-CaG--G- G|-------G UA-C|GGU-A ACA-AU-GG- 2041 UGG-G--A-| -A-------- ------|ug- ---------- ---------- --(-uca--- 2101 ---)------ ---------- -ca|-----a u|-------- ---------- ---------- 2161 ---------- ---------- ---------- --GGG|-UGA A|UC-CGCA| GCC|-AAG-- 2221 |CUCCGUG-- ------(gcc cgu------- ---------- ---------- ---------- 2281 ---------- ----)|-|u| g-------g- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- -------|-- -------CAU GGAG|--AA| GGU|--UCA| GA-GACU-A| 2521 -AAU|GGG-G --G-UG|G|G Uuuucacagu gg-------- -(cauauaua uauauuuagg 2581 cuuggaaauc gauagaugau caacccuaga uagacaauga aauuuaucug accauuucuc 2641 ggcagucaug uggugucacg uauaugaauu ucauccuguu gccaacauu) -----uuacu 2701 gugaggGCU- |UAA-GA-UA |UA-GUC|C| -|aa-----| u----|cccc agg------- 2761 ----(-GAAA ---------- )--------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---------- ---------- 2881 --|------c uu--g-g-g- g|-------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---------- ---------- 3121 ---------- ---------- ---------- ---------- ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ---------- ---------- ---------- ---------- ---------- ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- ---------- 4021 ---|uau--- ----gacuua aaauuuu--- ---------- ---------- ---------- 4081 ---------- ---------- ---------- ---------- ---------- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- ---------- ---------- ---------- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- --guaggccc uauuaau--- --------g- -||-gg-gau gcggcu| // LOCUS Pyx.a.1.1 4557 bp RNA RNA 02-JAN-1999 DEFINITION Pyxidiophora arvernensis. ACCESSION No information KEYWORDS No information. SOURCE Pyxidiophora arvernensis. ORGANISM Pyxidiophora arvernensis. REFERENCE 1 (bases 1 to 2427) AUTHORS Jones,K.G. and Blackwell,M. TITLE Direct Submission JOURNAL Submitted (14-DEC-1995) Kevin G. Jones, Plant Biology, Louisiana State University, Baton Rouge, LA 70803, USA STANDARD No information COMMENTS Sequence information (bases 1 to 4557) Corresponding GenBank entry: U43339 LOCUS PAU43339 424 bp DNA PLN 10-JAN-2000 DEFINITION Pyxidiophora arvernensis 18S rRNA gene, partial sequence, and type I intron, complete sequence. ACCESSION U43339 NID g4096983 VERSION U43339.1 GI:4096983 KEYWORDS . SOURCE Pyxidiophora arvernensis. ORGANISM Pyxidiophora arvernensis Eukaryota; Fungi; Ascomycota; Laboulbeniales; Pyxidiophoraceae; Pyxidiophora. REFERENCE 1 (bases 1 to 424) AUTHORS Jones,K.G. and Blackwell,M. TITLE Direct Submission JOURNAL Submitted (14-DEC-1995) Kevin G. Jones, Plant Biology, Louisiana State University, Baton Rouge, LA 70803, USA FEATURES Location/Qualifiers source 1..424 /organism="Pyxidiophora arvernensis" /strain="CBS 253.81" /db_xref="taxon:45041" rRNA join(<1..9,413..>424) /product="18S ribosomal RNA" intron 10..412 /note="type I intron" BASE COUNT 112 a 95 c 121 g 96 t BASE COUNT 112 a 95 c 121 g 94 t 4135 others ORIGIN 1 |~~acaccag gggU||a--- -------(-- --aacuucga acuguagccg cagucgcuc- 61 ---------- ---------- --)------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- ---------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 -------|-- ----u|Gcuc cu--|----- ---------a aa-|AGC--- ---------a 781 gccgg(gaaa --)cc-guc- --------(a ggugguaagc uccuugccca ggugggcg-- 841 --aaguauu- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------GC U|--A----- -----|GUC- ---------- ---------- ---------- 1021 --(guc---- ---------- ---------- ---------g uaag------ ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 ---------- ---------- ---------- ---------- ---------- ---------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- ---------- -)-------- ---------- 1561 ---------- ---------- ---------- ---------- ---------- ---------- 1621 ---------- ------GGC| --AA|CACC- C-U-C|AAAU |UG-AC-GGG |AAGU----| 1681 C-CC------ ---------- ---------- -|U------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- --------AA AG|------C 1801 CA-------G CU-GA|G-AC C|-------- ---------- ---------- ---------- 1861 ---|AAG-C- GA-g-u---- -aucc-(GAA A--------- ---------- ---------- 1921 ---------- -)-ggu--gc --U-C-G-U- G-G|----|C C-G-A-G-C- (uaaua---- 1981 ---------- --------)- GC-C-C-UG- G|-------G UA-U|GGU-A AAA-CA-GC- 2041 AGC-U-GG-| -a-------- ------|ua- ---------- ---------- --(uu-a--- 2101 ---)------ ---------- -ca|-----a u|-------- ---------- ---------- 2161 ---------- ---------- ---------- --GGG|-UAA -|UC-CGCA| GCC|-AAG-- 2221 |CUC------ ------(--- -----c---- ---------- ---------- ---------- 2281 ---------- ----)|-|-| ------|uaa a--------- ---------- ---------- 2341 (c-aga---- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- -------|-- 2461 --------uu uau|A|C|-- -----ugcac ggag|--AA| GGU|--UCA| GA-GACU-U| 2521 -GAC|GGG-G --G-UG|G|G Ugcgu----- ---------- -(aauugguu uuuauugaac 2581 ugcuuac--- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------) ---------- 2701 --acgUGCU- |UAA-GA-UA |AA-GUC|C| -|GU-----| -----|ugcu gc-------- 2761 ----(uGUAA ---------- )--------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---------- ---------- 2881 --|------- gc--a-g-g- a|-------- --|caggucu ugguaaccuu ugaccauu-- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---------- ---------- 3121 ---------- ---------- ---------- ---------- ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ---------- ---------- ---------- ---------- ---------- ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- ---------- 4021 ---|------ ---------- ---------- ---------- ---------- ---------- 4081 ---------- ---------- ---------- ---------- ---------- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- ---------- ---------- ---------- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ----aaa--- -------|G- -||gga-g-- ugcggc| // LOCUS Bar.o.1.3 4557 bp RNA RNA 02-MAR-2000 DEFINITION Barrmaelia oxyacanthae.; . ACCESSION AF064048 KEYWORDS . SOURCE Barrmaelia oxyacanthae. ORGANISM Barrmaelia oxyacanthae. REFERENCE 1 (bases 1 to 2828) AUTHORS Winka,K. and Eriksson,O.E. TITLE Relationships of the marine ascomycete Papulosa, based on 18S rDNA sequence analyses JOURNAL unpublished STANDARD No information REFERENCE 2 (bases 1 to 2828) AUTHORS Winka,K. and Eriksson,O.E. TITLE Direct Submission JOURNAL Submitted (08-MAY-1998) Ecological Botany, Umea University, Umea 90187, Sweden STANDARD No information COMMENTS Sequence information (bases 1 to 4557) Corresponding GenBank entry: AF064048 ------------------------------- LOCUS AF064048 2828 bp DNA PLN 02-MAR-2000 DEFINITION Barrmaelia oxyacanthae 18S ribosomal RNA gene, partial sequence. ACCESSION AF064048 VERSION AF064048.1 GI:7140529 KEYWORDS . SOURCE Barrmaelia oxyacanthae. ORGANISM Barrmaelia oxyacanthae Eukaryota; Fungi; Ascomycota; Euascomycetes; Pyrenomycetes; Xylariales; Xylariaceae; Barrmaelia. REFERENCE 1 (bases 1 to 2828) AUTHORS Winka,K. and Eriksson,O.E. TITLE Relationships of the marine ascomycete Papulosa, based on 18S rDNA sequence analyses JOURNAL Unpublished REFERENCE 2 (bases 1 to 2828) AUTHORS Winka,K. and Eriksson,O.E. TITLE Direct Submission JOURNAL Submitted (08-MAY-1998) Ecological Botany, Umea University, Umea 90187, Sweden FEATURES Location/Qualifiers source 1..2828 /organism="Barrmaelia oxyacanthae" /strain="UPSC 2132" /db_xref="taxon:101485" rRNA join(<1..511,885..1320,1617..1784,2229..>2828) /product="18S ribosomal RNA" intron 512..884 /number=1 intron 1321..1616 /number=2 intron 1785..2228 /number=3 BASE COUNT 717 a 659 c 757 g 694 t 1 others BASE COUNT 118 a 128 c 120 g 103 t 4088 others ORIGIN 1 |caccaccag gagU||---- -------(-- -uaac-auag a-uuc--c-- -----gcagc 61 gu-cuc---- ---------- --)------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- ---------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 -------|-- ----u|Gcuc c---|----- --------ca ag-|AGUAU- ---------- 781 acccc(gcga --)gg-ggu- --------(u aggugguuac ccuguacuaa ---------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 ------auGC U|--A----- -----|GUC- AG-------- GC-ugga--- -----u---- 1021 --(gcc---- ---------- ---------- ---------u cuggg----- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 ---------- ---------- ---------- ---------- ---------- ---------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- ---------- -)-------- ---------- 1561 ---------- ---------- ---------- ---------- ---------- ---------- 1621 ----aucuGC --C--UGGC| --GA|CACC- C-U-U|AAAU |UG--C-GGG |AAAC----| 1681 U-CC------ ---------- ---------- -|Ugu----- ---------- ---------- 1741 ---------- ---------- ---------- ---------- --------UA AA|------A 1801 GG-------U CU-AC|U-AC C|-------- ---------- ---------- ---------- 1861 ---|AAG-C- AC-G-U---- -c-ua-(GAA A--------- ---------- ---------- 1921 ---------- -)-uagc-GC --G-U-G-U- G-G|----|C A-G-A-G-Ca (uaacg---- 1981 ---------- --------)- GC-U-C--U- G|-------G UA-C|GGU-A AAA-AC-GU- 2041 AGGcC-CU-| -g-------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- --GGA|-CAA -|UC-CGCA| GCC|-AAG-- 2221 |CCCC----- ------(--- ---------- ---------- ---------- ---------- 2281 ---------- ----)|-|u| uau---|gga gu-------- ---------- ---------- 2341 (a-uuc-c-- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- -------|-- 2461 ------g-cu cc-|C|C|-- ---------- GGGG|--AA| GGU|--UCA| GA-GACU-U| 2521 -AAC|AGG-G --G-UG|G|G CCagc----- ---------- -(uucuac-- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 --gc-GGCC- |UAA-GA-UA |AA-GUC|C| -|au-----| c----|ggcg cau------- 2761 ----(-GAAA ---------- )--------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---------- ---------- 2881 --|-----au gu--c-g-u- c|-------- --|ucuucga aagcgugccc uauaaauugc 2941 uuacauaccc uguaacaggu uacccuguag caaguuaccc uauagacggc acc-uuuucc 3001 uaaac----- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---------- ---------- 3121 ---------- ---------- ---------- ---------- ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ---------- ---------- ---------- ---------- ---------- ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- ---------- 4021 ---------- ---------- ---------- ---------- ---------- ---------- 4081 ---------- ---------- ---------- ---------- ---------- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- ---------- ---------- ---------- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- -----ca|G- -||gga-gcc ugcggc| // LOCUS Cor.pa.1.2 4557 bp RNA RNA 28-JAN-191 DEFINITION Cordyceps paradoxa. ACCESSION No information KEYWORDS No information. SOURCE Cordyceps paradoxa. ORGANISM Cordyceps paradoxa. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 4557) Corresponding GenBank entry: AB027323 LOCUS AB027323 2636 bp DNA PLN 19-APR-2000 DEFINITION Cordyceps paradoxa DNA for 18S ribosomal RNA. ACCESSION AB027323 VERSION AB027323.1 GI:7619921 KEYWORDS . SOURCE Cordyceps paradoxa DNA. ORGANISM Cordyceps paradoxa Eukaryota; Fungi; Ascomycota; Hypocreales; Clavicipitaceae; Cordyceps. REFERENCE 1 (sites) AUTHORS Nikoh,N. and Fukatsu,T. TITLE Interkingdom host jumping underground: Phylogenetic analysis of entomoparasitic fungi of the genus Cordyceps JOURNAL Mol. Biol. Evol. 17, 629-638 (2000) REFERENCE 2 (bases 1 to 2636) AUTHORS Nikoh,N. TITLE Direct Submission JOURNAL Submitted (17-MAY-1999) to the DDBJ/EMBL/GenBank databases. Naruo Nikoh, NIBH, Insect-Parasitic Symbiotic Microorganisms Research Group; 1-1 Higashi, Tsukuba, Ibaraki 305-8566, Japan (E-mail:nikoh@nibh.go.jp, Tel:81-298-54-6087, Fax:81-298-54-6080) FEATURES Location/Qualifiers source 1..2636 /organism="Cordyceps paradoxa" /db_xref="taxon:94208" rRNA 1..2636 /product="18S ribosomal RNA" BASE COUNT 652 a 618 c 771 g 595 t BASE COUNT 108 a 123 c 148 g 70 t 4108 others ORIGIN 1 |caccaccag gggU||a--- -------(-- --aacc---- ---------- -----gcagu 61 ug-cuc---- ---------- --)------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- ---------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 -------|-- ----u|Gccc c---|----- --------ug aa-|AGCA-- ---------- 781 gccgg(gaaa --)cc-ggu- --------(c ccgugggucc uuggccagaa cggccgaaga 841 a--------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 -------uGC U|--A----- -----|GUC- GC-------- uc-cc----- ---------- 1021 --(aaa---- ---------- ---------- ---------a cgag------ ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 ---------- ---------- ---------- ---------- ---------- ---------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- ---------- -)-------- ---------- 1561 ---------- ---------- ---------- ---------- ---------- ---------- 1621 ------gggg --G--CGGC| --GA|CACC- C-U-C|AAAU |UG--C-GGG |AAG-----| 1681 U-CC------ ---------- ---------- -|C------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ------uaaa gc|------C 1801 AA-------- CU-GA|G-AC C|-------- ---------- ---------- ---------- 1861 ---|AAG-C- AG-GCG---- -C-CC-(GAA A--------- ---------- ---------- 1921 ---------- -)-GGG--CC --C-U-G-U- G-G|----|c cga-g-c-u- (agcag---- 1981 ---------- --------)- cc-c-u--g- g|-------G UA-U|GGU-A AAA-CA-GC- 2041 AG--U-UG-| -ga------- ------|ug- ---------- ---------- --(aaa---- 2101 ---)------ ---------- -ca|-----a u|-------- ---------- ---------- 2161 ---------- ---------- ---------- --GGG|-UGA -|UC-CGCA| GCC|-AAG-- 2221 |CUCC----- ------(--- ---------- ---------- ---------- ---------- 2281 ---------- ----)|-|u| aac---|cgg cagucgc--- ---------- ---------- 2341 (g-caa---- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---gcgccgc cgc|A|C|-- ---------- GGGG|--AA| GGU|--UCA| GA-GACU-U| 2521 -GAC|GGG-G --G-UG|G|G uucagugagc aguucu---- -(gggguggc ccucuuagga 2581 gggaagcccu cugg------ ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -ggaacugug 2701 ugcuguGCU- |UAA-GA-UA |AA-GUC|C| -|Gu-----| -----|cuac augcca---- 2761 ----(-AAGC a--------- )--------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---------- ---------- 2881 --|-----ug gu--a-g-a- g|-------- --|------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---------- ---------- 3121 ---------- ---------- ---------- ---------- ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ---------- ---------- ---------- ---------- ---------- ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- ---------- 4021 ---------- ---------- ---------- ---------- ---------- ---------- 4081 ---------- ---------- ---------- ---------- ---------- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- ---------- ---------- ---------- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- cccaguaaa| -----aC|G- -||gga-gcc ugcggc| // LOCUS Cor.sp.1.2 4557 bp RNA RNA 28-JAN-191 DEFINITION Cordyceps sp. 97003. ACCESSION No information KEYWORDS No information. SOURCE Cordyceps sp. 97003. ORGANISM Cordyceps sp. 97003. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 4557) Corresponding GenBank entry: AB027329 LOCUS AB027329 2700 bp DNA PLN 19-APR-2000 DEFINITION Cordyceps sp. 97003 DNA for 18S ribosomal RNA. ACCESSION AB027329 VERSION AB027329.1 GI:7619927 KEYWORDS . SOURCE Cordyceps sp. 97003 DNA. ORGANISM Cordyceps sp. 97003 Eukaryota; Fungi; Ascomycota; Hypocreales; Clavicipitaceae; Cordyceps. REFERENCE 1 (sites) AUTHORS Nikoh,N. and Fukatsu,T. TITLE Interkingdom host jumping underground: Phylogenetic analysis of entomoparasitic fungi of the genus Cordyceps JOURNAL Mol. Biol. Evol. 17, 629-638 (2000) REFERENCE 2 (bases 1 to 2700) AUTHORS Nikoh,N. TITLE Direct Submission JOURNAL Submitted (17-MAY-1999) to the DDBJ/EMBL/GenBank databases. Naruo Nikoh, NIBH, Insect-Parasitic Symbiotic Microorganisms Research Group; 1-1 Higashi, Tsukuba, Ibaraki 305-8566, Japan (E-mail:nikoh@nibh.go.jp, Tel:81-298-54-6087, Fax:81-298-54-6080) FEATURES Location/Qualifiers source 1..2700 /organism="Cordyceps sp. 97003" /db_xref="taxon:94217" rRNA 1..2700 /product="18S ribosomal RNA" BASE COUNT 605 a 695 c 843 g 557 t BASE COUNT 87 a 143 c 154 g 51 t 4122 others ORIGIN 1 |caccaccag gggU||g--- -------(-- --aaccagcg caccgcacug cc---gcagu 61 cg-cuc---- ---------- --)------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- ---------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 -------|-- ----u|Gccc c---|----- --------ua ag-|AGCA-- ---------- 781 gccgg(aaaa --)cc-ggu- --------(c gggugggcuc uuggccgcca uggccgaaaa 841 cgca------ ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 -------uGC U|--A----- -----|GUC- Gc-------- cc-c------ ---------- 1021 --(ggg---- ---------- ---------- ---------c a--------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 ---------- ---------- ---------- ---------- ---------- ---------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- ---------- -)-------- ---------- 1561 ---------- ---------- ---------- ---------- ---------- ---------- 1621 ------gggg --C---GGC| --GA|CACC- C-U-C|AAAU |UG--C-GGG |GAC-----| 1681 U-CC------ ---------- ---------- -|C------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ------uaaa gc|------C 1801 AA-------- CC-GA|G-AC C|-------- ---------- ---------- ---------- 1861 ---|AAG-C- GG-C-G---- -C-CC-(GAA A--------- ---------- ---------- 1921 ---------- -)-GGG--CC --C-C-G-U- G-G|----|c cga-g-c-u- (agcag---- 1981 ---------- --------)- cc-c-u--g- g|-------G UA-U|GGU-A GAA-CG-UC- 2041 GG--U-UG-| -ga------- ------|ug- ---------- ---------- --(auaa--- 2101 ---)------ ---------- -ca|-----a u|-------- ---------- ---------- 2161 ---------- ---------- ---------- --GGG|-UGA -|UC-CGCA| GCC|-AAG-- 2221 |CGCC----- ------(--- ---------- ---------- ---------- ---------- 2281 ---------- ----)|-|u| aac---|cgg cagguugccc ccc------- ---------- 2341 (c-cc----- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- -----ggggg 2461 gcgccgucgc cgc|A|G|-- ---------- GGCG|--AA| GGU|--CCA| GA-GACU-U| 2521 -GAC|GGG-G --G-UG|G|G uucggccgcc g--------- -(gg------ ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------c 2701 ggccggGCC- |UAA-GG-UA |AA-GUC|C| -|Gu-----| -----|ccgg gcgu------ 2761 ----(-GAAA ---------- )--------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---------- ---------- 2881 --|----gcg cc--a-c-g- g|-------- --|------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---------- ---------- 3121 ---------- ---------- ---------- ---------- ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ---------- ---------- ---------- ---------- ---------- ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- ---------- 4021 ---------- ---------- ---------- ---------- ---------- ---------- 4081 ---------- ---------- ---------- ---------- ---------- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- ---------- ---------- ---------- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ------agcc ccuaagaaa| -----aC|G- -||gga-gcc ugcggc| // LOCUS Cor.ch.1.2 4557 bp RNA RNA 28-JAN-191 DEFINITION Cordyceps cochlidiicola. ACCESSION No information KEYWORDS No information. SOURCE Cordyceps cochlidiicola. ORGANISM Cordyceps cochlidiicola. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 4557) Corresponding GenBank entry: AB027331 LOCUS AB027331 2958 bp DNA PLN 19-APR-2000 DEFINITION Cordyceps cochlidiicola DNA for 18S ribosomal RNA. ACCESSION AB027331 VERSION AB027331.1 GI:7619929 KEYWORDS . SOURCE Cordyceps cochlidiicola DNA. ORGANISM Cordyceps cochlidiicola Eukaryota; Fungi; Ascomycota; Hypocreales; Clavicipitaceae; Cordyceps. REFERENCE 1 (sites) AUTHORS Nikoh,N. and Fukatsu,T. TITLE Interkingdom host jumping underground: Phylogenetic analysis of entomoparasitic fungi of the genus Cordyceps JOURNAL Mol. Biol. Evol. 17, 629-638 (2000) REFERENCE 2 (bases 1 to 2958) AUTHORS Nikoh,N. TITLE Direct Submission JOURNAL Submitted (17-MAY-1999) to the DDBJ/EMBL/GenBank databases. Naruo Nikoh, NIBH, Insect-Parasitic Symbiotic Microorganisms Research Group; 1-1 Higashi, Tsukuba, Ibaraki 305-8566, Japan (E-mail:nikoh@nibh.go.jp, Tel:81-298-54-6087, Fax:81-298-54-6080) FEATURES Location/Qualifiers source 1..2958 /organism="Cordyceps cochlidiicola" /db_xref="taxon:94215" rRNA 1..2958 /product="18S ribosomal RNA" BASE COUNT 639 a 806 c 946 g 567 t BASE COUNT 78 a 133 c 137 g 45 t 4164 others ORIGIN 1 |caccaccag gggU||a--- -------(-- --aacc---- ---------- -----gcagu 61 ucgcuc---- ---------- --)------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- ---------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 -------|-- ----u|Gccc c---|----- --------uc aa-|AGCA-- ---------- 781 gccgg(gaaa --)cc-ggc- --------(c ggucgggucc uuggccgcga ggccgaagca 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 -------uGC U|--A----- -----|GUC- Gcccc----- ---------- ---------- 1021 --(cc----- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 ---------- ---------- ---------- ---------- ---------- ---------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- ---------- -)-------- ---------- 1561 ---------- ---------- ---------- ---------- ---------- ---------- 1621 ------gggg --C---GGC| --GA|CACC- C-U-C|CAAU |UG--C-GGG |AAA-----| 1681 U-CC------ ---------- ---------- -|C------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ------uaaa gc|------C 1801 GA-------- CU-GG|G-AC C|-------- ---------- ---------- ---------- 1861 ---|AAG-C- GG-G-C---- -G-CC-(GAA Ag-------- ---------- ---------- 1921 ---------- -)-GGC--GU c-C-C-G-U- G-G|----|c c-g-g-g--- (uuaacga-- 1981 ---------- --------)- cc-c-c--g- g|-------G UA-C|GGU-A ACA-CA-CC- 2041 AG--C-CG-| -ga------- ------|ug- ---------- ---------- --(gaa---- 2101 ---)------ ---------- -ca|-----a u|-------- ---------- ---------- 2161 ---------- ---------- ---------- --GGG|-UGA -|UC-CGCA| GCC|-AAG-- 2221 |CGCC----- ------(--- ---------- ---------- ---------- ---------- 2281 ---------- ----)|-|u| ac----|Gcg gcggugc--- ---------- ---------- 2341 (c-aug-gc- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 -gcgccg-cc gc-|A|C|-- ---------- GGCG|--AA| GGU|--CCA| GA-GACU-U| 2521 -GAC|GGG-G --G-UG|G|G ucggg----- ---------- -(cgcgaca- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 --cccGGCC- |UAA-GA-UG |AA-GUC|C| -|Gu-----| c----|cccg -cgc------ 2761 ----(-GAAA ---------- )--------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---------- ---------- 2881 --|----gcg uc--g-u-g- g|-------- --|------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---------- ---------- 3121 ---------- ---------- ---------- ---------- ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ---------- ---------- ---------- ---------- ---------- ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- ---------- 4021 ---------- ---------- ---------- ---------- ---------- ---------- 4081 ---------- ---------- ---------- ---------- ---------- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- ---------- ---------- ---------- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -agcccuaa| -----aC|G- -||gga-gcc ugcggc| // LOCUS Cor.sp.2.1 4557 bp RNA RNA 28-JAN-191 DEFINITION Cordyceps sp. 97009. ACCESSION No information KEYWORDS No information. SOURCE Cordyceps sp. 97009. ORGANISM Cordyceps sp. 97009. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 4557) Corresponding GenBank entry: AB027332 LOCUS AB027332 2277 bp DNA PLN 19-APR-2000 DEFINITION Cordyceps sp. 97009 DNA for 18S ribosomal RNA. ACCESSION AB027332 VERSION AB027332.1 GI:7619930 KEYWORDS . SOURCE Cordyceps sp. 97009 (strain:97009) DNA. ORGANISM Cordyceps sp. 97009 Eukaryota; Fungi; Ascomycota; Hypocreales; Clavicipitaceae; Cordyceps. REFERENCE 1 (sites) AUTHORS Nikoh,N. and Fukatsu,T. TITLE Interkingdom host jumping underground: Phylogenetic analysis of entomoparasitic fungi of the genus Cordyceps JOURNAL Mol. Biol. Evol. 17, 629-638 (2000) REFERENCE 2 (bases 1 to 2277) AUTHORS Nikoh,N. TITLE Direct Submission JOURNAL Submitted (17-MAY-1999) to the DDBJ/EMBL/GenBank databases. Naruo Nikoh, NIBH, Insect-Parasitic Symbiotic Microorganisms Research Group; 1-1 Higashi, Tsukuba, Ibaraki 305-8566, Japan (E-mail:nikoh@nibh.go.jp, Tel:81-298-54-6087, Fax:81-298-54-6080) FEATURES Location/Qualifiers source 1..2277 /organism="Cordyceps sp. 97009" /strain="97009" /db_xref="taxon:94216" rRNA 1..2277 /product="18S ribosomal RNA" BASE COUNT 565 a 540 c 644 g 528 t BASE COUNT 99 a 126 c 136 g 59 t 4137 others ORIGIN 1 |caccaccag gggU||u--- -------(-- --aac-a--- ccuacaugca gcc--gcagu 61 ag-cuc---- ---------- --)------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- ---------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 -------|-- ----u|Gcuc c---|----- --------ga aa-|AGCA-- ---------- 781 -gccu(gaaa --)gg-gu-- --------(c a-guggugug ccugccagcg ccgcgccgcg 841 cuggcgaacc aag------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 -------uGC U|--A----- -----|GUC- Ucc------- ---------- ---------- 1021 --(ucu---- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 ---------- ---------- ---------- ---------- ---------- ---------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- ---------- -)-------- ---------- 1561 ---------- ---------- ---------- ---------- ---------- ---------- 1621 --------gg --A---GGC| --GA|CACC- C-U-C|AAAU |UG--C-GGG |AAAC----| 1681 U-CC------ ---------- ---------- -|U------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- --------aa ag|------C 1801 CA-------- GC-GU|C-AC C|-------- ---------- ---------- ---------- 1861 ---|AAG-C- CG-G-C---- -G-UC-(GAA Aa-------- ---------- ---------- 1921 ---------- -)-GGC--GU c-C-G-G-U- G-G|----|c c-g-g-g-gu (aaug----- 1981 ---------- --------)a cc-u-c--g- g|-------G UA-C|GGU-A ACA-GC-AC- 2041 GC--U-GG-| -a-------- ------|uag cgcug----- ---------- --(ga----- 2101 ---)------ ------cagc gca|-----a u|-------- ---------- ---------- 2161 ---------- ---------- ---------- --GGA|-CAA -|UC-CGCA| GCC|-AAG-- 2221 |CCCC----- ------(--- ---------- ---------- ---------- ---------- 2281 ---------- ----)|-|g| uc----|gcc a--------- ---------- ---------- 2341 (g-c------ ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 --------ug gc-|A|C|-- ---------- GGGG|--AA| GGU|--UCA| GA-GACU-A| 2521 -GAU|GGG-G --G-UG|G|G uagug----- ---------- -(augcccaa cagcgacg-- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 --cacuGCU- |UAA-GA-UA |UA-GUC|C| -|Gg-----| -----|ccgc ggcg------ 2761 ----(-GAAA ---------- )--------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---------- ---------- 2881 --|-----cg ca--g-c-g- g|-------- --|------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---------- ---------- 3121 ---------- ---------- ---------- ---------- ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ---------- ---------- ---------- ---------- ---------- ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- ---------- 4021 ---------- ---------- ---------- ---------- ---------- ---------- 4081 ---------- ---------- ---------- ---------- ---------- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- ---------- ---------- ---------- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---auuggca agcccaaca| -----aC|G- -||gga-gcc ugcggc| // LOCUS Cor.m.1.1 4557 bp RNA RNA 28-JAN-191 DEFINITION Cordyceps militaris. ACCESSION No information KEYWORDS No information. SOURCE Cordyceps militaris. ORGANISM Cordyceps militaris. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 4557) Corresponding GenBank entry: AB027333 LOCUS AB027333 2306 bp DNA PLN 19-APR-2000 DEFINITION Cordyceps militaris DNA for 18S ribosomal RNA. ACCESSION AB027333 VERSION AB027333.1 GI:7619931 KEYWORDS . SOURCE Cordyceps militaris DNA. ORGANISM Cordyceps militaris Eukaryota; Fungi; Ascomycota; Hypocreales; Clavicipitaceae; Cordyceps. REFERENCE 1 (sites) AUTHORS Nikoh,N. and Fukatsu,T. TITLE Interkingdom host jumping underground: Phylogenetic analysis of entomoparasitic fungi of the genus Cordyceps JOURNAL Mol. Biol. Evol. 17, 629-638 (2000) REFERENCE 2 (bases 1 to 2306) AUTHORS Nikoh,N. TITLE Direct Submission JOURNAL Submitted (17-MAY-1999) to the DDBJ/EMBL/GenBank databases. Naruo Nikoh, NIBH, Insect-Parasitic Symbiotic Microorganisms Research Group; 1-1 Higashi, Tsukuba, Ibaraki 305-8566, Japan (E-mail:nikoh@nibh.go.jp, Tel:81-298-54-6087, Fax:81-298-54-6080) FEATURES Location/Qualifiers source 1..2306 /organism="Cordyceps militaris" /db_xref="taxon:73501" rRNA 1..2306 /product="18S ribosomal RNA" BASE COUNT 578 a 540 c 649 g 539 t BASE COUNT 98 a 130 c 139 g 63 t 4127 others ORIGIN 1 |caccaccag gggU||a--- -------(-- --aacc-gcu ucgcgcagcc -----gcagu 61 ag-cuc---- ---------- --)------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- ---------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 -------|-- ----u|Gccc c---|----- --------ag aa-|AGCA-- ---------- 781 -gccc(gaaa --)gg-gu-- --------(c a-gugguguu ccugccagcg cuccggcgcg 841 gcgaacuaau ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 -------uGC U|--A----- -----|GUC- Ucc------- ---------- ---------- 1021 --(ucu---- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 ---------- ---------- ---------- ---------- ---------- ---------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- ---------- -)-------- ---------- 1561 ---------- ---------- ---------- ---------- ---------- ---------- 1621 --------gg --A---GGC| --GA|CACC- C-U-C|AAAU |UG--C-GGG |AAAA----| 1681 U-CC------ ---------- ---------- -|U------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- --------aa ag|------C 1801 CA-------- GU-GU|C-AC C|-------- ---------- ---------- ---------- 1861 ---|AAG-C- CG-G-C---- -G-CC-(GAA Ag-------- ---------- ---------- 1921 ---------- -)-GGC--GU --C-G-G-U- G-G|----|c c-G-g-G--- (Guagcga-- 1981 ---------- --------)- -C-C-U-AG- G|-------G UA-C|GGU-A AAA-GC-AC- 2041 AC--U-GG-| -a-------- ------|u-- ---------- ---------- --(aaugc-- 2101 ---)------ ---------- --a|-----a u|-------- ---------- ---------- 2161 ---------- ---------- ---------- --GGA|-CGA -|UC-CGCA| GCC|-AAG-- 2221 |CCUC----- ------(--- ---------- ---------- ---------- ---------- 2281 ---------- ----)|-|-| ------|guc ---------- ---------- ---------- 2341 (g-ccg-cag ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------g gc-|A|C|-- ---------- GGGG|--AA| GGU|--UCA| GA-GACU-A| 2521 -CAU|GGG-G --G-UG|G|G uagug----- ---------- -(cacugucu gggggcuccg 2581 gcccccgagc gcccgcucac aa-------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 --cacuGCU- |UAA-GA-UA |UA-GUC|C| -|Gg-----| -----|ccgu gcug------ 2761 ----(-GAAA ---------- )--------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---------- ---------- 2881 --|-----ca gc--a-c-g- g|-------- --|------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---------- ---------- 3121 ---------- ---------- ---------- ---------- ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ---------- ---------- ---------- ---------- ---------- ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- ---------- 4021 ---------- ---------- ---------- ---------- ---------- ---------- 4081 ---------- ---------- ---------- ---------- ---------- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- ---------- ---------- ---------- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---gcuggca aacccagaa| -----aC|G- -||gga-gcc ugcggc| // LOCUS Pae.t.1.1 4557 bp RNA RNA 28-JAN-191 DEFINITION Paecilomyces tenuipes. ACCESSION No information KEYWORDS No information. SOURCE Paecilomyces tenuipes. ORGANISM Paecilomyces tenuipes. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 4557) Corresponding GenBank entry: AB027334 LOCUS AB027334 1903 bp DNA PLN 19-APR-2000 DEFINITION Paecilomyces tenuipes DNA for 18S ribosomal RNA. ACCESSION AB027334 VERSION AB027334.1 GI:7619932 KEYWORDS . SOURCE Paecilomyces tenuipes DNA. ORGANISM Paecilomyces tenuipes Eukaryota; Fungi; Ascomycota; anamorphic Ascomycota; Paecilomyces. REFERENCE 1 (sites) AUTHORS Nikoh,N. and Fukatsu,T. TITLE Interkingdom host jumping underground: Phylogenetic analysis of entomoparasitic fungi of the genus Cordyceps JOURNAL Mol. Biol. Evol. 17, 629-638 (2000) REFERENCE 2 (bases 1 to 1903) AUTHORS Nikoh,N. TITLE Direct Submission JOURNAL Submitted (17-MAY-1999) to the DDBJ/EMBL/GenBank databases. Naruo Nikoh, NIBH, Insect-Parasitic Symbiotic Microorganisms Research Group; 1-1 Higashi, Tsukuba, Ibaraki 305-8566, Japan (E-mail:nikoh@nibh.go.jp, Tel:81-298-54-6087, Fax:81-298-54-6080) FEATURES Location/Qualifiers source 1..1903 /organism="Paecilomyces tenuipes" /db_xref="taxon:45847" rRNA 1..1903 /product="18S ribosomal RNA" BASE COUNT 479 a 427 c 539 g 458 t BASE COUNT 86 a 118 c 144 g 60 t 4149 others ORIGIN 1 |caccaccag gggU||a--- -------(-- --aaccgcuu caugcagcc- -----gcagu 61 ag-cuc---- ---------- --)------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- ---------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 -------|-- ----u|Gcuc c---|----- --------ag aa-|AGCC-- ---------- 781 -gccc(gaaa --)gg-gu-- --------(c -ggugguguu ccugucggcg ccucggcgcg 841 acgaaguaac g--------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 -------uGC U|--A----- -----|GUC- UUCC-----c gg-gagc--- ---------- 1021 --(cac---- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 ---------- ---------- ---------- ---------- ---------- ---------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- ---------- -)-------- --g-cu---- 1561 ---------- ---------- ---------- ---------- ---------- ---------- 1621 ----ccccGG --G--GGGC| --GA|CACC- C-U-C|AAAU |UG--C-GGG |AAAC----| 1681 U-CC------ ---------- ---------- -|U------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- --------aa ag|------C 1801 CA-------- GC-GA|C-AC C|-------- ---------- ---------- ---------- 1861 ---|AAG-C- CG-G-C---- -G-CC-(GAA Ag-------- ---------- ---------- 1921 ---------- -)-GGC--GU --C-G-G-U- G-G|----|c cag-g-g--- (caauga--- 1981 ---------- --------)- cc-c-g--g- G|-------G UA-C|GGU-A AAA-GC-GC- 2041 GC--U-GG-| -a-------- ------|ug- ---------- ---------- --(gug---- 2101 ---)------ ---------- -ca|-----a u|-------- ---------- ---------- 2161 ---------- ---------- ---------- --GGA|-CGA -|UC-CGCA| GCC|-AAG-- 2221 |CCUC----- ------(--- ---------- ---------- ---------- ---------- 2281 ---------- ----)|-|-| ------|guc ---------- ---------- ---------- 2341 (g-ccg-cag ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------g gc-|A|C|-- ---------- GGGG|--GA| GGU|--UCA| GA-GACU-U| 2521 -GAU|GGG-G --G-UG|G|G uguggcg--- ---------- -(cg------ ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 cgucacGCC- |UAA-GA-UA |AA-GUC|C| -|Gu-----| -----|cuac gca------- 2761 ----(-GGAA ag-------- )--------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---------- ---------- 2881 --|------u gu--g-u-a- g|-------- --|------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---------- ---------- 3121 ---------- ---------- ---------- ---------- ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ---------- ---------- ---------- ---------- ---------- ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- ---------- 4021 ---------- ---------- ---------- ---------- ---------- ---------- 4081 ---------- ---------- ---------- ---------- ---------- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- ---------- ---------- ---------- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- --------gg gugaccuaa| -----aC|G- -||gga-gcc ugcggc| // LOCUS Cor.b.1.1 4557 bp RNA RNA 28-JAN-191 DEFINITION Cordyceps brongniartii. ACCESSION No information KEYWORDS No information. SOURCE Cordyceps brongniartii. ORGANISM Cordyceps brongniartii. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 4557) Corresponding GenBank entry: AB027335 LOCUS AB027335 2312 bp DNA PLN 19-APR-2000 DEFINITION Beauveria brongniartii DNA for 18S ribosomal RNA, strain:IFO5299. ACCESSION AB027335 VERSION AB027335.1 GI:7619933 KEYWORDS . SOURCE Beauveria brongniartii (strain:IFO5299) DNA. ORGANISM Cordyceps brongniartii Eukaryota; Fungi; Ascomycota; Hypocreales; Clavicipitaceae; Cordyceps. REFERENCE 1 (sites) AUTHORS Nikoh,N. and Fukatsu,T. TITLE Interkingdom host jumping underground: Phylogenetic analysis of entomoparasitic fungi of the genus Cordyceps JOURNAL Mol. Biol. Evol. 17, 629-638 (2000) REFERENCE 2 (bases 1 to 2312) AUTHORS Nikoh,N. TITLE Direct Submission JOURNAL Submitted (17-MAY-1999) to the DDBJ/EMBL/GenBank databases. Naruo Nikoh, NIBH, Insect-Parasitic Symbiotic Microorganisms Research Group; 1-1 Higashi, Tsukuba, Ibaraki 305-8566, Japan (E-mail:nikoh@nibh.go.jp, Tel:81-298-54-6087, Fax:81-298-54-6080) FEATURES Location/Qualifiers source 1..2312 /organism="Cordyceps brongniartii" /strain="IFO5299" /db_xref="taxon:118266" rRNA 1..2312 /product="18S ribosomal RNA" BASE COUNT 578 a 540 c 650 g 544 t BASE COUNT 100 a 126 c 134 g 67 t 4130 others ORIGIN 1 |caccaccag gggU||a--- -------(-- --aaccgcuu caugcagcc- -----gcagu 61 ag-cuc---- ---------- --)------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- ---------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 -------|-- ----u|gcuc c---|----- --------ca aa-|AGCA-- ---------- 781 -gccc(gaaa --)gg-gu-- --------(c a-gugguguu ccuguccgcg cuccggcgcg 841 gcgaacuaag ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 -------uGC U|--A----- -----|GUC- Ucc------- ---------- ---------- 1021 --(ucc---- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 ---------- ---------- ---------- ---------- ---------- ---------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- ---------- -)-------- ---------- 1561 ---------- ---------- ---------- ---------- ---------- ---------- 1621 --------gg --A---GGC| --AA|CACC- C-U-C|AAAU |UG--C-GGG |AAAC----| 1681 U-CC------ ---------- ---------- -|U------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- --------aa ag|------C 1801 CA-------- GU-GU|C-AC C|-------- ---------- ---------- ---------- 1861 ---|AAG-C- CG-G-C---- -G-UC-(GAA Ag-------- ---------- ---------- 1921 ---------- -)-GGC--GC --C-G-G-U- G-G|----|c cgg-g-g-u- (-aacg---- 1981 ---------- --------)- ac-c-u-ag- G|-------G UA-C|GGU-A AAA-GC-AC- 2041 AC--U-GG-| -au------- ------|aa- ---------- ---------- --(ug----- 2101 ---)------ ---------- -ca|-----a u|-------- ---------- ---------- 2161 ---------- ---------- ---------- --GGA|-CAA -|UC-CGCA| GCC|-AAG-- 2221 |CCUC----- ------(--- ---------- ---------- ---------- ---------- 2281 ---------- ----)|-|-| ------|guc ---------- ---------- ---------- 2341 (g-ccg-cag ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------g gc-|A|C|-- ---------- GGGG|--AA| GGU|--UCA| GA-GACU-A| 2521 -AAU|GGG-G --G-UG|G|G uagugu---- ---------- -(ccuggagg auccguccuc 2581 cgagcgcucg cucac----- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 -acacuGCU- |UAA-GA-UA |UA-GUC|C| -|Gg-----| -----|ccgc gcug------ 2761 ----(-GAAA ---------- )--------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---------- ---------- 2881 --|-----ca gc--g-c-g- g|-------- --|------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---------- ---------- 3121 ---------- ---------- ---------- ---------- ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ---------- ---------- ---------- ---------- ---------- ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- ---------- 4021 ---------- ---------- ---------- ---------- ---------- ---------- 4081 ---------- ---------- ---------- ---------- ---------- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- ---------- ---------- ---------- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------g --uuggcaag cccaaguaa| -----aC|G- -||gga-gcc ugcggc| // LOCUS Cor.cc.1.2 4557 bp RNA RNA 28-JAN-191 DEFINITION Cordyceps coccidiicola. ACCESSION No information KEYWORDS No information. SOURCE Cordyceps coccidiicola. ORGANISM Cordyceps coccidiicola. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 4557) Corresponding GenBank entry: AB031195 LOCUS AB031195 3039 bp DNA PLN 19-APR-2000 DEFINITION Cordyceps coccidiicola gene for 18S rRNA, partial sequence. ACCESSION AB031195 VERSION AB031195.1 GI:7619985 KEYWORDS 18S rRNA; 18S ribosomal RNA. SOURCE Cordyceps coccidiicola DNA. ORGANISM Cordyceps coccidiicola Eukaryota; Fungi; Ascomycota; Hypocreales; Clavicipitaceae; Cordyceps. REFERENCE 1 (sites) AUTHORS Nikoh,N. and Fukatsu,T. TITLE Interkingdom host jumping underground: Phylogenetic analysis of entomoparasitic fungi of the genus Cordyceps JOURNAL Mol. Biol. Evol. 17, 629-638 (2000) REFERENCE 2 (bases 1 to 3039) AUTHORS Nikoh,N. and Fukatsu,T. TITLE Direct Submission JOURNAL Submitted (17-AUG-1999) to the DDBJ/EMBL/GenBank databases. Naruo Nikoh, NIBH, Insect-Parasitic Symbiotic Microorganisms Research Group; 1-1 Higashi, Tsukuba, Ibaraki 305-8566, Japan (E-mail:nikoh@nibh.go.jp, Tel:81-298-54-6087, Fax:81-298-54-6080) FEATURES Location/Qualifiers source 1..3039 /organism="Cordyceps coccidiicola" /db_xref="taxon:102624" rRNA <1..>3039 /product="18S ribosomal RNA" BASE COUNT 649 a 848 c 993 g 549 t BASE COUNT 79 a 137 c 150 g 40 t 4151 others ORIGIN 1 |caccaccag gggU||a--- -------(-- --aac-a--- -------c-- -----gcagu 61 cg-cuc---- ---------- --)------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- ---------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 -------|-- ----u|Gccc c---|----- --------ca ag-|AGCA-- ---------- 781 gccgg(gaaa --)cc-gg-- --------(c cggucggguc cuuggccgcg aggccgaagc 841 a--------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 -------cGC U|--A----- -----|GUC- Gcccc----- ---------- ---------- 1021 --(cc----- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 ---------- ---------- ---------- ---------- ---------- ---------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- ---------- -)-------- ---------- 1561 ---------- ---------- ---------- ---------- ---------- ---------- 1621 ------gggg --C---GGC| --GA|CACC- C-U-C|CAAU |UG--C-GGG |GAC-----| 1681 U-CC------ ---------- ---------- -|C------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ------uaaa gc|------C 1801 GA-------- CC-GG|G-AC C|-------- ---------- ---------- ---------- 1861 ---|AAG-C- GG-G-C---- -G-CC-(GAG Ag-------- ---------- ---------- 1921 ---------- -)-GGC--GU c-C-C-G-U- G-G|----|c c-g-g-g-u- (uaacg---- 1981 ---------- --------)- ac-c-c-cg- g|-------G UA-C|GGU-A ACA-CG-CC- 2041 GG--U-CG-| -ga------- ------|ug- ---------- ---------- --(gaaga-- 2101 ---)------ ---------- -ca|-----a u|-------- ---------- ---------- 2161 ---------- ---------- ---------- --GGG|-UGA -|UC-CGCA| GCC|-AAG-- 2221 |CGCC----- ------(--- ---------- ---------- ---------- ---------- 2281 ---------- ----)|-|u| acc---|cgg c--------- ---------- ---------- 2341 (g-ggu-gag cccacgggcg accc------ ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ------g-cc gc-|A|G|-- ---------- GGCG|--AA| GGU|--CCA| GA-GACU-U| 2521 -GAC|GGG-G --G-UG|G|G ucgggcg--- ---------- -(cgcg---- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 cgcccGGCC- |UAA-GA-UG |AA-GUC|C| -|Gu-----| -----|cugc gcgc------ 2761 ----(-GAGA ---------- )--------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---------- ---------- 2881 --|----gcg cg--a-c-a- g|-------- --|------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---------- ---------- 3121 ---------- ---------- ---------- ---------- ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ---------- ---------- ---------- ---------- ---------- ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- ---------- 4021 ---------- ---------- ---------- ---------- ---------- ---------- 4081 ---------- ---------- ---------- ---------- ---------- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- ---------- ---------- ---------- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ------agcc cugaagaaa| -----aC|G- -||gga-gcc ugcggc| // LOCUS Geo.p.1.1 4557 bp RNA RNA 17-NOV-1999 DEFINITION Geomyces pannorum var. pannorum.. ACCESSION No information KEYWORDS No information. SOURCE Geomyces pannorum var. pannorum. ORGANISM Geomyces pannorum var. pannorum. REFERENCE 1 (bases 1 to 2828) AUTHORS Sugiyama,M., Ohara,A. and Mikawa,T. TITLE Molecular phylogeny of onygenalean fungi based on small subunit ribosomal DNA (SSU rDNA) sequences JOURNAL Mycoscience 40, 251-258 (1999) STANDARD No information COMMENTS Sequence information (bases 1 to 4557) Corresponding GenBank entry: AB015785 LOCUS AB015785 2050 bp DNA PLN 17-NOV-1999 DEFINITION Geomyces pannorum 18S rRNA gene, isolate CBS 108.14, partial sequence. ACCESSION AB015785 NID g6440681 VERSION AB015785.1 GI:6440681 KEYWORDS . SOURCE Geomyces pannorum var. pannorum (sub_species:pannorum, isolate:CBS 108.14) DNA. ORGANISM Geomyces pannorum var. pannorum Eukaryota; Fungi; Ascomycota; Plectomycetes; Onygenales; Onygenaceae; anamorphic Onygenaceae; Geomyces. REFERENCE 1 (sites) AUTHORS Sugiyama,M., Ohara,A. and Mikawa,T. TITLE Molecular phylogeny of onygenalean fungi based on small subunit ribosomal DNA (SSU rDNA) sequences JOURNAL Mycoscience 40, 251-258 (1999) REFERENCE 2 (bases 1 to 2050) AUTHORS Sugiyama,M. TITLE Direct Submission JOURNAL Submitted (25-JUN-1998) to the DDBJ/EMBL/GenBank databases. Masato Sugiyama, Mitsubishi Chemical Co. Yokohama Research Center, Biochemicals Laboratory; 1000, Kamoshida-cho, Aoba-ku, Yokohama, Kanagawa 227-8502, Japan (E-mail:4200779@cc.m-kagaku.co.jp, Tel:+81-45-963-3474, Fax:+81-45-963-3992) FEATURES Location/Qualifiers source 1..2050 /organism="Geomyces pannorum var. pannorum" /isolate="CBS 108.14" /sub_species="pannorum" /db_xref="taxon:79859" rRNA join(<1..1085,1452..>2050) /note="small subunit rRNA" /product="18S ribosomal RNA" intron 1086..1451 BASE COUNT 532 a 449 c 558 g 511 t BASE COUNT 114 a 110 c 119 g 77 t 4137 others ORIGIN 1 |caccaccag gagU||a--- -------(-- --aac-uuag u-uuc-g-u- c----gcagc 61 aaacuc---- ---------- --)------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- ---------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 -------|-- ----u|Gcuc c---|----- --------ag aa-|AGC--- ---------- 781 agccc(gaaa --)gg-gu-- ---------- -----uagug ---------- ------gugu 841 cccaggccuc ---gggccga au--uaaau- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------GC U|--A----- -----|GUC- UG-------- CC-------- ---------- 1021 --(-ac---- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 ---------- ---------- ---------- ---------- ---------- ---------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- ---------- -)-------- ---------- 1561 ---------- ---------- ---------- ---------- ---------- ---------- 1621 --------GG --C--AGGC| --GA|CACC- C-U-C|AAAC |UG--C-GGG |GAAC----| 1681 U-CC------ ---------- ---------- -|u------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- --------AA AG|------c 1801 uu-------c UA-GG|U-AC C|-------- ---------- ---------- ---------- 1861 ---|AAG-C- CG-G-C-g-- -U-GC-(GAA A--------- ---------- ---------- 1921 ---------- -)-GCU--GC --C-G-G-C- G-G|----|C C-A-G-G-G- (uaauug--- 1981 ---------- --------)- CC-U-C--G- G|-------G UA-C|CGc-C AAA-AC-CC- 2041 UAG-A-AG-| -augc----- ---------- ---------- ---------- ----u-a--- 2101 ---)------ ---------- -ca|-----a u|-------- ---------- ---------- 2161 ---------- ---------- ---------- --GGA|-CAA -|UC-CGCA| UUC|-AAG-- 2221 |CCCC----- ------(--- ---------- ---------- ---------- ---------- 2281 ---------- ----)|-|u| aa----|ggg acc------- ---------- ---------- 2341 (a-c------ ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- -------|-- 2461 -----gg-uc cu-|A|C|-- ---------- GGGG|--AA| GGU|--UCA| GA-GACU-U| 2521 -GAU|GGG-G --G-UG|G|G UUugag---- ---------- -(aaua---- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------) ---------- 2701 -cucaGGCU- |UAA-GG-UA |AA-GUC|C| -|Gg-----| -----|ccgc ugga------ 2761 ----(-GAAA ---------- )--------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---------- ---------- 2881 --|----ucc au--g-c-g- g|-------- --|--auugg u--aaa--ua aaacggga-g 2941 -cugcggcuu aauuugacuc aaca------ ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---------- ---------- 3121 ---------- ---------- ---------- ---------- ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ---------- ---------- ---------- ---------- ---------- ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- ---------- 4021 ---------- ---------- ---------- ---------- ---------- ---------- 4081 ---------- ---------- ---------- ---------- ---------- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- ---------- ---------- ---------- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------| ---------- ---------| ------C|G- -||gga-aac ucacca| // LOCUS Geo.a.1.1 4557 bp RNA RNA 09-OCT-1998 DEFINITION Geosmithia argillacea. str. IAM14726. ACCESSION No information KEYWORDS No information. SOURCE Geosmithia argillacea. str. IAM14726. ORGANISM Geosmithia argillacea. REFERENCE 1 (bases 1 to 2828) AUTHORS Ogawa,H., Saikawa,M. and Sugiyama,J. TITLE Integrated analysis of evolutionary convergence in the penicillus-like structure based on the comparison of the mode of conidium ontogeny and the 18S ribosomal DNA sequence JOURNAL Unpublished (1998) STANDARD No information COMMENTS Sequence information (bases 1 to 4557) Corresponding GenBank entry: AB012951 LOCUS AB012951 2556 bp DNA PLN 09-OCT-1998 DEFINITION Geosmithia argillacea gene for 18S rRNA, partial sequence. ACCESSION AB012951 NID g3721659 KEYWORDS 18S ribosomal RNA; 18S rRNA. SOURCE Geosmithia argillacea (strain:IAM14726) DNA. ORGANISM Geosmithia argillacea Eukaryota; Fungi; Ascomycota; Euascomycetes; Plectomycetes; Eurotiales; Trichocomaceae; mitosporic Trichocomaceae; Geosmithia. REFERENCE 1 (sites) AUTHORS Ogawa,H., Saikawa,M. and Sugiyama,J. TITLE Integrated analysis of evolutionary convergence in the penicillus-like structure based on the comparison of the mode of conidium ontogeny and the 18S ribosomal DNA sequence JOURNAL Unpublished (1998) REFERENCE 2 (bases 1 to 2556) AUTHORS Ogawa,H. and Sugiyama,J. TITLE Direct Submission JOURNAL Submitted (14-APR-1998) to the DDBJ/EMBL/GenBank databases. Hiroyuki Ogawa, National Institute of Genetics, Center for Information Biology; Yata 1111, Mishima, Shizuoka 411-8540, Japan (E-mail:KFR00124@nifty.ne.jp, Tel:81-559-81-6895, Fax:81-559-81-6896) FEATURES Location/Qualifiers source 1..2556 /organism="Geosmithia argillacea" /strain="IAM14726" /db_xref="taxon:69808" exon <1..1178 rRNA join(<1..1178,1510..2116) /product="18S rRNA" intron 1179..1509 exon 1510..2116 intron 2117..2556 BASE COUNT 632 a 610 c 735 g 578 t 1 others BASE COUNT 97 a 130 c 139 g 67 t 4124 others ORIGIN 1 |caccacaag gcgU||a--- -------(-- --aaccauug c-uac-a-gc c----gcagc 61 a-acuc---- ---------- --)------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- ---------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 -------|-- ----u|Gcgc c---|----- --------ga ac-|AGC--- ---------- 781 agccc(gaaa --)gg-gug- ---------- ---------- ---------- ----augugg 841 u---gcccuc u------a-a gcgguaaau- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------GC U|--A----- -----|GUC- UG-------- CC-C------ ---------- 1021 --(-cc---- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 ---------- ---------- ---------- ---------- ---------- ---------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- ---------- -)-------- ---------- 1561 ---------- ---------- ---------- ---------- ---------- ---------- 1621 -------GGG --C--AGGC| --GA|CACG- C-U-C|AAAU |UG--C-GGG |AAAC----| 1681 C-CC------ ---------- ---------- -|U------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- --------AA AG|------C 1801 UC-------C CA-GC-U-AC C|-------- ---------- ---------- ---------- 1861 ---|AAG-C- CG-C-C-g-- -G-UC-(GAA A--------- ---------- ---------- 1921 ---------- ---GAC--GG --C-G-G-U- G-G|----|C C-A-G-G-U- (uaauu---- 1981 ---------- --------)- GC-C-U-CG- G|-------G UA-C|GGU-C ACA-AC-GC- 2041 UGG-G-AG-| -augcau--- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- --GGG|-CGA -|UC-CGCA| GCC|-AAG-- 2221 |CCCC----- ------(--- ---------- ---------- ---------- ---------- 2281 ---------- ----)|-|U| AC----|guc c--------- ---------- ---------- 2341 (--ccc-cgg ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- -------|-- 2461 --------gg au-|A|C|-- ---------- GGGG|--AA| GGU|--UCA| GA-GACU-A| 2521 -GAU|GGG-C --G-UG|G|G UUGaccggga gggggg---- -(cgug---- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- --uccccccc 2701 cgggCGGCU- |UAA-GA-UA |UA-GUC|C| -|gG-----| c----|accg gga------- 2761 ----(-GAGA ---------- )--------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---------- ---------- 2881 --|------u cc--c-g-g- u|-------- --|ggucagg uccaccugua acacggga-g 2941 ccugcggcuu aauuugacuc aaca------ ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---------- ---------- 3121 ---------- ---------- ---------- ---------- ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ---------- ---------- ---------- ---------- ---------- ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- ---------- 4021 ---|------ ---------- ---------- ---------- ---------- ---------- 4081 ---------- ---------- ---------- ---------- ---------- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- ---------- ---------- ---------- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------| -----Cg|G- -||gga-aac uc----| // LOCUS Geo.a.2.1 4557 bp RNA RNA 10-NOV-1998 DEFINITION Geosmithia argillacea. str. IFO 31128. ACCESSION No information KEYWORDS No information. SOURCE Geosmithia argillacea. str. IFO 31128. ORGANISM Geosmithia argillacea. REFERENCE 1 (bases 1 to 2828) AUTHORS Ogawa,H., Sugiyama,J. and Endo,M. TITLE Group I introns within 18S rDNA JOURNAL Published Only in DataBase (1998) In press STANDARD No information COMMENTS Sequence information (bases 1 to 4557) Corresponding GenBank entry: AB013734 LOCUS AB013734 381 bp DNA PLN 10-NOV-1998 DEFINITION Geosmithia argillacea gene for 16S-like rRNA, group I intron. ACCESSION AB013734 NID g3868816 KEYWORDS 16S-like ribosomal RNA. SOURCE Geosmithia argillacea (strain:IFO 31128) DNA. ORGANISM Geosmithia argillacea Eukaryota; Fungi; Ascomycota; Euascomycetes; Plectomycetes; Eurotiales; Trichocomaceae; mitosporic Trichocomaceae; Geosmithia. REFERENCE 1 (bases 1 to 381) AUTHORS Ogawa,H., Sugiyama,J. and Endo,M. TITLE Group I introns within 18S rDNA JOURNAL Published Only in DataBase (1998) In press REFERENCE 2 (bases 1 to 381) AUTHORS Ogawa,H., Sugiyama,J. and Endo,M. TITLE Direct Submission JOURNAL Submitted (08-MAY-1998) to the DDBJ/EMBL/GenBank databases. Hiroyuki Ogawa, National Institute of Genetics, Center for Information Biology; Yata 1111, Mishima, Shizuoka 411-8540, Japan (E-mail:hiogawa@lab.nig.ac.jp, Tel:81-559-81-6895, Fax:81-559-81-6896) FEATURES Location/Qualifiers source 1..381 /organism="Geosmithia argillacea" /strain="IFO 31128" /db_xref="taxon:69808" intron 1..381 /note="Group I intron inserted at position 1512 of 16S-like rRNA gene" BASE COUNT 83 a 115 c 125 g 58 t BASE COUNT 83 a 115 c 125 g 58 t 4176 others ORIGIN 1 |~~~~~~~~~ ~~~~||a--- -------(-- --aaccauug c-uac-a-gc c----gcagc 61 a-acuc---- ---------- --)------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- ---------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 -------|-- ----u|gcgc cg--|----- ---------a ac-|AGC--- ---------- 781 agccc(gaaa --)gg-gug- ---------- ---------- -------aug ug-------- 841 --gugcccuc u------a-a gcgguaaau- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------GC U|--A----- -----|GUC- UG-------- CC-C------ ---------- 1021 --(cc----- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 ---------- ---------- ---------- ---------- ---------- ---------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- ---------- -)-------- ---------- 1561 ---------- ---------- ---------- ---------- ---------- ---------- 1621 -------GGG --C--AGGC| --GA|CACG- C-U-C|AAAU |UG--C-GGG |AAAC----| 1681 C-CC------ ---------- ---------- -|U------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- --------AA AG|------C 1801 UC-------C CA-GC|U-AC C|-------- ---------- ---------- ---------- 1861 ---|AAG-C- CG-C-C-G-- -G-UC-(GAA A--------- ---------- ---------- 1921 ---------- -)-GAC--GG --C-G-G-U- G-G|----|C C-A-G-G-U- (uaauu---- 1981 ---------- --------)- GC-C-U-CG- G|-------G UA-C|GGU-C ACA-AC-GC- 2041 UGG-G-AG-| -augcau--- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- --GGG|-CGA -|UC-CGCA| GCC|-AAG-- 2221 |CCCC----- ------(--- ---------- ---------- ---------- ---------- 2281 ---------- ----)|-|U| AC-g--|-uc cccccgg--- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 --------gg au-|A|C|-- ---------- GGGG|--AA| GGU|--UCA| GA-GACU-A| 2521 -GAU|GGG-C --G-UG|G|G UUgaccggga ggggg----- -(gcgug--- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- --uccccccc 2701 cgggcgGCU- |UAA-GA-UA |UA-GUC|C| -|gg-----| c----|accg gga------- 2761 ----(-GAGA ---------- )--------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---------- ---------- 2881 --|------u cc--c-g-g- u|-------- --|ggucagg uccaccugua ac-------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---------- ---------- 3121 ---------- ---------- ---------- ---------- ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ---------- ---------- ---------- ---------- ---------- ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- ---------- 4021 ---|------ ---------- ---------- ---------- ---------- ---------- 4081 ---------- ---------- ---------- ---------- ---------- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- ---------- ---------- ---------- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- -----AC|G- -||~~~-~~~ ~~~~~~| // LOCUS Fus.sp.1.1 4557 bp RNA RNA 28-JAN-191 DEFINITION Fusarium solani f. sp. phaseoli. ACCESSION No information KEYWORDS No information. SOURCE Fusarium solani f. sp. phaseoli. ORGANISM Fusarium solani f. sp. phaseoli. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 4557) Corresponding GenBank entry: AF150481 LOCUS AF150481 1457 bp DNA PLN 26-APR-2000 DEFINITION Fusarium solani f. sp. phaseoli strain T1 small subunit ribosomal RNA gene, partial sequence. ACCESSION AF150481 VERSION AF150481.1 GI:7648653 KEYWORDS . SOURCE Fusarium solani f. sp. phaseoli. ORGANISM Fusarium solani f. sp. phaseoli Eukaryota; Fungi; Ascomycota; anamorphic Ascomycota; Fusarium. REFERENCE 1 (bases 1 to 1457) AUTHORS Suga,H., Oyabu,K., Ito,M., Kageyama,K. and Hyakumachi,M. TITLE Detection of intron-like sequence in small subunit rDNA 3' region of Fusarium solani JOURNAL Mycol. Res. (2000) In press REFERENCE 2 (bases 1 to 1457) AUTHORS Suga,H., Hyakumachi,M. and Kageyama,K. TITLE Direct Submission JOURNAL Submitted (12-MAY-1999) Molecular Genetics Research Center, Gifu University, Gifu 501-1112, Japan FEATURES Location/Qualifiers source 1..1457 /organism="Fusarium solani f. sp. phaseoli" /strain="T1" /db_xref="taxon:120645" /note="forma specialis: phaseoli" rRNA join(<1..15,425..685,1173..>1457) /product="small subunit ribosomal RNA" misc_RNA 16..424 /note="intron-like sequence" misc_RNA 686..1172 /note="intron-like sequence" BASE COUNT 338 a 388 c 424 g 307 t BASE COUNT 110 a 120 c 124 g 80 t 4123 others ORIGIN 1 |caccaccag gggU||a--- -------(-- --aac----- -----uacaa cg-------- 61 ---------- ---------- --)------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- ---------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 -------|-- -----|Guuu cuc-|----- ---------g aa-|AGCC-- ---------- 781 -gcag(uuaa cu)cu-gc-- --------(u ccuaaaagcc gcucuaacga guugauggug 841 uucccuggcu caggccuaaa cuaau----- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 -------gGC U|--A----- -----|GUC- Ucc------- ---------- ---------- 1021 --(uc----- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 ---------- ---------- ---------- ---------- ---------- ---------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- ---------- -)-------- ---------- 1561 ---------- ---------- ---------- ---------- ---------- ---------- 1621 ---------G --G--AGGC| --GA|CAUC- C-U-C|AAAC |UG--C-GGG |AAAC----| 1681 U-CC------ ---------- ---------- -|U------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- --------AA AG|------C 1801 UC-------- AC-AC|U-AC C|-------- ---------- ---------- ---------- 1861 ---|AAG-C- AG-G-C---- -C-UC-(GAA Aga------- ---------- ---------- 1921 ---------- -)-GAG--cu --c-u-G-U- G-G|----|c c-G-G-G--- (Guaacga-- 1981 ---------- --------)- -C-C-U-AG- G|-------G UA-C|GGU-A AAA-AC-GU- 2041 GU--G-AG-| -augcuacag u--------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- -|-------- ---------- ---------- 2161 ---------- ---------- ---------- --GGA|-CGA -|UC-CGCA| GCC|-AAG-- 2221 |CCCC----- ------(--- ---------- ---------- ---------- ---------- 2281 ---------- ----)|-|u| AC----|gug c--------- ---------- ---------- 2341 (g-cca---- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- -------|-- 2461 --------gc au-|A|C|-- ---------- GGGG|--AA| GGU|--UCA| GA-GACU-U| 2521 -GAC|GGG-G --G-UG|G|G ugggcu---- ---------- -(aca----- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 -ggccUGCC- |UAA-GA-UA |AA-GUC|C| -|gg-----| -----|cccc gcgu------ 2761 ----(-GAAA ---------- )--------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---------- ---------- 2881 --|-----gc gcu-g-g-g- g|-------- --|guuacaa cugcuucugc acuauucgaa 2941 auacugcauc ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---------- ---------- 3121 ---------- ---------- ---------- ---------- ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ---------- ---------- ---------- ---------- ---------- ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- ---------- 4021 ---------- ---------- ---------- ---------- ---------- ---------- 4081 ---------- ---------- ---------- ---------- ---------- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- ---------- ---------- ---------- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---ga-ggc- cccaguaaa| -----aC|G- -||gga-gcc ugcggc| // LOCUS Fus.sp.2.1 4557 bp RNA RNA 28-JAN-191 DEFINITION Fusarium solani f. sp. phaseoli. ACCESSION No information KEYWORDS No information. SOURCE Fusarium solani f. sp. phaseoli. ORGANISM Fusarium solani f. sp. phaseoli. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 4557) Corresponding GenBank entry: AF150482 LOCUS AF150482 1025 bp DNA PLN 26-APR-2000 DEFINITION Fusarium solani f. sp. phaseoli strain S3 small subunit ribosomal RNA gene, partial sequence. ACCESSION AF150482 VERSION AF150482.1 GI:7648654 KEYWORDS . SOURCE Fusarium solani f. sp. phaseoli. ORGANISM Fusarium solani f. sp. phaseoli Eukaryota; Fungi; Ascomycota; anamorphic Ascomycota; Fusarium. REFERENCE 1 (bases 1 to 1025) AUTHORS Suga,H., Oyabu,K., Ito,M., Kageyama,K. and Hyakumachi,M. TITLE Detection of intron-like sequence in small subunit rDNA 3' region of Fusarium solani JOURNAL Mycol. Res. (2000) In press REFERENCE 2 (bases 1 to 1025) AUTHORS Suga,H., Hyakumachi,M. and Kageyama,K. TITLE Direct Submission JOURNAL Submitted (12-MAY-1999) Molecular Genetics Research Center, Gifu University, Gifu 501-1112, Japan FEATURES Location/Qualifiers source 1..1025 /organism="Fusarium solani f. sp. phaseoli" /strain="S3" /db_xref="taxon:120645" /note="forma specialis: phaseoli" rRNA join(<1..15,425..>1025) /product="small subunit ribosomal RNA" misc_RNA 16..424 /note="intron-like sequence" BASE COUNT 250 a 258 c 286 g 231 t BASE COUNT 110 a 120 c 124 g 80 t 4123 others ORIGIN 1 |caccaccag gggU||a--- -------(-- --aac----- -----uacaa cg-------- 61 ---------- ---------- --)------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- ---------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 -------|-- -----|Guuu cuc-|----- ---------g aa-|AGCC-- ---------- 781 -gcag(uuaa cu)cu-gc-- --------(u ccuaaaagcc gcucuaacga guugauggug 841 uucccuggcu caggccuaaa cuaau----- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 -------gGC U|--A----- -----|GUC- Ucc------- ---------- ---------- 1021 --(uc----- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 ---------- ---------- ---------- ---------- ---------- ---------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- ---------- -)-------- ---------- 1561 ---------- ---------- ---------- ---------- ---------- ---------- 1621 ---------G --G--AGGC| --GA|CAUC- C-U-C|AAAC |UG--C-GGG |AAAC----| 1681 U-CC------ ---------- ---------- -|U------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- --------AA AG|------C 1801 UC-------- AC-AC|U-AC C|-------- ---------- ---------- ---------- 1861 ---|AAG-C- AG-G-C---- -C-UC-(GAA Aga------- ---------- ---------- 1921 ---------- -)-GAG--cu --c-u-G-U- G-G|----|C C-G-G-G--- (Guaacga-- 1981 ---------- --------)- -C-C-U-AG- G|-------G UA-C|GGU-A AAA-AC-GU- 2041 GU--G-AG-| -augcuacag u--------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- -|-------- ---------- ---------- 2161 ---------- ---------- ---------- --GGA|-CGA -|UC-CGCA| GCC|-AAG-- 2221 |CCCC----- ------(--- ---------- ---------- ---------- ---------- 2281 ---------- ----)|-|u| AC----|gug c--------- ---------- ---------- 2341 (g-cca---- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- -------|-- 2461 --------gc au-|A|C|-- ---------- GGGG|--AA| GGU|--UCA| GA-GACU-U| 2521 -GAC|GGG-G --G-UG|G|G ugggcu---- ---------- -(aca----- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 -ggccUGCC- |UAA-GA-UA |AA-GUC|C| -|gg-----| -----|cccc gcgu------ 2761 ----(-GAAA ---------- )--------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---------- ---------- 2881 --|-----gc gcu-g-g-g- g|-------- --|guuacaa cugcuucugc acuauucgaa 2941 auacugcauc ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---------- ---------- 3121 ---------- ---------- ---------- ---------- ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ---------- ---------- ---------- ---------- ---------- ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- ---------- 4021 ---------- ---------- ---------- ---------- ---------- ---------- 4081 ---------- ---------- ---------- ---------- ---------- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- ---------- ---------- ---------- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---ga-ggc- cccaguaaa| -----aC|G- -||gga-gcc ugcggc| // LOCUS Fus.f.1.1 4557 bp RNA RNA 28-JAN-191 DEFINITION Fusarium solani f. piperis. ACCESSION No information KEYWORDS No information. SOURCE Fusarium solani f. piperis. ORGANISM Fusarium solani f. piperis. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 4557) Corresponding GenBank entry: AF150487 LOCUS AF150487 1038 bp DNA PLN 26-APR-2000 DEFINITION Fusarium solani f. piperis strain MAFF236572 small subunit ribosomal RNA gene, partial sequence. ACCESSION AF150487 VERSION AF150487.1 GI:7648659 KEYWORDS . SOURCE Fusarium solani f. piperis. ORGANISM Fusarium solani f. piperis Eukaryota; Fungi; Ascomycota; anamorphic Ascomycota; Fusarium. REFERENCE 1 (bases 1 to 1038) AUTHORS Suga,H., Oyabu,K., Ito,M., Kageyama,K. and Hyakumachi,M. TITLE Detection of intron-like sequence in small subunit rDNA 3' region of Fusarium solani JOURNAL Mycol. Res. (2000) In press REFERENCE 2 (bases 1 to 1038) AUTHORS Suga,H., Hyakumachi,M. and Kageyama,K. TITLE Direct Submission JOURNAL Submitted (12-MAY-1999) Molecular Genetics Research Center, Gifu University, Gifu 501-1112, Japan FEATURES Location/Qualifiers source 1..1038 /organism="Fusarium solani f. piperis" /strain="MAFF236572" /db_xref="taxon:89880" /note="forma: piperis" rRNA join(<1..15,438..>1038) /product="small subunit ribosomal RNA" misc_RNA 16..437 /note="intron-like sequence" BASE COUNT 245 a 270 c 295 g 228 t BASE COUNT 105 a 133 c 133 g 76 t 4110 others ORIGIN 1 |caccaccag gggU||a--- -------(-- --aacc-gcc uacgguuucu cgaagccgca 61 guuaacuc-- ---------- --)------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- ---------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 -------|-- ----u|Gcuc ca--|----- ---------g aa-|AGCC-- ---------- 781 -gccc(gaaa --)gg-gu-- --------(c agugguguuc cuuggccccc ccuccccggg 841 gggccugaac uaau------ ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 -------gGC U|--A----- -----|GUC- Ucu------- ---------- ---------- 1021 --(cc----- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 ---------- ---------- ---------- ---------- ---------- ---------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- ---------- -)-------- ---------- 1561 ---------- ---------- ---------- ---------- ---------- ---------- 1621 ---------G --G--AGGC| --GA|CAUC- C-U-C|AAAU |UG--C-GGG |AAAC----| 1681 U-CC------ ---------- ---------- -|U------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- --------AA AG|------C 1801 UC-------- AC-AC|U-AC C|-------- ---------- ---------- ---------- 1861 ---|AAG-C- AG-C-C---- -C-CC-(GAA Ag-------- ---------- ---------- 1921 ---------- -)-GGA--GG --C-U-G-U- G-G|----|C C-G-G-G--- (Guaauga-- 1981 ---------- --------)- -C-C-U-AG- G|-------G UA-C|GGU-A AAA-AC-Gu- 2041 GCU-G-AG-| -auacagu-- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- --GGA|-CGA -|UC-CGCA| GCC|-AAG-- 2221 |CCCC----- ------(--- ---------- ---------- ---------- ---------- 2281 ---------- ----)|-|u| AC----|gug c--------- ---------- ---------- 2341 (g-cca---- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- -------|-- 2461 --------gc au-|A|C|-- ---------- GGGG|--AA| GGU|--CCA| GA-GACU-U| 2521 -GAC|GGG-G --G-UG|G|G ugggccug-- ---------- -(cgcuc--- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------c 2701 aggccUGCC- |UAA-GA-UA |AA-GUC|C| -|gg-----| -----|cccu gcgc------ 2761 ----(-GAAA ---------- )--------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---------- ---------- 2881 --|----gcg ca--g-c-g- g|-------- --|guaaaaa cugcuucugc aauauuuuuc 2941 gauacugcaa aggccccu-- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---------- ---------- 3121 ---------- ---------- ---------- ---------- ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ---------- ---------- ---------- ---------- ---------- ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- ---------- 4021 ---------- ---------- ---------- ---------- ---------- ---------- 4081 ---------- ---------- ---------- ---------- ---------- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- ---------- ---------- ---------- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -----agaa| -----aC|G- -||gga-gcc ugcggc| // LOCUS Pae.v.1.1 4557 bp RNA RNA 14-FEB-1996 DEFINITION Paecilomyces variotii.. ACCESSION No information KEYWORDS No information. SOURCE Paecilomyces variotii. ORGANISM Paecilomyces variotii. REFERENCE 1 (bases 1 to 2828) AUTHORS Okeke,C.N., Zakikhani,S. and Kappe,R. TITLE Bainier contains a group I intron The gene coding for small ribosomal subunit RNA in one strain (CBS339.51) of the ascomycete Paecilomyces variotii JOURNAL Unpublished STANDARD No information COMMENTS Sequence information (bases 1 to 4557) Corresponding GenBank entry: Z69593 LOCUS PVSS18SRR 365 bp DNA PLN 22-OCT-1998 DEFINITION Paecilomyces variotii small subunit 18S rRNA gene. ACCESSION Z69593 NID g1435176 VERSION Z69593.1 GI:1435176 KEYWORDS 18S ribosomal RNA; 18S rRNA; small subunit. SOURCE Paecilomyces variotii. ORGANISM Paecilomyces variotii Eukaryota; Fungi; Ascomycota; Euascomycetes; Plectomycetes; Eurotiales; Trichocomaceae; mitosporic Trichocomaceae; Paecilomyces. REFERENCE 1 (bases 1 to 365) AUTHORS Okeke,C.N., Zakikhani,S. and Kappe,R. TITLE The gene coding for small ribosomal subunit RNA in one strain (CBS339.51) of the ascomycete Paecilomyces variotii Bainier contains a group I intron JOURNAL Unpublished REFERENCE 2 (bases 1 to 365) AUTHORS Okeke,C.N. TITLE Direct Submission JOURNAL Submitted (09-FEB-1996) Charles N Okeke, Hygiene & Med. Microbiology, University of, Heidelberg, Hygiene Institute, Im Neuenheimer Feld 324, Heidelberg, D-69120, Germany REMARK Revised by author 17-JUL-96 COMMENT On Jul 18, 1996 this sequence version replaced gi:1197374. FEATURES Location/Qualifiers source 1..365 /organism="Paecilomyces variotii" /strain="CBS339.51" /db_xref="taxon:45996" gene 1..365 /gene="18S rRNA" intron 1..365 /gene="18S rRNA" /standard_name="small ribosomal subunit (18S rRNA)" BASE COUNT 89 a 107 c 111 g 58 t BASE COUNT 90 a 108 c 114 g 58 t 4187 others ORIGIN 1 |~~~~~~~~~ ~~~~||a--- -------(-- --aaccauug caugcga-gc c----gcagc 61 a-acuc---- ---------- --)------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- ---------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 -------|-- ----u|gcgc cg--|----- ---------a ac-|AGC--- ---------- 781 agccc(gaaa --)gg-uga- --------ug ugg------- ---------- ---------- 841 --ucgcccuc u------a-a acgguaaau- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------GC U|--A----- -----|GUC- CG-------- gg-------- ---------- 1021 --(aac---- ---------- ---------- ---------c c--------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 ---------- ---------- ---------- ---------- ---------- ---------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- ---------- ---------- ---------- 1561 ---------- ---------- ---------- ---------- ---------- ---------- 1621 --------cc --C--GGGC| --GA|CAUG- C-U-C|AAAU |UG--C-GGG |AAAC----| 1681 C-CC------ ---------- ---------- -|U------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- --------AA AG|------C 1801 UC-------c CA-GC|U-AC C|-------- ---------- ---------- ---------- 1861 ---|AAG-C- CG-C-C-g-- -G-UC-(GAA A--------- ---------- ---------- 1921 ---------- -)-GAC--GG --C-G-G-U- G-G|----|C C-A-G-G-U- (uaacu---- 1981 ---------- --------)- GC-C-U-CG- G|-------G UA-C|GGU-C ACA-AC-GC- 2041 CGG-G-AG-| -auacau--- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- --GGG|-CGA -|UC-CGCA| GCC|-AAG-- 2221 |CCCC----- ------(--- ---------- ---------- ---------- ---------- 2281 ---------- ----)|-|U| AC-g--|guc c--------- ---------- ---------- 2341 (g-cga---- ---------- ---------- ---------- ---------- ---------- 2401 -------)-- ---------- ---------- ---------- ---------- -------|-- 2461 --------gg au-|A|C|-- ---------- GGGG|--AA| GGU|--UCA| GA-GACU-A| 2521 -GAU|GGG-U --A-UG|G|G UUggc----- ---------- -(gcuc---- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 --gccAGCU- |UAA-GA-UA |UA-GUC|C| -|gG-----| u----|gcca ggg------- 2761 ----(-GAAA ---------- )--------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---------- ---------- 2881 --|------c cc--u-g-g- c|-------- --|-agucag guauaccugu cacuacacgg 2941 g--------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---------- ---------- 3121 ---------- ---------- ---------- ---------- ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ---------- ---------- ---------- ---------- ---------- ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- ---------- 4021 ---|------ ---------- ---------- ---------- ---------- ---------- 4081 ---------- ---------- ---------- ---------- ---------- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- ---------- ---------- ---------- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------| -----Ca|G- -||~~~-~~~ ~~~~~~| // LOCUS Pen.c.1.1 4557 bp RNA RNA 31-OCT-1999 DEFINITION Penicilliopsis clavariiformis.; 18S ribosomal RNA; 18S rRNA. ACCESSION AB003945 KEYWORDS 18S ribosomal RNA; 18S rRNA. SOURCE Penicilliopsis clavariiformis. ORGANISM Penicilliopsis clavariiformis. REFERENCE 1 (sites) AUTHORS Ogawa,H. and Sugiyama,J. TITLE inferred from 18S rDNA sequence divergence Evolutionary relationships of the cleistothecial genera with Penicillium, Geosmithia, Merimbla and Sarophorum anamorphs as JOURNAL (in) Samason, R. A., Pitt and J. I. (Eds.); CLASSIFICATION OF PENICILLIUM AND ASPERGILLUS: INTEGRATION OF MODERN TAXONOMIC METHODS; Harwood Academic Publishers, Amsterdam, Netherlands (1999) In press STANDARD No information REFERENCE 2 (bases 1 to 2150) AUTHORS Ogawa,H. TITLE Direct Submission JOURNAL Submitted (16-MAY-1997) to the DDBJ/EMBL/GenBank databases. Hiroyuki Ogawa, The University of Tokyo, Institute of Molecular and Cellular Biosciences; Yayoi 1-1-1, Bunkyo-ku, Tokyo 113, Japan (E-mail: KFR00124@niftyserve.or.jp, Tel:03-3812-2111, Fax: 03-3818-0444) STANDARD No information COMMENTS Sequence information (bases 1 to 4557) Corresponding GenBank entry: AB003945 ---------------------------------------------------------------- LOCUS AB003945 2150 bp DNA PLN 31-OCT-1999 DEFINITION Penicilliopsis clavariaeformis gene for 18S rRNA, partial sequence, strain:IFO 9492. ACCESSION AB003945 NID g6172360 VERSION AB003945.1 GI:6172360 KEYWORDS 18S ribosomal RNA; 18S rRNA. SOURCE Penicilliopsis clavariaeformis (strain:IFO 9492) DNA. ORGANISM Penicilliopsis clavariiformis Eukaryota; Fungi; Ascomycota; Plectomycetes; Eurotiales; Trichocomaceae; Penicilliopsis. REFERENCE 1 (sites) AUTHORS Ogawa,H. and Sugiyama,J. TITLE Evolutionary relationships of the cleistothecial genera with Penicillium, Geosmithia, Merimbla and Sarophorum anamorphs as inferred from 18S rDNA sequence divergence JOURNAL (in) Samason, R. A., Pitt and J. I. (Eds.); CLASSIFICATION OF PENICILLIUM AND ASPERGILLUS: INTEGRATION OF MODERN TAXONOMIC METHODS; Harwood Academic Publishers, Amsterdam, Netherlands (1999) In press REFERENCE 2 (bases 1 to 2150) AUTHORS Ogawa,H. TITLE Direct Submission JOURNAL Submitted (16-MAY-1997) to the DDBJ/EMBL/GenBank databases. Hiroyuki Ogawa, The University of Tokyo, Institute of Molecular and Cellular Biosciences; Yayoi 1-1-1, Bunkyo-ku, Tokyo 113, Japan (E-mail:KFR00124@niftyserve.or.jp, Tel:03-3812-2111, Fax:03-3818-0444) FEATURES Location/Qualifiers source 1..2150 /organism="Penicilliopsis clavariiformis" /strain="IFO 9492" /db_xref="taxon:70111" rRNA join(<1..1149,1523..>2150) /product="18S rRNA" exon <1..1149 intron 1150..1522 /note="Group I intron" exon 1523..>2150 BASE COUNT 547 a 480 c 601 g 522 t BASE COUNT 97 a 107 c 123 g 71 t 4159 others ORIGIN 1 |caccacaag gcgU||a--- -------(-- --aacuuuua c-cgcua-gc c----gcagu 61 a-acuc---- ---------- --)------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- ---------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 ---------- ----u|Gcgc cg--|----- ---------a ac-|AGC--- ---------- 781 agccc(gaaa --)gg-gu-- --------ga uguggug--- ---------- ---------- 841 ----acccuc u------a-a acaguaaau- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------GC U|--A----- -----|GUC- CA-------- GC-------- ---------- 1021 ----ac---- ---------- ---------- ---------g ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 ---------- ---------- ---------- ---------- ---------- ---------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- ---------- ---------- ---------- 1561 ---------- ---------- ---------- ---------- ---------- ---------- 1621 --------GC --U--GGGC| --GA|CACG- C-U-C|AAAU |UG--C-GGG |AAAC----| 1681 C-CC------ ---------- ---------- -|uu------ ---------- ---------- 1741 ---------- ---------- ---------- ---------- --------AG AG|------C 1801 CU-------C UA-GC|U-AC C|-------- ---------- ---------- ---------- 1861 ---|AAG-C- CG-C-C-g-- -G-UC-(GAA A--------- ---------- ---------- 1921 ---------- -)-GAC--GG --C-G-G-U- G-G|----|C C-A-G-G-u- (uaauu---- 1981 ---------- --------)- cC-C-U-CG- G|-------G UA-C|GGU-G AUA-AC-GC- 2041 UAG-A-GG-| -au---u--- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- --GGG|-CAA -|UC-CGCA| GCC|-AAG-- 2221 |CCCC----- ------(--- ---------- ---------- ---------- ---------- 2281 ---------- ----)|-|U| AC----|guu cc-------- ---------- ---------- 2341 (g-cag---- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- -------|-- 2461 ------g-ga au-|A|C|-- ---------- GGGG|--AA| GGU|--UCA| GA-GACU-A| 2521 -AAU|GGG-U --G-UG|G|G UUGG-guccu cc-------- -(ggg----- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GGAGG 2701 ACaCCAGCu- |UAA-GA-UA |UA-GUC|C| -|GG-----| c----|gcca ggg------- 2761 ----(-GAAA ---------- )--------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---------- ---------- 2881 --|------c ca--u-g-g- c|-------- --|-gguuca gguauaccug ucuuaa---- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---------- ---------- 3121 ---------- ---------- ---------- ---------- ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ---------- ---------- ---------- ---------- ---------- ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- ---------- 4021 ---------- ---------- ---------- ---------- ---------- ---------- 4081 ---------- ---------- ---------- ---------- ---------- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- ---------- ---------- ---------- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- -----Cg|G- -||-ga-gcc ugcggc| // LOCUS Ste.c.1.1 4557 bp RNA RNA 28-JAN-191 DEFINITION Stephanoascus ciferrii. ACCESSION No information KEYWORDS No information. SOURCE Stephanoascus ciferrii. ORGANISM Stephanoascus ciferrii. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 4557) Corresponding GenBank entry: AB019362 LOCUS AB019362 2512 bp DNA PLN 15-APR-2000 DEFINITION Stephanoascus ciferrii gene for 18S rRNA, containing group I introns. ACCESSION AB019362 VERSION AB019362.1 GI:7576366 KEYWORDS 18S rRNA. SOURCE Stephanoascus ciferrii (strain:IFO 10918) DNA. ORGANISM Stephanoascus ciferrii Eukaryota; Fungi; Ascomycota; Saccharomycetes; Saccharomycetales; Dipodascaceae; Stephanoascus. REFERENCE 1 (bases 1 to 2512) AUTHORS Ueda,K. TITLE Identification of various group I introns within the 18S rDNA from the ascomycetous yeast Stephanoascus ciferrii JOURNAL Published Only in DataBase (2000) In press REFERENCE 2 (bases 1 to 2512) AUTHORS Ueda,K. TITLE Direct Submission JOURNAL Submitted (29-OCT-1998) to the DDBJ/EMBL/GenBank databases. Kumiko Ueda, Institute for Fermentation, Osaka, Yeast Section; 17-85, Juso-honmachi 2-chome, Yodogawaku, Osaka, Osaka 532-8686, Japan (E-mail:kumiueda@mb.infoweb.ne.jp, Tel:81-6-300-6337, Fax:81-6-300-6814) FEATURES Location/Qualifiers source 1..2512 /organism="Stephanoascus ciferrii" /strain="IFO 10918" /db_xref="taxon:44093" exon 1..1144 rRNA join(1..1144,1500..2102,2506..2512) /product="18S ribosomal RNA" intron 1145..1499 /note="group I intron" exon 1500..2102 intron 2103..2505 /note="group I intron" exon 2506..2512 BASE COUNT 712 a 495 c 621 g 684 t BASE COUNT 115 a 72 c 95 g 98 t 4177 others ORIGIN 1 |caccaccag gagU||a--- -------(-- --aacuuuua c-agcua-gc c----gcagu 61 a-acuc---- ---------- --)------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- ---------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 -------|-- ----u|Gcuc c---|----- --------aa aa-|AGCA-- ---------- 781 -gccu(gaaa --)gg-gu-- --------ua -guggug--- ---------- ---------- 841 -----ucuuc u--------- uu--uaau-- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 -------UGC U|--A----- -----|GUC- GA-------- UA-U------ ---------- 1021 --(uuu---- ---------- ---------- ---------u ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 ---------- ---------- ---------- ---------- ---------- ---------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- ---------- -)-------- ---------- 1561 ---------- ---------- ---------- ---------- ---------- ---------- 1621 -------GUA --U--CGGC| --AA|CACG- C-U-C|AAAU |UG--C-GGG |AAAU----| 1681 U-CC------ ---------- ---------- -|U------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- --------AA AG|------G 1801 CU-------- UU-AU|U-AC C|-------- ---------- ---------- ---------- 1861 ---|AAG-C- -U-A-A-C-- -A-UU-(GAA A--------- ---------- ---------- 1921 ---------- -)-GGU--GU --U-G-G-U- G-G|----|C C-G-a-G-c- (gaaaug--- 1981 ---------- ---------- cC-c-U--G- G|-------G UA-U|GGU-A AAA-AC-AU- 2041 AA--A-GC-| -A-------- ------|ugu uacaau---- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- --GGA|-UGA -|UC-CGCA| GCC|-AAG-- 2221 |CUCC----- ------(--- ---------- ---------- ---------- ---------- 2281 ---------- ----)|-|U| Aa----|guu cuu------- ---------- ---------- 2341 (g-aaa-a-- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- -------|-- 2461 -----aa-gg au-|A|u|-- ---------- GGAG|--AA| GGU|--UCA| GA-GACU-A| 2521 -AAU|GGG-U --G-UG|G|G UGUU------ ---------- -(ugu----- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---AACGCu- |UAA-GA-UA |UA-GUC|C| -|guc----| ca---|ugac u--------- 2761 ----(-GAAA ---------- )--------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---------- ---------- 2881 --|------- -a--g-u-c- a|-------- --|auggugg uaaccu---- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---------- ---------- 3121 ---------- ---------- ---------- ---------- ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ---------- ---------- ---------- ---------- ---------- ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- ---------- 4021 ---------- ---------- ---------- ---------- ---------- ---------- 4081 ---------- ---------- ---------- ---------- ---------- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- ---------- ---------- ---------- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ----uaaaa| -----cg|G- -||-ga-gcc ugcggc| // LOCUS Dac.cy.1.1 4557 bp RNA RNA 23-JUN-1999 DEFINITION Dactylella cylindrospora.. ACCESSION No information KEYWORDS No information. SOURCE Dactylella cylindrospora. ORGANISM Dactylella cylindrospora. REFERENCE 1 (sites) AUTHORS Scholler,M., Hagedorn,G. and Rubner,A. TITLE generic concept A reevaluation of predatory orbiliaceous fungi. II. A new JOURNAL Sydowia 51, 89-113 (1999) STANDARD No information COMMENTS Sequence information (bases 1 to 4557) Corresponding GenBank entry: AF106538 POS 943 LOCUS AF106538 2040 bp DNA PLN 23-JUN-1999 DEFINITION Dactylella cylindrospora 18S small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence. ACCESSION AF106538 NID g5139071 VERSION AF106538.1 GI:5139071 KEYWORDS . SOURCE Dactylella cylindrospora. ORGANISM Dactylella cylindrospora Eukaryota; Fungi; Ascomycota; mitosporic Ascomycota; Dactylella. REFERENCE 1 (bases 1 to 2040) AUTHORS Scholler,M., Hagedorn,G. and Rubner,A. TITLE A reevaluation of predatory orbiliaceous fungi. II. A new generic concept JOURNAL Sydowia 51, 89-113 (1999) REFERENCE 2 (bases 1 to 2040) AUTHORS Hagedorn,G. and Scholler,M. TITLE A reevaluation of predatory orbiliaceous fungi. I. Phylogenetic analysis using rDNA sequence data JOURNAL Sydowia 51, 27-48 (1999) REFERENCE 3 (bases 1 to 2040) AUTHORS Hagedorn,G. and Scholler,M. TITLE Direct Submission JOURNAL Submitted (13-NOV-1998) Institute for Plant Virology, Microbiology, and Biosafety, Federal Biological Research Centre for Agriculture and Forestry, Koenigin-Luise-Str. 19, Berlin 14195, Germany FEATURES Location/Qualifiers source 1..2040 /organism="Dactylella cylindrospora" /strain="CBS 325.70" /note="directly sequenced PCR product, primer NS5-ITS4" /db_xref="taxon:97334" /tissue_type="mycelium" rRNA <1..1459 /product="18S small subunit ribosomal RNA" intron 36..411 intron 1013..1428 misc_RNA 1460..1644 /product="internal transcribed spacer 1" rRNA 1645..1800 /product="5.8S ribosomal RNA" misc_RNA 1801..2007 /product="internal transcribed spacer 2" BASE COUNT 543 a 473 c 541 g 483 t BASE COUNT 105 a 102 c 116 g 78 t 4156 others ORIGIN 1 |caccaccag augU||a--- -------(-- --aacc---- ---gu-a-gu u--------- 61 a-acuc---- ---------- --)------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- ---------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 -------|-- ----u|Gcau cug-|----- ---------- aa-|AGCC-- ---------- 781 gucuc(ggga --)gu-agc- ---------a uccug----a agg-----uu g---a-aucu 841 g---gcccu- -------g-u ucgcaau--- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 -------GGC U|--A----- -----|GUC- CA-------a GC-U------ ---------- 1021 --(uuu---- ---------- ---------- ---------u c--------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 ---------- ---------- ---------- ---------- ---------- ---------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- ---------- -|-------- ---------- 1561 ---------- ---------- ---------- ---------- ---------- ---------- 1621 -------AGC --U--GGGC| --AA|CACC- C-U-C|AAAU |UG--C-GGG |AAAC----| 1681 U-CC------ ---------- ---------- -|U------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- --------AA AG|------C 1801 UG-------C UG-AA|C-AC C|-------- ---------- ---------- ---------- 1861 ---|AAA-C- CU-G-A---- -C-CG-(GUA A--------- ---------- ---------- 1921 ---------- -)-CGG--UU --G-G-G-U- G-G|----|C CGC-C-C-U- (gaaa----- 1981 ---------- --------)- GG-GuG-CG- G|-------G UA-U|GGU-A ACA-GA-GU- 2041 CAG-C-AG-| -A-------- ------|uug cucgcc---- ---------- --(agcg--- 2101 ---)------ ---g-gccag caa|-----a u|-------- ---------- ---------- 2161 ---------- ---------- ---------- --GGA|-CGA -|UC-CGCA| GCC|-AAG-- 2221 |CGACCGGUU ------(caa ac-------- ---------- ---------- ---------- 2281 ---------- ----)|-|-| ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---|c|c|-- -----AACCG GUUG|--AA| GGU|--UCA| GA-GACU-A| 2521 -GAU|GGG-G --G-UG|g|G UUUUcaa--- ---------- -(aaac---- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 uugAAGGCU- |UAA-GG-UA |UA-GUC|C| -|aG-----| cc---|guuc cagc------ 2761 ----(-GAAA ---------- )--------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---------- ---------- 2881 --|------- gc--a-a-a- c|g------- --|ggucagg c-----a--- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---------- ---------- 3121 ---------- ---------- ---------- ---------- ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ---------- ---------- ---------- ---------- ---------- ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- ---------- 4021 ---------- ---------- ---------- ---------- ---------- ---------- 4081 ---------- ---------- ---------- ---------- ---------- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- ---------- ---------- ---------- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------| -----AU|G- -||gga-gcc ugcggc| // LOCUS Ust.m.1.1 4557 bp RNA RNA 28-JAN-191 DEFINITION Ustilago maydis. ACCESSION No information KEYWORDS No information. SOURCE Ustilago maydis. ORGANISM Ustilago maydis. REFERENCE 1 (sites) AUTHORS De Wachter,R., Neefs,J.M., Goris,A. and Van de Peer,Y. TITLE The gene coding for small ribosomal subunit RNA in the... JOURNAL Nucleic Acids Res. 20, 1251-1257 (1992) STANDARD No information COMMENTS Sequence information (bases 1 to 4557) Corresponding GenBank entry: X62396 intron 1159..1569 /number=1 BASE COUNT 126 a 96 c 115 g 92 t 4128 others ORIGIN 1 |~~~~accag gagU||a--- -------(-- --aacuuuca cagcua--gc c----gcagu 61 g-ucuc---- ---------- --)------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- ---------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 -------|-- ----u|Gcuc c---|----- --------aa aa-|AGCC-- ---------- 781 -gccu(gaaa --)gg-gu-- --------(c ggugcg---u guuccuauuu ga-------- 841 --aauaau-- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 -------GGC U|--A----- -----|GUC- UG-------- au-------- ---------- 1021 --(gcg---- ---------- ---------- ---------a ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 ---------- ---------- ---------- ---------- ---------- ---------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- ---------- -)-------- ---------- 1561 ---------- ---------- ---------- ---------- ---------- ---------- 1621 --------au --C--AGGC| --GA|CACA- U-C-C|AAAU |UG--C-GGG |AAAC----| 1681 U-CC------ ---------- ---------- -|Uu------ ---------- ---------- 1741 ---------- ---------- ---------- ---------- --------AG AG|------C 1801 UC-------- UA-GC|U-AC C|-------- ---------- ---------- ---------- 1861 ---|GCg-g- cc-C-C---- -A-UC-(GUG A--------- ---------- ---------- 1921 ---------- -)-GAUuaGG --gug-c-a- G-C|a---|C C-A-G-G-U- (uaaug---- 1981 ---------- --------)- GC-C-U-CG- G|-------G UA-U|GGU-A AAA-AC-GC- 2041 UA--G-AG-| -Auu------ ------|--- ---------- ---------- ---------- 2101 ---------- ---------- ---------- -|-------- ---------- ---------- 2161 ---------- ---------- ---------- --GGA|-CAA -|UC-CGCA| GCC|-AAG-- 2221 |ccucuuc-- ------(gca a--------- ---------- ---------- ---------- 2281 ---------- ----)|-|-| ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 -------)-- ---------- ---------- ---------- ---------- -------|-- 2461 ---------- -------|-- -------gaa gugg|--AA| GGU|--UCA| GA-GACU-A| 2521 -AAU|GGU-U --G-UG|G|G UGgcagac-- ---------- -(gguuucgc gaauguauga 2581 aucaaucaua aacacgugaa ggaa------ ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------) ---------g 2701 ucugcUGCU- |UAA-GA-UA |UA-GUC|C| -|GA-----| g----|ccac agg------- 2761 ----(-GAAA ---------- )--------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---------- ---------- 2881 --|------- cc--u-u-g- g|gaa----- --|-uuuugg ---------- -(caacaaa- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- )--------- ---------- ---------- 3121 ---------- ---------- ---------- ---------- ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ---------- ---------- ---------- ---------- ---------- ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- -------ccg 4021 aaa|ca---- ---------- ---------- ---------- ---------- ---------- 4081 ---------- ---------- ---------- ---------- ---------- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- ---------- ---------- ---------- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ----gauaaa uaaca----| -----UC|G- -||gga-gcc ugc~~~| // LOCUS Aje.c.5.1 4557 bp RNA RNA 15-JAN-1996 DEFINITION Ajellomyces capsulatus subsp. was Histoplasma capsulatum str. CBS213. ACCESSION No information KEYWORDS No information. SOURCE Ajellomyces capsulatus subsp. was Histoplasma capsulatum str. CBS213. ORGANISM Ajellomyces capsulatus. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 4557) Corresponding GenBank entry: Z75305 LOCUS HC18SI1C1 408 bp DNA PLN 10-DEC-1999 DEFINITION H.capsulatum ssp. capsulatum 18S rRNA gene, 1C1 intron. ACCESSION Z75305 VERSION Z75305.1 GI:1419548 KEYWORDS 18S ribosomal RNA; 18S rRNA gene; small subunit ribosomal RNA. SOURCE Ajellomyces capsulatus. ORGANISM Ajellomyces capsulatus Eukaryota; Fungi; Ascomycota; Onygenales; Onygenaceae; Ajellomyces. REFERENCE 1 (bases 1 to 408) AUTHORS Okeke,C.N., Kappe,R., Zakikhani,S., Nolte,O. and Sonntag,H.G. TITLE Ribosomal genes of Histoplasma capsulatum var. duboisii and var. farciminosum JOURNAL Mycoses 41 (9-10), 355-362 (1998) MEDLINE 99114487 REFERENCE 2 (bases 1 to 408) AUTHORS Kappe,R. TITLE Direct Submission JOURNAL Submitted (06-JUL-1996) Reinhard Kappe, Hygiene & Med. Microbiology, University of Heidelberg, Hygiene Institute, Im Neuenheimer Feld 324, Heidelberg, D-69120, Germany FEATURES Location/Qualifiers source 1..408 /organism="Ajellomyces capsulatus" /sub_species="capsulatum" /strain="CBS213.53" /db_xref="taxon:5037" gene 1..408 /gene="18S rRNA" intron 1..408 /gene="18S rRNA" /note="group 1C1 intron inserted in small ribosomal subunit (18S) rRNA at position 1165 (Saccharomyces cerevisiae numbering)" BASE COUNT 112 a 94 c 107 g 95 t BASE COUNT 112 a 94 c 107 g 95 t 4149 others ORIGIN 1 |~~~~~~~~~ ~~~~||a--- -------(-- --aacacuug cauguuuugc c----gcagc 61 a-acuc---- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- ---------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 -------|-- ----u|Gcgc cg--|----- ---------a aa-|AGCA-- ---------- 781 -gccc(gaaa --)gg-gu-- ---------g augu------ (ggu-gcccu ug-------- 841 --gacaaaa- --------)) auauuaaa-- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 -------UGC U|--A----- -----|GUC- CG-------- gc-cu----- ---------- 1021 --(ucu---- ---------- ---------- ---------c ac-------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 ---------- ---------- ---------- ---------- ---------- ---------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- ---------- -)-------- ---------- 1561 ---------- ---------- ---------- ---------- ---------- ---------- 1621 ------aggc --U--GGGC| --GA|CACA- C-U-C|AAAC |UG--C-GGG |AAAC----| 1681 C-CC------ ---------- ---------- -|U------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- --------AA AG|------C 1801 CU-------- UC-AC|U-AC C|-------- ---------- ---------- ---------- 1861 ---|AAG-C- UG-U-G-U-- -U-UC-(GAA A--------- ---------- ---------- 1921 ---------- -)-GGA--CA --U-G-G-U- G-G|----|C C-A-G-G-U- (uaauu---- 1981 ---------- --------)- GC-C-U-CG- G|-------G UA-C|GGU-C ACA-AC-GU- 2041 GA--A-GG-| -A-------- ------|ug- ---------- ---------- --(uu-c--- 2101 ----)----- ---------- -ca|-----a u|-------- ---------- ---------- 2161 ---------- ---------- ---------- --GGG|-CAA -|UC-CGCA| GCC|-AAG-- 2221 |CCCC----- ------(--- ---------- ---------- ---------- ---------- 2281 ---------- ----)|-|U| AC----|gug uagugucugu ---------- ---------- 2341 (a-aua-cu- ---------- ---------- ---------- ---------- ---------- 2401 -------)-- ---------- ---------- ---------- ---------- -------|ac 2461 agacauu-uc au-|A|U|-- ---------- gggg|--AA| GGU|--UCA| GA-GACU-A| 2521 -AAU|GGG-U --G-UG|G|G UGcguuacu- ---------- -(cuuga--- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- --------ag 2701 ugacaAGCU- |UAA-GA-UA |UA-GUC|C| -|Gg-----| -----|cuuc agua------ 2761 ----(-GAAA ---------- )--------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---------- ---------- 2881 --|-----ug cu--g-g-a- g|-------- --|-aucagg u--------- -(ucc----- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---------- ---------- 3121 ---------- ---------- ---------- ---------- ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ---------- ---------- ---------- ---------- ---------- ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---|------ ---------- ------accu 4021 gug|------ ---------- ---------- ---------- ---------- ---------- 4081 ---------- ---------- ---------- ---------- ---------- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- ---------- ---------- ---------- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------| --------au uaaa-----| -----aC|G- -||~~~-~~~ ~~~~~~| // LOCUS Exo.d.2.2 4557 bp RNA RNA 15-JAN-1996 DEFINITION Exophiala dermatitidis. ACCESSION No information KEYWORDS No information. SOURCE Exophiala dermatitidis. ORGANISM Exophiala dermatitidis. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 4557) Corresponding GenBank entry: Z75304 RA Zakikhani S., Kappe R.; RT "The gene coding for small ribosomal subunit RNA in the ascomycete RT Exophiala/Wangiella dermatitidis contains two introns."; RL Unpublished. XX RN [2] RP 1-426 RA Kappe R.; RT ; RL Submitted (06-JUL-1996) to the EMBL/GenBank/DDBJ databases. RL Reinhard Kappe, Hygiene & Med. Microbiology, University of RL Heidelberg, Hygiene Institute, Im Neuenheimer Feld 324, Heidelberg, RL D-69120, Germany BASE COUNT 110 a 101 c 119 g 96 t 4131 others ORIGIN 1 |~~~~~~~~~ ~~~~||a--- -------(-- --aacuguuc acaguuucua c----gaaag 61 ccguaguuaa cuc------- --)------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- ---------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 -------|-- ----u|Gcgc ca--|----- ---------u aa-|AGCA-- ---------- 781 -gccc(gaua a-)gg-gu-- ---------g uggu------ (gagugcg-- ---------- 841 ---------- --------)) gccuuaaa-- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 -------UGC U|--A----- -----|GUC- CG-------- cu-ggag--- ---------- 1021 --(ugg---- ---------- ---------- ---------g cucccuucgg gggguuuuc- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 ---------- ---------- ---------- ---------- ---------- ---------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- ---------- -)-------- ---------- 1561 ---------- ---------- ---------- ---------- ---------- ---------- 1621 ----cucugg --C--GGGC| --GA|CACC- C-U-C|AAAC |UGuuC-GGG |GAAG----| 1681 C-CC------ ---------- ---------- -|U------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- --------AA AG|------C 1801 UC-------- UG-UC|UUAC C|-------- ---------- ---------- ---------- 1861 ---|AAG-C- UA-C-G-C-- -G-UU-(GAU AA-------- ---------- ---------- 1921 ---------- -)-GAC--CG --U-A-G-U- G-G|----|C C-C-G-G-U- (uaaug---- 1981 ---------- --------)- AC-CAG--G- G|-------G UA-U|GGU-A ACA-AC-GG- 2041 AAA-G-AG-| -A-------- ------|ug- ---------- ---------- --(uc-a--- 2101 ----)----- ---------- -ca|-----a u|-------- ---------- ---------- 2161 ---------- ---------- ---------- --GGG|-UGA -|UC-CGCA| GCC|-AAA-- 2221 |CACCC---- ------(--- ---------- ---------- ---------- ---------- 2281 ---------- ----)|-|G| AC----|uuc ---------- ---------- ---------- 2341 (g-gaa---- ---------- ---------- ---------- ---------- ---------- 2401 -------)-- ---------- ---------- ---------- ---------- -------|-- 2461 ---------g aa-|G|A|-- ---------g ggug|--CA| GGU|--UCA| GA-GACU-A| 2521 -AAU|GGG-G --G-UG|G|G UUuggaaaac gga------- -(ccu----- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------) ----ucuauu 2701 ucccaAGCC- |UAA-GA-UA |UA-GUC|C| -|Aa-----| u----|cccc uagg------ 2761 ----(-GAAA ---------- )--------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---------- ---------- 2881 --|-----cu ua--g-g-g- g|-------- --|-cuacu- ---------- -(accucuuc 2941 a--------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- )--------- ---------- ---------- 3121 ---------- ---------- ---------- ---------- ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ---------- ---------- ---------- ---------- ---------- ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---|------ ---------- --------ag 4021 uag|------ ---------- ---------- ---------- ---------- ---------- 4081 ---------- ---------- ---------- ---------- ---------- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- ---------- ---------- ---------- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------| -----gaucc uucaa----| -----aU|G- -||~~~-~~~ ~~~~~~| // LOCUS Pul.p.1.2 4557 bp RNA RNA 07-JAN-1999 DEFINITION Pullularia prototropha.. ACCESSION No information KEYWORDS No information. SOURCE Pullularia prototropha. ORGANISM Pullularia prototropha. REFERENCE 1 (sites) AUTHORS Haase,G. and Melzer-Krick,B. JOURNAL Unpublished STANDARD No information COMMENTS Sequence information (bases 1 to 4557) Corresponding GenBank entry: X91900 LOCUS PP18SRRN2 464 bp DNA PLN 07-JAN-1999 DEFINITION P.prototropha 18S ribosomal RNA (intron 2). ACCESSION X91900 NID g4138356 KEYWORDS 18S ribosomal RNA; 18S rRNA gene. SOURCE Pullularia prototropha. ORGANISM Pullularia prototropha Eukaryota; Fungi; Ascomycota; Euascomycetes; Loculoascomycetes ; Dothideales; Herpotrichiellaceae; mitosporic Herpotrichiellace ae; Pullularia. REFERENCE 1 (bases 1 to 464) AUTHORS Haase,G. and Melzer-Krick,B. JOURNAL Unpublished REFERENCE 2 (bases 1 to 464) AUTHORS Haase,G. TITLE Direct Submission JOURNAL Submitted (02-OCT-1995) G. Haase, Institute of Medical Microbiology, Klinikum RWTH, D- 52057 Aachen, FRG FEATURES Location/Qualifiers source 1..464 /organism="Pullularia prototropha" /strain="CBS 534.94" /db_xref="taxon:86340" rRNA 1..464 /gene="18S rRNA" /note="intron 2" /product="18S ribosomal RNA" gene 1..464 /gene="18S rRNA" BASE COUNT 112 a 119 c 124 g 99 t 10 others BASE COUNT 112 a 119 c 124 g 99 t 4103 others ORIGIN 1 |~~~~~~~~~ ~~~~||a--- -------(-- --aacuguuc gcaguu--gc uaccau-aag 61 ccguaguuaa cuc------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- ---------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 -------|-- ----u|Gcgc cu--|----- ---------a aa-|AGCA-- ---------- 781 -gucc(gaua a-)gg-gu-- ---------g auguggugug ---------- ---------- 841 ---------- ---------- accuuaaa-- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 -------UGC U|--A----- -----|GUC- CG------ac cg-gggu--- -----g---- 1021 --(auc---- ---------- ---------- ---------c auuuuggaca c--------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 ---------- ---------- ---------- ---------- ---------- ---------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- ---------- -)-------- --c-ac---- 1561 ---------- ---------- ---------- ---------- ---------- ---------- 1621 ----c-cugc --C--GGGC| --GA|CACC- C-U-C|AAAU |UGuuC-GGG |GAAG----| 1681 C-CC------ ---------- ---------- -|U------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- --------AA AG|------C 1801 UC-------C GU-CC|U-AC C|-------- ---------- ---------- ---------- 1861 ---|AAG-C- CA-U-G-C-- -G-UU-(GAA A--------- ---------- ---------- 1921 ---------- -)-GAC--CG --U-G-G-C- G-G|----|C C-C-G-G-U- (uaaug---- 1981 ---------- --------)- GC-CUG--G- G|-------G UA-U|GGU-A AUA-AC-GG- 2041 CCG-G-AG-| -A-------- ------|ug- ---------- ---------- --(cu-a--- 2101 ----)----- ---------- -ca|-----a u|-------- ---------- ---------- 2161 ---------- ---------- ---------- --GGG|-UCA -|UC-CGCA| GGC|-AAA-- 2221 |CACCC---- ------(--- ---------- ---------- ---------- ---------- 2281 ---------- ----)|-|g| cc----|cuc uuuc------ ---------- ---------- 2341 (a-ccu-g-- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ----gaa-ag -a-|g|a|-- ---------g ggug|--UA| GGU|--UCA| GA-GACU-A| 2521 -AAU|GGG-G --G-UG|G|G UUUGGa---- ---------- -(gacgguua cucaccsmag 2581 ucacccuaaa cguaagacca auuuncuggg unanc----- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 -cccAAGNU- |UAN-GA-UN |UU-GCC|C| -|cac----| cc---|cccc ggg------- 2761 ----(-GAAA ---------- )--------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---------- ---------- 2881 --|-----cu -c--g-g-g- g|uag----- --|-cacuun cu-------- -----guu-- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---------- ---------- 3121 ---------- ---------- ---------- ---------- ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ---------- ---------- ---------- ---------- ---------- ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---|------ ---------- --------ag 4021 uag|------ ---------- ---------- ---------- ---------- ---------- 4081 ---------- ---------- ---------- ---------- ---------- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- ---------- ---------- ---------- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- -----g-uc- -ncaa----- ---aaau|-- ---------- ------| // LOCUS Exo.d.1.2 4557 bp RNA RNA 28-JAN-191 DEFINITION Exophiala dermatitidis. ACCESSION No information KEYWORDS No information. SOURCE Exophiala dermatitidis. ORGANISM Exophiala dermatitidis. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 4557) Corresponding GenBank entry: X78481 LOCUS WD18SRRN 1078 bp DNA INV 26-MAY-1995 DEFINITION W.dermatitidis (ATCC 34100) gene for 18S ribosomal RNA. ACCESSION X78481 KEYWORDS 18S ribosomal RNA. SOURCE Exophiala dermatitidis. ORGANISM Exophiala dermatitidis Eukaryotae; mitochondrial eukaryotes; Metazoa/Eumycota group; Eumycota; Ascomycotina; Chaetothyriales; mitosporic Chaetothyriales; Exophiala. REFERENCE 1 (bases 1 to 1078) AUTHORS Podbielski,A. TITLE Direct Submission JOURNAL Submitted (24-MAR-1994) to the EMBL/GenBank/DDBJ databases. A. Podbielski, Institut f Med Mikrobiologie an der, Rhein W. Techn. Hochschule Aachen, Pauwelsstr Klinikum, 52057 Aachen, FRG REFERENCE 2 (bases 1 to 1078) AUTHORS Haase,G. and Podbielksi,A. TITLE Phylogenetic analysis of ten black yeast species using nuclear small subunit rRNA gene sequences JOURNAL Unpublished COMMENT NCBI gi: 840918 FEATURES Location/Qualifiers source 1..1078 /organism="Wangiella dermatitidis" /strain="ATCC 34100" /isolate="biotype 8656" rRNA <1..>1078 /product="18S ribosomal RNA" BASE COUNT 265 a 255 c 299 g 258 t 1 others ORIGIN BASE COUNT 115 a 115 c 126 g 99 t 4102 others ORIGIN 1 |caccaccag gcgU||a--- -------(-- --aacuguuc acaguuucua c----gaaag 61 ccguaguuaa cuc------- --)------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- ---------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 -------|-- ----u|Gcgc ca--|----- ---------u aa-|AGCA-- ---------- 781 -gccc(gaua a-)gg-gu-- ---------g uggu------ (gagugcg-- ---------- 841 ---------- ---------) gccuuaaa-- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 -------UGC U|--A----- -----|GUC- CG-------- cu-ggag--- ---------- 1021 --(ugg---- ---------- ---------- ---------g cucccuucgg gggguuuuc- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 ---------- ---------- ---------- ---------- ---------- ---------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- ---------- -)-------- ---------- 1561 ---------- ---------- ---------- ---------- ---------- ---------- 1621 ----cucugg --C--GGGC| --GA|CACC- C-U-C|AAAC |UGuuC-GGG |GAAG----| 1681 C-CC------ ---------- ---------- -|U------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- --------AA AG|------C 1801 UC-------U GU-CC|U-AC C|-------- ---------- ---------- ---------- 1861 ---|AAG-C- UA-C-G-C-- -G-UU-(GAU AA-------- ---------- ---------- 1921 ---------- -)-GAC--CG --U-A-G-U- G-G|----|C C-C-G-G-U- (uaaug---- 1981 ---------- --------)- AC-CAG--G- G|-------G UA-U|GGU-A ACA-AC-GG- 2041 AAA-G-AG-| -A-------- ------|ug- ---------- ---------- --(uc-a--- 2101 ----)----- ---------- -ca|-----a u|-------- ---------- ---------- 2161 ---------- ---------- ---------- --GGG|-UGA -|UC-CGCA| GCC|-AAA-- 2221 |CACCC---- ------(--- ---------- ---------- ---------- ---------- 2281 ---------- ----)|-|g| ac----|cuu c--------- ---------- ---------- 2341 (--gga-a-- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------g aa-|G|A|-- ---------g ggug|--CA| GGU|--UCA| GA-GACU-A| 2521 -AAU|GGC-G --GUUG|G|G UUUGGaaaa- ---------- -(cggaccuu cua------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- --------uu 2701 ucccAAGCC- |UAA-GA-UA |UA-GUC|C| -|aa-----| uc---|cccc uagg------ 2761 ----(-GAAA ---------- )--------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---------- ---------- 2881 --|-----cu ua--g-g-a- g|gua----- --|-cuaccu c--------- --------uu 2941 ca-------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---------- ---------- 3121 ---------- ---------- ---------- ---------- ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ---------- ---------- ---------- ---------- ---------- ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---|------ ---------- --------aa 4021 uag|------ ---------- ---------- ---------- ---------- ---------- 4081 ---------- ---------- ---------- ---------- ---------- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- ---------- ---------- ---------- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- -----ggucc uucaa----- ----auu|G- -||gga-gcc uccggc| // LOCUS Gra.b.1.1 4557 bp RNA RNA 28-JAN-191 DEFINITION Graphium basitruncatum. ACCESSION No information KEYWORDS No information. SOURCE Graphium basitruncatum. ORGANISM Graphium basitruncatum. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 4557) Corresponding GenBank entry: AB038421 LOCUS AB038421 2526 bp DNA PLN 08-AUG-2000 DEFINITION Graphium basitruncatum gene for 18S rRNA, partial sequence, strain:JCM 8083. ACCESSION AB038421 VERSION AB038421.1 GI:9757608 KEYWORDS 18S rRNA; 18S ribosomal RNA. SOURCE Graphium basitruncatum (strain:JCM 8083) DNA. ORGANISM Graphium basitruncatum Eukaryota; Fungi; Ascomycota; Ophiostomatales; Ophiostomataceae; anamorphic Ophiostomataceae; Graphium. REFERENCE 1 (sites) AUTHORS Okada,G., Jacobs,K., Kirisits,T., Louis-Seize,G.W., Seifert,K.A., Sugita,T., Takematsu,A. and Wingfield,M.J. TITLE Epitypification of Graphium penicillioides Corda, with comments on the phylogeny and taxonomy of graphium-like synnematous fungi JOURNAL Stud. Mycol. 45, 169-188 (2000) REFERENCE 2 (bases 1 to 2526) AUTHORS Okada,G. TITLE Direct Submission JOURNAL Submitted (15-FEB-2000) to the DDBJ/EMBL/GenBank databases. Gen Okada, RIKEN (The Institute of Physical and Chemical Research), Japan Collection of Microorganisms; Hirosawa 2-1, Wako, Saitama 351-0198, Japan (E-mail:okada@jcm.riken.go.jp, URL:http://www.jcm.riken.go.jp/, Tel:+81-48-462-1111(ex.5124), Fax:+81-48-462-4619) COMMENT The sequence was determined by A. Takematsu. FEATURES Location/Qualifiers source 1..2526 /organism="Graphium basitruncatum" /strain="JCM 8083" /db_xref="taxon:118975" rRNA join(<1..1143,1514..1772,2181..>2526) /note="corresponding to 24-1774 nt positon of 18S rRNA in S. cerevisiae (M27607)" /product="18S rRNA" intron 1144..1513 /note="group I intron just after 1165 nt position in S. cerevisiae." intron 1773..2180 /note="group I intron just after 1427 nt position in S. cerevisiae." BASE COUNT 595 a 623 c 728 g 572 t 8 others BASE COUNT 80 a 119 c 137 g 52 t 4169 others ORIGIN 1 |caccaccag gggU||a--- -------(-- --aacug--a agccguaucg cuc------- 61 ---------- ---------- --)------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- ---------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 ---------- ----u|Gccc c---|----- --------ga aa-|AGCGa- ---------- 781 -gccc(guaa c-)gg-gu-- ---------- ---ucggugg uugccggcau ---------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 ----u--CGC U|--Ag---- -----|GUC- CC-------- Cg-u------ ---------- 1021 --(cca---- ---------- ---------- ---------g ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 ---------- ---------- ---------- ---------- ---------- ---------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- ---------- ---------- ---------- 1561 ---------- ---------- ---------- ---------- ---------- ---------- 1621 -------gcG --G--GGGC| --GA|CACC- C-U-C|AACG |UG--C-GGG |GAAC----| 1681 C-CU------ ---------- ---------- -|C------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- --------GA AG|------G 1801 GC-------A CC-AC|U-CC U|-------- ---------- ---------- ---------- 1861 ---|AAG-U- AA-C-G---- -G-UC-(GAA A--------- ---------- ---------- 1921 ---------- -)-GAC--GC --GCU-A-U- G-G|----|c ggc-g-c-c- -guaau---- 1981 ---------- --------)- ggcc-g-cc- g|-------G UA-C|AGG-G AAA-AC-GU- 2041 GGU-G-CU-| -uagg----- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- --AGG|-CGA -|UU-CGCA| GCC|-AAG-- 2221 |cuccu---- ------(--- ---------- ---------- ---------- ---------- 2281 ---------- ----)|-|A| C--------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- -------ccc 2461 gccuccgggg cg--c-a|-- ---------g ggag|--AA| GGU|--CCA| GA-GACU-U| 2521 -GAC|GGG-G --G-UG|G|G GU-------- ---------- -(-gngcgcg cagcccgcgc 2581 cnnngn---- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 -----GCC-- |UAA-GA-UA |AA-GUC|C| -|gu----g- -----|ccug cgc------- 2761 ----(-GAGA ---------- )--------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---------- ---------- 2881 --|------g cg--c-g-g- g|-------- --|-aaugcu ---------- --cua----- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---------- ---------- 3121 ---------- ---------- ---------- ---------- ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ---------- ---------- ---------- ---------- ---------- ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- ---------c 4021 agc|------ ---------- ---------- ---------- ---------- ---------- 4081 ---------- ---------- ---------- ---------- ---------- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- ---------- ---------- ---------- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- --------ag agccccgaa| -----ca|G- -||ggg---a ugcggc| // LOCUS Gra.p.1.1 4557 bp RNA RNA 30-MAR-1999 DEFINITION Graphium penicillioides.. ACCESSION No information KEYWORDS No information. SOURCE Graphium penicillioides. ORGANISM Graphium penicillioides. REFERENCE 1 (sites) AUTHORS Okada,G., Seifert,K.A., Takematsu,A., Yamaoka,Y., Miyazaki,S. and Tubaki,K. TITLE A molecular phylogenetic reappraisal of the Graphium complex based on 18S rDNA sequences JOURNAL Can. J. Bot. 76, 1495-1506 (1998) STANDARD No information COMMENTS Organism information Culture collection: JCM 9299 (CBS470.71) Sequence information (bases 1 to 4557) Corresponding GenBank entry: AB007681 LOCUS AB007681 2105 bp DNA PLN 30-MAR-1999 DEFINITION Graphium penicillioides gene for 18S rRNA, partial sequence, strain:JCM9299 (CBS470.71). ACCESSION AB007681 NID g4586362 VERSION AB007681.1 GI:4586362 KEYWORDS 18S ribosomal RNA. SOURCE Graphium penicillioides (strain:JCM9299 (CBS470.71)) DNA. ORGANISM Graphium penicillioides Eukaryota; Fungi; Ascomycota; Euascomycetes; Pyrenomycetes; Microascales; Microascaceae; mitosporic Microascaceae; Graphium. REFERENCE 1 (sites) AUTHORS Okada,G., Seifert,K.A., Takematsu,A., Yamaoka,Y., Miyazaki,S. and Tubaki,K. TITLE A molecular phylogenetic reappraisal of the Graphium complex based on 18S rDNA sequences JOURNAL Can. J. Bot. 76, 1495-1506 (1998) REFERENCE 2 (bases 1 to 2105) AUTHORS Okada,G. and Takematsu,A. TITLE Direct Submission JOURNAL Submitted (28-SEP-1997) to the DDBJ/EMBL/GenBank databases. Gen Okada, The Institute of Physical and Chemical Research (RIKEN), Japan Collection of Microorganisms; Hirosawa 2-1, Wako, Saitama 351-0198, Japan (E-mail:okada@ulmus.riken.go.jp, Tel:+81-48-462-1111(ex.5124), Fax:+81-48-462-4619) COMMENT The sequence was determined by A. Takematsu. FEATURES Location/Qualifiers source 1..2105 /organism="Graphium penicillioides" /strain="JCM9299 (CBS470.71)" /db_xref="taxon:67620" rRNA join(<1..1142,1501..>2105) /note="Corresponding to 24-1774 nt positon of 18S rRNA S. cerevisiae: Acc#(M27607)" /product="18S rRNA" intron 1143..1500 /note="group I intron just after 1165 nt position in S. cerevisiae" BASE COUNT 528 a 490 c 586 g 494 t 7 others BASE COUNT 82 a 115 c 128 g 50 t 4182 others ORIGIN 1 |caccaccag gggU||a--- -------(-- --aacugcaa agccguaucg cuc------- 61 ---------- ---------- --)------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- ---------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 ---------- ----u|Gccc c---|----- --------gg aa-|AGCga- ---------- 781 -gccc(guaa c-)gg-gu-- ---------- ---ccagugg ucgccggcau ---------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 ----u--CGC U|--Aa---- -----|GUCu gc-------- ---------- ---------- 1021 --(acg---- ---------- ---------- ---------c gca------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 ---------- ---------- ---------- ---------- ---------- ---------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- ---------- -)-------- ---------- 1561 ---------- ---------- ---------- ---------- ---------- ---------- 1621 ---------- --G--cGGC| --GA|CACC- C-U-C|AAAU |UG--C-GGG |GAAC----| 1681 C-CU------ ---------- ---------- -|C------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- --------GA AG|------G 1801 GC-------G UC-AC|U-CC U|-------- ---------- ---------- ---------- 1861 ---|AAG-G- AC-G------ -G-UC-(gaa a--------- ---------- ---------- 1921 ---------- -)-GGC--GC --GCU-A-U- G-G|----|n g-c-a-g-c- (guaacg--- 1981 ---------- --------)- gc-u-g--c- n|-------n UA-C|AGG-G ACA-AC-GU- 2041 GAn-c-cu-- ---------- -agg------ ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- --AGG|-CGA -|UU-CGAA| GCC|-AAG-- 2221 |cuccu---- ------(acc ngcgccccgg cgccg----- ---------- ---------- 2281 ---------- ----)|-|-| ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---|U|A|-- ---------g ggag|--AA| GGU|--CCA| GA-GACU-U| 2521 -GAC|GGG-G --G-UG|G|G UAggucc--- ---------- -(ucgc---- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 gggcccGCc- |UAA-GA-UA |AA-GUC|C| -|gu----g| -----|ccun cgc------- 2761 ----(-GAGA ---------- )--------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---------- ---------- 2881 --|------g cg--c-g-g- g|-------- --|-aaugcu ---------- -(cca----- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---------- ---------- 3121 ---------- ---------- ---------- ---------- ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ---------- ---------- ---------- ---------- ---------- ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- ---------a 4021 gca|------ --------|- ---------- ---------- ---------- ---------- 4081 ---------- ---------- ---------- ---------- ---------- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- ---------- ---------- ---------- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- --------ga gccccggaa| ------a|G- -||ggg---c ugcggc| // LOCUS Gra.e.1.1 4557 bp RNA RNA 28-JAN-191 DEFINITION Graphium eumorphum. ACCESSION No information KEYWORDS No information. SOURCE Graphium eumorphum. ORGANISM Graphium eumorphum. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 4557) Corresponding GenBank entry: AB007684 LOCUS AB007684 2126 bp DNA PLN 09-AUG-2000 DEFINITION Graphium eumorphum gene for 18S rRNA, partial sequence. ACCESSION AB007684 VERSION AB007684.1 GI:9757653 KEYWORDS 18S ribosomal RNA. SOURCE Graphium eumorphum (strain:JCM9748) DNA. ORGANISM Graphium eumorphum Eukaryota; Fungi; Ascomycota; Ophiostomatales; Ophiostomataceae; anamorphic Ophiostomataceae; Graphium. REFERENCE 1 (sites) AUTHORS Okada,G., Jacobs,K., Kirisits,T., Louis-Seize,G.W., Seifert,K.A., Sugita,T., Takematsu,A. and Wingfield,M.J. TITLE Epitypification of Graphium penicillioides Corda, with comments on the phylogeny and taxonomy of graphium-like synnematous fungi JOURNAL Stud. Mycol. 45, 169-188 (2000) REFERENCE 2 (bases 1 to 2126) AUTHORS Okada,G. and Takematsu,A. TITLE Direct Submission JOURNAL Submitted (28-SEP-1997) to the DDBJ/EMBL/GenBank databases. Gen Okada, The Institute of Physical and Chemical Research (RIKEN), Japan Collection of Microorganisms; Hirosawa 2-1, Wako, Saitama 351-0198, Japan (E-mail:okada@jcm.riken.go.jp, Tel:+81-48-462-1111(ex.5124), Fax:+81-48-462-4619) FEATURES Location/Qualifiers source 1..2126 /organism="Graphium eumorphum" /strain="JCM9748" /db_xref="taxon:67635" rRNA <1..>2126 /note="Corresponding partly to 24-1774nt positon of 18S rRNA S. cerevisiae: Acc#(M27607)" /product="18S rRNA" BASE COUNT 544 a 481 c 582 g 517 t 2 others BASE COUNT 103 a 107 c 128 g 64 t 4155 others ORIGIN 1 |caccaccag gggU||u--- -------(-- --aacgucua acuguuaagc cacagaagaa 61 aucu------ ---------- --)------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- ---------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 ---------- -----|Gcuc cu--|----- ---------g aa-|AGCC-- ---------- 781 -gccc(gaaa --)gg-gu-- ---------g ag-------- ------gugg uguccgga-c 841 gugcgagcuc gaauuuaaa- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 -------GGC U|--A----- -----|GUC- Cu-------- cc-------- ---------- 1021 ---aau---- ---------- ---------- ---------g c--------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 ---------- ---------- ---------- ---------- ---------- ---------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- ---------- ---------- ---------- 1561 ---------- ---------- ---------- ---------- ---------- ---------- 1621 --------GG --A--GGGC| --GA|CAUC- C-U-C|AAAU |UG--C-GGG |GAAC----| 1681 U-CC------ ---------- ---------- -|U------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- --------AA AG|------C 1801 U--------U UC-AC|U-CC A|-------- ---------- ---------- ---------- 1861 ---|AAG-C- CG-G-U-U-- -C-GC-(GAA A--------- ---------- ---------- 1921 ---------- -)-GCc--GC --C-G-G-U- G-G|----|c c-a-g-g-u- (uaaca---- 1981 ---------- --------)- gc-c-u-cg- g|-------G UA-C|UGG-A AAA-AC-G-- 2041 UGG-A-AG-| -a-------- -------ug- ---------- ---------- ---cg-a--- 2101 ---------- ---------- -ca------a u--------- ---------- ---------- 2161 ---------- ---------- ---------- --GGA--CAN A|UC-CGCA| GCC|-AAG-- 2221 |CCCC----- ------(--- ---------- ---------- ---------- ---------- 2281 ---------- ----)|-|u| aaa----ggc ucccc----- ---------- ---------- 2341 -g-ucg-ag- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---ggac-gc cc-|A|C|-- ---------- GGGG|--AA| GGU|--UCA| GA-GACU-U| 2521 -AAC|GGG-G --A-UG|G|G UAaucgcc-- ---------- -(gaga---- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------g 2701 gcgccUGCu- |UAA-GA-UA |AA-GUC|C| -|gg------ -----|nccu gcgc------ 2761 ----(-GAGA ---------- )--------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---------- ---------- 2881 --|-----gc gc--g-g-g- g|-------- --|-gua--- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---------- ---------- 3121 ---------- ---------- ---------- ---------- ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ---------- ---------- ---------- ---------- ---------- ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- ---------- 4021 ---------- ---------- ---------- ---------- ---------- ---------- 4081 ---------- ---------- ---------- ---------- ---------- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- ---------- ---------- ---------- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- --------g| -----ca|G- -||gga-a-c ugcggc| // LOCUS Gra.pu.1.1 4557 bp RNA RNA 30-MAR-1999 DEFINITION Graphium putredinis.. ACCESSION No information KEYWORDS No information. SOURCE Graphium putredinis. ORGANISM Graphium putredinis. REFERENCE 1 (sites) AUTHORS and Tubaki,K. Okada,G., Seifert,K.A., Takematsu,A., Yamaoka,Y., Miyazaki,S. TITLE based on 18S rDNA sequences A molecular phylogenetic reappraisal of the Graphium complex JOURNAL Can. J. Bot. 76, 1495-1506 (1998) STANDARD No information COMMENTS Organism information Culture collection: JCM 7866 Sequence information (bases 1 to 4557) Corresponding GenBank entry: AB007683 LOCUS AB007683 2126 bp DNA PLN 30-MAR-1999 DEFINITION Graphium putredinis gene for 18S rRNA, partial sequence, strain:JCM7866. ACCESSION AB007683 NID g4586364 VERSION AB007683.1 GI:4586364 KEYWORDS 18S ribosomal RNA. SOURCE Graphium putredinis (strain:JCM7866) DNA. ORGANISM Graphium putredinis Eukaryota; Fungi; Ascomycota; Euascomycetes; Pyrenomycetes; Microascales; Microascaceae; mitosporic Microascaceae; Graphium. REFERENCE 1 (sites) AUTHORS Okada,G., Seifert,K.A., Takematsu,A., Yamaoka,Y., Miyazaki,S. and Tubaki,K. TITLE A molecular phylogenetic reappraisal of the Graphium complex based on 18S rDNA sequences JOURNAL Can. J. Bot. 76, 1495-1506 (1998) REFERENCE 2 (bases 1 to 2126) AUTHORS Okada,G. and Takematsu,A. TITLE Direct Submission JOURNAL Submitted (28-SEP-1997) to the DDBJ/EMBL/GenBank databases. Gen Okada, The Institute of Physical and Chemical Research (RIKEN), Japan Collection of Microorganisms; Hirosawa 2-1, Wako, Saitama 351-0198, Japan (E-mail:okada@ulmus.riken.go.jp, Tel:+81-48-462-1111(ex.5124), Fax:+81-48-462-4619) COMMENT The sequence was determined by A. Takematsu. FEATURES Location/Qualifiers source 1..2126 /organism="Graphium putredinis" /strain="JCM7866" /db_xref="taxon:67633" rRNA join(<1..1140,1521..>2126) /note="Corresponding to 24-1774 nt positon of 18S rRNA S. cerevisiae: Acc#(M27607)" /product="18S rRNA" intron 1141..1520 /note="group I intron just after 1165 nt position in S. cerevisiae" BASE COUNT 547 a 479 c 582 g 514 t 4 others BASE COUNT 103 a 107 c 129 g 65 t 4153 others ORIGIN 1 |caccaccag gggU||u--- -------(-- --aacgucua acuguuaagc cacagaagaa 61 aucu------ ---------- --)------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- ---------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 -------|-- -----|Gcuc cu--|----- ---------g aa-|AGCC-- ---------- 781 -gccc(gaaa --)gg-gu-- --------(g ag-------- ------gugg uguccggagc 841 gugcgagcuc gaauuuaaa- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 -------GGC U|--A----- -----|GUC- C--------- uc-c------ ---------- 1021 --(aau---- ---------- ---------- ---------g c--------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 ---------- ---------- ---------- ---------- ---------- ---------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- ---------- -)-------- ---------- 1561 ---------- ---------- ---------- ---------- ---------- ---------- 1621 --------GG --A--GGGC| --GA|CAUC- C-U-C|AAAU |UG--C-GGG |GAAC----| 1681 U-CC------ ---------- ---------- -|U------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- --------AA AG|------C 1801 U--------U UA-AC|U-CC A|-------- ---------- ---------- ---------- 1861 ---|AAG-C- CG-G-U-U-- -C-GC-(GAA A--------- ---------- ---------- 1921 ---------- -)-GCc--GC --C-G-G-U- G-G|----|C C-A-G-G-U- (uaaca---- 1981 ---------- --------)- GC-C-U-cG- G|-------G UA-C|UGG-A AAA-AC-G-- 2041 UGG-A-AG-| -A-------- ------|ug- ---------- ---------- --(cg-a--- 2101 ----)----- ---------- -ca|-----a u|-------- ---------- ---------- 2161 ---------- ---------- ---------- --GGA|-CAA -|UC-CGCA| GCC|-AAG-- 2221 |CCCC----- ------(--- ---------- ---------- ---------- ---------- 2281 ---------- ----)|-|u| aaa---|ggc ucccc----- ---------- ---------- 2341 (g-ucg-ag- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- -------|-- 2461 ---ggac-gc cc-|A|C|-- ---------- GGGg|--AA| GGU|--UCA| GA-GACU-U| 2521 -AAC|GGG-G --A-UG|G|G UAuucgcc-- ---------- -(gaga---- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------g 2701 gcgccUGCU- |UAA-GA-UA |AA-GUC|C| -|gg-----| -----|cccu gcgc------ 2761 ----(-GAGA ---------- )--------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---------- ---------- 2881 --|-----gc gc--g-g-g- g|-------- --|-gua--- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---------- ---------- 3121 ---------- ---------- ---------- ---------- ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ---------- ---------- ---------- ---------- ---------- ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- ---------- 4021 ---------- ---------- ---------- ---------- ---------- ---------- 4081 ---------- ---------- ---------- ---------- ---------- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- ---------- ---------- ---------- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---gcag|.- -||gga-a-c ugcggc| // LOCUS Mon.a.1.1 4557 bp RNA RNA 23-JUN-1999 DEFINITION Monacrosporium arcuatum.. ACCESSION No information KEYWORDS No information. SOURCE Monacrosporium arcuatum. ORGANISM Monacrosporium arcuatum. REFERENCE 1 (sites) AUTHORS Scholler,M., Hagedorn,G. and Rubner,A. TITLE A reevaluation of predatory orbiliaceous fungi. II. A new generic concept JOURNAL Sydowia 51, 89-113 (1999) STANDARD No information COMMENTS Sequence information (bases 1 to 4557) Corresponding GenBank entry: AF106527 LOCUS AF106527 1629 bp DNA PLN 23-JUN-1999 DEFINITION Monacrosporium arcuatum 18S small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence. ACCESSION AF106527 NID g5139060 VERSION AF106527.1 GI:5139060 KEYWORDS . SOURCE Monacrosporium arcuatum. ORGANISM Monacrosporium arcuatum Eukaryota; Fungi; Ascomycota; mitosporic Ascomycota; Monacrosporium. REFERENCE 1 (bases 1 to 1629) AUTHORS Scholler,M., Hagedorn,G. and Rubner,A. TITLE A reevaluation of predatory orbiliaceous fungi. II. A new generic concept JOURNAL Sydowia 51, 89-113 (1999) REFERENCE 2 (bases 1 to 1629) AUTHORS Hagedorn,G. and Scholler,M. TITLE A reevaluation of predatory orbiliaceous fungi. I. Phylogenetic analysis using rDNA sequence data JOURNAL Sydowia 51, 27-48 (1999) REFERENCE 3 (bases 1 to 1629) AUTHORS Hagedorn,G. and Scholler,M. TITLE Direct Submission JOURNAL Submitted (13-NOV-1998) Institute for Plant Virology, Microbiology, and Biosafety, Federal Biological Research Centre for Agriculture and Forestry, Koenigin-Luise-Str. 19, Berlin 14195, Germany FEATURES Location/Qualifiers source 1..1629 /organism="Monacrosporium arcuatum" /strain="CBS 174.89" /note="directly sequenced PCR product, primer NS5-ITS4" /db_xref="taxon:97335" /tissue_type="mycelium" rRNA <1..1063 /product="18S small subunit ribosomal RNA" intron 16..431 misc_RNA 1064..1246 /product="internal transcribed spacer 1" rRNA 1247..1402 /product="5.8S ribosomal RNA" misc_RNA 1403..1597 /product="internal transcribed spacer 2" BASE COUNT 440 a 387 c 412 g 390 t BASE COUNT 122 a 109 c 124 g 86 t 4116 others ORIGIN 1 |caccaccag augU||a--- -------(-- --aa-ccgu- ---------- --aguuaacu 61 c--------- ---------- --)------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- ---------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 -------|-- ----u|Gcau c---|----- --------ac aa-|AGC--- ---------- 781 -cgcc(uccu --)gg-ag-- ---------u ug-------- ------acuc uccgggaagg 841 ucugaacacc ugugccgguu caaaagu--- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------GC U|--A----- -----|GUC- cg-------- ac-------- ---------- 1021 --(cgu---- ---------- ---------- ---------g aaaaa----- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 ---------- ---------- ---------- ---------- ---------- ---------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- ---------- -)-------- ---------- 1561 ---------- ---------- ---------- ---------- ---------- ---------- 1621 --------gu --c--GGGC| --GA|CACU- C-C-C|AAAU |UG--C-GGG |AAAC----| 1681 U-CC------ ---------- ---------- -|U------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- --------AA AG|------C 1801 UG------CU Ug-UA|C-AC C|-------- ---------- ---------- ---------- 1861 ---|AAG-U- UG-G-A---- -C-UG-(GCG A--------- ---------- ---------- 1921 ---------- -)-CAG--UC --C-A-A-U- G-G|----|C C-G-GCU-C- (gaaa----- 1981 ---------- --------)- GG-GAC-CG- G|-------G UA-A|GGU-A AUA-GC-U-- 2041 GA-AGCAG-| -A-------- ------|ug- ---------- ---------- --(--caa-- 2101 ----)----- ---------- -ca|-----a u|-------- ---------- ---------- 2161 ---------- ---------- ---------- --GGA|-UGA -|UC-CGCA| GCC|-AAG-- 2221 |CGACUGGU- ------(uau ugaga----- ---------- ---------- ---------- 2281 ---------- ----)|-|-| ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---|A|C|-- ------GCCA GUCG|--AA| GGU|--UCA| GA-GACU-A| 2521 -GAU|GGG-A --G-UG|G|G UUGuGCUU-- ---------- -(cucacuug aaagcgcuac 2581 gccuacaguu uugaauucaa gugacacgaa ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- --------aA 2701 AGCuCGGCU- |UGA-GG-UA |UA-GUC|C| -|Ag-----| cc---|gcgu ac-------- 2761 ----(-CAAA ---------- )--------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---------- ---------- 2881 --|------- gu--a-c-g- c|-------- --|-ggaac- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---------- ---------- 3121 ---------- ---------- ---------- ---------- ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ---------- ---------- ---------- ---------- ---------- ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- ---------- 4021 ---------- ---------- ---------- ---------- ---------- ---------- 4081 ---------- ---------- ---------- ---------- ---------- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- ---------- ---------- ---------- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---aggcaa| ------U|G- -||gga-gcc ugcggc| // LOCUS C1-S-1046 4557 bp RNA RNA ~?~???? DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 4557) Corresponding GenBank entry: DIVIDER BASE COUNT 0 a 0 c 0 g 0 t 4557 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- --------|- ---------- ---------- ---------- ---------- 301 ---------- ---------- -----|--|- ---------| |||||||||| |||~|..... 361 .......... .......... .......... .......... .......... .......... 421 .......... .......... .......... .......... .......... .......... 481 .......... .......... .......... .......... .......... .......... 541 .......... .......... .......... .......... .......... .......... 601 .......... .......... .......... .......... .......... .......... 661 .......... .......... .......... .......... .......... .......... 721 .......... .......... ....|..... .......... ..-....... .......... 781 .......... .......... .......... .......... .......... .......... 841 .......... .......... .......... .......... .......... .......... 901 .......... .......... .......... .......... .......... .......... 961 .......... ..--...... .......... .......... .......... .......... 1021 .......... .......... .......... .......... .......... .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .......... .......... .......... .......... .......... 1201 .......... .......... .......... .......... .......... .......... 1261 .......... .......... .......... .......... .......... .......... 1321 .......... .......... .......... .......... .......... .......... 1381 .......... .......... .......... .......... .......... .......... 1441 .......... .......... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... .......... .......... .......... .......... .......... 1621 .......... .......... .......... .......... ......-... ......---. 1681 ....------ ---------- ---------- -......... .......... .......... 1741 .......... .......... .......... .......... .......... .......... 1801 .......... .......... ...------- ---------- ---------- ---------- 1861 ---....... .......... .......... .......... .......... .......... 1921 .......... .......... .......... .......... .......-.. .......... 1981 .......... .......... .......... .|........ .......... .......... 2041 .......... -......... .......... .......... .......... .......... 2101 .......... ....-..... .......... .......... .......... .......... 2161 .......... .......... .......... .......... .......... ....-..... 2221 .......... ....--(... .......... .......... .......... .......... 2281 .......... ....)|.|.| .......... .......... .......... .......... 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......-.. .......|.- -......... .......... .......... .......... 2521 ........-. ...-...... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... -......... 2701 .........- .......... .......... .......... .......... .......... 2761 .......... .......--- .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... .......... 2881 .......... ..--...... .......... .......... .......... .......... 2941 .......... .......... .......... .......... .......... .......... 3001 .......... .......... .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .....--... 3121 .......... .......... .......... .......... .......... .......... 3181 .......... .......... .......... .......... .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .......... .......... .......... 3361 .......... .......... .......... .......... .......... .......... 3421 .......... .......... .......... .......... .......... .......... 3481 .......... .......... .......... .......... .......... .......... 3541 .......... .......... .......... .......... .......... .......... 3601 .......... .......... .......... .......... .......... .......... 3661 .......... .......... .......... .......... .......... .......... 3721 .......... .......... .......... .......... .......... .......... 3781 .......... .......... .......... .......... .......... .......... 3841 .......... .......... .......... .......... .......... .......... 3901 .......... .......... .......... .......... .......... .......... 3961 .......... .......... .......... .--....... .......... ...---.... 4021 ....---... .......... .......... .....----- ---------- ---------. 4081 .......... .......... .......... .......... .......... .......... 4141 .......... .......... .......... .......... .......... .......... 4201 .......... .......... .......... .......... .......... .......... 4261 .......... .......... .......... .......... .......... ......---- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 --------.. --........ .......... .........- -.....-... ......| // LOCUS Ank.s.1.1 4557 bp RNA RNA 13-JAN-1990 DEFINITION Ankistrodesmus stipitatus str. 202-5. ACCESSION No information KEYWORDS No information. SOURCE Ankistrodesmus stipitatus str. 202-5. ORGANISM Ankistrodesmus stipitatus. REFERENCE 1 (sites) AUTHORS Davila-Aponte J.A.;Huss V.A.R.;Sogin M.L.;Cech T.R. TITLE A self-splicing group I intron in the nuclear pre-rRNA JOURNAL Nuc. Acids Res. 19:4429-4436 STANDARD No information COMMENTS Sequence information (bases 1 to 4557) Corresponding GenBank entry: X56100 LOCUS ASRRN16L 2186 bp DNA PLN 22-JUN-1998 DEFINITION A. stipitatus 18S small subunit ribosomal RNA. ACCESSION X56100 NID g547552 VERSION X56100.1 GI:547552 KEYWORDS 16S ribosomal RNA; small subunit ribosomal RNA. SOURCE Ankistrodesmus stipitatus. ORGANISM Ankistrodesmus stipitatus Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Chlorococcales; Ankistrodesmus. REFERENCE 1 (bases 1 to 2186) AUTHORS Sogin,M.L. TITLE Direct Submission JOURNAL Submitted (24-SEP-1990) M.L. Sogin, Marine Biological Laboratory, Center for Molecular Evolution, Woods Hole, MA 02543, USA REMARK revised by [3] MAT REFERENCE 2 (bases 1 to 2186) AUTHORS Huss,V.A. and Sogin,M.L. TITLE Phylogenetic position of some Chlorella species within the chlorococcales based upon complete small-subunit ribosomal RNA sequences JOURNAL J. Mol. Evol. 31 (5), 432-442 (1990) MEDLINE 91087245 REFERENCE 3 (bases 1 to 2186) AUTHORS Sogin,M.L. TITLE Direct Submission JOURNAL Submitted (19-SEP-1994) M.L. Sogin, MARINE BIOLOGICAL LABORAORY, CENTER FOR MOLECULAR EVOLUTION, WOODS HOLE MA 02543, USA REFERENCE 4 (bases 1 to 2186) AUTHORS Davila-Aponte,J.A., Huss,V.A., Sogin,M.L. and Cech,T.R. TITLE A self-splicing group I intron in the nuclear pre-rRNA of the green alga, Ankistrodesmus stipitatus JOURNAL Nucleic Acids Res. 19 (16), 4429-4436 (1991) MEDLINE 91360342 COMMENT On Sep 23, 1994 this sequence version replaced gi:16118. See also X56099, X56100, X56101, X56102, X56103, X56104 and X56105. Ambiguity of nucleotides may be caused by PCR errors or by microheterogeneity within the 16s-like rRNA genes. FEATURES Location/Qualifiers source 1..2186 /organism="Ankistrodesmus stipitatus" /strain="SAG 202-5" /db_xref="taxon:3109" primer_bind 1..21 /note="PCR amplification 5'-primer" rRNA join(1..1262,1657..2186) /product="18S small subunit RNA" intron 1263..1656 /note="group I intron" primer_bind 2162..2186 /note="PCR amplification 3'-primer" BASE COUNT 556 a 478 c 606 g 546 t BASE COUNT 104 a 100 c 126 g 78 t 4149 others ORIGIN 1 |~~~~~~~au gggU||ga-- -------(-- --aagcacua ---------- ---------- 61 ---------- ---------- --)------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- ---------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 -------|-- ---uu|Gccc au--|----- ---------c au-|AGCAGc ugu------- 781 ---------- ---------- --------(c cacaaa---- ---------- ---------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ----gca-g- 961 ---uC--UGC U|--A----- -----|GUC- GU-------- cg-uugc--- -----a---- 1021 cc(gcu---- ---------- ---------- ---------u u--gcaa--- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 ---------- ---------- ---------- ---------- ---------- ---------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- ---------- -)-------- --g-gc---- 1561 ---------- ---------- ---------- ---------- ---------- ---------- 1621 ----gcaacg c-A--CGGC| --GA|GACC- G-U-C|GAAU |UG--C-GGG |GACA----| 1681 U-CC------ ---------- ---------- -|Uu------ ---------- ---------- 1741 ---------- ---------- ---------- ---------- --------AC AG|------C 1801 UC-------- AA-GC|U-AC C|-------- ---------- ---------- ---------- 1861 ---|AAC-U- UG-U-C---- -G-CA-(GAA A--------- ---------- ---------- 1921 ---------- -)-UGC-uGG --C-A-A-G- G-G|----|C C-GGG-G-U- (-aaug---- 1981 ---------- --------)- AC-C-C-AG- G|-------G UA-U|GGU-A AAA-AC-GC- 2041 UU--G-AG-| -Auu------ ------|--- ---------- ---------- ---------- 2101 ---------- ---------- ---------- -|-------- ---------- ---------- 2161 ---------- ---------- ---------- --GGA|-UAA -|UC-CGCA| GCC|-AAg-- 2221 |CACC----- ------(--- ---------- ---------- ---------- ---------- 2281 ---------- ----)|-|U| UA----|ccc ggau------ ---------- ---------- 2341 (u-caa-c-- ---------- ---------- ---------- ---------- ---------- 2401 -------)-- ---------- ---------- ---------- ---------- -------|-- 2461 ----guc-cg ga-|A|A|-- ---------- GGUG|--AA| GGU|--UCA| GA-GACU-A| 2521 -GGU|GGC-G --G-UC|G|G UCacg----- ---------- -(aga----- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------) ---------- 2701 --cguGGCU- |UAA-GA-UA |GA-GUC|C| -|GU-----| uc---|gcgc u--------- 2761 ----(-GAAA ---------- )--------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---------- ---------- 2881 --|------- -a--g-c-g- u|-------- --|-ucgucg gg-------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- -|----aaga aa-|gccuu- ----(----a 3121 gc-------- ---------- ---------- ---------- ---------- ---------- 3181 ---------- ---------- -----)---- a-aggc|--- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ---------- ---------- ---------- ---------- ---------- ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- --|--cgga- g--|------ ---------- --c---caga 4021 cga|------ ----a---|g ggua-gcca- ---------- ---------- ---------( 4081 uuau------ ---------- ---------- ---------- ---------- ---------- 4141 -)-------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- --------|- ------uggc u-gccu|--- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------| ---cgaggua c--------| -----AC|G- -||ggu-ggu gc~~~~| // LOCUS Chl.so.1.2 4557 bp RNA RNA 28-JAN-191 DEFINITION Chlorella sorokiniana. ACCESSION No information KEYWORDS No information. SOURCE Chlorella sorokiniana. ORGANISM Chlorella sorokiniana. REFERENCE 1 (sites) AUTHORS Huss V.A.R. JOURNAL Direct Submission STANDARD No information COMMENTS Sequence information (bases 1 to 4557) Corresponding GenBank entry: X73993 FT source 1..2689 FT /organism="Chlorella sorokiniana" FT /strain="SAG 211-40a" BASE COUNT 99 a 115 c 155 g 80 t 4108 others ORIGIN 1 |~~~~ucuau gggU||g--- -------(-- --aaaaguau ugcacuuac- ---------- 61 ---------- ---------- --)------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- ---------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 -------|-- ----u|Gccc au--|----- ---------g aa-|AGCAGc ccgucccgu- 781 ---------- ---------- --------(c guc------- ---------- ---------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---acggggc agagcgg-g- 961 ----C--UGC U|--A----- -----|GUC- AC-------- cg-ccgc--- -----a---- 1021 cc(gcu---- ---------- ---------- ---------a ucugcga--- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 ---------- ---------- ---------- ---------- ---------- ---------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- ---------- -)-------- --g-gu---- 1561 ---------- ---------- ---------- ---------- ---------- ---------- 1621 ----gcggcg --Gc-UGGC| --GA|GACC- G-U-C|GAAU |UG--C-GGG |GACA----| 1681 C-CC------ ---------- ---------- -|Uu------ ---------- ---------- 1741 ---------- ---------- ---------- ---------- --------AG AG|------C 1801 CU-------- GU-GU|C-AC C|-------- ---------- ---------- ---------- 1861 ---|AAC-C- CG-G-C---- -G-UG-(GAA A--------- ---------- ---------- 1921 ---------- -)-CAC-aGC --C-G-G-G- G-G|----|C C-GGG-G-U- (-aauu---- 1981 ---------- --------)- AC-C-U-AG- G|-------G UA-U|GGU-A AAA-GC-AC- 2041 AC--A-GG-| -Auu------ ------|--- ---------- ---------- ---------- 2101 ---------- ---------- ---------- -|-------- ---------- ---------- 2161 ---------- ---------- ---------- --GGG|-CUA -|UC-CGCA| GCC|-AAg-- 2221 |CUCC----- ------(--- ---------- ---------- ---------- ---------- 2281 ---------- ----)|-|U| AA----|ggg ccga------ ---------- ---------- 2341 (g-cga---- ---------- ---------- ---------- ---------- ---------- 2401 -------)-- ---------- ---------- ---------- ---------- -------|-- 2461 ----ucg-gc cu-|A|G|-- ---------- GGAG|--AA| GGU|--UCA| GA-GACU-A| 2521 -GGU|GGC-G --G-UC|G|G UUcccaa--- ---------- -(aguaucgc ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------) ---------- 2701 uugggGGCU- |UAA-GA-UA |GA-GUC|C| -|GA-----| ca---|cagc a--------- 2761 ----(-GAAA ---------- )--------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---------- ---------- 2881 --|------- -u--g-c-u- g|c------- --|-cucggg ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- -|----acga a--|uguuu- c---(---ga 3121 gca------- ---------- ---------- ---------- ---------- ---------- 3181 ---------- ---------- -----)---g a-aacg|--- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ---------- ---------- ---------- ---------- ---------- ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- --|---gga- g--|------ ---------- -------ucc 4021 ggg|------ --------|g gagg-ggga- ---------- ---------- ---------( 4081 acgcacaguu gc-------- ---------- ---------- ---------- ---------- 4141 -)-------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- --------|- ------uccc c-cuuu|--- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------| -----gagua g--------| -----UC|G- -||ggu-ggu gcaugg| // LOCUS Cho.sp.1.1 4557 bp RNA RNA 17-JAN-1998 DEFINITION Choricystis sp. subsp. Nannochloris sp. (?!?). ACCESSION No information KEYWORDS No information. SOURCE Choricystis sp. subsp. Nannochloris sp. (?!?). ORGANISM Choricystis sp. REFERENCE 1 (sites) AUTHORS Huss,V.A.R., Huemmer,C. and Kessler,E. JOURNAL Unpublished STANDARD No information COMMENTS Sequence information (bases 1 to 4557) Corresponding GenBank entry: X81965 LOCUS N18RNA 2214 bp DNA UNA 17-JAN-1998 DEFINITION Nannochloris sp. 18S rRNA gene. ACCESSION X81965 NID g2792014 KEYWORDS 18S rRNA gene; small subunit ribosomal RNA. SOURCE Choricystis sp. ORGANISM Choricystis sp. unclassified. REFERENCE 1 (bases 1 to 2214) AUTHORS Huss,V.A.R., Huemmer,C. and Kessler,E. JOURNAL Unpublished REFERENCE 2 (bases 1 to 2214) AUTHORS Huss,V.A.R. TITLE Direct Submission JOURNAL Submitted (28-SEP-1994) V.A.R. Huss, Institut fuer Botanik & Pharmazeutische Biologie, Universitaet Erlangen, Staudtstr. 5, 91058 Erlangen, FRG FEATURES Location/Qualifiers source 1..2214 /organism="Choricystis sp." /strain="SAG 251-2" rRNA join(1..1266,1683..2214) /gene="18S rRNA" /product="18S small subunit ribosomal RNA" gene 1..2214 /gene="18S rRNA" exon 1..1266 /gene="18S rRNA" /number=1 primer_bind 1..21 /gene="18S rRNA" intron 1267..1682 /gene="18S rRNA" /note="group I intron" /number=1 exon 1683..2214 /gene="18S rRNA" /number=2 primer_bind complement(2190..2214) /gene="18S rRNA" BASE COUNT 540 a 502 c 636 g 536 t BASE COUNT 96 a 113 c 148 g 84 t 4116 others ORIGIN 1 |ugauucuau gggU||---- -------(-- --uau-guac uau------- ---------- 61 ---------- ---------- --)------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- ---------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 ---------- ----u|Gccc au--|----- ---------g ag-|AGCGAg cggc------ 781 ---------- ---------- --------(g aga------- ---------- ---------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---gucg-c- 961 --uau--CGC U|--A----- -----|GCC- GUgc------ cu-gagc--- -----g---- 1021 cc-gcu---- ---------- ---------- ---------a uuugcga--- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 ---------- ---------- ---------- ---------- ---------- ---------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- ---------- ---------- --g-gc---- 1561 ---------- ---------- ---------- ---------- ---------- ---------- 1621 -----cucag u-gu-CGGC| --GA|GACC- A-U-C|GAAU |UG--C-GGG |AACG----| 1681 C-CC------ ---------- ---------- -|Ug------ ---------- ---------- 1741 ---------- ---------- ---------- ---------- --------AG AG|------C 1801 CU-------G UC-GC|U-AC C|-------- ---------- ---------- ---------- 1861 ---|AAA-C- CG-G-C---- -G-CG-(GAA A--------- ---------- ---------- 1921 ---------- -)-cgcgauc --C-G-G-U- G-G|----|C C-CGG-ACU- (-aacg---- 1981 ---------- --------)- AU-C-C-GG- G|-------G UA-U|GGU-A AAA-AC-GC- 2041 GAC-A-GG-| -Auu------ ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- --GGG|-CCA -|UC-CGCA| GCC|-AAg-- 2221 |CUCC----- ------(--- ---------- ---------- ---------- ---------- 2281 ---------- ----)|-|u| gg-----cga cag------- ---------- ---------- 2341 (c-gcu-gc- ---------- ---------- ---------- ---------- ---------- 2401 -------)-- ---------- ---------- ---------- ---------- -------|-- 2461 -----cu-gu cg-|a|c|-- ---------- GGAG|--AA| GGU|--UCA| GA-GACU-A| 2521 -AGU|GGU-G --G-UC|G|G UCcccuuuu- ---------- -(cgug---- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- --------aa 2701 aagggGGCU- |UAA-GA-UA |GA-GUC|C| -|GU-----| c----|cgca cc-------- 2761 ----(-GAGA ---------- )--------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---------- ---------- 2881 ---------- gg--u-g-u- g|-------- --|-cucgag ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- -|----auga aa-|gcucc- c---(--cca 3121 gca------- ---------- ---------- ---------- ---------- ---------- 3181 ---------- ---------- -----)---g g-gagc|--- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ---------- ---------- ---------- ---------- ---------- ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- --|--cgga- g--|------ ---------- -------uuc 4021 gag|------ --------|c aggaaaguug gc-------- ---------- ---------( 4081 aaau------ ---------- ---------- ---------- ---------- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- ---------- ---gccaacu u-ucug|--- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------| ----ggaguu c--------| -----AC|G- -||ggu-ggu gcaugg| // LOCUS Cho.m.1.1 4557 bp RNA RNA 27-JUN-1995 DEFINITION Choricystis minor subsp. was Nannochloris coccoides. ACCESSION No information KEYWORDS No information. SOURCE Choricystis minor subsp. was Nannochloris coccoides. ORGANISM Choricystis minor. REFERENCE 1 (sites) AUTHORS Huss,V.A.R. TITLE Direct Submission JOURNAL .A.R. Huss, Inst.f. Botanik und Pharmazeut. Biologie, Univ. Erlangen, Staudtstr. 5, D- 91058 Erlangen, FRG Submitted (22-JUN-1995) to the EMBL/GenBank/DDBJ databases. V STANDARD No information COMMENTS Sequence information (bases 1 to 4557) Corresponding GenBank entry: X89012 LOCUS CMDNA18SR 2652 bp DNA PLN 10-OCT-1996 DEFINITION C.minor DNA for 18S rRNA. ACCESSION X89012 NID g887416 VERSION X89012.1 GI:887416 KEYWORDS 18S rRNA; ribosomal RNA. SOURCE Choricystis minor. ORGANISM Choricystis minor Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Oocystaceae; Choricystis. REFERENCE 1 (bases 1 to 2652) AUTHORS Huss,V.A.R. TITLE Direct Submission JOURNAL Submitted (22-JUN-1995) V.A.R. Huss, Institut fuer Botanik und Pharmazeutische Biologie, Universitaet Erlangen, Staudtstr. 5, D- 91058 Erlangen, FRG REFERENCE 2 (bases 1 to 2652) AUTHORS Krienitz,L., Huss,V.A.R. and Huemmer,C. TITLE Picoplanktonic Choricystis-species (Chlorococcales, Chlorophyta) and the misconception of 'Nannochloris-like algae' JOURNAL Phycologia 35, 332-341 (1996) FEATURES Location/Qualifiers source 1..2652 /organism="Choricystis minor" /strain="SAG 251-1" /db_xref="taxon:41300" /note="=Nannochloris coccoides" exon 1..1265 /number=1 primer_bind 1..21 mRNA join(1..1265,1675..2182,2630..2652) /product="18S ribosomal RNA" intron 1266..1674 /number=1 exon 1675..2182 /number=2 intron 2183..2629 /number=2 primer_bind 2630..2652 exon 2630..2652 /number=3 BASE COUNT 642 a 619 c 786 g 605 t BASE COUNT 90 a 109 c 157 g 78 t 4123 others ORIGIN 1 |ugauucuau gggU||---- -------(-- --uauagcac uauu------ ---------- 61 ---------- ---------- --)------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- ---------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 ---------- -----|Gccc au--|----- ---------g aa-|AGCGGc ucgccccucu 781 ---------- ---------- --------(g uug------- ---------- ---------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- --ggggggac agagcga-g- 961 ----U--CGC U|--A----- -----|GUC- GC-------- cg-cacc--- -----g---- 1021 cc(gcu---- ---------- ---------- ---------a uuugcga--- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 ---------- ---------- ---------- ---------- ---------- ---------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- ---------- -)-------- --g-gc---- 1561 ---------- ---------- ---------- ---------- ---------- ---------- 1621 ----ggugcg a-Gu-CGGC| --AA|GACC- G-U-C|GAAC |UG--C-GGG |GACA----| 1681 U-CC------ ---------- ---------- -|Ug------ ---------- ---------- 1741 ---------- ---------- ---------- ---------- --------AG AG|------C 1801 UC-------- AA-GC|U-AC C|-------- ---------- ---------- ---------- 1861 ---|AAG-C- CG-C-U---- -G-CC-(GAA A--------- ---------- ---------- 1921 ---------- -)-GGC-gAG --C-G-G-U- G-G|----|C C-GGG-G-U- (-aacg---- 1981 ---------- --------)- AC-C-U-AG- G|-------G UA-U|GGU-A AAA-AC-GC- 2041 UU--G-AG-| -Auu------ ------|--- ---------- ---------- ---------- 2101 ---------- ---------- ---------- -|-------- ---------- ---------- 2161 ---------- ---------- ---------- --GGA|-CUA -|UC-CGCA| GCC|-AAg-- 2221 |CUCC----- ------(--- ---------- ---------- ---------- ---------- 2281 ---------- ----)|-|C| gac---|cgg ---------- ---------- ---------- 2341 (c-cug-cg- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- -------|-- 2461 ---------c cg-|A|G|-- ---------- GGAG|--AA| GGU|--UCA| GA-GACU-A| 2521 -GGU|GGC-G --G-UC|G|G UCc------- ---------- -(gcgagg-- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ----gGGCU- |UAA-GA-UA |GA-GUC|C| -|GU-----| c----|cgcg cc-------- 2761 ----(-GAGA ---------- )--------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---------- ---------- 2881 --|------- gg--c-g-u- g|-------- --|-cucaga ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- -|----agga ag-|gccgu- ----(----a 3121 gca------- ---------- ---------- ---------- ---------- ---------- 3181 ---------- ---------- -----)---- a-cggc|--- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ---------- ---------- ---------- ---------- ---------- ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- --|--agga- g--|------ ---------- -------ucu 4021 gag|------ --------|c gggg------ ---------- ---------- ---------( 4081 cgaaacaugu aguugu---- ---------- ---------- ---------- ---------- 4141 -)-------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- --------|- ---------- u-uucg|--- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 --------cu --cuggaguu c--------| -----AC|G- -||ggu-ggu gcaugg| // LOCUS Ple.p.1.2 4557 bp RNA RNA 09-JAN-1994 DEFINITION Pleurastrum paucicellulare SAG 463-1. ACCESSION No information KEYWORDS No information. SOURCE Pleurastrum paucicellulare SAG 463-1. ORGANISM Pleurastrum paucicellulare SAG 463-1. REFERENCE 1 (sites) AUTHORS Debashish JOURNAL No information STANDARD No information COMMENTS Sequence information (bases 1 to 4557) Corresponding GenBank entry: Z47997 BASE COUNT 106 a 113 c 144 g 84 t 4110 others ORIGIN 1 |~gauucugu gggU||g--- -------(-- --aacggugu ccgugacacu ac-------- 61 ---------- ---------- --)------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- ---------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 -------|-- ----u|Gccc ----|----- ---------- -c-|AGCGGg u--------- 781 ---------- ---------- --------(g aaa------- ---------- ---------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ------g-c- 961 ----CuaCGC U|--A----- -----|GUC- GU-------- cc-uu----- ---------- 1021 --(gcu---- ---------- ---------- ---------c gacccaaauu gcuauagca- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 ---------- ---------- ---------- ---------- ---------- ---------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- ---------- -)-------- ---------- 1561 ---------- ---------- ---------- ---------- ---------- ---------- 1621 ------aggg --Aa-CGGC| --GA|GACC- A-U-C|GAAU |UG--C-GGG |AACC----| 1681 C-CC------ ---------- ---------- -|U------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- --------AA AG|------C 1801 UU-------- GC-AC|C-AC C|-------- ---------- ---------- ---------- 1861 ---|AAG-G- CA-U-G---- -C-GG-(GAA A--------- ---------- ---------- 1921 ---------- -)-CCG-aCA --U-G-C-U- G-G|----|C C-AGG-G-U- (-aaug---- 1981 ---------- --------)- AC-C-U-CG- G|-------G UA-C|GGU-A AAA-GC-GU- 2041 GC--A-AG-| -Augcaaca- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------a u|-------- ---------- ---------- 2161 ---------- ---------- ---------- --GGG|-CAA -|UC-CGCA| GCC|-AAg-- 2221 |CGCC----- ------(--- ---------- ---------- ---------- ---------- 2281 ---------- ----)|-|C| uaa---|cag ---------- ---------- ---------- 2341 (g-uaa-ug- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- -------|-- 2461 ---------c ug-|A|G|-- ---------- GGUG|--AA| GGU|--UCA| GA-GACU-A| 2521 -AGU|GGU-G --G-UC|G|G UGccgg---- ---------- -(agccugug ugcc------ 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 -ccggUGCU- |UAA-GA-UA |UA-GUC|C| g|GC-----| a----|cuac g--------- 2761 ----(-GAAA ---------- )--------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---------- ---------- 2881 --|------- -c--g-u-a- g|-------- --|-ccacga g--------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- -|----agga aa-|ggc--- ----(---ca 3121 gcagc----- ---------- ---------- ---------- ---------- ---------- 3181 ---------- ---------- -----)---- ---gcc|--- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ---------- ---------- ---------- ---------- ---------- ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- --|--cgga- g--|------ ---------- ------cucg 4021 ugg|------ --------|- ---------- ---------- ---------- ---------- 4081 aggcugucgg ugcuccgcuc accggganug ugacuaaucg augugauuuu ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- ---------- ---------- ---------- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------| -----GU|G- -||ggu-ggu gcau~~| // LOCUS Neo.d.1.2 4557 bp RNA RNA 28-JAN-191 DEFINITION Neodesmus danubialis. ACCESSION No information KEYWORDS No information. SOURCE Neodesmus danubialis. ORGANISM Neodesmus danubialis. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 4557) Corresponding GenBank entry: AB037086 LOCUS AB037086 2599 bp DNA PLN 18-JUL-2000 DEFINITION Neodesmus danubialis gene for 18S rRNA, complete sequence. ACCESSION AB037086 VERSION AB037086.1 GI:9279818 KEYWORDS 18S ribosomal RNA. SOURCE Neodesmus danubialis (strain:SAG 17.81) DNA. ORGANISM Neodesmus danubialis Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Chlorococcales; Scenedesmaceae; Neodesmus. REFERENCE 1 (sites) AUTHORS Hegewald,E. and Hanagata,N. TITLE Phylogenetic studies on Scenedesmaceae JOURNAL Unpublished (2000) REFERENCE 2 (bases 1 to 2599) AUTHORS Hanagata,N. TITLE Direct Submission JOURNAL Submitted (14-JAN-2000) to the DDBJ/EMBL/GenBank databases. Nobutaka Hanagata, The University of Tokyo, Research Center for Advanced Science and Technology; 4-6-1 Komaba, Meguro-ku, Tokyo 153-8904, Japan (E-mail:hanagata@bio.rcast.u-tokyo.ac.jp, Tel:81-3-5452-5320, Fax:81-3-5452-5320) FEATURES Location/Qualifiers source 1..2599 /organism="Neodesmus danubialis" /strain="SAG 17.81" /db_xref="taxon:113524" rRNA 1..2599 /product="18S rRNA" BASE COUNT 709 a 543 c 697 g 650 t BASE COUNT 128 a 89 c 124 g 101 t 4115 others ORIGIN 1 |ugauucuau gggU||---- -------(-- --uaaaguga augcacuauu gcccuauaaa 61 guagac---- ---------- --)------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- ---------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 ---------- ----u|Gccc g---|aguua aucgccggac aa-|agcag- ---------- 781 ---------- ---------- ---------- ---------- ---------- ---------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---u------ ---------- 961 ----c--UGC U|--A----- -----|GUC- UC-------- au-ggac--- -----u---- 1021 uu(gcu---- ---------- ---------- ---------a uuuggcaa-- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 ---------- ---------- ---------- ---------- ---------- ---------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- ---------- -)-------- --a-aa---- 1561 ---------- ---------- ---------- ---------- ---------- ---------- 1621 ----gucaau u-G--AGGC| --AA|GACC- G-U-C|GAAU |UG--C-GGG |GACA----| 1681 C-CC------ ---------- ---------- -|Uuu----- ---------- ---------- 1741 ---------- ---------- ---------- ---------- --------AC AG|------C 1801 CU-------- GU-AC|U-AC C|-------- ---------- ---------- ---------- 1861 ---|AAC-U- UG-G-U---- -G-UG-(GAA A--------- ---------- ---------- 1921 ---------- -)-CAC-gAC --C-A-A-G- G-G|----|C C-GGG-U-U- (-aaug---- 1981 ---------- --------)- AC-C-UAAG- G|-------G UA-U|GGU-A AAA-AC-GU- 2041 AC--A-GG-| -Auu------ ------|--- ---------- ---------- ---------- 2101 ---------- ---------- ---------- -|-------- ---------- ---------- 2161 ---------- ---------- ---------- --GGG|-CAA -|UC-CGCA| GCC|-AAg-- 2221 |CUCC----- ------(--- ---------- ---------- ---------- ---------- 2281 ---------- ----)|-|C| uaa---|cag ---------- ---------- ---------- 2341 (g-uaa-ug- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------c ug-|A|G|-- ---------- GGAG|--AA| GGU|--UCA| GA-GACU-A| 2521 -AGU|GGU-G --G-UC|G|G Ucccuu---- ---------- -(guaa---- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 -aagggauU- |UAA-GA-UA |GA-GUC|C| -|GA-----| ca---|cugc c--------- 2761 ----(-GAAA ---------- )--------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---------- ---------- 2881 --|------- -g--g-c-aa g|-------- --|-ccccaa g--------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- -|----aaga a--|agcuu- ----(---ua 3121 gcc------- ---------- ---------- ---------- ---------- ---------- 3181 ---------- ---------- -----)---- g-agcu|--- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ---------- ---------- ---------- ---------- ---------- ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- --|---gga- g--|------ ---------- ------cuug 4021 ggg|------ --------|a guga-uuuug a--------- ---------- ---------( 4081 auac------ ---------- ---------- ---------- ---------- ---------- 4141 -)-------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- ---------- ----ucaaau u-cacu|--- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------| -----ugaga a--------| -----UC|G- -||ggu-ggu gcaugg| // LOCUS C1-S-1052 4557 bp RNA RNA ~?~???? DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 4557) Corresponding GenBank entry: DIVIDER BASE COUNT 0 a 0 c 0 g 0 t 4557 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- --------|- ---------- ---------- ---------- ---------- 301 ---------- ---------- -----|--|- ---------| |||||||||| |||~|..... 361 .......... .......... .......... .......... .......... .......... 421 .......... .......... .......... .......... .......... .......... 481 .......... .......... .......... .......... .......... .......... 541 .......... .......... .......... .......... .......... .......... 601 .......... .......... .......... .......... .......... .......... 661 .......... .......... .......... .......... .......... .......... 721 .......... .......... ....|..... .......... ..-....... .......... 781 .......... .......... .......... .......... .......... .......... 841 .......... .......... .......... .......... .......... .......... 901 .......... .......... .......... .......... .......... .......... 961 .......... ..--...... .......... .......... .......... .......... 1021 .......... .......... .......... .......... .......... .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .......... .......... .......... .......... .......... 1201 .......... .......... .......... .......... .......... .......... 1261 .......... .......... .......... .......... .......... .......... 1321 .......... .......... .......... .......... .......... .......... 1381 .......... .......... .......... .......... .......... .......... 1441 .......... .......... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... .......... .......... .......... .......... .......... 1621 .......... .......... .......... .......... ......-... ......---. 1681 ....------ ---------- ---------- -......... .......... .......... 1741 .......... .......... .......... .......... .......... .......... 1801 .......... .......... ...------- ---------- ---------- ---------- 1861 ---....... .......... .......... .......... .......... .......... 1921 .......... .......... .......... .......... .......-.. .......... 1981 .......... .......... .......... .|........ .......... .......... 2041 .......... -......... .......... .......... .......... .......... 2101 .......... ....-..... .......... .......... .......... .......... 2161 .......... .......... .......... .......... .......... ....-..... 2221 .......... ....--(... .......... .......... .......... .......... 2281 .......... ....)|.|.| .......... .......... .......... .......... 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......-.. .......|.- -......... .......... .......... .......... 2521 ........-. ...-...... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... -......... 2701 .........- .......... .......... .......... .......... .......... 2761 .......... .......--- .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... .......... 2881 .......... ..--...... .......... .......... .......... .......... 2941 .......... .......... .......... .......... .......... .......... 3001 .......... .......... .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .....--... 3121 .......... .......... .......... .......... .......... .......... 3181 .......... .......... .......... .......... .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .......... .......... .......... 3361 .......... .......... .......... .......... .......... .......... 3421 .......... .......... .......... .......... .......... .......... 3481 .......... .......... .......... .......... .......... .......... 3541 .......... .......... .......... .......... .......... .......... 3601 .......... .......... .......... .......... .......... .......... 3661 .......... .......... .......... .......... .......... .......... 3721 .......... .......... .......... .......... .......... .......... 3781 .......... .......... .......... .......... .......... .......... 3841 .......... .......... .......... .......... .......... .......... 3901 .......... .......... .......... .......... .......... .......... 3961 .......... .......... .......... .--....... .......... ...---.... 4021 ....---... .......... .......... .....----- ---------- ---------. 4081 .......... .......... .......... .......... .......... .......... 4141 .......... .......... .......... .......... .......... .......... 4201 .......... .......... .......... .......... .......... .......... 4261 .......... .......... .......... .......... .......... ......---- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 --------.. --........ .......... .........- -.....-... ......| // LOCUS Chl.l.2.2 4557 bp RNA RNA 28-JAN-191 DEFINITION Chlorella luteoviridis (B). ACCESSION No information KEYWORDS No information. SOURCE Chlorella luteoviridis (B). ORGANISM Chlorella luteoviridis (B). REFERENCE 1 (sites) AUTHORS Huss V.A.R. TITLE Direct Submission JOURNAL No information STANDARD No information COMMENTS Sequence information (bases 1 to 4557) Corresponding GenBank entry: X73998 FH Key Location/Qualifiers FH FT rRNA join(1..563,912..1622,2044..2569) FT /note="18S small subunit" FT primer_bind complement(2545..2569) FT /note="PCR amplification 3'-primer" FT primer_bind 1..21 FT /note="PCR amplification 5'-primer" FT exon 1..563 FT /number=1 FT source 1..2569 FT /organism="Chlorella luteoviridis" FT /strain="SAG 211-2a" FT /clone="B" FT intron 564..911 FT /number=1 FT /note="group I intron" FT exon 912..1622 FT /number=2 FT intron 1623..2043 FT /number=2 FT /note="group I intron" FT exon 2044..2569 FT /number=3 XX SQ Sequence 2569 BP; 614 A; 612 C; 747 G; 595 T; 1 other; BASE COUNT 93 a 116 c 143 g 96 t 4109 others ORIGIN 1 |uucuguggg uggu||g--- ---------- --gucgagaa acuucgguug ugugccacgc 61 ugcgagccug cgagaucuac uguuaaacuc cg-------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- ---------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 -------|-- ----u|Gccg cc--|----- ---------- -c-|AGCacg ---------- 781 ---------- ---------- ---------- --cgag---g ggucucgaca ac-------- 841 --ggs----- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 -----ugcGC U|--A----- -----|GUC- CA-------- uc-u------ ---------- 1021 --(gcu---- ---------- ---------- ---------a ugugagca-- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 ---------- ---------- ---------- ---------- ---------- ---------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- ---------- -)-------- ---------- 1561 ---------- ---------- ---------- ---------- ---------- ---------- 1621 -------ggg --U--GGGC| --GA|CACC- G-U-C|AAAU |UG--C-GGG |GAUC----| 1681 U-CC------ ---------- ---------- -|U------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- --------AU AG|------C 1801 UC-------- AU-CG|U-AC C|-------- ---------- ---------- ---------- 1861 --c|GCu-C- AG-C-G---- -C-UC-(GAA A--------- ---------- ---------- 1921 ---------- -)-GGG--CG --C-U-G-u- G-C|------ ---------- ---------- 1981 ---------- ---------- ---------- -|-------u ca-A|GGU-A ACA-AU-CG- 2041 GU--G-AG-| -A-------- ------|ug- ---------- ---------- --(cg-a--- 2101 ----)----- ---------- -ca|-----a u|-------- ---------- ---------- 2161 ---------- ---------- ---------- --GGA|-CAA -|UC-CGCA| GCC|-GG--- 2221 |GUCC----- ------(--- ---------- ---------- ---------- ---------- 2281 ---------- ----)|-|U| AA----|gcu c--------- ---------- ---------- 2341 (u-ucg-cc- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- -------|-- 2461 --------gg gu-|A|U|-- ---------- GGAU|cauc| GGU|--UCA| CA-GACU-A| 2521 -GAU|GUC-G --G-UG|G|G UCauu----- ---------- -(aucgaa-- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------) ---------- 2701 --aauGGCU- |UAA-GG-UA |UA-GUC|G| -|GA-----| cca--|caug g--------- 2761 ----(-GAGA ---------- )--------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---------- ---------- 2881 --|------- -c--c-a-u- g|-------- -a|-uguggu g--------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- -|----aaua a--|ggaga- u---(--acc 3121 ---------- ---------- ---------- ---------- ---------- ---------- 3181 ---------- ---------- -----)---a u-cucc|--- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ---------- ---------- ---------- ---------- ---------- ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- --|--ccga- g--|------ ---------- ------cgcc 4021 acg|------ --------|g ugcg-cuc-- ---------- ---------- ---------( 4081 aguc------ ---------- ---------- ---------- ---------- ---------- 4141 -)-------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- --------|- -----gagcg g-gcac|--- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------| -----ggguc gg-------| -----UC|G- -||gca-ugg ccguuc| // LOCUS C1-S-1062 4557 bp RNA RNA ~?~???? DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 4557) Corresponding GenBank entry: DIVIDER BASE COUNT 0 a 0 c 0 g 0 t 4557 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- --------|- ---------- ---------- ---------- ---------- 301 ---------- ---------- -----|--|- ---------| |||||||||| |||~|..... 361 .......... .......... .......... .......... .......... .......... 421 .......... .......... .......... .......... .......... .......... 481 .......... .......... .......... .......... .......... .......... 541 .......... .......... .......... .......... .......... .......... 601 .......... .......... .......... .......... .......... .......... 661 .......... .......... .......... .......... .......... .......... 721 .......... .......... ....|..... .......... ..-....... .......... 781 .......... .......... .......... .......... .......... .......... 841 .......... .......... .......... .......... .......... .......... 901 .......... .......... .......... .......... .......... .......... 961 .......... ..--...... .......... .......... .......... .......... 1021 .......... .......... .......... .......... .......... .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .......... .......... .......... .......... .......... 1201 .......... .......... .......... .......... .......... .......... 1261 .......... .......... .......... .......... .......... .......... 1321 .......... .......... .......... .......... .......... .......... 1381 .......... .......... .......... .......... .......... .......... 1441 .......... .......... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... .......... .......... .......... .......... .......... 1621 .......... .......... .......... .......... ......-... ......---. 1681 ....------ ---------- ---------- -......... .......... .......... 1741 .......... .......... .......... .......... .......... .......... 1801 .......... .......... ...------- ---------- ---------- ---------- 1861 ---....... .......... .......... .......... .......... .......... 1921 .......... .......... .......... .......... .......-.. .......... 1981 .......... .......... .......... .|........ .......... .......... 2041 .......... -......... .......... .......... .......... .......... 2101 .......... ....-..... .......... .......... .......... .......... 2161 .......... .......... .......... .......... .......... ....-..... 2221 .......... ....--(... .......... .......... .......... .......... 2281 .......... ....)|.|.| .......... .......... .......... .......... 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......-.. .......|.- -......... .......... .......... .......... 2521 ........-. ...-...... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... -......... 2701 .........- .......... .......... .......... .......... .......... 2761 .......... .......--- .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... .......... 2881 .......... ..--...... .......... .......... .......... .......... 2941 .......... .......... .......... .......... .......... .......... 3001 .......... .......... .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .....--... 3121 .......... .......... .......... .......... .......... .......... 3181 .......... .......... .......... .......... .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .......... .......... .......... 3361 .......... .......... .......... .......... .......... .......... 3421 .......... .......... .......... .......... .......... .......... 3481 .......... .......... .......... .......... .......... .......... 3541 .......... .......... .......... .......... .......... .......... 3601 .......... .......... .......... .......... .......... .......... 3661 .......... .......... .......... .......... .......... .......... 3721 .......... .......... .......... .......... .......... .......... 3781 .......... .......... .......... .......... .......... .......... 3841 .......... .......... .......... .......... .......... .......... 3901 .......... .......... .......... .......... .......... .......... 3961 .......... .......... .......... .--....... .......... ...---.... 4021 ....---... .......... .......... .....----- ---------- ---------. 4081 .......... .......... .......... .......... .......... .......... 4141 .......... .......... .......... .......... .......... .......... 4201 .......... .......... .......... .......... .......... .......... 4261 .......... .......... .......... .......... .......... ......---- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 --------.. --........ .......... .........- -.....-... ......| // LOCUS Mac.h.1.1 4557 bp RNA RNA 02-JAN-1999 DEFINITION Macropharyngomonas halophila.. ACCESSION No information KEYWORDS No information. SOURCE Macropharyngomonas halophila. ORGANISM Macropharyngomonas halophila. REFERENCE 1 (sites) AUTHORS Sogin,M.L. Silberman,J.D., Roger,A.J., Nerad,T.A., Gunderson,J.H. and TITLE (amoebae-flagellates) as revealed by nuclear 16S-like gene analyses Phylogenetic diversity of the Heteroloboseans JOURNAL Unpublished STANDARD No information COMMENTS Sequence information (bases 1 to 4557) Corresponding GenBank entry: AF011465 LOCUS AF011465 2962 bp rRNA INV 02-JAN-1999 DEFINITION Macropharyngomonas halophila 16S-like ribosomal RNA gene, complete sequence. ACCESSION AF011465 NID g4102254 KEYWORDS . SOURCE Macropharyngomonas halophila. ORGANISM Macropharyngomonas halophila Eukaryotae; mitochondrial eukaryotes; Heterolobosea; Macropharyngomonas. REFERENCE 1 (bases 1 to 2962) AUTHORS Silberman,J.D., Roger,A.J., Nerad,T.A., Gunderson,J.H. and Sogin,M.L. TITLE Phylogenetic diversity of the Heteroloboseans (amoebae-flagellates) as revealed by nuclear 16S-like gene analyses JOURNAL Unpublished REFERENCE 2 (bases 1 to 2962) AUTHORS Silberman,J.D., Roger,A.J., Nerad,T.A., Gunderson,J.H. and Sogin,M.L. TITLE Direct Submission JOURNAL Submitted (30-JUN-1997) Bay Paul Center for Comparative Molecular Biology and Evolution, Marine Biological Laboratory, 7 MBL St., Woods Hole, MA 02543, USA FEATURES Location/Qualifiers source 1..2962 /organism="Macropharyngomonas halophila" /strain="ATCC 50621; ATCC 50622" /db_xref="taxon:63601" /db_xref="ATCC:50621" /db_xref="ATCC:50622" rRNA join(1..1562,1942..2156,2517..2962) /product="16S-like ribosomal RNA" intron 1563..1941 /note="group I intron" intron 2157..2516 /note="group I intron" BASE COUNT 826 a 598 c 747 g 790 t 1 others BASE COUNT 112 a 85 c 123 g 94 t 4143 others ORIGIN 1 |ugugguugg uggU||g--- -------(-- --cauggccg uauacuaagu g--------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- ---------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 ---------- ---cg|Guug c---|----- ---------a ag-|UGUAA- ---------- 781 ---------- ---------- --------(a gcac------ ---------- ---------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 ------UUGC A|--A----- -----|GUG- Gc-------- uc-u------ -------gua 1021 cc(guu---- ---------- ---------- ---------a uaggguga-- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 ---------- ---------- ---------- ---------- ---------- ---------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- ---------- -)-------- -gg-ua---- 1561 ---------- ---------- ---------- ---------- ---------- ---------- 1621 ----caagaa a-G--CCGC| --GA|CACU- G-U-C|AAAU |UG--C-GGG |GAAC----| 1681 A-CC------ ---------- ---------- -|Ug------ ---------- ---------- 1741 ---------- ---------- ---------- ---------- --------uu ag|-----gG 1801 UU-------- AC-AG|U-AC C|-------- ---------- ---------- ---------- 1861 ---|GCC-C- UU-G-C---- -G-CC-(GAA A--------- ---------- ---------- 1921 ---------- ---GCCagGC --A-A-GaG- G-C|---a|C C-UCA-G-G- (-gaaa---- 1981 ---------- --------)- CU-U-G-AG- G|-------G UA-U|GGU-A AGA-AU-CU- 2041 GU--A-AC-| -auag----- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- --GGU|-CAA -|UC-CGCA| GCC|-AA--- 2221 |GUCC----- ------(--- ---------- ---------- ---------- ---------- 2281 ---------- ----)|-|U| AA----|g-- g--------- ---------- ---------- 2341 -g-aau-au- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 --------cc -u--a-u|-- ---------- GGAU|--GC| AGU|--UCA| AC-GACU-A| 2521 -UAA|GGC-A --G-UG|G|G U-ggc----- ---------- --acacag-- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 --ugCUGCU- |UAA-GA-UA |UA-GUC|-- --uu------ gcc---cccc u--------- 2761 ------gaga ---------- ---------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---------- ---------- 2881 ---------- --------a- g--------- -g--ggccuu a--------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ------a--a a---ggaaag ggccuaacca 3121 g--------- ---------- ---------- ---------- ---------- ---------- 3181 ---------- ---------- ---------- ----cc---- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ---------- ---------- ---------- ---------- ---------- ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- -----ccg-- ---------- ------gagu uua---ag-- 4021 --g------- ---------g u-au-aca-- ---------- ---------- ---------- 4081 uguc------ ---------- ---------- ---------- ---------- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- ---------- ------uaug u-auac---- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- -----gg--- ---------- aguaaca|G- -||ucu-uag uuggug| // LOCUS C1-S-1139- 4557 bp RNA RNA ~?~???? DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 4557) Corresponding GenBank entry: DIVIDER BASE COUNT 0 a 0 c 0 g 0 t 4557 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- --------|- ---------- ---------- ---------- ---------- 301 ---------- ---------- -----|--|- ---------| |||||||||| |||~|..... 361 .......... .......... .......... .......... .......... .......... 421 .......... .......... .......... .......... .......... .......... 481 .......... .......... .......... .......... .......... .......... 541 .......... .......... .......... .......... .......... .......... 601 .......... .......... .......... .......... .......... .......... 661 .......... .......... .......... .......... .......... .......... 721 .......... .......... ....|..... .......... ..-....... .......... 781 .......... .......... .......... .......... .......... .......... 841 .......... .......... .......... .......... .......... .......... 901 .......... .......... .......... .......... .......... .......... 961 .......... ..--...... .......... .......... .......... .......... 1021 .......... .......... .......... .......... .......... .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .......... .......... .......... .......... .......... 1201 .......... .......... .......... .......... .......... .......... 1261 .......... .......... .......... .......... .......... .......... 1321 .......... .......... .......... .......... .......... .......... 1381 .......... .......... .......... .......... .......... .......... 1441 .......... .......... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... .......... .......... .......... .......... .......... 1621 .......... .......... .......... .......... ......-... ......---. 1681 ....------ ---------- ---------- -......... .......... .......... 1741 .......... .......... .......... .......... .......... .......... 1801 .......... .......... ...------- ---------- ---------- ---------- 1861 ---....... .......... .......... .......... .......... .......... 1921 .......... .......... .......... .......... .......-.. .......... 1981 .......... .......... .......... .|........ .......... .......... 2041 .......... -......... .......... .......... .......... .......... 2101 .......... ....-..... .......... .......... .......... .......... 2161 .......... .......... .......... .......... .......... ....-..... 2221 .......... ....--(... .......... .......... .......... .......... 2281 .......... ....)|.|.| .......... .......... .......... .......... 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......-.. .......|.- -......... .......... .......... .......... 2521 ........-. ...-...... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... -......... 2701 .........- .......... .......... .......... .......... .......... 2761 .......... .......--- .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... .......... 2881 .......... ..--...... .......... .......... .......... .......... 2941 .......... .......... .......... .......... .......... .......... 3001 .......... .......... .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .....--... 3121 .......... .......... .......... .......... .......... .......... 3181 .......... .......... .......... .......... .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .......... .......... .......... 3361 .......... .......... .......... .......... .......... .......... 3421 .......... .......... .......... .......... .......... .......... 3481 .......... .......... .......... .......... .......... .......... 3541 .......... .......... .......... .......... .......... .......... 3601 .......... .......... .......... .......... .......... .......... 3661 .......... .......... .......... .......... .......... .......... 3721 .......... .......... .......... .......... .......... .......... 3781 .......... .......... .......... .......... .......... .......... 3841 .......... .......... .......... .......... .......... .......... 3901 .......... .......... .......... .......... .......... .......... 3961 .......... .......... .......... .--....... .......... ...---.... 4021 ....---... .......... .......... .....----- ---------- ---------. 4081 .......... .......... .......... .......... .......... .......... 4141 .......... .......... .......... .......... .......... .......... 4201 .......... .......... .......... .......... .......... .......... 4261 .......... .......... .......... .......... .......... ......---- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 --------.. --........ .......... .........- -.....-... ......| // LOCUS Amp.sp.1.4 4557 bp RNA RNA 28-JAN-191 DEFINITION Amphikrikos sp. Hegewald 1995-26. ACCESSION No information KEYWORDS No information. SOURCE Amphikrikos sp. Hegewald 1995-26. ORGANISM Amphikrikos sp. Hegewald 1995-26. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 4557) Corresponding GenBank entry: AF228690 LOCUS AF228690 3597 bp DNA PLN 17-APR-2000 DEFINITION Amphikrikos sp. Hegewald 1995-26 18S ribosomal RNA gene, partial sequence. ACCESSION AF228690 VERSION AF228690.1 GI:7578835 KEYWORDS . SOURCE Amphikrikos sp. Hegewald 1995-26. ORGANISM Amphikrikos sp. Hegewald 1995-26 Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; Oocystaceae; Amphikrikos. REFERENCE 1 (bases 1 to 3597) AUTHORS Hepperle,D., Hegewald,E. and Krienitz,L. TITLE Phylogenetic Position of Oocystaceae (Chlorophyta) JOURNAL Unpublished REFERENCE 2 (bases 1 to 3597) AUTHORS Hepperle,D., Hegewald,E. and Krienitz,L. TITLE Direct Submission JOURNAL Submitted (26-JAN-2000) Dep. Stratified Lakes, Institute of Freshwater Ecology and Inland Fisheries, Alte Fischerhuette 2, Stechlin, Brandenburg 16775, Germany FEATURES Location/Qualifiers source 1..3597 /organism="Amphikrikos sp. Hegewald 1995-26" /strain="Hegewald 1995-26" /db_xref="taxon:120763" rRNA join(<1..129,557..968,1387..1575,2006..2590, 2995..>3425) /product="18S ribosomal RNA" BASE COUNT 871 a 849 c 1054 g 816 t 7 others BASE COUNT 106 a 120 c 130 g 72 t 4129 others ORIGIN 1 |gagaccucc gccu||ua-- -------(-- --auuag--- ---------- ---------- 61 ---------- ---------- --)------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- ---------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 -------|-- ---ua|gggc g---|----- --------ag gc-|AGGCU- ---------- 781 ---------- ---------- --------(c aaaaggccu- ---------- ---------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 ----A--GCC U|--A----- -----|GUC- G--------- gg-cggc--- -----gc--- 1021 --(aaa---- ---------- ---------- ---------c uauaacaucc gagagc---- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 ---------- ---------- ---------- ---------- ---------- ---------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- ---------- -)-------- ----gc---- 1561 ---------- ---------- ---------- ---------- ---------- ---------- 1621 ----gucgcc --a--CGGC| --AA|CACC- G-U-C|AAAU |UG--C-CUG |GACA----| 1681 U-CC------ ---------- ---------- -|Cgc----- ---------- ---------- 1741 ---------- ---------- ---------- ---------- --------UA GA|------C 1801 CA-------- GC-GA|U-AC C|-------- ---------- ---------- ---------- 1861 ---|GCC-C- CC-G-G---- -G-UC-(GAA A--------- ---------- ---------- 1921 ---------- -)-GAC-aCC --G-GuG-G- G-C|A---|C C-A-a-G-GC (GAAA----- 1981 ---------- --------)G UC-G-U--G- G|-------G UA-U|GGU-A AAA-AA-UC- 2041 GC--U-GG-| -guag----- ------|--- ---------- ---------- ---------- 2101 ---------- ---------- ---------- -|-------- ---------- ---------- 2161 ---------- ---------- ---------- --GGA|-CAA -|UG-GGCA| GCC|-AA--- 2221 |GUCC----- ------(--- ---------- ---------- ---------- ---------- 2281 ---------- ----)|-|U| AA----|ggg cc-------- ---------- ---------- 2341 (u-uua-cc- ---------- ---------- ---------- ---------- ---------- 2401 -------)-- ---------- ---------- ---------- ---------- -------|-- 2461 ------g-gc cu-|A|U|-- ---------- GGAU|--GC| AGU|--UCA| CA-GACU-A| 2521 -AAU|GUC-G --G-UG|G|G UCcggcuu-- ---------- -(caca---- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ggcugGGCU- |UAA-GA-UA |UA-GUC|G| A|GC-----| ccc--|cacc ---------- 2761 ----(-GAGA ---------- )--------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---------- ---------- 2881 --|------- ----g-g-u- g|-------- --|-ccggcg gc-------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---------- ---------- 3121 ---------- ---------- ---------- ---------- ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ---------- ---------- ---------- ---------- ---------- ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 -----maaag gguugcucuc gacccccga- a--|------ ---------- --g---ccac 4021 cgg|------ --------|g cugg-g---- ---------- ---------- ---------( 4081 uguugaaaua ugcacac--- ---------- ---------- ---------- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- --------|- ---------u c-cagc|--- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------| ---------- -gguauaa-| -----GC|G- -||gcu-aaa uagucc| // LOCUS Sel.c.1.5 4557 bp RNA RNA 28-JAN-191 DEFINITION Selenastrum capricornutum. ACCESSION No information KEYWORDS No information. SOURCE Selenastrum capricornutum. ORGANISM Selenastrum capricornutum. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 4557) Corresponding GenBank entry: AF169628 LOCUS AF169628 4099 bp DNA PLN 01-AUG-2000 DEFINITION Selenastrum capricornutum small subunit ribosomal RNA gene, complete sequence. ACCESSION AF169628 VERSION AF169628.1 GI:9622215 KEYWORDS . SOURCE Selenastrum capricornutum. ORGANISM Selenastrum capricornutum Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; Chlorellales; Selenastraceae; Selenastrum. REFERENCE 1 (bases 1 to 4099) AUTHORS Booton,G.C., Floyd,G.L. and Fuerst,P.A. TITLE Multiple group I introns detected in the nuclear small subunit rDNA of the autosporic green algae Selenastrum capricornutum JOURNAL unpublished REFERENCE 2 (bases 1 to 4099) AUTHORS Booton,G.C., Floyd,G.L. and Fuerst,P.A. TITLE Direct Submission JOURNAL Submitted (16-JUL-1999) Molecular Genetics, The Ohio State University, 484 W. 12th Ave., Columbus, OH 43210, USA FEATURES Location/Qualifiers source 1..4099 /organism="Selenastrum capricornutum" /strain="UTEX 1648" /db_xref="taxon:118073" rRNA join(1..149,543..557,955..1956,2342..2438,2771..2845, 3284..3713,4075..4099) /product="small subunit ribosomal RNA" intron 150..542 /note="group I" intron 558..954 /note="group I" intron 1957..2341 /note="group I" intron 2439..2771 /note="group I" intron 2846..3283 /note="group I" intron 3714..4074 /note="group I" BASE COUNT 1028 a 892 c 1084 g 937 t 158 others BASE COUNT 116 a 114 c 125 g 100 t 4102 others ORIGIN 1 |gagaccuca gccU||ua-- -------(-- --auugag-- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- ---------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 -------|-- ---ua|Gggu cgag|----- ---------- aa-|AGGUGC Uug------- 781 ---------- ---------- --------(a aaa------- ---------- ---------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ----CAA-G- 961 ----C--GCC U|-------- -----|GUUn AG-------- uc-gguu--- -----g---- 1021 --(auu---- ---------- ---------- ---------g ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 ---------- ---------- ---------- ---------- ---------- ---------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- ---------- -)-------- -----c---- 1561 ---------- ---------- ---------- ---------- ---------- ---------- 1621 ----aaccgg --c--uggc| --GA|CACC- C-U-C|AAAC |UG--C-CGG |GACA----| 1681 C-CC------ ---------- ---------- -|Cgc----- ---------- ---------- 1741 ---------- ---------- ---------- ---------- --------UA GA|------C 1801 CC-------- AC-AG|U-AC C|-------- ---------- ---------- ---------- 1861 ---|GUC-U- GC-n-U---- -U-UG-(GAA A--------- ---------- ---------- 1921 ---------- ---CGA--GC --G-C-C-G- A-C|----|U C-c-U-U-G- (GCUAA---- 1981 ---------- --------)C AG-C-CucG- G|-------G CA-U|GGU-A ACA-AC-CU- 2041 GU--G-GG-| -guuag---- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- --GGG|-CAA -|UC-GGCA| GCC|-AA--- 2221 |GUCC----- ------(--- ---------- ---------- ---------- ---------- 2281 ---------- ----)|-|U| AA----|cgg gcgcuuuunu uuu------- ---------- 2341 (g-cug---- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- -----aaaag 2461 gaauugcugc cca|A|C|-- ---------- GGAU|--GC| AGU|--UCA| CA-GACU-A| 2521 -GAU|GUG-G --G-UG|G|G UUGaaugaau uugacuc--- -(augaaccc caaauc---- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- --gagucaau 2701 aauucAGCu- |UAA-GA-UA |UA-GUC|G| -|GC-----| cc---|ccau ca-------- 2761 ----(-GAGA ---------- )--------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---------- ---------- 2881 ---------- -u--g-u-g- n|-------- --|-cgugug ag-------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- -|----agga ---|cuuuu- gu--(--cgu 3121 uugcccaa-- ---------- ---------- ---------- ---------- ---------- 3181 ---------- ---------- -----)--au g-agag|--- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ---------- ---------- ---------- ---------- ---------- ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- ---------- 4021 ---------- ---------- ---------- ---------- ---------- ---------- 4081 ---------- ---------- ---------- ---------- ---------- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- ---------- -------cuc g-cacn|n-- --------ac gcugaucaca 4261 gcgcugcnn- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 --------g| ----gaacca ---------| -----GC|G- -||gcu-aaa uaguca| // LOCUS C1-S-1199 4557 bp RNA RNA ~?~???? DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 4557) Corresponding GenBank entry: DIVIDER BASE COUNT 0 a 0 c 0 g 0 t 4557 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- --------|- ---------- ---------- ---------- ---------- 301 ---------- ---------- -----|--|- ---------| |||||||||| |||~|..... 361 .......... .......... .......... .......... .......... .......... 421 .......... .......... .......... .......... .......... .......... 481 .......... .......... .......... .......... .......... .......... 541 .......... .......... .......... .......... .......... .......... 601 .......... .......... .......... .......... .......... .......... 661 .......... .......... .......... .......... .......... .......... 721 .......... .......... ....|..... .......... ..-....... .......... 781 .......... .......... .......... .......... .......... .......... 841 .......... .......... .......... .......... .......... .......... 901 .......... .......... .......... .......... .......... .......... 961 .......... ..--...... .......... .......... .......... .......... 1021 .......... .......... .......... .......... .......... .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .......... .......... .......... .......... .......... 1201 .......... .......... .......... .......... .......... .......... 1261 .......... .......... .......... .......... .......... .......... 1321 .......... .......... .......... .......... .......... .......... 1381 .......... .......... .......... .......... .......... .......... 1441 .......... .......... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... .......... .......... .......... .......... .......... 1621 .......... .......... .......... .......... ......-... ......---. 1681 ....------ ---------- ---------- -......... .......... .......... 1741 .......... .......... .......... .......... .......... .......... 1801 .......... .......... ...------- ---------- ---------- ---------- 1861 ---....... .......... .......... .......... .......... .......... 1921 .......... .......... .......... .......... .......-.. .......... 1981 .......... .......... .......... .|........ .......... .......... 2041 .......... -......... .......... .......... .......... .......... 2101 .......... ....-..... .......... .......... .......... .......... 2161 .......... .......... .......... .......... .......... ....-..... 2221 .......... ....--(... .......... .......... .......... .......... 2281 .......... ....)|.|.| .......... .......... .......... .......... 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......-.. .......|.- -......... .......... .......... .......... 2521 ........-. ...-...... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... -......... 2701 .........- .......... .......... .......... .......... .......... 2761 .......... .......--- .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... .......... 2881 .......... ..--...... .......... .......... .......... .......... 2941 .......... .......... .......... .......... .......... .......... 3001 .......... .......... .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .....--... 3121 .......... .......... .......... .......... .......... .......... 3181 .......... .......... .......... .......... .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .......... .......... .......... 3361 .......... .......... .......... .......... .......... .......... 3421 .......... .......... .......... .......... .......... .......... 3481 .......... .......... .......... .......... .......... .......... 3541 .......... .......... .......... .......... .......... .......... 3601 .......... .......... .......... .......... .......... .......... 3661 .......... .......... .......... .......... .......... .......... 3721 .......... .......... .......... .......... .......... .......... 3781 .......... .......... .......... .......... .......... .......... 3841 .......... .......... .......... .......... .......... .......... 3901 .......... .......... .......... .......... .......... .......... 3961 .......... .......... .......... .--....... .......... ...---.... 4021 ....---... .......... .......... .....----- ---------- ---------. 4081 .......... .......... .......... .......... .......... .......... 4141 .......... .......... .......... .......... .......... .......... 4201 .......... .......... .......... .......... .......... .......... 4261 .......... .......... .......... .......... .......... ......---- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 --------.. --........ .......... .........- -.....-... ......| // LOCUS Mac.h.1.2 4557 bp RNA RNA 02-JAN-1999 DEFINITION Macropharyngomonas halophila.. ACCESSION No information KEYWORDS No information. SOURCE Macropharyngomonas halophila. ORGANISM Macropharyngomonas halophila. REFERENCE 1 (sites) AUTHORS Silberman,J.D., Roger,A.J., Nerad,T.A., Gunderson,J.H. and Sogin,M.L. TITLE Phylogenetic diversity of the Heteroloboseans (amoebae-flagellates) as revealed by nuclear 16S-like gene analyses JOURNAL Unpublished STANDARD No information COMMENTS Sequence information (bases 1 to 4557) Corresponding GenBank entry: AF011465 LOCUS AF011465 2962 bp rRNA INV 02-JAN-1999 DEFINITION Macropharyngomonas halophila 16S-like ribosomal RNA gene, complete sequence. ACCESSION AF011465 NID g4102254 KEYWORDS . SOURCE Macropharyngomonas halophila. ORGANISM Macropharyngomonas halophila Eukaryotae; mitochondrial eukaryotes; Heterolobosea; Macropharyngomonas. REFERENCE 1 (bases 1 to 2962) AUTHORS Silberman,J.D., Roger,A.J., Nerad,T.A., Gunderson,J.H. and Sogin,M.L. TITLE Phylogenetic diversity of the Heteroloboseans (amoebae-flagellates) as revealed by nuclear 16S-like gene analyses JOURNAL Unpublished REFERENCE 2 (bases 1 to 2962) AUTHORS Silberman,J.D., Roger,A.J., Nerad,T.A., Gunderson,J.H. and Sogin,M.L. TITLE Direct Submission JOURNAL Submitted (30-JUN-1997) Bay Paul Center for Comparative Molecular Biology and Evolution, Marine Biological Laboratory, 7 MBL St., Woods Hole, MA 02543, USA FEATURES Location/Qualifiers source 1..2962 /organism="Macropharyngomonas halophila" /strain="ATCC 50621; ATCC 50622" /db_xref="taxon:63601" /db_xref="ATCC:50621" /db_xref="ATCC:50622" rRNA join(1..1562,1942..2156,2517..2962) /product="16S-like ribosomal RNA" intron 1563..1941 /note="group I intron" intron 2157..2516 /note="group I intron" BASE COUNT 826 a 598 c 747 g 790 t 1 others BASE COUNT 108 a 82 c 112 g 83 t 4172 others ORIGIN 1 |ggcuauaac aggU||u--- ---------- uaa-----a- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- ---------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 ---------- ----g|Gcuu g---|----- ---------- ---|AGUGG- CGC------- 781 ---------- ---------- --------(g aaa------- ---------- ---------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --GCGaCCGC U|--uu---- -----|gug- gcu------- ---------- ---------- 1021 --(aca---- ---------- ---------- ---------a ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 ---------- ---------- ---------- ---------- ---------- ---------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- ---------- -)-------- ---------- 1561 ---------- ---------- ---------- ---------- ---------- ---------- 1621 ---------a --g--ucgc| --GA|CACC- G-U-C|AAAU |UG--C-GGG |AACA----| 1681 C-CC------ ---------- ---------- -|u------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- --------AA AG|------C 1801 UU-------- CA-AC-U-AC C|-------- ---------- ---------- ---------- 1861 ---|AAG-C- GU-A-u---- -G-UG-(GAA A--------- ---------- ---------- 1921 ---------- -)-CAC-uUG --C-G-U--- G-G|----|C C-AGG-G-U- (-aaug---- 1981 ---------- --------)- AC-C-U-CG- G|-------G UA-U|GGU-A AAA-AC-GU- 2041 UG--A-AG-| -Aug------ ------|aaa caau------ ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- -------|-| ||GGG|-CAA -|UC-CGCA| GCC|-AA--- 2221 |GCCCU---- ------(--- ---------- ---------- ---------- ---------- 2281 ---------- ----)|-|A| AA----|ggg a--------- ---------- ---------- 2341 (u-uuu---- ---------- ---------- ---------- ---------- ---------- 2401 -------)|- ---------- ---------- ---------- ---------- -------|-- 2461 --------uc cu-|a|-|-- ---------A GGGU|--GC| AGU|--UCA| CA-GACU-A| 2521 -GAU|GUC-G --G-UG|G|G UAGagu---- ---------- -(cgu)---- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 -acuCUGCU- |UAA-GA-UA |UA-GUC|G| -|AG-----| gc---|cacc gu-------- 2761 ----(-GAAA ---------- )|---|---- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---------- ---------- 2881 --|------- ac--g-g-u- g|-------- --|cacagug g--------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- --------ag gaa|auucg- ggg-(--uaa 3121 c--------- ---------- ---------- ---------- ---------- ---------- 3181 ---------- ---------- -----)-ucc u-ggau|--- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ---------- ---------- ---------- ---------- ---------- ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- --|ggagag- ---|------ ---------- --c---cgcu 4021 gug|------ --------|g guagac---- ---------- ---------- ---------( 4081 aaaa------ ---------- ---------- ---------- ---------- ---------- 4141 -)-------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- --------|- --------gu c-uacu|--- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------| ---------- gguaac---| -----CU|g- -||cug-uaa ugcccu| // LOCUS C1-S-1506 4557 bp RNA RNA ~?~???? DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 4557) Corresponding GenBank entry: DIVIDER BASE COUNT 0 a 0 c 0 g 0 t 4557 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- --------|- ---------- ---------- ---------- ---------- 301 ---------- ---------- -----|--|- ---------| |||||||||| |||~|..... 361 .......... .......... .......... .......... .......... .......... 421 .......... .......... .......... .......... .......... .......... 481 .......... .......... .......... .......... .......... .......... 541 .......... .......... .......... .......... .......... .......... 601 .......... .......... .......... .......... .......... .......... 661 .......... .......... .......... .......... .......... .......... 721 .......... .......... ....|..... .......... ..-....... .......... 781 .......... .......... .......... .......... .......... .......... 841 .......... .......... .......... .......... .......... .......... 901 .......... .......... .......... .......... .......... .......... 961 .......... ..--...... .......... .......... .......... .......... 1021 .......... .......... .......... .......... .......... .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .......... .......... .......... .......... .......... 1201 .......... .......... .......... .......... .......... .......... 1261 .......... .......... .......... .......... .......... .......... 1321 .......... .......... .......... .......... .......... .......... 1381 .......... .......... .......... .......... .......... .......... 1441 .......... .......... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... .......... .......... .......... .......... .......... 1621 .......... .......... .......... .......... ......-... ......---. 1681 ....------ ---------- ---------- -......... .......... .......... 1741 .......... .......... .......... .......... .......... .......... 1801 .......... .......... ...------- ---------- ---------- ---------- 1861 ---....... .......... .......... .......... .......... .......... 1921 .......... .......... .......... .......... .......-.. .......... 1981 .......... .......... .......... .|........ .......... .......... 2041 .......... -......... .......... .......... .......... .......... 2101 .......... ....-..... .......... .......... .......... .......... 2161 .......... .......... .......... .......... .......... ....-..... 2221 .......... ....--(... .......... .......... .......... .......... 2281 .......... ....)|.|.| .......... .......... .......... .......... 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......-.. .......|.- -......... .......... .......... .......... 2521 ........-. ...-...... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... -......... 2701 .........- .......... .......... .......... .......... .......... 2761 .......... .......--- .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... .......... 2881 .......... ..--...... .......... .......... .......... .......... 2941 .......... .......... .......... .......... .......... .......... 3001 .......... .......... .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .....--... 3121 .......... .......... .......... .......... .......... .......... 3181 .......... .......... .......... .......... .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .......... .......... .......... 3361 .......... .......... .......... .......... .......... .......... 3421 .......... .......... .......... .......... .......... .......... 3481 .......... .......... .......... .......... .......... .......... 3541 .......... .......... .......... .......... .......... .......... 3601 .......... .......... .......... .......... .......... .......... 3661 .......... .......... .......... .......... .......... .......... 3721 .......... .......... .......... .......... .......... .......... 3781 .......... .......... .......... .......... .......... .......... 3841 .......... .......... .......... .......... .......... .......... 3901 .......... .......... .......... .......... .......... .......... 3961 .......... .......... .......... .--....... .......... ...---.... 4021 ....---... .......... .......... .....----- ---------- ---------. 4081 .......... .......... .......... .......... .......... .......... 4141 .......... .......... .......... .......... .......... .......... 4201 .......... .......... .......... .......... .......... .......... 4261 .......... .......... .......... .......... .......... ......---- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 --------.. --........ .......... .........- -.....-... ......| // LOCUS Chl.e.1.1S 4557 bp RNA RNA 28-JAN-191 DEFINITION Chlorella ellipsoidea. ACCESSION No information KEYWORDS No information. SOURCE Chlorella ellipsoidea. ORGANISM Chlorella ellipsoidea. REFERENCE 1 (sites) AUTHORS Huss,V.A.R. JOURNAL Direct Submission STANDARD No information COMMENTS Sequence information (bases 1 to 4557) Corresponding GenBank entry: X63520 intron 1770..2210 /evidence=EXPERIMENTAL /note="Group I self-splicing" BASE COUNT 115 a 118 c 130 g 99 t 4095 others ORIGIN 1 |~~~~uaaca aggU||uuc- -------(-- --caauuggu acgcugacaa agaugguccu 61 uccgucaagu ucacguacu- --)------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- ---------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 -------|-- --gaa|Gccu u---|----- ---------- ---|AGCC-- ---------- 781 gccuc(gcaa --)ga-cg-- ---------a cucgc----- cgcgacuucc uc-------- 841 --uuaucgag aggu-aaa-c aaggagcgag uuuaaa---- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 -------GGC U|--A----- -----|GUC- AG-------- ---------- ---------- 1021 --(cuc---- ---------- ---------- ---------a g--------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 ---------- ---------- ---------- ---------- ---------- ---------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- ---------- -)-------- ---------- 1561 ---------- ---------- ---------- ---------- ---------- ---------- 1621 ---------- --C--UGGC| --AA|CACC- G-U-C|AAAU |UG--C-GGG |AACA----| 1681 U-CC------ ---------- ---------- -|Ua------ ---------- ---------- 1741 ---------- ---------- ---------- ---------- --------AG AG|------C 1801 UAu------- CG-AC|C-AC C|-------- ---------- ---------- ---------- 1861 ---|AAG-C- AG-G-C-u-- -G-CU-(GAA A--------- ---------- ---------- 1921 ---------- -)-GGC--GU --C-U-G-U- G-G|----|C C-GGA-U-U- (-aacg---- 1981 ---------- --------)- AC-U-C-CG- G|-------G UA-A|GGU-A ACA-GC-GU- 2041 CGg-U-AG-| -A-------- ------|uga agcuucc--- ---------- --(cu-gac- 2101 --c)------ ---------g gaggcugaaa u|-------- ---------- ---------- 2161 ---------- ---------- ---------- --GGA|-UCA -|UC-CGCA| GCC|-AA--- 2221 |GUCC----- ------(--- ---------- ---------- ---------- ---------- 2281 ---------- ----)|-|C| UC----|cuc agacgc---- ---------- ---------- 2341 (u-uuc-aag ---------- ---------- ---------- ---------- ---------- 2401 -------)-- ---------- ---------- ---------- ---------- -------|-- 2461 ---gugu-cu gg-|C|G|-- ---------- GGAU|--GC| UGU|--UCA| CA-GACU-A| 2521 -AAU|GAU-G --G-UG|G|G UCcgcuc--- ---------- -(auggc--- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------) ---------- 2701 gagugGGCU- |UAA-GA-UA |UA-GUC|G| -|GG-----| uc---|gcuc ug-------- 2761 ----(-GAAA ---------- )--------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---------- ---------- 2881 ---------- ca--g-g-g- c|-------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- )--------- ---------- ---------- 3121 ---------- ---------- ---------- ---------- ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ---------- ---------- ---------- ---------- ---------- ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- ---------- 4021 ---------- ---------- ---------- ---------- ---------- ---------- 4081 ---------- ---------- ---------- ---------- ---------- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------a 4201 gcgaauc--- ---------- ---------- ---------- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 --------gc --aguacuuc a--------| -----CC|G- -||uuc-cgu agguga| // LOCUS Chl.e.2.1 4557 bp RNA RNA 15-JAN-1994 DEFINITION Chlorella ellipsoidea str. IAM C-87. ACCESSION No information KEYWORDS No information. SOURCE Chlorella ellipsoidea str. IAM C-87. ORGANISM Chlorella ellipsoidea. REFERENCE 1 (sites) AUTHORS Aimi,T.;Yamada,T.;Murooka,Y. TITLE A group I intron in the nuclear small subunit rRNA gene of the... JOURNAL Gene 139, 65-71 (1993) STANDARD No information COMMENTS Sequence information (bases 1 to 4557) Corresponding GenBank entry: D13324 BASE COUNT 115 a 119 c 133 g 100 t 4090 others ORIGIN 1 |gucguaaca aggU||uuc- -------(-- --caauuggu acgcugacaa agaugguccu 61 uccgucaagu ucacguacu- --)------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- ---------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 -------|-- --gaa|Gccu u---|----- ---------- ---|AGCC-- ---------- 781 gccuc(gcaa --)ga-ggc- ---------a cucgc----- cgcgacuucc uc-------- 841 --uuaucgag aggu-aaa-c aaggagcgag uuuaaa---- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 -------GGC U|--A----- -----|GUC- AG-------- ---------- ---------- 1021 --(cuc---- ---------- ---------- ---------a g--------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 ---------- ---------- ---------- ---------- ---------- ---------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- ---------- -)-------- ---------- 1561 ---------- ---------- ---------- ---------- ---------- ---------- 1621 ---------- --C--UGGC| --AA|CACC- G-U-C|AAAU |UG--C-GGG |AACA----| 1681 U-CC------ ---------- ---------- -|Ua------ ---------- ---------- 1741 ---------- ---------- ---------- ---------- --------AG AG|------C 1801 UAu------- CG-AC|C-AC C|-------- ---------- ---------- ---------- 1861 ---|AAG-C- AG-G-C-u-- -G-CU-(GAA A--------- ---------- ---------- 1921 ---------- -)-GGC--GU --C-U-G-U- G-G|----|C C-GGA-U-U- (-aacg---- 1981 ---------- --------)- AC-U-C-CG- G|-------G UA-A|GGU-A ACA-GC-GU- 2041 CGg-U-AG-| -A-------- ------|uga agcuucc--- ---------- --(cu-gac- 2101 --c)------ ---------g gaggcugaaa u|-------- ---------- ---------- 2161 ---------- ---------- ---------- --GGA|-UCA -|UC-CGCA| GCC|-AA--- 2221 |GUCC----- ------(--- ---------- ---------- ---------- ---------- 2281 ---------- ----)|-|C| UC----|cuc agacgc---- ---------- ---------- 2341 (u-uuc-aag ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- -------|-- 2461 ---gugu-cu gg-|C|G|-- ---------- GGAU|--GC| UGU|--UCA| CA-GACU-A| 2521 -AAU|GAU-G --G-UG|G|G UCcgcuc--- ---------- -(auggc--- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 gagugGGCU- |UAA-GA-UA |UA-GUC|G| -|GG-----| uc---|gcuc ug-------- 2761 ----(-GAAA ---------- )--------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---------- ---------- 2881 ---------- ca--g-g-g- c|-------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---------- ---------- 3121 ---------- ---------- ---------- ---------- ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- -agcgaauc- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ---------- ---------- ---------- ---------- ---------- ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- ---------- 4021 ---------- ---------- ---------- ---------- ---------- ---------- 4081 ---------- ---------- ---------- ---------- ---------- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- ---------- ---------- ---------- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 --------gc --aguacuuc a--------| -----CC|G- -||uuc-cgu agguga| // LOCUS Chl.m.1.1 4557 bp RNA RNA 28-JAN-191 DEFINITION Chlorella mirabilis. ACCESSION No information KEYWORDS No information. SOURCE Chlorella mirabilis. ORGANISM Chlorella mirabilis. REFERENCE 1 (sites) AUTHORS Huss V.A.R. JOURNAL Direct Submission STANDARD No information COMMENTS Sequence information (bases 1 to 4557) Corresponding GenBank entry: X74000 FT intron 1770..2257 FT /number=1 FT /note="group I intron" BASE COUNT 97 a 167 c 178 g 67 t 4048 others ORIGIN 1 |~~~~uaaca aggU||cucg ---------- ---------- ---------- ---------- 61 ---------- ---------- ---|------ -----ccugu acagc|agca -ugau----- 121 (((cccucc- ---------) ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- ---------- 661 ---------- ---------- ---------- ----|----g ucgaguu|-- --------uu 721 cauguac|-- cgaag|Gccu u---|----- ---------- ---|AGC--- ---------- 781 cgccc(gaaa --)gg-gug- ---------c ccccg----c cgcgacgcgg cc-------- 841 --gccacggg agcg-ggc-c gcaccaagga acgcggggcu gaaagc---- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------GC U|--A----- -----|GUC- CG-------- ac-cggc--- ---------- 1021 --(cga---- ---------- ---------- ---------g u--------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 ---------- ---------- ---------- ---------- ---------- ---------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- ---------- -)-------- ---------- 1561 ---------- ---------- ---------- ---------- ---------- ---------- 1621 ----gccgau --C--GGGC| --AA|CACC- G-U-C|AAAU |UG--C-GGG |GACU----| 1681 C-CC------ ---------- ---------- -|Ua------ ---------- ---------- 1741 ---------- ---------- ---------- ---------- --------AC AG|------C 1801 UCu------- CG-AC|C-AC C|-------- ---------- ---------- ---------- 1861 ---|AAG-C- GG-G-C-g-- -C-CC-(GAA A--------- ---------- ---------- 1921 ---------- -)-GGG--GC --C-C-G-U- G-G|----|C C-AGG-G-U- (-cacg---- 1981 ---------- --------)- AC-C-U-CG- G|-------G UA-C|GGU-A ACA-GC-GU- 2041 CGa-G-AG-| -A-------- ------|uga ggccguuccc cccc--ccca cc(ca-ug-- 2101 ---)-ggugg ccgg-ggggc gcggcggaaa u|-------- ---------- ---------- 2161 ---------- ---------- ---------- --GGG|-UGA -|UC-CGCA| GCC|-AA--- 2221 |GUCC----- ------(--- ---------- ---------- ---------- ---------- 2281 ---------- ----)|-|U| AC----|ggc cgggc----- ---------- ---------- 2341 (a-gcc-a-- ---------- ---------- ---------- ---------- ---------- 2401 -------)-- ---------- ---------- ---------- ---------- -------|-- 2461 --gcccg-cg cu-|A|C|-- ---------- GGAU|--GC| CGU|--UCA| CA-GACU-A| 2521 -AAU|GGU-G --G-UG|G|G UCcggug--- ---------- -(gcgccagc agcgcg---- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------) ---------- 2701 cgccgGGCU- |UAA-GA-UA |UA-GUC|G| -|GG-----| -----|cccc ugcc------ 2761 ----(-GAAA ---------- )--------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---------- ---------- 2881 --|-----gg ug--g-g-g- g|-------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- )--------- ---------- ---------- 3121 ---------- ---------- ---------- ---------- ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ---------- ---------- ---------- ---------- ---------- ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- ---------- 4021 ---------- ---------- ---------- ---------- ---------- ---------- 4081 ---------- ---------- ---------- ---------- ---------- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- ---------- ---------- ---------- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---ggg---- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 --------ac --gcagaguc a--------| -----CC|G- -||cuc-cgu agguga| // LOCUS Cos.b.1.1 4557 bp RNA RNA 10-JAN-1993 DEFINITION Cosmarium botrytis. ACCESSION No information KEYWORDS No information. SOURCE Cosmarium botrytis. ORGANISM Cosmarium botrytis. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 4557) Corresponding GenBank entry: X77453 BASE COUNT 97 a 151 c 160 g 110 t 4039 others ORIGIN 1 |~~~~~aaca aggU||uuuc guu------- ugauccuucc cgcccggucc cccaacuccc 61 cuuccucaga gcaccuuuga ggauuucuug ggauggggcc cgguucgaga cgc------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- ---------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 -------|-a uggaa|Gccu ----|----- ---------- -g-|AGUGGg gguugcuc-- 781 ---------- ---------- ---------- ---------- (gauggaaug g--------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------g ggcaacc-a- 961 ----C-aUGC U|--A----- -----|GUG- CU-------- gg-gca---- ---------- 1021 --(ucc---- ---------- ---------- ---------g ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 ---------- ---------- ---------- ---------- ---------- ---------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- ---------- -)-------- ---------- 1561 ---------- ---------- ---------- ---------- ---------- ---------- 1621 -----ugccu --U--GUGC| --GA|CGCC- G-U-C|AAUC |UG--C-GGG |GAAU----| 1681 g-uc------ ---------- ---------- -|Cuccuc-- ---------- ---------- 1741 ---------- ---------- ---------- ---------- --------cg UG|------G 1801 UG------ca AG-GG|U-AC C|-------- ---------- ---------- ---------- 1861 ---|AAG-C- GC-G-A-u-- -G-GCU(cgu c-----guug augcaccgac gcguggugcc 1921 gcgacaagga g)AGCC--UA --G-C-G-U- G-G|----|C C-g-g-g--- (-cuag---- 1981 ---------- --------)- -u-g-a--G- G|c------c UA-A|GGU-A AGA-AC-CC- 2041 CU--C-AC-| -cauug---- ------|--- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- --guc|-CGA -|CC-CGCA| uCC|-AA--- 2221 |GCCC----- ------(--- ---------- ---------- ---------- ---------- 2281 ---------- ----)|-|U| GC----|aag uu-------- ---------- ---------- 2341 -c-ugu-ccu acaggauguc gc-------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- -------|-- 2461 ------a-ac uu-|G|C|-- ---------- GGGU|--GG| GGU|--UCA| CA-GACU-A| 2521 -GAU|GAC-G --G-CA|G|G CUcgugcgc- ---------- -(auugc--- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -------gug 2701 cacggGGCU- |CAA-GA-UA |UA-GUC|G| -|gu-----| ccg--|ccca aggcaaga-- 2761 ----(-ucgc u--------- )--------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---------- ---------- 2881 --|-ucucuc ca--a-g-g- g|a------- --|------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---------- ---------- 3121 ---------- ---------- ---------- ---------- ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ---------- ---------- ---------- ---------- ---------- ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- ---------- 4021 ---------- ---------- ---------- ---------- ---------- ---------- 4081 ---------- ---------- ---------- ---------- ---------- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- ---------- ---------- ---------- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ------acuc gcccgc---- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 --------aa --guguauuc a--------| -----cc|G- -||uuc-cgu ag~~~~| // LOCUS Cos.s.1.1 4557 bp RNA RNA 25-JAN-1994 DEFINITION Cosmocladium saxonicum. ACCESSION No information KEYWORDS No information. SOURCE Cosmocladium saxonicum. ORGANISM Cosmocladium saxonicum. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 4557) Corresponding GenBank entry: X79497 BASE COUNT 107 a 114 c 129 g 95 t 4112 others ORIGIN 1 |~~~~~aaca aggU||uuuc -------(-- --cgaugguc cuucucgccc gaa-gguucg 61 agucgcac-- ---------- --)------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- ---------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 -------|-- -ggaa|Gccu ----|----- ---------- -a-|AGUGAc caggg----- 781 ---------- ---------- ---------- ---------- (gcgauugaa aa-------- 841 --aaga---- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- --cccugcg- 961 ----U--UGC U|--A----- -----|GUG- ---------- ---------- ---------- 1021 --(ccg---- ---------- ---------- ---------a gcgagaaaug cu-------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 ---------- ---------- ---------- ---------- ---------- ---------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- ---------- -)-------- ---------- 1561 ---------- ---------- ---------- ---------- ---------- ---------- 1621 ---------- ------CGC| --GA|CGUU- G-C-C|AAAU |UG--C-GGG |GAAG----| 1681 A-CC------ ---------- ---------- -|Ucuuu--- ---------- ---------- 1741 ---------- ---------- ---------- ---------- --------AU UG|------C 1801 GC-------- GG-GU|U-AC C|-------- ---------- ---------- ---------- 1861 ---|AAG-C- ACgG-C---- -G-GC-(cgu ------gcgu ccguuuuuua ggauaaagc- 1921 -acgc----- -)-GCC--GA --G-U-G-U- G-G|----|C C-A-G-G-C- (cguauga-- 1981 ---------- --------)- GC-C-U--G- G|-------G UG-U|GGU-A AUA-AC-AU- 2041 CC--GaCG-| -cucauucca uuuucuggaa aaaa------ ---------- ---------- 2101 ---------- ---------- ---------- -|-------- ---------- ---------- 2161 ---------- ---------- ---------- --GGU|-GGA -|CC-CGCA| GCC|-AA--- 2221 |ACCCgu--- ------(uuc g--------- ---------- ---------- ---------- 2281 ---------- ----)|-|-| ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- -------|-- 2461 ---------- ---|-|-|-- --------gc GGGU|--GC| UGU|--CCA| CA-GACU-A| 2521 -AAU|GGC-A --A-CG|G|G CCcguc---- ---------- -(ccaauuaa auggc----- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 --gacGGCU- |CAA-GA-UA |UA-GUC|G| -|GG-----| -----|ccug caggu----- 2761 ----(-gcau a--------- )--------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---------- ---------- 2881 --|----auc ug--c-a-g- g|-------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---------- ---------- 3121 ---------- ---------- ---------- ---------- ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ---------- ---------- ---------- ---------- ---------- ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- ---------- 4021 ---------- ---------- ---------- ---------- ---------- ---------- 4081 ---------- ---------- ---------- ---------- ---------- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- ---------- ---------- ---------- ---------- ---------- 4261 ---------- ---------- ---------- ---------- --aaauugga aaaagc---- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 --------cu --ucucgcaa gugaauuca| -----CC|G- -||uuc-cgu ~~~~~~| // LOCUS Gen.s.1.1 4557 bp RNA RNA 26-JAN-1993 DEFINITION Genicularia spirotaenia. ACCESSION No information KEYWORDS No information. SOURCE Genicularia spirotaenia. ORGANISM Genicularia spirotaenia. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 4557) Corresponding GenBank entry: X74753 BASE COUNT 98 a 88 c 107 g 85 t 4179 others ORIGIN 1 |~~~~~aaca aggU||uuu- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---|------ ---------- -gccu|ugag c--------- 121 (((agac--- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- ---------- 661 ---------- ---------- ---------- ----|----- --gcuug|-- ---------- 721 -----cg|-- --gaa|Gccu u---|----- ---------- ---|AGC--- ---------- 781 agccc(acaa --)gg-guu- ---------c cccu------ cgcgacuaua uu-------- 841 --u-----aa agga------ ------aggg gauugaau-- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------GC U|--A----- -----|GUG- CC-------- ug-ag----- ---------- 1021 --(cug---- ---------- ---------- ---------c caa------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 ---------- ---------- ---------- ---------- ---------- ---------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- ---------- -)-------- ---------- 1561 ---------- ---------- ---------- ---------- ---------- ---------- 1621 ------cuug --G--GUGC| --GA|CAUC- G-C-C|AAAU |UG--C-GGA |GAAC----| 1681 U-CC------ ---------- ---------- -|aca----- ---------- ---------- 1741 ---------- ---------- ---------- ---------- --------UU UG|------C 1801 CU-------- CG-AU|U-AC C|-------- ---------- ---------- ---------- 1861 ---|AAG-C- GGaC-C---- -G-CC-(GAA A--------- ---------- ---------- 1921 ---------- -)-GGA--CC --C-C-G-U- G-G|----|C C-G-G-G-C- (uaauu---- 1981 ---------- --------)- GC-U-U-UG- G|-------G UA-U|GGU-C AAA-AC-AU- 2041 CG--A-GG-| -Aaaa----- ------|--- ---------- ---------- ---------- 2101 ---------- ---------- ---------- -|-------- ---------- ---------- 2161 ---------- ---------- ---------- --GGA|-UGA -|UC-CGCA| GCG|-AA--- 2221 |ACCC----- ------(--- ---------- ---------- ---------- ---------- 2281 ---------- ----)|-|U| c-----|uu- ---------- ---------- ---------- 2341 (g-uug-uac aa-------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- -------|-- 2461 ---------- aa-|g|u|-- ---------- GGGU|--GG| CGU|--UCA| CA-GACU-A| 2521 -AAC|GGC-G --A-UG|G|G UUccag---- ---------- -(aaauucga aac------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------) ---------- 2701 --cugGGCU- |UAA-GA-UG |UA-GUC|G| -|gu-----| uu---|gucu ucg------- 2761 ----(-aaag ---------- )--------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---------- ---------- 2881 --|-----ug gc--a-g-a- u|-------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---------- ---------- 3121 ---------- ---------- ---------- ---------- ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ---------- ---------- ---------- ---------- ---------- ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- ---------- 4021 ---------- ---------- ---------- ---------- ---------- ---------- 4081 ---------- ---------- ---------- ---------- ---------- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- ---------- ---------- ---------- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- -----u---- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 --------gc --agaguuuc a--------| -----cc|G- -||~~~-~~~ ~~~~~~| // LOCUS Gon.a.1.1 4557 bp RNA RNA 09-FEB-1996 DEFINITION Gonatozygon aculeatum; 18S ribosomal RNA; 18S rRNA gene. ACCESSION X91346 KEYWORDS 18S ribosomal RNA; 18S rRNA gene. SOURCE Gonatozygon aculeatum. ORGANISM Gonatozygon aculeatum. REFERENCE 1 (bases 1 to 2172) AUTHORS Bhattacharya,D., Damberger,S., Surek,B. and Melkonian,M. TITLE introns of the Zygnematales (Charophyta) Primary and secondary structure analyses of the rDNA group I JOURNAL Unpublished STANDARD No information REFERENCE 2 (bases 1 to 2172) AUTHORS Surek,B. TITLE Direct Submission JOURNAL Submitted (08-SEP-1995) B. Surek, Botanisches Institut, Lehrstuhl I, Universitaet zu Koeln, Gyrhofstr.15, 50931 Koeln, FRG STANDARD No information COMMENTS Sequence information (bases 1 to 4557) Corresponding GenBank entry: X91346 NCBI gi: 1184240 BASE COUNT 98 a 106 c 114 g 78 t 4161 others ORIGIN 1 |gucguaaca aggU||uuu- -------(-- --gccucgag caaacgcuug cg-------- 61 ---------- ---------- --)------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- ---------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 -------|-- --gaa|Gccu u---|----- ---------- ---|AGC--- ---------- 781 agccc(gaaa --)ag-guu- ---------c cccu------ cgcgaccaaa uc-------- 841 --c-----ga agga------ ------aggg gauugaau-- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------GC U|--A----- -----|GUG- CC-------- ca-agu---- ---------- 1021 --(ugc---- ---------- ---------- ---------c a--------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 ---------- ---------- ---------- ---------- ---------- ---------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- ---------- -)-------- ---------- 1561 ---------- ---------- ---------- ---------- ---------- ---------- 1621 -----acuug --G--GCGC| --GA|CAUC- G-C-C|AAAU |UG--C-GGA |GAAC----| 1681 U-CC------ ---------- ---------- -|acuau--- ---------- ---------- 1741 ---------- ---------- ---------- ---------- --------UU CG|------C 1801 CU-------- CG-AU|U-AC C|-------- ---------- ---------- ---------- 1861 ---|AAG-C- GGuA-C---- -G-CC-(GAA A--------- ---------- ---------- 1921 ---------- -)-GGA--CU --C-C-G-U- G-G|----|C C-G-G-G-C- (uaguu---- 1981 ---------- --------)- GC-C-U-CG- G|-------G UA-A|GGU-C AUA-AU-AU- 2041 CG--A-GG-| -Augag---- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- -|-------- ---------- ---------- 2161 ---------- ---------- ---------- --GGA|-AGA -|UC-CGCA| GCC|-AA--- 2221 |GCCC----- ------(--- ---------- ---------- ---------- ---------- 2281 ---------- ----)|-|U| c-----|gcg c--------- ---------- ---------- 2341 (c-aaa-c-- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- -------|-- 2461 --------gc uc-|g|u|-- ---------- GGGU|--GC| UGU|--UCA| CA-GACU-A| 2521 -AAC|GGC-G --G-UG|G|G UUccgg---- ---------- -(acucuaga agc------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 -cuggAGCC- |UAA-GA-UA |UA-GUC|G| -|uu-----| cgc--|cuc- ---------- 2761 ----(-gaaa ---------- )--------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---------- ---------- 2881 ---------- ------g-a- g|-------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---------- ---------- 3121 ---------- ---------- ---------- ---------- ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ---------- ---------- ---------- ---------- ---------- ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- ---------- 4021 ---------- ---------- ---------- ---------- ---------- ---------- 4081 ---------- ---------- ---------- ---------- ---------- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- ---------- ---------- ---------- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- --caaucugc agagauuca- -----cc|G- -||uuc-cgu agguga| // LOCUS Mes.c.1.1 4557 bp RNA RNA 10-JAN-1993 DEFINITION Mesotaenium caldariorum. ACCESSION No information KEYWORDS No information. SOURCE Mesotaenium caldariorum. ORGANISM Mesotaenium caldariorum. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 4557) Corresponding GenBank entry: X75763 BASE COUNT 101 a 107 c 125 g 89 t 4135 others ORIGIN 1 |~~~~~aaca aggU||uugg ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- -----|cucg aucgugga-- 121 (((uccu--- ---------) ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- ---------- 661 ---------- ---------- ---------- ----|-uucg cgguuga|-- ---------- 721 --aacua|-- ccgaa|Gccu u---|----- ---------- ---|AGC--- ---------- 781 ugccc(gaaa --)gg-gug- ---------a ccuc------ cgcgacucgc ---------- 841 ----aaaaca agga------ ------gagg ucucaaaa-- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------GC U|--A----- -----|GUGg CU-------- cc-uagc--- ---------- 1021 --(ugc---- ---------- ---------- ---------u gcucgu---- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 ---------- ---------- ---------- ---------- ---------- ---------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- ---------- -)-------- ---------- 1561 ---------- ---------- ---------- ---------- ---------- ---------- 1621 ----gcagug --A--GUGC| --GA|CAUC- A-C-C|AAAU |UG--C-GGG |AAAU----| 1681 C-CC------ ---------- ---------- -|U------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- --------AA AG|------C 1801 UU-------- UG-AC|U-AC C|-------- ---------- ---------- ---------- 1861 ---|AAG-U- GC-G-G-c-- -G-CC-(GAA A--------- ---------- ---------- 1921 ---------- -)-GGC--UC --G-C-A-U- G-G|----|C C-AGG-G-U- (-aaug---- 1981 ---------- --------)- AC-C-U-CG- G|-------G UA-U|GGU-A ACA-AC-GU- 2041 CA--A-AG-| -A-------- ------|ug- ---------- ---------- --(ca-a--- 2101 ----)----- ---------- -------caa u|-------- ---------- ---------- 2161 ---------- ---------- ---------- --GGG|-CUA -|UC-CGCA| GCC|-AA--- 2221 |GUCC----- ------(--- ---------- ---------- ---------- ---------- 2281 ---------- ----)|-|U| CG----|ccg cu-------- ---------- ---------- 2341 (u-cgc---- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- -------|-- 2461 ------a-gc gg-|U|U|-- ---------- GGAU|--GC| UGU|--UCA| CA-GACU-A| 2521 -GAU|GGU-G --G-UG|G|G UUcu------ ---------- -(cggaugcg uccc------ 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---ggGGCU- |UAA-GA-UA |UA-GUC|G| -|GG-----| cc---|ugcu ug-------- 2761 ----(-GAAA ---------- )--------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---------- ---------- 2881 --|------- ca--g---c- g|-------- --|-ggaaau ---------- -(cgca---- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---------- ---------- 3121 ---------- ---------- ---------- ---------- ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ---------- ---------- ---------- ---------- ---------- ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---|------ ---------- -------gau 4021 gca|------ ---------- ---------- ---------- ---------- ---------- 4081 ---------- ---------- ---------- ---------- ---------- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- ---------- ---------- ---------- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------| -------uuc a--------| -----CC|G- -||uuc-cgu agguga| // LOCUS Mou.s.1.1 4557 bp RNA RNA 28-JAN-191 DEFINITION Mougeotia scalaris. ACCESSION No information KEYWORDS No information. SOURCE Mougeotia scalaris. ORGANISM Mougeotia scalaris. REFERENCE 1 (bases 1 to 2172) AUTHORS Huss,V.A.R. JOURNAL Direct Submission STANDARD No information COMMENTS Sequence information (bases 1 to 4557) Corresponding GenBank entry: X70705 intron 1774..2308 /note="group I" BASE COUNT 133 a 143 c 159 g 121 t 4001 others ORIGIN 1 |~~~~uaaca aggU||ucg- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---|------ -----gagag acccg|auga ucucu----- 121 (((uucgu-- ---------) ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- ---------- 661 ---------- ---------- ---------- ----|----- ggaguau|-- --------au 721 auccuac|-- -cgaa|Gccu u---|----- ---------- ---|AGC--- ---------- 781 cgccc(gaaa --)gg-gug- ---------a cccc------ cgcgacguuu ac-------- 841 --u-aaaaca agga------ ------gggg uccgaaagu- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------GC U|--A----- -----|GUG- UU-------- cg-g------ ---------- 1021 --(acu---- ---------- ---------- ---------c guuga----- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 ---------- ---------- ---------- ---------- ---------- ---------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- ---------- -)-------- ---------- 1561 ---------- ---------- ---------- ---------- ---------- ---------- 1621 -------ccg --A--AUGC| --GA|CAUC- G-U-C|AAAC |UG--C-GGG |AGAU----| 1681 C-CC------ ---------- ---------- -|U------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- --------AA AG|------C 1801 UU-------- UG-AC|U-AC C|-------- ---------- ---------- ---------- 1861 ---|AAG-C- AC-CuG---- -G-CC-(GAA A--------- ---------- ---------- 1921 ---------- -)-GGU--CG --G-U-G-U- G-G|----|C C-AGG-G-U- (-aaug---- 1981 ---------- --------)- AC-C-U-CG- G|-------G UA-U|GGU-G ACA-AC-GU- 2041 CA--A-AG-| -A-------- ------|ug- ---------- ---------- --(cc-a--- 2101 ----)----- ---------- -------caa u|-------- ---------- ---------- 2161 ---------- ---------- ---------- --GGG|-UGA -|UC-CGCA| GCC|-AA--- 2221 |GUCC----- ------(--- ---------- ---------- ---------- ---------- 2281 ---------- ----)|-|C| CU----|gga gaagcgacuu ---------- ---------- 2341 (c-aug-auu cuugcccaug acaugucgga gcggacagua uuuugaaccc agagcgccau 2401 uuuuuugaug ucagacaaaa auacgguggc cgcucgcguc ccuccucaug uc-----|ga 2461 gucgcuc-cu cc-|G|A|-- ---------- GGAU|--GC| AGU|--UCA| CA-GACU-A| 2521 -AAC|GGC-G --A-UG|G|G CUugguggcc uc-------- -(cguc---- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------) ----gaggua 2701 agccgAGCU- |UAA-GA-UA |UA-GUC|G| -|GG-----| -----|cccu cgg------- 2761 ----(-GAAA ---------- )--------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---------- ---------- 2881 --|------c cg--a-g-g- g|-------- --|-gguauu ---------- -(cgca---- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- )--------- ---------- ---------- 3121 ---------- ---------- ---------- ---------- ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ---------- ---------- ---------- ---------- ---------- ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---|------ ---------- -------gau 4021 gcu|------ ---------- ---------- ---------- ---------- ---------- 4081 ---------- ---------- ---------- ---------- ---------- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- ---------- ---------- ---------- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------| -------uuc a--------| -----CC|G- -||uuc-cgu agguga| // LOCUS Sph.g.1.1 4557 bp RNA RNA 25-JAN-1994 DEFINITION Sphaerozosma granulatum. ACCESSION No information KEYWORDS No information. SOURCE Sphaerozosma granulatum. ORGANISM Sphaerozosma granulatum. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 4557) Corresponding GenBank entry: X79496 BASE COUNT 91 a 130 c 128 g 83 t 4125 others ORIGIN 1 |~~~~~aaca aggU||uuuc -------(-- --cgaugguc cuucucgccc acaggguucg 61 agucgcac-- ---------- --)------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- ---------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 -------|-- -ggaa|Gccu ----|----- ---------- -g-|AGCAga ccaaaggga- 781 ---------- ---------- --------(g auga------ ---------- ---------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- uuccuug-g- 961 ---gauaUGC U|--A----- -----|GUG- CC-------- ca-agc---- ---------- 1021 --(acu---- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 ---------- ---------- ---------- ---------- ---------- ---------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- ---------- -)-------- ---------- 1561 ---------- ---------- ---------- ---------- ---------- ---------- 1621 -----gcuug --A--GCGC| --GA|CGCC- G-C-C|AAAC |UG--C-GGG |gaa-----| 1681 A-CC------ ---------- ---------- -|acuc---- ---------- ---------- 1741 ---------- ---------- ---------- ---------- --------UU UG|------C 1801 AC-c----ga AG-GC|U-AC C|-------- ---------- ---------- ---------- 1861 ---|AAG-C- ACgG-C---- -G-GCC(gcc --auc-ccac ccaaucucga u-gugggaua 1921 gcg------- -)GGCC--GA --G-U-G-U- G-G|c---|C A-G-G-C--- (cagcga--- 1981 ---------- --------)- -G-C-C--U- G|-------G UA-C|GGU-A AAA-AC-GC- 2041 CU-cG-UG-| -c-------- ------|uga cca------- ---------- --(gg-uu-- 2101 ----)----- ---------- ---uggucgg g|-------- ---------- ---------- 2161 ---------- ---------- ---------- --GGU|-CAA -|CC-CGCA| GCC|-AA--- 2221 |uccugcucc u-----(acc u--------- ---------- ---------- ---------- 2281 ---------- ----)|-|-| ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- -------|-- 2461 ---------- ---|-|-|-- ----gggagc cggu|--GC| UGU|--UCA| CA-GACU-A| 2521 -GAU|GGC-G --A-CG|G|G UCgu------ ---------- -(gcacauug ca-------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---gcGGCU- |CAA-GA-UA |UA-GUC|G| -|gu-----| c----|cacc ---------- 2761 ----(-uucg ---------- )--------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---------- ---------- 2881 ---------- ----g-g-u- g|-------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---------- ---------- 3121 ---------- ---------- ---------- ---------- ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ---------- ---------- ---------- ---------- ---------- ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- ---------- 4021 ---------- ---------- ---------- ---------- ---------- ---------- 4081 ---------- ---------- ---------- ---------- ---------- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- ---------- ---------- ---------- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---agcuagc ccaagc---- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 --------cu --ucucgcau gaguauuca| -----cc|G- -||uuc-~~~ ~~~~~~| // LOCUS Sta.sp.1.1 4557 bp RNA RNA 26-JAN-1993 DEFINITION Staurastrum sp. M752. ACCESSION No information KEYWORDS No information. SOURCE Staurastrum sp. M752. ORGANISM Staurastrum sp. M752. REFERENCE 1 (bases 1 to 2172) AUTHORS Debashish Bhattacharya JOURNAL No information STANDARD No information COMMENTS Sequence information (bases 1 to 4557) Corresponding GenBank entry: X74752 BASE COUNT 108 a 100 c 103 g 103 t 4143 others ORIGIN 1 |~~~~~aaca aggU||uccg u------(-- ---------- ---------- ---------- 61 ---------- ---------- ---|------ ---------- -uuau|gauc c--------- 121 (((uucucgc cccguuau-) ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- ---------- 661 ---------- ---------- ---------- ----|----- --ggguu|-- ---------c 721 gagucgc|-a cggaa|Gccu u---|----- ---------- ---|AGCAC- ---------- 781 ---------- ---------- ---------- ----ua---u gugcauugua uu-------- 841 --uuaauacg cugc-acc-c ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 ----G--UGC U|--A----- -----|GUG- CC-------- aa-ugau--- ---------- 1021 --(gau---- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 ---------- ---------- ---------- ---------- ---------- ---------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- ---------- -)-------- ---------- 1561 ---------- ---------- ---------- ---------- ---------- ---------- 1621 ----gucauu --G--GUGC| --GA|CGUC- A-U-C|AAAC |UG--C-GGG |AAAGc---| 1681 U-CC------ ---------- ---------- -|Ua------ ---------- ---------- 1741 ---------- ---------- ---------- ---------- --------UA UG|------G 1801 CAu------- GG-Ga|U-AC C|-------- ---------- ---------- ---------- 1861 ---|AAG-C- ACgG-C---- -A-UCA(ca- --ca------ uugug----- -------ug- 1921 ---------- -)UGAU--GA --G-U-G-U- G-G|----|C U-G-A-G-U- (uaaugc--- 1981 ---------- --------)- AC-U-C--G- G|-------G UA-A|GGU-A ACA-AC-cC- 2041 CCa-U-GU-| -caaga---- ------|--- ---------- ---------- ---------- 2101 ---------- ---------- ---------- -|-------- ---------- ---------- 2161 ---------- ---------- ---------- --GGA|cCGA -|CC-UGCA| GCC|-AA--- 2221 |GCCUuuggu ------(uau ---------- ---------- ---------- ---------- 2281 ---------- ----)|-|-| ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- -------|-- 2461 ---------- ---|-|-|-- -----accaa GGGU|--GC| UGU|--UCA| CA-GACU-A| 2521 -AAU|GAU-G --A-CG|G|G UUgcuaauca c--------- -(aaagc--- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------) -------gug 2701 auugcAGCU- |CAA-GA-UA |UA-GUC|G| -|ga-----| -----|cuca cu-------- 2761 ----(-cuag ---------- )--------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---------- ---------- 2881 --|------- ag--u-g-a- g|-------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---------- ---------- 3121 ---------- ---------- ---------- ---------- ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ---------- ---------- ---------- ---------- ---------- ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- ---------- 4021 ---------- ---------- ---------- ---------- ---------- ---------- 4081 ---------- ---------- ---------- ---------- ---------- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- ---------- ---------- ---------- ---------- ---------- 4261 ---------- ---------- ---------- ----acaaca cguaauaccu ucccgc---- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 --------ac --gugaauuc a--------| -----cc|G- -||~~~-~~~ ~~~~~~| // LOCUS Sta.sp.2.1 4557 bp RNA RNA 26-JAN-1993 DEFINITION Staurastrum sp. M753. ACCESSION No information KEYWORDS No information. SOURCE Staurastrum sp. M753. ORGANISM Staurastrum sp. M753. REFERENCE 1 (bases 1 to 2172) AUTHORS Debashish Bhattacharya JOURNAL No information STANDARD No information COMMENTS Sequence information (bases 1 to 4557) Corresponding GenBank entry: X77452 BASE COUNT 97 a 95 c 116 g 98 t 4151 others ORIGIN 1 |~~~~~aaca aggU||uccg u------(-- ---------- ---------- ---------- 61 ---------- ---------- ---|------ ---------- -uuau|gauc c--------- 121 (((uucucgc cccguuuu-) ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- ---------- 661 ---------- ---------- ---------- ----|----- --ggguu|-- ---------c 721 gagucgc|-a cggaa|Gccu ----|----- ---------- -g-|AGCAC- ---------- 781 ---------- ---------- ---------- ---------c gugcuguugg aa-------- 841 -----caaau --gc-acc-c ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 ----G--UGC U|--A----- -----|GUG- UC-------- aa-cgac--- ---------- 1021 --(guu---- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 ---------- ---------- ---------- ---------- ---------- ---------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- ---------- -)-------- ---------- 1561 ---------- ---------- ---------- ---------- ---------- ---------- 1621 ----gucguu --G--GCGC| --GA|CGUC- A-U-C|AAAU |UG--C-GGG |AAAUg---| 1681 U-CC------ ---------- ---------- -|ag------ ---------- ---------- 1741 ---------- ---------- ---------- ---------- --------ga cg|------A 1801 AAU------- GG-GA|U-AC C|-------- ---------- ---------- ---------- 1861 ---|AAG-C- ACgG-C---- -A-GCA(ca- --cg------ ucauu----- -------cg- 1921 ---------- -)UGCU-gGA --G-U-G-U- G-G|----|C C-G-A-G-U- (uaaugc--- 1981 ---------- --------)- AC-U-C--G- G|-------G UA-A|GGU-A ACA-AC-UC- 2041 CCa-G-UU-| -cgaua---- ------|--- ---------- ---------- ---------- 2101 ---------- ---------- ---------- -|-------- ---------- ---------- 2161 ---------- ---------- ---------- --GGA|uUGA -|CC-UGCA| GCC|-AA--- 2221 |GCCUuuggu ------(uac ---------- ---------- ---------- ---------- 2281 ---------- ----)|-|-| ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- -------|-- 2461 ---------- ---|-|-|-- -----gccaa GGGU|--AC| UGU|--UCA| CA-GACU-A| 2521 -AAU|GAU-G --A-CG|G|G UUgu-aaaug c--------- -(ggacga-- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------) -------gca 2701 uuugcAGCU- |CAA-GA-UA |UA-GUC|G| -|GG-----| -----|cucg uu-------- 2761 ----(-cuag ---------- )--------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---------- ---------- 2881 --|------- gg--c-g-a- g|-------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---------- ---------- 3121 ---------- ---------- ---------- ---------- ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ---------- ---------- ---------- ---------- ---------- ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- ---------- 4021 ---------- ---------- ---------- ---------- ---------- ---------- 4081 ---------- ---------- ---------- ---------- ---------- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- ---------- ---------- ---------- ---------- ---------- 4261 ---------- ---------- ---------- ----agauga ugauaugccu u-ucgc---- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 --------au --gug-auuc a--------| -----CC|G- -||~~~-~~~ ~~~~~~| // LOCUS Sta.p.1.1 4557 bp RNA RNA 10-SEP-1999 DEFINITION Staurastrum punctulatum.; . ACCESSION AF1154 2 KEYWORDS . SOURCE Staurastrum punctulatum. ORGANISM Staurastrum punctulatum. REFERENCE 1 (bases 1 to 2194) AUTHORS Besendahl,A. and Bhattacharya,D. TITLE Evolutionary analyses of small subunit rDNA coding regions and the 1506 group I introns of the Zygnematales (Charophyceae, Streptoophyta) JOURNAL J. Phycol. 35 (3), 560-569 (1999) STANDARD No information REFERENCE 2 (bases 1 to 2194) AUTHORS Bhattacharya,D. and Besendahl,A. TITLE Direct Submission JOURNAL Submitted (18-DEC-1998) Biological Sciences, University of Iowa, 239 Biology Building, Iowa City, IA 52242-1324, USA STANDARD No information COMMENTS Sequence information (bases 1 to 4557) Corresponding GenBank entry: AF115442 -------------------------- LOCUS AF115442 2194 bp DNA PLN 10-SEP-1999 DEFINITION Staurastrum punctulatum 18S ribosomal RNA gene, complete sequence. ACCESSION AF115442 NID g5852423 VERSION AF115442.1 GI:5852423 KEYWORDS . SOURCE Staurastrum punctulatum. ORGANISM Staurastrum punctulatum Eukaryota; Viridiplantae; Streptophyta; Charophyta; Zygnematales; Desmidiaceae; Staurastrum. REFERENCE 1 (bases 1 to 2194) AUTHORS Besendahl,A. and Bhattacharya,D. TITLE Evolutionary analyses of small subunit rDNA coding regions and the 1506 group I introns of the Zygnematales (Charophyceae, Streptoophyta) JOURNAL J. Phycol. 35 (3), 560-569 (1999) REFERENCE 2 (bases 1 to 2194) AUTHORS Bhattacharya,D. and Besendahl,A. TITLE Direct Submission JOURNAL Submitted (18-DEC-1998) Biological Sciences, University of Iowa, 239 Biology Building, Iowa City, IA 52242-1324, USA FEATURES Location/Qualifiers source 1..2194 /organism="Staurastrum punctulatum" /isolate="SAG 679-1" /db_xref="taxon:102822" rRNA join(1..1770,2167..2194) /product="18S ribosomal RNA" intron 1771..2166 /note="1506 group I intron" BASE COUNT 551 a 487 c 556 g 590 t 10 others BASE COUNT 91 a 119 c 92 g 109 t 4146 others ORIGIN 1 |gucguaaca aggU||uccg u------(-- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- -uuau|gauc c--------- 121 (((uucucgc cccguuuu-) ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- ---------- 661 ---------- ---------- ---------- ----|----- --ggguu|-- ---------c 721 gagucgc|-a cggaa|Gccu ----|----- ---------- -g-|AGCAuu ---uugucuu 781 cuugc(cgau --)-g-caag aa-------- ---------- -ugcuac--- ---------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 -----aaUGC U|--A----- -----|GUG- CC-------- aa-cguc--- ---------- 1021 --(uuu---- ---------- ---------- ---------u ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 ---------- ---------- ---------- ---------- ---------- ---------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- ---------- -)-------- ---------- 1561 ---------- ---------- ---------- ---------- ---------- ---------- 1621 ----gauguu --G--GUGC| --GA|CGUC- A-U-C|AAAU |UG--C-GGg |AAAGc---| 1681 U-CC------ ---------- ---------- -|ua------ ---------- ---------- 1741 ---------- ---------- ---------- ---------- --------ug ug-------a 1801 uau------- GG-GA|U-AC C|-------- ---------- ---------- ---------- 1861 ---|AAg-c- acgg-c---- -g-gugCACu uuGUGuuccc aaunuU---- ---------- 1921 ---------- ---------- ---------- G-G|----|C n-a-A-c--- (naaugc--- 1981 ---------- ---------- nc-U-c--c- G|-------g uu-c|nGU-A CC--AC-UC- 2041 CC--n-nu-| -cccccaa-- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- --GGA|acca -|aC-UGCA| GCC|-C---- 2221 |ACC------ ------(ccc caacaccuuc aa-------- ---------- ---------- 2281 ---------- ----)|-|-| ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- -------|-- ---------- -GGU|--UC| cGU|--ucc| C--GANU-A| 2521 -AAU-GAA-G --A-aC|G|G UUggggaacc u--------- -(uuuga--- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------aggu 2701 uuuguugcc- |CAA----na |UA-AUC|c| -|GG-----| -----|cccc u--------- 2761 ------gaag gcaaaac--- aaaccuaugc cuccccccun uuuuucc--- ---------- 2821 ---------- ---------- ---------- ---------- ---------- ---------- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---------- ---------- 3121 ---------- ---------- ---------- ---------- ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ---------- ---------- ---------- ---------- ---------- ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- ---------- 4021 ---------- ---------- ---------- ---------- ---------- ---------- 4081 ---------- ---------- ---------- ---------- ---------- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- ---------- ---------- ---------- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------| ---------- ---------| -----cc|G- -||uuc-cgu agguga| // LOCUS Pen.m.1.1 4557 bp RNA RNA 10-SEP-1999 DEFINITION Penium margaritaceum.; . ACCESSION AF1154 0 KEYWORDS . SOURCE Penium margaritaceum. ORGANISM Penium margaritaceum. REFERENCE 1 (bases 1 to 2266) AUTHORS Besendahl,A. and Bhattacharya,D. TITLE and the 1506 group I introns of the Zygnematales (Charophyceae, Streptoophyta) Evolutionary analyses of small subunit rDNA coding regions JOURNAL J. Phycol. 35 (3), 560-569 (1999) STANDARD No information REFERENCE 2 (bases 1 to 2266) AUTHORS Bhattacharya,D. and Besendahl,A. TITLE Direct Submission JOURNAL Submitted (18-DEC-1998) Biological Sciences, University of Iowa, 239 Biology Building, Iowa City, IA 52242-1324, USA STANDARD No information COMMENTS Sequence information (bases 1 to 4557) Corresponding GenBank entry: AF115440 ---------------------------- LOCUS AF115440 2266 bp DNA PLN 10-SEP-1999 DEFINITION Penium margaritaceum 18S ribosomal RNA gene, complete sequence. ACCESSION AF115440 NID g5852422 VERSION AF115440.1 GI:5852422 KEYWORDS . SOURCE Penium margaritaceum. ORGANISM Penium margaritaceum Eukaryota; Viridiplantae; Streptophyta; Charophyta; Zygnematales; Desmidiaceae; Penium. REFERENCE 1 (bases 1 to 2266) AUTHORS Besendahl,A. and Bhattacharya,D. TITLE Evolutionary analyses of small subunit rDNA coding regions and the 1506 group I introns of the Zygnematales (Charophyceae, Streptoophyta) JOURNAL J. Phycol. 35 (3), 560-569 (1999) REFERENCE 2 (bases 1 to 2266) AUTHORS Bhattacharya,D. and Besendahl,A. TITLE Direct Submission JOURNAL Submitted (18-DEC-1998) Biological Sciences, University of Iowa, 239 Biology Building, Iowa City, IA 52242-1324, USA FEATURES Location/Qualifiers source 1..2266 /organism="Penium margaritaceum" /isolate="SAG B 22.82" /db_xref="taxon:102169" rRNA join(1..1776,2239..2266) /product="18S ribosomal RNA" intron 1777..2238 /note="1506 group I intron" BASE COUNT 562 a 500 c 635 g 564 t 5 others BASE COUNT 96 a 135 c 164 g 88 t 4074 others ORIGIN 1 |gucguaaca aggU||u-uu c------(-- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- -----|ugug gucc------ 121 (((uccguu- ---------) ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- ---------- 661 ---------- ---------- ---------- ----|----g ggucaua|-- ---------- 721 ---acac--- -ggaa|Gccu ----|----- ---------- -g-|AGCG-- ----gccccc 781 gaugc(gaug a-)-g-cauu gggggu---- -gugucgucg cccgcacggg acgaacggca 841 cgaagaaag- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 -------cgc u|--a----- -----|GUG- CA-------- ug-g------ ---------- 1021 --(caa---- ---------- ---------- ---------g u--------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 ---------- ---------- ---------- ---------- ---------- ---------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- ---------- -)-------- ---------- 1561 ---------- ---------- ---------- ---------- ---------- ---------- 1621 -------cca --U--GUGC| --GA|UGUC- G-U-C|aaac |UG--C-GGG |GAAA----| 1681 G-UC------ ---------- ---------- -|c------- ---------- ---------- 1741 ---------- ---------- ---------- ----uccucc ucacguuggg aa-------G 1801 Acc------G GG-GC|U-AC C|-------- ---------- ---------- ---------- 1861 ---|AAG-C- Gcgg-C---- --GGCC(-gu ggcggugaaa gucgcugcu- ---------- 1921 ---------- --GGCC--Ga --n-C-G-U- G-G|----|C C-G-G-G-C- (nauugu--- 1981 ---------- --------)- GC-C-C--G- G|-------g ug-c|GGU-A AUA-AC-GC- 2041 CCU-a-UC-| -acggucucg aggg------ ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- --GAC|--ga -|CC-CGCA| GCC|-GA--- 2221 |GCCCCGC-- ------(guu ---------- ---------- ---------- ---------- 2281 ---------- ----)|-|-| ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- -------|-- -------GCG GGGU|--GC| uGU|--uca| CA-GACU-A| 2521 -GAU|GGC-G --A-CN|G|G UCCGU-ccac g--------- -(ugauug-- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------cgug 2701 guACGGGCU- |CAA-GA-UA |UA-GUC|G| -|GG-----| -----|ccgc uccgg----- 2761 ----(-gagc gaaa------ )--------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---------- ---------- 2881 --------cc gg--a-c-g- g|-------- --|--aagcc aaaaccaaca uccaaguucu 2941 uacgcaugg- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---------- ---------- 3121 ---------- ---------- ---------- ---------- ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ---------- ---------- ---------- ---------- ---------- ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- ---------a 4021 -n-|------ ---------- ---------- ---------- ---------- ---------- 4081 ---------- ---------- ---------- ---------- ---------- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- ---------- ---------- ---------- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------| -------uuc a--------| -----CC|G- -||uuc-cgu agguga| // LOCUS Cyl.b.1.1 4557 bp RNA RNA 10-SEP-1999 DEFINITION Cylindrocystis brebissonii.; . ACCESSION AF1154 9 KEYWORDS . SOURCE Cylindrocystis brebissonii. ORGANISM Cylindrocystis brebissonii. REFERENCE 1 (bases 1 to 2167) AUTHORS Besendahl,A. and Bhattacharya,D. TITLE and the 1506 group I introns of the Zygnematales (Charophyceae, Streptoophyta) Evolutionary analyses of small subunit rDNA coding regions JOURNAL J. Phycol. 35 (3), 560-569 (1999) STANDARD No information REFERENCE 2 (bases 1 to 2167) AUTHORS Bhattacharya,D. and Besendahl,A. TITLE Direct Submission JOURNAL Submitted (18-DEC-1998) Biological Sciences, University of Iowa, 239 Biology Building, Iowa City, IA 52242-1324, USA STANDARD No information COMMENTS Sequence information (bases 1 to 4557) Corresponding GenBank entry: AF115439 ---------------------------- LOCUS AF115439 2167 bp DNA PLN 10-SEP-1999 DEFINITION Cylindrocystis brebissonii 18S ribosomal RNA gene, complete sequence. ACCESSION AF115439 NID g5852421 VERSION AF115439.1 GI:5852421 KEYWORDS . SOURCE Cylindrocystis brebissonii. ORGANISM Cylindrocystis brebissonii Eukaryota; Viridiplantae; Streptophyta; Charophyta; Zygnematales; Mesotaeniaceae; Cylindrocystis. REFERENCE 1 (bases 1 to 2167) AUTHORS Besendahl,A. and Bhattacharya,D. TITLE Evolutionary analyses of small subunit rDNA coding regions and the 1506 group I introns of the Zygnematales (Charophyceae, Streptoophyta) JOURNAL J. Phycol. 35 (3), 560-569 (1999) REFERENCE 2 (bases 1 to 2167) AUTHORS Bhattacharya,D. and Besendahl,A. TITLE Direct Submission JOURNAL Submitted (18-DEC-1998) Biological Sciences, University of Iowa, 239 Biology Building, Iowa City, IA 52242-1324, USA FEATURES Location/Qualifiers source 1..2167 /organism="Cylindrocystis brebissonii" /isolate="SAG 615-1" /db_xref="taxon:102167" rRNA join(1..1779,2140..2167) /product="18S ribosomal RNA" intron 1780..2139 /note="1506 group I intron" BASE COUNT 578 a 444 c 564 g 580 t 1 others BASE COUNT 109 a 83 c 100 g 92 t 4173 others ORIGIN 1 |gucguaaca aggU||u-uc a------(-- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- -----|uugc g--------- 121 (((uccuuc- ---------) ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- ---------- 661 ---------- ---------- ---------- ----|----- --ugcaa|-- --------gu 721 uugcuac--- -ugaa|Gccu ----|----- ---------- -u-|AGC--- ---------- 781 ugccu(gaaa --)-a-ggug ---------- -accuugacg acuugauaaa gaaacaaagg 841 ucuuaaau-- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------GC U|--A----- -----|guG- UU-------- ca-c------ ---------- 1021 --(ccu---- ---------- ---------- ---------g a--------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 ---------- ---------- ---------- ---------- ---------- ---------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- ---------- -)-------- ---------- 1561 ---------- ---------- ---------- ---------- ---------- ---------- 1621 -------gug --g--ACGC| --GA|CAUC- A-C-C|aaau |UG--C-GGG |-AAA----| 1681 A-CC------ ---------- ---------- -|c------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- -------uaa ag-------C 1801 UU-------- UG-AC|U-AC C|-------- ---------- ---------- ---------- 1861 ---|AAG-U- aCAC-g---- -u-cc-(gaa a--------- ---------- ---------- 1921 ---------- -)gga---GU --G-c-A-U- G-G|----|C CaG-G-G-U- (aaug----- 1981 ---------- --------)- AC-CuC--G- G|-------G UA-U|GGU-A Aua-AC-GU- 2041 CA--A-AG-| -augaaacaa ug-------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- --GGU|--aa -|UC-CGCA| GCC|-AA--- 2221 |GUCC----- ------(uug cuugucau-- ---------- ---------- ---------- 2281 ---------- ----)|-|-| ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- -------|-- ---------- GGAU|--GC| cGU|--uca| CA-GACU-A| 2521 -AAU|GGU-G --G-UG|G|g uuugc----- ---------- ---gaa---- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 --gcaagcU- |UAA-GA-UA |UA-UUC|G| -|GG-----| c----|cucu cg-------- 2761 ----(-gaaa ccaaaa---- )--------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---------- ---------- 2881 ---------- -g--g-g-g- g|-------- --|--cagu- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---------- ---------- 3121 ---------- ---------- ---------- ---------- ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ---------- ---------- ---------- ---------- ---------- ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- ---------- 4021 ---|------ ---------- ---------- ---------- ---------- ---------- 4081 ---------- ---------- ---------- ---------- ---------- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- ---------- ---------- ---------- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------| -------uuc n--------| -----CC|G- -||uuc-cgu agguga| // LOCUS Clo.l.1.1 4557 bp RNA RNA 10-SEP-1999 DEFINITION Closterium littorale.; . ACCESSION AF1154 8 KEYWORDS . SOURCE Closterium littorale. ORGANISM Closterium littorale. REFERENCE 1 (bases 1 to 2207) AUTHORS Besendahl,A. and Bhattacharya,D. TITLE and the 1506 group I introns of the Zygnematales (Charophyceae, Streptoophyta) Evolutionary analyses of small subunit rDNA coding regions JOURNAL J. Phycol. 35 (3), 560-569 (1999) STANDARD No information REFERENCE 2 (bases 1 to 2207) AUTHORS Bhattacharya,D. and Besendahl,A. TITLE Direct Submission JOURNAL Submitted (18-DEC-1998) Biological Sciences, University of Iowa, 239 Biology Building, Iowa City, IA 52242-1324, USA STANDARD No information COMMENTS Sequence information (bases 1 to 4557) Corresponding GenBank entry: AF115438 --------------------------- LOCUS AF115438 2207 bp DNA PLN 10-SEP-1999 DEFINITION Closterium littorale 18S ribosomal RNA gene, complete sequence. ACCESSION AF115438 NID g5852420 VERSION AF115438.1 GI:5852420 KEYWORDS . SOURCE Closterium littorale. ORGANISM Closterium littorale Eukaryota; Viridiplantae; Streptophyta; Charophyta; Zygnematales; Desmidiaceae; Closterium. REFERENCE 1 (bases 1 to 2207) AUTHORS Besendahl,A. and Bhattacharya,D. TITLE Evolutionary analyses of small subunit rDNA coding regions and the 1506 group I introns of the Zygnematales (Charophyceae, Streptoophyta) JOURNAL J. Phycol. 35 (3), 560-569 (1999) REFERENCE 2 (bases 1 to 2207) AUTHORS Bhattacharya,D. and Besendahl,A. TITLE Direct Submission JOURNAL Submitted (18-DEC-1998) Biological Sciences, University of Iowa, 239 Biology Building, Iowa City, IA 52242-1324, USA FEATURES Location/Qualifiers source 1..2207 /organism="Closterium littorale" /isolate="SAG 611-7" /db_xref="taxon:102166" rRNA join(1..1772,2180..2207) /product="18S ribosomal RNA" intron 1773..2179 /note="1506 group I intron" BASE COUNT 552 a 488 c 588 g 579 t BASE COUNT 90 a 122 c 122 g 98 t 4125 others ORIGIN 1 |gucguaaca aggu||u-uc gcugguc(-- ---------- ---------- ---------- 61 ---------- ---------- ---------- ----cuucuu gcauc|cgcc au-------- 121 (((cucuucc a--------) ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- ---------- 661 ---------- ---------- ---------- ----|----- -guggug|-- -----ugguu 721 cga-gaccua cggaa|gccu ----|----- ---------- -g-|AGUggg ------uc-c 781 cgcu-(ccau gaa-a-gcgg ag-------- ---------- ---------- ---------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 -----cccgc u|--A----- -----|GUG- UC-------- au-guu---- ---------- 1021 --(gag---- ---------- ---------- ---------a ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 ---------- ---------- ---------- ---------- ---------- ---------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- ---------- -)-------- ---------- 1561 ---------- ---------- ---------- ---------- ---------- ---------- 1621 -----gacgu --G--ACGC| --GA|ccuc- c-u-c|caau |UG--C-GGG |AAAC----| 1681 G-CC------ ---------- ---------- -|a------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- --------ga au-------G 1801 UGG--ccauc UG-GG|U-AC C|-------- ---------- ---------- ---------- 1861 ---|AAG-C- GCgg-u---- -gguaagucu ucuuuccaag aggcuugccu a--------- 1921 ---------- ---------- --G-C-G-U- G-G|----|C C-A-A-G-C- (cagaga--- 1981 ---------- --------)- GC-U-U--G- G|-------g ua-u-GGU-A AAA-AC-CC- 2041 CAaaCCAC-| -uu------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- --GGC|-caa -|CC-UGCA| GCC|-AA--- 2221 |GCCUCGG-- ------(ucu u--------- ---------- ---------- ---------- 2281 ---------- ----)|-|-| ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- -------|-- -------CCG AGGU|--GG| uGU|-ucca| CA-GACU-A| 2521 -GAU|uac-c --a-cg|G|G Caagccuguu uuacgcagc- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---gcuuCU- |CAA-GA-UA |UA-GUC|G| -|GG-----| -----|cucg ccc------- 2761 ----(-ucg- ---------- )--------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---------- ---------- 2881 --|------- gg--g-c-g- a|-------- --|--gauca gcuucuccgc aagagau|-- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---------- ---------- 3121 ---------- ---------- ---------- ---------- ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ---------- ---------- ---------- ---------- ---------- ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- ---------- 4021 ---------- ---------- ---------- ---------- ---------- ---------- 4081 ---------- ---------- ---------- ---------- ---------- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- ---------- ---------- ---------- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------| -------uuc a--------| -----CC|G- -||uuc-cgu agguga| // LOCUS Clo.e.1.1 4557 bp RNA RNA 10-SEP-1999 DEFINITION Closterium ehrenbergii.; . ACCESSION AF1154 7 KEYWORDS . SOURCE Closterium ehrenbergii. ORGANISM Closterium ehrenbergii. REFERENCE 1 (bases 1 to 2259) AUTHORS Besendahl,A. and Bhattacharya,D. TITLE (Charophyceae, Streptoophyta) Evolutionary analyses of small subunit rDNA coding regions and the 1506 group I introns of the Zygnematales JOURNAL J. Phycol. 35 (3), 560-569 (1999) STANDARD No information REFERENCE 2 (bases 1 to 2259) AUTHORS Bhattacharya,D. and Besendahl,A. TITLE Direct Submission JOURNAL Submitted (18-DEC-1998) Biological Sciences, University of Iowa, 239 Biology Building, Iowa City, IA 52242-1324, USA STANDARD No information COMMENTS Sequence information (bases 1 to 4557) Corresponding GenBank entry: AF115437 ----------------------------------- LOCUS AF115437 2259 bp DNA PLN 10-SEP-1999 DEFINITION Closterium ehrenbergii 18S ribosomal RNA gene, complete sequence. ACCESSION AF115437 NID g5852419 VERSION AF115437.1 GI:5852419 KEYWORDS . SOURCE Closterium ehrenbergii. ORGANISM Closterium ehrenbergii Eukaryota; Viridiplantae; Streptophyta; Charophyta; Zygnematales; Desmidiaceae; Closterium. REFERENCE 1 (bases 1 to 2259) AUTHORS Besendahl,A. and Bhattacharya,D. TITLE Evolutionary analyses of small subunit rDNA coding regions and the 1506 group I introns of the Zygnematales (Charophyceae, Streptoophyta) JOURNAL J. Phycol. 35 (3), 560-569 (1999) REFERENCE 2 (bases 1 to 2259) AUTHORS Bhattacharya,D. and Besendahl,A. TITLE Direct Submission JOURNAL Submitted (18-DEC-1998) Biological Sciences, University of Iowa, 239 Biology Building, Iowa City, IA 52242-1324, USA FEATURES Location/Qualifiers source 1..2259 /organism="Closterium ehrenbergii" /isolate="SAG B131-80" /db_xref="taxon:102165" rRNA join(1..1783,2232..2259) /product="18S ribosomal RNA" intron 1784..2231 /note="1506 group I intron" BASE COUNT 545 a 533 c 631 g 546 t 4 others BASE COUNT 100 a 128 c 146 g 95 t 4088 others ORIGIN 1 |gucguaaca aggU||u-gc c------(-- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- -----|uguc gug------- 121 (((ugaggcc cuuccgcggg au-------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- ---------- 661 ---------- ---------- ---------- ----|----- cacgaca|-- ---------- 721 ---------- cggaa|Gccu u---|----- ---------- ---|AGCG-- ------gcc- 781 cucg-(gaau --)-c-gug- ---------a gccgagggug aauccaccgu gaggggauug 841 aaa------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 -------UGC U|--A----- -----|GUU- UUu------- GG-ucgagga a--------- 1021 --(ggc---- ---------- ---------- ---------c a--------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 ---------- ---------- ---------- ---------- ---------- ---------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- ---------- -)-------- --u-uc---- 1561 ---------- ---------- ---------- ---------- ---------- ---------- 1621 ----cucuCC --G--AAGC| --GA|CACC- G-U-C|CAAU |UG--C-GGG |GAGU----| 1681 U-CU------ ---------- ---------- -|c------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- --------GG GA|------G 1801 CC-------- UUuGC|U-AC C|-------- ---------- ---------- ---------- 1861 ---|AAG-C- GAuG-G---- ---GG-(aag aaggguugag gauugcucuc gaccccuuca 1921 ---------- -)-CC---CC --U-C-G-U- G-G|-ccg|A g-cuc-g-u- (gugcauu-- 1981 ---------- --------)- ac-gcg--cg U|gcaang-G UA-U|GGU-A ACA-AU-GCc 2041 AA--G-GC-| -G-------- ------|gua gcg------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- --ANA|-uca -|UC-CGCA| GCC|-AAcu- 2221 |CGGGCUG-- ------(auc a--------- ---------- ---------- ---------- 2281 ---------- ----)|-|-| ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- -------|-- -------CAG CCCG|--AA| GGC|auuca| CA-GACU-G| 2521 -CAC|GGC-G --G-UG|G|G UUGU-CGUGC ---------- -(cuugu--- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- --------GC 2701 AcCGCGGCC- |UAA-GA-UA |CA-GUC|G| -|Gc-----| aa---|gcga ng-------- 2761 ----(-GAAA ---------- )--------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---------- ---------- 2881 --|------- cc--c-c-g- c|-------- --|-uuc-ac aauggaua-- --cgca---- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---------- ---------- 3121 ---------- ---------- ---------- ---------- ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ---------- ---------- ---------- ---------- ---------- ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- -------gan 4021 -u-|------ ---------- ---------- ---------- ---------- ---------- 4081 ---------- ---------- ---------- ---------- ---------- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- ---------- ---------- ---------- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------| -------uuc a--------| -----cC|G- -||uuc-cgu agguga| // LOCUS Zyg.c.1.1 4557 bp RNA RNA 25-JAN-1994 DEFINITION Zygnemopsis circumcarinata. ACCESSION No information KEYWORDS No information. SOURCE Zygnemopsis circumcarinata. ORGANISM Zygnemopsis circumcarinata. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 4557) Corresponding GenBank entry: X79495 BASE COUNT 172 a 151 c 142 g 135 t 3957 others ORIGIN 1 |~~~~~aaca aggU||uuu- -------(-- --gcaaaaca ------gcca aaacauaucc 61 uuccgcacgu ucgacacaug cu)------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- ---------- 661 ---------- ---------- ---------- ---------- -------|-- ---------- 721 ---------- --gaa|Gccu u---|----- ---------- ---|AGCU-- ---------- 781 gccc-(gaaa --)-g-uga- ---------c cuu------- cgcgacuuuc uc-------- 841 --ccaaaaca acuc-caa-a aaaaaggaaa ggucuuaaa- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 -------AGC U|--A----- -----|GUG- CC-------- ac-------- ---------- 1021 --(cac---- ---------- ---------- ---------u augau----- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 ---------- ---------- ---------- ---------- ---------- ---------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- ---------- -)-------- ---------- 1561 ---------- ---------- ---------- ---------- ---------- ---------- 1621 --------gu --G--GCGC| --GA|CACC- G-C-C|AAAU |UG--C-GGG |AAAU----| 1681 C-CC------ ---------- ---------- -|U------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- --------AA AA|------c 1801 UU-------- UG-AC|U-AC C|-------- ---------- ---------- ---------- 1861 ---|AAG-U- AC-A-Cuu-- -G-UC-(GAA A--------- ---------- ---------- 1921 ---------- -)-GAC--GU --G-U-A-U- G-G|----|C C-A-G-G--- (gcaacga-- 1981 ---------- --------)- -C-C-U-CG- G|-------G UA-U|GGU-A AUA-AC-GU- 2041 CA--A-Aa-| --uaaaauug guuggugaaa acguggugug uguc--gucg uucuu-gua- 2101 --cucgagga cccc-acacu ccuuuucgaa agggcggguc ucgaggcaca cacugcaaua 2161 cucuauacca cacacugacc aaaacau--- --GGG|-UUA -|UC-CGCA| GCC|-AA--- 2221 |GUCC----- ------(--- ---------- ---------- ---------- ---------- 2281 ---------- ----)|-|C| UA----|cca ---------- ---------- ---------- 2341 (u-aca-uug cuauuaacug cagugc---- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- -------|-- 2461 ---------u gg-|G|G|-- ---------- GGAC|--GC| CGU|--UCA| CA-GACU-A| 2521 -GAC|GGC-G --G-UG|G|G UCuuuuc--- ---------- -(aaacg--- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 gaaagGGCU- |UAA-GA-UA |UA-GUC|G| -|GG-----| -----|ccuc uucg------ 2761 ----(-GAGA ---------- )--------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---------- ---------- 2881 --|-----cg aa--g-a-g- g|-------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---------- ---------- 3121 ---------- ---------- ---------- ---------- ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ---------- ---------- ---------- ---------- ---------- ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- ---------- 4021 ---------- ---------- ---------- ---------- ---------- ---------- 4081 ---------- ---------- ---------- ---------- ---------- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- ---------- ---------- ---------- ---------- ---------- 4261 ---------- ---------- -gacgucauu gccuuuuacc uuugguucac aaggaa---- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 --------ga --agggcagg cuuuaauca| -----CC|G- -||uuc-cgu a~~~~~| // LOCUS Pla.b.1.3 4557 bp RNA RNA 21-NOV-1995 DEFINITION Plasmodiophora brassicae.. ACCESSION No information KEYWORDS No information. SOURCE Plasmodiophora brassicae. ORGANISM Plasmodiophora brassicae. REFERENCE 1 (bases 1 to 2259) AUTHORS Castlebury,L.A. and Domier,L.L. TITLE Small subunit ribosomal RNA genes of Plasmodiophora brassicae contain three introns JOURNAL Unpublished STANDARD No information COMMENTS Sequence information (bases 1 to 4557) Corresponding GenBank entry: U18981 LOCUS PBU18981 3026 bp DNA INV 21-NOV-1995 DEFINITION Plasmodiophora brassicae small subunit ribosomal RNA gene. ACCESSION U18981 NID g1066346 VERSION U18981.1 GI:1066346 KEYWORDS . SOURCE Plasmodiophora brassicae. ORGANISM Plasmodiophora brassicae Eukaryota; Plasmodiophorida; Plasmodiophoridae; Plasmodiophora. REFERENCE 1 (bases 1 to 3026) AUTHORS Castlebury,L.A. and Domier,L.L. TITLE Small subunit ribosomal RNA genes of Plasmodiophora brassicae contain three introns JOURNAL Unpublished REFERENCE 2 (sites) AUTHORS Castlebury,L.A. and Domier,L.L. TITLE Small subunit ribosomal RNA gene phylogeny of Plasmodiophora brassicae JOURNAL Unpublished REFERENCE 3 (bases 1 to 3026) AUTHORS Castlebury,L.A. TITLE Direct Submission JOURNAL Submitted (21-DEC-1994) Lisa A. Castlebury, National Center for Toxicological Research, Division of Microbiology, 3900 NCTR Drive, Jefferson, AR 72079, USA FEATURES Location/Qualifiers source 1..3026 /organism="Plasmodiophora brassicae" /specific_host="Brassica spp." /db_xref="taxon:37360" /lab_host="Brassica pekinensis (Lour.) Rupr." /dev_stage="resting spores" primer_bind complement(1..21) /citation=[1] /citation=[2] exon 1..566 /citation=[1] /citation=[2] rRNA join(1..566,955..1582,1966..2556,2999..3026) /evidence=experimental /product="small subunit ribosomal RNA" intron 567..954 /citation=[1] exon 955..1582 /citation=[1] /citation=[2] intron 1583..1965 /citation=[1] exon 1966..2556 /citation=[1] /citation=[2] intron 2557..2998 /citation=[1] exon 2999..3026 /citation=[1] /citation=[2] primer_bind 3003..3026 /citation=[1] /citation=[2] BASE COUNT 757 a 680 c 843 g 744 t 2 others BASE COUNT 106 a 119 c 136 g 106 t 4090 others ORIGIN 1 |gucguaaca aggU||uucc -------(-- --guagcguc gucgucggcg accgcuacag 61 gagcuggucc uuccacacgg ucaucgcccg ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- ---------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 -------|-- -ggaa|Gccu u---|----- ---------- ---|AGCA-- ---------- 781 gccg-(gaaa --)-c-ggu- ---------g cuga-----a cgcgacuuug uc-------- 841 --aaaaaaca acga-g---- ------ucag cuugaa---- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 -------UGC U|--A----- -----|GUG- UG-------- ---------- ---------- 1021 --(ucg---- ---------- ---------- ---------c gcgcc----- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 ---------- ---------- ---------- ---------- ---------- ---------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- ---------- -)-------- ---------- 1561 ---------- ---------- ---------- ---------- ---------- ---------- 1621 ---------- --U--AUGC| --GA|CAC-- G-U-U|AAAU |UG--C-GGG |gac-----| 1681 C-CU------ ---------- ---------- -|-------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- --------GA AG|------C 1801 UU-------- Gu--C|U-GC C|-------- ---------- ---------- ---------- 1861 ---|------ ---------- ---------- ------aauc gcccugg--- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- -|-------G UA-U|GGU-A ACA-AC-GG- 2041 AC--A-AG-| -g-------- ------|aug ---------- ---------- --(uu-a--- 2101 ----)----- ---------- ------uaua u|-------- ---------- ---------- 2161 ---------- ---------- ---------- --GGG|-UGA -|UC-CGCA| GCC|-AA--- 2221 |gUCC----- ------(--- ---------- ---------- ---------- ---------- 2281 ---------- ----)|-|U| AC----|guc gaau------ ---------- ---------- 2341 (c-gcg-cau ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- -------|-- 2461 ----guu-cg au-|A|U|-- ---------- GGAa|--cg| GGU|--UCA| CA-GACU-A| 2521 -GAU|AGC-a --G-UG|G|G UGgcaca--- ---------- -(cacg---- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 uguguCGCU- |UAA-GA-UA |UA-GUC|G| -|GU-----| -----|cucg ugcc------ 2761 ----(-gaaa ---------- )--------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---------- ---------- 2881 --------cg ca--c-g-g- g|-------- ----gaggug aucgacgcuc uuucgugucg 2941 cucguauucg acaacugcac agugugcguc acaucgccau c--------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---------- ---------- 3121 ---------- ---------- ---------- ---------- ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ---------- ---------- ---------- ---------- ---------- ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- ---------- 4021 ---------- ---------- ---------- ---------- ---------- ---------- 4081 ---------- ---------- ---------- ---------- ---------- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- ---------- ---------- ---------- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- -----augau g--------| -----AC|G- -||uuc-cgu agguga| // LOCUS Ban.f.1.2 4557 bp RNA RNA ~?~???? DEFINITION Bangia fuscopurpurea. ACCESSION No information KEYWORDS No information. SOURCE Bangia fuscopurpurea. ORGANISM Bangia fuscopurpurea. REFERENCE 1 (bases 1 to 2259) AUTHORS Debashish and Mariana JOURNAL No information STANDARD No information COMMENTS Sequence information (bases 1 to 4557) Corresponding GenBank entry: AF342745 BASE COUNT 150 a 124 c 157 g 118 t 4008 others ORIGIN 1 |gucguaaca aggU||uu-- -------(-- ---------- ---------- ---------- 61 ---------- ---------- --)|------ ---------- --gcu|---- ---------( 121 -------)-- ---------| --[aaggcaa cag---(aag u-)------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- ---------- 661 ---------- --------cu ugaauggccu u]--|----- -------|cu guaggaagcg 721 |cuuacc|-- --gaa|Gccu u---|----- ---------- ---|UGCA-- ---------- 781 gccc-(gaaa --)-g-ggu- ---------c gcgau----- cgcgacuuua c--------- 841 --uaaau-aa cga------- -----aucgc cuuaaa---- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 -------UGC A|--A----- -----|GUG- GC-------- ---------- ---------- 1021 --(g------ ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ----ggcacu augau(ucag ---------- 1141 -----)auca ucaagcca-- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 ---------- ---------- ---------- ---------- ---------- ---------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- ---------- -)-------- ---------- 1561 ---------- ---------- ---------- ---------- ---------- ---------- 1621 ---------- --G--CUGC| --GA|CUUU- C-U-C|AAAU |UG--C-GGG |AACA----| 1681 C-CC------ ---------- ---------- -|Ua------ ---------- ---------- 1741 ---------- ---------- ---------- ---------- --------AA GC|------C 1801 GA-------- UA-GA|U-AC C|-------- ---------- ---------- ---------- 1861 ---|GCG-G- CC-G-C---- -G-UG-(gau uaa------- ---------- ---------- 1921 ---------- -)-CAC--GU --A-G---C- G-C|agca|G C-A-G-g-gg (uagug---- 1981 ---------- --------)c cc-U-U--G- U|-------G GA-U|GGU-A AAA-AC-UC- 2041 UC--U-CG-| -gaua----- ------|uga gucac----- ---------- --(gcac--- 2101 ---)------ ---------a ugacuaagaa u|-------- ---------- ---------- 2161 ---------- ---------- ---------- --GGG|-CAA -|UC-CGCA| GCC|-AAg-- 2221 |CUCC----- ------(--- ---------- ---------- ---------- ---------- 2281 ---------- ----)|-|a| aua---|ccu ggc------- ---------- ---------- 2341 (u-uu----- ---------- ---------- ---------- ---------- ---------- 2401 -------)-- ---------- ---------- ---------- ---------- -------|-- 2461 -----gu-cg gg-|u|-|-- ---------- GGAG|--AA| GGU|--UCA| CA-GACU-G| 2521 -UAA|GGG-A --A-GG|G|G UGgagc---- ---------- -(cacaauu- gug------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------) ---------- 2701 -gcacuGCU- |UAA-GA-GA |CA-GUC|G| -|GU-----| c----|cccu gc-------- 2761 ----(-GAAA ---------- )--------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---------- ---------- 2881 --|------- gc--a-g-u- g|-------- --|-uuccgu gg-------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- -|------ag gau|ggguc- uugc(--gaa 3121 g--------- ---------- ---------- ---------- ---------- ---------- 3181 ---------- ---------- -----)guaa g-aacc|--- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ---------- ---------- ---------- ---------- ---------- ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- --|-agaga- g--|------ ---------- --c---cacg 4021 gga|------ --------|g cuucuc---- ---------- ---------- ---------( 4081 uucg------ ---------- ---------- ---------- ---------- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- --------|- --------aa g-aagu|--- ---------- ------gggu 4261 aguuuc(caa auuaac---- ---------- ---------- )gaaaucauu a--------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------| -----AC|G- -||uuc-cgu agguga| // LOCUS Por.s.1.1 4557 bp RNA RNA 26-JAN-1993 DEFINITION Porphyra spiralis var. amplifolia str. PSA-B/Ubatuba. ACCESSION No information KEYWORDS No information. SOURCE Porphyra spiralis var. amplifolia str. PSA-B/Ubatuba. ORGANISM Porphyra spiralis var. amplifolia. REFERENCE 1 (bases 1 to 2259) AUTHORS Oliveira,M.C.;Ragan,M.A. TITLE Variant forms of a group I intron in nuclear small-subunit rRNA... JOURNAL Mol. Biol. Evol. (1994) In press STANDARD No information COMMENTS Sequence information (bases 1 to 4557) Corresponding GenBank entry: L26175 BASE COUNT 197 a 181 c 226 g 165 t 3788 others ORIGIN 1 |gucguaaca aggU||uuc- -------(-- ---------- ---------- ---------- 61 ---------- ---------- --)|------ ---------- -cgaa|---- ---------( 121 -------)-- ---------| --[aggg(gc aaagaggacu agugacucau ccaaagacuu 181 acgagaugcu u--------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- --cucuaacu gcuccaguac agcuugcugg acgugaugga 541 gcaagaacuu cucguaagcg ugggugggcg cgacguccau gguaaugaga ---------- 601 ---------- ---------- ---------- ---------- ---------- ---------- 661 ---------c cuucucugca ggacauaccc u]--|----- -------|-- ---------- 721 |---acu|-- --gaa|Gccu u---|----- ---------- ---|UGCG-- ---------- 781 gccc-(gaaa --)-g-ggu- ---------g cgcggu---- cacgacauu- ---------- 841 ---aaau-aa aga------- ----gccgug uucaa----- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 -------CGC A|--A----- -----|GUG- AC-------- ---------- ---------- 1021 --(g------ ---------- ---------- ---------- ---------- ---------- 1081 ---------g ggagagagga cugaaaguga cggggaaaag ucgcu(uuug uu-------- 1141 -----)ggcg acuuucccga gugggggaug ccaagguauu auaucgcggu auauauauau 1201 cccacaauag acgacgcagu caguccgaaa accca----- ---------- ---------- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 ---------- ---------- ---------- ---------- ---------- ---------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- ---------- -)-------- ---------- 1561 ---------- ---------- ---------- ---------- ---------- ---------- 1621 ---------- --G--UUGC| --UA|CCUU- U-U-C|AAAU |UG--C-GGG |AAUC----| 1681 C-CC------ ---------- ---------- -|Ua------ ---------- ---------- 1741 ---------- ---------- ---------- ---------- --------AG AG|------C 1801 CCa------- UC-AC|U-AC C|-------- ---------- ---------- ---------- 1861 ---|GCG-G- CC-G-U-U-- -G-UG-(gaa aa-------- ---------- ---------- 1921 ---------- -)-CAC--UC --G-G---U- G-C|agca|G G-C-G-a-gg (uaguu---- 1981 ---------- --------)c cc-c-G--C- U|-------G GA-U|GGU-A AUA-AG-GU- 2041 GAu-G-GG-| -Auu------ ------|-gu -cuc------ ---------- --(uaga--- 2101 ---)------ ---------- gacuu-gcaa u|-------- ---------- ---------- 2161 ---------- ---------- ---------- --GGG|-CAA -|UC-CGCA| GCC|-AAg-- 2221 |UCCC----- ------(--- ---------- ---------- ---------- ---------- 2281 ---------- ----)|-|u| gu----|--- ---------- ---------- ---------- 2341 (c-aa----- ---------- ---------- ---------- ---------- ---------- 2401 -------)-- ---------- ---------- ---------- ---------- -------|-- 2461 ---------- ---|a|u|-- ---------- GGGA|--AA| GGU|--UCA| CA-GACU-G| 2521 -UAA|GGA-A --A-GG|G|G UGccgc---- ---------- -(uuccuauu ac-------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------) ---------- 2701 -gcggCGCU- |UAA-GA-GA |CA-GUC|G| -|GU-----| c----|cccu gc-------- 2761 ----(-GAAA ---------- )--------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---------- ---------- 2881 --|------- gc--a-g-a- g|-------- --|-ucccga ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- -|-auuggag gaa|aaggc- ccau(--uaa 3121 aa-------- ---------- ---------- ---------- ---------- ---------- 3181 ---------- ---------- -----)gugg g-cuuu|--- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ---------- ---------- ---------- ---------- ---------- ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- --|-ggaga- g--|------ ---------- --c---cucg 4021 gga|------ --------|g gcc------- ---------- ---------- ---------( 4081 agagaggaaa ggcuccgcgc ccuccucacu c--------- ---------- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- --------|- ---------- --ggcu|--- ---------- -------ggg 4261 uucaag(ucc ---------- ---------- ---------- )uuugacuuu ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------| -----AU|G- -||uuc-cgu agguga| // LOCUS Por.s.2.1 4557 bp RNA RNA 26-JAN-1993 DEFINITION Porphyra spiralis var. amplifolia str. PSA-D/Sao Sebastiao. ACCESSION No information KEYWORDS No information. SOURCE Porphyra spiralis var. amplifolia str. PSA-D/Sao Sebastiao. ORGANISM Porphyra spiralis var. amplifolia. REFERENCE 1 (bases 1 to 2259) AUTHORS Oliveira,M.C.;Ragan,M.A. TITLE Variant forms of a group I intron in nuclear small-subunit rRNA... JOURNAL Mol. Biol. Evol. (1994) In press STANDARD No information COMMENTS Sequence information (bases 1 to 4557) Corresponding GenBank entry: L26176 BASE COUNT 232 a 217 c 274 g 210 t 3624 others ORIGIN 1 |gucguaaca aggU||uuc- -------(-- ---------- ---------- ---------- 61 ---------- ---------- --)|------ ---------- -cgaa|---- ---------( 121 -------)-- ---------| --[aggg(gc aaagaggacu agugacucau ccaaagacuu 181 acgagaugcu uuauuagacg cacugcgugu augaagacac uug-aacucc gggugguuac 241 gcaugagacg gcaguagaug cgacuuuugu ucaggucgcc ggacuccaac guuaaaugcg 301 ccuuguugac acacuuagcg uuguggcacg ugugg----- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 --cccaugga gugcgaaugc uucucuaacu gcuccaguac agcuugcugg acgugaugga 541 gcaagaacuu cucguaagcg ugggugggcg cgacguccau gguaaugaga ---------- 601 ---------- ---------- ---------- ---------- ---------- ---------- 661 ---------c cuucucugca ugacauaccc u]--|----- -------|-- ---------- 721 |---acu|-- --gaa|Gccu u---|----- ---------- ---|UGCG-- ---------- 781 gccc-(gaaa --)-g-ggu- ---------g cgcggu---- cacgacauu- ---------- 841 ---aaau-aa aga------- ----gccgug uucaa----- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 -------CGC A|--A----- -----|GUG- AC-------- ---------- ---------- 1021 --(g------ ---------- ---------- ---------- ---------- ---------- 1081 --------gg ggagagagga cugaaaguga cggggaaaag ucgcu(uuug uu-------- 1141 -----)ggcg acuuucccga gugggggaug ccaagguauu auaucgcggu auauauauau 1201 ccuacaauag acgacgcagu caguccgaaa accca----- ---------- ---------- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 ---------- ---------- ---------- ---------- ---------- ---------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- ---------- -)-------- ---------- 1561 ---------- ---------- ---------- ---------- ---------- ---------- 1621 ---------- --G--UUGC| --UA|CCUU- U-U-C|AAAU |UG--C-GGG |AAUC----| 1681 C-CC------ ---------- ---------- -|Ua------ ---------- ---------- 1741 ---------- ---------- ---------- ---------- --------AG AG|------C 1801 CCa------- UC-AC|U-AC C|-------- ---------- ---------- ---------- 1861 ---|GCG-G- CC-G-U-U-- -G-UG-(gaa aa-------- ---------- ---------- 1921 ---------- -)-CAC--UC --G-G---U- G-C|agca|G G-C-G-a-gg (uaguu---- 1981 ---------- --------)c cc-c-G--C- U|-------G GA-U|GGU-A AUA-AG-GU- 2041 GAu-G-GG-| -Auu------ ------|-gu -cuc------ ---------- --(uaga--- 2101 ---)------ ---------- gacuu-gcaa u|-------- ---------- ---------- 2161 ---------- ---------- ---------- --GGG|-CAA -|UC-CGCA| GCC|-AAg-- 2221 |UCCC----- ------(--- ---------- ---------- ---------- ---------- 2281 ---------- ----)|-|u| gu----|--- ---------- ---------- ---------- 2341 (c-aa----- ---------- ---------- ---------- ---------- ---------- 2401 -------)-- ---------- ---------- ---------- ---------- -------|-- 2461 ---------- ---|a|u|-- ---------- GGGA|--AA| GGU|--UCA| CA-GACU-G| 2521 -UAA|GGA-A --A-GG|G|G UGccgc---- ---------- -(uuccuauu ac-------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------) ---------- 2701 -gcggCGCU- |UAA-GA-GA |CA-GUC|G| -|GU-----| c----|cccu gc-------- 2761 ----(-GAAA ---------- )--------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---------- ---------- 2881 --|------- gc--a-g-a- g|-------- --|-ucccga ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- -|-auuggag gaa|aaggc- ccau(--uaa 3121 aa-------- ---------- ---------- ---------- ---------- ---------- 3181 ---------- ---------- -----)gugg g-cuuu|--- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ---------- ---------- ---------- ---------- ---------- ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- --|-ggaga- g--|------ ---------- --c---cucg 4021 gga|------ --------|g gcc------- ---------- ---------- ---------( 4081 agagaggaaa ggcuccgcgc ccuccucacu c--------- ---------- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- --------|- ---------- --ggcu|--- ---------- -------ggg 4261 uucaag(ucc ---------- ---------- ---------- )uuugacuuu ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------| -----AU|G- -||uuc-cgu agguga| // LOCUS Por.s.3.1 4557 bp RNA RNA 26-JAN-1993 DEFINITION Porphyra spiralis var. amlifolia str. PSA-R/Ilha do Cardoso. ACCESSION No information KEYWORDS No information. SOURCE Porphyra spiralis var. amlifolia str. PSA-R/Ilha do Cardoso. ORGANISM Porphyra spiralis var. amlifolia. REFERENCE 1 (bases 1 to 2259) AUTHORS Oliveira,M.C.;Ragan,M.A TITLE Variant forms of a group I intron in nuclear small-subunit rRNA... JOURNAL Mol. Biol. Evol. (1994) In press STANDARD No information COMMENTS Sequence information (bases 1 to 4557) Corresponding GenBank entry: L26177 BASE COUNT 265 a 258 c 319 g 238 t 3477 others ORIGIN 1 |gucguaaca aggU||uuc- -------(-- ---------- ---------- ---------- 61 ---------- ---------- --)|------ ---------- -cgaa|---- ---------( 121 -------)-- ---------| --[aggg(gc aaagaggacu agugacucau ccaaagacuu 181 acgagaugcu uuauuagacg cacugcgugu augaagacac uuggaacucc gggugguuac 241 gcaugagacg gcaguagaug cgacuuuugu ucaggucgcc ggacuccaac guuaaaugcg 301 ccuuguugac acacuuagcg uuguggcacg ugugggacgc cucuucacca gggagaggga 361 gacgcucagu cgcugccacc gcgacaauga uguggcaaua guacuucgug ccuugauagc 421 gcaguuggac guaaccgcca gagaccuuag caggggcgua guccgucaca augcagccgu 481 ucuccaugga gugcgaaugc uucucuaacu gcuccaguac agcuugcugg acgugaugga 541 gcaagaacuu cucguaagcg ugggugggcg cgacguccau gguaaugaga ---------- 601 ---------- ---------- ---------- ---------- ---------- ---------- 661 ---------c cuucucugca ggacauaccc u]--|----- -------|-- ---------- 721 |---acu|-- --gaa|Gccu u---|----- ---------- ---|UGCG-- ---------- 781 gccc-(gaaa --)-g-ggu- ---------g cgcggu---- cacgacauu- ---------- 841 ---aaau-aa aga------- ----gccgug uucaa----- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 -------CGC A|--A----- -----|GUG- AC-------- ---------- ---------- 1021 --(g------ ---------- ---------- ---------- ---------- ---------- 1081 ---------g ggagagagga cugaaaguga cggggaaaag ucgcu(uuug uu-------- 1141 -----)ggcg acuuucccga gugggggaug ccaagguauu auaucgcggu auauauauau 1201 ccuacaauag acgacgcagu caguccgaaa accca----- ---------- ---------- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 ---------- ---------- ---------- ---------- ---------- ---------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- ---------- -)-------- ---------- 1561 ---------- ---------- ---------- ---------- ---------- ---------- 1621 ---------- --G--UUGC| --UA|CCUU- U-U-C|AAAU |UG--C-GGG |AAUC----| 1681 C-CC------ ---------- ---------- -|Ua------ ---------- ---------- 1741 ---------- ---------- ---------- ---------- --------AG AG|------C 1801 CCa------- UC-AC|U-AC C|-------- ---------- ---------- ---------- 1861 ---|GCG-G- CC-G-U-U-- -G-UG-(gaa aa-------- ---------- ---------- 1921 ---------- -)-CAC--UC --G-G---U- G-C|agca|G G-C-G-a-gg (uaguu---- 1981 ---------- --------)c cc-c-G--C- U|-------G GA-U|GGU-A AUA-AG-GU- 2041 GAu-G-GG-| -Auu------ ------|-gu -cuc------ ---------- --(uaga--- 2101 ---)------ ---------- gacuu-gcaa u|-------- ---------- ---------- 2161 ---------- ---------- ---------- --GGG|-CAA -|UC-CGCA| GCC|-AAg-- 2221 |UCCC----- ------(--- ---------- ---------- ---------- ---------- 2281 ---------- ----)|-|u| gu----|--- ---------- ---------- ---------- 2341 (c-aa----- ---------- ---------- ---------- ---------- ---------- 2401 -------)-- ---------- ---------- ---------- ---------- -------|-- 2461 ---------- ---|a|u|-- ---------- GGGA|--AA| GGU|--UCA| CA-GACU-G| 2521 -UAA|GGA-A --A-GG|G|G UGccgc---- ---------- -(uuccuauu ac-------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------) ---------- 2701 -gcggCGCU- |UAA-GA-GA |CA-GUC|G| -|GU-----| c----|cccu gc-------- 2761 ----(-GAAA ---------- )--------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---------- ---------- 2881 --|------- gc--a-g-a- g|-------- --|-ucccga ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- -|-auuggag gaa|aaggc- ccau(--uaa 3121 aa-------- ---------- ---------- ---------- ---------- ---------- 3181 ---------- ---------- -----)gugg g-cuuu|--- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ---------- ---------- ---------- ---------- ---------- ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- --|-ggaga- g--|------ ---------- --c---cucg 4021 gga|------ --------|g gcc------- ---------- ---------- ---------( 4081 agagaggaaa ggcuccgcgc ccuccucacu c--------- ---------- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- --------|- ---------- --ggcu|--- ---------- -------ggg 4261 uucaag(ucc ---------- ---------- ---------- )uuugacuuu ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------| -----AU|G- -||uuc-cgu agguga| // LOCUS Ban.a.1.2 4557 bp RNA RNA 05-NOV-1996 DEFINITION Bangia atropurpurea.; 18S ribosomal RNA. ACCESSION D88387 KEYWORDS 18S ribosomal RNA. SOURCE Bangia atropurpurea. ORGANISM Bangia atropurpurea. REFERENCE 1 (bases 1 to 3004) AUTHORS Saga,N. TITLE Direct Submission JOURNAL Science and Technology; 3-20-1 Orido, Shimizu, Shizuoka 424, Japan (E-mail:nsaga@scc.u-tokai.ac.jp, Tel:0543-34-0411, Fax : 0543-34-9834) Submitted (14-OCT-1996) to the DDBJ/EMBL/GenBank databases. Naotsune Saga, Tokai University, Graduate School of Marine STANDARD No information REFERENCE 2 (bases 1 to 3004) AUTHORS Shimomura,K., Yamazaki,S., Miyata,T. and Saga,N. TITLE Phylogenetic position of Bangia atropurpurea (Bangiales, Rhodophyta) based on the 18S rDNA sequence JOURNAL Unpublished (1997) STANDARD No information COMMENTS Sequence information (bases 1 to 4557) Corresponding GenBank entry: D88387 BASE COUNT 182 a 170 c 199 g 142 t 3864 others ORIGIN 1 |gucguaaca aggU||uuc- -------(-- ---------- ---------- ---------- 61 ---------- ---------- --)|------ ---------- ----c|---- ---------( 121 -------)-- ---------| --[guauugg gacaacagca gacacacaca cacacac(ca 181 augugcgugu gcgugugugu )gugugugug ugugugugau ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- ---------- 661 ---------- cccucugu-g ggaaaacgua c]--|----- -------|-- ---------- 721 |----au|-- --gaa|Gccu u---|----- ---------- ---|UGCG-- ---------- 781 gccc-(gaaa --)-g-ggu- ---------g cacagu---a cgcgacuau- ---------- 841 ---aaau-ac ugauu----- -----cugug guuaa----- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 -------CGC A|--A----- -----|GCG- GC-------- ---------- ---------- 1021 --(g------ ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- --------cu ucgcaccacg cucuu(ggca a--------- 1141 -----)aaga ggcaugugau gaa------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 ---------- ---------- ---------- ---------- ---------- ---------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- ---------- -)-------- ---------- 1561 ---------- ---------- ---------- ---------- ---------- ---------- 1621 ---------- --G--CCGC| --GA|CUUU- C-U-C|AAAU |CG--C-GGG |AACA----| 1681 C-CC------ ---------- ---------- -|Ua------ ---------- ---------- 1741 ---------- ---------- ---------- ---------- --------AA GC|------C 1801 AG-------- AA-GA|U-AC C|-------- ---------- ---------- ---------- 1861 ---|GCG-G- UC-C-G---- -U-UG-(gac aacaa-a--- ---------- ---------- 1921 ---------- -)-CAA--CG --G-G---C- GAC|agca|G U-C-G-g-gg (uagug---- 1981 ---------- --------)c cc-U-G--A- U|-------G GA-U|GGU-A ACA-AC-UC- 2041 UU--C-UG-| -gauc----- ------|-gc ucucucucgc ucgc--gcgc cg(cucuua- 2101 --u)-uggug gcgc-gccag cagaaggcaa u|-------- ---------- ---------- 2161 ---------- ---------- ---------- --GGG|-CAA -|UC-CGCA| GCC|-AAg-- 2221 |CUCC----- ------(--- ---------- ---------- ---------- ---------- 2281 ---------- ----)|-|a| ua----|guc ccuuccccc- ---------- ---------- 2341 (c-ccc-ccc -caa------ ---------- ---------- ---------- ---------- 2401 -------)-- ---------- ---------- ---------- ---------- -------|-g 2461 gggagag-ag ac-|u|-|-- ---------- GGAG|--AA| GGU|--UCA| CA-GACU-G| 2521 -UAA|GGG-A --A-GG|G|G UCuuuu---- ---------- -(acau---- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------) ---------- 2701 -aaaaGGCU- |UAA-GA-GA |CA-GUC|G| -|GU-----| c----|cccu gc-------- 2761 ----(-GAAA ---------- )--------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---------- ---------- 2881 --|------- gc--a-g-a- g|-------- --|-ucucau gug------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- -|------ag gaa|ggcac- ucau(--gaa 3121 aa-------- ---------- ---------- ---------- ---------- ---------- 3181 ---------- ---------- -----)guga g-agcu|--- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ---------- ---------- ---------- ---------- ---------- ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- --|-ggaga- g--|------ ---------- -ca---c-ug 4021 aga|------ -------a|u c-uagagaa- ---------- ---------- ---------( 4081 cgccacucuu ugagugggcg ggacucucua gguggggagu u--------- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- --------|- -----uucuc a-auga|--- ---------- -------aaa 4261 aagaua(aga c--------- ---------- ---------- )uauaca--- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------| -----AC|G- -||uuc-cgu agguga| // LOCUS Ban.a.2.1 4557 bp RNA RNA 28-JAN-191 DEFINITION Bangia atropurpurea. ACCESSION No information KEYWORDS No information. SOURCE Bangia atropurpurea. ORGANISM Bangia atropurpurea. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 4557) Corresponding GenBank entry: L36066 Robin, I think you're making an alignment with an Ichthyophonus sequence in it. Could you kindly add in this one too? It's a real Bangia -- the "Bangia atropurpurea" is sent earlier (clone 12) turned out to be a diatom. We have another Bangia atropurpurea too (clone 14) which is a unicellular green alga. Isn't field-collected material fun?? Anyway, this is the real thing, and it alignes quite easily with the Porphyra species (I aligned it roughly by eye to make the provisional trees -- there weren't too many ambiguities). Many thanks, Mark Bangia atropurpurea clone 1-2 ("it's the real thing") BASE COUNT 249 a 253 c 324 g 236 t 3495 others ORIGIN 1 |gucguaaca aggU||uuu- -------(-- ---------- ---------- ---------- 61 ---------- ---------- --)|------ ---------- ---cc|---- ---------( 121 -------)-- ---------| --[aagugaa acagagcauc uuuuaucgga cgcgucacac 181 aacuacuugu ccaccaccau caggucugag uauggaugca cuccgggaca uggagacacu 241 ugaacucugg gugguucuug aacaggcggc aguacagacg gcucuuguuc acguccccag 301 acucaaaggc caugugcagg ggguugacgc acuuugcguu guggcaucgg ugcgaagccu 361 cuucgccuuc agucgguaga cgguugaagg cggcgauggu gcugaucagg ugacaguagu 421 acuugcgccc aucaauccgc aucuggacgu acccagcgau cuuuggccgg agaguacguc 481 gucguaauac aaugguuagu gccgacggug ucuugggucc accgcauggc ucaucaagca 541 uugucauugc agcgucgcgc uucgcguugg uugaggaaga agggugcgua cgagugguug 601 ggugcaggag cguccauggu gaaugu---- ---------- ---------- ---------- 661 ---------- ccuucugu-g ggaagcgcuu -]--|----- -------|-- ---------- 721 ----acc|-- --gaa|Gccu u---|----- ---------- ---|UGCA-- ---------- 781 gccu-(gaaa --)-g-ggu- ---------g gcgau----- cgcgacuau- ---------- 841 ---aaau-aa gga------- -----gucga cuugaa---- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 -------UGC A|--A----- -----|GCG- GC-------- ---------- ---------- 1021 --(g------ ---------- ---------- ---------- ---------- ---------- 1081 -gaagaaggg gcgaguggac cuuuggggga gacgaacgac cccgc(acua agc------- 1141 -----)gcgg gaaucguagc cguucgucca ccuuccacgu ugccauuuuu uca------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 ---------- ---------- ---------- ---------- ---------- ---------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- ---------- -)-------- ---------- 1561 ---------- ---------- ---------- ---------- ---------- ---------- 1621 ---------- --G--CCGC| --AA|CUUU- C-U-C|AAAU |UG--C-GGG |AAAA----| 1681 C-CC------ ---------- ---------- -|Ua------ ---------- ---------- 1741 ---------- ---------- ---------- ---------- --------AA GU|------C 1801 AG-------- AA-GA|U-AC C|-------- ---------- ---------- ---------- 1861 ---|GCG-G- CU-U-C---- -U-UG-(gac aa-------- ---------- ---------- 1921 ---------- -)-CAA--GU --G-G---C- G-C|agca|G C-A-U-g-gg (uagug---- 1981 ---------- --------)c cc-U-U--G- U|-------G GA-U|GGU-A AAA-AC-CC- 2041 UU--C-UG-| -aau------ ------|-cg auacuccc-- ---------- --(uu-uga- 2101 --c)------ --------gg gcguggagaa u|-------- ---------- ---------- 2161 ---------- ---------- ---------- --GGG|-CAA -|UC-CGCA| GCC|-AAg-- 2221 |CUCC----- ------(--- ---------- ---------- ---------- ---------- 2281 ---------- ----)|-|g| gg----|guu c--------- ---------- ---------- 2341 (c-cgg-ua- ---------- ---------- ---------- ---------- ---------- 2401 -------)-- ---------- ---------- ---------- ---------- -------|-- 2461 --------gg ga-|c|-|-- ---------- GGAG|--AA| GGU|-uUCA| CA-GACU-G| 2521 -UAA|GGG-A --A-GG|G|G -uaacc---- ---------- -(cguaaca- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------) ---------- 2701 -ggagacCU- |UAA-GA-GA |CA-GUC|G| -|GU-----| c----|cccu cc-------- 2761 ----(-GGAA ---------- )--------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---------- ---------- 2881 --|------- gc--a-g-a- g|-------- --|-uucugg g--------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- -|-----aau gaa|gggca- uucu(--gaa 3121 a--------- ---------- ---------- ---------- ---------- ---------- 3181 ---------- ---------- -----)agga a-aguc|--- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ---------- ---------- ---------- ---------- ---------- ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- --|uggaga- g--|------ ---------- -ua---cuca 4021 gga|------ -------u|c cuug------ ---------- ---------- ---------( 4081 acac------ ---------- ---------- ---------- ---------- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- --------|- ---------- c-aagg|--- ---------- ---------- 4261 ugguag(uuu ccaau----- ---------- ---------- )cua------ ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------| -----AC|G- -||uuc-cgu agguga| // LOCUS Por.h.2.1 4557 bp RNA RNA 09-JUL-1998 DEFINITION Porphyra haitanensis. subsp. Porphyra haitanensis isolate Yuge Ehime.. ACCESSION No information KEYWORDS No information. SOURCE Porphyra haitanensis. subsp. Porphyra haitanensis isolate Yuge Ehime. ORGANISM Porphyra haitanensis. REFERENCE 1 (bases 1 to 3004) AUTHORS Kunimoto,M., Yamamoto,Y., Kaminishi,Y., Mizukami,Y. and Kito,H . TITLE A discrimination of Porphyra species (Rhodophyta) based on the sequences of small subunit ribosomal RNA gene JOURNAL Published Only in DataBase (1998) In press STANDARD No information COMMENTS Sequence information (bases 1 to 4557) Corresponding GenBank entry: AB013181 LOCUS AB013181 2391 bp DNA PLN 09-JUL-1998 DEFINITION Porphyra haitanensis gene for small subunit rRNA, isolate Yuge Ehime. ACCESSION AB013181 NID g3298492 KEYWORDS small subunit ribosomal RNA; SSU rRNA. SOURCE Porphyra haitanensis gametophyte thallus DNA. ORGANISM Porphyra haitanensis Eukaryota; Rhodophyta; Bangiophyceae; Bangiales; Bangiaceae; Porphyra. REFERENCE 1 (bases 1 to 2391) AUTHORS Kunimoto,M., Yamamoto,Y., Kaminishi,Y., Mizukami,Y. and Kito,H. TITLE A discrimination of Porphyra species (Rhodophyta) based on the sequences of small subunit ribosomal RNA gene JOURNAL Published Only in DataBase (1998) In press REFERENCE 2 (bases 1 to 2391) AUTHORS Kunimoto,M., Yamamoto,Y., Kaminishi,Y., Mizukami,Y. and Kito,H. TITLE Direct Submission JOURNAL Submitted (21-APR-1998) to the DDBJ/EMBL/GenBank databases. Masahiko Kunimoto, National Fisheries University, Food Science; Nagatahon-machi 2-7-1, Shimonoseki, Yamaguchi 759-6595, Japan (E-mail:jkunimo@fish-u.ac.jp, Tel:0832-86-5111, Fax:0832-86-2292) FEATURES Location/Qualifiers source 1..2391 /organism="Porphyra haitanensis" /note="collection_site: Yuge Ehime" /db_xref="taxon:76159" /dev_stage="gametophyte" /tissue_type="thallus" primer_bind 1..22 /note="PCR primer" precursor_RNA <1..>2391 /note="precursor of small subunit ribosomal RNA (SSU rRNA)" exon 23..1807 /note="putative" /product="SSU rRNA" intron 1808..2361 /note="group I intron; putative" exon 2362..2391 /note="putative" /product="SSU rRNA" BASE COUNT 600 a 526 c 681 g 584 t BASE COUNT 144 a 136 c 190 g 104 t 3983 others ORIGIN 1 |~~~~~aaca aggU||uuc- -------(-- ---------- ---------- ---------- 61 ---------- ---------- --)|------ ---------- ----c|---- ---------( 121 -------)-- ---------| --[guauuuu -guggaugga cacccc(gac gg)guggu-- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- ---------- 661 ---------- ccuuccgu-a ggaaaacgua c]--|----- -------|-- ---------- 721 |----ac|-- --gaa|Gccu u---|----- ---------- ---|UGCA-- ---------- 781 gccc-(gaaa --)-g-ggu- ---------g cacagg---a cgcgacuag- -g-------- 841 --aaaaaaaa ggauu----- -----cugug gucaa----- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 -------UGC A|--A----- -----|GCG- GC-------- ---------- ---------- 1021 --(ggc---- ---------- ---------- ---------c accg------ ---------- 1081 ---------- ---------- ---------c cccccccccc caccu(cgcc aa-------- 1141 -----)aguu gggggggggg ggggagggac a--------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 ---------- ---------- ---------- ---------- ---------- ---------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- ---------- -)-------- ---------- 1561 ---------- ---------- ---------- ---------- ---------- ---------- 1621 ---------- --G--CUGC| --GA|AUUU- C-U-C|AAAU |UG--C-GGG |AACA----| 1681 C-CC------ ---------- ---------- -|Ua------ ---------- ---------- 1741 ---------- ---------- ---------- ---------- --------AA GU|------C 1801 AG-------- CA-AA|C-AC C|-------- ---------- ---------- ---------- 1861 ---|GCG-G- CU-U-G---- -G-CGc(gaa aa-------- ---------- ---------- 1921 ---------- -)GCGC--CA --G-G---C- G-C|agca|G U-U-G-g-gg (uagcg---- 1981 ---------- --------)c cc-U-G--A- C|-------G GA-U|GGU-A AUA-Gcuuu- 2041 ug--u-ug-| -aau------ ------|--- ---------- ---------- ---------- 2101 ---------- ---------- gga-a--caa u|-------- ---------- ---------- 2161 ---------- ---------- ---------- --GGG|-CAA -|UC-CGCA| GCC|-AAg-- 2221 |CCCC----- ------(--- ---------- ---------- ---------- ---------- 2281 ---------- ----)|-|u| aa----|gg- ccc------- ---------- ---------- 2341 (c-uug-c-- ---------- ---------- ---------- ---------- ---------- 2401 -------)-- ---------- ---------- ---------- ---------- -------|-- 2461 -----gg-g- -u-|a|u|-- ---------- GGGG|--AA| GGU|--UCA| CA-GACU-G| 2521 -UAA|GGG-A --A-GG|G|G Uuuuuu---- ---------- -(ugcuau-- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------) ---------- 2701 -gaagaGCU- |UAA-GA-GA |CA-GUC|G| -|GU-----| c----|cccu gc-------- 2761 ----(-GAAA ---------- )--------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---------- ---------- 2881 --|------- gc--a-g-a- g|-------- --|-ucucau ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- -|---gugag gaa|ggcgc- ccag(--gaa 3121 aaa------- ---------- ---------- ---------- ---------- ---------- 3181 ---------- ---------- -----)gugg g-ugcu|--- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ---------- ---------- ---------- ---------- ---------- ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- --|-ggaga- g--|------ ---------- --c---caug 4021 gga|------ --------|g cccuuucuc- ---------- ---------- ---------( 4081 guucg----- ---------- ---------- ---------- ---------- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- --------|- -----ggggg g-gggc|--- ---------- -----gggga 4261 guuuuc(caa gacga----- ---------- ---------- )gaaaaauaa uac------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------| -----AC|G- -||uuc-cgu agguga| // LOCUS Por.y.3.2 4557 bp RNA RNA 17-JUL-1998 DEFINITION Porphyra yezoensis. subsp. Porphyra yezoensis isolate Ogatsu Miyagi.. ACCESSION No information KEYWORDS No information. SOURCE Porphyra yezoensis. subsp. Porphyra yezoensis isolate Ogatsu Miyagi. ORGANISM Porphyra yezoensis. REFERENCE 1 (bases 1 to 3004) AUTHORS Kunimoto,M., Yamamoto,Y., Kaminishi,Y., Mizukami,Y. and Kito,H . TITLE A discrimination of Porphyra species (Rhodophyta) based on the sequences of small subunit ribosomal RNA gene JOURNAL Published Only in DataBase (1998) In press STANDARD No information COMMENTS Sequence information (bases 1 to 4557) Corresponding GenBank entry: AB013178 LOCUS AB013178 2858 bp DNA PLN 17-JUL-1998 DEFINITION Porphyra yezoensis gene for small subunit rRNA, isolate Ogatsu Miyagi. ACCESSION AB013178 NID g3298489 KEYWORDS small subunit ribosomal RNA; SSU rRNA. SOURCE Porphyra yezoensis gametophyte thallus DNA. ORGANISM Porphyra yezoensis Eukaryota; Rhodophyta; Bangiophyceae; Bangiales; Bangiaceae; Porphyra. REFERENCE 1 (bases 1 to 2858) AUTHORS Kunimoto,M., Yamamoto,Y., Kaminishi,Y., Mizukami,Y. and Kito,H. TITLE A discrimination of Porphyra species (Rhodophyta) based on the sequences of small subunit ribosomal RNA gene JOURNAL Published Only in DataBase (1998) In press REFERENCE 2 (bases 1 to 2858) AUTHORS Kunimoto,M., Yamamoto,Y., Kaminishi,Y., Mizukami,Y. and Kito,H. TITLE Direct Submission JOURNAL Submitted (21-APR-1998) to the DDBJ/EMBL/GenBank databases. Masahiko Kunimoto, National Fisheries University, Food Science; Nagatahon-machi 2-7-1, Shimonoseki, Yamaguchi 759-6595, Japan (E-mail:jkunimo@fish-u.ac.jp, Tel:0832-86-5111, Fax:0832-86-2292) FEATURES Location/Qualifiers source 1..2858 /organism="Porphyra yezoensis" /note="collection_site: Ogatsu Miyagi" /db_xref="taxon:2788" /dev_stage="gametophyte" /tissue_type="thallus" primer_bind 1..22 /note="PCR primer" precursor_RNA <1..>2858 /note="precursor of small subunit ribosomal RNA (SSU rRNA)" exon 23..566 /note="putative" /product="SSU rRNA" intron 567..1083 /note="putative" exon 1084..2319 /note="putative" /product="SSU rRNA" intron 2320..2828 /note="group I intron; putative" exon 2829..2858 /note="putative" /product="SSU rRNA" BASE COUNT 729 a 638 c 812 g 679 t BASE COUNT 134 a 121 c 165 g 114 t 4023 others ORIGIN 1 |gucguaaca aggU||uuc- -------(-- ---------- ---------- ---------- 61 ---------- ---------- --)|------ ---------- ----c|---- ---------( 121 -------)-- ---------| --[guauuuu -guggaugg- cacucguggc g(uucuuu-- 181 ---------- ---------- ---------- )gcgccacgc gga-gucc-- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- ---------- 661 ---------- ccuuccgu-a ggaaaacgua c]--|----- -------|-- ---------- 721 |----ac|-- --gaa|Gccu u---|----- ---------- ---|UGCG-- ---------- 781 gccc-(gaaa --)-g-ggu- ---------g cacagu---g cgcga-uau- ---------- 841 ---aaac-ac ugauu----- -----cugug gucaa----- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 -------CGC A|--A----- -----|GC-- GC-------- ---------- ---------- 1021 --(g------ ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- guucu(gugg a--------- 1141 -----)agaa aca------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 ---------- ---------- ---------- ---------- ---------- ---------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- ---------- -)-------- ---------- 1561 ---------- ---------- ---------- ---------- ---------- ---------- 1621 ---------- --G--CUGC| --GA|CUUU- --U-C|AAAU |UG--C-GGG |AACA----| 1681 C-CC------ ---------- ---------- -|Ua------ ---------- ---------- 1741 ---------- ---------- ---------- ---------- --------AA GU|------C 1801 AA-------- CA-A-|C-AC C|-------- ---------- ---------- ---------- 1861 ---|GCG-G- CC-G-G---- -A-CGu(g-a aa-------- ---------- ---------- 1921 ---------- -)GCGU--CA --G-G---C- G-C|-gca|G U-C-G-g-gg (uagcg---- 1981 ---------- --------)c cc-U-G--G- C|-------G GA-A|GGU-A A-A-Gc-uu- 2041 ug--u-ug-| -a-u------ ------|--- ---------- ---------- ---------- 2101 ---------- ---------- ggc-a--caa u|-------- ---------- ---------- 2161 ---------- ---------- ---------- --GGG|-CAA -|UC-CG-A| GCC|-AAg-- 2221 |CCCC----- ------(--- ---------- ---------- ---------- ---------- 2281 ---------- ----)|c|u| aa----|-gg ucc------- ---------- ---------- 2341 (u-uuu-ugc ---------- ---------- ---------- ---------- ---------- 2401 -------)-- ---------- ---------- ---------- ---------- -------|-- 2461 -----gg-gu c--|a|u|-- ---------- GGGG|--AA| GGU|--UCA| CA-GACU-G| 2521 -UAA|GGG-A --G-GG|G|- uuucuu---- ---------- -(ucaua--- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------) ---------- 2701 -aagaaGCU- |UAA-GA-GA |CA-GU-|G| -|GU-----| c----|cccu gc-------- 2761 ----(-GAAA ---------- )--------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---------- ---------- 2881 --|------- gc--a-g-u- g|-------- --|-ucucau g--------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- -|----ugag -aa|ggcgc- ccau(--gaa 3121 aa-------- ---------- ---------- ---------- ---------- ---------- 3181 ---------- ---------- -----)gugg g-cgcu|--- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ---------- ---------- ---------- ---------- ---------- ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- --|-ggaga- g--|------ ---------- ------caug 4021 gga|------ --------|g cccuc----- ---------- ---------- ---------( 4081 uau------- ---------- ---------- ---------- ---------- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- --------|- ---------g a-gggu|--- ---------- -----gggga 4261 -uuuuc(-ua gauaaua-ug a--------- ---------- )gaaacaaaa c--------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------| -----AC|G- -||uuc-cgu agguga| // LOCUS Por.y.4.1 4557 bp RNA RNA 08-SEP-1998 DEFINITION Porphyra yezoensis. subsp. Porphyra yezoensis (strain:OG-4). ACCESSION No information KEYWORDS No information. SOURCE Porphyra yezoensis. subsp. Porphyra yezoensis (strain:OG-4). ORGANISM Porphyra yezoensis. REFERENCE 1 (bases 1 to 3004) AUTHORS Kunimoto,M., Yamamoto,Y., Kito,H., Kaminishi,Y. and Mizukami,Y . TITLE A molecular divergence of ssu rRNA gene and ribosomal internal transcribed spacer 1 in Porphyra yezoensis (Rhodophyta) JOURNAL Unpublished (1998) STANDARD No information COMMENTS Sequence information (bases 1 to 4557) Corresponding GenBank entry: AB017081 LOCUS AB017081 1170 bp DNA PLN 08-SEP-1998 DEFINITION Porphyra yezoensis DNA, internal transcribed spacer 1 (ITS1), strain: OG-4. ACCESSION AB017081 NID g3510357 KEYWORDS ssu rRNA; ITS1; 5.8S rRNA. SOURCE Porphyra yezoensis (strain:OG-4) gametophyte individual thallus DNA. ORGANISM Porphyra yezoensis Eukaryota; Rhodophyta; Bangiophyceae; Bangiales; Bangiaceae; Porphyra. REFERENCE 1 (sites) AUTHORS Kunimoto,M., Yamamoto,Y., Kito,H., Kaminishi,Y. and Mizukami,Y. TITLE A molecular divergence of ssu rRNA gene and ribosomal internal transcribed spacer 1 in Porphyra yezoensis (Rhodophyta) JOURNAL Unpublished (1998) REFERENCE 2 (bases 1 to 1170) AUTHORS Kunimoto,M., Yamamoto,Y., Kito,H., Kaminishi,Y. and Mizukami,Y. TITLE Direct Submission JOURNAL Submitted (21-AUG-1998) to the DDBJ/EMBL/GenBank databases. Masahiko Kunimoto, National Fisheries University, Department of Food Science; Nagatahon-machi 2-7-1, Shimonoseki, Yamaguchi 759-6595, Japan (E-mail:jkunimo@fish-u.ac.jp, Tel:0832-86-5111(ex.421), Fax:0832-86-2292) FEATURES Location/Qualifiers source 1..1170 /organism="Porphyra yezoensis" /note="collection_site: Ogatsu Miyagi" /strain="OG-4" /db_xref="taxon:2788" /dev_stage="gametophyte" /tissue_type="individual thallus" rRNA join(<1..218,733..762) /note="putative" /product="small subunit ribosomal RNA" intron 219..732 /note="group I intron; putative" misc_feature 763..1115 /note="ITS1; putative" rRNA 1116..>1170 /note="putative" /product="5.8S ribosomal RNA" BASE COUNT 287 a 287 c 316 g 280 t BASE COUNT 135 a 123 c 167 g 114 t 4018 others ORIGIN 1 |gucguaaca aggU||uuc- -------(-- ---------- ---------- ---------- 61 ---------- ---------- --)|------ ---------- ----c|---- ---------( 121 -------)-- ---------| --[guauuuu -guggaugg- cacucguggc g(uucuuu-- 181 ---------- ---------- ---------- )gcgccacgc gga-gucc-- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- ---------- 661 ---------- ccuuccgu-a ggaaaacgua c]--|----- -------|-- ---------- 721 |----ac|-- --gaa|Gccu u---|----- ---------- ---|UGCG-- ---------- 781 gccc-(gaaa --)-g-ggu- ---------g cacagu---g cgcga-uau- ---------- 841 ---aaac-ac ugauu----- -----cugug gucaa----- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 -------CGC A|--A----- -----|GC-- GC-------- ---------- ---------- 1021 --(g------ ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- guucu(gugg a--------- 1141 -----)agaa aca------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 ---------- ---------- ---------- ---------- ---------- ---------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- ---------- -)-------- ---------- 1561 ---------- ---------- ---------- ---------- ---------- ---------- 1621 ---------- --G--CUGC| --GA|CUUU- --U-C|AAAU |UG--C-GGG |AACA----| 1681 C-CC------ ---------- ---------- -|Ua------ ---------- ---------- 1741 ---------- ---------- ---------- ---------- --------AA GU|------C 1801 AA-------- CA-A-|C-AC C|-------- ---------- ---------- ---------- 1861 ---|GCG-G- CC-G-G---- -A-CGu(g-a aa-------- ---------- ---------- 1921 ---------- -)GCGU--CA --G-G---C- G-C|-gca|G U-C-G-g-gg (uagcg---- 1981 ---------- --------)c cc-U-G--G- C|-------G GA-A|GGU-A A-A-Gc-uu- 2041 ug--u-ug-| -a-u------ ------|--- ---------- ---------- ---------- 2101 ---------- ---------- ggc-a--caa u|-------- ---------- ---------- 2161 ---------- ---------- ---------- --GGG|-CAA -|UC-CG-A| GCC|-AAg-- 2221 |CCCC----- ------(--- ---------- ---------- ---------- ---------- 2281 ---------- ----)|c|u| aa----|-gg ucc------- ---------- ---------- 2341 (u-uuu-ugc ---------- ---------- ---------- ---------- ---------- 2401 -------)-- ---------- ---------- ---------- ---------- -------|-- 2461 -----gg-gu c--|a|u|-- ---------- GGGG|--AA| GGU|--UCA| CA-GACU-G| 2521 -UAA|GGG-A --G-GG|G|- uuucuu---- ---------- -(ucaua--- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------) ---------- 2701 -aagaaGCU- |UAA-GA-GA |CA-GU-|G| -|GU-----| c----|cccu gc-------- 2761 ----(-GAAA ---------- )--------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---------- ---------- 2881 --|------- gc--a-g-u- g|-------- --|-ucucau g--------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- -|----ugag gaa|ggcgc- ccau(--gaa 3121 aa-------- ---------- ---------- ---------- ---------- ---------- 3181 ---------- ---------- -----)gugg g-cgcu|--- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ---------- ---------- ---------- ---------- ---------- ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- --|-ggaga- g--|------ ---------- --c---caug 4021 gga|------ --------|g cccuc----- ---------- ---------- ---------( 4081 uau------- ---------- ---------- ---------- ---------- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- --------|- ---------g a-gggu|--- ---------- -----gggga 4261 guuuuc(cua gauaauaaug a--------- ---------- )gaaacaaaa c--------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------| -----AC|G- -||uuc-cgu agguga| // LOCUS Por.y.5.1 4557 bp RNA RNA 08-SEP-1998 DEFINITION Porphyra yezoensis OG-1.. ACCESSION No information KEYWORDS No information. SOURCE Porphyra yezoensis OG-1. ORGANISM Porphyra yezoensis OG-1. REFERENCE 1 (bases 1 to 3004) AUTHORS Kunimoto,M., Yamamoto,Y., Kito,H., Kaminishi,Y. and Mizukami,Y . TITLE internal transcribed spacer 1 in Porphyra yezoensis (Rhodophyta) A molecular divergence of ssu rRNA gene and ribosomal JOURNAL Unpublished (1998) STANDARD No information COMMENTS Sequence information (bases 1 to 4557) Corresponding GenBank entry: AB017078 LOCUS AB017078 1175 bp DNA PLN 08-SEP-1998 DEFINITION Porphyra yezoensis DNA, internal transcribed spacer 1 (ITS1), strain: OG-1. ACCESSION AB017078 NID g3510354 KEYWORDS ssu rRNA; ITS1; 5.8S rRNA. SOURCE Porphyra yezoensis (strain:OG-1) gametophyte individual thallus DNA. ORGANISM Porphyra yezoensis Eukaryota; Rhodophyta; Bangiophyceae; Bangiales; Bangiaceae; Porphyra. REFERENCE 1 (sites) AUTHORS Kunimoto,M., Yamamoto,Y., Kito,H., Kaminishi,Y. and Mizukami,Y. TITLE A molecular divergence of ssu rRNA gene and ribosomal internal transcribed spacer 1 in Porphyra yezoensis (Rhodophyta) JOURNAL Unpublished (1998) REFERENCE 2 (bases 1 to 1175) AUTHORS Kunimoto,M., Yamamoto,Y., Kito,H., Kaminishi,Y. and Mizukami,Y. TITLE Direct Submission JOURNAL Submitted (21-AUG-1998) to the DDBJ/EMBL/GenBank databases. Masahiko Kunimoto, National Fisheries University, Department of Food Science; Nagatahon-machi 2-7-1, Shimonoseki, Yamaguchi 759-6595, Japan (E-mail:jkunimo@fish-u.ac.jp, Tel:0832-86-5111(ex.421), Fax:0832-86-2292) FEATURES Location/Qualifiers source 1..1175 /organism="Porphyra yezoensis" /note="collection_site: Ogatsu Miyagi" /strain="OG-1" /db_xref="taxon:2788" /dev_stage="gametophyte" /tissue_type="individual thallus" rRNA join(<1..218,744..773) /note="putative" /product="small subunit ribosomal RNA" intron 219..743 /note="group I intron; putative" misc_feature 774..1120 /note="ITS1; putative" rRNA 1121..>1175 /note="putative" /product="5.8S ribosomal RNA" BASE COUNT 289 a 292 c 318 g 276 t BASE COUNT 138 a 126 c 170 g 116 t 4007 others ORIGIN 1 |gucguaaca aggU||uuc- -------(-- ---------- ---------- ---------- 61 ---------- ---------- --)|------ ---------- ----c|---- ---------( 121 -------)-- ---------| --[guauuuu -guggauggg cacucguggc g(gucuuu-- 181 ---------- ---------- ---------- )gcgccaugc ggaugucc-- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- ---------- 661 ---------- ccuuccgu-a ggaaaacgua c]--|----- -------|-- ---------- 721 |----ac|-- --gaa|Gccu u---|----- ---------- ---|UGCG-- ---------- 781 gccc-(gaaa --)-g-ggu- ---------g cacagu---g cgcgacuau- ---------- 841 ---aaac-ac ugauu----- -----cugug gucaa----- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 -------CGC A|--A----- -----|GCA- GC-------- ---------- ---------- 1021 --(g------ ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- guucu(gugg a--------- 1141 -----)agaa ca-------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 ---------- ---------- ---------- ---------- ---------- ---------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- ---------- -)-------- ---------- 1561 ---------- ---------- ---------- ---------- ---------- ---------- 1621 ---------- --G--CUGC| --GA|CUUU- C-U-C|AAAU |UG--C-GGG |AACA----| 1681 C-CC------ ---------- ---------- -|Ua------ ---------- ---------- 1741 ---------- ---------- ---------- ---------- --------AA GU|------C 1801 AA-------- CA-AA|C-AC C|-------- ---------- ---------- ---------- 1861 ---|GCG-G- CC-G-G---- -A-CGu(g-a aa-------- ---------- ---------- 1921 ---------- -)GCGU--CA --G-G---C- G-C|agca|G U-C-G-g-gg (uagcg---- 1981 ---------- --------)c cc-U-G--G- C|-------G GA-A|GGU-A AUA-Gc-uu- 2041 ug--u-ug-| -aau------ ------|--- ---------- ---------- ---------- 2101 ---------- ---------- ggc-a--caa u|-------- ---------- ---------- 2161 ---------- ---------- ---------- --GGG|-CAA -|UC-CGCA| GCC|-AAg-- 2221 |CCCC----- ------(--- ---------- ---------- ---------- ---------- 2281 ---------- ----)|-|u| aa----|-gg ucc------- ---------- ---------- 2341 (u-uuu-ugc ---------- ---------- ---------- ---------- ---------- 2401 -------)-- ---------- ---------- ---------- ---------- -------|-- 2461 -----gg-gu cu-|a|u|-- ---------- GGGG|--AA| GGU|--UCA| CA-GACU-G| 2521 -UAA|GGG-A --G-GG|G|G Uuucuu---- ---------- -(ccaua--- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------) ---------- 2701 -aagaaGCU- |UAA-GA-GA |CA-GUC|G| -|GU-----| c----|cccu gc-------- 2761 ----(-GAAA ---------- )--------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---------- ---------- 2881 --|------- gc--a-g-u- g|-------- --|-ucucau g--------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- -|----ugag gaa|ggcgc- ccau(--gaa 3121 aa-------- ---------- ---------- ---------- ---------- ---------- 3181 ---------- ---------- -----)gugg g-cgcu|--- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ---------- ---------- ---------- ---------- ---------- ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- --|-ggaga- g--|------ ---------- --c---caug 4021 gga|------ --------|g cccuc----- ---------- ---------- ---------( 4081 uau------- ---------- ---------- ---------- ---------- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- --------|- ---------g a-gggu|--- ---------- -----gggga 4261 guuuuc(cua gauaauaaug a--------- ---------- )gaaacaaaa c--------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------| -----AC|G- -||uuc-cgu agguga| // LOCUS Por.y.6.1 4557 bp RNA RNA 08-SEP-1998 DEFINITION Porphyra yezoensis narawaensis cv. F6-1.. ACCESSION No information KEYWORDS No information. SOURCE Porphyra yezoensis narawaensis cv. F6-1. ORGANISM Porphyra yezoensis narawaensis cv. F6-1. REFERENCE 1 (bases 1 to 3004) AUTHORS . Kunimoto,M., Yamamoto,Y., Kito,H., Kaminishi,Y. and Mizukami,Y TITLE internal transcribed spacer 1 in Porphyra yezoensis (Rhodophyta) A molecular divergence of ssu rRNA gene and ribosomal JOURNAL Unpublished (1998) STANDARD No information COMMENTS Sequence information (bases 1 to 4557) Corresponding GenBank entry: AB017083 LOCUS AB017083 1176 bp DNA PLN 08-SEP-1998 DEFINITION Porphyra yezoensis narawaensis cv. F6-1 DNA, internal transcribed spacer 1 (ITS1). ACCESSION AB017083 NID g3510359 KEYWORDS ssu rRNA; ITS1; 5.8S rRNA. SOURCE Porphyra yezoensis (cultivar:F6-1) gametophyte vegetative DNA. ORGANISM Porphyra yezoensis Eukaryota; Rhodophyta; Bangiophyceae; Bangiales; Bangiaceae; Porphyra. REFERENCE 1 (sites) AUTHORS Kunimoto,M., Yamamoto,Y., Kito,H., Kaminishi,Y. and Mizukami,Y. TITLE A molecular divergence of ssu rRNA gene and ribosomal internal transcribed spacer 1 in Porphyra yezoensis (Rhodophyta) JOURNAL Unpublished (1998) REFERENCE 2 (bases 1 to 1176) AUTHORS Kunimoto,M., Yamamoto,Y., Kito,H., Kaminishi,Y. and Mizukami,Y. TITLE Direct Submission JOURNAL Submitted (21-AUG-1998) to the DDBJ/EMBL/GenBank databases. Masahiko Kunimoto, National Fisheries University, Department of Food Science; Nagatahon-machi 2-7-1, Shimonoseki, Yamaguchi 759-6595, Japan (E-mail:jkunimo@fish-u.ac.jp, Tel:0832-86-5111(ex.421), Fax:0832-86-2292) FEATURES Location/Qualifiers source 1..1176 /organism="Porphyra yezoensis" /cultivar="F6-1" /note="forma: narawaensis" /db_xref="taxon:2788" /dev_stage="gametophyte" /tissue_type="vegetative" rRNA join(<1..218,745..774) /note="putative" /product="small subunit ribosomal RNA" intron 219..744 /note="group I intron; putative" misc_feature 775..1121 /note="ITS1; putative" rRNA 1122..>1176 /note="putative" /product="5.8S ribosomal RNA" BASE COUNT 291 a 294 c 313 g 278 t BASE COUNT 139 a 125 c 168 g 119 t 4006 others ORIGIN 1 |gucguaaca aggU||uuc- -------(-- ---------- ---------- ---------- 61 ---------- ---------- --)|------ ---------- ----c|---- ---------( 121 -------)-- ---------| --[guauuuu -guggauggg cacucguggc g(gucuuu-- 181 ---------- ---------- ---------- )gcgccaugc ggaugucc-- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- ---------- 661 ---------- ccuuccgu-a ggaaaacgua c]--|----- -------|-- ---------- 721 |---acg|-- --aaa|Gccu u---|----- ---------- ---|UGCG-- ---------- 781 gccc-(gaaa --)-g-ggu- ---------g cacagu---g cgcgacuau- ---------- 841 ---aaac-ac ugauu----- -----cugug gucaa----- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 -------CGC A|--A----- -----|GCA- GC-------- ---------- ---------- 1021 --(g------ ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- guucu(guga c--------- 1141 -----)agaa ca-------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 ---------- ---------- ---------- ---------- ---------- ---------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- ---------- -)-------- ---------- 1561 ---------- ---------- ---------- ---------- ---------- ---------- 1621 ---------- --G--CUGC| --GA|CUUU- C-U-C|AAAU |UG--C-GGG |AACA----| 1681 C-CC------ ---------- ---------- -|Ua------ ---------- ---------- 1741 ---------- ---------- ---------- ---------- --------AA GU|------C 1801 AA-------- CA-AA|C-AC C|-------- ---------- ---------- ---------- 1861 ---|GCG-G- CU-U-G---- -A-CGu(g-a aa-------- ---------- ---------- 1921 ---------- -)GCGU--CA --G-G---C- G-C|agca|G U-C-G-g-gg (uagcg---- 1981 ---------- --------)c cc-U-G--G- C|-------G GA-A|GGU-A AUA-Gc-uu- 2041 ug--u-ug-| -aau------ ------|--- ---------- ---------- ---------- 2101 ---------- ---------- ggc-a--caa u|-------- ---------- ---------- 2161 ---------- ---------- ---------- --GGG|-CAA -|UC-CGCA| GCC|-AAg-- 2221 |CCCC----- ------(--- ---------- ---------- ---------- ---------- 2281 ---------- ----)|-|u| aa----|-gg ucc------- ---------- ---------- 2341 (u-uuu-ugu ---------- ---------- ---------- ---------- ---------- 2401 -------)-- ---------- ---------- ---------- ---------- -------|-- 2461 -----gg-gu cu-|a|u|-- ---------- GGGG|--AA| GGU|--UCA| CA-GACU-G| 2521 -UAA|GGG-A --G-GG|G|G Uuucuu---- ---------- -(ccaua--- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------) ---------- 2701 -aagaaGCU- |UAA-GA-GA |CA-GUC|G| -|GU-----| c----|cccu gc-------- 2761 ----(-GAAA ---------- )--------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---------- ---------- 2881 --|------- gc--a-g-u- g|-------- --|-ucucau g--------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- -|----ugag gaa|ggcgc- ccau(--gaa 3121 aa-------- ---------- ---------- ---------- ---------- ---------- 3181 ---------- ---------- -----)gugg g-cgcu|--- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ---------- ---------- ---------- ---------- ---------- ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- --|-ggaga- g--|------ ---------- --c---caug 4021 gga|------ --------|g cccuc----- ---------- ---------- ---------( 4081 uau------- ---------- ---------- ---------- ---------- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- --------|- ---------g a-gggu|--- ---------- -----gggga 4261 guuuuc(cua gauaauaaug a--------- ---------- )gaaacaaaa c--------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------| -----AC|G- -||uuc-cgu agguga| // LOCUS Por.y.7.1 4557 bp RNA RNA 08-SEP-1998 DEFINITION Porphyra yezoensis NA-2.. ACCESSION No information KEYWORDS No information. SOURCE Porphyra yezoensis NA-2. ORGANISM Porphyra yezoensis NA-2. REFERENCE 1 (bases 1 to 3004) AUTHORS . Kunimoto,M., Yamamoto,Y., Kito,H., Kaminishi,Y. and Mizukami,Y TITLE A molecular divergence of ssu rRNA gene and ribosomal internal transcribed spacer 1 in Porphyra yezoensis (Rhodophyta) JOURNAL Unpublished (1998) STANDARD No information COMMENTS Sequence information (bases 1 to 4557) Corresponding GenBank entry: AB017075 LOCUS AB017075 1174 bp DNA PLN 08-SEP-1998 DEFINITION Porphyra yezoensis DNA, internal transcribed spacer 1 (ITS1), strain: NA-2. ACCESSION AB017075 NID g3510351 KEYWORDS ssu rRNA; ITS1; 5.8S rRNA. SOURCE Porphyra yezoensis (strain:NA-2) gametophyte individual thallus DNA. ORGANISM Porphyra yezoensis Eukaryota; Rhodophyta; Bangiophyceae; Bangiales; Bangiaceae; Porphyra. REFERENCE 1 (sites) AUTHORS Kunimoto,M., Yamamoto,Y., Kito,H., Kaminishi,Y. and Mizukami,Y. TITLE A molecular divergence of ssu rRNA gene and ribosomal internal transcribed spacer 1 in Porphyra yezoensis (Rhodophyta) JOURNAL Unpublished (1998) REFERENCE 2 (bases 1 to 1174) AUTHORS Kunimoto,M., Yamamoto,Y., Kito,H., Kaminishi,Y. and Mizukami,Y. TITLE Direct Submission JOURNAL Submitted (21-AUG-1998) to the DDBJ/EMBL/GenBank databases. Masahiko Kunimoto, National Fisheries University, Department of Food Science; Nagatahon-machi 2-7-1, Shimonoseki, Yamaguchi 759-6595, Japan (E-mail:jkunimo@fish-u.ac.jp, Tel:0832-86-5111(ex.421), Fax:0832-86-2292) FEATURES Location/Qualifiers source 1..1174 /organism="Porphyra yezoensis" /note="collection_site: Nanaehama Hakodate Hokkaido" /strain="NA-2" /db_xref="taxon:2788" /dev_stage="gametophyte" /tissue_type="individual thallus" rRNA join(<1..218,745..774) /note="putative" /product="small subunit ribosomal RNA" intron 219..744 /note="group I intron; putative" misc_feature 775..1119 /note="ITS1; putative" rRNA 1120..1174 /note="putative" /product="5.8S ribosomal RNA" BASE COUNT 290 a 291 c 315 g 278 t BASE COUNT 139 a 125 c 168 g 119 t 4006 others ORIGIN 1 |gucguaaca aggU||uuc- -------(-- ---------- ---------- ---------- 61 ---------- ---------- --)|------ ---------- ----c|---- ---------( 121 -------)-- ---------| --[guauuuu -guggauggg cacucguggc g(gucuuu-- 181 ---------- ---------- ---------- )gcgccaugc ggaugucc-- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- ---------- 661 ---------- ccuuccgu-a ggaaaacgua c]--|----- -------|-- ---------- 721 |---acg|-- --aaa|Gccu u---|----- ---------- ---|UGCG-- ---------- 781 gccc-(gaaa --)-g-ggu- ---------g cacagu---g cgcgacuau- ---------- 841 ---aaac-ac ugauu----- -----cugug gucaa----- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 -------CGC A|--A----- -----|GCA- GC-------- ---------- ---------- 1021 --(g------ ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- guucu(guga c--------- 1141 -----)agaa ca-------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 ---------- ---------- ---------- ---------- ---------- ---------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- ---------- -)-------- ---------- 1561 ---------- ---------- ---------- ---------- ---------- ---------- 1621 ---------- --G--CUGC| --GA|CUUU- C-U-C|AAAU |UG--C-GGG |AACA----| 1681 C-CC------ ---------- ---------- -|Ua------ ---------- ---------- 1741 ---------- ---------- ---------- ---------- --------AA GU|------C 1801 AA-------- CA-AA|C-AC C|-------- ---------- ---------- ---------- 1861 ---|GCG-G- CU-U-G---- -A-CGu(gaa a--------- ---------- ---------- 1921 ---------- -)GCGU--CA --G-G---C- G-C|agca|G U-C-G-g-gg (uagcg---- 1981 ---------- --------)c cc-U-G--G- C|-------G GA-A|GGU-A AUA-Gc-uu- 2041 ug--u-ug-| -aau------ ------|--- ---------- ---------- ---------- 2101 ---------- ---------- ggc-a--caa u|-------- ---------- ---------- 2161 ---------- ---------- ---------- --GGG|-CAA -|UC-CGCA| GCC|-AAg-- 2221 |CCCC----- ------(--- ---------- ---------- ---------- ---------- 2281 ---------- ----)|-|u| aa----|-gg ucc------- ---------- ---------- 2341 (u-uuu-ugu ---------- ---------- ---------- ---------- ---------- 2401 -------)-- ---------- ---------- ---------- ---------- -------|-- 2461 -----gg-gu cu-|a|u|-- ---------- GGGG|--AA| GGU|--UCA| CA-GACU-G| 2521 -UAA|GGG-A --G-GG|G|G Uuucuu---- ---------- -(ccaua--- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------) ---------- 2701 -aagaaGCU- |UAA-GA-GA |CA-GUC|G| -|GU-----| c----|cccu gc-------- 2761 ----(-GAAA ---------- )--------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---------- ---------- 2881 --|------- gc--a-g-u- g|-------- --|-ucucau g--------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- -|----ugag gaa|ggcgc- ccau(--gaa 3121 aa-------- ---------- ---------- ---------- ---------- ---------- 3181 ---------- ---------- -----)gugg g-cgcu|--- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ---------- ---------- ---------- ---------- ---------- ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- --|-ggaga- g--|------ ---------- --c---caug 4021 gga|------ --------|g cccuc----- ---------- ---------- ---------( 4081 uau------- ---------- ---------- ---------- ---------- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- --------|- ---------g a-gggu|--- ---------- -----gggga 4261 guuuuc(cua gauaauaaug a--------- ---------- )gaaacaaaa c--------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------| -----AC|G- -||uuc-cgu agguga| // LOCUS Por.y.8.1 4557 bp RNA RNA 08-SEP-1998 DEFINITION Porphyra yezoensis NA-4.. ACCESSION No information KEYWORDS No information. SOURCE Porphyra yezoensis NA-4. ORGANISM Porphyra yezoensis NA-4. REFERENCE 1 (bases 1 to 3004) AUTHORS . Kunimoto,M., Yamamoto,Y., Kito,H., Kaminishi,Y. and Mizukami,Y TITLE internal transcribed spacer 1 in Porphyra yezoensis (Rhodophyta) A molecular divergence of ssu rRNA gene and ribosomal JOURNAL Unpublished (1998) STANDARD No information COMMENTS Sequence information (bases 1 to 4557) Corresponding GenBank entry: AB017076 LOCUS AB017076 1175 bp DNA PLN 08-SEP-1998 DEFINITION Porphyra yezoensis DNA, internal transcribed spacer 1 (ITS1), strain: NA-4. ACCESSION AB017076 NID g3510352 KEYWORDS ssu rRNA; ITS1; 5.8S rRNA. SOURCE Porphyra yezoensis (strain:NA-4) gametophyte individual thallus DNA. ORGANISM Porphyra yezoensis Eukaryota; Rhodophyta; Bangiophyceae; Bangiales; Bangiaceae; Porphyra. REFERENCE 1 (sites) AUTHORS Kunimoto,M., Yamamoto,Y., Kito,H., Kaminishi,Y. and Mizukami,Y. TITLE A molecular divergence of ssu rRNA gene and ribosomal internal transcribed spacer 1 in Porphyra yezoensis (Rhodophyta) JOURNAL Unpublished (1998) REFERENCE 2 (bases 1 to 1175) AUTHORS Kunimoto,M., Yamamoto,Y., Kito,H., Kaminishi,Y. and Mizukami,Y. TITLE Direct Submission JOURNAL Submitted (21-AUG-1998) to the DDBJ/EMBL/GenBank databases. Masahiko Kunimoto, National Fisheries University, Department of Food Science; Nagatahon-machi 2-7-1, Shimonoseki, Yamaguchi 759-6595, Japan (E-mail:jkunimo@fish-u.ac.jp, Tel:0832-86-5111(ex.421), Fax:0832-86-2292) FEATURES Location/Qualifiers source 1..1175 /organism="Porphyra yezoensis" /note="collection_site: Nanaehama Hakodate Hokkaido" /strain="NA-4" /db_xref="taxon:2788" /dev_stage="gametophyte" /tissue_type="individual thallus" rRNA join(<1..218,745..774) /note="putative" /product="small subunit ribosomal RNA" intron 219..744 /note="group I intron; putative" misc_feature 775..1120 /note="ITS1; putative" rRNA 1121..>1175 /note="putative" /product="5.8S ribosomal RNA" BASE COUNT 290 a 291 c 315 g 279 t BASE COUNT 139 a 125 c 168 g 119 t 4006 others ORIGIN 1 |gucguaaca aggU||uuc- -------(-- ---------- ---------- ---------- 61 ---------- ---------- --)|------ ---------- ----c|---- ---------( 121 -------)-- ---------| --[guauuuu -guggauggg cacucguggc g(gucuuu-- 181 ---------- ---------- ---------- )gcgccaugc ggaugucc-- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- ---------- 661 ---------- ccuuccgu-a ggaaaacgua c]--|----- -------|-- ---------- 721 |---acg|-- --aaa|Gccu u---|----- ---------- ---|UGCG-- ---------- 781 gccc-(gaaa --)-g-ggu- ---------g cacagu---g cgcgacuau- ---------- 841 ---aaac-ac ugauu----- -----cugug gucaa----- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 -------CGC A|--A----- -----|GCA- GC-------- ---------- ---------- 1021 --(g------ ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- guucu(guga c--------- 1141 -----)agaa ca-------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 ---------- ---------- ---------- ---------- ---------- ---------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- ---------- -)-------- ---------- 1561 ---------- ---------- ---------- ---------- ---------- ---------- 1621 ---------- --G--CUGC| --GA|CUUU- C-U-C|AAAU |UG--C-GGG |AACA----| 1681 C-CC------ ---------- ---------- -|Ua------ ---------- ---------- 1741 ---------- ---------- ---------- ---------- --------AA GU|------C 1801 AA-------- CA-AA|C-AC C|-------- ---------- ---------- ---------- 1861 ---|GCG-G- CU-U-G---- -A-CGu(gaa a--------- ---------- ---------- 1921 ---------- -)GCGU--CA --G-G---C- G-C|agca|G U-C-G-g-gg (uagcg---- 1981 ---------- --------)c cc-U-G--G- C|-------G GA-A|GGU-A AUA-Gc-uu- 2041 ug--u-ug-| -aau------ ------|--- ---------- ---------- ---------- 2101 ---------- ---------- ggc-a--caa u|-------- ---------- ---------- 2161 ---------- ---------- ---------- --GGG|-CAA -|UC-CGCA| GCC|-AAg-- 2221 |CCCC----- ------(--- ---------- ---------- ---------- ---------- 2281 ---------- ----)|-|u| aa----|-gg ucc------- ---------- ---------- 2341 (u-uuu-ugu ---------- ---------- ---------- ---------- ---------- 2401 -------)-- ---------- ---------- ---------- ---------- -------|-- 2461 -----gg-gu cu-|a|u|-- ---------- GGGG|--AA| GGU|--UCA| CA-GACU-G| 2521 -UAA|GGG-A --G-GG|G|G Uuucuu---- ---------- -(ccaua--- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------) ---------- 2701 -aagaaGCU- |UAA-GA-GA |CA-GUC|G| -|GU-----| c----|cccu gc-------- 2761 ----(-GAAA ---------- )--------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---------- ---------- 2881 --|------- gc--a-g-u- g|-------- --|-ucucau g--------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- -|----ugag gaa|ggcgc- ccau(--gaa 3121 aa-------- ---------- ---------- ---------- ---------- ---------- 3181 ---------- ---------- -----)gugg g-cgcu|--- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ---------- ---------- ---------- ---------- ---------- ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- --|-ggaga- g--|------ ---------- --c---caug 4021 gga|------ --------|g cccuc----- ---------- ---------- ---------( 4081 uau------- ---------- ---------- ---------- ---------- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- --------|- ---------g a-gggu|--- ---------- -----gggga 4261 guuuuc(cua gauaauaaug a--------- ---------- )gaaacaaaa c--------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------| -----AC|G- -||uuc-cgu agguga| // LOCUS Por.ps.1.2 4557 bp RNA RNA 10-JUL-1998 DEFINITION Porphyra pseudolinearis. subsp. Porphyra pseudolinearis isolate Tohaku Tottori. str. misspelled pseudolinealis.. ACCESSION No information KEYWORDS No information. SOURCE Porphyra pseudolinearis. subsp. Porphyra pseudolinearis isolate Tohaku Tottori. str. misspelled pseudolinealis. ORGANISM Porphyra pseudolinearis. REFERENCE 1 (bases 1 to 3004) AUTHORS . Kunimoto,M., Yamamoto,Y., Kaminishi,Y., Mizukami,Y. and Kito,H TITLE the sequences of small subunit ribosomal RNA gene A discrimination of Porphyra species (Rhodophyta) based on JOURNAL Published Only in DataBase (1998) In press STANDARD No information COMMENTS Sequence information (bases 1 to 4557) Corresponding GenBank entry: AB013185 LOCUS AB013185 2983 bp DNA PLN 10-JUL-1998 DEFINITION Porphyra pseudolinealis gene for small subunit rRNA, isolate Tohaku Tottori. ACCESSION AB013185 NID g3298496 KEYWORDS small subunit ribosomal RNA; SSU rRNA. SOURCE Porphyra pseudolinealis gametophyte thallus DNA. ORGANISM Porphyra pseudolinealis Eukaryota; Rhodophyta; Bangiophyceae; Bangiales; Bangiaceae; Porphyra. REFERENCE 1 (bases 1 to 2983) AUTHORS Kunimoto,M., Yamamoto,Y., Kaminishi,Y., Mizukami,Y. and Kito,H. TITLE A discrimination of Porphyra species (Rhodophyta) based on the sequences of small subunit ribosomal RNA gene JOURNAL Published Only in DataBase (1998) In press REFERENCE 2 (bases 1 to 2983) AUTHORS Kunimoto,M., Yamamoto,Y., Kaminishi,Y., Mizukami,Y. and Kito,H. TITLE Direct Submission JOURNAL Submitted (21-APR-1998) to the DDBJ/EMBL/GenBank databases. Masahiko Kunimoto, National Fisheries University, Food Science; Nagatahon-machi 2-7-1, Shimonoseki, Yamaguchi 759-6595, Japan (E-mail:jkunimo@fish-u.ac.jp, Tel:0832-86-5111, Fax:0832-86-2292) FEATURES Location/Qualifiers source 1..2983 /organism="Porphyra pseudolinealis" /note="collection_site: Tohaku Tottori" /db_xref="taxon:76162" /dev_stage="gametophyte" /tissue_type="thallus" primer_bind 1..22 /note="PCR primer" precursor_RNA <1..>2983 /note="precursor of small subunit ribosomal RNA (SSU rRNA)" exon 23..568 /note="putative" /product="SSU rRNA" intron 569..1135 /note="putative" exon 1136..2372 /note="putative" /product="SSU rRNA" intron 2373..2953 /note="group I intron; putative" exon 2954..2983 /note="putative" /product="SSU rRNA" BASE COUNT 754 a 658 c 835 g 736 t BASE COUNT 151 a 141 c 183 g 131 t 3951 others ORIGIN 1 |gucguaaca aggU||uuc- -------(-- ---------- ---------- ---------- 61 ---------- ---------- --)|------ ---------- ----c|---- ---------( 121 -------)-- ---------| --[guauuuu -guggaugga aaaaacgccg acgcccuccu 181 cgguug(cgu g)caacuugg gggcu---gg cuggcugcgu ccuuuuuu-- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- ---------- 661 ---------- ccuuccgu-a ggaaaacgua c]--|----- -------|-- ---------- 721 |----ac|-- --gaa|Gccu u---|----- ---------- ---|UGCG-- ---------- 781 gccc-(gaaa --)-g-ggu- ---------g cacagu---g cgcgacuau- ---------- 841 ---aaac-ac ugaga----- -----cugug gucaa----- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 -------CGC A|--A----- -----|GCA- GC-------- ---------- ---------- 1021 --(ggu---- ---------- ---------- ---------u cgag------ ---------- 1081 ---------- ---------- ---------- ---------- -uggg(aaaa aaaaaaaa-- 1141 -----)ccca gagca----- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 ---------- ---------- ---------- ---------- ---------- ---------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- ---------- -)-------- ---------- 1561 ---------- ---------- ---------- ---------- ---------- ---------- 1621 ---------- --G--CUGC| --GA|CUUU- C-U-C|AAAU |UG--C-GGG |AACA----| 1681 C-CC------ ---------- ---------- -|Ua------ ---------- ---------- 1741 ---------- ---------- ---------- ---------- --------AA GU|------C 1801 AA-------- CG-AG|C-AC C|-------- ---------- ---------- ---------- 1861 ---|GCG-G- CU-U-G---- -A-CGu(gaa aa-------- ---------- ---------- 1921 ---------- -)-CGU--CA --G-G---C- G-C|agca|G U-C-G-g-gg (uagcg---- 1981 ---------- --------)c cc-U-G--G- C|-------G GA-U|GGU-A ACA-Gc-uu- 2041 ug--u-ug-| -aau------ ------|--- ---------- ---------- ---------- 2101 ---------- ---------- ggc-a--caa u|-------- ---------- ---------- 2161 ---------- ---------- ---------- --GGG|-CAA -|UC-CGCA| GCC|-AAg-- 2221 |CCCC----- ------(--- ---------- ---------- ---------- ---------- 2281 ---------- ----)|-|u| ac----|gg- ucc------- ---------- ---------- 2341 (u-uuu-uuu ccu------- ---------- ---------- ---------- ---------- 2401 -------)-- ---------- ---------- ---------- ---------- -------|-- 2461 -----gg-g- cu-|a|u|-- ---------- GGGG|--AA| GGU|--UCA| CA-GACU-G| 2521 -UAU|GGG-A --G-GG|G|G Uuuuuucucu ---------- -(auau---- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------) -------aga 2701 gaaaaaGCU- |GAA-GA-GA |CA-GUC|G| -|GU-----| c----|cccu gc-------- 2761 ----(-GAGA ---------- )--------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---------- ---------- 2881 --|------- gc--a-g-u- g|-------- --|-ucgcau g--------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- -|----ugag gaa|ggcac- ccau(--gaa 3121 aa-------- ---------- ---------- ---------- ---------- ---------- 3181 ---------- ---------- -----)gugg g-cgcu|--- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ---------- ---------- ---------- ---------- ---------- ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- --|-ggaga- g--|------ ---------- --c---caug 4021 uga|------ --------|g cccucu---- ---------- ---------- ---------( 4081 auucuua--- ---------- ---------- ---------- ---------- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- --------|- --------gg a-gggu|--- ---------- -----gggaa 4261 guuuuc(cga uacuauga-- ---------- ---------- )gaaacacgc ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------| -----AC|G- -||uuc-cgu agguga| // LOCUS Por.k.1.2 4557 bp RNA RNA 09-JUL-1998 DEFINITION Porphyra katadae. subsp. Porphyra katadae isolate Kawatana Yamaguchi. ACCESSION No information KEYWORDS No information. SOURCE Porphyra katadae. subsp. Porphyra katadae isolate Kawatana Yamaguchi. ORGANISM Porphyra katadae. REFERENCE 1 (bases 1 to 3004) AUTHORS . Kunimoto,M., Yamamoto,Y., Kaminishi,Y., Mizukami,Y. and Kito,H TITLE the sequences of small subunit ribosomal RNA gene A discrimination of Porphyra species (Rhodophyta) based on JOURNAL Published Only in DataBase (1998) In press STANDARD No information COMMENTS Sequence information (bases 1 to 4557) Corresponding GenBank entry: AB013184 LOCUS AB013184 3024 bp DNA PLN 09-JUL-1998 DEFINITION Porphyra katadae gene for small subunit rRNA, isolate Kawatana Yamaguchi. ACCESSION AB013184 NID g3298495 KEYWORDS small subunit ribosomal RNA; SSU rRNA. SOURCE Porphyra katadae gametophyte thallus DNA. ORGANISM Porphyra katadae Eukaryota; Rhodophyta; Bangiophyceae; Bangiales; Bangiaceae; Porphyra. REFERENCE 1 (bases 1 to 3024) AUTHORS Kunimoto,M., Yamamoto,Y., Kaminishi,Y., Mizukami,Y. and Kito,H. TITLE A discrimination of Porphyra species (Rhodophyta) based on the sequences of small subunit ribosomal RNA gene JOURNAL Published Only in DataBase (1998) In press REFERENCE 2 (bases 1 to 3024) AUTHORS Kunimoto,M., Yamamoto,Y., Kaminishi,Y., Mizukami,Y. and Kito,H. TITLE Direct Submission JOURNAL Submitted (21-APR-1998) to the DDBJ/EMBL/GenBank databases. Masahiko Kunimoto, National Fisheries University, Food Science; Nagatahon-machi 2-7-1, Shimonoseki, Yamaguchi 759-6595, Japan (E-mail:jkunimo@fish-u.ac.jp, Tel:0832-86-5111, Fax:0832-86-2292) FEATURES Location/Qualifiers source 1..3024 /organism="Porphyra katadae" /note="collection_site: Kawatana Yamaguchi" /db_xref="taxon:76161" /dev_stage="gametophyte" /tissue_type="thallus" primer_bind 1..22 /note="PCR primer" precursor_RNA <1..>3024 /note="precursor of small subunit ribosomal RNA (SSU rRNA)" exon 23..568 /note="putative" /product="SSU rRNA" intron 569..1169 /note="putative" exon 1170..2406 /note="putative" /product="SSU rRNA" intron 2407..2994 /note="group I intron; putative" exon 2995..3024 /note="putative" /product="SSU rRNA" BASE COUNT 758 a 677 c 856 g 733 t BASE COUNT 148 a 144 c 189 g 132 t 3944 others ORIGIN 1 |gucguaaca aggU||uuc- -------(-- ---------- ---------- ---------- 61 ---------- ---------- --)|------ ---------- ----c|---- ---------( 121 -------)-- ---------| --[guauuuu -guggaugga caacaaucaa acaacagacg 181 (uuucugu-- -)uguugguu ggu------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- ---------- 661 ---------- ccuuccgu-g ggaagacgua c]--|----- -------|-- ---------- 721 |----au|-- --gaa|Gccu u---|----- ---------- ---|UGCA-- ---------- 781 gccc-(gaaa --)-g-ggu- ---------g cacagu---g cgcgacuau- ---------- 841 ---aaau-ac ugauu----- -----cugug gucaa----- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 -------UGC A|--A----- -----|GCA- GC-------- ---------- ---------- 1021 --(g------ ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------g cgccaaaaaa aaggg(ccu- ---------- 1141 -----)uucg cccugacggc gca------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 ---------- ---------- ---------- ---------- ---------- ---------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- ---------- -)-------- ---------- 1561 ---------- ---------- ---------- ---------- ---------- ---------- 1621 ---------- --G--CUGC| --GA|CUUU- C-U-C|AAAU |UG--C-GGG |AACU----| 1681 C-CC------ ---------- ---------- -|Ua------ ---------- ---------- 1741 ---------- ---------- ---------- ---------- --------AA GC|------C 1801 AG-------- CA-AA|U-AC C|-------- ---------- ---------- ---------- 1861 ---|GCG-G- CC-U-G---- -G-CG-(gac aaa------- ---------- ---------- 1921 ---------- -)-CGU--CG --G-G---U- G-C|agca|G U-C-G-g-gg (uagcg---- 1981 ---------- --------)c cc-U-G--A- U|-------G GA-U|GGU-A ACA-Ac-uu- 2041 ug--c-ug-| -gau------ ------|--- -------aga g---cgcccu uu(uugu--- 2101 ---)gggggg gg----cucu a--------a u|-------- ---------- ---------- 2161 ---------- ---------- ---------- --GGG|-CAA -|UC-CGCA| GCC|-AAg-- 2221 |CUCC----- ------(--- ---------- ---------- ---------- ---------- 2281 ---------- ----)|-|g| cg----|ucc ccc------- ---------- ---------- 2341 (u-cu----- ---------- ---------- ---------- ---------- ---------- 2401 -------)-- ---------- ---------- ---------- ---------- -------|-- 2461 -----gg-gg ga-|g|-|-- ---------- GGAG|--AA| GGU|--UCA| CA-GACU-G| 2521 -UAA|GGG-A --A-GG|G|G Uucucu---- ---------- -(auuuuc-- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------) ---------- 2701 -agaggGCU- |UAA-GA-GA |CA-GUC|G| -|GU-----| c----|cccu gc-------- 2761 ----(-GAAA ---------- )--------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---------- ---------- 2881 --|------- gc--a-g-u- g|-------- --|-ucucau a--------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- -|----ugag gaa|agcgc- ccau(--gaa 3121 aa-------- ---------- ---------- ---------- ---------- ---------- 3181 ---------- ---------- -----)gugg g-ugcu|--- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ---------- ---------- ---------- ---------- ---------- ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- --|-ggaga- g--|------ ---------- --c---uaug 4021 aga|------ --------|g ccca------ ---------- ---------- ---------( 4081 uugcgggcgu cgccugcgac gcaccu---- ---------- ---------- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- --------|- ---------- u-gggu|--- ---------- -----gggga 4261 guuuuc(cua gauaauga-- ---------- ---------- )gaaacaaac ac-------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------| -----AC|G- -||uuc-cgu agguga| // LOCUS Por.te.4.2 4557 bp RNA RNA 09-JUL-1998 DEFINITION Porphyra tenera. subsp. Porphyra tenera isolate Kawaura Kumamoto.. ACCESSION No information KEYWORDS No information. SOURCE Porphyra tenera. subsp. Porphyra tenera isolate Kawaura Kumamoto. ORGANISM Porphyra tenera. REFERENCE 1 (bases 1 to 3004) AUTHORS Kunimoto,M., Yamamoto,Y., Kaminishi,Y., Mizukami,Y. and Kito,H . TITLE A discrimination of Porphyra species (Rhodophyta) based on the sequences of small subunit ribosomal RNA gene JOURNAL Published Only in DataBase (1998) In press STANDARD No information COMMENTS Sequence information (bases 1 to 4557) Corresponding GenBank entry: AB013176 LOCUS AB013176 3589 bp DNA PLN 09-JUL-1998 DEFINITION Porphyra tenera gene for small subunit rRNA, isolate Kawaura Kumamoto. ACCESSION AB013176 NID g3298487 KEYWORDS small subunit ribosomal RNA; SSU rRNA. SOURCE Porphyra tenera gametophyte thallus DNA. ORGANISM Porphyra tenera Eukaryota; Rhodophyta; Bangiophyceae; Bangiales; Bangiaceae; Porphyra. REFERENCE 1 (bases 1 to 3589) AUTHORS Kunimoto,M., Yamamoto,Y., Kaminishi,Y., Mizukami,Y. and Kito,H. TITLE A discrimination of Porphyra species (Rhodophyta) based on the sequences of small subunit ribosomal RNA gene JOURNAL Published Only in DataBase (1998) In press REFERENCE 2 (bases 1 to 3589) AUTHORS Kunimoto,M., Yamamoto,Y., Kaminishi,Y., Mizukami,Y. and Kito,H. TITLE Direct Submission JOURNAL Submitted (21-APR-1998) to the DDBJ/EMBL/GenBank databases. Masahiko Kunimoto, National Fisheries University, Food Science; Nagatahon-machi 2-7-1, Shimonoseki, Yamaguchi 759-6595, Japan (E-mail:jkunimo@fish-u.ac.jp, Tel:0832-86-5111, Fax:0832-86-2292) FEATURES Location/Qualifiers source 1..3589 /organism="Porphyra tenera" /note="collection_site: Kawaura Kumamoto" /db_xref="taxon:2785" /dev_stage="gametophyte" /tissue_type="thallus" primer_bind 1..22 /note="PCR primer" precursor_RNA <1..>3589 /note="precursor of small subunit ribosomal RNA (SSU rRNA)" exon 23..568 /note="putative" /product="SSU rRNA" intron 569..1540 /note="putative" exon 1541..2776 /note="putative" /product="SSU rRNA" intron 2777..3559 /note="group I intron; putative" exon 3560..3589 /note="putative" /product="SSU rRNA" BASE COUNT 906 a 808 c 1019 g 856 t BASE COUNT 199 a 183 c 245 g 176 t 3754 others ORIGIN 1 |~~~~~aaca aggU||uuc- -------(-- ---------- ---------- ---------- 61 ---------- ---------- --)|------ ---------- ----c|---- ---------( 121 -------)-- ---------| --[guauuuu -gugggugga uaccgauuca auaacauccg 181 ccguuuuucu caauguacua uaucccuagu cugcuugccu aguucuugga gucuugugcg 241 augugugcua uuacaggcau gccgggucau gaagacagac aagguuggga ucuucacgga 301 aguacgcgca auaggagcgc gucuuguuca acgcacccga cucaagaguc auaugcgagg 361 gacggacgca gcgcuugucg ccg-cacaga ugg(gacg-- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- -cg)ccauau cggagacagg 601 gggacgugcc auugugauga ugaugaugau guuguugggu ggu------- ---------- 661 ---------- ccuuccgu-a ggaaaacgua c]--|----- -------|-- ---------- 721 |----ac|-- --gaa|Gccu u---|----- ---------- ---|UGCG-- ---------- 781 gccc-(gaaa --)-g-ggu- ---------g cacagu---g cgcgacuau- ---------- 841 ---aaac-ac ugauu----- -----cugug gucaa----- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 -------CGC A|--A----- -----|GCA- GC-------- ---------- ---------- 1021 --(g------ ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- guucu(gugg a--------- 1141 -----)agaa ca-------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 ---------- ---------- ---------- ---------- ---------- ---------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- ---------- -)-------- ---------- 1561 ---------- ---------- ---------- ---------- ---------- ---------- 1621 ---------- --G--CUGC| --GA|CUUU- C-U-C|AAAU |UG--C-GGG |AACA----| 1681 C-CC------ ---------- ---------- -|Ua------ ---------- ---------- 1741 ---------- ---------- ---------- ---------- --------AA GU|------C 1801 AA-------- CA-AA|C-AC C|-------- ---------- ---------- ---------- 1861 ---|GCG-G- CC-G-G---- -A-CGu(gaa a--------- ---------- ---------- 1921 ---------- -)GCGU--CA --G-G---C- G-C|agca|G U-C-G-g-gg (uagcg---- 1981 ---------- --------)c cc-U-G--G- U|-------G GA-A|GGU-A AUA-Gc-uu- 2041 ug--u-ug-| -aau------ ------|--- ---------- ---------- ---------- 2101 ---------- ---------- ggc-a--caa u|-------- ---------- ---------- 2161 ---------- ---------- ---------- --GGG|-CAA -|UC-CGCA| GCC|-AAg-- 2221 |CCCC----- ------(--- ---------- ---------- ---------- ---------- 2281 ---------- ----)|-|u| aa----|gg- ucc------- ---------- ---------- 2341 (c-ccg-cu- ---------- ---------- ---------- ---------- ---------- 2401 -------)-- ---------- ---------- ---------- ---------- -------|-- 2461 -----gg-g- cu-|a|u|-- ---------- GGGG|--AA| GGU|--UCA| CA-GACU-G| 2521 -UAA|GGG-A --G-GG|G|G Uuucuu---- ---------- -(ccauga-- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------) ---------- 2701 -aagaaGCU- |UAA-GA-GA |CA-GUC|G| -|GU-----| c----|cccu gc-------- 2761 ----(-GAGA ---------- )--------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---------- ---------- 2881 --|------- gc--a-g-u- g|-------- --|-ucgcau ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- -|---gugag gaa|ggcac- ccau(--gaa 3121 aa-------- ---------- ---------- ---------- ---------- ---------- 3181 ---------- ---------- -----)gugg g-ugcu|--- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ---------- ---------- ---------- ---------- ---------- ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- --|-ggaga- g--|------ ---------- --c---caug 4021 uga|------ --------|g cccuc----- ---------- ---------- ---------( 4081 uau------- ---------- ---------- ---------- ---------- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- --------|- ---------g a-gggu|--- ---------- -----gggaa 4261 guuuuc(cga uacaauga-- ---------- ---------- )gaaacaaac ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------| -----AC|G- -||uuc-cgu agguga| // LOCUS Por.te.5.2 4557 bp RNA RNA 09-JUL-1998 DEFINITION Porphyra tenera.. ACCESSION No information KEYWORDS No information. SOURCE Porphyra tenera. ORGANISM Porphyra tenera. REFERENCE 1 (bases 1 to 3004) AUTHORS . Kunimoto,M., Yamamoto,Y., Kaminishi,Y., Mizukami,Y. and Kito,H TITLE the sequences of small subunit ribosomal RNA gene A discrimination of Porphyra species (Rhodophyta) based on JOURNAL Published Only in DataBase (1998) In press STANDARD No information COMMENTS Sequence information (bases 1 to 4557) Corresponding GenBank entry: AB013175 LOCUS AB013175 3766 bp DNA PLN 09-JUL-1998 DEFINITION Porphyra tenera gene for small subunit rRNA, isolate Shinwa Kumamoto. ACCESSION AB013175 NID g3298480 KEYWORDS small subunit ribosomal RNA; SSU rRNA. SOURCE Porphyra tenera gametophyte thallus DNA. ORGANISM Porphyra tenera Eukaryota; Rhodophyta; Bangiophyceae; Bangiales; Bangiaceae; Porphyra. REFERENCE 1 (bases 1 to 3766) AUTHORS Kunimoto,M., Yamamoto,Y., Kaminishi,Y., Mizukami,Y. and Kito,H. TITLE A discrimination of Porphyra species (Rhodophyta) based on the sequences of small subunit ribosomal RNA gene JOURNAL Published Only in DataBase (1998) In press REFERENCE 2 (bases 1 to 3766) AUTHORS Kunimoto,M., Yamamoto,Y., Kaminishi,Y., Mizukami,Y. and Kito,H. TITLE Direct Submission JOURNAL Submitted (21-APR-1998) to the DDBJ/EMBL/GenBank databases. Masahiko Kunimoto, National Fisheries University, Food Science; Nagatahon-machi 2-7-1, Shimonoseki, Yamaguchi 759-6595, Japan (E-mail:jkunimo@fish-u.ac.jp, Tel:0832-86-5111, Fax:0832-86-2292) FEATURES Location/Qualifiers source 1..3766 /organism="Porphyra tenera" /note="collection_site: Shinwa Kumamoto" /db_xref="taxon:2785" /dev_stage="gametophyte" /tissue_type="thallus" primer_bind 1..22 /note="PCR primer" precursor_RNA <1..>3766 /note="precursor of small subunit ribosomal RNA (SSU rRNA)" exon 23..568 /note="putative" /product="SSU rRNA" intron 569..1540 /note="putative" exon 1541..2776 /note="putative" /product="SSU rRNA" intron 2777..3736 /note="group I intron; putative" exon 3737..3766 /note="putative" /product="SSU rRNA" BASE COUNT 942 a 858 c 1067 g 899 t BASE COUNT 235 a 233 c 293 g 219 t 3577 others ORIGIN 1 |~~~~~aaca aggU||uuc- -------(-- ---------- ---------- ---------- 61 ---------- ---------- --)|------ ---------- ----c|---- ---------( 121 -------)-- ---------| --[guauuuu -gugggugga uaccgauuca auaacauccg 181 ccguuuuucu caauguacua uaucccuagu cugcuugccu aguucuugga gucuugugcg 241 augugugcua uuacaggcau gccgggucau gaagacagac aagguuggga ucuucacgga 301 aguacgcgca auaggagcgc gucuuguuca acgcacccga cucaagaguc auaugcgaag 361 gacggacgca gcgcuugucg ccg-cacaga ugg(gaa-cu uccucuccag gcauaggaug 421 gcgcugcauu ugcaucaccg cu-gcua-ag uaaguggcaa uaauacuuga cucccccgcc 481 agcgcacuug uacguagccg uuggcggcgg gaacguaguu ggugauguga cagccuugag 541 cguucaccuc uguguguccg cc-aaucugc acaaagaugg acg)ccauau cggagacagg 601 gggaggugcc auugugauga u---gacgau guuguugggu ggu------- ---------- 661 ---------- ccuuccgu-a ggaagacgua c]--|----- -------|-- ---------- 721 |----ac|-- --gaa|Gccu u---|----- ---------- ---|UGCG-- ---------- 781 gccc-(gaaa --)-g-ggu- ---------g cacagu---g cgcgacuau- ---------- 841 ---aaac-ac ugauu----- -----cugug gucaa----- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 -------CGC A|--A----- -----|GCA- GC-------- ---------- ---------- 1021 --(g------ ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- guucu(gugg a--------- 1141 -----)agaa ca-------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 ---------- ---------- ---------- ---------- ---------- ---------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- ---------- -)-------- ---------- 1561 ---------- ---------- ---------- ---------- ---------- ---------- 1621 ---------- --G--CUGC| --GA|CUUU- C-U-C|AAAU |UG--C-GGG |AACA----| 1681 C-CC------ ---------- ---------- -|Ua------ ---------- ---------- 1741 ---------- ---------- ---------- ---------- --------AA GU|------C 1801 AA-------- CA-AG|C-AC C|-------- ---------- ---------- ---------- 1861 ---|GCG-G- CU-U-G---- -A-CGu(gaa aa-------- ---------- ---------- 1921 ---------- -)GCGU--CA --G-G---C- G-C|agca|G U-C-G-g-gg (uagcg---- 1981 ---------- --------)c cc-U-G--G- C|-------G GA-U|GGU-A AUA-Gc-cu- 2041 ug--u-ug-| -aau------ ------|--- ---------- ---------- ---------- 2101 ---------- ---------- ggc-a--caa u|-------- ---------- ---------- 2161 ---------- ---------- ---------- --GGG|-CAA -|UC-CGCA| GCC|-AAg-- 2221 |CCCC----- ------(--- ---------- ---------- ---------- ---------- 2281 ---------- ----)|-|u| aa----|gg- ucc------- ---------- ---------- 2341 (c-ccg-cu- ---------- ---------- ---------- ---------- ---------- 2401 -------)-- ---------- ---------- ---------- ---------- -------|-- 2461 -----gg-g- cu-|a|u|-- ---------- GGGG|--AA| GGU|--UCA| CA-GACU-G| 2521 -UAA|GGG-A --G-GG|G|G Uuucuu---- ---------- -(ccauga-- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------) ---------- 2701 -aagaaGCU- |UAA-GA-GA |CA-GUC|G| -|GU-----| c----|cccu gc-------- 2761 ----(-GAGA ---------- )--------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---------- ---------- 2881 --|------- gc--a-g-u- g|-------- --|-ucgcau ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- -|---gugag gaa|ggcac- ccau(--gaa 3121 aa-------- ---------- ---------- ---------- ---------- ---------- 3181 ---------- ---------- -----)gugg g-ugcu|--- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ---------- ---------- ---------- ---------- ---------- ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- --|-ggaga- g--|------ ---------- --c---caug 4021 uga|------ --------|g cccuc----- ---------- ---------- ---------( 4081 uau------- ---------- ---------- ---------- ---------- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- --------|- ---------g a-gggu|--- ---------- -----gggaa 4261 guuuuc(cga uacaauga-- ---------- ---------- )gaaacaaac ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------| -----AC|G- -||uuc-cgu agguga| // LOCUS Por.te.6.2 4557 bp RNA RNA 16-JUL-1999 DEFINITION Porphyra tenera.. ACCESSION No information KEYWORDS No information. SOURCE Porphyra tenera. ORGANISM Porphyra tenera. REFERENCE 1 (bases 1 to 3004) AUTHORS Kunimoto,M., Kaminishi,Y., Mizukami,Y., Kito,H., Murase,N. and Yoshida,T. TITLE Molecular divergence of the ssu rRNA gene and internal transcribed spacer 1 in Porphyra tenera (Rhodophyta) JOURNAL Published Only in DataBase (1999) In press STANDARD No information COMMENTS Sequence information (bases 1 to 4557) Corresponding GenBank entry: AB029879 LOCUS AB029879 4168 bp DNA PLN 16-JUL-1999 DEFINITION Porphyra tenera DNA, 18S rRNA, ITS 1, 5.8S rRNA region, strain:Shinwa-2. ACCESSION AB029879 NID g5509934 VERSION AB029879.1 GI:5509934 KEYWORDS 18S rRNA; 18S ribosomal RNA; 5.8S rRNA; ssu rRNA; 5.8S ribosomal RNA. SOURCE Porphyra tenera (strain:Shinwa-2, isolate:Shinwa Kumamoto) gametophyte individual thallus DNA. ORGANISM Porphyra tenera Eukaryota; Rhodophyta; Bangiophyceae; Bangiales; Bangiaceae; Porphyra. REFERENCE 1 (bases 1 to 4168) AUTHORS Kunimoto,M., Kaminishi,Y., Mizukami,Y., Kito,H., Murase,N. and Yoshida,T. TITLE Molecular divergence of the ssu rRNA gene and internal transcribed spacer 1 in Porphyra tenera (Rhodophyta) JOURNAL Published Only in DataBase (1999) In press REFERENCE 2 (bases 1 to 4168) AUTHORS Kunimoto,M., Kaminishi,Y., Mizukami,Y., Kito,H., Murase,N. and Yoshida,T. TITLE Direct Submission JOURNAL Submitted (09-JUL-1999) to the DDBJ/EMBL/GenBank databases. Masahiko Kunimoto, National Fisheries University, Department of Food Science; Nagatahon-machi 2-7-1, Shimonoseki, Yamaguchi 759-6595, Japan (E-mail:jkunimo@fish-u.ac.jp, Tel:81-832-86-5111(ex.421), Fax:81-832-86-2292) FEATURES Location/Qualifiers source 1..4168 /organism="Porphyra tenera" /isolate="Shinwa Kumamoto" /strain="Shinwa-2" /db_xref="taxon:2785" /dev_stage="gametophyte" /tissue_type="individual thallus" primer_bind 1..22 exon 23..568 /note="putative" /product="ssu rRNA" rRNA join(23..568,1541..2776,3736..3765) /product="18S rRNA" intron 569..1540 /note="putative" exon 1541..2776 /note="putative" /product="ssu rRNA" intron 2777..3735 /note="group I intron;putative" exon 3736..3765 /note="putative" /product="ssu rRNA" misc_RNA 3766..4122 /note="ITS 1; putative" rRNA 4123..>4168 /note="putative" /product="5.8S rRNA" BASE COUNT 1039 a 965 c 1157 g 1007 t BASE COUNT 233 a 233 c 297 g 221 t 3573 others ORIGIN 1 |gucguaaca aggU||uuc- -------(-- ---------- ---------- ---------- 61 ---------- ---------- --)|------ ---------- ----c|---- ---------( 121 -------)-- ---------| --[guauuuu -gugggugga uaccgauuca auaacauccg 181 ccguuuuucu caauguacua uaucccuagu cugcuugccu aguucuugga gucuugugcg 241 augugugcua uuacaggcau gccgggucau gaagacagac aagguuggga ucuucacgga 301 aguacgcgca auaggagcgc gucuuguuca acgcacccga cucaagaguc auaugcga-g 361 ggacggacgc agcgcuuguc gccgcacaga ugggaag-cu uccucuccag gcauaggaug 421 gcgcugcauu ugcaucaccg cu-gcua--g uaaguggcaa uaauacuuga cu-ccccgcc 481 agcgcacuug uacguagccg uuggcggcgg gaacguaguu ggugauguga cagccuugag 541 cguucaccuc uguguguccg cc-aaucugc acaaagaugg acg)ccauau cggagacagg 601 gggaggugcc auugugauga u---gacgau guuguugggu ggu------- ---------- 661 ---------- ccuuccgu-a ggaagacgua c]--|----- -------|-- ---------- 721 |----ac|-- --gaa|Gccu u---|----- ---------- ---|UGCG-- ---------- 781 gccc-(gaaa --)-g-ggu- ---------g cacagu---g cgcgacuau- ---------- 841 ---aaac-ac ugauu----- -----cugug gucaa----- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 -------CGC A|--A----- -----|GCA- GC-------- ---------- ---------- 1021 --(g------ ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- guucu(gugg a--------- 1141 -----)agaa ca-------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 ---------- ---------- ---------- ---------- ---------- ---------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- ---------- -)-------- ---------- 1561 ---------- ---------- ---------- ---------- ---------- ---------- 1621 ---------- --G--CUGC| --GA|CUUU- C-U-C|AAAU |UG--C-GGG |AACA----| 1681 C-CC------ ---------- ---------- -|Ua------ ---------- ---------- 1741 ---------- ---------- ---------- ---------- --------AA GU|------C 1801 AA-------- CA-AG|C-AC C|-------- ---------- ---------- ---------- 1861 ---|GCG-G- CU-U-G---- -A-CGu(gaa aa-------- ---------- ---------- 1921 ---------- -)GCGU--CA --G-G---C- G-C|agca|G U-C-G-g-gg (uagcg---- 1981 ---------- --------)c cc-U-G--G- C|-------G GA-U|GGU-A AUA-Gc-cu- 2041 ug--u-ug-| -aau------ ------|--- ---------- ---------- ---------- 2101 ---------- ---------- ggc-a--caa u|-------- ---------- ---------- 2161 ---------- ---------- ---------- --GGG|-CAA -|UC-CGCA| GCC|-AAg-- 2221 |CCCC----- ------(--- ---------- ---------- ---------- ---------- 2281 ---------- ----)|-|u| aa----|gg- ucc------- ---------- ---------- 2341 (c-ccg-cu- ---------- ---------- ---------- ---------- ---------- 2401 -------)-- ---------- ---------- ---------- ---------- -------|-- 2461 -----gg-g- cu-|a|u|-- ---------- GGGG|--AA| GGU|--UCA| CA-GACU-G| 2521 -UAA|GGG-A --G-GG|G|G Uuucuu---- ---------- -(ccauga-- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------) ---------- 2701 -aagaaGCU- |UAA-GA-GA |CA-GUC|G| -|GU-----| c----|cccu gc-------- 2761 ----(-GAGA ---------- )--------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---------- ---------- 2881 --|------- gc--a-g-u- g|-------- --|-ucgcau g--------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- -|----ugag gaa|ggcac- ccau(--gaa 3121 aa-------- ---------- ---------- ---------- ---------- ---------- 3181 ---------- ---------- -----)gugg g-ugcu|--- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ---------- ---------- ---------- ---------- ---------- ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- --|-ggaga- g--|------ ---------- --c---caug 4021 uga|------ --------|g cccuc----- ---------- ---------- ---------( 4081 uau------- ---------- ---------- ---------- ---------- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- --------|- ---------g a-gggu|--- ---------- -----gggaa 4261 guuuuc(cga uacaauga-- ---------- ---------- )gaaacaaac ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------| -----AC|G- -||uuc-cgu agguga| // LOCUS Por.te.7.2 4557 bp RNA RNA 16-JUL-1999 DEFINITION Porphyra tenera.. ACCESSION No information KEYWORDS No information. SOURCE Porphyra tenera. ORGANISM Porphyra tenera. REFERENCE 1 (bases 1 to 3004) AUTHORS Yoshida,T. Kunimoto,M., Kaminishi,Y., Mizukami,Y., Kito,H., Murase,N. and TITLE transcribed spacer 1 in Porphyra tenera (Rhodophyta) Molecular divergence of the ssu rRNA gene and internal JOURNAL Published Only in DataBase (1999) In press STANDARD No information COMMENTS Sequence information (bases 1 to 4557) Corresponding GenBank entry: AB029880 LOCUS AB029880 3994 bp DNA PLN 16-JUL-1999 DEFINITION Porphyra tenera DNA, 18S rRNA, ITS 1, 5.8S rRNA region, strain:Shinwa-3. ACCESSION AB029880 NID g5509935 VERSION AB029880.1 GI:5509935 KEYWORDS 18S rRNA; 18S ribosomal RNA; 5.8S rRNA; ssu rRNA; 5.8S ribosomal RNA. SOURCE Porphyra tenera (strain:Shinwa-3, isolate:Shinwa Kumamoto) gametophyte individual thallus DNA. ORGANISM Porphyra tenera Eukaryota; Rhodophyta; Bangiophyceae; Bangiales; Bangiaceae; Porphyra. REFERENCE 1 (bases 1 to 3994) AUTHORS Kunimoto,M., Kaminishi,Y., Mizukami,Y., Kito,H., Murase,N. and Yoshida,T. TITLE Molecular divergence of the ssu rRNA gene and internal transcribed spacer 1 in Porphyra tenera (Rhodophyta) JOURNAL Published Only in DataBase (1999) In press REFERENCE 2 (bases 1 to 3994) AUTHORS Kunimoto,M., Kaminishi,Y., Mizukami,Y., Kito,H., Murase,N. and Yoshida,T. TITLE Direct Submission JOURNAL Submitted (09-JUL-1999) to the DDBJ/EMBL/GenBank databases. Masahiko Kunimoto, National Fisheries University, Department of Food Science; Nagatahon-machi 2-7-1, Shimonoseki, Yamaguchi 759-6595, Japan (E-mail:jkunimo@fish-u.ac.jp, Tel:81-832-86-5111(ex.421), Fax:81-832-86-2292) FEATURES Location/Qualifiers source 1..3994 /organism="Porphyra tenera" /isolate="Shinwa Kumamoto" /strain="Shinwa-3" /db_xref="taxon:2785" /dev_stage="gametophyte" /tissue_type="individual thallus" primer_bind 1..22 /note="PCR primer" exon 23..568 /note="putative" /product="ssu rRNA" rRNA join(23..568,1541..2776,3560..3589) /product="18S rRNA" intron 569..1540 /note="putative" exon 1541..2776 /note="putative" /product="ssu rRNA" intron 2777..3559 /note="group I intron;putative" exon 3560..3589 /note="putative" /product="ssu rRNA" misc_RNA 3590..3948 /note="ITS 1; putative" rRNA 3949..>3994 /note="putative" /product="5.8S rRNA" BASE COUNT 1006 a 916 c 1107 g 965 t BASE COUNT 199 a 184 c 247 g 178 t 3749 others ORIGIN 1 |gucguaaca aggU||uuc- -------(-- ---------- ---------- ---------- 61 ---------- ---------- --)|------ ---------- ----c|---- ---------( 121 -------)-- ---------| --[guauuuu -gugggugga uaccgauuca auaacauccg 181 ccguuuuucu caauguacua uaucccuagu cugcuugccu aguucuugga gucuugugcg 241 augugugcua uuacaggcau gccgggucau gaagacagac aagguuggga ucuucacgga 301 aguacgcgca auaggagcgc gucuuguuca acgcacccga cucaagaguc auaugcgagg 361 gacggacgca gcgcuugucg ccg-cacaga ugg(ga---- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------c g--------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- -cg)ccauau cggagacagg 601 gggacgugcc auugugauga ugaugaugau guuguugggu ggu------- ---------- 661 ---------- ccuuccgu-a ggaaaacgua c]--|----- -------|-- ---------- 721 |----ac|-- --gaa|Gccu u---|----- ---------- ---|UGCG-- ---------- 781 gccc-(gaaa --)-g-ggu- ---------g cacagu---g cgcgacuau- ---------- 841 ---aaac-ac ugauu----- -----cugug gucaa----- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 -------CGC A|--A----- -----|GCA- GC-------- ---------- ---------- 1021 --(g------ ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- guucu(gugg a--------- 1141 -----)agaa ca-------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 ---------- ---------- ---------- ---------- ---------- ---------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- ---------- -)-------- ---------- 1561 ---------- ---------- ---------- ---------- ---------- ---------- 1621 ---------- --G--CUGC| --GA|CUUU- C-U-C|AAAU |UG--C-GGG |AACA----| 1681 C-CC------ ---------- ---------- -|Ua------ ---------- ---------- 1741 ---------- ---------- ---------- ---------- --------AA GU|------C 1801 AA-------- CA-AA|C-AC C|-------- ---------- ---------- ---------- 1861 ---|GCG-G- CC-G-G---- -A-CGu(g-a aa-------- ---------- ---------- 1921 ---------- -)GCGU--CA --G-G---C- G-C|agca|G U-C-G-g-gg (uagcg---- 1981 ---------- --------)c cc-U-G--G- U|-------G GA-A|GGU-A AUA-Gc-uu- 2041 ug--u-ug-| -aau------ ------|--- ---------- ---------- ---------- 2101 ---------- ---------- ggc-a--caa u|-------- ---------- ---------- 2161 ---------- ---------- ---------- --GGG|-CAA -|UC-CGCA| GCC|-AAg-- 2221 |CCCC----- ------(--- ---------- ---------- ---------- ---------- 2281 ---------- ----)|-|u| aa----|gg- ucc------- ---------- ---------- 2341 (c-ccg-cu- ---------- ---------- ---------- ---------- ---------- 2401 -------)-- ---------- ---------- ---------- ---------- -------|-- 2461 -----gg-g- cu-|a|u|-- ---------- GGGG|--AA| GGU|--UCA| CA-GACU-G| 2521 -UAA|GGG-A --G-GG|G|G Uuucuu---- ---------- -(ccauga-- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------) ---------- 2701 -aagaaGCU- |UAA-GA-GA |CA-GUC|G| -|GU-----| c----|cccu gc-------- 2761 ----(-GAGA ---------- )--------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---------- ---------- 2881 --|------- gc--a-g-u- g|-------- --|-ucgcau g--------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- -|----ugag gaa|ggcac- ccau(--gaa 3121 aa-------- ---------- ---------- ---------- ---------- ---------- 3181 ---------- ---------- -----)gugg g-ugcu|--- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ---------- ---------- ---------- ---------- ---------- ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- --|-ggaga- g--|------ ---------- --c---caug 4021 uga|------ --------|g cccuc----- ---------- ---------- ---------( 4081 uau------- ---------- ---------- ---------- ---------- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- --------|- ---------g a-gggu|--- ---------- -----gggaa 4261 guuuuc(cga uacaauga-- ---------- ---------- )gaaacaaac ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------| -----AC|G- -||uuc-cgu agguga| // LOCUS Por.te.8.2 4557 bp RNA RNA 16-JUL-1999 DEFINITION Porphyra tenera.. ACCESSION No information KEYWORDS No information. SOURCE Porphyra tenera. ORGANISM Porphyra tenera. REFERENCE 1 (bases 1 to 3004) AUTHORS Yoshida,T. Kunimoto,M., Kaminishi,Y., Mizukami,Y., Kito,H., Murase,N. and TITLE transcribed spacer 1 in Porphyra tenera (Rhodophyta) Molecular divergence of the ssu rRNA gene and internal JOURNAL Published Only in DataBase (1999) In press STANDARD No information COMMENTS Sequence information (bases 1 to 4557) Corresponding GenBank entry: AB029882 LOCUS AB029882 3355 bp DNA PLN 16-JUL-1999 DEFINITION Porphyra tenera DNA, 18S rRNA, ITS 1, 5.8S rRNA region, strain:Kawaura-5. ACCESSION AB029882 NID g5509936 VERSION AB029882.1 GI:5509936 KEYWORDS 18S rRNA; 18S ribosomal RNA; 5.8S rRAN; partial; ssu rRNA; 5.8S ribosomal RNA. SOURCE Porphyra tenera (strain:Kawaura-5, isolate:Kawaura Kumamoto) gametophyte individual thallus DNA. ORGANISM Porphyra tenera Eukaryota; Rhodophyta; Bangiophyceae; Bangiales; Bangiaceae; Porphyra. REFERENCE 1 (bases 1 to 3355) AUTHORS Kunimoto,M., Kaminishi,Y., Mizukami,Y., Kito,H., Murase,N. and Yoshida,T. TITLE Molecular divergence of the ssu rRNA gene and internal transcribed spacer 1 in Porphyra tenera (Rhodophyta) JOURNAL Published Only in DataBase (1999) In press REFERENCE 2 (bases 1 to 3355) AUTHORS Kunimoto,M., Kaminishi,Y., Mizukami,Y., Kito,H., Murase,N. and Yoshida,T. TITLE Direct Submission JOURNAL Submitted (09-JUL-1999) to the DDBJ/EMBL/GenBank databases. Masahiko Kunimoto, National Fisheries University, Department of Food Science; Nagatahon-machi 2-7-1, Shimonoseki, Yamaguchi 759-6595, Japan (E-mail:jkunimo@fish-u.ac.jp, Tel:81-832-86-5111(ex.421), Fax:81-832-86-2292) FEATURES Location/Qualifiers source 1..3355 /organism="Porphyra tenera" /isolate="Kawaura Kumamoto" /strain="Kawaura-5" /db_xref="taxon:2785" /dev_stage="gametophyte" /tissue_type="individual thallus" primer_bind 1..22 exon 23..568 /note="putative" /product="ssu rRNA" rRNA join(23..568,903..2138,2922..2951) /product="18S rRNA" intron 569..902 /note="putative" exon 903..2138 /note="putative" /product="ssu rRNA" intron 2139..2921 /note="group I intron;putative" exon 2922..2951 /note="putative" /product="ssu rRNA" misc_RNA 2952..3309 /note="ITS 1; putative" rRNA 3310..3355 /note="putative" /product="5.8S rRNA" BASE COUNT 845 a 756 c 929 g 824 t 1 others BASE COUNT 199 a 184 c 247 g 178 t 3749 others ORIGIN 1 |gucguaaca aggU||uuc- -------(-- ---------- ---------- ---------- 61 ---------- ---------- --)|------ ---------- ----c|---- ---------( 121 -------)-- ---------| --[guauuuu -gugggugga uaccgauuca auaacauccg 181 ccguuuuucu caauguacua uaucccuagu cugcuugccu aguucuugga gucuugugcg 241 augugugcua uuacaggcau gccgggucau gaagacagac aagguuggga ucuucacgga 301 aguacgcgca auaggagcgc gucuuguuca acgcacccga cucaagaguc auaugcgagg 361 gacggacgca gcgcuugucg ccg-cacaga ugg(ga---- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------c g--------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- -cg)ccauau cggagacagg 601 gggacgugcc auugugauga ugaugaugau guuguugggu ggu------- ---------- 661 ---------- ccuuccgu-a ggaaaacgua c]--|----- -------|-- ---------- 721 |----ac|-- --gaa|Gccu u---|----- ---------- ---|UGCG-- ---------- 781 gccc-(gaaa --)-g-ggu- ---------g cacagu---g cgcgacuau- ---------- 841 ---aaac-ac ugauu----- -----cugug gucaa----- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 -------CGC A|--A----- -----|GCA- GC-------- ---------- ---------- 1021 --(g------ ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- guucu(gugg a--------- 1141 -----)agaa ca-------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 ---------- ---------- ---------- ---------- ---------- ---------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- ---------- -)-------- ---------- 1561 ---------- ---------- ---------- ---------- ---------- ---------- 1621 ---------- --G--CUGC| --GA|CUUU- C-U-C|AAAU |UG--C-GGG |AACA----| 1681 C-CC------ ---------- ---------- -|Ua------ ---------- ---------- 1741 ---------- ---------- ---------- ---------- --------AA GU|------C 1801 AA-------- CA-AA|C-AC C|-------- ---------- ---------- ---------- 1861 ---|GCG-G- CC-G-G---- -A-CGu(g-a aa-------- ---------- ---------- 1921 ---------- -)GCGU--CA --G-G---C- G-C|agca|G U-C-G-g-gg (uagcg---- 1981 ---------- --------)c cc-U-G--G- U|-------G GA-A|GGU-A AUA-Gc-uu- 2041 ug--u-ug-| -aau------ ------|--- ---------- ---------- ---------- 2101 ---------- ---------- ggc-a--caa u|-------- ---------- ---------- 2161 ---------- ---------- ---------- --GGG|-CAA -|UC-CGCA| GCC|-AAg-- 2221 |CCCC----- ------(--- ---------- ---------- ---------- ---------- 2281 ---------- ----)|-|u| aa----|gg- ucc------- ---------- ---------- 2341 (c-ccg-cu- ---------- ---------- ---------- ---------- ---------- 2401 -------)-- ---------- ---------- ---------- ---------- -------|-- 2461 -----gg-g- cu-|a|u|-- ---------- GGGG|--AA| GGU|--UCA| CA-GACU-G| 2521 -UAA|GGG-A --G-GG|G|G Uuucuu---- ---------- -(ccauga-- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------) ---------- 2701 -aagaaGCU- |UAA-GA-GA |CA-GUC|G| -|GU-----| c----|cccu gc-------- 2761 ----(-GAGA ---------- )--------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---------- ---------- 2881 --|------- gc--a-g-u- g|-------- --|-ucgcau g--------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- -|----ugag gaa|ggcac- ccau(--gaa 3121 aa-------- ---------- ---------- ---------- ---------- ---------- 3181 ---------- ---------- -----)gugg g-ugcu|--- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ---------- ---------- ---------- ---------- ---------- ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- --|-ggaga- g--|------ ---------- --c---caug 4021 uga|------ --------|g cccuc----- ---------- ---------- ---------( 4081 uau------- ---------- ---------- ---------- ---------- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- --------|- ---------g a-gggu|--- ---------- -----gggaa 4261 guuuuc(cga uacaauga-- ---------- ---------- )gaaacaaac ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------| -----AC|G- -||uuc-cgu agguga| // LOCUS Por.te.9.2 4557 bp RNA RNA 16-JUL-1999 DEFINITION Porphyra tenera.. ACCESSION No information KEYWORDS No information. SOURCE Porphyra tenera. ORGANISM Porphyra tenera. REFERENCE 1 (bases 1 to 3004) AUTHORS Yoshida,T. Kunimoto,M., Kaminishi,Y., Mizukami,Y., Kito,H., Murase,N. and TITLE transcribed spacer 1 in Porphyra tenera (Rhodophyta) Molecular divergence of the ssu rRNA gene and internal JOURNAL Published Only in DataBase (1999) In press STANDARD No information COMMENTS Sequence information (bases 1 to 4557) Corresponding GenBank entry: AB029883 LOCUS AB029883 3381 bp DNA PLN 16-JUL-1999 DEFINITION Porphyra tenera DNA, 18S rRNA, ITS 1, 5.8S rRNA region, strain:Matsukawa-3. ACCESSION AB029883 NID g5509937 VERSION AB029883.1 GI:5509937 KEYWORDS 18S rRNA; 18S ribosomal RNA; 5.8S rRNA; ssu rRNA; 5.8S ribosomal RNA. SOURCE Porphyra tenera (strain:Matsukawa-3, isolate:Matsukawa Fukushima) gametophyte individual thallus DNA. ORGANISM Porphyra tenera Eukaryota; Rhodophyta; Bangiophyceae; Bangiales; Bangiaceae; Porphyra. REFERENCE 1 (bases 1 to 3381) AUTHORS Kunimoto,M., Kaminishi,Y., Mizukami,Y., Kito,H., Murase,N. and Yoshida,T. TITLE Molecular divergence of the ssu rRNA gene and internal transcribed spacer 1 in Porphyra tenera (Rhodophyta) JOURNAL Published Only in DataBase (1999) In press REFERENCE 2 (bases 1 to 3381) AUTHORS Kunimoto,M., Kaminishi,Y., Mizukami,Y., Kito,H., Murase,N. and Yoshida,T. TITLE Direct Submission JOURNAL Submitted (09-JUL-1999) to the DDBJ/EMBL/GenBank databases. Masahiko Kunimoto, National Fisheries University, Department of Food Science; Nagatahon-machi 2-7-1, Shimonoseki, Yamaguchi 759-6595, Japan (E-mail:jkunimo@fish-u.ac.jp, Tel:81-832-86-5111(ex.421), Fax:81-832-86-2292) FEATURES Location/Qualifiers source 1..3381 /organism="Porphyra tenera" /isolate="Matsukawa Fukushima" /strain="Matsukawa-3" /db_xref="taxon:2785" /dev_stage="gametophyte" /tissue_type="individual thallus" primer_bind 1..22 exon 23..568 /note="putative" /product="ssu rRNA" rRNA join(23..568,1078..2313,2956..2985) /product="18S rRNA" intron 569..1077 /note="putative" exon 1078..2313 /note="putative" /product="ssu rRNA" intron 2314..2955 /note="group I intron;putative" exon 2956..2985 /note="putative" /product="ssu rRNA" misc_RNA 2986..3342 /note="ITS 1; putative" rRNA 3343..>3381 /note="putative" /product="5.8S rRNA" BASE COUNT 850 a 768 c 941 g 822 t BASE COUNT 163 a 149 c 204 g 151 t 3890 others ORIGIN 1 |gucguaaca aggU||uuc- -------(-- ---------- ---------- ---------- 61 ---------- ---------- --)|------ ---------- ----c|---- ---------( 121 -------)-- ---------| --[guauuuu -gugggugga uaccgauuca auaacauccg 181 ccguuuuucu caauguacua uaucccuagu cugcuugccu aguucuugga gucu------ 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ----cgugc- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---gaugug- ---------- 541 ---------u g--------- ---------- -caaagaugg acg)ccauau cggagacagg 601 gggaggugcc auugugauga u---gacgau guuguugggu ggu------- ---------- 661 ---------- ccuuccgu-a ggaagacgua c]--|----- -------|-- ---------- 721 |----ac|-- --gaa|Gccu u---|----- ---------- ---|UGCG-- ---------- 781 gccc-(gaaa --)-g-ggu- ---------g cacagu---g cgcgacuau- ---------- 841 ---aaac-ac ugauu----- -----cugug gucaa----- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 -------CGC A|--A----- -----|GCA- GC-------- ---------- ---------- 1021 --(g------ ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- guucu(gugg a--------- 1141 -----)agaa ca-------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 ---------- ---------- ---------- ---------- ---------- ---------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- ---------- -)-------- ---------- 1561 ---------- ---------- ---------- ---------- ---------- ---------- 1621 ---------- --G--CUGC| --GA|CUUU- C-U-C|AAAU |UG--C-GGG |AACA----| 1681 C-CC------ ---------- ---------- -|Ua------ ---------- ---------- 1741 ---------- ---------- ---------- ---------- --------AA GU|------C 1801 AA-------- CA-AG|C-AC C|-------- ---------- ---------- ---------- 1861 ---|GCG-G- CU-U-G---- -A-CGu(gaa aa-------- ---------- ---------- 1921 ---------- -)GCGU--CA --G-G---C- G-C|agca|G U-C-G-g-gg (uagcg---- 1981 ---------- --------)c cc-U-G--G- C|-------G GA-U|GGU-A AUA-Gc-cu- 2041 ug--u-ug-| -aau------ ------|--- ---------- ---------- ---------- 2101 ---------- ---------- ggc-a--caa u|-------- ---------- ---------- 2161 ---------- ---------- ---------- --GGG|-CAA -|UC-CGCA| GCC|-AAg-- 2221 |CCCC----- ------(--- ---------- ---------- ---------- ---------- 2281 ---------- ----)|-|u| aa----|gg- ucc------- ---------- ---------- 2341 (c-ccg-cu- ---------- ---------- ---------- ---------- ---------- 2401 -------)-- ---------- ---------- ---------- ---------- -------|-- 2461 -----gg-g- cu-|a|u|-- ---------- GGGG|--AA| GGU|--UCA| CA-GACU-G| 2521 -UAA|GGG-A --G-GG|G|G Uuucuu---- ---------- -(ccauga-- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------) ---------- 2701 -aagaaGCU- |UAA-GA-GA |CA-GUC|G| -|GU-----| c----|cccu gc-------- 2761 ----(-GAGA ---------- )--------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---------- ---------- 2881 --|------- gc--a-g-u- g|-------- --|-ucgcau g--------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- -|----ugag gaa|ggcac- ccau(--gaa 3121 aa-------- ---------- ---------- ---------- ---------- ---------- 3181 ---------- ---------- -----)gugg g-ugcu|--- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ---------- ---------- ---------- ---------- ---------- ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- --|-ggaga- g--|------ ---------- --c---caug 4021 uga|------ --------|g cccuc----- ---------- ---------- ---------( 4081 uau------- ---------- ---------- ---------- ---------- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- --------|- ---------g a-gggu|--- ---------- -----gggaa 4261 guuuuc(cga uacaauga-- ---------- ---------- )gaaacaaac ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------| -----AC|G- -||uuc-cgu agguga| // LOCUS Por.te10.2 4557 bp RNA RNA 16-JUL-1999 DEFINITION Porphyra tenera.. ACCESSION No information KEYWORDS No information. SOURCE Porphyra tenera. ORGANISM Porphyra tenera. REFERENCE 1 (bases 1 to 3004) AUTHORS Kunimoto,M., Kaminishi,Y., Mizukami,Y., Kito,H., Murase,N. and Yoshida,T. TITLE Molecular divergence of the ssu rRNA gene and internal transcribed spacer 1 in Porphyra tenera (Rhodophyta) JOURNAL Published Only in DataBase (1999) In press STANDARD No information COMMENTS Sequence information (bases 1 to 4557) Corresponding GenBank entry: AB029884 LOCUS AB029884 3381 bp DNA PLN 16-JUL-1999 DEFINITION Porphyra tenera DNA, 18S rRNA, ITS 1, 5.8S rRNA region, strain:Matsukawa-4. ACCESSION AB029884 NID g5509938 VERSION AB029884.1 GI:5509938 KEYWORDS 18S rRNA; 18S ribosomal RNA; 5.8S rRNA; ssu rRNA; 5.8S ribosomal RNA. SOURCE Porphyra tenera (strain:Matsukawa-4, isolate:Matsukawa Fukushima) gametophyte individual thallus DNA. ORGANISM Porphyra tenera Eukaryota; Rhodophyta; Bangiophyceae; Bangiales; Bangiaceae; Porphyra. REFERENCE 1 (bases 1 to 3381) AUTHORS Kunimoto,M., Kaminishi,Y., Mizukami,Y., Kito,H., Murase,N. and Yoshida,T. TITLE Molecular divergence of the ssu rRNA gene and internal transcribed spacer 1 in Porphyra tenera (Rhodophyta) JOURNAL Published Only in DataBase (1999) In press REFERENCE 2 (bases 1 to 3381) AUTHORS Kunimoto,M., Kaminishi,Y., Mizukami,Y., Kito,H., Murase,N. and Yoshida,T. TITLE Direct Submission JOURNAL Submitted (09-JUL-1999) to the DDBJ/EMBL/GenBank databases. Masahiko Kunimoto, National Fisheries University, Department of Food Science; Nagatahon-machi 2-7-1, Shimonoseki, Yamaguchi 759-6595, Japan (E-mail:jkunimo@fish-u.ac.jp, Tel:81-832-86-5111(ex.421), Fax:81-832-86-2292) FEATURES Location/Qualifiers source 1..3381 /organism="Porphyra tenera" /isolate="Matsukawa Fukushima" /strain="Matsukawa-4" /db_xref="taxon:2785" /dev_stage="gametophyte" /tissue_type="individual thallus" primer_bind 1..22 exon 23..568 /note="putative" /product="ssu rRNA" rRNA join(23..568,1078..2313,2956..2985) /product="18S rRNA" intron 569..1077 /note="putative" exon 1078..2313 /note="putative" /product="ssu rRNA" intron 2314..2955 /note="group I intron;putative" exon 2956..2985 /note="putative" /product="ssu rRNA" misc_RNA 2986..3342 /note="ITS 1; putative" rRNA 3343..>3381 /note="putative" /product="5.8S rRNA" BASE COUNT 850 a 768 c 941 g 822 t BASE COUNT 163 a 149 c 204 g 151 t 3890 others ORIGIN 1 |gucguaaca aggU||uuc- -------(-- ---------- ---------- ---------- 61 ---------- ---------- --)|------ ---------- ----c|---- ---------( 121 -------)-- ---------| --[guauuuu -gugggugga uaccgauuca auaacauccg 181 ccguuuuucu caauguacua uaucccuagu cugcuugccu aguucuugga gucu------ 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ----cgugc- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---gaugug- ---------- 541 ---------u g--------- ---------- -caaagaugg acg)ccauau cggagacagg 601 gggaggugcc auugugauga u---gacgau guuguugggu ggu------- ---------- 661 ---------- ccuuccgu-a ggaagacgua c]--|----- -------|-- ---------- 721 |----ac|-- --gaa|Gccu u---|----- ---------- ---|UGCG-- ---------- 781 gccc-(gaaa --)-g-ggu- ---------g cacagu---g cgcgacuau- ---------- 841 ---aaac-ac ugauu----- -----cugug gucaa----- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 -------CGC A|--A----- -----|GCA- GC-------- ---------- ---------- 1021 --(g------ ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- guucu(gugg a--------- 1141 -----)agaa ca-------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 ---------- ---------- ---------- ---------- ---------- ---------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- ---------- -)-------- ---------- 1561 ---------- ---------- ---------- ---------- ---------- ---------- 1621 ---------- --G--CUGC| --GA|CUUU- C-U-C|AAAU |UG--C-GGG |AACA----| 1681 C-CC------ ---------- ---------- -|Ua------ ---------- ---------- 1741 ---------- ---------- ---------- ---------- --------AA GU|------C 1801 AA-------- CA-AG|C-AC C|-------- ---------- ---------- ---------- 1861 ---|GCG-G- CU-U-G---- -A-CGu(gaa aa-------- ---------- ---------- 1921 ---------- -)GCGU--CA --G-G---C- G-C|agca|G U-C-G-g-gg (uagcg---- 1981 ---------- --------)c cc-U-G--G- C|-------G GA-U|GGU-A AUA-Gc-cu- 2041 ug--u-ug-| -aau------ ------|--- ---------- ---------- ---------- 2101 ---------- ---------- ggc-a--caa u|-------- ---------- ---------- 2161 ---------- ---------- ---------- --GGG|-CAA -|UC-CGCA| GCC|-AAg-- 2221 |CCCC----- ------(--- ---------- ---------- ---------- ---------- 2281 ---------- ----)|-|u| aa----|gg- ucc------- ---------- ---------- 2341 (c-ccg-cu- ---------- ---------- ---------- ---------- ---------- 2401 -------)-- ---------- ---------- ---------- ---------- -------|-- 2461 -----gg-g- cu-|a|u|-- ---------- GGGG|--AA| GGU|--UCA| CA-GACU-G| 2521 -UAA|GGG-A --G-GG|G|G Uuucuu---- ---------- -(ccauga-- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------) ---------- 2701 -aagaaGCU- |UAA-GA-GA |CA-GUC|G| -|GU-----| c----|cccu gc-------- 2761 ----(-GAGA ---------- )--------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---------- ---------- 2881 --|------- gc--a-g-u- g|-------- --|-ucgcau g--------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- -|----ugag gaa|ggcac- ccau(--gaa 3121 aa-------- ---------- ---------- ---------- ---------- ---------- 3181 ---------- ---------- -----)gugg g-ugcu|--- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ---------- ---------- ---------- ---------- ---------- ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- --|-ggaga- g--|------ ---------- --c---caug 4021 uga|------ --------|g cccuc----- ---------- ---------- ---------( 4081 uau------- ---------- ---------- ---------- ---------- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- --------|- ---------g a-gggu|--- ---------- -----gggaa 4261 guuuuc(cga uacaauga-- ---------- ---------- )gaaacaaac ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------| -----AC|G- -||uuc-cgu agguga| // LOCUS Por.te11.2 4557 bp RNA RNA 17-JUL-1999 DEFINITION Porphyra tenera.. ACCESSION No information KEYWORDS No information. SOURCE Porphyra tenera. ORGANISM Porphyra tenera. REFERENCE 1 (bases 1 to 3004) AUTHORS Kunimoto,M., Kaminishi,Y., Mizukami,Y., Kito,H., Murase,N. and Yashida,T. TITLE Molecular divergence of the ssu rRNA gene and internal transcribed spacer 1 in Porphyra tenera (Rhodophyta) JOURNAL Published Only in DataBase (1999) In press STANDARD No information COMMENTS Sequence information (bases 1 to 4557) Corresponding GenBank entry: AB029881 LOCUS AB029881 3994 bp DNA PLN 17-JUL-1999 DEFINITION Porphyra tenera DNA, 18S rRNA, ITS 1, 5.8S rRNA region, strain:Kawaura-4. ACCESSION AB029881 NID g5525093 VERSION AB029881.1 GI:5525093 KEYWORDS 18S rRNA; 18S ribosomal RNA; 5.8S rRNA; partial; ssu rRNA; 5.8S ribosomal RNA. SOURCE Porphyra tenera (strain:Kawaura-4, isolate:Shinwa Kumamoto) gametophyte individual thallus DNA. ORGANISM Porphyra tenera Eukaryota; Rhodophyta; Bangiophyceae; Bangiales; Bangiaceae; Porphyra. REFERENCE 1 (bases 1 to 3994) AUTHORS Kunimoto,M., Kaminishi,Y., Mizukami,Y., Kito,H., Murase,N. and Yashida,T. TITLE Molecular divergence of the ssu rRNA gene and internal transcrib ed spacer 1 in Porphyra tenera (Rhodophyta) JOURNAL Published Only in DataBase (1999) In press REFERENCE 2 (bases 1 to 3994) AUTHORS Kunimoto,M., Kaminishi,Y., Mizukami,Y., Kito,H., Murase,N. and Yashida,T. TITLE Direct Submission JOURNAL Submitted (09-JUL-1999) to the DDBJ/EMBL/GenBank databases. Masahiko Kunimoto, National Fisheries University, Department of Food Science; Nagatahon-machi 2-7-1, Shimonoseki, Yamaguchi 759-6595, Japan (E-mail:jkunimo@fish-u.ac.jp, Tel:81-832-86-5111(ex.421), Fax:81-832-86-2292) FEATURES Location/Qualifiers source 1..3994 /organism="Porphyra tenera" /isolate="Shinwa Kumamoto" /strain="Kawaura-4" /db_xref="taxon:2785" /dev_stage="gametophyte" /tissue_type="individual thallus" primer_bind 1..22 /note="PCR primer" exon 23..568 /note="putative" /product="ssu rRNA" rRNA join(23..568,1541..2776,3560..3589) /product="18S rRNA" intron 569..1540 /note="putative" exon 1541..2776 /note="putative" /product="ssu rRNA" intron 2777..3559 /note="group I intron;putative" exon 3560..3589 /note="putative" /product="ssu rRNA" misc_RNA 3590..3948 /note="ITS 1; putative" rRNA 3949..>3994 /note="putative" /product="5.8S rRNA" BASE COUNT 1007 a 915 c 1107 g 965 t BASE COUNT 199 a 184 c 247 g 178 t 3749 others ORIGIN 1 |gucguaaca aggU||uuc- -------(-- ---------- ---------- ---------- 61 ---------- ---------- --)|------ ---------- ----c|---- ---------( 121 -------)-- ---------| --[guauuuu -gugggugga uaccgauuca auaacauccg 181 ccguuuuucu caauguacua uaucccuagu cugcuugccu aguucuugga gucu------ 241 ------ugug cgaugugugc uauuacaggc augccggguc augaagacag acaagguugg 301 gaucuucacg gaaguacgcg caauaggagc gcgucuuguu caacgcaccc gacucaagag 361 ucaua----- ------ugc- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---ga----- ----gggacg 541 gacgcagcgc uugucgccgc acagauggga cg-------- -cg)ccauau cggagacagg 601 gggacgugcc auugugauga ugaugaugau guuguugggu ggu------- ---------- 661 ---------- ccuuccgu-a ggaaaacgua c]--|----- -------|-- ---------- 721 |----ac|-- --gaa|Gccu u---|----- ---------- ---|UGCG-- ---------- 781 gccc-(gaaa --)-g-ggu- ---------g cacagu---g cgcgacuau- ---------- 841 ---aaac-ac ugauu----- -----cugug gucaa----- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 -------CGC A|--A----- -----|GCA- GC-------- ---------- ---------- 1021 --(g------ ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- guucu(gugg a--------- 1141 -----)agaa ca-------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 ---------- ---------- ---------- ---------- ---------- ---------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- ---------- -)-------- ---------- 1561 ---------- ---------- ---------- ---------- ---------- ---------- 1621 ---------- --G--CUGC| --GA|CUUU- C-U-C|AAAU |UG--C-GGG |AACA----| 1681 C-CC------ ---------- ---------- -|Ua------ ---------- ---------- 1741 ---------- ---------- ---------- ---------- --------AA GU|------C 1801 AA-------- CA-AA|C-AC C|-------- ---------- ---------- ---------- 1861 ---|GCG-G- CC-G-G---- -A-CGu(gaa a--------- ---------- ---------- 1921 ---------- -)GCGU--CA --G-G---C- G-C|agca|G U-C-G-g-gg (uagcg---- 1981 ---------- --------)c cc-U-G--G- U|-------G GA-A|GGU-A AUA-Gc-uu- 2041 ug--u-ug-| -aau------ ------|--- ---------- ---------- ---------- 2101 ---------- ---------- ggc-a--caa u|-------- ---------- ---------- 2161 ---------- ---------- ---------- --GGG|-CAA -|UC-CGCA| GCC|-AAg-- 2221 |CCCC----- ------(--- ---------- ---------- ---------- ---------- 2281 ---------- ----)|-|u| aa----|gg- ucc------- ---------- ---------- 2341 (c-ccg-cu- ---------- ---------- ---------- ---------- ---------- 2401 -------)-- ---------- ---------- ---------- ---------- -------|-- 2461 -----gg-g- cu-|a|u|-- ---------- GGGG|--AA| GGU|--UCA| CA-GACU-G| 2521 -UAA|GGG-A --G-GG|G|G Uuucuu---- ---------- -(ccauga-- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------) ---------- 2701 -aagaaGCU- |UAA-GA-GA |CA-GUC|G| -|GU-----| c----|cccu gc-------- 2761 ----(-GAGA ---------- )--------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---------- ---------- 2881 --|------- gc--a-g-u- g|-------- --|-ucgcau g--------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- -|----ugag gaa|ggcac- ccau(--gaa 3121 aa-------- ---------- ---------- ---------- ---------- ---------- 3181 ---------- ---------- -----)gugg g-ugcu|--- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ---------- ---------- ---------- ---------- ---------- ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- --|-ggaga- g--|------ ---------- --c---caug 4021 uga|------ --------|g cccuc----- ---------- ---------- ---------( 4081 uau------- ---------- ---------- ---------- ---------- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- --------|- ---------g a-gggu|--- ---------- -----gggaa 4261 guuuuc(cga uacaauga-- ---------- ---------- )gaaacaaac ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------| -----AC|G- -||uuc-cgu agguga| // LOCUS Por.sp.3.1 4557 bp RNA RNA 08-SEP-1998 DEFINITION Porphyra sp. subsp. Porphyra sp. Shinori Hakodate Hokkaido. ACCESSION No information KEYWORDS No information. SOURCE Porphyra sp. subsp. Porphyra sp. Shinori Hakodate Hokkaido. ORGANISM Porphyra sp. REFERENCE 1 (bases 1 to 3004) AUTHORS Kunimoto,M., Yamamoto,Y., Kito,H., Kaminishi,Y. and Mizukami,Y . TITLE internal transcribed spacer 1 in Porphyra yezoensis (Rhodophyta) A molecular divergence of ssu rRNA gene and ribosomal JOURNAL Unpublished (1998) STANDARD No information COMMENTS Sequence information (bases 1 to 4557) Corresponding GenBank entry: AB017077 LOCUS AB017077 1631 bp DNA PLN 08-SEP-1998 DEFINITION Porphyra sp. DNA, internal transcribed spacer 1 (ITS1). ACCESSION AB017077 NID g3510353 KEYWORDS ssu rRNA; ITS1; 5.8S rRNA. SOURCE Porphyra sp. gametophyte individual thallus DNA. ORGANISM Porphyra sp. Eukaryota; Rhodophyta; Bangiophyceae; Bangiales; Bangiaceae; Porphyra. REFERENCE 1 (sites) AUTHORS Kunimoto,M., Yamamoto,Y., Kito,H., Kaminishi,Y. and Mizukami,Y. TITLE A molecular divergence of ssu rRNA gene and ribosomal internal transcribed spacer 1 in Porphyra yezoensis (Rhodophyta) JOURNAL Unpublished (1998) REFERENCE 2 (bases 1 to 1631) AUTHORS Kunimoto,M., Yamamoto,Y., Kito,H., Kaminishi,Y. and Mizukami,Y. TITLE Direct Submission JOURNAL Submitted (21-AUG-1998) to the DDBJ/EMBL/GenBank databases. Masahiko Kunimoto, National Fisheries University, Department of Food Science; Nagatahon-machi 2-7-1, Shimonoseki, Yamaguchi 759-6595, Japan (E-mail:jkunimo@fish-u.ac.jp, Tel:0832-86-5111(ex.421), Fax:0832-86-2292) FEATURES Location/Qualifiers source 1..1631 /organism="Porphyra sp." /note="collection_site: Shinori Hakodate Hokkaido" /db_xref="taxon:2790" /dev_stage="gametophyte" /tissue_type="individual thallus" rRNA join(<1..218,1186..1215) /note="putative" /product="small subunit ribosomal RNA" intron 219..1185 /note="group I intron; putative" misc_feature 1216..1575 /note="ITS1; putative" rRNA 1576..>1631 /note="putative" /product="5.8S ribosomal RNA" BASE COUNT 400 a 404 c 440 g 387 t BASE COUNT 241 a 235 c 295 g 221 t 3565 others ORIGIN 1 |gucguaaca aggU||uuc- -------(-- ---------- ---------- ---------- 61 ---------- ---------- --)|------ ---------- ----c|---- ---------( 121 -------)-- ---------| --[guauuuu -gugggugga uaccgauuca auaacauccg 181 ccauuuuucu caauguacua uaucccuagu cugcuugccu aguucuugga gucucgugcg 241 augugugcca ucaaaggcac gccgggucau gaagacagac aagguuagga ucuucacgga 301 aguacgcgca auaggagcgc gucuuguuca acgcaccuga cucaagaguc auaugcgagg 361 gacggacgca gcgcuugucg ccg-cacaga ugg(gaagcu uccucuccag gcauaggaug 421 gcgcugcauu ugcaucaccg cu-gcua--g uaaguggcaa uaauacuuga c-cccccgcc 481 agcgcacuug uacauagccg uuggcggcgg ggacguaguu ggugauguga cagccucgag 541 cguucaccuc cguguguccg cccaaucugc acaaagaugg acg)ccauau cggagacagg 601 gggaggugcc auugugauga ugaugaugau guuguugggu ggu------- ---------- 661 ---------- ccuuccgu-a ggaaaacgua c]--|----- -------|-- ---------- 721 |----ac|-- --gaa|Gccu u---|----- ---------- ---|UGCG-- ---------- 781 gccc-(gaaa --)-g-ggu- ---------g cacagu---g cgcgacuau- ---------- 841 ---aaac-ac ugauu----- -----cugug gucaa----- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 -------CGC A|--A----- -----|GCA- GC-------- ---------- ---------- 1021 --(g------ ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- guucu(gugg a--------- 1141 -----)agaa ca-------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 ---------- ---------- ---------- ---------- ---------- ---------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- ---------- -)-------- ---------- 1561 ---------- ---------- ---------- ---------- ---------- ---------- 1621 ---------- --G--CUGC| --GA|CUUU- C-U-C|AAAU |UG--C-GGG |AACA----| 1681 C-CC------ ---------- ---------- -|Ua------ ---------- ---------- 1741 ---------- ---------- ---------- ---------- --------AA GU|------C 1801 AA-------- CA-AA|C-AC C|-------- ---------- ---------- ---------- 1861 ---|GCG-G- CC-G-G---- -A-CGu(gaa a--------- ---------- ---------- 1921 ---------- -)GCGU--CA --G-G---C- G-C|agca|G U-C-G-g-gg (uagcg---- 1981 ---------- --------)c cc-U-G--G- C|-------G GA-A|GGU-A AUA-Gc-uu- 2041 ug--u-ug-| -aau------ ------|--- ---------- ---------- ---------- 2101 ---------- ---------- ggc-a--caa u|-------- ---------- ---------- 2161 ---------- ---------- ---------- --GGG|-CAA -|UC-CGCA| GCC|-AAg-- 2221 |CCCC----- ------(--- ---------- ---------- ---------- ---------- 2281 ---------- ----)|-|u| a-----|agg ucc------- ---------- ---------- 2341 (u-uuu-ugc ---------- ---------- ---------- ---------- ---------- 2401 -------)-- ---------- ---------- ---------- ---------- -------|-- 2461 -----gg-gu cu-|a|u|-- ---------- GGGG|--AA| GGU|--UCA| CA-GACU-G| 2521 -UAA|GGG-A --G-GG|G|G UUucuu---- ---------- -(ccaua--- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------) ---------- 2701 -aagaaGCU- |UAA-GA-GA |CA-GUC|G| -|GU-----| c----|cccu gc-------- 2761 ----(-GAAA ---------- )--------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---------- ---------- 2881 --|------- gc--a-g-u- g|-------- --|-ucucau g--------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- -|----ugag gaa|ggcgc- ccau(--gaa 3121 aa-------- ---------- ---------- ---------- ---------- ---------- 3181 ---------- ---------- -----)gugg g-cgcu|--- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ---------- ---------- ---------- ---------- ---------- ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- --|-ggaga- g--|------ ---------- --c---caug 4021 gga|------ --------|g cccuc----- ---------- ---------- ---------( 4081 uau------- ---------- ---------- ---------- ---------- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- --------|- ---------g a-gggu|--- ---------- -----gggga 4261 guuuuc(cua gauaauaaug a--------- ---------- )gaaacaaaa c--------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------| -----AC|G- -||uuc-cgu agguga| // LOCUS Por.d.1.2 4557 bp RNA RNA 09-JUL-1998 DEFINITION Porphyra dentata. subsp. Porphyra dentata isolate Koga Fukuoka.. ACCESSION No information KEYWORDS No information. SOURCE Porphyra dentata. subsp. Porphyra dentata isolate Koga Fukuoka. ORGANISM Porphyra dentata. REFERENCE 1 (bases 1 to 3004) AUTHORS Kunimoto,M., Yamamoto,Y., Kaminishi,Y., Mizukami,Y. and Kito,H . TITLE A discrimination of Porphyra species (Rhodophyta) based on the sequences of small subunit ribosomal RNA gene JOURNAL Published Only in DataBase (1998) In press STANDARD No information COMMENTS Sequence information (bases 1 to 4557) Corresponding GenBank entry: AB013183 LOCUS AB013183 3037 bp DNA PLN 09-JUL-1998 DEFINITION Porphyra dentata gene for small subunit rRNA, isolate Koga Fukuoka. ACCESSION AB013183 NID g3298494 KEYWORDS small subunit ribosomal RNA; SSU rRNA. SOURCE Porphyra dentata gametophyte thallus DNA. ORGANISM Porphyra dentata Eukaryota; Rhodophyta; Bangiophyceae; Bangiales; Bangiaceae; Porphyra. REFERENCE 1 (bases 1 to 3037) AUTHORS Kunimoto,M., Yamamoto,Y., Kaminishi,Y., Mizukami,Y. and Kito,H. TITLE A discrimination of Porphyra species (Rhodophyta) based on the sequences of small subunit ribosomal RNA gene JOURNAL Published Only in DataBase (1998) In press REFERENCE 2 (bases 1 to 3037) AUTHORS Kunimoto,M., Yamamoto,Y., Kaminishi,Y., Mizukami,Y. and Kito,H. TITLE Direct Submission JOURNAL Submitted (21-APR-1998) to the DDBJ/EMBL/GenBank databases. Masahiko Kunimoto, National Fisheries University, Food Science; Nagatahon-machi 2-7-1, Shimonoseki, Yamaguchi 759-6595, Japan (E-mail:jkunimo@fish-u.ac.jp, Tel:0832-86-5111, Fax:0832-86-2292) FEATURES Location/Qualifiers source 1..3037 /organism="Porphyra dentata" /note="collection_site: Koga Fukuoka" /db_xref="taxon:76160" /dev_stage="gametophyte" /tissue_type="thallus" primer_bind 1..22 /note="PCR primer" precursor_RNA <1..>3037 /note="precursor of small subunit ribosomal RNA (SSU rRNA)" exon 23..568 /note="putative" /product="SSU rRNA" intron 569..1198 /note="putative" exon 1199..2435 /note="putative" /product="SSU rRNA" intron 2436..3007 /note="group I intron; putative" exon 3008..3037 /note="putative" /product="SSU rRNA" BASE COUNT 772 a 674 c 851 g 740 t BASE COUNT 157 a 131 c 173 g 136 t 3960 others ORIGIN 1 |gucguaaca aggU||uuc- -------(-- ---------- ---------- ---------- 61 ---------- ---------- --)|------ ---------- ----c|---- ---------( 121 -------)-- ---------| --[guaguag -auggauggg c--------- --uuuau--- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- ---------- 661 ---------- ccuuccguag gggaaacgua c]--|----- -------|-- ---------- 721 |----au|-- --gaa|Gccu u---|----- ---------- ---|UGCA-- ---------- 781 gccc-(gaaa --)-g-ggu- ---------g cacagu---c cgcgacuau- ---------- 841 ---aaau-ac ugagc----- -----cugug gucaa----- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 -------UGC A|--A----- -----|GCA- GC-------- ---------- ---------- 1021 --(g------ ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- -gcgccccuu uuuau(uuua uu-------- 1141 -----)auua uuguggacgc a--------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 ---------- ---------- ---------- ---------- ---------- ---------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- ---------- -)-------- ---------- 1561 ---------- ---------- ---------- ---------- ---------- ---------- 1621 ---------- --G--CUGC| --GA|CUUU- C-U-C|AAAU |UG--C-GGG |AACA----| 1681 C-CC------ ---------- ---------- -|Ua------ ---------- ---------- 1741 ---------- ---------- ---------- ---------- --------AA GU|------C 1801 AG-------- CA-GA|U-AC C|-------- ---------- ---------- ---------- 1861 ---|GCG-G- UC-C-G---- -A-CGc(gaa a--------- ---------- ---------- 1921 ---------- -)-CGU--CG --G-G---C- GUC|agca|G U-U-G-g-gg (uagcg---- 1981 ---------- --------)c cc-U-G--A- U|-------G GA-U|GGU-A AUA-Ac-uc- 2041 ug--u-ug-| -aau------ ------|-a- ----acaugc gu-ucccgcc au(uuuuuu- 2101 ---)auggcg ggg--ugu-- ggcgcgaaga u|-------- ---------- ---------- 2161 ---------- ---------- ---------- --GGG|-CAA -|UC-CGCA| GCC|-AAg-- 2221 |CUCC----- ------(--- ---------- ---------- ---------- ---------- 2281 ---------- ----)|-|c| gcca--|agu c--------- ---------- ---------- 2341 (a-uau-c-- ---------- ---------- ---------- ---------- ---------- 2401 -------)-- ---------- ---------- ---------- ---------- -------|-- 2461 --------ga cu-|g|g|-- ---------- GGAG|--AA| GGU|--UCA| CA-GACU-G| 2521 UUAA|GGA-A --A-GG|G|- uccgu----- ---------- -(auaugucu uuuucucgcg 2581 gggaaaaaaa aaaa------ ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------) ---------- 2701 --acggGCU- |UAA-GA-GA |CA-GUC|G| -|UC-----| c----|cccu gc-------- 2761 ----(-GAAA ---------- )--------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---------- ---------- 2881 --|------- gc--a-g-a- g|-------- --|-ucccau g--------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- -|----ugag gaa|ggcgc- uu--(--gga 3121 aaua------ ---------- ---------- ---------- ---------- ---------- 3181 ---------- ---------- -----)--aa g-ugcu|--- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ---------- ---------- ---------- ---------- ---------- ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- --|-ggaga- g--|------ ---------- --c---caug 4021 gga|------ --------|g cccuc----- ---------- ---------- ---------( 4081 ucg------- ---------- ---------- ---------- ---------- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- --------|- ---------g a-gggu|--- ---------- ----ggguag 4261 uuuuuc(caa agac------ ---------- ---------- )gaaaaaaaa aaa------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------| -----AC|G- -||uuc-cgu agguga| // LOCUS Por.sp.2.2 4557 bp RNA RNA 09-JUL-1998 DEFINITION Porphyra sp. subsp. Porphyra sp. isolate Shimonoseki Yamaguchi.. ACCESSION No information KEYWORDS No information. SOURCE Porphyra sp. subsp. Porphyra sp. isolate Shimonoseki Yamaguchi. ORGANISM Porphyra sp. REFERENCE 1 (bases 1 to 3004) AUTHORS Kunimoto,M., Yamamoto,Y., Kaminishi,Y., Mizukami,Y. and Kito,H . TITLE A discrimination of Porphyra species (Rhodophyta) based on the sequences of small subunit ribosomal RNA gene JOURNAL Published Only in DataBase (1998) In press STANDARD No information COMMENTS Sequence information (bases 1 to 4557) Corresponding GenBank entry: AB013182 LOCUS AB013182 3048 bp DNA PLN 09-JUL-1998 DEFINITION Porphyra sp. gene for small subunit rRNA, isolate Shimonoseki Yamaguchi. ACCESSION AB013182 NID g3298493 KEYWORDS small subunit ribosomal RNA; SSU rRNA. SOURCE Porphyra sp. gametophyte thallus DNA. ORGANISM Porphyra sp. Eukaryota; Rhodophyta; Bangiophyceae; Bangiales; Bangiaceae; Porphyra. REFERENCE 1 (bases 1 to 3048) AUTHORS Kunimoto,M., Yamamoto,Y., Kaminishi,Y., Mizukami,Y. and Kito,H. TITLE A discrimination of Porphyra species (Rhodophyta) based on the sequences of small subunit ribosomal RNA gene JOURNAL Published Only in DataBase (1998) In press REFERENCE 2 (bases 1 to 3048) AUTHORS Kunimoto,M., Yamamoto,Y., Kaminishi,Y., Mizukami,Y. and Kito,H. TITLE Direct Submission JOURNAL Submitted (21-APR-1998) to the DDBJ/EMBL/GenBank databases. Masahiko Kunimoto, National Fisheries University, Food Science; Nagatahon-machi 2-7-1, Shimonoseki, Yamaguchi 759-6595, Japan (E-mail:jkunimo@fish-u.ac.jp, Tel:0832-86-5111, Fax:0832-86-2292) FEATURES Location/Qualifiers source 1..3048 /organism="Porphyra sp." /note="collection_site: Shimonoseki Yamaguchi" /db_xref="taxon:2790" /dev_stage="gametophyte" /tissue_type="thallus" primer_bind 1..22 /note="PCR primer" precursor_RNA <1..>3048 /note="precursor of small subunit ribosomal RNA (SSU rRNA)" exon 23..569 /note="putative" /product="SSU rRNA" intron 570..1128 /note="putative" exon 1129..2364 /note="putative" /product="SSU rRNA" intron 2365..3018 /note="group I intron; putative" exon 3019..3048 /note="putative" /product="SSU rRNA" BASE COUNT 780 a 678 c 859 g 731 t BASE COUNT 171 a 155 c 204 g 149 t 3878 others ORIGIN 1 |gucguaaca aggU||uuc- -------(-- ---------- ---------- ---------- 61 ---------- ---------- --)|------ ---------- ----c|---- ---------( 121 -------)-- ---------| --[guauuau uguggauugc cucaaggaag gaaggggaga 181 uguucuucgg aggguu(cau ggaaaccuuc uu)gguucuc uggagggaac cgacaaccgg 241 gaacacaauc cuaacuuuuu ugaggu---- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- ---------- 661 ---------- ccuuccgu-g ggaagacgua c]--|----- -------|-- ---------- 721 |----ac|-- --gaa|Gccu u---|----- ---------- ---|UGCG-- ---------- 781 gccc-(gaaa --)-g-ggu- ---------g cacaga---c cgcgacuau- ---------- 841 ---aaacuac ugauu----- -----cugug guaaa----- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 -------CGC A|--A----- -----|GCA- GC-------- ---------- ---------- 1021 --(g------ ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- --gugggugg gugcucucgc uucuu(augg gc-------- 1141 -----)ggga agacaaaacg caca------ ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 ---------- ---------- ---------- ---------- ---------- ---------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- ---------- -)-------- ---------- 1561 ---------- ---------- ---------- ---------- ---------- ---------- 1621 ---------- --G--CUGC| --UA|CUUU- C-U-C|AAAU |UG--C-GGG |AACA----| 1681 C-CC------ ---------- ---------- -|Ua------ ---------- ---------- 1741 ---------- ---------- ---------- ---------- --------AA GU|------C 1801 AA-------- CA-GA|U-AC C|-------- ---------- ---------- ---------- 1861 ---|GCG-G- CU-C-G---- -A-CGc(gaa a--------- ---------- ---------- 1921 ---------- -)-CGU--CG --G-G---U- GCC|agca|G U-G-A-g-gg (uagcg---- 1981 ---------- --------)c cc-U-C--A- U|-------G GA-U|GGU-A ACA-Ac-uc- 2041 ug--u-ug-| -aau------ ------|--- ---------a gagc--ggca cu(uucuuu- 2101 ---)gguggc gc-------- -----gaaca u|-------- ---------- ---------- 2161 ---------- ---------- ---------- --GGG|-CAA -|UC-CGCA| GCC|-AAg-- 2221 |CUCC----- ------(--- ---------- ---------- ---------- ---------- 2281 ---------- ----)|-|c| ggca--|agu cg-------- ---------- ---------- 2341 (u-cuu-guu ---------- ---------- ---------- ---------- ---------- 2401 -------)-- ---------- ---------- ---------- ---------- -------|-- 2461 ------c-ga cu-|g|-|-- ---------- GGAG|--AA| GGU|--UCA| CA-GACU-G| 2521 -UAA|GGG-A --A-GG|G|G Ucu------- ---------- -(uuuuuucu ugcgagaaac 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------) ---------- 2701 ----agGCU- |UAA-GA-GA |CA-GUC|G| -|GU-----| c----|cccu gc-------- 2761 ----(-GAAA ---------- )--------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---------- ---------- 2881 --|------- gc--a-g-a- g|-------- --|-ucucau g--------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- -|----agag gaa|ggcgc- uc--(--cua 3121 aaua------ ---------- ---------- ---------- ---------- ---------- 3181 ---------- ---------- -----)--ga g-ugcc|--- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ---------- ---------- ---------- ---------- ---------- ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- --|-ggaga- g--|------ ---------- --c---caug 4021 aga|------ --------|g cccag----- ---------- ---------- ---------( 4081 ucgccu---- ---------- ---------- ---------- ---------- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- --------|- ---------c u-gggu|--- ---------- -----gggga 4261 guuuuc(cua gac------- ---------- ---------- )gaaaaacga aaua------ 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------| -----AC|G- -||uuc-cgu agguga| // LOCUS Por.sp.5.2 4557 bp RNA RNA 25-JUL-1999 DEFINITION Porphyra sp. str. BRU107. ACCESSION No information KEYWORDS No information. SOURCE Porphyra sp. str. BRU107. ORGANISM Porphyra sp. REFERENCE 1 (bases 1 to 3004) AUTHORS .A. TITLE sequencing JOURNAL J. Appl. Phycol. (1999) In press STANDARD No information COMMENTS Sequence information (bases 1 to 4557) Corresponding GenBank entry: AF136419 LOCUS PSBRU107G1 744 bp DNA PLN 25-JUL-1999 DEFINITION Porphyra sp. strain BRU107 18S ribosomal RNA gene, 5' sequence. ACCESSION AF136418 NID g5579316 VERSION AF136418.1 GI:5579316 KEYWORDS . SOURCE Porphyra sp. ORGANISM Porphyra sp. Eukaryota; Rhodophyta; Bangiophyceae; Bangiales; Bangiaceae; Porphyra. REFERENCE 1 (bases 1 to 744) AUTHORS Broom,J.E., Jones,W.A., Hill,D.F., Knight,G.A. and Nelson,W.A. TITLE Species recognition in New Zealand Porphyra using 18S rDNA sequencing JOURNAL J. Appl. Phycol. (1999) In press REFERENCE 2 (bases 1 to 744) AUTHORS Broom,J.E., Jones,W.A., Hill,D.F., Knight,G.A. and Nelson,W.A. TITLE Direct Submission JOURNAL Submitted (19-MAR-1999) Department of Biochemistry, University of Otago, PO Box 56, Dunedin, New Zealand FEATURES Location/Qualifiers source 1..744 /organism="Porphyra sp." /strain="BRU107" /db_xref="taxon:2790" /dev_stage="gametophyte" /country="New Zealand: Bruce's Rock, Otago, 45 59S, 170 17E" rRNA join(<1..575,AF136419.1:469..>1712) /product="18S ribosomal RNA" intron 576..>744 /note="putative group I" BASE COUNT 200 a 150 c 191 g 192 t 11 others -------------------------------------------------------------------------- LOCUS PSBRU107G2 2269 bp DNA PLN 25-JUL-1999 DEFINITION Porphyra sp. strain BRU107 18S ribosomal RNA gene, 3' sequence. ACCESSION AF136419 NID g5579317 VERSION AF136419.1 GI:5579317 KEYWORDS . SOURCE Porphyra sp. ORGANISM Porphyra sp. Eukaryota; Rhodophyta; Bangiophyceae; Bangiales; Bangiaceae; Porphyra. REFERENCE 1 (bases 1 to 2269) AUTHORS Broom,J.E., Jones,W.A., Hill,D.F., Knight,G.A. and Nelson,W.A. TITLE Species recognition in New Zealand Porphyra using 18S rDNA sequencing JOURNAL J. Appl. Phycol. (1999) In press REFERENCE 2 (bases 1 to 2269) AUTHORS Broom,J.E., Jones,W.A., Hill,D.F., Knight,G.A. and Nelson,W.A. TITLE Direct Submission JOURNAL Submitted (19-MAR-1999) Department of Biochemistry, University of Otago, PO Box 56, Dunedin, New Zealand FEATURES Location/Qualifiers source 1..2269 /organism="Porphyra sp." /strain="BRU107" /db_xref="taxon:2790" /dev_stage="gametophyte" /country="New Zealand: Bruce's Rock, Otago, 45 59S, 170 17E" intron <1..468 /note="putative group I" intron 1713..>2269 /note="putative group I" rRNA join(AF136418.1:<1..575,469..>1712) /product="18S ribosomal RNA" BASE COUNT 547 a 513 c 660 g 536 t 13 others BASE COUNT 155 a 143 c 166 g 110 t 3983 others ORIGIN 1 |gucguaaca aggu||uuc- -------(-- ---------- ---------- ---------- 61 ---------- ---------- --)|------ ---------- ----c|---- ---------( 121 -------)-- ---------| --[guauuuu -guggau-gc ---------- -cuagcgccc 181 cucuauuuuc auacaauaga accgcuagac cuuccguggg aagacgua-- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- ---------- 661 ---------- ---------- ---------- c]--|----- -------|-- ---------- 721 |----ac|-- --gaa|Gccu u---|----- ---------- ---|UGCG-- ---------- 781 gccu-(gaaa --)-a-ggu- ---------g cacagc---g cgcgacaau- ---------- 841 ---aaacuau ugacg----- -----cugug guaaa----- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 -------CGC A|--A----- -----|GCA- GC-------- ---------- ---------- 1021 --(g------ ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- --gu--gagg gggagggggu uaaac-cacc ac-------- 1141 ------cacc acca------ caca------ ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 ---------- ---------- ---------- ---------- ---------- ---------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- ---------- -)-------- ---------- 1561 ---------- ---------- ---------- ---------- ---------- ---------- 1621 ---------- --G--CUGC| --UA|CUUU- C-U-C|AAAU |UG--C-GGG |AACA----| 1681 C-CC------ ---------- ---------- -|Ua------ ---------- ---------- 1741 ---------- ---------- ---------- ---------- --------AA GC|------C 1801 AG-------- CA-GA|U-AC C|-------- ---------- ---------- ---------- 1861 ---|GCG-G- CC-C-G---- -G-CGg(aua a--------- ---------- ---------- 1921 ---------- -)-CGU--CG --G-G---U- G-C|agca|G C-C-U-G-GG (uagcg---- 1981 ---------- --------)C CC-U-G--G- U|-------G GA-U|GGU-A ACA-AC-UU- 2041 UG--C-UG-| -gau------ ------|aaa aacgccgccu gccauacaua cauaggcaaa 2101 aaaaaggggc gu-------- -----uaa-a u|-------- ---------- ---------- 2161 ---------- ---------- ---------- --GGG|-CAA -|UC-CGCA| GCC|-AAg-- 2221 |CUCC----- ------(--- ---------- ---------- ---------- ---------- 2281 ---------- ----)|-|g| uu----|auu ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------a uu-|a|u|-- ---------- GGAG|--AA| GGU|--UCA| CA-GACU-G| 2521 -UA-|GGG-A --A-GG|G|G Uuccaccccu c--------- -(aucaccca cccgauuggu 2581 ggcga----- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----gaggg 2701 g-gagaGCU- |UAA-GA-GA |CA-GUC|G| -|GU-----| c----|cccu gc-------- 2761 ----(-GAA- ---------- )--------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---------- ---------- 2881 --|------- gc--a-g-u- g|-------- --|-ucucau a--------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- -------gag gaa|ggugc- ucau(--gaa 3121 aa-------- ---------- ---------- ---------- ---------- ---------- 3181 ---------- ---------- -----)gugg g-cacu|--- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ---------- ---------- ---------- ---------- ---------- ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- --|-ggaga- g--|------ ---------- --c---cgug 4021 aga|------ --------|a gucuuga~~~ ~~~~~----- ---------- ---------~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~---- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 --------~~ --~~~~~~~~ ~~~~~~~~~| ~~~~~~~|~- -||~~~-~~~ ~~~~~~| // LOCUS Por.sp.6.2 4557 bp RNA RNA 25-JUL-1999 DEFINITION Porphyra sp.. ACCESSION No information KEYWORDS No information. SOURCE Porphyra sp. ORGANISM Porphyra sp. REFERENCE 1 (bases 1 to 3004) AUTHORS Broom,J.E., Jones,W.A., Hill,D.F., Knight,G.A. and Nelson,W.A . TITLE Species recognition in New Zealand Porphyra using 18S rDNA sequencing JOURNAL J. Appl. Phycol. (1999) In press STANDARD No information COMMENTS Sequence information (bases 1 to 4557) Corresponding GenBank entry: AF136425 LOCUS AF136425 2835 bp DNA PLN 25-JUL-1999 DEFINITION Porphyra sp. isolate RAK049 18S ribosomal RNA gene, partial sequence. ACCESSION AF136425 NID g5579324 VERSION AF136425.1 GI:5579324 KEYWORDS . SOURCE Porphyra sp. ORGANISM Porphyra sp. Eukaryota; Rhodophyta; Bangiophyceae; Bangiales; Bangiaceae; Porphyra. REFERENCE 1 (bases 1 to 2835) AUTHORS Broom,J.E., Jones,W.A., Hill,D.F., Knight,G.A. and Nelson,W.A. TITLE Species recognition in New Zealand Porphyra using 18S rDNA sequencing JOURNAL J. Appl. Phycol. (1999) In press REFERENCE 2 (bases 1 to 2835) AUTHORS Broom,J.E., Jones,W.A., Hill,D.F., Knight,G.A. and Nelson,W.A. TITLE Direct Submission JOURNAL Submitted (19-MAR-1999) Department of Biochemistry, University of Otago, PO Box 56, Dunedin, New Zealand FEATURES Location/Qualifiers source 1..2835 /organism="Porphyra sp." /isolate="RAK049" /db_xref="taxon:2790" /dev_stage="gametophyte" /country="New Zealand: Kaikoura 42 31S, 173 30E" rRNA join(<1..546,1088..>2229) /product="18S ribosomal RNA" intron 547..1087 /note="putative group I" intron 2230..>2835 /note="putative group I" BASE COUNT 725 a 639 c 813 g 658 t BASE COUNT 126 a 131 c 160 g 106 t 4034 others ORIGIN 1 |gucguaaca aggU||uuc- -------(-- ---------- ---------- ---------- 61 ---------- ---------- --)|------ ---------- ----c|---- ---------( 121 -------)-- ---------| --[guauuuu -guggauggg guacc----- cagagg---- 181 -ccuuuucuu uuaucaaagc gccauauacc uggagguccc cccuuccgua ggaaaacgua 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- ---------- 661 ---------- ---------- ---------- c]--|----- -------|-- ---------- 721 |----ac|-- --gaa|Gccu u---|----- ---------- ---|UGCG-- ---------- 781 gccc-(gaaa --)-g-ggu- ---------g cacagu---g cgcgacuau- ---------- 841 ---aaac-aa ugauu----- -----cugug gucaa----- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 -------CGC A|--A----- -----|GCA- GC-------- ---------- ---------- 1021 --(g------ ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- --gu--u-cu gug------g ---------a ag-------- 1141 ------a--- ---------- -aca------ ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 ---------- ---------- ---------- ---------- ---------- ---------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- ---------- -)-------- ---------- 1561 ---------- ---------- ---------- ---------- ---------- ---------- 1621 ---------- --G--CUGC| --GA|CUUU- C-U-C|AAAU |UG--C-GGG |AACA----| 1681 C-CC------ ---------- ---------- -|Ua------ ---------- ---------- 1741 ---------- ---------- ---------- ---------- --------AA GU|------C 1801 AA-------- CA-AA|C-AC C|-------- ---------- ---------- ---------- 1861 ---|GCG-G- CC-G-G---- -A-GUG(aaa g--------- ---------- ---------- 1921 ---------- -)-CGU--CU --G-G---C- G-C|agca|G C-C-C-G-GG (uagcg---- 1981 ---------- --------)C CC-U-G--G- C|-------G GA-U|GGU-A AUA-GC-UU- 2041 UG--U-UG-| -aau------ ------|-gg cac------- ---------- ---------- 2101 ---------- ---------- --------aa u|-------- ---------- ---------- 2161 ---------- ---------- ---------- --GGG|-CAA -|UC-CGCA| GCC|-AAg-- 2221 |CCCC----- ------(--- ---------- ---------- ---------- ---------- 2281 ---------- ----)|-|u| ac----|ggc ccauc----- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 --------gg gc-|a|u|-- ---------- GGGG|--AA| GGU|--UCA| CA-GACU-G| 2521 -UAU|GGG-G --A-GG|G|G Uuuucugu-- ---------- -(ucc----- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- --------ac 2701 a-gagaGCU- |UAA-GA-GA |CA-GUC|G| -|GU-----| c----|cccu gc-------- 2761 ----(-GAAA ---------- )--------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---------- ---------- 2881 --|------- gc--a-g-u- g|-------- --|-ucccau g--------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- -|----ugag gaa|ggcac- ccau(--gaa 3121 aa-------- ---------- ---------- ---------- ---------- ---------- 3181 ---------- ---------- -----)gugg g-cgcu|--- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ---------- ---------- ---------- ---------- ---------- ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- --|-ggaga- g--|------ ---------- --c---caug 4021 gga|------ --------|g ccccguc--- ---------- ---------- ---------( 4081 aag------- ---------- ---------- ---------- ---------- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- ---------- --------gg u-gggg|a-- --------gu uuucc~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~---- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 --------~~ --~~~~~~~~ ~~~~~~~~~| ~~~~~~~|~- -||~~~-~~~ ~~~~~~| // LOCUS Por.li.1.2 4557 bp RNA RNA 25-JUL-1999 DEFINITION Porphyra lilliputiana.. ACCESSION No information KEYWORDS No information. SOURCE Porphyra lilliputiana. ORGANISM Porphyra lilliputiana. REFERENCE 1 (bases 1 to 3004) AUTHORS . Broom,J.E., Jones,W.A., Hill,D.F., Knight,G.A. and Nelson,W.A TITLE sequencing Species recognition in New Zealand Porphyra using 18S rDNA JOURNAL J. Appl. Phycol. (1999) In press STANDARD No information COMMENTS Sequence information (bases 1 to 4557) Corresponding GenBank entry: AF136424 LOCUS AF136424 2804 bp DNA PLN 25-JUL-1999 DEFINITION Porphyra lilliputiana 18S ribosomal RNA gene, partial sequence. ACCESSION AF136424 NID g5579323 VERSION AF136424.1 GI:5579323 KEYWORDS . SOURCE Porphyra lilliputiana. ORGANISM Porphyra lilliputiana Eukaryota; Rhodophyta; Bangiophyceae; Bangiales; Bangiaceae; Porphyra. REFERENCE 1 (bases 1 to 2804) AUTHORS Broom,J.E., Jones,W.A., Hill,D.F., Knight,G.A. and Nelson,W.A. TITLE Species recognition in New Zealand Porphyra using 18S rDNA sequencing JOURNAL J. Appl. Phycol. (1999) In press REFERENCE 2 (bases 1 to 2804) AUTHORS Broom,J.E., Jones,W.A., Hill,D.F., Knight,G.A. and Nelson,W.A. TITLE Direct Submission JOURNAL Submitted (19-MAR-1999) Department of Biochemistry, University of Otago, PO Box 56, Dunedin, New Zealand FEATURES Location/Qualifiers source 1..2804 /organism="Porphyra lilliputiana" /db_xref="taxon:99748" /dev_stage="gametophyte" /country="New Zealand: Wellington 41 21S, 174 47E" rRNA join(<1..546,1039..>2277) /product="18S ribosomal RNA" intron 547..1038 /note="putative group I" intron 2278..2804 /note="putative group I" BASE COUNT 720 a 613 c 790 g 668 t 13 others BASE COUNT 142 a 126 c 152 g 110 t 4027 others ORIGIN 1 |aucguaaca gggU||uuu- -------(-- ---------- ---------- ---------- 61 ---------- ---------- --)|------ ---------- ---gc|---- ---------( 121 ---n---)-- ---------| --[guau--- ---------- ---cca--ca cagugcgaa- 181 --cguuucuc nauccuuucg cnggnaaaac gua------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- ---------- 661 ---------- ---------- ---------- c]--|----- -------|-- ---------- 721 |----ac|-- --gaa|Gccu u---|----- ---------- ---|UGCA-- ---------- 781 gccc-(gaua a-)-g-ggu- ---------g cacagu---a cgcgacucu- ---------- 841 ---aaaacac ugaga----- -----cugug gucaa----- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 -------UGC A|--A----- -----|GCG- GC-------- ---------- ---------- 1021 --(g------ ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- --gug---ug gagaguuugc cucgcuucna cggggcggca 1141 cacacacaca --ca------ caca------ ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 ---------- ---------- ---------- ---------- ---------- ---------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- ---------- -)-------- ---------- 1561 ---------- ---------- ---------- ---------- ---------- ---------- 1621 ---------- --G--GUGG| --GA|CUUU- C-U-C|AAAU |UG--C-GGG |AACA----| 1681 C-CC------ ---------- ---------- -|Ua------ ---------- ---------- 1741 ---------- ---------- ---------- ---------- --------AA GU|------C 1801 GA-------- CA-GA|U-AC C|-------- ---------- ---------- ---------- 1861 ---|GCG-G- CCuA-U---- -G-GCG(aaa ---------- ---------- ---------- 1921 ---------- -)-CGC--UA UcG-G---Gu GCc|agca|G U-N-G-G-GG (uagug---- 1981 ---------- --------)C CC-U-G--A- U|-------G GN-C|GGU-A ACA-AN-UC- 2041 UG--U-NG-| -aau------ ------|gga caagccagcu ucucucucuc uuunugagaa 2101 a---g----- -aug-gcucg a-----aa-a u|-------- ---------- ---------- 2161 ---------- ---------- ---------- --GGG|-CAA -|UC-CGCA| GCC|-AAg-- 2221 |CCUC----- ------(--- ---------- ---------- ---------- ---------- 2281 ---------- ----)|-|u| aa----|ggu cuuucaucu- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 -----ug-ac ua-|g|g|-- ---------- GGGA|--AA| GGU|--UCA| CA-GACU-G| 2521 -UAA|GGG-A --A-GG|G|G Uucu-uuc-- ---------- -(acu----- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- --------ga 2701 aaaaggGCU- |UAA-GA-GA |CA-GUC|G| -|NU-----| c----|cccu gc-------- 2761 ----(-GAAA ---------- )--------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---------- ---------- 2881 --|------- gc--a-g-a- g|-------- --|-ucucag a--------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- -|----agag gaa|ggcgc- uuau(--gaa 3121 aa-------- ---------- ---------- ---------- ---------- ---------- 3181 ---------- ---------- -----)guag g-cgcu|--- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ---------- ---------- ---------- ---------- ---------- ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- --|-ggaga- g--|~~~~~~ ~~~~~~~~~~ ~~~---~~~~ 4021 ~~~|---~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~----- ---------- ---------~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ---------- ---------- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- ---------- ---------- ---------- ---------- ---------- 4261 ---------- ---------- ---------- -~~~~~~~~~ ~~~~~~~~~~ ~~~~~~---- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 --------~~ --~~~~~~~~ ~~~~~~~~~| ~~~~~~~|~- -||~~~-~~~ ~~~~~~| // LOCUS Por.sp.7.1 4557 bp RNA RNA 25-JUL-1999 DEFINITION Porphyra sp.. ACCESSION No information KEYWORDS No information. SOURCE Porphyra sp. ORGANISM Porphyra sp. REFERENCE 1 (bases 1 to 3004) AUTHORS . Broom,J.E., Jones,W.A., Hill,D.F., Knight,G.A. and Nelson,W.A TITLE sequencing Species recognition in New Zealand Porphyra using 18S rDNA JOURNAL J. Appl. Phycol. (1999) In press STANDARD No information COMMENTS Sequence information (bases 1 to 4557) Corresponding GenBank entry: AF136422 LOCUS AF136422 2382 bp DNA PLN 25-JUL-1999 DEFINITION Porphyra sp. isolate LGD030 18S ribosomal RNA gene, partial sequence. ACCESSION AF136422 NID g5579321 VERSION AF136422.1 GI:5579321 KEYWORDS . SOURCE Porphyra sp. ORGANISM Porphyra sp. Eukaryota; Rhodophyta; Bangiophyceae; Bangiales; Bangiaceae; Porphyra. REFERENCE 1 (bases 1 to 2382) AUTHORS Broom,J.E., Jones,W.A., Hill,D.F., Knight,G.A. and Nelson,W.A. TITLE Species recognition in New Zealand Porphyra using 18S rDNA sequencing JOURNAL J. Appl. Phycol. (1999) In press REFERENCE 2 (bases 1 to 2382) AUTHORS Broom,J.E., Jones,W.A., Hill,D.F., Knight,G.A. and Nelson,W.A. TITLE Direct Submission JOURNAL Submitted (19-MAR-1999) Department of Biochemistry, University of Otago, PO Box 56, Dunedin, New Zealand FEATURES Location/Qualifiers source 1..2382 /organism="Porphyra sp." /isolate="LGD030" /db_xref="taxon:2790" /dev_stage="gametophyte" /country="New Zealand: Wellington 41 21S, 174 48E" rRNA <1..>1777 /product="18S ribosomal RNA" intron 1778..2382 /note="putative group I" BASE COUNT 629 a 491 c 648 g 605 t 9 others BASE COUNT 173 a 135 c 180 g 132 t 3937 others ORIGIN 1 |gucguaaca aggU||uuc- -------(-- ---------- ---------- ---------- 61 ---------- ---------- --)|------ ---------- ----c|---- ---------( 121 -------)-- ---------| --[-aagu-a gaacagaaac aucuuuaauc ggacggcguc 181 cacgaugaau guccuucugu gggaagcgcu u--------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- ---------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 ----acc|-- --gaa|Gccu u---|----- ---------- ---|UGCA-- ---------- 781 gccu-(gaaa --)-g-ggu- ---------g gcgauc---- -gcgacuau- ---------- 841 ---aaag-aa ggagu----- -----cgacu ugaa------ ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 -------UGC A|--A----- -----|GCG- GC-------- ---------- ---------- 1021 --(g------ ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- --gaagcgaa gcaaucccgu gcgcucuggg augaugaacg 1141 aaccgcgcag ggcgcgggca ucguagacgu ucguccucac accucacgug gaaaaugcuu 1201 ca-------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 ---------- ---------- ---------- ---------- ---------- ---------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- ---------- -)-------- ---------- 1561 ---------- ---------- ---------- ---------- ---------- ---------- 1621 ---------- --G--CUGC| --AA|CUUU- C-U-C|AAAU |UG--C-GGG |AACA----| 1681 C-CC------ ---------- ---------- -|Ua------ ---------- ---------- 1741 ---------- ---------- ---------- ---------- --------AA GU|------C 1801 AG-------- AA-GA|U-AC C|-------- ---------- ---------- ---------- 1861 ---|GCG-G- CA-U-C---- -U-UG-(gau aa-------- ---------- ---------- 1921 ---------- -)-CAA--GU --U-G---U- G-C|agca|G C-A-U-G-GG (uagcg---- 1981 ---------- --------)C CC-U-U--G- U|-------G GA-U|GGU-A AAA-AC-UC- 2041 UU--C-UG-| -aau------ ------|uga uauccuuccg u--gaagggu ugag------ 2101 ---------- ---------- --------aa u|-------- ---------- ---------- 2161 ---------- ---------- ---------- --GGG|-CAA -|UC-CGCA| GCC|-AAg-- 2221 |CUCC----- ------(--- ---------- ---------- ---------- ---------- 2281 ---------- ----)|-|g| au----|acu cuuugu---- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 --------gu ga-|g|u|-- ---------- GGAG|--AA| GGU|--UCA| CA-GACU-G| 2521 -UAA|GGG-A --A-GG|G|G Uucu-c---- ---------- -(cauaaa-- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 g-gagaGCU- |UAA-GA-GA |CA-GUC|G| -|GU-----| cc---|cccu gc-------- 2761 ----(-GAAA ---------- )--------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---------- ---------- 2881 --|------- gc--a-g-a- g|-------- --|-uucugg ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ------ggag gaa|ggaca- uucu(--gaa 3121 aa-------- ---------- ---------- ---------- ---------- ---------- 3181 ---------- ---------- -----)ggaa a-gucu|--- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ---------- ---------- ---------- ---------- ---------- ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- --|-ggaga- g--|------ ---------- --u---nuca 4021 gaa|------ --------|g ccuug----- ---------- ---------- ---------( 4081 agac------ ---------- ---------- ---------- ---------- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- ---------- ---------c a-aggu|g-- --------gu aguuuccaaa 4261 gagnuacaua acguuc~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~---- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 --------~~ --~~~~~~~~ ~~~~~~~~~| ~~~~~~~|~- -||~~~-~~~ ~~~~~~| // LOCUS Por.sp.4.2 4557 bp RNA RNA 25-JUL-1999 DEFINITION Porphyra sp. GRB108 str. GRB108. ACCESSION No information KEYWORDS No information. SOURCE Porphyra sp. GRB108 str. GRB108. ORGANISM Porphyra sp. GRB108. REFERENCE 1 (bases 1 to 3004) AUTHORS . Broom,J.E., Jones,W.A., Hill,D.F., Knight,G.A. and Nelson,W.A TITLE sequencing Species recognition in New Zealand Porphyra using 18S rDNA JOURNAL J. Appl. Phycol. (1999) In press STANDARD No information COMMENTS Sequence information (bases 1 to 4557) Corresponding GenBank entry: AF136420 LOCUS AF136420 2845 bp DNA PLN 25-JUL-1999 DEFINITION Porphyra sp. isolate GRB108 18S ribosomal RNA gene, partial sequence. ACCESSION AF136420 NID g5579319 VERSION AF136420.1 GI:5579319 KEYWORDS . SOURCE Porphyra sp. ORGANISM Porphyra sp. Eukaryota; Rhodophyta; Bangiophyceae; Bangiales; Bangiaceae; Porphyra. REFERENCE 1 (bases 1 to 2845) AUTHORS Broom,J.E., Jones,W.A., Hill,D.F., Knight,G.A. and Nelson,W.A. TITLE Species recognition in New Zealand Porphyra using 18S rDNA sequencing JOURNAL J. Appl. Phycol. (1999) In press REFERENCE 2 (bases 1 to 2845) AUTHORS Broom,J.E., Jones,W.A., Hill,D.F., Knight,G.A. and Nelson,W.A. TITLE Direct Submission JOURNAL Submitted (19-MAR-1999) Department of Biochemistry, University of Otago, PO Box 56, Dunedin, New Zealand FEATURES Location/Qualifiers source 1..2845 /organism="Porphyra sp." /isolate="GRB108" /db_xref="taxon:2790" /dev_stage="gametophyte" /country="New Zealand: Otago 45 08S, 171 58E" rRNA join(<1..549,1109..>2336) /product="18S ribosomal RNA" intron 550..1108 /note="putative group I" intron 2337..>2845 /note="putative group I" BASE COUNT 740 a 616 c 796 g 692 t 1 others BASE COUNT 136 a 126 c 158 g 110 t 4027 others ORIGIN 1 |gucguaaca aggU||uu-- -------(-- ---------- ---------- ---------- 61 ---------- ---------- --)|------ ---------- -----|---- ---------( 121 -------)-- ---------| --[gcuaagg caacagaagu cucuugcaaa guucaugagu 181 gcccuucugu gggaaacgcu uuc------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- ---------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 ------c|-- --gaa|Gccu u---|----- ---------- ---|UGCA-- ---------- 781 gccc-(gaaa --)-g-ggu- ---------g gcgau----- cgcgacuugu c--------- 841 ---aaaa-ac aaaga----- -----aucgg cuugaa---- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 -------UGC A|--A----- -----|GCA- GC-------- ---------- ---------- 1021 --(g------ ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- --gac-u-gu uug------g ---------- -u-------- 1141 ---------- ---------- --ca------ ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 ---------- ---------- ---------- ---------- ---------- ---------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- ---------- -)-------- ---------- 1561 ---------- ---------- ---------- ---------- ---------- ---------- 1621 ---------- --G--CUGC| --GA|CUUU- C-U-C|AAAU |UG--C-GGG |AACA----| 1681 C-CC------ ---------- ---------- -|Ua------ ---------- ---------- 1741 ---------- ---------- ---------- ---------- --------AA GC|------C 1801 GA-------- GA-GA|U-AC C|-------- ---------- ---------- ---------- 1861 ---|GCG-G- UU-U-C---- -G-UG-(gac aucaa----- ---------- ---------- 1921 ---------- -)-CAC--GG --A-G---C- G-C|agca|G C-A-A-G-GG (uaacg---- 1981 ---------- --------)C CC-C-U--G- C|-------G GA-U|GGU-A ACA-AC-UC- 2041 UC--U-CG-| -gau------ ------|auu ---uguuuga caaaaaca-- ---------- 2101 --------ug ac-------- ---------a u|-------- ---------- ---------- 2161 ---------- ---------- ---------- --GGG|-CAA -|UC-CGCA| GCC|-AAg-- 2221 |CUCC----- ------(--- ---------- ---------- ---------- ---------- 2281 ---------- ----)|-|g| uu----|uuc uguccaggca acau------ ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---ucug-gc ag-|g|u|-- ---------- GGAG|--AA| GGU|--UCA| CA-GACU-G| 2521 -UAA|GGG-A --A-GG|G|G Uacucuc--- ---------- -(uuugccag gaaaacggc- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- --------ga 2701 gagcguGCU- |UAA-GA-GA |CA-GUC|G| -|GU-----| c----|cccu gc-------- 2761 ----(-GAAA ---------- )--------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---------- ---------- 2881 --|------- gc--a-g-u- g|-------- --|-uucugu ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ------ggag gac|ggugu- ccgc(--gaa 3121 g--------- ---------- ---------- ---------- ---------- ---------- 3181 ---------- ---------- -----)gcgg u-uacc|--- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ---------- ---------- ---------- ---------- ---------- ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- --|-cgaga- g--|------ ---------- --c---cacg 4021 gaa|------ --------|g ucccau---- ---------- ---------- ---------( 4081 gcggg----- ---------- ---------- ---------- ---------- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- ---------- ---------- a-uggg|u-- --------ag u~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~---- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 --------~~ --~~~~~~~~ ~~~~~~~~~| ~~~~~~~|~- -||~~~-~~~ ~~~~~~| // LOCUS Por.sp.8.1 4557 bp RNA RNA 25-JUL-1999 DEFINITION Porphyra sp. str. LGD018. ACCESSION No information KEYWORDS No information. SOURCE Porphyra sp. str. LGD018. ORGANISM Porphyra sp. REFERENCE 1 (bases 1 to 3004) AUTHORS Broom,J.E., Jones,W.A., Hill,D.F., Knight,G.A. and Nelson,W.A . TITLE Species recognition in New Zealand Porphyra using 18S rDNA sequencing JOURNAL J. Appl. Phycol. (1999) In press STANDARD No information COMMENTS Sequence information (bases 1 to 4557) Corresponding GenBank entry: AF136421 LOCUS AF136421 2822 bp DNA PLN 25-JUL-1999 DEFINITION Porphyra sp. isolate LGD018 18S ribosomal RNA gene, partial sequence. ACCESSION AF136421 NID g5579320 VERSION AF136421.1 GI:5579320 KEYWORDS . SOURCE Porphyra sp. ORGANISM Porphyra sp. Eukaryota; Rhodophyta; Bangiophyceae; Bangiales; Bangiaceae; Porphyra. REFERENCE 1 (bases 1 to 2822) AUTHORS Broom,J.E., Jones,W.A., Hill,D.F., Knight,G.A. and Nelson,W.A. TITLE Species recognition in New Zealand Porphyra using 18S rDNA sequencing JOURNAL J. Appl. Phycol. (1999) In press REFERENCE 2 (bases 1 to 2822) AUTHORS Broom,J.E., Jones,W.A., Hill,D.F., Knight,G.A. and Nelson,W.A. TITLE Direct Submission JOURNAL Submitted (19-MAR-1999) Department of Biochemistry, University of Otago, PO Box 56, Dunedin, New Zealand FEATURES Location/Qualifiers source 1..2822 /organism="Porphyra sp." /isolate="LGD018" /db_xref="taxon:2790" /dev_stage="gametophyte" /country="New Zealand: Wellington 41 21S, 174 48E" rRNA <1..>1813 /product="18S ribosomal RNA" intron 1814..2822 /note="putative group I" BASE COUNT 718 a 617 c 778 g 703 t 6 others BASE COUNT 259 a 244 c 294 g 223 t 3537 others ORIGIN 1 |~~~~~~~ca aggU||uuc- -------(-- ---------- ---------- ---------- 61 ---------- ---------- --)|------ ---------- ----c|---- ---------( 121 -------)-- ---------| --[guauu-u uguggauagc caacgcacau aacauaaagu 181 cuuuacugug acauaucccu uauuuuugac agucuuggag ucagcgguua aaggcacgcc 241 ggucaugaag acacacaaga uugggauuuc cccgaaaaua ugugcaguac gagcgugucu 301 uguucagcuc accugacucg aaagucaugu gcgacggacg gacgccucgc uuguugccgc 361 acagauggga agccucuncu ccaggcgcag gauggcguug cguuugcauc accgccgcca 421 guagguggca guaguauuug accccacgcc aucgcacuug aacauagccg uuggcggcug 481 ggacauaauc ggugaugugg cagccaaagg cgucuaccuc cgugugggua uuaaucugca 541 ugaagaugga agccauguca gcgacggggg gaggugccau ggugauuacg guaauguucg 601 uuggcccuuc cgugggaaga cgu------- ---------- ---------- ---------- 661 ---------- ---------- ---------- c]--|----- -------|-- ---------- 721 |----ac|-- --gaa|Gccu u---|----- ---------- ---|UGCG-- ---------- 781 gccu-(gaaa --)-a-ggu- ---------g cacagc---g cgcgacaau- ---------- 841 ---aaacuau ugacg----- -----cugug guaaa----- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 -------C-C A|--A----- -----|GCA- GC-------- ---------- ---------- 1021 --(g------ ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- --gug-a-gg gug------g ggggg-uuaa ac-------- 1141 ------cacc acca------ caca------ ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 ---------- ---------- ---------- ---------- ---------- ---------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- ---------- -)-------- ---------- 1561 ---------- ---------- ---------- ---------- ---------- ---------- 1621 ---------- --G--CUGC| --UA|CUUU- C-U-C|AAAU |UG--C-GGG |AACA----| 1681 C-CC------ ---------- ---------- -|Ua------ ---------- ---------- 1741 ---------- ---------- ---------- ---------- --------AA GC|------C 1801 AG-------- CA-GA|U-AC C|-------- ---------- ---------- ---------- 1861 ---|GCG-G- CC-C-G---- -G-CG-(gau aa-------- ---------- ---------- 1921 ---------- -)-CGU--CG --G-G---U- G-C|agca|G C-C-U-G-GG (uagcg---- 1981 ---------- --------)C CC-U-G--G- U|-------G GA-U|GGU-A ACA-AC-UU- 2041 UG--C-UG-| -gau------ ------|aaa aacgccgccu gccauacaua cauaggcaaa 2101 aaaaaggggc gu-------- -----uaa-a u|-------- ---------- ---------- 2161 ---------- ---------- ---------- --GGG|-CAA -|U--CGCA| GCC|-AAg-- 2221 |CUCC----- ------(--- ---------- ---------- ---------- ---------- 2281 ---------- ----)|-|g| uu----|--- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 -----au-ua uu-|a|u|-- ---------- GGAG|--AA| GGU|--UCA| CA-GACU-G| 2521 -UAA|GGG-A --A-GG|G|G Uuccaccccc cuc------- -(aucaccca cccgauuggu 2581 ggcga----- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----gaggg 2701 ggaagaGCU- |UAA-GA-GA |CA-GUC|G| -|GU-----| c----|cccu gc-------- 2761 ----(-GAAA ---------- )--------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---------- ---------- 2881 --|------- gc--a-g-u- g|-------- --|-ucucau a--------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- -|----ggag gaa|ggugc- ucau(--gaa 3121 aa-------- ---------- ---------- ---------- ---------- ---------- 3181 ---------- ---------- -----)gugg g-cacu|--- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ---------- ---------- ---------- ---------- ---------- ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- --|-ggaga- g--|------ ---------- --c---caug 4021 aga|------ --------|g ucuu------ ---------- ---------- ---------( 4081 gauuu----- ---------- ---------- ---------- ---------- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- ---------- ---------- a-agau|g-- --------gg uauuuuuucc 4261 uaaacaauga aacacacacu uuccgunggu ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~---- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 --------~~ --~~~~~~~~ ~~~~~~~~~| ~~~~~~~|~- -||~~~-~~~ ~~~~~~| // LOCUS Hil.r.8.1 4557 bp RNA RNA 15-JAN-1993 DEFINITION Hildenbrandia rubra. ACCESSION No information KEYWORDS No information. SOURCE Hildenbrandia rubra. ORGANISM Hildenbrandia rubra. REFERENCE 1 (bases 1 to 3004) AUTHORS Mark Ragan;Carolyn Bird;Ellen Rice;Rama Singh TITLE The nuclear 18S ribosomal RNA gene of the red alga Hil... JOURNAL NAR vol 21 num 16 p 3898 STANDARD No information COMMENTS Sequence information (bases 1 to 4557) Corresponding GenBank entry: L19345 LOCUS HLDRGEA 2283 bp DNA PLN 14-MAR-1994 DEFINITION Hildenbrandia rubra 18S ribosomal RNA gene, complete exons. ACCESSION L19345 NID g348832 VERSION L19345.1 GI:348832 KEYWORDS 18S ribosomal RNA. SOURCE Hildenbrandia rubra vegetative DNA. ORGANISM Hildenbrandia rubra Eukaryota; Rhodophyta; Florideophyceae; Hildenbrandiales; Hildenbrandiaceae; Hildenbrandia. REFERENCE 1 (bases 1 to 2283) AUTHORS Ragan,M.A., Bird,C.J., Rice,E.L. and Singh,R.K. TITLE The nuclear 18S ribosomal RNA gene of the red alga Hildenbrandia rubra contains a group I intron JOURNAL Nucleic Acids Res. 21, 3898-3898 (1993) MEDLINE 93376522 FEATURES Location/Qualifiers source 1..2283 /organism="Hildenbrandia rubra" /db_xref="taxon:31481" /tissue_type="vegetative" primer_bind 1..22 /note="PCR amplification primer; putative" exon 23..1750 /note="putative" /product="18S ribosomal RNA" intron 1751..2252 /note="group I intron; putative" exon 2253..2256 /note="putative" /product="18S ribosomal RNA" primer_bind 2257..2281 /note="PCR amplification primer; putative" BASE COUNT 563 a 476 c 684 g 559 t 1 others BASE COUNT 122 a 114 c 167 g 121 t 4033 others ORIGIN 1 |~~~guaaca aggU||uuu- -------(-- ---------- ---------- ---------- 61 ---------- ---------- --)|------ ---------- -----|---- ---------( 121 -------)-- ---------| --[au(ccu) ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- ---------- 661 ---------- ---------- ---------a u]--|----- -------|-- ---------- 721 |-----g|-- --gaa|Gccu u---|----- ---------- ---|UGCA-- ---------- 781 gccc-(gaug aa)-g-ggu- ---------g ggcg-c---u cgcgacuaga u--------- 841 ---aaau-aa ugacgaa--- ------ugcc ugaaa----- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 -------UGC A|--A----- -----|GCG- GC-------- ---------- ---------- 1021 --(g------ ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- -------gaa caucu(cuuu ua-------- 1141 -----)gggu guuug----- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 ---------- ---------- ---------- ---------- ---------- ---------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- ---------- -)-------- ---------- 1561 ---------- ---------- ---------- ---------- ---------- ---------- 1621 ---------- --G--CCGC| --GA|UCUU- C-U-C|AAAU |UG--C-GGG |AAAA----| 1681 gugc------ ---------- ---------- -|Ucaaa--- ---------- ---------- 1741 ---------- ---------- ---------- ---------- --------UU GG|------C 1801 CG------ua AA-GA|C-AC C|-------- ---------- ---------- ---------- 1861 ---|GCG-G- CU-CUU---- -G-UG-(gac aa-------- ---------- ---------- 1921 ---------- -)-CAC--AG --A-G---U- G-C|agca|G G-C-G-g-gg (uagca---- 1981 ---------- --------)c cc-U-G--C- U|-------G GA-U|GGU-A ACA-GA-UC- 2041 UUu-C-GG-| -Aca------ ------|--- ---------- ---------- --(cgg---- 2101 ---)------ ---------- ---------- -|-------- ---------- ---------- 2161 ---------- ---------- ---------- --GCC|-UAA -|UC-CGCA| GCC|-AAg-- 2221 |CUCC----- ------(--- ---------- ---------- ---------- ---------- 2281 ---------- ----)|-|G| UA----|gcg cauu------ ---------- ---------- 2341 (u-uug-uu- ---------- ---------- ---------- ---------- ---------- 2401 -------)-- ---------- ---------- ---------- ---------- -------|-- 2461 ----agu-gc gu-|c|-|-- ---------- GGAG|--AA| GGU|--UCA| CA-GACU-G| 2521 -UAA|GGG-A --A-GG|G|G UUcgcac--- ---------- -(uugu---- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------) ---------- 2701 gugcgGGCU- |UAA-GA-GA |CA-GUC|G| -|GU-----| cc---|cucu gu-------- 2761 ----(-GAGA ---------- )--------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---------- ---------- 2881 --|------- gc--a-g-a- g|-------- --|-uuccgg gu-------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- -|---uugag gaa|ggugc- gccg(--ccg 3121 acaaa----- ---------- ---------- ---------- ---------- ---------- 3181 ---------- ---------- -----)uggg c-cacc|--- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ---------- ---------- ---------- ---------- ---------- ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- --|-agaga- g--|------ ---------- -cg---ccug 4021 gag|------ --------|a gucg------ ---------- ---------- ---------( 4081 uguguuuugc ggguguuugc ggauaacucg cgcgcgugau ---------- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- --------|- ---------- u-ggcu|--- ---------- ---------u 4261 uucuga(acg gaa------- ---------- ---------- )ucaaaaa-- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------| -----AU|G- -||uuc-cgu agguga| // LOCUS Hil.r.9.1 4557 bp RNA RNA 14-SEP-1998 DEFINITION Hildenbrandia rubra.. ACCESSION No information KEYWORDS No information. SOURCE Hildenbrandia rubra. ORGANISM Hildenbrandia rubra. REFERENCE 1 (bases 1 to 3004) AUTHORS Saunders,G.W. and Bailey,J.C. TITLE Apophlaea is a member of the Hildenbrandiales (Rhodophyta, Florideophycidae) Molecular systematic analyses indicate that the enigmatic JOURNAL Unpublished STANDARD No information COMMENTS Sequence information (bases 1 to 4557) Corresponding GenBank entry: AF076995 LOCUS AF076995 2268 bp DNA PLN 14-SEP-1998 DEFINITION Hildenbrandia rubra small subunit ribosomal RNA gene, complete sequence. ACCESSION AF076995 NID g3598963 KEYWORDS . SOURCE Hildenbrandia rubra. ORGANISM Hildenbrandia rubra Eukaryota; Rhodophyta; Florideophyceae; Hildenbrandiales; Hildenbrandiaceae; Hildenbrandia. REFERENCE 1 (bases 1 to 2268) AUTHORS Saunders,G.W. and Bailey,J.C. TITLE Molecular systematic analyses indicate that the enigmatic Apophlaea is a member of the Hildenbrandiales (Rhodophyta, Florideophycidae) JOURNAL Unpublished REFERENCE 2 (bases 1 to 2268) AUTHORS Saunders,G.W. and Bailey,J.C. TITLE Direct Submission JOURNAL Submitted (09-JUL-1998) Biology, University of New Brunswick, Fredericton, NB E3B 6E1, Canada FEATURES Location/Qualifiers source 1..2268 /organism="Hildenbrandia rubra" /db_xref="taxon:31481" primer_bind 1..20 /note="Hild2" rRNA join(21..1724,2238..2241) /note="nuclear SSU rRNA" /product="small subunit ribosomal RNA" intron 1725..2237 /note="putative group I intron" primer_bind complement(2242..2268) /note="G07" BASE COUNT 577 a 481 c 658 g 551 t 1 others BASE COUNT 148 a 121 c 153 g 114 t 4021 others ORIGIN 1 |gucguaaca aggU||uuc- -------(-- ---------- ---------- ---------- 61 ---------- ---------- --)|------ ---------- ---ac|---- ---------( 121 -------)-- ---------| --[au(uga) ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ----)----- ---------- 601 ---------- ---------- ---------- ---------- ---------- ---------- 661 ---------- ---------- ---------a u]--|----- -------|-- ---------- 721 |---acg|-- --gaa|Gccu u---|----- ---------- ---|UGCA-- ---------- 781 gccc-(gaua a-)-g-ggu- ---------g ggcg-c---u cgcgacuuuu au-------- 841 --aucauaua unaaaauaau gacagcagcc ugaaa----- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 -------UGC A|--A----- -----|GCG- GC-------- ---------- ---------- 1021 --(------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- -----(gcuc aua------- 1141 -----)---- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 ---------- ---------- ---------- ---------- ---------- ---------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- ---------- -)-------- ---------- 1561 ---------- ---------- ---------- ---------- ---------- ---------- 1621 ---------- --G--CCGC| --AA|CUUU- C-U-C|AUAU |UG--C-GGG |AA-A----| 1681 gugc------ ---------- ---------- -|Uc------ ---------- ---------- 1741 ---------- ---------- ---------- ---------- ------aaaU gc|------c 1801 ga-------c AA-GA|C-AC C|-------- ---------- ---------- ---------- 1861 ---|GCG-G- CU-CAU---- -G-UG-(gau aa-------- ---------- ---------- 1921 ---------- -)-CAC--AG --A-G---U- G-C|agca|G G-U-a-g-g- (ugaug---- 1981 ---------- --------)c uc-u-A-AC- U|-------G AG-U|GGU-A AUA-Gc-uc- 2041 uu--u-cg-| -gau------ ------|--- ---------- ---------- --(augu--- 2101 ---)------ ---------- ---------- -|-------- ---------- ---------- 2161 ---------- ---------- ---------- --GCC|-UAA -|UC-CGCA| GCC|-AAg-- 2221 |CUCC----- ------(--- ---------- ---------- ---------- ---------- 2281 ---------- ----)|-|G| UA----|gca cacgccgcg- ---------- ---------- 2341 (u-cg----- ---------- ---------- ---------- ---------- ---------- 2401 -------)-- ---------- ---------- ---------- ---------- -------|-- 2461 cgcgcgc-gu gc-|c|-|-- ---------- GGAA|--AA| GGU|--UCA| CA-GACU-G| 2521 -UAA|GGG-A --A-GG|G|G Ucu------- ---------- -(acgcacac gaaaacaug( 2581 aaaaa)caug aagauuguuu gugcgcgg-- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------) ---------- 2701 ----gGGCU- |UAA-GA-GA |CA-GUC|G| -|GU-----| cc---|cucu gu-------- 2761 ----(-GUGA ---------- )--------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---------- ---------- 2881 --|------- gc--a-g-a- g|-------- --|-uucugg gu-------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- -|uuuuagag gaa|ggcgc- gcca(--cc- 3121 u-aaa----- ---------- ---------- ---------- ---------- ---------- 3181 ---------- ---------- -----)uagg c-cgcc|--- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ---------- ---------- ---------- ---------- ---------- ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- --|-ggaga- g--|------ ---------- -cg---ccca 4021 gag|------ --------|a auca------ ---------- ---------- ---------( 4081 ugugcuaagc ggcauu---- ---------- ---------- ---------- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- --------|- ---------- u-gauu|--- ---------- ---------- 4261 --gguc(gag aaca------ ---------- ---------- )gaaacaaaa ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------| -----ug|U- -||uuc-cgu agguga| // LOCUS Phi.g.1.1 4557 bp RNA RNA 06-JAN-1999 DEFINITION Phialophora gregata f. sp. adzukicola.. ACCESSION No information KEYWORDS No information. SOURCE Phialophora gregata f. sp. adzukicola. ORGANISM Phialophora gregata f. sp. adzukicola. REFERENCE 1 (bases 1 to 3004) AUTHORS Chen,W., Gray,L.E. and Grau,C.R. TITLE differentiating Phialophora gregata f. sp. adzukicola from Phialophora gregata f. sp. sojae Characterization of a group I intron in the nuclear rDNA JOURNAL Unpublished STANDARD No information COMMENTS Sequence information (bases 1 to 4557) Corresponding GenBank entry: AF056487 LOCUS AF056487 680 bp DNA PLN 06-JAN-1999 DEFINITION Phialophora gregata f. sp. adzukicola small subunit ribosomal RNA gene, partial sequence. ACCESSION AF056487 NID g4106739 KEYWORDS . SOURCE Phialophora gregata f. sp. adzukicola. ORGANISM Phialophora gregata f. sp. adzukicola Eukaryota; Fungi; Ascomycota; Euascomycetes; Chaetothyriales; mitosporic Chaetothyriales; Phialophora. REFERENCE 1 (bases 1 to 680) AUTHORS Chen,W., Gray,L.E. and Grau,C.R. TITLE Characterization of a group I intron in the nuclear rDNA differentiating Phialophora gregata f. sp. adzukicola from Phialophora gregata f. sp. sojae JOURNAL Unpublished REFERENCE 2 (bases 1 to 680) AUTHORS Chen,W., Gray,L.E. and Grau,C.R. TITLE Direct Submission JOURNAL Submitted (01-APR-1998) Illinois Natural History Survey, 607 E. Peabody Drive, Champaign, IL 61820 FEATURES Location/Qualifiers source 1..680 /organism="Phialophora gregata f. sp. adzukicola" /strain="ATCC46906" /db_xref="taxon:86000" /db_xref="ATCC:46906" /note="forma specialis=adzukicola" rRNA join(<1..376,661..>680) /product="small subunit ribosomal RNA" intron 377..660 /note="group I" BASE COUNT 181 a 169 c 180 g 150 t BASE COUNT 94 a 82 c 89 g 64 t 4228 others ORIGIN 1 |gucguaaca aggU||uuc- -------(-- --accac--- ---------- ---------- 61 ---------- ---------- ---)------ ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- ---------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 -------|-- --gga|Gacc ----|----- ---------- -a-|UGCA-- ---------- 781 uccc-(cuga --)-g-gga- ---------g gcagcg---- cgacuguaaa uaa------- 841 ---------- ---------- ------cgcu gccgua---- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 -------UGC A|--A----- -----|GUC- AG-------- ---------- ---------- 1021 ---gcu---- ---------- ---------- ---------a ccgcu----- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 ---------- ---------- ---------- ---------- ---------- ---------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- ---------- ---------- ---------- 1561 ---------- ---------- ---------- ---------- ---------- ---------- 1621 ---------- --C--UGGC| --AA|CACG- A-U-C|GAAU |UG--C-GGG |GACC----| 1681 U-CC------ ---------- ---------- -|U------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- --------AA AG-------C 1801 UU-------- CA-CU|C-AC U|-------- ---------- ---------- ---------- 1861 ---|aCC-U- ac-C-C---- -C-C--(gaa a--------- ---------- ---------- 1921 ---------- -)--GGa-GG c-A-G----- ---------- ---------- ---------- 1981 ---------- ---------- ---------- -|-------c -a-c|AGU-u aua-ac-AG- 2041 UG--A-AG-| -Aug------ ------|--- ---------- ---------- --(uua---- 2101 ---)------ ---------- ca-|-----a u|-------- ---------- ---------- 2161 ---------- ---------- ---------- --GGA|-CGA -|UC-CGCA| GCG|-GAG-- 2221 |ACCC----- ------(--- ---------- ---------- ---------- ---------- 2281 ---------- ----)|-|U| AC----|agc ---------- ---------- ---------- 2341 (g-caa---- ---------- ---------- ---------- ---------- ---------- 2401 -------)-- ---------- ---------- ---------- ---------- -------|-- 2461 ---------g cc-|a|c|-- ---------- GGGU|--AG| CGU|--UCA| CA-GACU-A| 2521 -AGU|GAU-U --G-UG|G|G UAgua----- ---------- -(cggua--- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 --uacuaCU- |UAA-GA-UA |UA-GUC|G| -|aa-----| -----|cccu uacu------ 2761 ----(-GAAA ---------- )--------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---------- ---------- 2881 --|------g ug--a-g-g- g|guaa---- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---------- ---------- 3121 ---------- ---------- ---------- ---------- ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ---------- ---------- ---------- ---------- ---------- ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- ---------- 4021 ---------- ---------- ---------- ---------- ---------- ---------- 4081 ---------- ---------- ---------- ---------- ---------- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- ---------- ---------- ---------- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- -----AG|G- -||-uc-cgu agguga| // LOCUS Pro.p.1.2 4557 bp RNA RNA 24-MAY-1996 DEFINITION Protomyces pachydermus.; nuclear small subunit rRNA; group-1 intron RNA. ACCESSION D85142 KEYWORDS nuclear small subunit rRNA; group-1 intron RNA. SOURCE Protomyces pachydermus. ORGANISM Protomyces pachydermus. REFERENCE 1 (bases 1 to 3250) AUTHORS Sugiyama,J. TITLE Direct Submission JOURNAL ) Submitted (10-MAY-1996) to the DDBJ/EMBL/GenBank databases. Junta Sugiyama, The University of Tokyo, The Institute of Molecular and Cellular Biosciences; Yayoi 1-1-1, Bunkyo-ku, Tokyo Japan, 113 (Tel:03-3812-2111(ex.7827), Fax:03-3818-0444 STANDARD No information REFERENCE 2 (sites) AUTHORS Nishida,H., Tajiri,Y. and Sugiyama,J. TITLE Group-I introns in the plant parasitic fungus Protomyces JOURNAL Unpublished (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4557) Corresponding GenBank entry: D85142 BASE COUNT 303 a 255 c 307 g 269 t 3423 others ORIGIN 1 |gucguaaca aggU||uuu- -------(-- --guucucga guaacgagga uggauauuga 61 u-ccuuccgc ggugacacuc aca)------ ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- ---------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 -------|-- --gaa|Gccu u---|----- ---------- ---|UGCA-- ---------- 781 gccuc(gcaa --)gacggu- -------cug gcg------- (cgacaguaa ag-------- 841 --aa------ --------)) ugcc------ ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 ---uggaUGC A|--A----- -----|GCC- AG-------- c--------- ---------- 1021 --(aac---- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 ---------- ---------- ---------- ---------- ---------- ---------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- ---------- -)-------- ---------- 1561 ---------- ---------- ---------- ---------- ---------- ---------- 1621 ---------g --C--UGGC| --AA|CACU- U-U-C|GAAU |UG--C-GGG |GACG----| 1681 U-CC------ ---------- ---------- -|Uu------ ---------- ---------- 1741 ---------- ---------- ---------- ---------- --------AG AG|------C 1801 UCa------- GU-UC|U-AC C|-------- ---------- ---------- ---------- 1861 ---|AAC-C- AG-U-G---- -A-GG-(GAA A--------- ---------- ---------- 1921 ---------- -)-CUU-CUG --C-U-G-G- G-G|----|C C-U-A-U-Gc (uaaug---- 1981 ---------- --------)a CA-U-G--G- G|-------A GA-U|GGU-A AGA-AG-GA- 2041 CU--G-AG-| -Auu------ ------|--- ---------- ---------- ---------- 2101 ---------- ---------- ---------- -|-------- ---------- ---------- 2161 ---------- ---------- ---------- --GGA|-UAA -|UC-CGCA| GCC|-AA--- 2221 |GCC------ ------(--- ---------- ---------- ---------- ---------- 2281 ---------- ----)|-|U| AA----|ggu gu-------- ---------- ---------- 2341 (g-aaa---- ---------- ---------- ---------- ---------- ---------- 2401 -------)-- ---------- ---------- ---------- ---------- -------|-- 2461 ------g-ca cu-|A|U|-- ---------- GGGA|--CA| GGU|--UCA| CA-GACU-A| 2521 -AGU|GGA-A --G-UG|G|G UGgcaugcgc ---------- -(uaag---- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------) -------gcg 2701 ugugcUGCU- |UAA-GG-UA |UA-GUC|G| -|GU-----| -----|cuug gcuga----- 2761 ----(-GAAA ---------- )--------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---------- ---------- 2881 --|-----uc au--c-a-a- g|-------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- )--------- ---------- ---------- 3121 ---------- ---------- ---------- ---------- ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- -----gaguc acugcacaaa cuucauacca 3541 acaacaacca uggcuuccac auguuggaaa ucugaaugcu gcucagcugc ugaguacagu 3601 ccaacagauu cucaacuaga agaguuugcu gaugucaacg aacaucugac ugccgccgaa 3661 guacggaacu uacgaagcaa ccuucagugg ccaggaaagc cagucuucag accguacggc 3721 ggcaccaaag auggagagua cagucaaguc agauucugcg gcaccaagua ugcuguucau 3781 cgaguaaccu augcgcgcua uaaaggcguu ggcuaucuug augauaccau ggaugucucu 3841 caugugucua ucgguggucg aaagacuacc cacaacauca aucccuauca ucuacacacu 3901 gugcgcaaug cucucaacaa gacgcgacac gccugccaca gguuucugga guaucgaugu 3961 cgagagcgcu auuugcggcg aag-uacug- g--c------ -----gagga aac---uaca 4021 ucuc------ ----ugacgc aauu-caaca cugga----- ---------- ---------u 4081 gcgaauggau aauguuacuu gugcuagacg ucauucggag aagcgaugua aggugcauug 4141 gggucucugg caaggagacu augagagguu ugu-ua-cug acggagguga ugggucccuu 4201 gcugcugugu gcuuccgagc agaugaccag c-auguug-- --------ag ccauccagug 4261 cuuuucucga agagucuagc agucagcaug auugaaguuu gaauuagaa- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------| ---------- ---gauuga| -----AC|G- -||uuc-cgu agguga| // LOCUS Pro.m.1.2 4557 bp RNA RNA 24-MAY-1996 DEFINITION Protomyces macrosporus.; nuclear small subunit rRNA; group-1 intron RNA. ACCESSION D85143 KEYWORDS nuclear small subunit rRNA; group-1 intron RNA. SOURCE Protomyces macrosporus. ORGANISM Protomyces macrosporus. REFERENCE 1 (bases 1 to 2514) AUTHORS Sugiyama,J. TITLE Direct Submission JOURNAL Junta Sugiyama, The University of Tokyo, The Institute of Molecular and Cellular Biosciences; Yayoi 1-1-1, Bunkyo-ku, Tokyo Japan, 113 (Tel:03-3812-2111(ex.7827), Fax:03-3818-0444 ) Submitted (10-MAY-1996) to the DDBJ/EMBL/GenBank databases. STANDARD No information REFERENCE 2 (sites) AUTHORS Nishida,H., Tajiri,Y. and Sugiyama,J. TITLE Group-I introns in the plant parasitic fungus Protomyces JOURNAL Unpublished (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4557) Corresponding GenBank entry: D85143 BASE COUNT 104 a 90 c 120 g 91 t 4152 others ORIGIN 1 |gucguaaca aggU||uuu- -------(-- --guucucga guaacgagga uggauuggac 61 ucccuuccgc ggugacacuc aca)------ ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- ---------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 -------|-- --gaa|Gccu u---|----- ---------- ---|UGCA-- ---------- 781 gccuc(gcaa --)ga-ggu- -------cug gcg------- (cgacaguaa ag-------- 841 --aa------ --------)) ugcc------ ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 ---ug-aUGC A|--A----- -----|GUC- AG-------- ---------- ---------- 1021 --(uuc---- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 ---------- ---------- ---------- ---------- ---------- ---------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- ---------- -)-------- ---------- 1561 ---------- ---------- ---------- ---------- ---------- ---------- 1621 ---------g --C--UGGC| --AA|CACU- U-U-C|GAAU |UG--C-GGG |GACG----| 1681 U-CC------ ---------- ---------- -|Ug------ ---------- ---------- 1741 ---------- ---------- ---------- ---------- --------AG AG|------C 1801 UCg------- GU-UC|U-AC C|-------- ---------- ---------- ---------- 1861 ---|AAC-C- AG-C------ -A-GA-(GAA A--------- ---------- ---------- 1921 ---------- -)-UCU--AG --C-C-G-G- G-G|----|C U-G-A-U-Gu (uaaca---- 1981 ---------- --------)g CA-U-C--G- G|-------A G---|GGU-A AGA-AU-GA- 2041 AUC-G-AG-| -Auu------ ------|--- ---------- ---------- ---------- 2101 ---------- ---------- ---------- -|-------- ---------- ---------- 2161 ---------- ---------- ---------- --GGA|-UGA -|UC-CGCA| GCC|-AA--- 2221 |CCCC----- ------(--- ---------- ---------- ---------- ---------- 2281 ---------- ----)|-|U| AA----|ggc ---------- ---------- ---------- 2341 (u-ugc-u-- ---------- ---------- ---------- ---------- ---------- 2401 -------)-- ---------- ---------- ---------- ---------- -------|-- 2461 ---------g cu-|A|U|-- ---------- GGGA|--GA| GGU|--UCA| CA-GACU-A| 2521 -AGU|GGA-A --G-UG|G|G UGguaugc-- ---------- -(ucua---- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------) ---------g 2701 cguacUGCU- |UAA-GA-UA |UA-GUC|G| -|GU-----| -----|cucu gcug------ 2761 ----(-GAAA ---------- )--------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---------- ---------- 2881 --|-----ca gc--g-g-a- g|-------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- )--------- ---------- ---------- 3121 ---------- ---------- ---------- ---------- ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- -------aag ucacugcaca 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ---------- ---------- ---------- ---------- ---------- ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- ---------- 4021 ---------- ---------- ---------- ---------- ---------- ---------- 4081 ---------- ---------- ---------- ---------- ---------- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- ---------- ---------- ---------- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------| ---------- -----ugaa| -----AC|G- -||uuc-cgu agguga| // LOCUS Pne.c.1.1S 4557 bp RNA RNA 28-JAN-191 DEFINITION Pneumocystis carinii. ACCESSION No information KEYWORDS No information. SOURCE Pneumocystis carinii. ORGANISM Pneumocystis carinii. REFERENCE 1 (bases 1 to 2514) AUTHORS Sogin,M.L. and Edman,J.C. TITLE A self-splicing intron in the small subunit rRNA gene of JOURNAL Nucleic Acids Res. 17, 5349-5359 (1989) STANDARD No information COMMENTS Sequence information (bases 1 to 4557) Corresponding GenBank entry: X13687 X12708 BASE COUNT 125 a 70 c 107 g 113 t 4142 others ORIGIN 1 |gucguaaca aggU||uuuu uauug----- --guucuucu gcagugc--- ---------- 61 ---------- ---------- ---)------ ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- ---------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 -----gccaa aggaa|Gccu u---|----- ---------- ---|AGCA-- ---------- 781 gccu-(gaaa --)-g-ggu- ---------g uaucu----c cgcgacuaua aa-------- 841 --uaaaaa-- ---------- -----gggga uuuuaaa--- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 -------UGC U|--A----- -----|GUC- U--------- ---------- ---------- 1021 --(gau---- ---------- ---------- ---------a aaaaa----- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 ---------- ---------- ---------- ---------- ---------- ---------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- ---------- -)-------- ---------- 1561 ---------- ---------- ---------- ---------- ---------- ---------- 1621 ---------- -----AGGC| --GA|CAUU- G-C-C|AAAU |UG--C-GGG |AAGU----| 1681 C-CC------ ---------- ---------- -|U------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- --------AA AG|------A 1801 UU-------- CA-AC|U-AC U|-------- ---------- ---------- ---------- 1861 ---|AAG-C- AG-C-U-u-- -G-UG-(GAA A--------- ---------- ---------- 1921 ---------- -)-CAC--AG --U-U-G-U- G-G|----|C C-G-A-G-UU (-aau----- 1981 ---------- --------)A GC-C-C-UG- G|-------G UA-U|AGU-A ACA-AU-GU- 2041 UG--A-AU-| -A-------- ------|uga cuc------- ---------- --(uu-aau- 2101 --u-)----- -------gag gaa|-----a u|-------- ---------- ---------- 2161 ---------- ---------- ---------- --GGG|-UGA -|UC-CGCA| GCC|-AA--- 2221 |AUCC----- ------(--- ---------- ---------- ---------- ---------- 2281 ---------- ----)|-|U| AA----|gga ca-------- ---------- ---------- 2341 (u-uuu-au- ---------- ---------- ---------- ---------- ---------- 2401 -------)-- ---------- ---------- ---------- ---------- -------|-- 2461 ------u-gu cu-|A|U|-- ---------- GGAU|--GC| AGU|--UCA| CA-GGCC-A| 2521 -GAU|GGC-A --A-UG|G|G UAuccuagug ---------- -(ggauaua- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------) -----uauau 2701 auggaUGCU- |UAA-GA-UA |UG-GUC|G| -|AG-----| -----|cuuc ucuc------ 2761 ----(-GAAA ---------- )--------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---------- ---------- 2881 --|-----ga ga--g-g-a- g|-------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- )--------- ---------- ---------- 3121 ---------- ---------- ---------- ---------- ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ---------- ---------- ---------- ---------- ---------- ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- ---------- 4021 ---------- ---------- ---------- ---------- ---------- ---------- 4081 ---------- ---------- ---------- ---------- ---------- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- ---------- ---------- ---------- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------| ---------- ---guagca| -----CU|G- -||uuc-cgu agguga| // LOCUS Ben.y.1.2 4557 bp RNA RNA 09-APR-1996 DEFINITION Bensingtonia yamatoana.; small subunit ribosomal RNA. ACCESSION D38239 KEYWORDS small subunit ribosomal RNA. SOURCE Bensingtonia yamatoana. ORGANISM Bensingtonia yamatoana. REFERENCE 1 (bases 1 to 2658) AUTHORS Takashima,M. TITLE Direct Submission JOURNAL Research (RIKEN), Japan Collection of Microorganisms; 2-1 Hirosawa, Wako, Saitama 351-01, Japan (E-mail:masako@ulmus .riken.go.jp, Tel: 048-462-1111(ex.5115), Fax:048-462-4617) Submitted (14-SEP-1994) to the DDBJ/EMBL/GenBank databases. Masako Takashima, The Institute of Physical and Chemical STANDARD No information REFERENCE 2 (bases 1 to 2658) AUTHORS Takashima,M., Suh,S. and Nakase,T. TITLE Phylogenetic relationships among the species of the genus Bensingtonia and related taxa based on the small subunit ribosomal DNA sequences JOURNAL J. Gen. Appl. Microbiol. 41, 131-141 (1995) STANDARD No information COMMENTS Organism information Culture collection: JCM 2896 Sequence information (bases 1 to 4557) Corresponding GenBank entry: D38239 Submitted (14-Sep-1994) to DDBJ by: Masako Takashima Japan Collection of Microorganisms The Institute of Physical and Chemical Research (RIKEN) R2-1 Hirosawa, Wako Saitama 351-01 Japan Phone: 048-462-1111 Email: masako@ullmus.riken.go.jp Fax: 048-462-4617. BASE COUNT 136 a 87 c 113 g 132 t 4089 others ORIGIN 1 |~~~guaaca aggU||uuc- -------(-- --cguagaaa guacgaacga auuuaaugau 61 ucuucugcgg uugaaacuua uc-)------ ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- ---------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 -------|-- --gaa|Gccu u---|----- ---------- ---|AGUA-- ---------- 781 gccu-(gaa- --)-a-ggu- ---------g cuuug----- (cgcgacuau aa-------- 841 --acaauga- --------)) cgaagc---- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --uuaaaUGC U|--A----- -----|GUG- AA-------- ga-------- ---------- 1021 --(cag---- ---------- ---------- ---------u guucgcacug aauaa----- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 ---------- ---------- ---------- ---------- ---------- ---------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- ---------- -)-------- ---------- 1561 ---------- ---------- ---------- ---------- ---------- ---------- 1621 --------uc --U--UUGC| --AA|AACC- A-U-C|GAAU |UG--C-GGG |GACG----| 1681 C-CC------ ---------- ---------- -|Uu------ ---------- ---------- 1741 ---------- ---------- ---------- ---------- --------AG AG|------C 1801 UU-------- CA-CG|U-AC G|-------- ---------- ---------- ---------- 1861 ---|GCC-A- AU-C-G---- -U-UC-(GAA A--------- ---------- ---------- 1921 ---------- -)-GGA--UU --G-AUU-U- G-G|ca--|U C-A-G-g-uu (-aau----- 1981 ---------- --------)g gc-C-U-CG- A|-------G UA-U|CGU-A AUA-AC-CG- 2041 UG--A-AG-| -Auu------ ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- --GGG|-UAA -|UC-CGCA| GCC|-AA--- 2221 |GUGC----- ------(--- ---------- ---------- ---------- ---------- 2281 ---------- ----)|-|U| AA----|aca agua------ ---------- ---------- 2341 (u-ugg-uaa acuc------ ---------- ---------- ---------- ---------- 2401 -------)-- ---------- ---------- ---------- ---------- -------|-- 2461 ----uac-uu gc-|A|U|-- ---------- GCUA|--AU| GGU|--UCA| CA-GACU-A| 2521 -AGU|GAU-G --G-UU|G|G GGagau---- ---------- -(gucua--- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 -gucuCUCU- |UAA-GA-UA |UA-GUC|G| -|GG-----| -----|cacc ucgg------ 2761 ----(-GAAA ---------- )--------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---------- ---------- 2881 --|-----cc uu--g-g-u- g|-------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- )--------- ---------- ---------- 3121 ---------- ---------- ---------- ---------- ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- -------gua auucaacugu 3541 gaauaugcuc uaguuucggc uaguucauau caauau---- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ---------- ---------- ---------- ---------- ---------- ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- ---------- 4021 ---------- ---------- ---------- ---------- ---------- ---------- 4081 ---------- ---------- ---------- ---------- ---------- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- ---------- ---------- ---------- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------| ---------- --gagauaa| -----CU|G- -||u~~-~~~ ~~~~~~| // LOCUS Ben.y.2.2 4557 bp RNA RNA 13-JUL-1999 DEFINITION Bensingtonia yamatoana.. ACCESSION No information KEYWORDS No information. SOURCE Bensingtonia yamatoana. ORGANISM Bensingtonia yamatoana. REFERENCE 1 (bases 1 to 2658) AUTHORS Bai,F.Y., Takashima,M. and Nakase,T. TITLE Molecular Phylogenetic Studies on the Bensingtonia Strain Isolated from Yunnan, China JOURNAL Junwu Xitong (1999) In press STANDARD No information COMMENTS Sequence information (bases 1 to 4557) Corresponding GenBank entry: AF101826 LOCUS AF101826 2623 bp DNA PLN 13-JUL-1999 DEFINITION Bensingtonia yamatoana 18S ribosomal RNA gene, partial sequence. ACCESSION AF101826 NID g5453123 VERSION AF101826.1 GI:5453123 KEYWORDS . SOURCE Bensingtonia yamatoana. ORGANISM Bensingtonia yamatoana Eukaryota; Fungi; Basidiomycota; Urediniomycetes; Sporidiobolaceae; mitosporic Sporidiobolaceae; Bensingtonia. REFERENCE 1 (bases 1 to 2623) AUTHORS Bai,F.Y., Takashima,M. and Nakase,T. TITLE Molecular Phylogenetic Studies on the Bensingtonia Strain Isolated from Yunnan, China JOURNAL Junwu Xitong (1999) In press REFERENCE 2 (bases 1 to 2623) AUTHORS Bai,F.Y., Takashima,M. and Nakase,T. TITLE Direct Submission JOURNAL Submitted (27-OCT-1998) Department of Mycology, Institute of Microbiology, Chinese Academy of Sciences, Zhong-Guan-Cun, Beijing 100080, P. R. China FEATURES Location/Qualifiers source 1..2623 /organism="Bensingtonia yamatoana" /strain="AS 2.1973" /db_xref="taxon:4996" /country="China: Yunnan" rRNA <1..>2623 /product="18S ribosomal RNA" BASE COUNT 706 a 526 c 683 g 700 t 8 others BASE COUNT 118 a 79 c 103 g 106 t 4151 others ORIGIN 1 |gucguaaca aggU||uuc- -------(-- --cguagaaa guacgaacga auuuaaugau 61 ucuucugcgg uugaaacuua uc-)------ ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- ---------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 -------|-- --gaa|Gccu u---|----- ---------- ---|AGUA-- ---------- 781 gccu-(gaaa --)-g-ggu- ---------g cuuug----- (cgcgacuau aa-------- 841 --acaauga- ---------) cgaagc---- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 -|uuaaaUGC U|--A----- -----|GUG- AA-------- ga-------- ---------- 1021 --(cag---- ---------- ---------- ---------u guucgcacug aauaa----- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 ---------- ---------- ---------- ---------- ---------- ---------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- ---------- -)-------- ---------- 1561 ---------- ---------- ---------- ---------- ---------- ---------- 1621 --------uc --U--Uwrm| A-AA|mACC- A-U-C|GAAU |Us--C-GGG |GACG----| 1681 s-CC------ ---------- ---------- -|Uu------ ---------- ---------- 1741 ---------- ---------- ---------- ---------- --------AG AG|------C 1801 UU-------- CA-CG|U-AC G|-------- ---------- ---------- ---------- 1861 ---|GCC-A- AU-C-G---- -U-UC-(GAA A--------- ---------- ---------- 1921 ---------- -)-GGA-UUG --A-U-U-C- G-G|ca--|U C-A-G-g-u- (yaaug---- 1981 ---------- --------)- gc-C-U-CG- A|-------G UA-U|CGU-A AUA-AC-CG- 2041 UG--A-AG-| -auu------ ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- --GGG|-UAA -|UC-CGCA| GCC|-AA--- 2221 |GUGC----- ------(--- ---------- ---------- ---------- ---------- 2281 ---------- ----)|-|U| AA----|aca agua------ ---------- ---------- 2341 (u-ugg-uaa acuc------ ---------- ---------- ---------- ---------- 2401 -------)-- ---------- ---------- ---------- ---------- -------|-- 2461 ----uac-uu gc-|A|U|-- ---------- GCUA|--AU| GGU|--UCA| CA-GACU-A| 2521 -AGU|GAU-G --G-UU|G|G GGagau---- ---------- -(gucua--- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 -gucuCCCU- |UAA-GA-wA |UA-GUC|G| -|GG-----| -----|cacc ucgg------ 2761 ----(-GAAA ---------- )--------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---------- ---------- 2881 --|-----cc uu--g-g-u- g|-------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---------- ---------- 3121 ---------- ---------- ---------- ---------- ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- -------g~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~--~~~~~~~ ~~~~~~~~~~ ~~~---~~~~ 4021 ~~~~---~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~----- ---------- ---------~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~---- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 --------~| --~~~~~~~~ ~~~~~~~~~| ~~~~~~~|~- -||~~~-~~~ ~~~~~~| // LOCUS Til.f.1.3 4557 bp RNA RNA 01-APR-1997 DEFINITION Tilletiopsis flava. ACCESSION No information KEYWORDS No information. SOURCE Tilletiopsis flava. ORGANISM Tilletiopsis flava. REFERENCE 1 (bases 1 to 2658) AUTHORS Takashima,M. TITLE Direct Submission JOURNAL Research (RIKEN), Japan Collection of Microorganisms; 2-1 Hirosawa, Wako, Saitama 351-01, Japan (E-mail:masako@ulmus.riken .go.jp, Tel: 048-462-1111(ex.5115), Fax:048-462-4617) Submitted (22-DEC-1995) to the DDBJ/EMBL/GenBank databases. Masako Takashima, The Institute of Physical and Chemical STANDARD No information COMMENTS Organism information Culture collection: JCM 5186 Sequence information (bases 1 to 4557) Corresponding GenBank entry: D82819 LOCUS D82819 2871 bp DNA PLN 01-APR-1997 DEFINITION Tilletiopsis flava 18S rRNA gene, partial sequence. ACCESSION D82819 NID g1905762 KEYWORDS 18S ribosomal RNA. SOURCE Tilletiopsis flava (strain:JCM 5186) DNA. ORGANISM Tilletiopsis flava Eukaryotae; mitochondrial eukaryotes; Fungi; Basidiomycota; Ustilaginomycetes; Ustilaginales; Tilletiaceae; Tilletiopsis. REFERENCE 1 (bases 1 to 2871) AUTHORS Takashima,M. TITLE Direct Submission JOURNAL Submitted (22-DEC-1995) to the DDBJ/EMBL/GenBank databases. Masako Takashima, The Institute of Physical and Chemical Research (RIKEN), Japan Collection of Microorganisms; 2-1 Hirosawa, Wako, Saitama 351-01, Japan (E-mail:masako@ulmus.riken.go.jp, Tel:048-462-1111(ex.5115), Fax:048-462-4617) REFERENCE 2 (bases 1 to 2871) AUTHORS Takashima,M. and Nakase,T. TITLE Three group I introns found Tilletiopsis flava JOURNAL Unpublished (1996) REFERENCE 3 (sites) AUTHORS Takashima,M. and Nakase,T. TITLE A phylogenetic study of the genus Tilletiopsis, Tilletiaria anomala and related taxa based on the small subunit ribosomal DNA sequences JOURNAL J. Gen. Appl. Microbiol. 42, 421-429 (1996) FEATURES Location/Qualifiers source 1..2871 /organism="Tilletiopsis flava" /strain="JCM 5186" /db_xref="taxon:58914" prim_transcript 1..2871 /note="pre-rRNA" rRNA join(<1..556,882..1750,2086..2427,2865..>2871) /product="18S rRNA" intron 557..881 /note="group I intron" /number=1 intron 1751..2085 /note="group I intron" /number=2 intron 2428..2864 /note="group I intron" /number=3 BASE COUNT 732 a 621 c 793 g 725 t BASE COUNT 115 a 101 c 123 g 118 t 4100 others ORIGIN 1 |gucauaaca aggU||uuc- -------(-- --uguagaac aagucgaaga ucaguaauga 61 uuccuucugc agacagcacu ugcu------ ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- ---------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 -------|-- --gaa|Gccu u---|----- ---------- ---|AGCU-- ---------- 781 gc-cc(gaaa --)gg-ugc- ---------g ugccgugacu auaaaaaaug gca------- 841 ---------- ---------- cauugc---- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --uuaaaAGC U|--A----- -----|GUC- au-------- uc-------- ---------- 1021 --(cuc---- ---------- ---------- ---------g ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 ---------- ---------- ---------- ---------- ---------- ---------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- ---------- -)-------- ---------- 1561 ---------- ---------- ---------- ---------- ---------- ---------- 1621 --------ga --a--uGGC| --AA|CACU- G-U-C|AAAU |UG--C-GGG |GAAA----| 1681 C-CC------ ---------- ---------- -|Uu------ ---------- ---------- 1741 ---------- ---------- ---------- ---------- --------AG AG|------C 1801 UC-------- AG-AC|U-AC G|-------- ---------- ---------- ---------- 1861 ---|GCG-G- CC-U-U---- -C-UC-(GAA A--------- ---------- ---------- 1921 ---------- -)-GAG--UU --G-G-UGC- A-G|ca--|G C-A-G-g-u- (uaaug---- 1981 ---------- --------)- gc-C-U-CG- C|-------G GA-U|CGU-A ACA-AC-GU- 2041 CU--G-AG-| -auu------ ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- --GGG|-UAA -|UC-UGCA| GCC|-AAg-- 2221 |cgcuu---- ------(--- ---------- ---------- ---------- ---------- 2281 ---------- ----)|-|C| GU----|cuu gc-------- ---------- ---------- 2341 (c-uag-uu- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ------g-ca agu|A|C|-- ---------a ugcg|-ugc| UGU|--UCA| CA-GGCC-A| 2521 -AAU|GGU-A --G-UG|G|g uggaccc--- ---------- -(uccu---- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ggaucUGCU- |UAA-GA-UA |UG-GUC|G| -|GU-----| c----|ccuc ugc------- 2761 ----(-GAAA ---------- )--------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---------- ---------- 2881 --|------g cg--a-g-g- g--------- ----guugag uugucuguug ugucugac(g 2941 aaa)gucauu ucacgcugaa guauuaa--- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---------- ---------- 3121 ---------- ---------- ---------- ---------- ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ---------- ---------- ---------- ---------- ---------- ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- ---------- 4021 ---------- ---------- ---------- ---------- ---------- ---------- 4081 ---------- ---------- ---------- ---------- ---------- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- ---------- ---------- ---------- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------| -----AC|G- -||uuc-ugu a~~~~~| // LOCUS Ben.c.1.2 4557 bp RNA RNA 09-APR-1996 DEFINITION Bensingtonia ciliata.; small subunit ribosomal RNA. ACCESSION D38233 KEYWORDS small subunit ribosomal RNA. SOURCE Bensingtonia ciliata. ORGANISM Bensingtonia ciliata. REFERENCE 1 (bases 1 to 2427) AUTHORS Takashima,M. TITLE Direct Submission JOURNAL Submitted (14-SEP-1994) to the DDBJ/EMBL/GenBank databases. Masako Takashima, The Institute of Physical and Chemical Research (RIKEN), Japan Collection of Microorganisms; 2-1 Hirosawa, Wako, Saitama 351-01, Japan (E-mail:masako@ulmus .riken.go.jp, Tel: 048-462-1111(ex.5115), Fax:048-462-4617) STANDARD No information REFERENCE 2 (bases 1 to 2427) AUTHORS Takashima,M., Suh,S. and Nakase,T. TITLE Phylogenetic relationships among the species of the genus Bensingtonia and related taxa JOURNAL Unpublished (1994) STANDARD No information REFERENCE 3 (sites) AUTHORS Takashima,M., Suh,S. and Nakase,T. TITLE Phylogenetic relationships among the species of the genus Bensingtonia and related taxa based on the small subunit ribosomal DNA sequences JOURNAL J. Gen. Appl. Microbiol. 41, 131-141 (1995) STANDARD No information COMMENTS Organism information Culture collection: JCM 6865 Sequence information (bases 1 to 4557) Corresponding GenBank entry: D38233 Submitted (14-Sep-1994) to DDBJ by: Masako Takashima Japan Collection of Microorganisms The Institute of Physical and Chemical Research (RIKEN) R2-1 Hirosawa, Wako Saitama 351-01 Japan Phone: 048-462-1111 Email: masako@ullmus.riken.go.jp Fax: 048-462-4617. BASE COUNT 104 a 68 c 83 g 100 t 4202 others ORIGIN 1 |gucguaaca aggU||uuc- -------(-- --cguagaga acaaaugauu cuuucgcuaa 61 ga-cauuugc u--------- ---)------ ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- ---------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 -------|-- --gaa|Gccu u---|----- --------ga ag-|AGCAgu ag-------- 781 ---------- ---------- ---------- ---------- (ucaucc--- ---------- 841 ---------- --------)) ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 ---uuacUGC U|--A----- -----|GUU- CA-------- ac-------- ---------- 1021 --(uua---- ---------- ---------- ---------u u--------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 ---------- ---------- ---------- ---------- ---------- ---------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- ---------- -)-------- ---------- 1561 ---------- ---------- ---------- ---------- ---------- ---------- 1621 --------gu --U--GAGC| --AA|CAUU- G-C-C|AAAU |UG--C-GGG |AAAG----| 1681 U-CU------ ---------- ---------- -|Ua------ ---------- ---------- 1741 ---------- ---------- ---------- ---------- --------AU GA|------C 1801 UU-------- CG-CU|--AC C|-------- ---------- ---------- ---------- 1861 ---|AAG-U- U--C-A---- -A-ua-(Gcg u--------- ---------- ---------- 1921 ---------- -)-acU--CU --G-A-A-U- G-G|----|C C-G-G-c-u- (uaaua---- 1981 ---------- --------)- ca-C-C--G- G|-------G UA-G|GGU-U AUA-AU-GC- 2041 G---A-AG-| -ua------- ------|ug- ---------- ---------- --(uu-a--- 2101 ---)------ ---------- -ca|-----a u|-------- ---------- ---------- 2161 ---------- ---------- ---------- --AGG|-CAA -|CC-UGCA| GCC|-AA--- 2221 |CUUCuac-- ------(auu ---------- ---------- ---------- ---------- 2281 ---------- ----)|-|-| ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- -------|-- -------gua GGAU|--GC| UGU|--UCA| CA-GAUC-A| 2521 -AAU|GGC-A --G-UG|G|G UGcaucau-- ---------- -(guaagcua ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------a 2701 ugaugCGCU- |UAA-GA-UA |UG-AUC|G| -|GU-----| -----|ccuu auugc----- 2761 ----(-GAGA ---------- )--------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---------- ---------- 2881 --|-----gc uu--a-a-g- g|-------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- )--------- ---------- ---------- 3121 ---------- ---------- ---------- ---------- ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ---------- ---------- ---------- ---------- ---------- ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- ---------- 4021 ---------- ---------- ---------- ---------- ---------- ---------- 4081 ---------- ---------- ---------- ---------- ---------- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- ---------- ---------- ---------- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------| ---------- ---uagaaa| -----AC|G- -||u~~-~~~ ~~~~~~| // LOCUS Dac.cy.1.2 4557 bp RNA RNA 23-JUN-1999 DEFINITION Dactylella cylindrospora.. ACCESSION No information KEYWORDS No information. SOURCE Dactylella cylindrospora. ORGANISM Dactylella cylindrospora. REFERENCE 1 (bases 1 to 2427) AUTHORS Scholler,M., Hagedorn,G. and Rubner,A. TITLE A reevaluation of predatory orbiliaceous fungi. II. A new generic concept JOURNAL Sydowia 51, 89-113 (1999) STANDARD No information COMMENTS Sequence information (bases 1 to 4557) Corresponding GenBank entry: AF106538 POS: 1506 LOCUS AF106538 2040 bp DNA PLN 23-JUN-1999 DEFINITION Dactylella cylindrospora 18S small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence. ACCESSION AF106538 NID g5139071 VERSION AF106538.1 GI:5139071 KEYWORDS . SOURCE Dactylella cylindrospora. ORGANISM Dactylella cylindrospora Eukaryota; Fungi; Ascomycota; mitosporic Ascomycota; Dactylella. REFERENCE 1 (bases 1 to 2040) AUTHORS Scholler,M., Hagedorn,G. and Rubner,A. TITLE A reevaluation of predatory orbiliaceous fungi. II. A new generic concept JOURNAL Sydowia 51, 89-113 (1999) REFERENCE 2 (bases 1 to 2040) AUTHORS Hagedorn,G. and Scholler,M. TITLE A reevaluation of predatory orbiliaceous fungi. I. Phylogenetic analysis using rDNA sequence data JOURNAL Sydowia 51, 27-48 (1999) REFERENCE 3 (bases 1 to 2040) AUTHORS Hagedorn,G. and Scholler,M. TITLE Direct Submission JOURNAL Submitted (13-NOV-1998) Institute for Plant Virology, Microbiology, and Biosafety, Federal Biological Research Centre for Agriculture and Forestry, Koenigin-Luise-Str. 19, Berlin 14195, Germany FEATURES Location/Qualifiers source 1..2040 /organism="Dactylella cylindrospora" /strain="CBS 325.70" /note="directly sequenced PCR product, primer NS5-ITS4" /db_xref="taxon:97334" /tissue_type="mycelium" rRNA <1..1459 /product="18S small subunit ribosomal RNA" intron 36..411 intron 1013..1428 misc_RNA 1460..1644 /product="internal transcribed spacer 1" rRNA 1645..1800 /product="5.8S ribosomal RNA" misc_RNA 1801..2007 /product="internal transcribed spacer 2" BASE COUNT 543 a 473 c 541 g 483 t BASE COUNT 122 a 99 c 128 g 92 t 4116 others ORIGIN 1 |gucguaaca aggU||uug- -------(-- --aaguaaga aauccuuccu uugggugacg 61 cuuauga--- ---------- ---)------ ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- ---------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 -------|-- --gaa|Gccu u---|----- ---------- ---|UGUgg- ---------- 781 -cccc(gcaa --)gg-gg-- --------ua uccgccgcga cuauaaagaa ugg|gaagcg 841 gguauuaaa- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 ------UCGC A|--A----- -----|GUC- GG-------- CA-G------ ---------- 1021 --(cca---- ---------- ---------- ---------g cugu------ ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 ---------- ---------- ---------- ---------- ---------- ---------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- ---------- -)-------- ---------- 1561 ---------- ---------- ---------- ---------- ---------- ---------- 1621 ------GCUG --C--UGGC| --CA|CACU- U-U-C|GAAU |UG--C-GGG |AACA----| 1681 C-CC------ ---------- ---------- -|u------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- --------AA AG|------C 1801 AcG------- CC-UC|U-AC C|-------- ---------- ---------- ---------- 1861 ---|AAC-C- G-GcuU---- -G-AA-(GAA A--------- ---------- ---------- 1921 ---------- ----UU--CA --C-CuG-G- G-G|----|C C-A-A-U-Ga (uaacg---- 1981 ---------- --------)a CA-U-U--G- G|-------G UA-A|GGU-A AGA-AU-GA- 2041 GG--UuUG-| -A-------- ------|ug- ---------- ---------- --(agaac-- 2101 ---)------ ---------- -cg------- -|cuaugguu ugaaau---- ---------- 2161 ---------- ---------- ---------- --GGG|-CAA -|UC-CGCA| GCC|-AA--- 2221 |CCC------ ------(--- ---------- ---------- ---------- ---------- 2281 ---------- ----)|c|u| AA----|GGC G--------- ---------- ---------- 2341 (a-guc-c-- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- -------|-- 2461 --------UG CU-|a|u|-- ---------- -GGG|-AGA| GGU|--UCA| CA-GACU-A| 2521 -AGU|GGA-A --G-UG|g|G CUGGA----- ---------- -(-uu----- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 --UCCAGCU- |UAA-GA-UA |UA-GUC|G| -|GG-----| -----|CCuG GCGC------ 2761 ----(-GAAA ---------- )--------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---------- ---------- 2881 --------GC GC--C-c-G- G|-------- --|--gaaa- ggucacagaa aucguaacaa 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---------- ---------- 3121 ---------- ---------- ---------- ---------- ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ---------- ---------- ---------- ---------- ---------- ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- ---------- 4021 ---------- ---------- ---------- ---------- ---------- ---------- 4081 ---------- ---------- ---------- ---------- ---------- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- ---------- ---------- ---------- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -------aa| -----CC|G- -||uuc-cgu agguga| // LOCUS Pro.i.1.2 4557 bp RNA RNA 28-JAN-191 DEFINITION Protomyces inouyei str. IFO6898. ACCESSION No information KEYWORDS No information. SOURCE Protomyces inouyei str. IFO6898. ORGANISM Protomyces inouyei. REFERENCE 1 (bases 1 to 2427) AUTHORS Nishida,H. TITLE 18S rRNA gene of Protomyces inouyei JOURNAL J. Mol. Evol. 37, 25-28 (1993) STANDARD No information COMMENTS Sequence information (bases 1 to 4557) Corresponding GenBank entry: D11377 intron 2077..2469 BASE COUNT 113 a 86 c 118 g 92 t 4148 others ORIGIN 1 |~~~~uaaca aggU||uuu- -------(-- --guucucga guaacgagga uggauauuga 61 u-ccuuccgc ggugacacuc aca)------ ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- ---------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 -------|-- --gaa|Gccu u---|----- ---------- ---|UGCAgc ---------- 781 --cuc(gcaa --)ga-g-uu --------ug gcg------- (cgacaguaa ag-------- 841 --aa------ --------)) ugcc------ ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 ---uggaUGC A|--A----- -----|GUC- AG-------- c--------- ---------- 1021 --(gac---- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 ---------- ---------- ---------- ---------- ---------- ---------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- ---------- -)-------- ---------- 1561 ---------- ---------- ---------- ---------- ---------- ---------- 1621 ---------g --C--UGGC| --AA|CACU- U-U-C|GAAU |UG--C-GGG |GACG----| 1681 U-CC------ ---------- ---------- -|Uu------ ---------- ---------- 1741 ---------- ---------- ---------- ---------- --------AG AG|------C 1801 UCa------- GU-UC|U-AC C|-------- ---------- ---------- ---------- 1861 ---|AAC-C- AG-U-G---- -A-GG-(GAA A--------- ---------- ---------- 1921 ---------- -)-CCU-cCG --C-U-G-G- G-G|----|C C-U-A-U-Gc (uaaaa---- 1981 ---------- --------)a CA-U-G--G- G|-------a ga-U|GGU-A AGA-AG-GA- 2041 ACu-G-AG-| -AUu------ ------|--- ---------- ---------- ---------- 2101 ---------- ---------- ---------- -|-------- ---------- ---------- 2161 ---------- ---------- ---------- --GGA|-UAA -|UC-CGCA| GCC|-AA--- 2221 |gCCC----- ------(--- ---------- ---------- ---------- ---------- 2281 ---------- ----)|-|U| AA----|ggu gu-------- ---------- ---------- 2341 (g-gaa---- ---------- ---------- ---------- ---------- ---------- 2401 -------)-- ---------- ---------- ---------- ---------- -------|-- 2461 ------g-ca cu-|A|U|-- ---------- GGGa|--CA| GGU|--UCA| CA-GACU-A| 2521 -AGU|GGA-A --G-UG|G|G UGgcaugcgu ---------- -(uaag---- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------) -------gcg 2701 ugugcUGCU- |UAA-GA-UA |UA-GUC|G| -|GU-----| -----|cuug cuga------ 2761 ----(-GAAA ---------- )--------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---------- ---------- 2881 --|-----uc au--c-a-a- g|-------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- )--------- ---------- ---------- 3121 ---------- ---------- ---------- ---------- ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- -------aag ucacugcaca 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ---------- ---------- ---------- ---------- ---------- ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- ---------- 4021 ---------- ---------- ---------- ---------- ---------- ---------- 4081 ---------- ---------- ---------- ---------- ---------- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- ---------- ---------- ---------- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------| ---------- ---gauuga| -----AC|G- -||uuc-cgu a~~~~~| // LOCUS Ven.i.1.1 4557 bp RNA RNA 14-AUG-1996 DEFINITION Venturia inaequalis. str. X94; . ACCESSION U63628 KEYWORDS . SOURCE Venturia inaequalis. str. X94. ORGANISM Venturia inaequalis. REFERENCE 1 (bases 1 to 386) AUTHORS Tabrett,A.M. and Barbara,D.J. TITLE Direct Submission JOURNAL Submitted (12-JUL-1996) Plant Pathology, HRI, Wellesbourne, Warwichshire CV35 9EF, UK STANDARD No information COMMENTS Sequence information (bases 1 to 4557) Corresponding GenBank entry: U63628 LOCUS VIU63628 386 bp DNA PLN 14-AUG-1996 DEFINITION Venturia inaequalis ribosomal RNA gene, group I intron. ACCESSION U63628 NID g1488701 KEYWORDS . SOURCE Venturia inaequalis. ORGANISM Venturia inaequalis Eukaryotae; mitochondrial eukaryotes; Fungi; Ascomycota; Euascomycetes; Loculoascomycetes; Dothideales; Venturiaceae; Venturia. REFERENCE 1 (bases 1 to 386) AUTHORS Tabrett,A.M. and Barbara,D.J. TITLE Direct Submission JOURNAL Submitted (12-JUL-1996) Plant Pathology, HRI, Wellesbourne, Warwichshire CV35 9EF, UK FEATURES Location/Qualifiers source 1..386 /organism="Venturia inaequalis" /strain="X94 01-2" /db_xref="taxon:5025" gene 1..386 /gene="ribosomal RNA gene" intron 1..386 /gene="ribosomal RNA gene" /note="group I intron" BASE COUNT 79 a 124 c 128 g 55 t BASE COUNT 79 a 124 c 128 g 55 t 4171 others ORIGIN 1 |~~~~~~~~~ ~~~~||uuc- -------(-- --cgaggaac agugaucccu cugcgagacg 61 cuuacc---- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- ---------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 ---------- --gaa|Gccu u---|----- ---------- ---|UGCAgc ---------- 781 --ccc(gcaa --)gg-gugu gcccgccgcg acuggaaaua augguugggu ca-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 -------UGC A|--G----- -----|GUC- GG-------- cg-cc----- ---------- 1021 --(ccc---- ---------- ---------- ---------g ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 ---------- ---------- ---------- ---------- ---------- ---------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- ---------- -)-------- ---------- 1561 ---------- ---------- ---------- ---------- ---------- ---------- 1621 ------ggcg --c--cggc| --GA|CACU- U-U-C|GAAU |UG--C-GGG |GACG----| 1681 U-CC------ ---------- ---------- -|U------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- cc|------G 1801 UCG------- AC-CC|U-AC C|-------- ---------- ---------- ---------- 1861 ---|AAA-C- CaGG-C---- -C-GG-(ACA A--------- ---------- ---------- 1921 ---------- -)-CCG--GC --CAG-G-U- G-G|----|C C-U-C-U-GC (uagcg---- 1981 ---------- --------)G CA-G-A--G- G|-------G GA-U|GGU-A ACA-AC-GG- 2041 -CUCGACG-| -A-------- ------|--- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- --GGG|-CAA -|UC-CGCA| GCC|-AAc-- 2221 |UCCC----- ------(--- ---------- ---------- ---------- ---------- 2281 ---------- ----)|-|-| ------|-gc cggcc----- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---|-|-|-- ---------- GGGA|-AGG| GGU|--UCA| CA-GACU-A| 2521 -AGU|GGA-A --G-UG-G|G CGgggg---- ---------- -(gcaa---- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 -ccccCGUU- |UAA-GA-UA |UA-GUC|G| -|GG-----| c----|ccuc ugg------- 2761 ----(-GAGA ---------- )--------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---------- ---------- 2881 --|------c ca--g-a-g- g|-------a ac|-ccccg- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- -|-------c ---|guugc- ----(--cgc 3121 c--------- ---------- ---------- ---------- ---------- ---------- 3181 ---------- ---------- -----)---- g-caac|u-- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ---------- ---------- ---------- ---------- ---------- ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- --|------- ---|------ ---------- --------cg 4021 ggg|------ ---------- ---------- ---------- ---------- ---------- 4081 ---------- ---------- ---------- ---------- ---------- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- ---------- ---------- ---------- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------| ---------- --caccaaa| -----CC|G- -||------- ------| // LOCUS Ven.i.2.1 4557 bp RNA RNA 14-AUG-1996 DEFINITION Venturia inaequalis. str. TR50; . ACCESSION U63627 KEYWORDS . SOURCE Venturia inaequalis. str. TR50. ORGANISM Venturia inaequalis. REFERENCE 1 (bases 1 to 387) AUTHORS Tabrett,A.M. and Barbara,D.J. TITLE Direct Submission JOURNAL Submitted (12-JUL-1996) Plant Pathology, HRI, Wellesbourne, Warwichshire CV35 9EF, UK STANDARD No information COMMENTS Sequence information (bases 1 to 4557) Corresponding GenBank entry: U63627 LOCUS VIU63627 387 bp DNA PLN 14-AUG-1996 DEFINITION Venturia inaequalis ribosomal RNA gene, group I intron. ACCESSION U63627 NID g1488700 KEYWORDS . SOURCE Venturia inaequalis. ORGANISM Venturia inaequalis Eukaryotae; mitochondrial eukaryotes; Fungi; Ascomycota; Euascomycetes; Loculoascomycetes; Dothideales; Venturiaceae; Venturia. REFERENCE 1 (bases 1 to 387) AUTHORS Tabrett,A.M. and Barbara,D.J. TITLE Direct Submission JOURNAL Submitted (12-JUL-1996) Plant Pathology, HRI, Wellesbourne, Warwichshire CV35 9EF, UK FEATURES Location/Qualifiers source 1..387 /organism="Venturia inaequalis" /strain="TR50" /db_xref="taxon:5025" gene 1..387 /gene="ribosomal RNA gene" intron 1..387 /gene="ribosomal RNA gene" /note="group I intron" BASE COUNT 79 a 123 c 125 g 59 t 1 others BASE COUNT 79 a 123 c 125 g 59 t 4171 others ORIGIN 1 |~~~~~~~~~ ~~~~||uuc- -------(-- --cgaggaac agugaucccu cugcgagacg 61 cuuacc---- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- ---------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 ---------- --gaa|Gccu u---|----- ---------- ---|UGCAgc ---------- 781 --ccc(gcaa --)gg-gugu gcccgccgcg acuggaaaua augguugggu ca-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 -------UGC A|--G----- -----|GUC- GG-------- cg-cc----- ---------- 1021 --(ccc---- ---------- ---------- ---------g ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 ---------- ---------- ---------- ---------- ---------- ---------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- ---------- -)-------- ---------- 1561 ---------- ---------- ---------- ---------- ---------- ---------- 1621 ------ggcg --c--uggc| --GA|CACU- U-U-C|GAAU |UG--C-GGG |GACG----| 1681 U-CC------ ---------- ---------- -|U------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- cc|------G 1801 UCG------- AC-CC|U-AC C|-------- ---------- ---------- ---------- 1861 ---|AAA-C- CaGG-C---- -C-GG-(ACA A--------- ---------- ---------- 1921 ---------- -)-CCG--GC --CAG-G-U- G-G|----|C C-U-C-U-GC (uagcg---- 1981 ---------- --------)G CA-G-A--G- G|-------G GA-U|GGU-A ACA-AC-GG- 2041 GCUCGACG-| -A-------- ------|--- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- --GGG|-CAA -|UC-CGCA| GCC|-AAcu- 2221 |UUCC----- ------(--- ---------- ---------- ---------- ---------- 2281 ---------- ----)|-|-| ------|-gc cggcc----- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---|-|-|-- ---------- GGGA|-AGG| GGU|--UCA| CA-GACU-A| 2521 -AGU|GGA-A --G-UUuG|G CGgggg---- ---------- -(-caa---- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 -ccccCGCU- |UAA-GA-UA |UA-GUC|G| -|GG-----| c----|ccuc ugg------- 2761 ----(-GAGA ---------- )--------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---------- ---------- 2881 --|------c ca--g-a-g- g|-------a ac|-ccccg- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- -|-------c ---|uugc-- ----(--cgc 3121 c--------- ---------- ---------- ---------- ---------- ---------- 3181 ---------- ---------- -----)---- g-caac|u-- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ---------- ---------- ---------- ---------- ---------- ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- --|------- ---|------ ---------- --------cg 4021 ggn|------ ---------- ---------- ---------- ---------- ---------- 4081 ---------- ---------- ---------- ---------- ---------- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- ---------- ---------- ---------- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------| ---------- --caccaaa| -----CC|G- -||------- ------| // LOCUS Ven.i.3.1 4557 bp RNA RNA 14-AUG-1996 DEFINITION Venturia inaequalis. str. TR141; . ACCESSION U63626 KEYWORDS . SOURCE Venturia inaequalis. str. TR141. ORGANISM Venturia inaequalis. REFERENCE 1 (bases 1 to 385) AUTHORS Tabrett,A.M. and Barbara,D.J. TITLE Direct Submission JOURNAL Warwichshire CV35 9EF, UK Submitted (12-JUL-1996) Plant Pathology, HRI, Wellesbourne, STANDARD No information COMMENTS Sequence information (bases 1 to 4557) Corresponding GenBank entry: U63626 LOCUS VIU63626 385 bp DNA PLN 14-AUG-1996 DEFINITION Venturia inaequalis ribosomal RNA gene, group I intron. ACCESSION U63626 NID g1488699 KEYWORDS . SOURCE Venturia inaequalis. ORGANISM Venturia inaequalis Eukaryotae; mitochondrial eukaryotes; Fungi; Ascomycota; Euascomycetes; Loculoascomycetes; Dothideales; Venturiaceae; Venturia. REFERENCE 1 (bases 1 to 385) AUTHORS Tabrett,A.M. and Barbara,D.J. TITLE Direct Submission JOURNAL Submitted (12-JUL-1996) Plant Pathology, HRI, Wellesbourne, Warwichshire CV35 9EF, UK FEATURES Location/Qualifiers source 1..385 /organism="Venturia inaequalis" /strain="TR141" /db_xref="taxon:5025" gene 1..385 /gene="ribosomal RNA gene" intron 1..385 /gene="ribosomal RNA gene" /note="group I intron" BASE COUNT 80 a 124 c 126 g 55 t BASE COUNT 80 a 124 c 126 g 55 t 4172 others ORIGIN 1 |~~~~~~~~~ ~~~~||uuc- -------(-- --cgaggaac agugaucccu ccgcgagacg 61 cuuacc---- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- ---------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 ---------- --gaa|Gccu u---|----- ---------- ---|UGCAgc ---------- 781 --ccc(guaa --)gg-augu gcccgccgcg acuggaaaua augguugggu ca-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 -------UGC A|--G----- -----|GUC- GG-------- cg-cc----- ---------- 1021 --(ccc---- ---------- ---------- ---------g ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 ---------- ---------- ---------- ---------- ---------- ---------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- ---------- -)-------- ---------- 1561 ---------- ---------- ---------- ---------- ---------- ---------- 1621 ------g--g --c--gcgc| --GA|CACU- U-U-C|GAAU |UG--C-GGG |GACG----| 1681 U-CC------ ---------- ---------- -|U------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- cc|------G 1801 UCG------- AC-CC|U-AC C|-------- ---------- ---------- ---------- 1861 ---|AAA-C- CaGG-C---- -C-GG-(ACA A--------- ---------- ---------- 1921 ---------- -)-CCG--GC --CAG-G-U- G-G|----|C C-U-C-U-GC (uagcg---- 1981 ---------- --------)G CA-G-A--G- G|-------G GA-C|GGU-A ACA-AC-GG- 2041 GCUCGACG-| -A-------- ------|--- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- --GGG|-CAA -|UC-CGCA| GCC|-AAc-- 2221 |UCCC----- ------(--- ---------- ---------- ---------- ---------- 2281 ---------- ----)|-|-| ------|-gc cggcc----- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---|-|-|-- ---------- GGGA|-AGG| GGU|--UCA| CA-GACU-A| 2521 -AGU|GGA-A --G-UG-G|G CGgggg---- ---------- -(gcaa---- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 -ccccCGUU- |UAA-GA-UA |UA-GUC|G| -|GG-----| c----|ccuc ugg------- 2761 ----(-GAGA ---------- )--------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---------- ---------- 2881 --|------c ca--g-a-g- g|-------a ac|-ccccg- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- -|-------c ---|guugc- ----(--cuc 3121 c--------- ---------- ---------- ---------- ---------- ---------- 3181 ---------- ---------- -----)---- g-caac|u-- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ---------- ---------- ---------- ---------- ---------- ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- --|------- ---|------ ---------- --------cg 4021 ggg|------ ---------- ---------- ---------- ---------- ---------- 4081 ---------- ---------- ---------- ---------- ---------- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- ---------- ---------- ---------- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------| ---------- --caccaaa| -----CC|G- -||------- ------| // LOCUS Ven.i.4.1 4557 bp RNA RNA 14-AUG-1996 DEFINITION Venturia inaequalis. str. RACE 4. ACCESSION No information KEYWORDS No information. SOURCE Venturia inaequalis. str. RACE 4. ORGANISM Venturia inaequalis. REFERENCE 1 (bases 1 to 385) AUTHORS Tabrett,A.M. and Barbara,D.J. TITLE Direct Submission JOURNAL Warwichshire CV35 9EF, UK Submitted (12-JUL-1996) Plant Pathology, HRI, Wellesbourne, STANDARD No information COMMENTS Sequence information (bases 1 to 4557) Corresponding GenBank entry: U63625 LOCUS VIU63625 387 bp DNA PLN 14-AUG-1996 DEFINITION Venturia inaequalis ribosomal RNA gene, group I intron. ACCESSION U63625 NID g1488698 KEYWORDS . SOURCE Venturia inaequalis. ORGANISM Venturia inaequalis Eukaryotae; mitochondrial eukaryotes; Fungi; Ascomycota; Euascomycetes; Loculoascomycetes; Dothideales; Venturiaceae; Venturia. REFERENCE 1 (bases 1 to 387) AUTHORS Tabrett,A.M. and Barbara,D.J. TITLE Direct Submission JOURNAL Submitted (12-JUL-1996) Plant Pathology, HRI, Wellesbourne, Warwichshire CV35 9EF, UK FEATURES Location/Qualifiers source 1..387 /organism="Venturia inaequalis" /strain="RACE 4" /db_xref="taxon:5025" gene 1..387 /gene="ribosomal RNA gene" intron 1..387 /gene="ribosomal RNA gene" /note="group I intron" BASE COUNT 80 a 124 c 128 g 54 t 1 others BASE COUNT 80 a 124 c 128 g 54 t 4171 others ORIGIN 1 |~~~~~~~~~ ~~~~||uuc- -------(-- --cgaggaac agugaucccu cugcgagacg 61 nuuacc---- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- ---------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 ---------- --gaa|Gccu u---|----- ---------- ---|UGCAgc ---------- 781 --ccc(gcaa --)gg-gugu gcccgccgcg acuggaaaua augguugggu ca-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 -------UGC A|--G----- -----|GUC- GG-------- cg-cc----- ---------- 1021 --(ccc---- ---------- ---------- ---------g ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 ---------- ---------- ---------- ---------- ---------- ---------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- ---------- -)-------- ---------- 1561 ---------- ---------- ---------- ---------- ---------- ---------- 1621 ------ggcg --c--cgac| --GA|CACU- U-U-C|GAAU |UG--C-GGG |GACG----| 1681 U-CC------ ---------- ---------- -|U------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- cc|------G 1801 UCG------- AC-CC|U-AC C|-------- ---------- ---------- ---------- 1861 ---|AAA-C- CaGG-C---- -C-GG-(ACA A--------- ---------- ---------- 1921 ---------- -)-CCG--GC --CAG-G-U- G-G|----|C C-U-C-U-GC (uagcg---- 1981 ---------- --------)G CA-G-A--G- G|-------G GA-U|GGU-A ACA-AC-GG- 2041 GCUCGACG-| -A-------- ------|--- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- --GGG|-CAA -|UC-CGCA| GCC|-AAc-- 2221 |UCCC----- ------(--- ---------- ---------- ---------- ---------- 2281 ---------- ----)|-|-| ------|-gc cggcc----- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---|-|-|-- ---------- GGGA|-AGG| GGU|--UCA| CA-GACU-A| 2521 -AGU|GGA-A --G-UG-G|G CGgggg---- ---------- -(gcaa---- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 -ccccCGCU- |UAA-GA-UA |UA-GUC|G| -|GG-----| c----|ccuc ugg------- 2761 ----(-GAGA ---------- )--------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---------- ---------- 2881 --|------c ca--g-a-g- g|-------a ac|-ccccg- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- -|-------c ---|guugc- ----(--cgc 3121 c--------- ---------- ---------- ---------- ---------- ---------- 3181 ---------- ---------- -----)---- g-caac|u-- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ---------- ---------- ---------- ---------- ---------- ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- --|------- ---|------ ---------- --------cg 4021 ggg|------ ---------- ---------- ---------- ---------- ---------- 4081 ---------- ---------- ---------- ---------- ---------- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- ---------- ---------- ---------- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------| ---------- --caccaaa| -----CC|G- -||------- ------| // LOCUS Ven.i.5.1 4557 bp RNA RNA 14-AUG-1996 DEFINITION Venturia inaequalis. str. D94; . ACCESSION U63624 KEYWORDS . SOURCE Venturia inaequalis. str. D94. ORGANISM Venturia inaequalis. REFERENCE 1 (bases 1 to 386) AUTHORS Tabrett,A.M. and Barbara,D.J. TITLE Direct Submission JOURNAL Warwichshire CV35 9EF, UK Submitted (12-JUL-1996) Plant Pathology, HRI, Wellesbourne, STANDARD No information COMMENTS Sequence information (bases 1 to 4557) Corresponding GenBank entry: U63624 LOCUS VIU63624 386 bp DNA PLN 14-AUG-1996 DEFINITION Venturia inaequalis ribosomal RNA gene, group I intron. ACCESSION U63624 NID g1488697 KEYWORDS . SOURCE Venturia inaequalis. ORGANISM Venturia inaequalis Eukaryotae; mitochondrial eukaryotes; Fungi; Ascomycota; Euascomycetes; Loculoascomycetes; Dothideales; Venturiaceae; Venturia. REFERENCE 1 (bases 1 to 386) AUTHORS Tabrett,A.M. and Barbara,D.J. TITLE Direct Submission JOURNAL Submitted (12-JUL-1996) Plant Pathology, HRI, Wellesbourne, Warwichshire CV35 9EF, UK FEATURES Location/Qualifiers source 1..386 /organism="Venturia inaequalis" /strain="D94 07-1" /db_xref="taxon:5025" gene 1..386 /gene="ribosomal RNA gene" intron 1..386 /gene="ribosomal RNA gene" /no BASE COUNT 78 a 123 c 130 g 55 t 4171 others ORIGIN 1 |~~~~~~~~~ ~~~~||uuc- -------(-- --cgaggaac agugaucccu ccgcgagacg 61 cuuacc---- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- ---------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 ---------- --gaa|Gccu u---|----- ---------- ---|UGCAgc ---------- 781 --ccc(guaa --)gg-gugu gcccgccgcg acuggaaaua augguugggu ca-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 -------UGC A|--G----- -----|GUC- GG-------- cg-cc----- ---------- 1021 --(ccc---- ---------- ---------- ---------g ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 ---------- ---------- ---------- ---------- ---------- ---------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- ---------- -)-------- ---------- 1561 ---------- ---------- ---------- ---------- ---------- ---------- 1621 ------gg-c --g--cggc| --GA|CACU- U-U-C|GAAU |UG--C-GGG |GACG----| 1681 U-CC------ ---------- ---------- -|U------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- cc|------G 1801 UCG------- AC-CC|U-AC C|-------- ---------- ---------- ---------- 1861 ---|AAA-C- CaGG-C---- -C-GG-(ACA A--------- ---------- ---------- 1921 ---------- -)-CCG--GC --CAG-G-U- G-G|----|C C-U-C-U-GC (uagcg---- 1981 ---------- --------)G CA-G-A--G- G|-------G GA-U|GGU-A ACA-AC-GG- 2041 GCUCGACG-| -A-------- ------|--- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- --GGG|-CAA -|UC-CGCA| GCC|-AAc-- 2221 |UCCC----- ------(--- ---------- ---------- ---------- ---------- 2281 ---------- ----)|-|-| ------|-gc cggcc----- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---|-|-|-- ---------- GGGA|-AGG| GGU|--UCA| CA-GACU-A| 2521 -AGU|GGA-A --G-UG-G|G CGgggg---- ---------- -(gcaa---- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 -ccccCGUU- |UAA-GA-UA |UA-GUC|G| -|GG-----| c----|ccuc ugg------- 2761 ----(-GAGA ---------- )--------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---------- ---------- 2881 --|------c cg--g-a-g- g|-------a ac|-ccccg- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- -|-------c ---|guugc- ----(--cgc 3121 c--------- ---------- ---------- ---------- ---------- ---------- 3181 ---------- ---------- -----)---- g-caac|u-- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ---------- ---------- ---------- ---------- ---------- ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- --|------- ---|------ ---------- --------cg 4021 ggg|------ ---------- ---------- ---------- ---------- ---------- 4081 ---------- ---------- ---------- ---------- ---------- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- ---------- ---------- ---------- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------| ---------- --caccaaa| -----CC|G- -||------- ------| // LOCUS Ven.i.6.1 4557 bp RNA RNA 06-JAN-1999 DEFINITION Venturia inaequalis. str. 685BF 18S ribosomal RNA and 5.8S ribosomal RNA genes, partial sequence. ACCESSION No information KEYWORDS No information. SOURCE Venturia inaequalis. str. 685BF 18S ribosomal RNA and 5.8S ribosomal RNA genes, partial sequence. ORGANISM Venturia inaequalis. REFERENCE 1 (bases 1 to 386) AUTHORS Schnabel,G., Schnabel,E.L. and Jones,A.L. TITLE and its phylogenetic relationship to rDNA from other tree-fruit Venturia species Characterization of ribosomal DNA from Venturia inaequalis JOURNAL Phytopathology 89 (1), 100-108 (1999) STANDARD No information COMMENTS Sequence information (bases 1 to 4557) Corresponding GenBank entry: AF065831 LOCUS AF065831 660 bp DNA PLN 06-JAN-1999 DEFINITION Venturia inaequalis strain 685BF 18S ribosomal RNA and 5.8S ribosomal RNA genes, partial sequence. ACCESSION AF065831 NID g4106758 KEYWORDS . SOURCE Venturia inaequalis. ORGANISM Venturia inaequalis Eukaryota; Fungi; Ascomycota; Euascomycetes; Loculoascomycetes; Dothideales; Venturiaceae; Venturia. REFERENCE 1 (bases 1 to 660) AUTHORS Schnabel,G., Schnabel,E.L. and Jones,A.L. TITLE Characterization of ribosomal DNA from Venturia inaequalis and its phylogenetic relationship to rDNA from other tree-fruit Venturia species JOURNAL Phytopathology 89 (1), 100-108 (1999) REFERENCE 2 (bases 1 to 660) AUTHORS Schnabel,G. and Jones,A.L. TITLE Direct Submission JOURNAL Submitted (18-MAY-1998) Botany and Plant Pathology, Michigan State University, 103 Pesticide Research Center, East Lansing, MI 48824-1312, USA FEATURES Location/Qualifiers source 1..660 /organism="Venturia inaequalis" /strain="685BF" /db_xref="taxon:5025" rRNA join(<1..37,426..456) /product="18S ribosomal RNA" intron 38..425 /note="group I" misc_RNA 457..610 /product="internal transcribed spacer" rRNA 611..>660 /product="5.8S ribosomal RNA" BASE COUNT 149 a 200 c 196 g 112 t 3 others BASE COUNT 85 a 129 c 134 g 62 t 4147 others ORIGIN 1 |gucguaaca aggU||uuc- -------(-- --cgangaac agugaucccu cugcgagacg 61 cuuacc---- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- ---------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 ---------- --gaa|Gccu u---|----- ---------- ---|UGCAgc ---------- 781 --ccc(gcaa --)gg-ggug ugcccgccgc gacuggaaau aaugguuggg uca------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 -------UGC A|--G----- -----|GUC- GG-------- cg-cc----- ---------- 1021 --(ccc---- ---------- ---------- ---------g ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 ---------- ---------- ---------- ---------- ---------- ---------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- ---------- -)-------- ---------- 1561 ---------- ---------- ---------- ---------- ---------- ---------- 1621 ------ggcg --c--cggc| --GA|CACU- U-U-C|GAAU |UG--C-GGG |GACG----| 1681 U-CC------ ---------- ---------- -|U------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- cc|------G 1801 UCG------- AC-CC|U-AC C|-------- ---------- ---------- ---------- 1861 ---|AAA-C- CaGG-C---- -C-GG-(ACA A--------- ---------- ---------- 1921 ---------- -)-CCG--GC --CAU-G-U- G-G|----|C C-U-C-U-GC (uancg---- 1981 ---------- --------)G CA-G-A--N- G|-------G GA-U|GGU-A ACA-AC-GG- 2041 GCUCGACG-| -A-------- ------|--- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- --GGG|-CAA -|UC-CGCA| GCC|-AAc-- 2221 |UCCC----- ------(--- ---------- ---------- ---------- ---------- 2281 ---------- ----)|-|-| ------|-gc cggcc----- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---|-|-|-- ---------- GGGA|-AGG| GGU|--UCA| CA-GACU-A| 2521 -AGU|GGA-A --G-UG-G|G CGgggg---- ---------- -(gcaa---- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 -ccccCGCU- |UAA-GA-UA |UA-GUC|G| -|GG-----| c----|ccuc ugg------- 2761 ----(-GAGA ---------- )--------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---------- ---------- 2881 --|------c ca--g-a-g- g|-------a ac|-ccccg- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- -|-------c ---|guugc- ----(--cgc 3121 c--------- ---------- ---------- ---------- ---------- ---------- 3181 ---------- ---------- -----)---- g-caac|u-- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ---------- ---------- ---------- ---------- ---------- ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- --|------- ---|------ ---------- --------cg 4021 ggg|------ ---------- ---------- ---------- ---------- ---------- 4081 ---------- ---------- ---------- ---------- ---------- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- ---------- ---------- ---------- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------| ---------- --caccaaa| -----CC|G- -||uuc-cgu agguga| // LOCUS Pez.c.2.1 4557 bp RNA RNA 30-NOV-1999 DEFINITION Pezicula cinnamomea. str. CBS236.97 18S ribosomal RNA gene, partial sequence; . ACCESSION AF141185 KEYWORDS . SOURCE Pezicula cinnamomea. str. CBS236.97 18S ribosomal RNA gene, partial sequence. ORGANISM Pezicula cinnamomea. REFERENCE 1 (bases 1 to 1223) AUTHORS Abeln,E.C.A., Pagter,M.A. de and Verkley,G.J.M. TITLE Direct Submission JOURNAL P.O. box 273, Baarn 3740 AG, The Netherlands Submitted (07-APR-1999) Centraal Bureau voor Schimmelcultures, STANDARD No information COMMENTS Sequence information (bases 1 to 4557) Corresponding GenBank entry: AF141185 -------------------------- LOCUS AF141185 1223 bp DNA PLN 30-NOV-1999 DEFINITION Pezicula cinnamomea strain CBS236.97 18S ribosomal RNA gene, partial sequence; 5.8S ribosomal RNA gene, complete sequence; and 28S ribosomal RNA gene, partial sequence. ACCESSION AF141185 NID g6478346 VERSION AF141185.1 GI:6478346 KEYWORDS . SOURCE Pezicula cinnamomea. ORGANISM Pezicula cinnamomea Eukaryota; Fungi; Ascomycota; Leotiales; Dermateaceae; Pezicula. REFERENCE 1 (bases 1 to 1223) AUTHORS Abeln,E.C.A., Pagter,M.A. de and Verkley,G.J.M. TITLE Direct Submission JOURNAL Submitted (07-APR-1999) Centraal Bureau voor Schimmelcultures, P.O. box 273, Baarn 3740 AG, The Netherlands FEATURES Location/Qualifiers source 1..1223 /organism="Pezicula cinnamomea" /strain="CBS236.97" /db_xref="taxon:108560" rRNA join(<1..298,672..699) /product="18S ribosomal RNA" intron 298..671 /note="group I intron" BASE COUNT 293 a 312 c 336 g 282 t BASE COUNT 108 a 98 c 122 g 74 t 4155 others ORIGIN 1 |~~~~~~aca aggU||cucc -------(-- ---guagagc agugaucucu cugcagcgaa 61 cuuaa----- ---------- --)------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- ---------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 -------|-- -ggaa|Gccu u---|----- ---------- ---|UGCA-- ---------- 781 -cccc(uaac g-)gg-gg-- --cucu-cgc gacu--cuaa auaagg--ag gca------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 -------UGC A|--A----- -----|GUG- AC------aa ag-cc----- ---------- 1021 --(caa---- ---------- ---------- ---------c ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 ---------- ---------- ---------- ---------- ---------- ---------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- ---------- -)-------- ---------- 1561 ---------- ---------- ---------- ---------- ---------- ---------- 1621 -----ggcug a-G--UUGC| --AA|CACA- A-U-C|GAAU |UG--C-GGG |GAAG----| 1681 U-CC------ ---------- ---------- -|U------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- --------AA AG|------C 1801 CUC------- aG-GG|U-AC U|-------- ---------- ---------- ---------- 1861 ---|AAC-C- U-GC-U---- -G-UA-(GGA A--------- ---------- ---------- 1921 ---------- -)-UGC--AG --C-A-G-G- G-G|----|C C-U-G-U-GU (uaauc---- 1981 ---------- --------)G CA-C-A--G- G|-------G UA-U|AGU-A ACA-AC-CC- 2041 CgG-A-GG-| -A-------- ------|ucu agc------- ---------- ---caggugu 2101 ---------- ---g-cuaga ---------a u--------- ---------- ---------- 2161 ---------- ---------- ---------- --GGA|-CGA -|UC-CGCA| GCG|-AAG-- 2221 |CCCC----- ------(--- ---------- ---------- ---------- ---------- 2281 ---------- ----)|-|u| AG----|acc a--------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---|-|-|-- ---------- GGGG|--AA| CGU|--UCA| CA-GACU-A| 2521 -AGU|GGU-U --G-UG|g|G UAGGAG---- ---------- -(gga----- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 -CUCCUGCU- |UAA-GA-UA |UA-GUC|G| -|GG-----| -----|ccgg cgcg------ 2761 ----(-GAAA ---------- )--------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---------- ---------- 2881 --|-----cg cg--c-u-g- g|-------- --|-ggauuc gcaaga---- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---------- ---------- 3121 ---------- ---------- ---------- ---------- ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ---------- ---------- ---------- ---------- ---------- ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- ---------- 4021 ---------- ---------- ---------- ---------- ---------- ---------- 4081 ---------- ---------- ---------- ---------- ---------- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- ---------- ---------- ---------- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------| ---------- --acguaaa| -----CC|G- -||cuc-c-u agguga| // LOCUS Pez.c.1.1 4557 bp RNA RNA 30-NOV-1999 DEFINITION Pezicula cinnamomea. str. CBS290.39 18S ribosomal RNA gene, partial sequence; . ACCESSION AF141184 KEYWORDS . SOURCE Pezicula cinnamomea. str. CBS290.39 18S ribosomal RNA gene, partial sequence. ORGANISM Pezicula cinnamomea. REFERENCE 1 (bases 1 to 1200) AUTHORS Abeln,E.C.A., Pagter,M.A. de and Verkley,G.J.M. TITLE Direct Submission JOURNAL Submitted (07-APR-1999) Centraal Bureau voor Schimmelcultures, P.O. box 273, Baarn 3740 AG, The Netherlands STANDARD No information COMMENTS Sequence information (bases 1 to 4557) Corresponding GenBank entry: AF141184 -------------------------- LOCUS AF141184 1200 bp DNA PLN 30-NOV-1999 DEFINITION Pezicula cinnamomea strain CBS290.39 18S ribosomal RNA gene, partial sequence; 5.8S ribosomal RNA gene, complete sequence; and 28S ribosomal RNA gene, partial sequence. ACCESSION AF141184 NID g6478345 VERSION AF141184.1 GI:6478345 KEYWORDS . SOURCE Pezicula cinnamomea. ORGANISM Pezicula cinnamomea Eukaryota; Fungi; Ascomycota; Leotiales; Dermateaceae; Pezicula. REFERENCE 1 (bases 1 to 1200) AUTHORS Abeln,E.C.A., Pagter,M.A. de and Verkley,G.J.M. TITLE Direct Submission JOURNAL Submitted (07-APR-1999) Centraal Bureau voor Schimmelcultures, P.O. box 273, Baarn 3740 AG, The Netherlands FEATURES Location/Qualifiers source 1..1200 /organism="Pezicula cinnamomea" /strain="CBS290.39" /db_xref="taxon:108560" rRNA join(<1..301,686..713) /product="18S ribosomal RNA" intron 302..685 /note="group I intron" BASE COUNT 284 a 311 c 334 g 271 t BASE COUNT 109 a 99 c 124 g 76 t 4149 others ORIGIN 1 |gucguaaca aggU||cucc -------(-- ---guagagc agugaucucu cugcagcgaa 61 cuuaa----- ---------- --)------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- ---------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 -------|-- -ggaa|Gccu u---|----- ---------- ---|UGCA-- ---------- 781 -cccc(uaac g-)gg-gg-- --cucu-cgc gacu--cuaa auaagg--ag gca------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 -------UGC A|--A----- -----|GUG- AC------aa ag-cc----- ---------- 1021 --(caa---- ---------- ---------- ---------c ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 ---------- ---------- ---------- ---------- ---------- ---------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- ---------- -)-------- ---------- 1561 ---------- ---------- ---------- ---------- ---------- ---------- 1621 -----ggcug a-g--uugc| --AA|CACA- A-U-C|GAAU |UG--C-GGG |GAAG----| 1681 U-CC------ ---------- ---------- -|U------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- --------AA AG|------C 1801 CUC------- aG-GG|U-AC U|-------- ---------- ---------- ---------- 1861 ---|AAC-C- U-GC-U---- -G-UA-(GGA A--------- ---------- ---------- 1921 ---------- -)-UGC--AG --C-A-G-G- G-G|----|C C-U-G-U-GU (uaauc---- 1981 ---------- --------)G CA-C-A--G- G|-------G UA-U|AGU-A ACA-Ac-CC- 2041 CgG-A-GG-| -A-------- ------|ucu agc------- ---------- ---caggugu 2101 ---------- ---g-cuaga ---------a u--------- ---------- ---------- 2161 ---------- ---------- ---------- --GGA|-CGA -|UC-CGCA| GCG|-AAG-- 2221 |CCCC----- ------(--- ---------- ---------- ---------- ---------- 2281 ---------- ----)|-|u| AG----|acc a--------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---|-|-|-- ---------- GGGG|--AA| CGU|--UCA| CA-GACU-A| 2521 -AGU|GGU-U --G-UG|G|G UAGGAG---- ---------- -(gga----- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 -CUCCUGCU- |UAA-GA-UA |UA-GUC|G| -|GG-----| -----|ccgg cgcg------ 2761 ----(-GAAA ---------- )--------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---------- ---------- 2881 --|-----cg cg--c-u-g- g|-------- --|-ggauuc gcaaga---- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---------- ---------- 3121 ---------- ---------- ---------- ---------- ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ---------- ---------- ---------- ---------- ---------- ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- ---------- 4021 ---------- ---------- ---------- ---------- ---------- ---------- 4081 ---------- ---------- ---------- ---------- ---------- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- ---------- ---------- ---------- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------| ---------- --acguaaa| -----CC|G- -||cuc-c-u agguga| // LOCUS Mon.l.1.1 4557 bp RNA RNA 23-JUN-1999 DEFINITION Monacrosporium leptosporum.. ACCESSION No information KEYWORDS No information. SOURCE Monacrosporium leptosporum. ORGANISM Monacrosporium leptosporum. REFERENCE 1 (bases 1 to 1200) AUTHORS Scholler,M., Hagedorn,G. and Rubner,A. TITLE A reevaluation of predatory orbiliaceous fungi. II. A new generic concept JOURNAL Sydowia 51, 89-113 (1999) STANDARD No information COMMENTS Sequence information (bases 1 to 4557) Corresponding GenBank entry: AF106529 LOCUS AF106529 1605 bp DNA PLN 23-JUN-1999 DEFINITION Monacrosporium leptosporum 18S small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence. ACCESSION AF106529 NID g5139062 VERSION AF106529.1 GI:5139062 KEYWORDS . SOURCE Monacrosporium leptosporum. ORGANISM Monacrosporium leptosporum Eukaryota; Fungi; Ascomycota; mitosporic Ascomycota; Monacrosporium. REFERENCE 1 (bases 1 to 1605) AUTHORS Scholler,M., Hagedorn,G. and Rubner,A. TITLE A reevaluation of predatory orbiliaceous fungi. II. A new generic concept JOURNAL Sydowia 51, 89-113 (1999) REFERENCE 2 (bases 1 to 1605) AUTHORS Hagedorn,G. and Scholler,M. TITLE A reevaluation of predatory orbiliaceous fungi. I. Phylogenetic analysis using rDNA sequence data JOURNAL Sydowia 51, 27-48 (1999) REFERENCE 3 (bases 1 to 1605) AUTHORS Hagedorn,G. and Scholler,M. TITLE Direct Submission JOURNAL Submitted (13-NOV-1998) Institute for Plant Virology, Microbiology, and Biosafety, Federal Biological Research Centre for Agriculture and Forestry, Koenigin-Luise-Str. 19, Berlin 14195, Germany FEATURES Location/Qualifiers source 1..1605 /organism="Monacrosporium leptosporum" /strain="CBS 560.92" /note="directly sequenced PCR product, primer NS5-ITS4" /db_xref="taxon:97337" /tissue_type="mycelium" rRNA <1..1045 /product="18S small subunit ribosomal RNA" intron 630..1014 misc_RNA 1046..1223 /product="internal transcribed spacer 1" rRNA 1224..1379 /product="5.8S ribosomal RNA" misc_RNA 1380..1573 /product="internal transcribed spacer 2" BASE COUNT 428 a 391 c 417 g 369 t BASE COUNT 109 a 99 c 119 g 83 t 4147 others ORIGIN 1 |gucguaaca aggU||uu-- -------(-- ---gaag-ua ugacccuucu guggu-gaca 61 cuuacgag-- ---------- --)------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- ---------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 ---------- ---aa|Gccu u---|----- ---------- ---|UGCgg- ---------- 781 -cccc(gcaa --)gg-ggu- a-ccggccgc gacuauaaau -----gaaag ---------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------GC A|--A----- -----|GCC- GG-------- Ca-------- ---------- 1021 --(uua---- ---------- ---------- ---------a aucgcaaguc agcuca---- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 ---------- ---------- ---------- ---------- ---------- ---------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- ---------- -)-------- ---------- 1561 ---------- ---------- ---------- ---------- ---------- ---------- 1621 ---------G --C--UGGC| --UA|CACU- U-U-C|GAAU |UG--C-GGG |AAAC----| 1681 C-CC------ ---------- ---------- -|U------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- --------AA AG|------C 1801 Cga------- CC-UC|U-AC C|-------- ---------- ---------- ---------- 1861 ---|AAC-U- G-UU-C---- -A-GG-(GAA A--------- ---------- ---------- 1921 ---------- -)-CC---UG --GAU-G-G- G-G|----|C C-U-G-U-Gc (uaaca---- 1981 ---------- --------)u CA-C-A--G- G|-------G UA-C|GGU-A ACA-AU-GA- 2041 GG--A-GG-| -A-------- ------|-u- ---------- ---------- ---------- 2101 ---------- ---------- -au|-----a u|-------- ---------- ---------- 2161 ---------- ---------- ---------- --GGG|-CAA -|UC-CGCA| GCC|-AAg-- 2221 |UCCC----- ------(--- ---------- ---------- ---------- ---------- 2281 ---------- ----)|-|u| AA----|ggc u--------- ---------- ---------- 2341 (c-ucg---- ---------- ---------- ---------- ---------- ---------- 2401 -------)-- ---------- ---------- ---------- ---------- -------|-- 2461 --------ag cu-|A|U|-- ---------- GGGA|--AA| GGU|--UCA| CA-GACU-A| 2521 -AGU|GGA-A --G-UG|G|G UUGGGgcgg- ---------- -(uuguaau- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- --------cc 2701 gcCCCGGCU- |UAA-GA-UA |UA-GUC|G| -|GG-----| -----|cugu ccgc------ 2761 ----(-GAGA ---------- )--------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---------- ---------- 2881 --|-----gc ag--a-c-a- g|-------- --|------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---------- ---------- 3121 ---------- ---------- ---------- ---------- ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ---------- ---------- ---------- ---------- ---------- ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- ---------- 4021 ---------- ---------- ---------- ---------- ---------- ---------- 4081 ---------- ---------- ---------- ---------- ---------- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- ---------- ---------- ---------- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------| ---gauguca caaauc-aa| -----CC|G- -||uuc-cgu agguga| // LOCUS Cen.g.1.1 4557 bp RNA RNA 12-FEB-1996 DEFINITION Cenococcum geophilum. str. 155. ACCESSION No information KEYWORDS No information. SOURCE Cenococcum geophilum. str. 155. ORGANISM Cenococcum geophilum. REFERENCE 1 (bases 1 to 1200) AUTHORS Shinohara,M.L., LoBuglio,K.F. and Rogers,S.O. JOURNAL Unpublished STANDARD No information COMMENTS Sequence information (bases 1 to 4557) Corresponding GenBank entry: Z48521 LOCUS CG155ITS 1026 bp DNA PLN 12-SEP-1996 DEFINITION C.geophilum 155 partial rRNA genes and internal transcribed spacers 1 and 2. ACCESSION Z48521 NID g1185091 VERSION Z48521.1 GI:1185091 KEYWORDS internal transcribed spacer; ITS1; ITS2; ribosomal RNA; rRNA gene. SOURCE Cenococcum geophilum. ORGANISM Cenococcum geophilum Eukaryota; Fungi; Ascomycota; Euascomycetes; Loculoascomycetes; mitosporic Loculoascomycetes; Cenococcum. REFERENCE 1 (bases 1 to 1026) AUTHORS Shinohara,M.L., LoBuglio,K.F. and Rogers,S.O. JOURNAL Unpublished REFERENCE 2 (bases 1 to 1026) AUTHORS Shinohara,M.L. TITLE Direct Submission JOURNAL Submitted (27-FEB-1995) Mari L Shinohara, Biochemistry, Dartmouth Medical School, 7200 Vail Building, Hanover, NH, 03755-3844, U.S.A FEATURES Location/Qualifiers source 1..1026 /organism="Cenococcum geophilum" /isolate="155" /db_xref="taxon:5570" intron 1..507 /note="Group I intron, CgSSU" rRNA <508..>536 /gene="SSU rRNA" /note="interrupted by CgSSU" gene 508..536 /gene="SSU rRNA" misc_feature 537..626 /note="internal transcribed spacer 1" /label=ITS1 rRNA 627..827 /gene="5.8S rRNA" gene 627..827 /gene="5.8S rRNA" misc_feature 828..966 /note="internal transcribed spacer 2" /label=ITS2 rRNA <967..>1026 /gene="LSU rRNA" gene 967..1026 /gene="LSU rRNA" BASE COUNT 255 a 246 c 278 g 246 t 1 other BASE COUNT 127 a 123 c 146 g 129 t 4032 others ORIGIN 1 |~~~~~~~ca aggU||uu-- -------(-c cguagaacaa gucuugcagg a-augauucc 61 uugcgcagug uacacuugua --)------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- ---------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 -------|-- --gaa|Gccu u---|----- ---------- ---|ugca-- ---------- 781 gc-cc-gcca a--gu----- ---------a gaucuaggcg acuuuaaaua auuucuagga 841 ucgcua---- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 -------UGC C|--A----- -----|GUC- Gg-------- CC-c------ ---------- 1021 --(acg---- ---------- ---------- ---------c a-ugugu--- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 ---------- ---------- ---------- ---------- ---------- ---------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- ---------- ---------- ---------- 1561 ---------- ---------- ---------- ---------- ---------- ---------- 1621 ---------G --C---GGC| --GA|CACU- U-U-C|GAAU |UGA-C-GGG |GAUA----| 1681 C-CC------ ---------- ---------- -|U------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- --------AA AG|------C 1801 CUG------- -U-CG|C-AC C|-------- ---------- ---------- ---------- 1861 ---|AAC-U- CU-AuG---- -U-GG-(GAA A--------- ---------- ---------- 1921 ---------- -)-CCG--CU --A-G-A-G- GGG|----|C C-C-G-U-Gc (uaacu---- 1981 ---------- --------)a CA-C-G--G- G|-------- ---U|GGU-A ACA-GA-CG- 2041 A-C-AuGG-| -auaccu--- ------|cca cgcu------ ---------- --(---uuu- 2101 ---)------ -ggu-gug-a -----uacua u--------- ---------- ---------- 2161 ---------- ---------- ---------- ---GG|-CAA -|UC-CGCA| GCG|-AAg-- 2221 |CCUC----- ------(--- ---------- ---------- ---------- ---------- 2281 ---------- ----)|-|u| AA----|guc cgg------- ---------- ---------- 2341 (c-cg----- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 -----cc-gg au-|a|u|-- ---------- GAGG|--AA| CGU|--UCA| CA-GACU-A| 2521 -AGU|GGA-A --G-UG|G|G UGGa------ ---------- -(cguucgcc gc-------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---uCUGCU- |UAA-GA-UA |UA-GUC|G| -|GG-----| -----|ccu- uugg------ 2761 ----(-GAAA ---------- )--------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---------- ---------- 2881 --|-----cu aa--g-g-g- g|-------- --|---guga guacacugcu c-gaaauuca 2941 aacuugaagg ugucucggau ---------- ggcgccuugu guu--agaa- uuu-gagacu 3001 gucaacugcc ucgugguuug acagcuc--- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---------- ---------- 3121 ---------- ---------- ---------- ---------- ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ---------- ---------- ---------- ---------- ---------- ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- ---------- 4021 ---------- ---------- ---------- ---------- ---------- ---------- 4081 ---------- ---------- ---------- ---------- ---------- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- ---------- ---------- ---------- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ----uuaaa| -----AC|G- -||uuc-cgu agguga| // LOCUS Cen.g.2.1 4557 bp RNA RNA 12-FEB-1996 DEFINITION Cenococcum geophilum.. ACCESSION No information KEYWORDS No information. SOURCE Cenococcum geophilum. ORGANISM Cenococcum geophilum. REFERENCE 1 (bases 1 to 1200) AUTHORS Shinohara,M.L., LoBuglio,K.F. and Rogers,S.O. JOURNAL Unpublished STANDARD No information COMMENTS Sequence information (bases 1 to 4557) Corresponding GenBank entry: Z48526 LOCUS CGCU10ITS 1022 bp DNA PLN 12-SEP-1996 DEFINITION C.geophilum CU 10 partial rRNA genes and internal transcribed spacers 1 and 2. ACCESSION Z48526 NID g1185096 VERSION Z48526.1 GI:1185096 KEYWORDS internal transcribed spacer; ITS1; ITS2; ribosomal RNA; rRNA gene. SOURCE Cenococcum geophilum. ORGANISM Cenococcum geophilum Eukaryota; Fungi; Ascomycota; Euascomycetes; Loculoascomycetes; mitosporic Loculoascomycetes; Cenococcum. REFERENCE 1 (bases 1 to 1022) AUTHORS Shinohara,M.L., LoBuglio,K.F. and Rogers,S.O. JOURNAL Unpublished REFERENCE 2 (bases 1 to 1022) AUTHORS Shinohara,M.L. TITLE Direct Submission JOURNAL Submitted (27-FEB-1995) Mari L Shinohara, Biochemistry, Dartmouth Medical School, 7200 Vail Building, Hanover, NH, 03755-3844, U.S.A FEATURES Location/Qualifiers source 1..1022 /organism="Cenococcum geophilum" /isolate="CU 10" /db_xref="taxon:5570" intron 1..493 /note="Group I intron, CgSSU" rRNA <494..>523 /gene="SSU rRNA" /note="interrupted by CgSSU" gene 494..523 /gene="SSU rRNA" misc_feature 524..613 /note="internal transcribed spacer 1" /label=ITS1 rRNA 614..815 /gene="5.8S rRNA" gene 614..815 /gene="5.8S rRNA" misc_feature 816..962 /note="internal transcribed spacer 2" /label=ITS2 rRNA <963..>1022 /gene="LSU rRNA" gene 963..1022 /gene="LSU rRNA" BASE COUNT 253 a 250 c 280 g 239 t BASE COUNT 125 a 123 c 145 g 118 t 4046 others ORIGIN 1 |~~~~~~~ca aggU||uu-- -------(-c cguagaacaa gucuugcagg a-augauucc 61 uuccgcagug uacacuugua --)------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- ---------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 -------|-- ---ga|Gccu u---|----- ---------- ---|UGCA-- ---------- 781 gc-ac-gcaa g--gu-u--- ---------a gaucuagg-c gacuuuaaac a--ucuagga 841 ucgcua---- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 -------UGC C|--A----- -----|GUC- Gg-------- CC-------- ---------- 1021 --(ACg---- ---------- ---------- ---------c a-ugu----- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 ---------- ---------- ---------- ---------- ---------- ---------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- ---------- -)-------- ---------- 1561 ---------- ---------- ---------- ---------- ---------- ---------- 1621 ---------G --U---GCG| --CA|CACU- --U-C|GA-- |UGA-C-GGa |--CA----| 1681 C-CU------ ---------- ---------- -|-------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------A AG|------C 1801 CUG------- -U-CG|C-AC C|-------- ---------- ---------- ---------- 1861 ---|AAC-U- CU-GuG---- -U-G---GAA A--------- ---------- ---------- 1921 ---------- ---C-G--CC ----G-A-G- G-G|----|C C-C-G-U-Gc (uaacu---- 1981 ---------- --------)a CA-C-G--G- G|-------- -G-U|GGU-A ACcaGA-CG- 2041 GAc-aGug-| -auacuu--- ------|cca cgcc------ ---------- --(---uuu- 2101 ---)------ -gguagugga -----ua-ua u--------- ---------- ---------- 2161 ---------- ---------- ---------- --GGG|-CAA -|UC-CGCA| GCG|-AAg-- 2221 |CCUC----- ------(--- ---------- ---------- ---------- ---------- 2281 ---------- ----)|-|u| AA----|guc cgg------- ---------- ---------- 2341 (c-cg----- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 -----cc-gg au-|a|u|-- ---------- GAGG|--AA| CGU|--UCA| CA-GACU-A| 2521 -AGU|GGA-A --G-UG|G|G UGGa------ ---------- -(cguuugc- -c-------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---uCUGCU- |UAA-GA-UA |UA-GUC|G| -|Gg-----| -----|ccc- uugg------ 2761 ----(-GAAA ---------- )--------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---------- ---------- 2881 --|-----cc aa--g-g-g- g|-------- --|---guga guacacugcu u-gaaauuca 2941 aacaggaacg ugcc-cggag ---------- agcgcuc-gu guuauagaa- uuucgagacu 3001 gucgauug-c ucgcgguuug acagcucu-- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---------- ---------- 3121 ---------- ---------- ---------- ---------- ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ---------- ---------- ---------- ---------- ---------- ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- ---------- 4021 ---------- ---------- ---------- ---------- ---------- ---------- 4081 ---------- ---------- ---------- ---------- ---------- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- ---------- ---------- ---------- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -----uaaa| -----AC|G- -||uuc-cgu agguga| // LOCUS Cen.g.3.1 4557 bp RNA RNA 12-FEB-1996 DEFINITION Cenococcum geophilum.. ACCESSION No information KEYWORDS No information. SOURCE Cenococcum geophilum. ORGANISM Cenococcum geophilum. REFERENCE 1 (bases 1 to 1200) AUTHORS Shinohara,M.L., LoBuglio,K.F. and Rogers,S.O. JOURNAL Unpublished STANDARD No information COMMENTS Sequence information (bases 1 to 4557) Corresponding GenBank entry: Z48527 LOCUS CGCU11ITS 1027 bp DNA PLN 12-FEB-1996 DEFINITION C.geophilum CU 11 partial rRNA genes and internal transcribed spacer 1 and 2. ACCESSION Z48527 NID g1185097 VERSION Z48527.1 GI:1185097 KEYWORDS internal transcribed spacer; ITS1; ITS2; ribosomal RNA; rRNA genes. SOURCE Cenococcum geophilum. ORGANISM Cenococcum geophilum Eukaryota; Fungi; Ascomycota; Euascomycetes; Loculoascomycetes; mitosporic Loculoascomycetes; Cenococcum. REFERENCE 1 (bases 1 to 1027) AUTHORS Shinohara,M.L., LoBuglio,K.F. and Rogers,S.O. JOURNAL Unpublished REFERENCE 2 (bases 1 to 1027) AUTHORS Shinohara,M.L. TITLE Direct Submission JOURNAL Submitted (27-FEB-1995) Mari L Shinohara, Biochemistry, Dartmouth Medical School, 7200 Vail Building, Hanover, NH, 03755-3844, U.S.A FEATURES Location/Qualifiers source 1..1027 /organism="Cenococcum geophilum" /isolate="CU 11" /db_xref="taxon:5570" intron 1..514 /note="Group I intron, CgSSU" rRNA 515..543 /partial /gene="SSU rRNA" /note="interrupted by CgSSU" gene 515..543 /gene="SSU rRNA" misc_feature 544..633 /note="internal transcribed spacer 1" /label=ITS1 rRNA 634..826 /gene="5.8S rRNA" gene 634..826 /gene="5.8S rRNA" misc_feature 827..967 /note="internal transcribed spacer 2" /label=ITS2 rRNA 968..1027 /partial /gene="LSU rRNA" gene 968..1027 /gene="LSU rRNA" BASE COUNT 257 a 247 c 271 g 250 t 2 others BASE COUNT 134 a 127 c 142 g 129 t 4025 others ORIGIN 1 |~~~~~~~ca aggU||uu-- -------(-c cguagaacaa gucuugcagg a-augauucc 61 uuccgccgug uacacuugua --)------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- ---------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 -------|-- --gaa|Gccu u---|----- ---------- ---|UGCA-- ---------- 781 gccac(gcaa --)gu----- ---------a gauccagg-c gacuuuaaau aau-c-agga 841 ucgcua---- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 -------UGC C|--A----- -----|GUC- Gg-------- CC-c------ ---------- 1021 --(acg---- ---------- ---------- ---------c a-cgugug-- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 ---------- ---------- ---------- ---------- ---------- ---------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- ---------- ---------- ---------- 1561 ---------- ---------- ---------- ---------- ---------- ---------- 1621 ---------G --C---GGC| --GA|CACU- U-U-C|GAAU |UGA-C-GGG |GACA----| 1681 C-CC------ ---------- ---------- -|U------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- --------AA AG|------C 1801 CUG------- -U-CG|C-AC C|-------- ---------- ---------- ---------- 1861 ---|AAC-U- CU-GuG---- -U-GG-(GAA A--------- ---------- ---------- 1921 ---------- -)-CCG--CU --C-G-A-G- G-G|----|C C-C-G-U-Gc (uaacu---- 1981 ---------- --------)a CA-C-G--G- G|-------- -G-U|GGU-A AAA-GA-CG- 2041 A-C-AuGG-| -auacuu--- ------|uca cgcc------ ---------- --(---uuu- 2101 ---)------ -ggu-gugga -----uacua u--------- ---------- ---------- 2161 ---------- ---------- ---------- --GGG|-CAA -|UC-CGCA| GCG|-AAg-- 2221 |CCUC----- ------(--- ---------- ---------- ---------- ---------- 2281 ---------- ----)|-|u| AA----|guc cgg------- ---------- ---------- 2341 (c-cg----- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 -----cc--g au-|a|u|-- ---------- GAGG|--AA| CGU|--UCA| CA-GACU-A| 2521 -AGU|G-A-A --G-UG|G|G UGGa------ ---------- -(cguuugc- -c-------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---uCUGCU- |UAA-GA-UA |UA-GUC|G| -|GU-----| -----|cccc uugg------ 2761 ----(-GAAA ---------- )--------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---------- ---------- 2881 --|-----cu aa--g-g-g- g|-------- --|---guga guacacugcu cugaaauuua 2941 aacacgaacg ugcguaauua uaauaaucca cggcgcucau guu--ggaa- uuu-gagacu 3001 gucaauugcc ucgug-uuug acagcuc--- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---------- ---------- 3121 ---------- ---------- ---------- ---------- ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ---------- ---------- ---------- ---------- ---------- ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- ---------- 4021 ---------- ---------- ---------- ---------- ---------- ---------- 4081 ---------- ---------- ---------- ---------- ---------- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- ---------- ---------- ---------- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ----uuaaa| -----AU|G- -||uuc-cgu agguga| // LOCUS Cen.g.4.1 4557 bp RNA RNA 23-FEB-1995 DEFINITION Cenococcum geophilum.. ACCESSION No information KEYWORDS No information. SOURCE Cenococcum geophilum. ORGANISM Cenococcum geophilum. REFERENCE 1 (bases 1 to 1200) AUTHORS Rogers,S.O., Yan,Z.H., Shinohara,M., LoBuglio,K.F. and Wang,C .J. TITLE Messenger RNA intron in the nuclear 18s ribosomal RNA gene of deuteromycetes JOURNAL Curr. Genet. 23 (4), 338-342 (1993) STANDARD No information COMMENTS Sequence information (bases 1 to 4557) Corresponding GenBank entry: Z11998 LOCUS CG18SRNAG 1027 bp DNA PLN 05-FEB-1997 DEFINITION C.geophilum gene for 18S ribosomal RNA. ACCESSION Z11998 NID g683534 VERSION Z11998.1 GI:683534 KEYWORDS group I intron; internal transcribed spacer 1; internal transcribed spacer 2; LSU rRNA gene; ribosomal RNA; rRNA gene; SSU rRNA gene. SOURCE Cenococcum geophilum. ORGANISM Cenococcum geophilum Eukaryota; Fungi; Ascomycota; Euascomycetes; Loculoascomycetes; mitosporic Loculoascomycetes; Cenococcum. REFERENCE 1 (bases 1 to 532) AUTHORS Rogers,S.O., Yan,Z.H., Shinohara,M., LoBuglio,K.F. and Wang,C.J. TITLE Messenger RNA intron in the nuclear 18s ribosomal RNA gene of deuteromycetes JOURNAL Curr. Genet. 23 (4), 338-342 (1993) MEDLINE 93223268 REFERENCE 2 (bases 1 to 532) AUTHORS Rogers,S.O. TITLE Direct Submission JOURNAL Submitted (21-APR-1992) Scott O Rogers, Environmental and Forest Biology, State University, of New York, 1 Forestry Dr., Syracuse, NY, 13210, USA REFERENCE 3 (bases 1 to 1027) AUTHORS Shinohara,M.L. TITLE Direct Submission JOURNAL Submitted (22-FEB-1995) Mari L. Shinohara,Biochemistry/Dartmouth Medical School, 7200 Vail Building, Hanover, NH 03755-3844, U. S. A COMMENT On Feb 26, 1995 this sequence version replaced gi:2566. FEATURES Location/Qualifiers source 1..1027 /organism="Cenococcum geophilum" /isolate="Hunt8" /db_xref="taxon:5570" gene 1..506 /gene="SSU" intron 1..506 /gene="SSU" /note="group I intron, CgSSU" /evidence=experimental rRNA <507..535 /gene="SSU rRNA" /note="interrupted by CgSSU" gene 507..535 /gene="SSU rRNA" misc_feature 536..623 /note="internal transcribed spacer I" /label=ITS1 rRNA 624..826 /gene="5.8S rRNA" gene 624..826 /gene="5.8S rRNA" misc_feature 827..966 /note="internal transcribed spacer 2" /label=ITS2 rRNA 967..>1027 /gene="LSU rRNA" gene 967..1027 /gene="LSU rRNA" BASE COUNT 256 a 250 c 274 g 244 t 3 others BASE COUNT 127 a 124 c 139 g 126 t 4041 others ORIGIN 1 |~~~~~~~~~ ~~~~||uu-- -------(-c cguagaacaa gucuugcagg a-augauucc 61 uuccgcagug uacacuugua --)------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- ---------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 -------|-- --gaa|Gccu u---|----- ---------- ---|UGCA-- ---------- 781 gccac(gcaa --)gu----- ---------a gaucuaggcg acuuuaaaua auuucuagga 841 ucgcua---- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 -------UGC C|--A----- -----|GUC- Gg-------- CC-c------ ---------- 1021 --(acg---- ---------- ---------- ---------c a-ugugu--- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 ---------- ---------- ---------- ---------- ---------- ---------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- ---------- ---------- ---------- 1561 ---------- ---------- ---------- ---------- ---------- ---------- 1621 ---------G --C---GGC| --GA|CACU- U-U-C|GAAU |UGA-C-GGG |GAUA----| 1681 C-CC------ ---------- ---------- -|U------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- --------AA AG|------C 1801 CUG------- -U-CG|C-AC C|-------- ---------- ---------- ---------- 1861 ---|AAC-U- CU-AuG---- -U-GG-(GAA A--------- ---------- ---------- 1921 ---------- -)-CCG--CU --A-G-A-G- G-G|u---|C C-C-G-U-Gc (uaacu---- 1981 ---------- --------)a CA-C-G--G- G|-------- ---U|GGU-A ACA-GA-CG- 2041 A-C-AuGG-| -auaccu--- ------|cca cgcu------ ---------- --(---uuu- 2101 ---)------ -ggu-gug-a -----uacua u--------- ---------- ---------- 2161 ---------- ---------- ---------- ---GG|-CAA -|UC-CGCA| GCG|-AAg-- 2221 |CCUC----- ------(--- ---------- ---------- ---------- ---------- 2281 ---------- ----)|-|u| AA----|guc -gg------- ---------- ---------- 2341 -c-cg----- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 -----cc-gg au-|a|u|-- ---------- GAGG|--AA| CGU|--UCA| CA-GACU-A| 2521 -AGU|GGA-A --G-UG|G|G UGGa------ ---------- -(cguucgcc gc-------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---uCUGCU- |UAA-GA-UA |UA-GUC|G| -|GG-----| -----|cccc uug------- 2761 ----(-GAAA ---------- )--------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---------- ---------- 2881 --|-----cu aa--g-g-g- g|-------- --|---guga guacacugcu c-gaaauuca 2941 aacuugaagg ugucucggau ---------- -ggcgccuau guu--agaa- uuucgagacu 3001 gucaacugcc ncnugguuug acagcuc--- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---------- ---------- 3121 ---------- ---------- ---------- ---------- ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ---------- ---------- ---------- ---------- ---------- ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- ---------- 4021 ---------- ---------- ---------- ---------- ---------- ---------- 4081 ---------- ---------- ---------- ---------- ---------- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- ---------- ---------- ---------- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ----uuaaa| -----AC|G- -||uuc-cgu agguga| // LOCUS Cen.g.5.1 4557 bp RNA RNA 12-FEB-1996 DEFINITION Cenococcum geophilum.. ACCESSION No information KEYWORDS No information. SOURCE Cenococcum geophilum. ORGANISM Cenococcum geophilum. REFERENCE 1 (bases 1 to 1200) AUTHORS Shinohara,M.L., LoBuglio,K.F. and Rogers,S.O. JOURNAL Unpublished STANDARD No information COMMENTS Sequence information (bases 1 to 4557) Corresponding GenBank entry: Z48529 LOCUS CGHU9ITS 1025 bp DNA PLN 12-SEP-1996 DEFINITION C.geophilum HUNT-9 partial rRNA genes and internal transcribed spacers 1 and 2. ACCESSION Z48529 NID g1185099 VERSION Z48529.1 GI:1185099 KEYWORDS internal transcribed spacer; ITS1; ITS2; ribosomal RNA; rRNA gene. SOURCE Cenococcum geophilum. ORGANISM Cenococcum geophilum Eukaryota; Fungi; Ascomycota; Euascomycetes; Loculoascomycetes; mitosporic Loculoascomycetes; Cenococcum. REFERENCE 1 (bases 1 to 1025) AUTHORS Shinohara,M.L., LoBuglio,K.F. and Rogers,S.O. JOURNAL Unpublished REFERENCE 2 (bases 1 to 1025) AUTHORS Shinohara,M.L. TITLE Direct Submission JOURNAL Submitted (27-FEB-1995) Mari L Shinohara, Biochemistry, Dartmouth Medical School, 7200 Vail Building, Hanover, NH, 03755-3844, U.S.A FEATURES Location/Qualifiers source 1..1025 /organism="Cenococcum geophilum" /isolate="HUNT-9" /db_xref="taxon:5570" intron 1..506 /note="Group I intron, CgSSU" rRNA <507..>536 /gene="SSU rRNA" /note="interrupted by CgSSU" gene 507..536 /gene="SSU rRNA" misc_feature 537..625 /note="internal transcribed spacer 1" /label=ITS1 rRNA 626..826 /gene="5.8S rRNA" gene 626..826 /gene="5.8S rRNA" misc_feature 827..965 /note="internal transcribed spacer 2" /label=ITS2 rRNA <966..>1025 /gene="LSU rRNA" gene 966..1025 /gene="LSU rRNA" BASE COUNT 255 a 251 c 275 g 244 t BASE COUNT 128 a 125 c 145 g 126 t 4033 others ORIGIN 1 |~~~~~~~ca aggU||uu-- -------(-c cguagaacaa gucuugcagg a-augauucc 61 uuccgcagug uacacuugua --)------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- ---------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 -------|-- --gaa|Gccu u---|----- ---------- ---|UGCA-- ---------- 781 gccac(gcaa --)gu----- ---------a gaucuagg-c gacuuuaaau aauucuagga 841 ucgcua---- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 -------UGC C|--A----- -----|GUC- Gg-------- CC-c------ ---------- 1021 --(acg---- ---------- ---------- ---------c a-ugu----- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 ---------- ---------- ---------- ---------- ---------- ---------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- ---------- ---------- ---------- 1561 ---------- ---------- ---------- ---------- ---------- ---------- 1621 ---------g --u---GCG| --GA|CACU- U-U-C|GAAU |UGA-C-GGG |GAUA----| 1681 C-CC------ ---------- ---------- -|U------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- --------AA AG|------C 1801 CUG------- -U-CG|C-AC C|-------- ---------- ---------- ---------- 1861 ---|AAC-U- CU-AuG---- -U-GG-(GAA A--------- ---------- ---------- 1921 ---------- -)-CCG--CU --A-G-A-G- G-G|----|C C-C-G-U-Gc (uaacu---- 1981 ---------- --------)a CA-C-G--G- G|-------- -G-U|GGU-A ACA-GA-CG- 2041 A-C-AuGG-| -auaccu--- ------|cca cgcu------ ---------- --(---uuu- 2101 ---)------ -ggu-gugga -----uacua u--------- ---------- ---------- 2161 ---------- ---------- ---------- --GGG|-CAA -|UC-CGCA| GCG|-AAg-- 2221 |CCUC----- ------(--- ---------- ---------- ---------- ---------- 2281 ---------- ----)|-|u| AA----|guc cgg------- ---------- ---------- 2341 (c-cg----- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 -----cc-gg au-|a|u|-- ---------- GAGG|--AA| CGU|--UCA| CA-GACU-A| 2521 -AGU|GGA-A --G-UG|G|G UGGa------ ---------- -(cguucgcc gc-------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---uCUGCU- |UAA-GA-UA |UA-GUC|G| -|GG-----| -----|cccc uug------- 2761 ----(-GAAA ---------- )--------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---------- ---------- 2881 --|-----cu aa--g-g-g- g|-------- --|---guga guacacugcu c-gaaauuca 2941 aacuugaagg ugucucggau ---------- -ggcgccugu guu--agaa- uuucgagacu 3001 gucaauugcc ucgcgguuug acagcuc--- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---------- ---------- 3121 ---------- ---------- ---------- ---------- ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ---------- ---------- ---------- ---------- ---------- ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- ---------- 4021 ---------- ---------- ---------- ---------- ---------- ---------- 4081 ---------- ---------- ---------- ---------- ---------- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- ---------- ---------- ---------- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ----uuaaa| -----AC|G- -||uuc-cgu agguga| // LOCUS Cen.g.6.1 4557 bp RNA RNA 12-FEB-1996 DEFINITION Cenococcum geophilum.. ACCESSION No information KEYWORDS No information. SOURCE Cenococcum geophilum. ORGANISM Cenococcum geophilum. REFERENCE 1 (bases 1 to 1200) AUTHORS Shinohara,M.L., LoBuglio,K.F. and Rogers,S.O. JOURNAL Unpublished STANDARD No information COMMENTS Sequence information (bases 1 to 4557) Corresponding GenBank entry: Z48533 LOCUS CGPACITS 1017 bp DNA PLN 12-SEP-1996 DEFINITION C.geophilum PAC partial rRNA genes and internal transcribed spacers 1 and 2. ACCESSION Z48533 NID g1185103 VERSION Z48533.1 GI:1185103 KEYWORDS internal transcribed spacer; ITS1; ITS2; ribosomal RNA; rRNA gene. SOURCE Cenococcum geophilum. ORGANISM Cenococcum geophilum Eukaryota; Fungi; Ascomycota; Euascomycetes; Loculoascomycetes; mitosporic Loculoascomycetes; Cenococcum. REFERENCE 1 (bases 1 to 1017) AUTHORS Shinohara,M.L., LoBuglio,K.F. and Rogers,S.O. JOURNAL Unpublished REFERENCE 2 (bases 1 to 1017) AUTHORS Shinohara,M.L. TITLE Direct Submission JOURNAL Submitted (27-FEB-1995) Mari L Shinohara, Biochemistry, Dartmouth Medical School, 7200 Vail Building, Hanover, NH, 03755-3844, U.S.A FEATURES Location/Qualifiers source 1..1017 /organism="Cenococcum geophilum" /isolate="PAC" /db_xref="taxon:5570" intron 1..500 /note="Group I intron, CgSSU" rRNA <501..>529 /gene="SSU rRNA" /note="interrupted by CgSSU" gene 501..529 /gene="SSU rRNA" misc_feature 530..617 /note="internal transcribed spacer 1" /label=ITS1 rRNA 618..820 /gene="5.8S rRNA" gene 618..820 /gene="5.8S rRNA" misc_feature 821..957 /note="internal transcribed spacer 2" /label=ITS2 rRNA <958..>1017 /gene="LSU rRNA" gene 958..1017 /gene="LSU rRNA" BASE COUNT 254 a 246 c 270 g 245 t 2 others BASE COUNT 126 a 126 c 140 g 124 t 4041 others ORIGIN 1 |~~~~~~~ca aggU||uu-- -------(-c cguagaacaa gucuugcagg a-augauucc 61 uugcgccgug uacacuugua --)------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- ---------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 -------|-- --gaa|Gccu u---|----- ---------- ---|UGCA-- ---------- 781 gccac(gcaa --)gu----- ---------a gauccag--c gacucuaaau aauuccagga 841 ucgcua---- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 -------UGC C|--A----- -----|GUC- Gg-------- CC-c------ ---------- 1021 --(acg---- ---------- ---------- ---------c aacgugu--- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 ---------- ---------- ---------- ---------- ---------- ---------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- ---------- ---------- ---------- 1561 ---------- ---------- ---------- ---------- ---------- ---------- 1621 ---------g c-u---GGC| --GA|CACU- U-U-C|GA-U |UGA-C-GGG |GACA----| 1681 C-CU------ ---------- ---------- -|-------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- --------AA AG|------C 1801 CUG------- -U-CG|C-AC C|-------- ---------- ---------- ---------- 1861 ---|AAC-U- CU-GcG---- -U-GG---aa ---------- ---------- ---------- 1921 ---------- ---CCG--CU --C-G-A-G- g-g|----|- c-c-g-u-gc (u-acu---- 1981 ---------- --------)a ca-c-g--g- g|-------- ---u|-GU-a a-a-GA-CG- 2041 A-c-a-ug-| -auacuu--- ------|uca cgcc------ ---------- --(---uuu- 2101 ---)------ -ggu-gug-a -----uacua u--------- ---------- ---------- 2161 ---------- ---------- ---------- ---GG|-CAA -|UC-CGCA| GCG|-AAg-- 2221 |CCUC----- ------(--- ---------- ---------- ---------- ---------- 2281 ---------- ----)|-|u| AA----|guc -gg------- ---------- ---------- 2341 -c-cg----- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 -----cc-gg au-|a|u|-- ---------- GAGG|--AA| CGU|--UCA| CA-GACU-A| 2521 -AGU|GGA-A --G-UG|G|G UGGa------ ---------- -(cguuug-c gc-------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---uCUGCU- |UAA-GA-UA |UAAGUC|G| -|Gu-----| -----|cccc uuag------ 2761 ----(-GAAA ---------- )--------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---------- ---------- 2881 --|-----cu aauug-g-g- g|-------- --|---guga guacacugcu c-gaaauuca 2941 aacuucaagg ugucucggag ---------- -ggcgccugu guu--agaaa uuucgagacu 3001 gucaacugcc nngugguuug acagcuc--- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---------- ---------- 3121 ---------- ---------- ---------- ---------- ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ---------- ---------- ---------- ---------- ---------- ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- ---------- 4021 ---------- ---------- ---------- ---------- ---------- ---------- 4081 ---------- ---------- ---------- ---------- ---------- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- ---------- ---------- ---------- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ----uuaaa| -----AC|G- -||uuc-cgu agguga| // LOCUS Cen.g.7.1 4557 bp RNA RNA 12-FEB-1996 DEFINITION Cenococcum geophilum.. ACCESSION No information KEYWORDS No information. SOURCE Cenococcum geophilum. ORGANISM Cenococcum geophilum. REFERENCE 1 (bases 1 to 1200) AUTHORS Shinohara,M.L., LoBuglio,K.F. and Rogers,S.O. JOURNAL Unpublished STANDARD No information COMMENTS Sequence information (bases 1 to 4557) Corresponding GenBank entry: Z48534 LOCUS CGPILITS 1026 bp DNA PLN 12-SEP-1996 DEFINITION C.geophilum PIL partial rRNA genes and internal transcribed spacers 1 and 2. ACCESSION Z48534 NID g1185104 VERSION Z48534.1 GI:1185104 KEYWORDS internal transcribed spacer; ITS1; ITS2; ribosomal RNA; rRNA gene. SOURCE Cenococcum geophilum. ORGANISM Cenococcum geophilum Eukaryota; Fungi; Ascomycota; Euascomycetes; Loculoascomycetes; mitosporic Loculoascomycetes; Cenococcum. REFERENCE 1 (bases 1 to 1026) AUTHORS Shinohara,M.L., LoBuglio,K.F. and Rogers,S.O. JOURNAL Unpublished REFERENCE 2 (bases 1 to 1026) AUTHORS Shinohara,M.L. TITLE Direct Submission JOURNAL Submitted (27-FEB-1995) Mari L Shinohara, Biochemistry, Dartmouth Medical School, 7200 Vail Building, Hanover, NH, 03755-3844, U.S.A FEATURES Location/Qualifiers source 1..1026 /organism="Cenococcum geophilum" /isolate="PIL" /db_xref="taxon:5570" intron 1..498 /note="Group I intron, CgSSU" rRNA <499..>528 /gene="SSU rRNA" /note="interrupted by CgSSU" gene 499..528 /gene="SSU rRNA" misc_feature 529..618 /note="internal transcribed spacer 1" /label=ITS1 rRNA 619..822 /gene="5.8S rRNA" gene 619..822 /gene="5.8S rRNA" misc_feature 823..966 /note="internal transcribed spacer 2" /label=ITS2 rRNA <967..>1026 /gene="LSU rRNA" gene 967..1026 /gene="LSU rRNA" BASE COUNT 257 a 258 c 271 g 239 t 1 others BASE COUNT 127 a 127 c 141 g 121 t 4041 others ORIGIN 1 |~~~~~~~ca aggu||uu-- -------(-c cguagaacaa gucuugcagg aaggaauucc 61 uuccgcagug uacacuugua --)------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- ---------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 -------|-- ---ga|Gccu u---|----- ---------- ---|UGCA-- ---------- 781 gcca-(gcaa --)gu-c--- ---------a gaucuaggcg acuuuaaaua aauucuagga 841 ucgcua---- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 -------UGC C|--A----- -----|GUC- Gg-------- CC-c------ ---------- 1021 --(acg---- ---------- ---------- ---------c a-ugu----- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 ---------- ---------- ---------- ---------- ---------- ---------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- ---------- ---------- ---------- 1561 ---------- ---------- ---------- ---------- ---------- ---------- 1621 ---------g --u--GCGC| --GA|CACU- U-U-C|GAAU |UGA-C-GGG |GAUA----| 1681 C-CC------ ---------- ---------- -|U------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- --------AA AG|------C 1801 CUG------- -U-CG|C-AC C|-------- ---------- ---------- ---------- 1861 ---|AAC-U- CU-GuG---- -U-GG---aa ---------- ---------- ---------- 1921 ---------- ---CCG--CU --A-G-A-G- g--|----|- c-c-g-u-gc (-aacu---- 1981 ---------- --------)a CA-C-G--G- G|-------- ---u|-GU-A ACA-GA-CG- 2041 A-C-AuGG-| -auaccu--- ------|cca cgcc------ ---------- --(---uuu- 2101 ---)------ -ggu-gugga -----uacca u--------- ---------- ---------- 2161 ---------- ---------- ---------- --GGG|-CAA -|UC-CGCA| GCG|-AAg-- 2221 |CCUC----- ------(--- ---------- ---------- ---------- ---------- 2281 ---------- ----)|-|u| AA----|guc cgg------- ---------- ---------- 2341 (c-cg----- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 -----cc--g au-|a|u|-- ---------- GAGG|--AA| CGU|--UCA| CA-GACU-A| 2521 -AGU|GGA-A --G-UG|G|G UGGa------ ---------- -(cguucgc- gc-------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---uCUGCU- |UAA-GA-UA |UA-GUC|G| -|Gg-----| -----|ccc- uugg------ 2761 ----(-GAAA ---------- )--------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---------- ---------- 2881 --|-----cc aa--g-g-g- g|-------- --|---guga guacacugcu c-gaaauuca 2941 gacuugaacg ugucucg-au ---------- -agcgcucau guu--agaa- uuucgagacu 3001 gucgacugcc ucgugguuug acagcuc--- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---------- ---------- 3121 ---------- ---------- ---------- ---------- ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ---------- ---------- ---------- ---------- ---------- ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- ---------- 4021 ---------- ---------- ---------- ---------- ---------- ---------- 4081 ---------- ---------- ---------- ---------- ---------- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- ---------- ---------- ---------- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ----uuaaa| -----AC|G- -||uuc-cgu agguga| // LOCUS Cen.g.8.1 4557 bp RNA RNA 12-FEB-1996 DEFINITION Cenococcum geophilum.. ACCESSION No information KEYWORDS No information. SOURCE Cenococcum geophilum. ORGANISM Cenococcum geophilum. REFERENCE 1 (bases 1 to 1200) AUTHORS Shinohara,M.L., LoBuglio,K.F. and Rogers,S.O. JOURNAL Unpublished STANDARD No information COMMENTS Sequence information (bases 1 to 4557) Corresponding GenBank entry: Z48536 LOCUS CGS81ITS 1017 bp DNA PLN 12-SEP-1996 DEFINITION C.geophilum S8-1 partial rRNA genes and internal transcribed spacers 1 and 2. ACCESSION Z48536 NID g1185106 VERSION Z48536.1 GI:1185106 KEYWORDS internal transcribed spacer; ITS1; ITS2; ribosomal RNA; rRNA gene. SOURCE Cenococcum geophilum. ORGANISM Cenococcum geophilum Eukaryota; Fungi; Ascomycota; Euascomycetes; Loculoascomycetes; mitosporic Loculoascomycetes; Cenococcum. REFERENCE 1 (bases 1 to 1017) AUTHORS Shinohara,M.L., LoBuglio,K.F. and Rogers,S.O. JOURNAL Unpublished REFERENCE 2 (bases 1 to 1017) AUTHORS Shinohara,M.L. TITLE Direct Submission JOURNAL Submitted (27-FEB-1995) Mari L Shinohara, Biochemistry, Dartmouth Medical School, 7200 Vail Building, Hanover, NH, 03755-3844, U.S.A FEATURES Location/Qualifiers source 1..1017 /organism="Cenococcum geophilum" /isolate="S8-1" /db_xref="taxon:5570" intron 1..493 /note="Group I intron, CgSSU" rRNA <494..>523 /gene="SSU rRNA" /note="interrupted by CgSSU" gene 494..523 /gene="SSU rRNA" misc_feature 524..615 /note="internal transcribed spacer 1" /label=ITS1 rRNA 616..818 /gene="5.8S rRNA" gene 616..818 /gene="5.8S rRNA" misc_feature 819..957 /note="internal transcribed spacer 2" /label=ITS2 rRNA <958..>1017 /gene="LSU rRNA" gene 958..1017 /gene="LSU rRNA" BASE COUNT 250 a 250 c 274 g 242 t 1 others BASE COUNT 124 a 123 c 140 g 124 t 4046 others ORIGIN 1 |~~~~~~~ca aggU||uu-- -------(-c cguagaacaa gucuugcagg a-augauucc 61 uuccgcagug uacacuugua --)------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- ---------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 -------|-- ---ga|Gccu u---|----- ---------- ---|UGCA-- ---------- 781 gccac(gcaa --)gu----- ---------a gaucuagg-c gacuuuaaau aauccuagga 841 u-gcua---- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 -------UGC C|--A----- -----|GUC- Gg-------- CC-c------ ---------- 1021 --(-cg---- ---------- ---------- ---------c a-u------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 ---------- ---------- ---------- ---------- ---------- ---------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- ---------- ---------- ---------- 1561 ---------- ---------- ---------- ---------- ---------- ---------- 1621 --------gg --u--GGCC| --GA|CACU- U-U-C|GA-U |UGA-C-GGG |GAUA----| 1681 C-CU------ ---------- ---------- -|-------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- --------AA AG|------C 1801 CUG------- -U-CG|C-AC C|-------- ---------- ---------- ---------- 1861 ---|AAC-U- CU-GuG---- -U-GG---aa ---------- ---------- ---------- 1921 ---------- ----CG--Cu --A-G-A-G- g--|----|- c-c-g-u-gc (-aacu---- 1981 ---------- --------)a CA-C-G--G- G|-------- ---u|-GU-A ACA-GA-CG- 2041 A-C-A-uG-| -auaccu--- ------|cca cgcc------ ---------- --(---uuu- 2101 ---)------ -ggu-gugga -----uacua u--------- ---------- ---------- 2161 ---------- ---------- ---------- --GGG|-CAA -|UC-CGCA| GCG|-AAg-- 2221 |CCUC----- ------(--- ---------- ---------- ---------- ---------- 2281 ---------- ----)|-|u| AA----|guc cgg------- ---------- ---------- 2341 (c-cg----- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 -----cc-gg au-|a|u|-- ---------- GAGG|--AA| CGU|--UCA| CA-GACU-A| 2521 -AGU|GGA-A --G-UG|G|G UGGa------ ---------- -(cguucgcc gc-------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---uCUGCU- |UAA-GA-UA |UA-GUC|G| -|GG-----| -----|cccc uugg------ 2761 ----(-GAAA ---------- )--------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---------- ---------- 2881 --|-----cu aa--g-g-g- g|-------- --|---guga guacacugcu c-gaaauuca 2941 aacuugaacg ugucucggau ---------- -ggcgcuuau guu--agaa- uuuugagacu 3001 gucaacugcc ucgugguuug acagcuc--- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---------- ---------- 3121 ---------- ---------- ---------- ---------- ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ---------- ---------- ---------- ---------- ---------- ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- ---------- 4021 ---------- ---------- ---------- ---------- ---------- ---------- 4081 ---------- ---------- ---------- ---------- ---------- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- ---------- ---------- ---------- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ----uuaaa| -----AC|G- -||uuc-cgu agguga| // LOCUS Cen.g.9.1 4557 bp RNA RNA 12-FEB-1996 DEFINITION Cenococcum geophilum. str. Tar. ACCESSION No information KEYWORDS No information. SOURCE Cenococcum geophilum. str. Tar. ORGANISM Cenococcum geophilum. REFERENCE 1 (bases 1 to 1200) AUTHORS Shinohara,M.L., LoBuglio,K.F. and Rogers,S.O. JOURNAL Unpublished STANDARD No information COMMENTS Sequence information (bases 1 to 4557) Corresponding GenBank entry: Z48537 LOCUS CGTARITS 1036 bp DNA PLN 12-SEP-1996 DEFINITION C.geophilum TAR partial rRNA genes and internal transcribed spacers 1 and 2. ACCESSION Z48537 NID g1185107 VERSION Z48537.1 GI:1185107 KEYWORDS internal transcribed spacer; ITS1; ITS2; ribosomal RNA; rRNA gene. SOURCE Cenococcum geophilum. ORGANISM Cenococcum geophilum Eukaryota; Fungi; Ascomycota; Euascomycetes; Loculoascomycetes; mitosporic Loculoascomycetes; Cenococcum. REFERENCE 1 (bases 1 to 1036) AUTHORS Shinohara,M.L., LoBuglio,K.F. and Rogers,S.O. JOURNAL Unpublished REFERENCE 2 (bases 1 to 1036) AUTHORS Shinohara,M.L. TITLE Direct Submission JOURNAL Submitted (27-FEB-1995) Mari L Shinohara, Biochemistry, Dartmouth Medical School, 7200 Vail Building, Hanover, NH, 03755-3844, U.S.A FEATURES Location/Qualifiers source 1..1036 /organism="Cenococcum geophilum" /isolate="TAR" /db_xref="taxon:5570" intron 1..511 /note="Group I intron, CgSSU" rRNA <512..>540 /gene="SSU rRNA" /note="interrupted by CgSSU" gene 512..540 /gene="SSU rRNA" misc_feature 541..631 /note="internal transcribed spacer 1" /label=ITS1 rRNA 632..834 /gene="5.8S rRNA" gene 632..834 /gene="5.8S rRNA" misc_feature 835..975 /note="internal transcribed spacer 2" /label=ITS2 rRNA <976..>1036 /gene="LSU rRNA" gene 976..1036 /gene="LSU rRNA" BASE COUNT 251 a 259 c 285 g 240 t 1 others BASE COUNT 126 a 134 c 149 g 120 t 4028 others ORIGIN 1 |~~~~~~~ca aggU||uu-- -------(-c cguagaacaa gucuugcagg a-augauucc 61 uugcgcagug uacacuugua --)------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- ---------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 -------|-- ---ga|Gccu u---|----- ---------- ---|UGCA-- ---------- 781 gccac(gcaa --)gu----- ---------a gauccagg-c gacacuaaac aauucuagga 841 ucgcua---- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 -------UGC C|--A----- -----|GUC- Gg-------- CC-------- ---------- 1021 --(ACg---- ---------- ---------- ---------c a-ugu----- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 ---------- ---------- ---------- ---------- ---------- ---------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- ---------- -)-------- ---------- 1561 ---------- ---------- ---------- ---------- ---------- ---------- 1621 -------GUG --G--CGGC| --GA|CACU- U-U-C|GAAU |UGA-C-GGG |GAUA----| 1681 C-CC------ ---------- ---------- -|U------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- --------AA AG|------C 1801 CUG------- -U-CG|C-AC C|-------- ---------- ---------- ---------- 1861 ---|AAC-U- CU-GuG---- -U-GG-(GAA A--------- ---------- ---------- 1921 ---------- -)-CCG--CU --G-G-A-G- G-G|----|C C-C-G-U-Gc (uaacu---- 1981 ---------- --------)a CA-C-G--G- G|-------- -G-U|GGU-A ACA-Ga-CG- 2041 A-C-AcGG-| -auaccu--- ------|cca cgcc------ ---------- --(uuuuuu- 2101 ---)------ -ggu-gugga -----uacca u--------- ---------- ---------- 2161 ---------- ---------- ---------- --GGG|-CAA -|UC-CGCA| GCG|-AAg-- 2221 |CCUC----- ------(--- ---------- ---------- ---------- ---------- 2281 ---------- ----)|-|u| AA----|guc cgg------- ---------- ---------- 2341 (c-ug----- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 -----cc-gg au-|a|c|-- ---------- GAGG|--AA| CGU|--UCA| CA-GACU-A| 2521 -AGU|GGA-A --G-UG|G|G UGGa------ ---------- -(cguucgcc gc-------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---uCUGCU- |UAA-GA-UA |UA-GUC|G| -|GU-----| -----|cccc uugg------ 2761 ----(-GAAA ---------- )--------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---------- ---------- 2881 --|-----cu aa--g-g-g- g|-------- --|---guga guacacugcc c-gaaauuua 2941 aacuugaacg cgucucggac ---------- -agcgcucau guu--agaa- uuucgagacu 3001 gucgauugcc ucguggcucg acggcuc--- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---------- ---------- 3121 ---------- ---------- ---------- ---------- ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ---------- ---------- ---------- ---------- ---------- ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- ---------- 4021 ---------- ---------- ---------- ---------- ---------- ---------- 4081 ---------- ---------- ---------- ---------- ---------- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- ---------- ---------- ---------- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ----uuaaa| -----AC|G- -||uuc-cgu agguga| // LOCUS Cen.g.10.1 4557 bp RNA RNA 12-SEP-1996 DEFINITION Cenococcum geophilum.. ACCESSION No information KEYWORDS No information. SOURCE Cenococcum geophilum. ORGANISM Cenococcum geophilum. REFERENCE 1 (bases 1 to 1200) AUTHORS Shinohara,M.L., LoBuglio,K.F. and Rogers,S.O. JOURNAL Unpublished STANDARD No information COMMENTS Sequence information (bases 1 to 4557) Corresponding GenBank entry: Z48525 LOCUS CGALB2ITS 1332 bp DNA PLN 12-SEP-1996 DEFINITION C.geophilum ALB-2 partial rRNA genes and internal transcribed spacers 1 and 2. ACCESSION Z48525 NID g1185095 VERSION Z48525.1 GI:1185095 KEYWORDS internal transcribed spacer; ITS1; ITS2; ribosomal RNA; rRNA gene. SOURCE Cenococcum geophilum. ORGANISM Cenococcum geophilum Eukaryota; Fungi; Ascomycota; Euascomycetes; Loculoascomycetes; mitosporic Loculoascomycetes; Cenococcum. REFERENCE 1 (bases 1 to 1332) AUTHORS Shinohara,M.L., LoBuglio,K.F. and Rogers,S.O. JOURNAL Unpublished REFERENCE 2 (bases 1 to 1332) AUTHORS Shinohara,M.L. TITLE Direct Submission JOURNAL Submitted (27-FEB-1995) Mari L Shinohara, Biochemistry, Dartmouth Medical School, 7200 Vail Building, Hanover, NH, 03755-3844, U.S.A FEATURES Location/Qualifiers source 1..1332 /organism="Cenococcum geophilum" /isolate="ALB-2" /db_xref="taxon:5570" rRNA <1..325 /gene="SSU rRNA" gene 1..842 /gene="SSU rRNA" intron 326..813 /gene="SSU rRNA" /note="Group I intron, CgSSU" /evidence=experimental rRNA 814..842 /gene="SSU rRNA" /note="interrupted by CgSSU" misc_feature 843..928 /note="internal transcribed spacer 1" /label=ITS1 rRNA 929..1128 /gene="5.8S rRNA" gene 929..1128 /gene="5.8S rRNA" misc_feature 1129..1272 /note="internal transcribed spacer 2" /label=ITS2 rRNA 1273..>1332 /gene="LSU rRNA" gene 1273..1332 /gene="LSU rRNA" BASE COUNT 327 a 330 c 355 g 320 t BASE COUNT 124 a 122 c 139 g 125 t 4047 others ORIGIN 1 |~~~guaaca aggU||uu-- -------(-c cguagaacaa gucuugcagg a-augauucc 61 uuccgcagug uacacuugua --)------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- ---------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 -------|-- ---ga|Gccu u---|----- ---------- ---|UGCA-- ---------- 781 gc-ac(gcaa g-)gu-u--- ---------a gaucuagg-c gacuuuaaac a--ucuagga 841 ucgcua---- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 -------UGC C|--A----- -----|GUc- GG-------- CC-------- ---------- 1021 --(ACg---- ---------- ---------- ---------c a-u------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 ---------- ---------- ---------- ---------- ---------- ---------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- ---------- -)-------- ---------- 1561 ---------- ---------- ---------- ---------- ---------- ---------- 1621 -------GUG U-G--C-GC| ---A|CACU- U---C|GA-- |UGA-C-GG- |uau-----| 1681 C-CU------ ---------- ---------- -|-------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------A AG|------C 1801 CUG------- -U-CG|C-AC C|-------- ---------- ---------- ---------- 1861 ---|AAC-U- CU-GUG---- -u-g---gaa ---------- ---------- ---------- 1921 ---------- ----CG--Cu --A-G-A-G- --G|------ C-C-G-U-Gc (-aacu---- 1981 ---------- --------)a CA-C-G--G- G|-------- ---u--GU-A ACA-GA-CG- 2041 A-C-A-UG-| -auaccu--- ------|cca cgcc------ ---------- --(---uuu- 2101 ---)------ -ggu-gugga -----uacua u--------- ---------- ---------- 2161 ---------- ---------- ---------- --GGG|-CAA -|UC-CGCA| GCG|-AAg-- 2221 |CCUC----- ------(--- ---------- ---------- ---------- ---------- 2281 ---------- ----)|-|u| AA----|guc cgg------- ---------- ---------- 2341 (c-cg----- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 -----cc-gg au-|a|u|-- ---------- GAGG|--AA| CGU|--UCA| CA-GACU-A| 2521 -AGU|GGA-A --G-UG|G|G UGGA------ ---------- -(cguucgcc gc-------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---UCUGCU- |UAA-GA-UA |UA-GUC|G| -|GG-----| -----|cccc uugg------ 2761 ----(-GAAA ---------- )--------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---------- ---------- 2881 --|-----cu aa--g-g-g- g|-------- --|---guga guacacugcu c-gaaauuca 2941 aacuugaacg ugucucggau ---------- -ggcgcuuau guu--agaa- uuuugagacu 3001 gucaacugcc ucgugguuug acagcuc--- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---------- ---------- 3121 ---------- ---------- ---------- ---------- ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ---------- ---------- ---------- ---------- ---------- ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- ---------- 4021 ---------- ---------- ---------- ---------- ---------- ---------- 4081 ---------- ---------- ---------- ---------- ---------- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- ---------- ---------- ---------- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ----uuaaa| -----AC|G- -||uuc-cgu agguga| // LOCUS Art.cl.1.1 4557 bp RNA RNA 04-APR-1998 DEFINITION Arthrobotrys cladodes.; . ACCESSION U51945 KEYWORDS . SOURCE Arthrobotrys cladodes. ORGANISM Arthrobotrys cladodes. REFERENCE 1 (bases 1 to 995) AUTHORS Liou,G.Y. and Tzean,S.S. TITLE nematode-trapping fungi based on rDNA sequences Phylogeny of the genus Arthrobotrys and allied JOURNAL Mycologia 89 (6), 876-884 (1997) STANDARD No information REFERENCE 2 (bases 1 to 995) AUTHORS Tzean,S. TITLE Direct Submission JOURNAL Submitted (21-MAR-1996) Shean-shong Tzean, National Taiwan University, Plant Pathology and Entomology, 1, Roosevelt Rd. Sec. 4, Taipei, Taiwan 107, Republic of China STANDARD No information COMMENTS Sequence information (bases 1 to 4557) Corresponding GenBank entry: U51945 ------------------------ LOCUS ACU51945 995 bp DNA PLN 04-APR-1998 DEFINITION Arthrobotrys cladodes isolate CCRC 32697 (=CBS 433.81) internal transcribed spacer 1, 5.8S ribosomal RNA gene; and internal transcribed spacer 2, complete sequence. ACCESSION U51945 NID g2951986 VERSION U51945.1 GI:2951986 KEYWORDS . SOURCE Arthrobotrys cladodes. ORGANISM Arthrobotrys cladodes Eukaryota; Fungi; Ascomycota; anamorphic Ascomycota; Arthrobotrys. REFERENCE 1 (bases 1 to 995) AUTHORS Liou,G.Y. and Tzean,S.S. TITLE Phylogeny of the genus Arthrobotrys and allied nematode-trapping fungi based on rDNA sequences JOURNAL Mycologia 89 (6), 876-884 (1997) REFERENCE 2 (bases 1 to 995) AUTHORS Tzean,S. TITLE Direct Submission JOURNAL Submitted (21-MAR-1996) Shean-shong Tzean, National Taiwan University, Plant Pathology and Entomology, 1, Roosevelt Rd. Sec. 4, Taipei, Taiwan 107, Republic of China FEATURES Location/Qualifiers source 1..995 /organism="Arthrobotrys cladodes" /isolate="CCRC 32697 (=CBS 433.81)" /db_xref="taxon:47294" /tissue_type="mycelium" intron 16..409 misc_RNA 439..631 /note="ITS1" /product="internal transcribed spacer 1" rRNA 632..787 /product="5.8S ribosomal RNA" misc_RNA 788..956 /note="ITS2" /product="internal transcribed spacer 2" BASE COUNT 262 a 254 c 248 g 231 t BASE COUNT 105 a 104 c 124 g 86 t 4138 others ORIGIN 1 |gucguaaca aggU||uu-- -------(-- --gaaguuug uucccuucca c-aggugacg 61 cucacgag-- ---------- --)------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- ---------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 -------|-- ---aa|Gccu u---|----- ---------- ---|UGUga- ---------- 781 -cccc(gcaa --)gg-gg-- ---------u acccgccgcg acuguaaaga auggaaugug 841 gguauuaaa- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 ------ucGC A|--A----- -----|GUC- AG-------- C--------- ---------- 1021 --(cgc---- ---------- ---------- ---------c ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 ---------- ---------- ---------- ---------- ---------- ---------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- ---------- -)-------- ---------- 1561 ---------- ---------- ---------- ---------- ---------- ---------- 1621 ---------G --C--UGGC| --AA|CACU- U-U-C|GAAU |UG--C-GGG |AACA----| 1681 C-CC------ ---------- ---------- -|U------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- --------AA AG|------c 1801 cca------- cc-uc|U-AC C|-------- ---------- ---------- ---------- 1861 ---|AAC-C- AGcC-U---- ---GA-(GAA A--------- ---------- ---------- 1921 ---------- -)-UCc--AG --C-U-G-G- G-G|----|c ccg-u-g-u- (uaaca---- 1981 ---------- --------)- gc-a-c-gg- g|-------a aa-u|GGU-C AUA-Au-ga- 2041 ggu-g-gg-| -auag----- -------guc agcc------ ---------- ---uuucc-- 2101 ---------- --gg-uuggc -auc-----a u--------- ---------- ---------- 2161 ---------- ---------- ---------- --GGA|-CAA -|UC-CGCA| GCC|-AAg-- 2221 |UCCC----- ------(--- ---------- ---------- ---------- ---------- 2281 ---------- ----)|-|U| AA----|ggu cc-------- ---------- ---------- 2341 (a-gcu-g-- ---------- ---------- ---------- ---------- ---------- 2401 -------)-- ---------- ---------- ---------- ---------- -------|-- 2461 ------g-gg cu-|a|c|-- ---------- GGGA|--AA| GGU|--UCA| CA-GACU-A| 2521 -GGU|GGA-A --G-UG|G|g uuggu----- ---------- -(ucagc--- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 --accaacU- |UAA-GA-UA |UA-GUC|G| -|GG-----| -----|cucu gcgc------ 2761 ----(-GAAA ---------- )--------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---------- ---------- 2881 --------gc gg--a-g-g- g|-------- --|-gagu-- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---------- ---------- 3121 ---------- ---------- ---------- ---------- ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ---------- ---------- ---------- ---------- ---------- ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- ---------- 4021 ---------- ---------- ---------- ---------- ---------- ---------- 4081 ---------- ---------- ---------- ---------- ---------- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- ---------- ---------- ---------- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ----ca---| -----CU|G- -||uuc-cgu agguga| // LOCUS Art.s.1.1 4557 bp RNA RNA 04-APR-1998 DEFINITION Arthrobotrys superba.; . ACCESSION U51949 KEYWORDS . SOURCE Arthrobotrys superba. ORGANISM Arthrobotrys superba. REFERENCE 1 (bases 1 to 1895) AUTHORS Liou,G.Y. and Tzean,S.S. TITLE nematode-trapping fungi based on rDNA sequences Phylogeny of the genus Arthrobotrys and allied JOURNAL Mycologia 89 (6), 876-884 (1997) STANDARD No information REFERENCE 2 (bases 1 to 1895) AUTHORS Tzean,S. TITLE Direct Submission JOURNAL Submitted (21-MAR-1996) Shean-shong Tzean, National Taiwan University, Plant Pathology and Entomology, 1, Roosevelt Rd. Sec. 4, Taipei, Taiwan 107, Republic of China STANDARD No information COMMENTS Sequence information (bases 1 to 4557) Corresponding GenBank entry: U51949 ------------------------ LOCUS ASU51949 1895 bp DNA PLN 04-APR-1998 DEFINITION Arthrobotrys superba internal transcribed spacer 1, 5.8S ribosomal RNA gene; and internal transcribed spacer 2, complete sequence. ACCESSION U51949 NID g2951993 VERSION U51949.1 GI:2951993 KEYWORDS . SOURCE Arthrobotrys superba. ORGANISM Arthrobotrys superba Eukaryota; Fungi; Ascomycota; anamorphic Ascomycota; Arthrobotrys. REFERENCE 1 (bases 1 to 1895) AUTHORS Liou,G.Y. and Tzean,S.S. TITLE Phylogeny of the genus Arthrobotrys and allied nematode-trapping fungi based on rDNA sequences JOURNAL Mycologia 89 (6), 876-884 (1997) REFERENCE 2 (bases 1 to 1895) AUTHORS Tzean,S. TITLE Direct Submission JOURNAL Submitted (21-MAR-1996) Shean-shong Tzean, National Taiwan University, Plant Pathology and Entomology, 1, Roosevelt Rd. Sec. 4, Taipei, Taiwan 107, Republic of China FEATURES Location/Qualifiers source 1..1895 /organism="Arthrobotrys superba" /isolate="CCRC 32698 (=CBS 109.52)" /db_xref="taxon:47237" /tissue_type="mycelium" intron 16..1309 misc_RNA 1339..1531 /note="ITS1" /product="internal transcribed spacer 1" rRNA 1532..1687 /product="5.8S ribosomal RNA" misc_RNA 1688..1858 /note="ITS2" /product="internal transcribed spacer 2" BASE COUNT 503 a 449 c 465 g 478 t BASE COUNT 342 a 299 c 341 g 336 t 3239 others ORIGIN 1 |gucguaaca aggU||uu-- -------(-- --gaaguaug au-ccuucca u-gggugacg 61 cucacgag-- ---------- --)------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- ---------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 -------|-- ---aa|Gccu u---|----- ---------- ---|UGUgg- ---------- 781 -cccc(gcaa --)gg-gg-- ---------u accugccgcg acuguaaaaa augg-augug 841 gguauuaaa- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 ------ucGC A|--A----- -----|GUC- AG-------- C--------- ---------- 1021 --(cua---- ---------- ---------- ---------u a--------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 ---------- ---------- ---------- ---------- ---------- ---------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- ---------- -)-------- ---------- 1561 ---------- ---------- ---------- ---------- ---------- ---------- 1621 ---------G --C--UGGC| --AA|CAC-- U-U-C|GAAU |UG--C-GGG |AACA----| 1681 C-CC------ ---------- ---------- -|U------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- --------AA AG|------c 1801 cca------- cc-uc|U-AC C|-------- ---------- ---------- ---------- 1861 ---|AAC-C- AG-C-C---- -G-GG-(GAA A--------- ---------- ---------- 1921 ---------- -)-UCC--GG --U-U-G-G- G-G|----|c cug-u-g-u- (uaaca---- 1981 ---------- --------)- gc-a-u-ag- a|-------u aa--|GGU-A AUA-Au-ga- 2041 ggu-g-gg-| -auac----- -------guc agc------- ---------- ---uuuca-- 2101 ---------- ---g-uugac -aau-----a u--------- ---------- ---------- 2161 ---------- ---------- ---------- --GGG|-CAA -|UC-CGCA| GCC|-AAg-- 2221 |UCCC----- ------(--- ---------- ---------- ---------- ---------- 2281 ---------- ----)|-|U| AA----|ggu cc-------- ---------- ---------- 2341 (u-gcu---- ---------- ---------- ---------- ---------- ---------- 2401 -------)-- ---------- ---------- ---------- ---------- -------|-- 2461 ------g-gg cu-|a|u|-- ---------- GGGA|--AA| GGU|--UCA| CA-GACU-A| 2521 -GGU|GGA-A --G-UG|G|g ucuggguc-- ---------- -(ugag---- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------g 2701 accuaggcU- |UAA-GA-UA |UA-GUC|G| -|GG-----| -----|cugu uugc------ 2761 ----(-GAGA ---------- )--------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---------- ---------- 2881 --------gu aa--a-u-g- g|-------- --|-gaguca caaugcuaca acuugacuug 2941 accgagcaug gcuugaaggg cuaagguugg ggacugugga auucaaguau ucaucagcua 3001 agaagugugu ugaaacuuac cacaaccuuu aacucuucag gcaccucggu cuucgucccu 3061 cugccuaaca acucaauguc acggccgaau uuuaccucag cgcaauugcg cgcug--cgg 3121 uuaaacaaau auucaacgca ccuggcuuca agcuugccaa cccucaucuu accaaagaug 3181 agguggcgaa cuugaagcug aguauaacuu ggccauugga caagccaguu uacucuccuu 3241 augcugcuac aaagaaggau ggcuacuccc aggugcgcuc ugccgccuug ggagguaaua 3301 aguauuacac ccaccguguc acguacuggc aauuuuacgg uguggacccu gcugagaaag 3361 acgucucuca uacccucuau guuaggguca aaaacaagcc gaaacauaaa ccccgucuuc 3421 cuggcggccg agacuaauga uuacaaucag ucucgcaagg cuugcuuuuu guuuuucgau 3481 gaacuccuuc gggagcgagu cgagaaaaug gagaacccuu gucuuguagu augggaucca 3541 cuuggucugu auuccccacc gcacgauuuc gaggcguggg aaaucagggu acgaucaacc 3601 aauggguuau gccgcagacu ucauaaggau caguuguguu guguuuguug ggaugaaugg 3661 cuuguggauu augaggcaaa gagaaaggag cuuggagaac cccccgaacc ggaaacggag 3721 gaggaggugu uccagagacu cucuucgccc aauucuucac aggucugagu caaguuaguu 3781 uuuggguaau uuauuaaaau auaauucuaa auugugccuu aa-------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- ---------- 4021 ---------- ---------- ---------- ---------- ---------- ---------- 4081 ---------- ---------- ---------- ---------- ---------- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- ---------- ---------- ---------- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------| -----CC|G- -||uuc-cgu agguga| // LOCUS Art.br.1.1 4557 bp RNA RNA 04-APR-1998 DEFINITION Arthrobotrys brochopaga.; . ACCESSION U51950 KEYWORDS . SOURCE Arthrobotrys brochopaga. ORGANISM Arthrobotrys brochopaga. REFERENCE 1 (bases 1 to 963) AUTHORS Liou,G.Y. and Tzean,S.S. TITLE nematode-trapping fungi based on rDNA sequences Phylogeny of the genus Arthrobotrys and allied JOURNAL Mycologia 89 (6), 876-884 (1997) STANDARD No information REFERENCE 2 (bases 1 to 963) AUTHORS Tzean,S. TITLE Direct Submission JOURNAL Submitted (21-MAR-1996) Shean-shong Tzean, National Taiwan University, Plant Pathology and Entomology, 1, Roosevelt Rd. Sec. 4, Taipei, Taiwan 107, Republic of China STANDARD No information COMMENTS Sequence information (bases 1 to 4557) Corresponding GenBank entry: U51950 ------------------------ LOCUS ABU51950 963 bp DNA PLN 04-APR-1998 DEFINITION Arthrobotrys brochopaga internal transcribed spacer 1, 5.8S ribosomal RNA gene; and internal transcribed spacer 2, complete sequence. ACCESSION U51950 NID g2951984 VERSION U51950.1 GI:2951984 KEYWORDS . SOURCE Arthrobotrys brochopaga. ORGANISM Arthrobotrys brochopaga Eukaryota; Fungi; Ascomycota; Leotiales; Orbiliaceae; anamorphic Orbiliaceae; Arthrobotrys. REFERENCE 1 (bases 1 to 963) AUTHORS Liou,G.Y. and Tzean,S.S. TITLE Phylogeny of the genus Arthrobotrys and allied nematode-trapping fungi based on rDNA sequences JOURNAL Mycologia 89 (6), 876-884 (1997) REFERENCE 2 (bases 1 to 963) AUTHORS Tzean,S. TITLE Direct Submission JOURNAL Submitted (21-MAR-1996) Shean-shong Tzean, National Taiwan University, Plant Pathology and Entomology, 1, Roosevelt Rd. Sec. 4, Taipei, Taiwan 107, Republic of China FEATURES Location/Qualifiers source 1..963 /organism="Arthrobotrys brochopaga" /isolate="CCRC 32702 (=CBS 218.61)" /db_xref="taxon:47238" /tissue_type="mycelium" intron 16..406 misc_RNA 436..605 /note="ITS1" /product="internal transcribed spacer 1" rRNA 606..761 /product="5.8S ribosomal RNA" misc_RNA 762..924 /note="ITS2" /product="internal transcribed spacer 2" BASE COUNT 249 a 224 c 246 g 244 t BASE COUNT 112 a 90 c 119 g 95 t 4141 others ORIGIN 1 |gucguaaca aggU||uu-- -------(-- --gaaguaag auc-guucca c-aggugacg 61 cuuaugag-- ---------- --)------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- ---------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 -------|-- ---aa|Gccu u---|----- ---------- ---|UGUgg- ---------- 781 -cccu(gcaa --)ag-gg-- ---------u accugccgcg acuauaaaca a-agaaugug 841 gguauuaaa- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 ------ucGC A|--A----- -----|GUC- AG-------- Cu-------- ---------- 1021 --(cug---- ---------- ---------- ---------g ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 ---------- ---------- ---------- ---------- ---------- ---------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- ---------- -)-------- ---------- 1561 ---------- ---------- ---------- ---------- ---------- ---------- 1621 -------a-G --C--UGGC| --CA|CACU- U-U-C|GAAU |UG--C-GGG |GACU----| 1681 C-CC------ ---------- ---------- -|U------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- --------AA AG|------c 1801 ucg------- au-uc|U-AC C|-------- ---------- ---------- ---------- 1861 ---|AAC-C- AG-c-C---- -G-GG-(GAA A--------- ---------- ---------- 1921 ---------- -)-CUU--Gu --C-U-G-G- G-G|----|c cga-u-g-u- (uaaca---- 1981 ---------- --------)- gc-a-u-ug- g|-------g ua-u|GGU-A ACA-Ac-ga- 2041 aga-g-ag-| -aua------ -------ugc ugg------- ---------- ---cuug--- 2101 ---------- ---c-cagcg -aa------a u--------- ---------- ---------- 2161 ---------- ---------- ---------- --GGG|-UAA -|UC-CGCA| GCC|-AAg-- 2221 |UCCC----- ------(--- ---------- ---------- ---------- ---------- 2281 ---------- ----)|-|U| AA----|agc gu-------- ---------- ---------- 2341 (u-gcu-uc- ---------- ---------- ---------- ---------- ---------- 2401 -------)-- ---------- ---------- ---------- ---------- -------|-- 2461 ------a-cg cc-|a|u|-- ---------- GGGA|--AA| GGU|--CCA| CA-GACU-A| 2521 -AGU|GGA-A --G-UG|G|g uugaac---- ---------- -(gauc---- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 -guucagcU- |UAA-GA-UA |UA-GUC|G| -|GG-----| -----|cccu gauu------ 2761 ----(-GAAA ---------- )--------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---------- ---------- 2881 --------ga uc-ug-g-g- g|-------- --|-agu--- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---------- ---------- 3121 ---------- ---------- ---------- ---------- ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ---------- ---------- ---------- ---------- ---------- ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- ---------- 4021 ---------- ---------- ---------- ---------- ---------- ---------- 4081 ---------- ---------- ---------- ---------- ---------- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- ---------- ---------- ---------- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ----ca---| -----CU|G- -||uuc-cgu agguga| // LOCUS Art.p.1.1 4557 bp RNA RNA 04-APR-1998 DEFINITION Arthrobotrys polycephala.; . ACCESSION U51951 KEYWORDS . SOURCE Arthrobotrys polycephala. ORGANISM Arthrobotrys polycephala. REFERENCE 1 (bases 1 to 978) AUTHORS Liou,G.Y. and Tzean,S.S. TITLE Phylogeny of the genus Arthrobotrys and allied nematode-trapping fungi based on rDNA sequences JOURNAL Mycologia 89 (6), 876-884 (1997) STANDARD No information REFERENCE 2 (bases 1 to 978) AUTHORS Tzean,S. TITLE Direct Submission JOURNAL Submitted (21-MAR-1996) Shean-shong Tzean, National Taiwan University, Plant Pathology and Entomology, 1, Roosevelt Rd. Sec. 4, Taipei, Taiwan 107, Republic of China STANDARD No information COMMENTS Sequence information (bases 1 to 4557) Corresponding GenBank entry: U51951 ------------------------ LOCUS APU51951 978 bp DNA PLN 04-APR-1998 DEFINITION Arthrobotrys polycephala internal transcribed spacer 1, 5.8S ribosomal RNA gene; and internal transcribed spacer 2, complete sequence. ACCESSION U51951 NID g2951992 VERSION U51951.1 GI:2951992 KEYWORDS . SOURCE Arthrobotrys polycephala. ORGANISM Arthrobotrys polycephala Eukaryota; Fungi; Ascomycota; anamorphic Ascomycota; Arthrobotrys. REFERENCE 1 (bases 1 to 978) AUTHORS Liou,G.Y. and Tzean,S.S. TITLE Phylogeny of the genus Arthrobotrys and allied nematode-trapping fungi based on rDNA sequences JOURNAL Mycologia 89 (6), 876-884 (1997) REFERENCE 2 (bases 1 to 978) AUTHORS Tzean,S. TITLE Direct Submission JOURNAL Submitted (21-MAR-1996) Shean-shong Tzean, National Taiwan University, Plant Pathology and Entomology, 1, Roosevelt Rd. Sec. 4, Taipei, Taiwan 107, Republic of China FEATURES Location/Qualifiers source 1..978 /organism="Arthrobotrys polycephala" /isolate="CCRC 32910 (=CBS 175.37)" /db_xref="taxon:47239" /tissue_type="mycelium" intron 16..410 misc_RNA 440..618 /note="ITS1" /product="internal transcribed spacer 1" rRNA 619..772 /product="5.8S ribosomal RNA" misc_RNA 773..939 /note="ITS2" /product="internal transcribed spacer 2" BASE COUNT 266 a 245 c 245 g 222 t BASE COUNT 112 a 101 c 125 g 82 t 4137 others ORIGIN 1 |gucguaaca aggU||uu-- -------(-- --gaaguaag uu-ccuucca u-aggugacg 61 cuuaugag-- ---------- --)------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- ---------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 -------|-- ---aa|Gccu u---|----- ---------- ---|UGUgg- ---------- 781 -cccc(gcaa --)gg-gg-- ---------u acccgccgcg acuguaaaga augaaa-gca 841 gguauuaaa- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 ------ucGC A|--A----- -----|GUC- GG-------- Cu-c------ ---------- 1021 --(guu---- ---------- ---------- ---------c a--------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 ---------- ---------- ---------- ---------- ---------- ---------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- ---------- -)-------- ---------- 1561 ---------- ---------- ---------- ---------- ---------- ---------- 1621 ------ga-G --C--CGGC| --CA|CACU- U-U-C|GAAU |UG--C-GGG |GAUA----| 1681 C-CC------ ---------- ---------- -|U------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- --------AA AG|------c 1801 ccaa------ cu-gc|U-AC C|-------- ---------- ---------- ---------- 1861 ---|AAC-C- GG-U-C---- -A-GG-(GAA A--------- ---------- ---------- 1921 ---------- -)-UCU--GA -uU-C-G-G- G-G|----|c cug-u-g-c- (uaaca---- 1981 ---------- --------)- cc-a-c-ag- g|-------g ua-a|GGU-A AUA-Au-gc- 2041 guu-g-gg-| -auaa----- -------gcc ggc------- ---------- ---uag---- 2101 ---------- ---g-ucagc -ac------a u--------- ---------- ---------- 2161 ---------- ---------- ---------- --GGG|-CAA -|UC-CGCA| GCC|-AAg-- 2221 |UCCC----- ------(--- ---------- ---------- ---------- ---------- 2281 ---------- ----)|-|U| AA----|ggc ---------- ---------- ---------- 2341 (c-ccu-cgg a--------- ---------- ---------- ---------- ---------- 2401 -------)-- ---------- ---------- ---------- ---------- -------|-- 2461 ---------g gu-|a|c|-- ---------- GGGA|--AA| GGU|---CA| CA-GACU-A| 2521 -AGU|GGA-A --G-UG|G|g cucc------ ---------- -(agaucac- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---ggggcU- |UAA-GA-UA |UA-GUC|G| -|GG-----| -----|cugu uugc------ 2761 ----(-GAGA ---------- )--------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---------- ---------- 2881 --------gc ga--a-c-g- g|-------- --|-aagu-- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---------- ---------- 3121 ---------- ---------- ---------- ---------- ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ---------- ---------- ---------- ---------- ---------- ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- ---------- 4021 ---------- ---------- ---------- ---------- ---------- ---------- 4081 ---------- ---------- ---------- ---------- ---------- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- ---------- ---------- ---------- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---cacaa-| -----CC|A- -||uuc-cgg agguga| // LOCUS Art.cl.2.1 4557 bp RNA RNA 04-APR-1998 DEFINITION Arthrobotrys cladodes.; . ACCESSION U51952 KEYWORDS . SOURCE Arthrobotrys cladodes. ORGANISM Arthrobotrys cladodes. REFERENCE 1 (bases 1 to 995) AUTHORS Liou,G.Y. and Tzean,S.S. TITLE Phylogeny of the genus Arthrobotrys and allied nematode-trapping fungi based on rDNA sequences JOURNAL Mycologia 89 (6), 876-884 (1997) STANDARD No information REFERENCE 2 (bases 1 to 995) AUTHORS Tzean,S. TITLE Direct Submission JOURNAL Submitted (21-MAR-1996) Shean-shong Tzean, National Taiwan University, Plant Pathology and Entomology, 1, Roosevelt Rd. Sec. 4, Taipei, Taiwan 107, Republic of China STANDARD No information COMMENTS Sequence information (bases 1 to 4557) Corresponding GenBank entry: U51952 ------------------------ LOCUS ACU51952 995 bp DNA PLN 04-APR-1998 DEFINITION Arthrobotrys cladodes isolate CCRC 32697 (=CBS 433.81) internal transcribed spacer 1, 5.8S ribosomal RNA gene; and internal transcribed spacer 2, complete sequence. ACCESSION U51952 NID g2951987 VERSION U51952.1 GI:2951987 KEYWORDS . SOURCE Arthrobotrys cladodes. ORGANISM Arthrobotrys cladodes Eukaryota; Fungi; Ascomycota; anamorphic Ascomycota; Arthrobotrys. REFERENCE 1 (bases 1 to 995) AUTHORS Liou,G.Y. and Tzean,S.S. TITLE Phylogeny of the genus Arthrobotrys and allied nematode-trapping fungi based on rDNA sequences JOURNAL Mycologia 89 (6), 876-884 (1997) REFERENCE 2 (bases 1 to 995) AUTHORS Tzean,S. TITLE Direct Submission JOURNAL Submitted (21-MAR-1996) Shean-shong Tzean, National Taiwan University, Plant Pathology and Entomology, 1, Roosevelt Rd. Sec. 4, Taipei, Taiwan 107, Republic of China FEATURES Location/Qualifiers source 1..995 /organism="Arthrobotrys cladodes" /isolate="CCRC 32697 (=CBS 433.81)" /db_xref="taxon:47294" /tissue_type="mycelium" intron 16..409 misc_RNA 439..631 /note="ITS1" /product="internal transcribed spacer 1" rRNA 632..787 /product="5.8S ribosomal RNA" misc_RNA 788..956 /note="ITS2" /product="internal transcribed spacer 2" BASE COUNT 262 a 254 c 248 g 231 t BASE COUNT 105 a 104 c 124 g 86 t 4138 others ORIGIN 1 |gucguaaca aggU||uu-- -------(-- --gaaguuug uucccuucca c-aggugacg 61 cucacgag-- ---------- --)------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- ---------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 -------|-- ---aa|Gccu u---|----- ---------- ---|UGUga- ---------- 781 -cccc(gcaa --)gg-gg-- ---------u acccgccgcg acuguaaaga auggaaugug 841 gguauuaaa- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 ------ucGC A|--A----- -----|GUC- AG-------- C--------- ---------- 1021 --(cgc---- ---------- ---------- ---------c ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 ---------- ---------- ---------- ---------- ---------- ---------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- ---------- -)-------- ---------- 1561 ---------- ---------- ---------- ---------- ---------- ---------- 1621 ---------G --C--UGGC| --AA|CACU- U-U-C|GAAU |UG--C-GGG |AACA----| 1681 C-CC------ ---------- ---------- -|U------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- --------AA AG|------c 1801 cca------- cc-uc|U-AC C|-------- ---------- ---------- ---------- 1861 ---|AAC-C- AG-C-c---- -u-GA-(GAA A--------- ---------- ---------- 1921 ---------- -)-UCc--aG --C-U-G-G- G-G|----|c ccg-u-g-u- (uaaca---- 1981 ---------- --------)- gc-a-c-gg- g|-------a aa-u|GGU-C AUA-Au-ga- 2041 ggu-g-gg-| -auag----- -------guc agcc------ ---------- ---uuucc-- 2101 ---------- --gg-uuggc -auc-----a u--------- ---------- ---------- 2161 ---------- ---------- ---------- --GGA|-CAA -|UC-CGCA| GCC|-AAg-- 2221 |UCCC----- ------(--- ---------- ---------- ---------- ---------- 2281 ---------- ----)|-|U| AA----|ggu cc-------- ---------- ---------- 2341 (a-gcu-g-- ---------- ---------- ---------- ---------- ---------- 2401 -------)-- ---------- ---------- ---------- ---------- -------|-- 2461 ------g-gg cu-|a|c|-- ---------- GGGA|--AA| GGU|--UCA| CA-GACU-A| 2521 -GGU|GGA-A --G-UG|G|g uuggu----- ---------- -(ucagc--- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 --accaacU- |UAA-GA-UA |UA-GUC|G| -|GG-----| -----|cucu gcgc------ 2761 ----(-GAAA ---------- )--------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---------- ---------- 2881 --------gc gg--a-g-g- g|-------- --|-gagu-- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---------- ---------- 3121 ---------- ---------- ---------- ---------- ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ---------- ---------- ---------- ---------- ---------- ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- ---------- 4021 ---------- ---------- ---------- ---------- ---------- ---------- 4081 ---------- ---------- ---------- ---------- ---------- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- ---------- ---------- ---------- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ----ca---| -----CU|G- -||uuc-cgu agguga| // LOCUS Art.cy.1.1 4557 bp RNA RNA 02-JUL-1998 DEFINITION Arthrobotrys cylindrospora.; . ACCESSION U51953 KEYWORDS . SOURCE Arthrobotrys cylindrospora. ORGANISM Arthrobotrys cylindrospora. REFERENCE 1 (bases 1 to 1022) AUTHORS Liou,G. and Tzean,S. TITLE The phylogeny of genus Arthrobotrys and some closely related nematode-trapping fungi JOURNAL Unpublished STANDARD No information REFERENCE 2 (bases 1 to 1022) AUTHORS Tzean,S. TITLE Direct Submission JOURNAL Submitted (21-MAR-1996) Shean-shong Tzean, National Taiwan University, Plant Pathology and Entomology, 1, Roosevelt Rd. Sec. 4, Taipei, Taiwan 107, Republic of China STANDARD No information COMMENTS Sequence information (bases 1 to 4557) Corresponding GenBank entry: U51953 ------------------------ LOCUS ACU51953 1022 bp DNA PLN 02-JUL-1998 DEFINITION Arthrobotrys cylindrospora internal transcribed spacer 1, 5.8S ribosomal RNA gene; and internal transcribed spacer 2, complete sequence. ACCESSION U51953 NID g3283041 VERSION U51953.1 GI:3283041 KEYWORDS . SOURCE Arthrobotrys cylindrospora. ORGANISM Arthrobotrys cylindrospora Eukaryota; Fungi; Ascomycota; anamorphic Ascomycota; Arthrobotrys. REFERENCE 1 (bases 1 to 1022) AUTHORS Liou,G. and Tzean,S. TITLE The phylogeny of genus Arthrobotrys and some closely related nematode-trapping fungi JOURNAL Unpublished REFERENCE 2 (bases 1 to 1022) AUTHORS Tzean,S. TITLE Direct Submission JOURNAL Submitted (21-MAR-1996) Shean-shong Tzean, National Taiwan University, Plant Pathology and Entomology, 1, Roosevelt Rd. Sec. 4, Taipei, Taiwan 107, Republic of China FEATURES Location/Qualifiers source 1..1022 /organism="Arthrobotrys cylindrospora" /isolate="CCRC 32913 (=CBS 325.70)" /db_xref="taxon:47240" /tissue_type="mycelium" intron 16..430 misc_RNA 460..644 /note="ITS1" /product="internal transcribed spacer 1" rRNA 645..800 /product="5.8S ribosomal RNA" misc_RNA 801..983 /note="ITS2" /product="internal transcribed spacer 2" BASE COUNT 279 a 238 c 258 g 247 t BASE COUNT 121 a 99 c 128 g 92 t 4117 others ORIGIN 1 |gucguaaca aggU||uu-- -------(-- --gaaguaag aauccuuccu uugggugacg 61 cuuaugag-- ---------- --)------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- ---------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 -------|-- ---aa|Gccu u---|----- ---------- ---|UGUgg- ---------- 781 -cccc(gcaa --)gg-gg-- ---------u auccgccgcg acuauaaaga augggaagcg 841 gguauuaaa- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 ------ucGC A|--A----- -----|GUC- GG-------- C--------- ---------- 1021 --(agc---- ---------- ---------- ---------c agcugugcu- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 ---------- ---------- ---------- ---------- ---------- ---------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- ---------- -)-------- ---------- 1561 ---------- ---------- ---------- ---------- ---------- ---------- 1621 ---------G --C--UGGC| --CA|CACU- U-U-C|GAAU |UG--C-GGG |AACA----| 1681 C-CC------ ---------- ---------- -|U------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- --------AA AG|------c 1801 acg------- cc-uc|U-AC C|-------- ---------- ---------- ---------- 1861 ---|AAC-C- GG-c-U---- uG-AA-(GAA A--------- ---------- ---------- 1921 ---------- -)-UUC--Ac --C-U-G-G- G-G|----|c caa-u-g-a- (uaacg---- 1981 ---------- --------)- ac-a-u-ug- g|g------u aa--|GGU-A AGA-Au-ga- 2041 ggu-u-ug-| -auga----- -------gaa cc-------- ---------- ---gcuau-- 2101 ---------- -----gguuu -gaa-----a u--------- ---------- ---------- 2161 ---------- ---------- ---------- --GGG|-CAA -|UC-CGCA| GCC|-AA--- 2221 |CCCC----- ------(--- ---------- ---------- ---------- ---------- 2281 ---------- ----)|-|U| AA----|ggc g--------- ---------- ---------- 2341 (a-guc-c-- ---------- ---------- ---------- ---------- ---------- 2401 -------)-- ---------- ---------- ---------- ---------- -------|-- 2461 --------ug cu-|a|u|-- ---------- GGGA|--GA| GGU|--UCA| CA-GACU-A| 2521 -AGU|GGA-A --G-UG|G|g cugg------ ---------- -(auuu---- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---ccagcU- |UAA-GA-UA |UA-GUC|G| -|GG-----| -----|ccug gcgc------ 2761 ----(-GAAA ---------- )--------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---------- ---------- 2881 --------gc gc-cc-g-g- g|-------- --|aaagguc acagaaaucg uaacaaaa-- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---------- ---------- 3121 ---------- ---------- ---------- ---------- ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ---------- ---------- ---------- ---------- ---------- ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- ---------- 4021 ---------- ---------- ---------- ---------- ---------- ---------- 4081 ---------- ---------- ---------- ---------- ---------- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- ---------- ---------- ---------- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------| -----CC|G- -||uuc-cgu agguga| // LOCUS Art.bo.1.1 4557 bp RNA RNA 04-APR-1998 DEFINITION Arthrobotrys botryospora.; . ACCESSION U51955 KEYWORDS . SOURCE Arthrobotrys botryospora. ORGANISM Arthrobotrys botryospora. REFERENCE 1 (bases 1 to 1028) AUTHORS Liou,G.Y. and Tzean,S.S. TITLE nematode-trapping fungi based on rDNA sequences Phylogeny of the genus Arthrobotrys and allied JOURNAL Mycologia 89 (6), 876-884 (1997) STANDARD No information REFERENCE 2 (bases 1 to 1028) AUTHORS Tzean,S. TITLE Direct Submission JOURNAL Submitted (21-MAR-1996) Shean-shong Tzean, National Taiwan University, Plant Pathology and Entomology, 1, Roosevelt Rd. Sec. 4, Taipei, Taiwan 107, Republic of China STANDARD No information COMMENTS Sequence information (bases 1 to 4557) Corresponding GenBank entry: U51955 ------------------------ LOCUS ABU51955 1028 bp DNA PLN 04-APR-1998 DEFINITION Arthrobotrys botryospora internal transcribed spacer 1, 5.8S ribosomal RNA gene; and internal transcribed spacer 2, complete sequence. ACCESSION U51955 NID g2951985 VERSION U51955.1 GI:2951985 KEYWORDS . SOURCE Arthrobotrys botryospora. ORGANISM Arthrobotrys botryospora Eukaryota; Fungi; Ascomycota; anamorphic Ascomycota; Arthrobotrys. REFERENCE 1 (bases 1 to 1028) AUTHORS Liou,G.Y. and Tzean,S.S. TITLE Phylogeny of the genus Arthrobotrys and allied nematode-trapping fungi based on rDNA sequences JOURNAL Mycologia 89 (6), 876-884 (1997) REFERENCE 2 (bases 1 to 1028) AUTHORS Tzean,S. TITLE Direct Submission JOURNAL Submitted (21-MAR-1996) Shean-shong Tzean, National Taiwan University, Plant Pathology and Entomology, 1, Roosevelt Rd. Sec. 4, Taipei, Taiwan 107, Republic of China FEATURES Location/Qualifiers source 1..1028 /organism="Arthrobotrys botryospora" /isolate="CCRC 32906 (=CBS 321.83)" /db_xref="taxon:47242" /tissue_type="mycelium" intron 16..443 misc_RNA 473..664 /note="ITS1" /product="internal transcribed spacer 1" rRNA 665..820 /product="5.8S ribosomal RNA" misc_RNA 821..989 /note="ITS2" /product="internal transcribed spacer 2" BASE COUNT 272 a 263 c 264 g 229 t BASE COUNT 115 a 109 c 138 g 91 t 4104 others ORIGIN 1 |gucguaaca aggU||uu-- -------(-- --gaaguuug au-ccuucca u-gggugacg 61 cucacgag-- ---------- --)------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- ---------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 -------|-- ---aa|Gccu u---|----- ---------- ---|UGUgg- ---------- 781 -cccu(gcaa --)ag-gg-- ---------u acccgccacg acaguaaaca aug--agca- 841 gguauuaaa- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 ------ucGC A|--A----- -----|GUC- AG-------- Cg-guc---- ---------- 1021 --(agu---- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 ---------- ---------- ---------- ---------- ---------- ---------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- ---------- -)-------- ---------- 1561 ---------- ---------- ---------- ---------- ---------- ---------- 1621 -----ggccG --C--UGGC| --AA|CACU- U-U-C|GAAU |UG--C-GGG |GACC----| 1681 U-CC------ ---------- ---------- -|U------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- --------AA AG|------c 1801 cca------- cc-uc|U-AC C|-------- ---------- ---------- ---------- 1861 ---|AAC-C- GG-U-C---- -G-GA-(GAA A--------- ---------- ---------- 1921 ---------- -)-UCC--GG --U-C-G-G- G-G|----|c cug-u-g-u- (uaacc---- 1981 ---------- --------)- gc-a-c-ag- g|-------a ga-a|GGU-A ACA-Au-gg- 2041 ggu-g-gg-| -auac----- -------gcc agcc------ ---------- ---cuc---- 2101 ---------- --gg-uuggc -auc-----g u--------- ---------- ---------- 2161 ---------- ---------- ---------- --GGA|-AGA -|UCcCGCA| GCC|-AAg-- 2221 |UCC------ ------(--- ---------- ---------- ---------- ---------- 2281 ---------- ----)|-|U| AA----|ggc cc-------- ---------- ---------- 2341 (a-acc---- ---------- ---------- ---------- ---------- ---------- 2401 -------)-- ---------- ---------- ---------- ---------- -------|-- 2461 ------g-gg cu-|a|c|-- ---------- GGAA|--AA| GGU|--UCA| CA-GACU-A| 2521 -AGU|GGA-A --G-UG|G|g ccuggguu-- ---------- -(ugag---- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------a 2701 acucgggcU- |UAA-GA-UA |UA-GUC|G| -|GU-----| -----|cugu ucgc------ 2761 ----(-GAGA ---------- )--------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---------- ---------- 2881 --------gc ga--a-c-g- g|-------- --|-gaguca cagugcaaaa uuuugggaug 2941 ggacucuaa- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---------- ---------- 3121 ---------- ---------- ---------- ---------- ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ---------- ---------- ---------- ---------- ---------- ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- ---------- 4021 ---------- ---------- ---------- ---------- ---------- ---------- 4081 ---------- ---------- ---------- ---------- ---------- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- ---------- ---------- ---------- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------| -----AC|G- -||uuc-cgu agguga| // LOCUS Dac.g.1.1 4557 bp RNA RNA 04-APR-1998 DEFINITION Dactylella gampsospora.; . ACCESSION U51960 KEYWORDS . SOURCE Dactylella gampsospora. ORGANISM Dactylella gampsospora. REFERENCE 1 (bases 1 to 996) AUTHORS Liou,G.Y. and Tzean,S.S. TITLE nematode-trapping fungi based on rDNA sequences Phylogeny of the genus Arthrobotrys and allied JOURNAL Mycologia 89 (6), 876-884 (1997) STANDARD No information REFERENCE 2 (bases 1 to 996) AUTHORS Tzean,S. TITLE Direct Submission JOURNAL Submitted (21-MAR-1996) Shean-shong Tzean, National Taiwan University, Plant Pathology and Entomology, 1, Roosevelt Rd. Sec. 4, Taipei, Taiwan 107, Republic of China STANDARD No information COMMENTS Sequence information (bases 1 to 4557) Corresponding GenBank entry: U51960 ------------------------ LOCUS DGU51960 996 bp DNA PLN 04-APR-1998 DEFINITION Dactylella gampsospora internal transcribed spacer 1, 5.8S ribosomal RNA gene; and internal transcribed spacer 2, complete sequence. ACCESSION U51960 NID g2952001 VERSION U51960.1 GI:2952001 KEYWORDS . SOURCE Dactylella gampsospora. ORGANISM Dactylella gampsospora Eukaryota; Fungi; Ascomycota; anamorphic Ascomycota; Dactylella. REFERENCE 1 (bases 1 to 996) AUTHORS Liou,G.Y. and Tzean,S.S. TITLE Phylogeny of the genus Arthrobotrys and allied nematode-trapping fungi based on rDNA sequences JOURNAL Mycologia 89 (6), 876-884 (1997) REFERENCE 2 (bases 1 to 996) AUTHORS Tzean,S. TITLE Direct Submission JOURNAL Submitted (21-MAR-1996) Shean-shong Tzean, National Taiwan University, Plant Pathology and Entomology, 1, Roosevelt Rd. Sec. 4, Taipei, Taiwan 107, Republic of China FEATURES Location/Qualifiers source 1..996 /organism="Dactylella gampsospora" /isolate="CCRC 32871 (=CBS 127.83)" /db_xref="taxon:47295" /tissue_type="mycelium" intron 16..414 misc_RNA 444..637 /note="ITS1" /product="internal transcribed spacer 1" rRNA 638..791 /product="5.8S ribosomal RNA" misc_RNA 792..957 /note="ITS2" /product="internal transcribed spacer 2" BASE COUNT 274 a 248 c 238 g 236 t BASE COUNT 118 a 99 c 115 g 92 t 4133 others ORIGIN 1 |gucguaaca aggU||uu-- -------(-- --gaaguaag uuuccuucca u-aggugacg 61 cucacgag-- ---------- --)------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- ---------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 -------|-- ---aa|Gccu u---|----- ---------- ---|UGUgg- ---------- 781 -cccc(gcaa --)gg-gg-- ---------u accugccacg acuguaaaga augga-ugca 841 gguauuaaa- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 ------ucGC A|--A----- -----|GUC- AG-------- C--------- ---------- 1021 --(uag---- ---------- ---------- ---------c a--------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 ---------- ---------- ---------- ---------- ---------- ---------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- ---------- -)-------- ---------- 1561 ---------- ---------- ---------- ---------- ---------- ---------- 1621 ---------G --C--UGGC| --AA|CACU- U-U-U|GAAU |UG--ACGGG |GACA----| 1681 C-CC------ ---------- ---------- -|U------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- --------AA AG|------c 1801 cca------- cc-uc|U-AC C|-------- ---------- ---------- ---------- 1861 ---|AAC-C- AG-C-U---- -G-GA-(GAA A--------- ---------- ---------- 1921 ---------- -)-UCC--GG --U-U-G-G- G-G|----|c cug-u-g-u- (uaaca---- 1981 ---------- --------)- gc-a-c-ag- g|-------g ua-c|GGU-A ACA-Ac-ga- 2041 ggu-c-gg-| -auaa----- -------gcc ag-------- ---------- ---cccu--- 2101 ---------- -----cuggc -aca-----a u--------- ---------- ---------- 2161 ---------- ---------- ---------- --GGG|-UAA -|UC-CuCA| GCC|cAAg-- 2221 |UCCC----- ------(--- ---------- ---------- ---------- ---------- 2281 ---------- ----)|-|U| AA----|-uc uuuu------ ---------- ---------- 2341 (c-guu-cag a--------- ---------- ---------- ---------- ---------- 2401 -------)-- ---------- ---------- ---------- ---------- -------|-- 2461 ----aaa-ag ac-|a|u|-- ---------- GGGA|--AA| GGU|--UCA| CA-GACU-A| 2521 -AGU|GGA-A --G-UG|G|g uugg------ ---------- -(uuccugaa c--------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---ccaacU- |UAA-GA-UA |UA-GUC|G| -|GG-----| -----|cucu gugc------ 2761 ----(-GAAA ---------- )--------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---------- ---------- 2881 --------gc ag--a-g-a- g|-------- --|-gagu-- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---------- ---------- 3121 ---------- ---------- ---------- ---------- ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ---------- ---------- ---------- ---------- ---------- ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- ---------- 4021 ---------- ---------- ---------- ---------- ---------- ---------- 4081 ---------- ---------- ---------- ---------- ---------- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- ---------- ---------- ---------- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ----ca---| -----CU|G- -||uuc-cgu agguga| // LOCUS Dac.a.1.1 4557 bp RNA RNA 02-JUL-1998 DEFINITION Dactylella asthenopaga.; . ACCESSION U51962 KEYWORDS . SOURCE Dactylella asthenopaga. ORGANISM Dactylella asthenopaga. REFERENCE 1 (bases 1 to 1005) AUTHORS Liou,G. and Tzean,S. TITLE nematode-trapping fungi The phylogeny of genus Arthrobotrys and some closely related JOURNAL Unpublished STANDARD No information REFERENCE 2 (bases 1 to 1005) AUTHORS Tzean,S. TITLE Direct Submission JOURNAL Submitted (21-MAR-1996) Shean-shong Tzean, National Taiwan University, Plant Pathology and Entomology, 1, Roosevelt Rd. Sec. 4, Taipei, Taiwan 107, Republic of China STANDARD No information COMMENTS Sequence information (bases 1 to 4557) Corresponding GenBank entry: U51962 ------------------------- LOCUS DAU51962 1005 bp DNA PLN 02-JUL-1998 DEFINITION Dactylella asthenopaga internal transcribed spacer 1, 5.8S ribosomal RNA gene; and internal transcribed spacer 2, complete sequence. ACCESSION U51962 NID g3283043 VERSION U51962.1 GI:3283043 KEYWORDS . SOURCE Dactylella asthenopaga. ORGANISM Dactylella asthenopaga Eukaryota; Fungi; Ascomycota; anamorphic Ascomycota; Dactylella. REFERENCE 1 (bases 1 to 1005) AUTHORS Liou,G. and Tzean,S. TITLE The phylogeny of genus Arthrobotrys and some closely related nematode-trapping fungi JOURNAL Unpublished REFERENCE 2 (bases 1 to 1005) AUTHORS Tzean,S. TITLE Direct Submission JOURNAL Submitted (21-MAR-1996) Shean-shong Tzean, National Taiwan University, Plant Pathology and Entomology, 1, Roosevelt Rd. Sec. 4, Taipei, Taiwan 107, Republic of China FEATURES Location/Qualifiers source 1..1005 /organism="Dactylella asthenopaga" /isolate="CCRC 32938 (=CBS 917.85)" /db_xref="taxon:47258" /tissue_type="mycelium" intron 16..431 misc_RNA 461..630 /note="ITS1" /product="internal transcribed spacer 1" rRNA 631..786 /product="5.8S ribosomal RNA" misc_RNA 787..966 /note="ITS2" /product="internal transcribed spacer 2" BASE COUNT 285 a 225 c 228 g 267 t BASE COUNT 128 a 96 c 111 g 106 t 4116 others ORIGIN 1 |gucguaaca aggU||uu-- -------(-- --ga-uugag au-ccuucc- ----gugacg 61 cuuaugag-- ---------- --)------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- ---------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 -------|-- ---aa|Gccu u---|----- ---------- ---|UGUag- ---------- 781 -ccca(gcaa --)ug-gg-- --------uu acccgccgcg acuauaaaca a-gaauugug 841 gguauuaaa- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 ------u-GC A|--A----- -----|GUC- AG-------- C--------- ---------- 1021 --(-uu---- ---------- ---------- ---------a ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 ---------- ---------- ---------- ---------- ---------- ---------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- ---------- -)-------- ---------- 1561 ---------- ---------- ---------- ---------- ---------- ---------- 1621 ---------G --C--UGGC| --GA|CACU- U-U-C|GAAU |UG--C-GGG |AACA----| 1681 C-CU------ ---------- ---------- -|U------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- --------AA AG|------c 1801 caa------a uc-uc|C-AC C|-------- ---------- ---------- ---------- 1861 ---|AAC-C- AA-C-C---- -A-GG-(GAA A--------- ---------- ---------- 1921 ---------- -)-UCU--GC --U-U-G-G- G-G|----|c uca-u-g-c- (uaaca---- 1981 ---------- --------)- ac-a-u-ga- g|-------g ua-u|GGU-A AUA-Gc-ga- 2041 guu-u-gg-| -auauu---- ---------- ---------- ---------- ---------- 2101 ---------- ---------- -aca-----a u--------- ---------- ---------- 2161 ---------- ---------- ---------- --AGG|-CAA -|UC-CGCA| GCC|-AAg-- 2221 |UCCC----- ------(--- ---------- ---------- ---------- ---------- 2281 ---------- ----)|-|U| AA----|ggc a--------- ---------- ---------- 2341 (c-aau-u-- ---------- ---------- ---------- ---------- ---------- 2401 -------)-- ---------- ---------- ---------- ---------- -------|-- 2461 --------ug cu-|a|c|-- ---------- GGGA|--AA| GGU|--UCA| CA-GACU-A| 2521 -AGU|GGA-A --G-UG|G|g uugccuac-- ---------- -(uca----- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------g 2701 uaggcagcU- |UAA-GA-UA |UA-GUC|G| -|GG-----| -----|uucu guag------ 2761 ----(-GAAA ---------- )--------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---------- ---------- 2881 --------cu au--g-g-a- a|-------- --|-gaguca caugguggua gauguguccu 2941 ccacaacugc accaaacaug ucca|----- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---------- ---------- 3121 ---------- ---------- ---------- ---------- ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ---------- ---------- ---------- ---------- ---------- ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- ---------- 4021 ---------- ---------- ---------- ---------- ---------- ---------- 4081 ---------- ---------- ---------- ---------- ---------- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- ---------- ---------- ---------- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -----a---| -----CU|G- -||uuc-cgu agguga| // LOCUS Ste.c.1.2 4557 bp RNA RNA 28-JAN-191 DEFINITION Stephanoascus ciferrii. ACCESSION No information KEYWORDS No information. SOURCE Stephanoascus ciferrii. ORGANISM Stephanoascus ciferrii. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 4557) Corresponding GenBank entry: AB019362 LOCUS AB019362 2512 bp DNA PLN 15-APR-2000 DEFINITION Stephanoascus ciferrii gene for 18S rRNA, containing group I introns. ACCESSION AB019362 VERSION AB019362.1 GI:7576366 KEYWORDS 18S rRNA. SOURCE Stephanoascus ciferrii (strain:IFO 10918) DNA. ORGANISM Stephanoascus ciferrii Eukaryota; Fungi; Ascomycota; Saccharomycetes; Saccharomycetales; Dipodascaceae; Stephanoascus. REFERENCE 1 (bases 1 to 2512) AUTHORS Ueda,K. TITLE Identification of various group I introns within the 18S rDNA from the ascomycetous yeast Stephanoascus ciferrii JOURNAL Published Only in DataBase (2000) In press REFERENCE 2 (bases 1 to 2512) AUTHORS Ueda,K. TITLE Direct Submission JOURNAL Submitted (29-OCT-1998) to the DDBJ/EMBL/GenBank databases. Kumiko Ueda, Institute for Fermentation, Osaka, Yeast Section; 17-85, Juso-honmachi 2-chome, Yodogawaku, Osaka, Osaka 532-8686, Japan (E-mail:kumiueda@mb.infoweb.ne.jp, Tel:81-6-300-6337, Fax:81-6-300-6814) FEATURES Location/Qualifiers source 1..2512 /organism="Stephanoascus ciferrii" /strain="IFO 10918" /db_xref="taxon:44093" exon 1..1144 rRNA join(1..1144,1500..2102,2506..2512) /product="18S ribosomal RNA" intron 1145..1499 /note="group I intron" exon 1500..2102 intron 2103..2505 /note="group I intron" exon 2506..2512 BASE COUNT 712 a 495 c 621 g 684 t BASE COUNT 123 a 84 c 102 g 113 t 4135 others ORIGIN 1 |~ucguaaca aggU||uuc- -------(-- --cguauauc cauuauaugg agcaaguccu 61 uccguagagu acacuugcc- --)------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- ---------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 -------|-- --gaa|Gccu u---|----- ---------- ---|agca-- ---------- 781 -gccu(gaaa --)gg-gu-- ---------g auugcuaacg acucuaaa-- uaaaucaagc 841 uuucuuaaa- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 ------u-GC U|--A----- -----|GUC- AC-------- AC-------- ---------- 1021 --(uuu---- ---------- ---------- ---------u ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 ---------- ---------- ---------- ---------- ---------- ---------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- ---------- ---------- ---------- 1561 ---------- ---------- ---------- ---------- ---------- ---------- 1621 --------GU --G--UGGC| --CA|CGCU- G-C-C|AAAU |UG--C-GGG |GAAG----| 1681 C-CC------ ---------- ---------- -|U------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- --------AA AG|------A 1801 UC-------- UU-AC|C-AC C|-------- ---------- ---------- ---------- 1861 ---|AAG-C- UA-C-A---- -G-UC-(GAA A--------- ---------- ---------- 1921 ---------- -)-GGU--UG --U-A-G-U- G-G|----|c cga-g-c-g- (aaaag---- 1981 ---------- --------)- -c-c-c-ug- g|-------g ua-u|GGU-A AUA-GU-GU- 2041 AAG-A-U--| -augua---- ---------- ---------- ---------- ---------- 2101 ---------- ---------- -aca-----a u--------- ---------- ---------- 2161 ---------- ---------- ---------- --GGG|-UAA -|UC-UGCA| GCC|-AAg-- 2221 -UCC------ ------(--- ---------- ---------- ---------- ---------- 2281 ---------- ----)|-|U| AA----|guc u--------- ---------- ---------- 2341 (g-uaa-a-- ---------- ---------- ---------- ---------- ---------- 2401 -------)-- ---------- ---------- ---------- ---------- -------|-- 2461 --------ag au-|a|u|-- ---------- -GGA|-ucc| uGU|--UCA| CA-GGCC-A| 2521 -AAU|GGU-A --G-UG|G|g ugucuuu--- ---------- -(uu------ ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 aaagaugcu- |UAA-GA-UA |UG-GUC|G| -|GU------ -----|cugc cucu------ 2761 ----(-GAGA ---------- )--------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---------- ---------- 2881 --------ag ag--g-u-g- g|-------- --|-guaagu uacu------ ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---------- ---------- 3121 ---------- ---------- ---------- ---------- ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ---------- ---------- ---------- ---------- ---------- ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- ---------- 4021 ---------- ---------- ---------- ---------- ---------- ---------- 4081 ---------- ---------- ---------- ---------- ---------- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- ---------- ---------- ---------- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---cuauaca cguacaaaa| -----AC|G- -||uuc-cgu a~~~~~| // LOCUS Dac.co.1.1 4557 bp RNA RNA 04-APR-1998 DEFINITION Dactylella copepodii.; . ACCESSION U51964 KEYWORDS . SOURCE Dactylella copepodii. ORGANISM Dactylella copepodii. REFERENCE 1 (bases 1 to 989) AUTHORS Liou,G.Y. and Tzean,S.S. TITLE Phylogeny of the genus Arthrobotrys and allied nematode-trapping fungi based on rDNA sequences JOURNAL Mycologia 89 (6), 876-884 (1997) STANDARD No information REFERENCE 2 (bases 1 to 989) AUTHORS Tzean,S. TITLE Direct Submission JOURNAL Submitted (21-MAR-1996) Shean-shong Tzean, National Taiwan University, Plant Pathology and Entomology, 1, Roosevelt Rd. Sec. 4, Taipei, Taiwan 107, Republic of China STANDARD No information COMMENTS Sequence information (bases 1 to 4557) Corresponding GenBank entry: U51964 ------------------------ LOCUS DCU51964 989 bp DNA PLN 04-APR-1998 DEFINITION Dactylella copepodii internal transcribed spacer 1, 5.8S ribosomal RNA gene; and internal transcribed spacer 2, complete sequence. ACCESSION U51964 NID g2951997 VERSION U51964.1 GI:2951997 KEYWORDS . SOURCE Dactylella copepodii. ORGANISM Dactylella copepodii Eukaryota; Fungi; Ascomycota; anamorphic Ascomycota; Dactylella. REFERENCE 1 (bases 1 to 989) AUTHORS Liou,G.Y. and Tzean,S.S. TITLE Phylogeny of the genus Arthrobotrys and allied nematode-trapping fungi based on rDNA sequences JOURNAL Mycologia 89 (6), 876-884 (1997) REFERENCE 2 (bases 1 to 989) AUTHORS Tzean,S. TITLE Direct Submission JOURNAL Submitted (21-MAR-1996) Shean-shong Tzean, National Taiwan University, Plant Pathology and Entomology, 1, Roosevelt Rd. Sec. 4, Taipei, Taiwan 107, Republic of China FEATURES Location/Qualifiers source 1..989 /organism="Dactylella copepodii" /isolate="CCRC 33300 (=CBS 487.90)" /db_xref="taxon:47259" /tissue_type="mycelium" intron 15..407 misc_RNA 437..622 /note="ITS1" /product="internal transcribed spacer 1" rRNA 623..778 /product="5.8S ribosomal RNA" misc_RNA 779..950 /note="ITS2" /product="internal transcribed spacer 2" BASE COUNT 276 a 235 c 234 g 244 t BASE COUNT 114 a 97 c 115 g 91 t 4140 others ORIGIN 1 |gucguaaca aggU||u--- -------(-- --gaagu-aa gauccuucua c--agugaca 61 cuuacgag-- ---------- --)------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- ---------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 -------|-- ---aa|Gccu u---|----- ---------- ---|UGUgg- ---------- 781 -cccc(gcaa --)gg-gg-- ---------u accugccgcg acuauaaaca augcaa-gug 841 gguauuaaa- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 ------ucGC A|--A----- -----|GUC- AG-------- C--------- ---------- 1021 --(uuu---- ---------- ---------- ---------a ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 ---------- ---------- ---------- ---------- ---------- ---------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- ---------- -)-------- ---------- 1561 ---------- ---------- ---------- ---------- ---------- ---------- 1621 ---------G --C--UGGC| --CA|CACU- U-U-C|GAAU |UG--C-GGG |GAAA----| 1681 C-CC------ ---------- ---------- -|U------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- --------AA AG|------c 1801 uca------- -c-ca|U-AC C|-------- ---------- ---------- ---------- 1861 ---|AAC-C- AG-C-C---- -U-GG-(GAA A--------- ---------- ---------- 1921 ---------- -)-UCA--GG --U-U-G-G- G-G|----|c ccg-u-g-c- (uaacu---- 1981 ---------- --------)- cc-a-c-gg- g|-------a ua-u|GGU-A AUA-Au-gg- 2041 gau-g-ag-| -augua---- ---------- ---------- ---------- ---------- 2101 ---------- ---------- -aca-----a u--------- ---------- ---------- 2161 ---------- ---------- ---------- --GGG|-CAA -|UC-CGCA| GCC|-AAg-- 2221 |UCCC----- ------(--- ---------- ---------- ---------- ---------- 2281 ---------- ----)|-|U| AA----|ggu cu-------- ---------- ---------- 2341 (u-guc-c-- ---------- ---------- ---------- ---------- ---------- 2401 -------)-- ---------- ---------- ---------- ---------- -------|-- 2461 ------a-ga cu-|a|c|-- ---------- GGGA|--AA| GGU|--UCA| CA-GACU-A| 2521 -AGU|GGA-A --G-UG|G|g ccggag---- ---------- -(uuuguacc ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 -cuccggcU- |UAA-GA-UA |UA-GUC|G| -|GG-----| -----|cugc cugu------ 2761 ----(-GAGA ---------- )--------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---------- ---------- 2881 --------gc aa--g-u-g- g|-------- --|-gaaguc acaguugcac uucaaa---- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---------- ---------- 3121 ---------- ---------- ---------- ---------- ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ---------- ---------- ---------- ---------- ---------- ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- ---------- 4021 ---------- ---------- ---------- ---------- ---------- ---------- 4081 ---------- ---------- ---------- ---------- ---------- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- ---------- ---------- ---------- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------| -----CC|G- -||uuc-cgu agguga| // LOCUS Dac.h.1.1 4557 bp RNA RNA 04-APR-1998 DEFINITION Dactylella huisuniana.; . ACCESSION U51965 KEYWORDS . SOURCE Dactylella huisuniana. ORGANISM Dactylella huisuniana. REFERENCE 1 (bases 1 to 995) AUTHORS Liou,G.Y. and Tzean,S.S. TITLE nematode-trapping fungi based on rDNA sequences Phylogeny of the genus Arthrobotrys and allied JOURNAL Mycologia 89 (6), 876-884 (1997) STANDARD No information REFERENCE 2 (bases 1 to 995) AUTHORS Tzean,S. TITLE Direct Submission JOURNAL Submitted (21-MAR-1996) Shean-shong Tzean, National Taiwan University, Plant Pathology and Entomology, 1, Roosevelt Rd. Sec. 4, Taipei, Taiwan 107, Republic of China STANDARD No information COMMENTS Sequence information (bases 1 to 4557) Corresponding GenBank entry: U51965 ------------------------ LOCUS DHU51965 995 bp DNA PLN 04-APR-1998 DEFINITION Dactylella huisuniana internal transcribed spacer 1, 5.8S ribosomal RNA gene; and internal transcribed spacer 2, complete sequence. ACCESSION U51965 NID g2952002 VERSION U51965.1 GI:2952002 KEYWORDS . SOURCE Dactylella huisuniana. ORGANISM Dactylella huisuniana Eukaryota; Fungi; Ascomycota; anamorphic Ascomycota; Dactylella. REFERENCE 1 (bases 1 to 995) AUTHORS Liou,G.Y. and Tzean,S.S. TITLE Phylogeny of the genus Arthrobotrys and allied nematode-trapping fungi based on rDNA sequences JOURNAL Mycologia 89 (6), 876-884 (1997) REFERENCE 2 (bases 1 to 995) AUTHORS Tzean,S. TITLE Direct Submission JOURNAL Submitted (21-MAR-1996) Shean-shong Tzean, National Taiwan University, Plant Pathology and Entomology, 1, Roosevelt Rd. Sec. 4, Taipei, Taiwan 107, Republic of China FEATURES Location/Qualifiers source 1..995 /organism="Dactylella huisuniana" /isolate="CCRC 33444" /db_xref="taxon:47260" /tissue_type="mycelium" intron 16..410 misc_RNA 440..614