LOCUS E.coli 10775 bp RNA RNA 11-JAN-1980 DEFINITION Escherichia coli. ACCESSION No information KEYWORDS No information. SOURCE Escherichia coli. ORGANISM Escherichia coli. REFERENCE 1 AUTHORS No information JOURNAL E.coli:who:Published STANDARD No information COMMENTS Organism information Culture collection: ? Sequence information (bases 1 to 10775) Corresponding GenBank entry: J01695 Phylo:Eubacteria,Purple,gamma,3 BASE COUNT 762 a 639 c 912 g 591 t 7871 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- -----GGU-U AAGC------ -GA------- ---------- ---------- 241 ---------- ---------- ---------- -----CUAAG CGUACACGG- ----UGGAUG 301 |CCC--UGG| CAG-UCAG-A G|gcgaug-- ---------- ----AAGGA| -CGUG(-CUA 361 AUC------) U|GCGAUAA- GCGUCGG|UA A-GGU--(-- ---------- ---------- 421 GAUAUGA)-- ACCGUUAUAA CCGGCGA-UU UCCGAAU-GG G--------- -----(GAAA 481 )CCC|AGUGU GU(UUCG-)A CACACU---- AUCAUUAACU GA-------- -(AUCC-A)- 541 --------UA GGUUAAUGAG G--<------ ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- ---------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 ---------- ---------- ---------- ---------- ---------- ---------- 781 ---------- ---------- ---------- -------->- -----cGAAC |CGGGGGAAC 841 UGA(AACA)U CUAAGUA--- -CCCCG---- ---------- ---------- ---AGGAAAA 901 GAAAUC(-AA CC)GA-G-AU |UCC-CCCA- -GUAG-C(-G GCGA)GCGAA -CGGGGAGC- 961 -AGCCCA<-- ---------- ---------- ---------- ---------- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- --->------ 1201 ---gagccug aaucagugug uguguuagug gaaGCGUCU< ---------- ---------- 1261 ---------- ---------- ---------> (GGAA--)AG GCGC------ GC-|G(AUA) 1321 C--AGGG(UG ACAGC)CCCg ua--cacaaa aaugcacaug cugugagcuc g-<------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- >auGAGUAGG GCGGGA(--- --------ca 1561 cguggua)UC CUGUCUGAAU ----auGGGG G(GACCA-U) -CCUCCA--A GGCUA-AAUA 1621 ---CUCCUGA C-UGACCGAU AGUG-AA--- -CCAGUACC( -GUGA-)GGG ---AAA-GG- 1681 CG-------- ---------- ---------- ---------- ---------- ---------- 1741 AAAAGAACCC C(GGCGA--) GGGG------ ---------- ------AGUG AA--AAAGA- 1801 ACCUG-AAAC CGUG-UAC-G U-<------- ---------- ---------- ---------- 1861 ----->ACAA GCAGUGGGAG CACGC---<- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------> (-----uuag 2041 --)---GCGU GUGACUGC-G UACCUU(UU- GUAUA)AUGG |GUC-AGCGA CU-----UA- 2101 UAUUCUGUAG CAA--gguua a-cc---(-- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ------gaau a)-----ggg --gagc-cGA 2521 AGG-(-GAAA )--CCG<--- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ----->AGUC U-(UAACU-) -G-GGCG--- -----UUAAG UUGCA-GGGU 2701 AUA-GACCCG AA-ACCCG-G UG-AUCUAGC CAU-GGG-CA GGUUGAA--- G-GU--UG-G 2761 G(-------- ---------- ---------- ---------- -----uaac) ACUAACUGGA 2821 GGACCGAA-C CGAC-UAAU( GUUGAAA-A) AUUA-GCGGA --UGACUUG- UGGCUGG-GG 2881 GU(G-AAAG) GCC-AAUC-A A-ACCGGGAG AUAGCU-GGU UCUCC--CCG AA-AGC-UAU 2941 (-UUAG)GUA GC-GC-CUCG UGAA<----- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ------->UU CAU|-CUCCG 3061 G|GGGUAG|A GCACUGU-UU CG-gca--ag gggguc--(a uccc----)< ---------- 3121 ---------- ---------- ---------- ---------- ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---->--gac uua-cc-aac 3301 cCG--AU-GC AAACUGCG-- AAUA|-CCGG -A-G--AAUG ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- -UUA--UC-A -CGGG-AGAC ACACG--GC- GG-GU(-GCU 3481 AAC)GUCCGU CG-UG----A AGAGGG(AAA -CAA)CCC-A GACCG-C-CA -GC-UAA--- 3541 --GGU-CCCA -AAGUCA-U- GGUUAAGUG- ---------- GGAAACGAU- GUGGGAAGGC 3601 C-C------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- AGACA-GCCA G<-------- ---------- ---------- 3721 ---------- ---------- ---------- ---------- -->GAUGU-U GGC(UUAGAA 3781 GC-A)-GCCA -UCAU|U(U- AA)A|GAAAG C(--GUAAUA )GC|-UCAC- UGGUCG<--- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ->AGU-CG-G -CC-UGC|-G CGGAAGAU-- ---------- ---------- ----GUAACG 3961 GGGCU----- ---------- ---------- ---------- ---------- ---------- 4021 ---------- ----AAACCA UGC------- ---------- ---------- ---------- 4081 -------|AC CGAA--GCU| G--C-GG|CA Gcgacgc--- ---------- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- ---------- ---------- ---------- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- --------(u 4441 uau---)--- -gcguug-UU -G-----GGU AGGGG-AG|- CG-UUCUGUA A---GCCUGC 4501 G--------A AGGUG-UGCU (GUGA---)< ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ------->GG CAU--GCU-G G|AGGU---| AUCAGAAGUG CGAAUGC-UG 4681 AC|AUAAGUA -ACGA-UAA- AGC-GG-GU- (gaaaa---- ---------- ---------- 4741 ---------- -----)-G-C CCGCU-|CGC C-GGAA-GAC CAA--GGGUU -|----CCUG 4801 UCCAA---CG ---------- ----(--UUA AU)C-G|-GG GCAGGG---- ---------- 4861 ---UGAGU-- -CGACCCCUA A-G-G-C--- GAGGCC-(-G AAA------- ------)<-- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 >--GGC---G UA---G-UCG AU-GGGAAA- CAGG(----- ---------- ---------- 5041 ---------- --uuaauauu ----)CCUGU |---AC|UUG G--UGUUACU |GC<------ 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ---------- ---------- 5221 ---------- ---------- ---------- ---------- ---------- ---------- 5281 ---------- ---------- ---------- ---------- ---------- ---------- 5341 ---------- ---------- ---------- ---------- ---------- ---------- 5401 ---------- ---------- ------->-G AAGGGGG-GA CGGAGAAGGC UAUGUUG--G 5461 CCGGG(CGAC GGUUGU)CCC GGU|UUAAGC GUGUAGGC|U GGUUUUCCAG G(CAAAU)CC 5521 |GGAAAAUCA AGGCUGAGGC GUGAUGACGA GGCAC(UACG )GUGCUGAAG CAACAAAUGC 5581 CC<------- ---------- ---------- ---------- ---------- ---------- 5641 ---------- ---------- ------->UG CUUCCAGGAA ----AA-GCC UCU<------ 5701 ---------- ---------- ---------- ---------- ---------- ---------- 5761 ---------- ---------- ---------- ---------- ---------- ---------- 5821 ---------- ---------- ---------- ---------- ---------- ---------- 5881 ---------- ---------- ---------- ---------- ---------- ---------- 5941 ---------- ---------- ---------- ---------- ---------- ---------- 6001 ---------- ---------- ---------- ---------- ---------- ---------- 6061 ---------- ---------- ---------- ---------- ---------- ---------- 6121 ---------- ---------- ---------- ---------- ---------- ---------- 6181 ---------- ---------- ---------- ---------- ---------- ---------- 6241 ---------- ---------- ---------- ---------- ---------- ---------- 6301 ---------- ---------- ---------- ---------- ---------- ---------- 6361 ---------- ---------- ---------- ---------- ---------- ---------- 6421 ---------- ---------- ------>AAG CAUCAGGUAA CAUCAA---- -AUCGUA|CC 6481 C--CAAACC- -(GACACA)G G|UGGUC-AG GUA-(GAG-A A-----)-UA CCAAGGCGC| 6541 |--UUGAG-A G--AACUCGG -GUGA-AGGA ACUAGGCAAA AUGGUG-CCG UAAC(UUCG- 6601 )GGAGAA-GG CAC|GCUGAU AUGUAGGUGA GGUCC(--CU CGC)<----- ---------- 6661 ---------- ---------- ---------- ---------- ---------- ---------- 6721 ---------- ---------- ---------- ---------- --->GGAUGG AGCUGAAAUC 6781 -AGU|C(GAA )G--AUACCA GCUGGCUG|C AA---CUG-U UU(AUUAA)A AA-CACA-GC 6841 ACUGUG|CA- -AACAC---- ---------- (--GAAA--- ------)--- ---------- 6901 GUGGACGUA- UAC-GGUGUG ACGCCU<--- ---------- ---------- ---------- 6961 ---------- ---------- -------->G CC-CG-GU|G CCGGAA-GGU UAAUUG-AU- 7021 --GGGGUUAG C-(------- ---------- ---------- ---------- ---------- 7081 ---------- ---------- ---------G CAA)GCGAAG CUCU--UGAU C-GAAGCC-| 7141 CC-GGUA-AA C-|GG-C|-G -GCCGU-(AA CUAUA)ACGG UC|C(UAA)- GG-UAGCGAA 7201 AUU-CC-U-U |GUCGGG(-U AAGU-)UCCG AC|CU-GCAC GAAUGGCGUA A-UGAUGGCC 7261 AG-------- ---------- -------GCU GUCUCCACCC GAGA-CU-CA ----GUGAAA 7321 UU|G|AACUC GC-UG(U-GA AGAUG)CAGU GUA----CCC GCGGCAAGAC GGAAAG-ACC 7381 CCGUGA-|-A CCUUU--ACU AU|--A-GCU UGA--CACU| <--------- ---------- 7441 ---------- ---------- --->GAACA- UU-----GAG -CCUUGAUG- UGU---AGGA 7501 UAGGUGGGA- -GGCUUU-GA A-GUGUGGAC --<------- ---------- ---------- 7561 ---------- ---------- ---------- ---------- ---------- ---------- 7621 ---------- ---------- ---------> --(----GCC A)-GUCUG-C AUG--GAGCC 7681 GACCUUGAAA UACCACC|c- ----uUUAA- U-G-U-UUGA UGUU-CUAA- -CGUUGA--- 7741 CCCG-(---U AAUC)-CGGG ---------- ---------- ---------- ---UUGCG<- 7801 ---------- ---------- ---------- ---------- ---------- ---------- 7861 ---------- ---------- ---------- ---------- ---------- ---------- 7921 ---------- ---------- ---------- ---------- ---------- ---------- 7981 ---------- ---------- ---------- ---------- ---------- ---------- 8041 ---------- ---------- ---------- ---------- ---------- ---------- 8101 ---------- ---------- ----->-GAC AGUGU-C-UG -GUG-GG-UA GUUUGACUG( 8161 GGG)CG-GU- C|UCCUCC(- --------UA AAGAGUAAC- )GGAG-GA|G |C|ACGA-|< 8221 ---------- ---------- ---------- ---------- ---------- ---------- 8281 ---------- ---------- ---------- ---------- ---------- ---------- 8341 ---------- ---------- ---------- ---------- ---------- ->A-GG-UUG 8401 -GC|--UAA- UCCUGG<--- ---------- ---------- ---------- ---------- 8461 ---------- ---------- ---------- ---------- ---------- ---------- 8521 ---------- ---------- ---------- ---------- ---------- ---------- 8581 ---------- ---------- ---------- ---------- ---------- ---------- 8641 ---------- ---------> (ucggaca-- )----UCAGG AG-------- ---------- 8701 ---------- ---------- ---------- ---GUUA|GU (G|CAAUG)G CAU-AAG-CC 8761 A-GC-UUGAC UGCGA-GCG( -ugacgg--- )CGCGA-GCA G--------- ---------- 8821 ---------- --------GU GC-------- ---(GAAA-- -)-------- ----GCA-GG 8881 U|---CAUAG UGAUC-CGGU GG-U------ ---------- UCU(------ ---------- 8941 ---------- ---------- ---------- ---------- ----GAAUGG AA)GG|GCCA 9001 UCGCUCAAC- |GGAUAAAAG GUACUC|CGG G|GAUAACAG |G-CUG-A-U ACCGCCCAAG 9061 AG(U--UCAU )AUCGACGGC --GGUGUUUG GC-ACCUCGA UGUC|GG--C U|C|AUCAC| 9121 AU-CC-UGGG GC-UG(--AA -GU)AGGUCC CAAG-GGU|A UGGC(UGUUC )GCCAU-UUA 9181 A--AGUGGU- --ACGCGAGC UGGGUUUAGA AC|GU-C(GU GA)GACAGUU CGGUCCCUAU 9241 CU|GCCGU-G GG|C|<---- ---------- ---------- ---------- ---------- 9301 >GCUGG-AGA AC-UGA-GGG GGG-CUG-CU CC--(UAGU- AC(-GAGA)G GACC-)GGAG 9361 U--GG-<--- ---------- ---------- -------->A CGCAUCA-CU GGUGUUCGGG 9421 U|-UGU-CAU (GCCA-)<-- ---------- ---------- ---------- ---------- 9481 ---------- ---------- ---------- ---------- ---------- ---------> 9541 AUG-GCACUG CCCG--GUAG CUAA-AUGCG GAA------- ---------- -------GAG 9601 ---------- -AUAAGUGCU (GAAAGC--A U-CUA)A-GC -AC-GAAACU UG-CCCCGAG 9661 AUGAG--U-- -UCUCC-<-- ---------- ---------- ---------- ---------- 9721 ---------- ---------- ---------- ---------- ---------- ---------- 9781 ---------- ---------- ---------- ---------- ---------- ---------- 9841 ---------- ---------- ---------- ---------- ---------- ---------- 9901 ---------- ---------- ------>CU| GACCCU(UUA )AGGGUC-cu gaaggAA|CG 9961 UUG(AAGACG A--)CGACGU U--------- ---------- ---------- ------GAUA 10021 G|GCCGGGUG ---------- ---------- ---------- ---------- ---------- 10081 ---------- ---UGUAAGC GCA------- ---------- --------(- ---------- 10141 ---------- -------GCG A)UGCGU--- ---------- ---------- ---------- 10201 ----UGAGCU A|A|CCGGUA CUAAU-g--- ---------- ---------- -----aaccg 10261 u--------- ---------- ---------- ---------- ---GAG---- ---GCUUAAC 10321 Cuu-----|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ||||| // LOCUS (1)-EUKARY 10775 bp RNA RNA 27-JAN-1998 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 10775) Corresponding GenBank entry: DIVIDER BASE COUNT 0 a 0 c 0 g 0 t 10775 others ORIGIN 1 |......... .......... .......... .......... .......... .......... 61 .......... .......... .......... .......... .......... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......... .......... .......... .......... 241 .......... .......... .......... .......... .......... .......... 301 .......... .......... .......... .......... .......... .......... 361 .......... .......... .......... .......... .......... .......... 421 .......... .......... .......... .......... .......... .......... 481 .......... .......... .......... .......... .......... .......... 541 .......... .......... .......... .......... .......... .......... 601 .......... .......... .......... .......... .......... .......... 661 .......... .......... .......... .......... .......... .......... 721 .......... .......... .......... .......... .......... .......... 781 .......... .......... .......... .......... .......... .......... 841 .......... .......... .......... .......... .......... .......... 901 .......-.. .......-.. .......... .......... .......... .......... 961 .......... .......... .......... .......... .......... .......... 1021 .......... .......... .......... .......... .......... .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .......... .......... .......... .......... .......... 1201 .......... .......... .......... .......... .......... .......... 1261 .......... .......... .......... ......-... .......... ..-....... 1321 .......... .......... .......... .......... .......... .......... 1381 .......... .......... .......... .......... .......... .......... 1441 .......... .......... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... .......... .......... .......... .......... .......... 1621 .......... .-........ .......... .......... .......... .......... 1681 .......... .......... .......... .......... .......... .......... 1741 .......... .......--. .......... .......... .......... .......... 1801 .......... .......... .......... .......... .......... .......... 1861 .......... .......... .....---.. .......... .......... .......... 1921 .......... .......... .......... .......... .......... .......... 1981 .......... .......... .......... .......... .......... .......... 2041 --........ .......... .......... .......... .......... .......... 2101 .......... .......... .......... .......... .......... .......... 2161 .......... .......... .......... .......... .......... .......... 2221 .......... .......... .......... .......... .......... .......... 2281 .......... .......... .......... .......... .......... .......... 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .-........ 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... .......... 2701 .......... .......... .......... .......... .......... .-........ 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... .......... 2881 .......... .......... .......... .......... .......... .......... 2941 .......... .......... .......... .......... .......... .......... 3001 .......... .......... .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .......... .......... 3181 .......... .......... .......... .......... .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .......... .......... .......... 3361 .......... .......... .......... .......... .......... .......... 3421 .......... .......... .......... .......... .......... .......... 3481 .......... .......... .......... .......... .......... .......... 3541 .......... .......... .......... .......... .......... .......... 3601 .......... .......... .......... .......... .......... .......... 3661 .......... .......... .......... .......... .......... .......... 3721 .......... .......... .......... .......... .......... .......... 3781 .....-.... .......... .......... .......... .......... .......... 3841 .......... .......... .......... .......... .......... .......... 3901 .....-.... .......... .......... .......... .......... .......... 3961 .......... .......... .......... .......... .......... .......... 4021 .......... .......... .......... .......... .......... .......... 4081 .......... .......... .......... .......... .......... .......... 4141 .......... .......... .......... .......... .......... .......... 4201 .......... .......... .......... .......... .......... .......... 4261 .......... .......... .......... .......... .......... .......... 4321 .......... .......... .......... .......... .......... .......... 4381 .......... .......... .......... .......... .......... .......... 4441 .......... .......... .......... .......... .......... .......... 4501 .......... .......... .......... .......... .......... .......... 4561 .......... .......... .......... .......... .......... .......... 4621 .......... .......... .......... .......... .......... .......... 4681 .......... .......... .......... .......... .......... .......... 4741 .......... .......... .......... .......... .......... .......... 4801 .......... .......... .....-.... ..)....... .......... .......... 4861 .......... .......... .-........ .......... ....------ ------.... 4921 .......... .......... .......... .......... .......... ........-- 4981 .-........ .......... .......... .......... .......... .......... 5041 .......... .......... .......... .......... .......... .......... 5101 .......... .......... .......... .......... .......... .......... 5161 .......... .......... .......... .......... .......... .......... 5221 .......... .......... .......... .......... .......... .......... 5281 .......... .......... .......... .......... .......... .......... 5341 .......... .......... .......... .......... .......... .......... 5401 .......... .......... .......... .......... .......... .......... 5461 .......... .......... .......... .......... .......... .......... 5521 .......... .......... .......... .......... .......... .......... 5581 .......... .......... .......... .......... .......... .......... 5641 .......... .......... .......... .......... ......-... .......... 5701 .......... .......... .......... .......... .......... .......... 5761 .......... .......... .......... .......... .......... .......... 5821 .......... .......... .......... .......... .......... .......... 5881 .......... .......... .......... .......... .......... .......... 5941 .......... .......... .......... .......... .......... .......... 6001 .......... .......... .......... .......... .......... .......... 6061 .......... .......... .......... .......... .......... .......... 6121 .......... .......... .......... .......... .......... .......... 6181 .......... .......... .......... .......... .......... .......... 6241 .......... .......... .......... .......... .......... .......... 6301 .......... .......... .......... .......... .......... .......... 6361 .......... .......... .......... .......... .......... .......... 6421 .......... .......... .......... .......... ......-... .......... 6481 .......... .......... .......... .......... .-----.... .......... 6541 .......... .......... .......... .......... .......... .......... 6601 .......... .......... .......... .......... .......... .......... 6661 .......... .......... .......... .......... .......... .......... 6721 .......... .......... .......... .......... .......... .......... 6781 .......... .......... .......... .......... .......... .......... 6841 .......... .......... .......... .-......-- ------.... .......... 6901 .......... .......... .......... .......... .......... .......... 6961 .......... .......... .......... .......... .......... .......... 7021 .......... .......... .......... .......... .......... .......... 7081 .......... .......... .......... .......... .......... .......... 7141 .......... .......... ......-... .......... .......... .......... 7201 .......... .......... .......... .......... .......... .......... 7261 .......... .......... .......... .......... .......... .......... 7321 .......... .......... .......... .......... .......... .......... 7381 .......... .......... ...-...... .......... .......... .......... 7441 .......... .......... .......... .......... .......... .......... 7501 .......... .......... .......... .......... .......... .......... 7561 .......... .......... .......... .......... .......... .......... 7621 .......... .......... .......... .......... .......... .......... 7681 .......... .......... .......... .......... .......... .......... 7741 .......... .......... .......... .......... .......... .......... 7801 .......... .......... .......... .......... .......... .......... 7861 .......... .......... .......... .......... .......... .......... 7921 .......... .......... .......... .......... .......... .......... 7981 .......... .......... .......... .......... .......... .......... 8041 .......... .......... .......... .......... .......... .......... 8101 .......... .......... .......... .......-.. -......... .......... 8161 .......... .......... .......... .......... .......... .......-.. 8221 .......... .......... .......... .......... .......... .......... 8281 .......... .......... .......... .......... .......... .......... 8341 .......... .......... .......... .......... .......... .......... 8401 .......... .......... .......... .......... .......... .......... 8461 .......... .......... .......... .......... .......... .......... 8521 .......... .......... .......... .......... .......... .......... 8581 .......... .......... .......... .......... .......... .......... 8641 .......... .......... .......... .......... .......... .......... 8701 .......... .......... .......... .......... .......... .......... 8761 .......... .......... .......... .......... .......... .......... 8821 .......... .......... ..-------- ---......- -.-------- ----...... 8881 .......... .......... .......... .......... .......... .......... 8941 .......... .......... .......... .......... .......... .......... 9001 .......... .......... .......... .......... .......... .......... 9061 .......... .......... .......... .......... .......... .......... 9121 .......... .......... .......... .......... .......... .......... 9181 .......... .......... .......... .......... .......... .......... 9241 .......... .......... .......... .......... .......... .......... 9301 .......... ..-....... ...-...... .......... ...-...... .......... 9361 .....-.... .......... .......... .......... .......... .......... 9421 .......... .......... .......... .......... .......... .......... 9481 .......... .......... .......... .......... .......... .......... 9541 .......... ....-..... .......... .......... .......... .......... 9601 .......... .......... .......... .......... .......... .......... 9661 .......... .......... .......... .......... .......... .......... 9721 .......... .......... .......... .......... .......... .......... 9781 .......... .......... .......... .......... .......... .......... 9841 .......... .......... .......... .......... .......... .......... 9901 .......... .......... .......... .......... .......... .......... 9961 .......... .......... .......... .......... .......... .......... 10021 .......... .......... .......... .......... .......... .......... 10081 .......... .......... .......... .......... .......... .......... 10141 .......... .......... .......... .......... .......... .......... 10201 .......... .|........ .......... .......... .......... .......... 10261 .......... .......... .......... .......... .......... .......... 10321 .......... .......... .......... .......... .......... .......... 10381 .......... .......... .......... .......... .......... .......... 10441 .......... .......... .......... .......... .......... .......... 10501 .......... .......... .......... .......... .......... .......... 10561 .......... .......... .......... .......... .......... .......... 10621 .......... .......... .......... .......... .......... .......... 10681 .......... .......... .......... .......... .......... .......... 10741 .......... .......... .......... ||||| // LOCUS (2)-DICTYO 10775 bp RNA RNA 09-JAN-1999 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 10775) Corresponding GenBank entry: DIVIDER BASE COUNT 0 a 0 c 0 g 0 t 10775 others ORIGIN 1 |......... .......... .......... .......... .......... .......... 61 .......... .......... .......... .......... .......... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......... .......... .......... .......... 241 .......... .......... .......... .......... .......... .......... 301 .......... .......... .......... .......... .......... .......... 361 .......... .......... .......... .......... .......... .......... 421 .......... .......... .......... .......... .......... .......... 481 .......... .......... .......... .......... .......... .......... 541 .......... .......... .......... .......... .......... .......... 601 .......... .......... .......... .......... .......... .......... 661 .......... .......... .......... .......... .......... .......... 721 .......... .......... .......... .......... .......... .......... 781 .......... .......... .......... .......... .......... .......... 841 .......... .......... .......... .......... .......... .......... 901 .......... .......... .......... .......... .......... .......... 961 .......... .......... .......... .......... .......... .......... 1021 .......... .......... .......... .......... .......... .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .......... .......... .......... .......... .......... 1201 .......... .......... .......... .......... .......... .......... 1261 .......... .......... .......... .......... .......... .......... 1321 .......... .......... .......... .......... .......... .......... 1381 .......... .......... .......... .......... .......... .......... 1441 .......... .......... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... .......... .......... .......... .......... .......... 1621 .......... .......... .......... .......... .......... .......... 1681 .......... .......... .......... .......... .......... .......... 1741 .......... .......... .......... .......... .......... .......... 1801 .......... .......... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .......... .......... 1921 .......... .......... .......... .......... .......... .......... 1981 .......... .......... .......... .......... .......... .......... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... .......... .......... .......... .......... .......... 2161 .......... .......... .......... .......... .......... .......... 2221 .......... .......... .......... .......... .......... .......... 2281 .......... .......... .......... .......... .......... .......... 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... .......... 2701 .......... .......... .......... .......... .......... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... .......... 2881 .......... .......... .......... .......... .......... .......... 2941 .......... .......... .......... .......... .......... .......... 3001 .......... .......... .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .......... .......... 3181 .......... .......... .......... .......... .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .......... .......... .......... 3361 .......... .......... .......... .......... .......... .......... 3421 .......... .......... .......... .......... .......... .......... 3481 .......... .......... .......... .......... .......... .......... 3541 .......... .......... .......... .......... .......... .......... 3601 .......... .......... .......... .......... .......... .......... 3661 .......... .......... .......... .......... .......... .......... 3721 .......... .......... .......... .......... .......... .......... 3781 .....-.... .......... .......... .......... .......... .......... 3841 .......... .......... .......... .......... .......... .......... 3901 .......... .......... .......... .......... .......... .......... 3961 .......... .......... .......... .......... .......... .......... 4021 .......... .......... .......... .......... .......... .......... 4081 .......... .......... .......... .......... .......... .......... 4141 .......... .......... .......... .......... .......... .......... 4201 .......... .......... .......... .......... .......... .......... 4261 .......... .......... .......... .......... .......... .......... 4321 .......... .......... .......... .......... .......... .......... 4381 .......... .......... .......... .......... .......... .......... 4441 .......... .......... .......... .......... .......... .......... 4501 .......... .......... .......... .......... .......... .......... 4561 .......... .......... .......... .......... .......... .......... 4621 .......... .......... .......... .......... .......... .......... 4681 .......... .......... .......... .......... .......... .......... 4741 .......... .......... .......... .......... .......... .......... 4801 .......... .......... .......... ..)....... .......... .......... 4861 .......... .......... .......... .......... .......... .......... 4921 .......... .......... .......... .......... .......... .......... 4981 .......... .......... .......... .......... .......... .......... 5041 .......... .......... .......... .......... .......... .......... 5101 .......... .......... .......... .......... .......... .......... 5161 .......... .......... .......... .......... .......... .......... 5221 .......... .......... .......... .......... .......... .......... 5281 .......... .......... .......... .......... .......... .......... 5341 .......... .......... .......... .......... .......... .......... 5401 .......... .......... .......... .......... .......... .......... 5461 .......... .......... .......... .......... .......... .......... 5521 .......... .......... .......... .......... .......... .......... 5581 .......... .......... .......... .......... .......... .......... 5641 .......... .......... .......... .......... .......... .......... 5701 .......... .......... .......... .......... .......... .......... 5761 .......... .......... .......... .......... .......... .......... 5821 .......... .......... .......... .......... .......... .......... 5881 .......... .......... .......... .......... .......... .......... 5941 .......... .......... .......... .......... .......... .......... 6001 .......... .......... .......... .......... .......... .......... 6061 .......... .......... .......... .......... .......... .......... 6121 .......... .......... .......... .......... .......... .......... 6181 .......... .......... .......... .......... .......... .......... 6241 .......... .......... .......... .......... .......... .......... 6301 .......... .......... .......... .......... .......... .......... 6361 .......... .......... .......... .......... .......... .......... 6421 .......... .......... .......... .......... .......... .......... 6481 .......... .......... .......... .......... .......... .......... 6541 .......... .......... .......... .......... .......... .......... 6601 .......... .......... .......... .......... .......... .......... 6661 .......... .......... .......... .......... .......... .......... 6721 .......... .......... .......... .......... .......... .......... 6781 .......... .......... .......... .......... .......... .......... 6841 .......... .......... .......... .......... .......... .......... 6901 .......... .......... .......... .......... .......... .......... 6961 .......... .......... .......... .......... .......... .......... 7021 .......... .......... .......... .......... .......... .......... 7081 .......... .......... .......... .......... .......... .......... 7141 .......... .......... .......... .......... .......... .......... 7201 .......... .......... .......... .......... .......... .......... 7261 .......... .......... .......... .......... .......... .......... 7321 .......... .......... .......... .......... .......... .......... 7381 .......... .......... .......... .......... .......... .......... 7441 .......... .......... .......... .......... .......... .......... 7501 .......... .......... .......... .......... .......... .......... 7561 .......... .......... .......... .......... .......... .......... 7621 .......... .......... .......... .......... .......... .......... 7681 .......... .......... .......... .......... .......... .......... 7741 .......... .......... .......... .......... .......... .......... 7801 .......... .......... .......... .......... .......... .......... 7861 .......... .......... .......... .......... .......... .......... 7921 .......... .......... .......... .......... .......... .......... 7981 .......... .......... .......... .......... .......... .......... 8041 .......... .......... .......... .......... .......... .......... 8101 .......... .......... .......... .......... .......... .......... 8161 .......... .......... .......... .......... .......... .......... 8221 .......... .......... .......... .......... .......... .......... 8281 .......... .......... .......... .......... .......... .......... 8341 .......... .......... .......... .......... .......... .......... 8401 .......... .......... .......... .......... .......... .......... 8461 .......... .......... .......... .......... .......... .......... 8521 .......... .......... .......... .......... .......... .......... 8581 .......... .......... .......... .......... .......... .......... 8641 .......... .......... .......... .......... .......... .......... 8701 .......... .......... .......... .......... .......... .......... 8761 .......... .......... .......... .......... .......... .......... 8821 .......... .......... .......... .......... .......... .......... 8881 .......... .......... .......... .......... .......... .......... 8941 .......... .......... .......... .......... .......... .......... 9001 .......... .......... .......... .......... .......... .......... 9061 .......... .......... .......... .......... .......... .......... 9121 .......... .......... .......... .......... .......... .......... 9181 .......... .......... .......... .......... .......... .......... 9241 .......... .......... .......... .......... .......... .......... 9301 .......... .......... .......... .......... .......... .......... 9361 .......... .......... .......... .......... .......... .......... 9421 .......... .......... .......... .......... .......... .......... 9481 .......... .......... .......... .......... .......... .......... 9541 .......... .......... .......... .......... .......... .......... 9601 .......... .......... .......... .......... .......... .......... 9661 .......... .......... .......... .......... .......... .......... 9721 .......... .......... .......... .......... .......... .......... 9781 .......... .......... .......... .......... .......... .......... 9841 .......... .......... .......... .......... .......... .......... 9901 .......... .......... .......... .......... .......... .......... 9961 .......... .......... .......... .......... .......... .......... 10021 .......... .......... .......... .......... .......... .......... 10081 .......... .......... .......... .......... .......... .......... 10141 .......... .......... .......... .......... .......... .......... 10201 .......... .......... .......... .......... .......... .......... 10261 .......... .......... .......... .......... .......... .......... 10321 .......... .......... .......... .......... .......... .......... 10381 .......... .......... .......... .......... .......... .......... 10441 .......... .......... .......... .......... .......... .......... 10501 .......... .......... .......... .......... .......... .......... 10561 .......... .......... .......... .......... .......... .......... 10621 .......... .......... .......... .......... .......... .......... 10681 .......... .......... .......... .......... .......... .......... 10741 .......... .......... .......... ||||| // LOCUS mt.D.dis.1 10775 bp RNA RNA 11-JAN-191 DEFINITION Mitochondria Dictyostelium discoideum. ACCESSION No information KEYWORDS No information. SOURCE Mitochondria Dictyostelium discoideum. ORGANISM Mitochondria Dictyostelium discoideum. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 10775) Corresponding GenBank entry: D16466 Dictyostelium discoideum mitochondrial LSU rRNA Yoshimasa Tanaka, University of Tsukuba, Japan Unpublished Robin, Yoshimasa Tanaka says it's O.K. to send you the Dictyostelium discoideum mitochondrial LSU rRNA sequence, so here it is. Mike This sequence has since been published. BASE COUNT 1061 a 370 c 618 g 823 t 7903 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~agu-a agag------ ---------- ---------- ---------- 241 ---------- ---------- ---------- -----aaaaA UGUUUAUAA- ----CGGAUC 301 |UCU--AUG| CAA-AUAA-g a|aaa----- ---------- -----agga| -cgua(-cga 361 aug------) a|acgaaag- guuauag|gg a-aaau-(-- ----auaaaa aagaguuagc 421 aauagca)-- auug-aagau cuauaaa-ua uccgaag-gg ---------- -----(aga- 481 )-cc|----- --(-----)- ---------- ---------- ---------- -(------)- 541 ---------- ---------- ---<-aagaa aaagaa---- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- ---------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 ---------- ---------- ---------- ---------- ---------- ---------- 781 ---------- ---------- ---------- -------->- -----gAAAC |GCAGUGAAG 841 UGA(AACA)U CUUAGUA--- -ACUGU---- ---------- ---------- ---AGGAAAA 901 AAAAUC(-AA AA)GA-G-AU |GCG-GUAA- -GUAG-U(-G GUGA)GCGAA -AGCCGAgg- 961 -agagua<-- ---------- ---------- ---------- ---------- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- --->------ 1201 --aaaguaga ccauuagaag aaaacugaag aaacuaggu< ---------- ---------- 1261 ---------- ---------- ---------> (ggaaa-)uc caag------ GC-|A(GAA) 1321 U--AAGG(UG AAAGU)CCAg ua--agguaa gggacuaaug guaa------ ---------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- >agAAGUAAA ACGAAG(--- --------aa 1561 aggagga)AU UUGUUUGAAA ----AAUGGG G(GCCCA-C) -CCCCAA--A CUCAA-UAUA 1621 ---UGCUUAU U-UGACUGAU AGUG-AA--- -CAAGUACU( -GUGA-)AGG ---AAA-GA- 1681 UG-------- ---------- ---------- ---------- ---------- -------aaa 1741 aggaauauag a(aguua--) ucua------ ---------- ---uucAGUG AA--A-AGA- 1801 CCGUG-AAAU UGUA-AAC-A U-<------- ---------- ---------- ---------- 1861 ----g>auga gCAguuggag u-------<- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------> (------uaa 2041 --)------- gugacaac-G UACCUU(UU- GUAUA)AUGG |GUC-AGCGA GU-----UA- 2101 AUAAAUcgua gca-agcuua a-ggu--(-- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- -------agu a)----acua --uagg-cGC 2521 AGC-(-GAAA )--GCG<--- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ----->uauc u-(uaaua-) -g-ggug--- uuucaagagu uac-A-UUUA 2701 UUA-GACCCG AA-ACCAA-G CG-AUCUAAU UAU-GAA-CA CGC-auu--- u-ua--uu-a 2761 u(-------- ---------- ---------- ---------- -----uuuu) auuuuaauuu 2821 G-GCGGAA-C CC-GUAACU( GUUGCAA-A) AGUU-UGGGA --UGAUUUG- UGAUUAG-GG 2881 GU(G-AAAG) GCU-AAUC-A A-GCUUGGUG AUAGCU-G-U UUUUU--ACG AA-AUC-UAU 2941 (-CUAG)GUA GA-AC-GGUG GUauaa AAU|-UUAUA 3061 G|AGGUAG|A GCACUGA-AU GG-uuc--aa c-------(c uaag----)< ---------- 3121 ---------- ---------- ---------- ---------- ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---->----- ----gu---u 3301 AUU--AU-UU AAACUUCG-- AAUA|-CUAU -A-A---aua ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- -aauu-gA-C -CACU-AGGC AGACU--AU- GA-GC(-GCU 3481 AAG)GUCCAU AGgUC----U AAAGGG(AAA -CAG)CCC-A GAUUG-U-AA -GU-UAA--- 3541 --UGU-UCuu aaaUAAU-A- GUGU-AGUG- ---------- ucaaaggca- uggagaaagu 3601 g-a------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- uguua-AUUG G<-------- ---------- ---------- 3721 ---------- ---------- ---------- ---------- -->AAAGU-A GGA(UUGGAA 3781 GC-G)-ACCA -UCUU|U(U- AA)A|GAAAG C(--GUAAAA )GC|-UCAC- CAAUUUGGC-GU-U -CU-CUA|-G CCAACAAU-- ---------- ---------- ----GUACAG 3961 GAACU----- ---------- ---------- ---------- ---------- ---------- 4021 ---------- ---caACAUU AU-------- ---------- ---------- ---------- 4081 -------|AC AGAA--ACU| A--C-AA|aa u--------- ---------- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- ---------- ---------- ---------- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- --------(u 4441 auaac-)--- --------au -u-----GGU AGUAA-AA|- UG-UUCCGUA U---AAUUGU 4501 G--------A AGUUA-ACUC (aagaa--)< ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ------->GA GAU--AAU-G G|AGUU---| AUCGGAAUUA AGAAUGC-UG 4681 AU|AUGAGUA -AUG--uua- AUA-AG-GU- (uaag----- ---------- ---------- 4741 ---------- -----)-A-C CUUAU-|CAC U-GAAA-AUU AGA--AG-UU -|----uccu 4801 aauaaa-aag ---------- ----(--gua ag)c-u|gau uaggg----- ---------- 4861 ---uuacg-- -CGAUCGCUA A-G-A-U--- uaauau-(-g aca------- ------)<-- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 >--aua--aa cu---A-UCG AU-GCGCAua uaga(----- ---------- ---------- 5041 ---------- --uuaauaau ----)ucuaa |---cg|uuu u--uauugua |gu<------ 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ---------- ---------- 5221 ---------- ---------- ---------- ---------- ---------- ---------- 5281 ---------- ---------- ---------- ---------- ---------- ---------- 5341 ---------- ---------- ---------- ---------- ---------- ---------- 5401 ---------- ---------- ------->-- uuuaauu-GA Cauguguauu u--------- 5461 ---------- ---------- ---------- ---------- ---------- ---------- 5521 ---------- ---------- ---------- ---------- ---------- ---------- 5581 --<------- ---------- uaaauaauua uauuauacuu acauuauaga uuauuugaaa 5641 uauaaguuuu aaaaauagau uaaaaca>aa auauCUGUAA ---AAA-gau a--<------ 5701 ---------- ---------- ---------- ---------- ---------- ---------- 5761 ---------- ---------- ---------- ---------- ---------- ---------- 5821 ---------- ---------- ---------- ---------- ---------- ---------- 5881 ---------- ---------- ---------- ---------- ---------- ---------- 5941 ---------- ---------- ---------- ---------- ---------- ---------- 6001 ---------- ---------- ---------- ---------- ---------- ---------- 6061 ---------- ---------- ---------- ---------- ---------- ---------- 6121 ---------- ---------- ---------- ---------- ---------- ---------- 6181 ---------- ---------- ---------- ---------- ---------- ---------- 6241 ---------- ---------- ---------- ---------- ---------- ---------- 6301 ---------- ---------- ---------- ---------- ---------- ---------- 6361 ---------- ---------- ---------- ---------- ---------- ---------- 6421 ---------- ---------- ------>--- ---uuuuaaa uaaaaa---- -AUCGUA|CU 6481 ---UAAACC- -(GACACU)G G|UUAAU-UG AUA-(GAA-U A-----)-UA UUAAAGUG-| 6541 |--UAGAA-U G--AAUGAUU -CUGA-AGGA ACUCGGCAAA AUAACU-CCG UAAC(UGCG- 6601 )GGAGAA-GG AGA|GCCuuu ---guu---- -----(guaa aa-)<----- ---------- 6661 ---------- ---------- ---------- ---------- ---------- ---------- 6721 ---------- ---------- ---------- ---------- --->------ --aau--gaa 6781 -GGU|C(ACA )G--UAAAGA AGGGGUGG|C GA---CUG-U UU(AAUAA)A AA-CACA-GG 6841 AUUCUG|CA- -AAAUG---- ---------- (--GCAA--- ------)--- ---------- 6901 CAUGAUGUA- UAG-GGUCUG CGACCU<--- ---------- ---------- ---------- 6961 ---------- ---------- -------->G CC-CG-GU|G CUCCAA-GAG GAAGAG-GA- 7021 --GAACU--- --(------- ---------- ---------- ---------- ---------- 7081 ---------- ---------- ---------g caa)-----G GUUU--GAAU U-GAAGUC-| 7141 UG-AGUA-AA C-|GG-C|-G -GCUGU-(AA CUAUG)ACGG UC|C(UAA)- GG-UAGCGAA 7201 AUU-CC-U-U |GUCGAG(-U AAUU-)UUCG AC|GC-GCAU GAAUGGUGUA A-CGACCUCC 7261 CC-------- ---------- -------ACU GUCUCCAGAA UCAC-UU-CG ----AUGAAA 7321 UU|G|AACUU UC-CG(U-GA AGAUG)CGGA AUA----UUA GCAGCUAGAC GGAAAG-ACC 7381 CUAUGC-|-A CCUUA--ACU UC|--A-CGC AUA--UAUU| <--------- ---------- 7441 ---------- ---------- --->GUGCA- AC-----AUU -UUUAAUUA- CGU---AGGA 7501 UACUUAUGa- -ugcuua-ug a-ucuuuugg --<------- ---------- ---------- 7561 ---------- ---------- ---------- ---------- ---------- ---------- 7621 ---------- ---------- ---------> uuuuggccaa u)-uuaaa-g ga----ggcg 7681 -cuggUGAAA UAGUAAG|u- ---auAUUA- G-A-A-AAAU AGUA-Cuca- -a-------- 7741 -----(---- -aca)----- ---------- ---------- ---------- -------u<- 7801 ---------- ---------- ---------- ---------- ---------- ---------- 7861 ---------- ---------- ---------- ---------- ---------- ---------- 7921 ---------- ---------- ---------- ---------- ---------- ---------- 7981 ---------- ---------- ---------- ---------- ---------- ---------- 8041 ---------- ---------- ---------- ---------- ---------- ---------- 8101 ---------- ---------- ----->-GAU AAUGU-A-UG -CCG-GG-UA GUUUGACUG( 8161 GGG)CG-GU- A|ACCUUC(- --------UA AAGAGUAAC- )GAAG-GU|G |U|AUAA-|< 8221 ---------- ---------- ---------- ---------- ---------- ---------- 8281 ---------- ---------- ---------- ---------- ---------- ---------- 8341 ---------- ---------- ---------- ---------- ---------- ->A-GG-UAA 8401 -AC|--UCA- AAAUAA<--- ---------- ---------- ---------- ---------- 8461 ---------- ---------- ---------- ---------- ---------- ---------- 8521 ---------- ---------- ---------- ---------- ---------- ---------- 8581 ---------- ---------- ---------- ---------- ---------- ---------- 8641 ---------- ---------> (acugguuag )----UUAUU UG-------- ---------- 8701 ---------- ---------- ---------- ---GUGA|GU (G|UAAUG)G CAU-AAG-UU 8761 U-GC-UUGAC UGAAA-GAC( -cuacaa--- )GUCGA-UCA G--------- ---------- 8821 ---------- --------AG AC-------- ---(GCAA-- -)-------- ----GUC-GA 8881 U|---CAUAG UGAUC-CAAU AG-U------ ---------- UCU(------ ---------- 8941 ---------- ---------- ---------- ---------- ----GUGUGG AA)AG|GCUA 9001 UUGCU-AAC- |GGAUAAAAG GUACGC|UAG G|GAUAACAG |G-CUA-G-U CACAUAUUAG 9061 AG(U--UCAU )AUCUGUUAU --GUGGUUCG GC-ACCUCGA UGUC|GG--C U|U|AACAC| 9121 AU-CC-cGGA Gu-UG(--AA -AA)AGuUUC CaAG-GGU|U GGGG(UGUUC )ACCCA-UUA 9181 A--AGUGUU- --ACAUGAGC UGGGUUUAAA AC|GU-C(GU GA)GACAGUU UGGUCCCUAU 9241 CU|ACUGU-U AA|A|<---- ---------- ---------- ---------- ---------- 9301 >aacga-aaa aa-u-u-AAA AUC-CUU-CC UU--(UAGU- AC(-GAGA)G GACU-)GAGG 9361 U--GG-<--- ---------- ---------- -------->G UCGAUCA-CU GGUGUAUUAA 9421 U|-UAU-UAU (aaca-)<-- ---------- ---------- ---------- ---------- 9481 ---------- ---------- ---------- ---------- ---------- ---------> 9541 AUA-GUACCG UUAA--GUAG CUAC-AUCGA Aauauuaaua auauauagua uuauuaaGAG 9601 ---------- -AGAACUGCU (GAAAAA--A UAUUA)A-GU -AG-GAAACU UA-UUUU--- 9661 -agau--u-- -uuuuu-<-- ---------- ---------- ---------- ---------- 9721 ---------- ---------- ---------- ---------- ---------- ---------- 9781 ---------- ---------- ---------- ---------- ---------- ---------- 9841 ---------- ---------- ---------- ---------- ---------- ---------- 9901 ---------- ---------- ------>--| ------(--- )--------- auaguca|GG 9961 UAA(AAGAUU A--)UUACUU U--------- ---------- ---------- ------GAUA 10021 G|GCUACAUA uagaaaugaa uaguaauaua auauaaaaau uugaaaaaau uuuuccauua 10081 auucuauaau uaaUGUGAUC UUA------- ---------- --------(- ---------- 10141 ---------- ------uuua u)UAAGA--- ---------- ---------- ---------- 10201 ----UUaGUA A|A|GUAGUA CUAAA-u--- ---------- ---------- ----auggau 10261 ---------- ---------- ---------- ---------- -----gacgu auuuuauuac 10321 u-------|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ||||| // LOCUS mt.D.dis.2 10775 bp RNA RNA 11-JAN-191 DEFINITION Mitochondria Dictyostelium discoideum. ACCESSION No information KEYWORDS No information. SOURCE Mitochondria Dictyostelium discoideum. ORGANISM Mitochondria Dictyostelium discoideum. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 10775) Corresponding GenBank entry: U21880 LOCUS DDU21880 1620 bp DNA INV 19-MAR-1995 DEFINITION Dictyostelium discoideum mitochondrion large subunit rRNA (rrn) gene, mitochondrial gene encoding mitochondrial rRNA, partial sequence. ACCESSION U21880 KEYWORDS . SOURCE slime mold. ORGANISM Mitochondrion Dictyostelium discoideum Eukaryotae; mitochondrial eukaryotes; Dictyosteliida; Dictyostelium. REFERENCE 1 (bases 1 to 1620) AUTHORS Wilczynska,Z., Barth,C. and Fisher,P.R. TITLE Partial genomic clone of Dictyostelium discoideum mitochondrial large subunit rRNA JOURNAL Unpublished REFERENCE 2 (bases 1 to 1620) AUTHORS Fisher,P.R. TITLE Direct Submission JOURNAL Submitted (28-FEB-1995) Paul R. Fisher, School of Microbiology, La Trobe University, Bundoora, Melbourne, Victoria 3083, Australia COMMENT NCBI gi: 717117 FEATURES Location/Qualifiers source 1..1620 /mitochondrion /strain="AX2" /organism="Dictyostelium discoideum" rRNA <1..>1620 /gene="rrn" /evidence=experimental /product="mitochondrial large subunit rRNA" BASE COUNT 580 a 225 c 342 g 473 t ORIGIN BASE COUNT 580 a 225 c 342 g 473 t 9155 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 |~~~~~~~~| ~~~~~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~~(~~~~ 361 ~~~~~~~~~) ~|~~~~~~~~ ~~~~~~~|~~ ~~~~~~~(~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~)~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~(~~~~ 481 )~~~|~~~~~ ~~(~~~~~)~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~~~)~ 541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~<~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~>~ ~~~~~~~~~~ |~~~~~~~~~ 841 ~~~(~~~~)~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~(-~~ ~~)~~~~-~~ |~~~~~~~~~ ~~~~~~~(~~ ~~~~)~~~~~ ~~~~~~~~~~ 961 ~~~~~~~<~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~>~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~< ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~> (~~~~~~)~~ ~~~~~~~~~~ ~~-|~(~~~) 1321 ~~~~~~~(~~ ~~~~~)~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~<~~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ >~~~~~~~~~ ~~~~~~(~~~ ~~~~~~~~~~ 1561 ~~~~~~~)~~ ~~~~~~~~~~ ~~~~~~~~~G G(GCCCA-C) -CCCCAA--A CUCAA-UAUA 1621 ---UGCUUAU U-UGACUGAU AGUG-AA--- -CAAGUACU( -GUGA-)AGG ---AAA-GA- 1681 UG-------- ---------- ---------- ---------- ---------- -------aaa 1741 aggaauauag a(aguua--) ucua------ ---------- ---uucAGUG AA--A-AGA- 1801 CCGUG-AAAU UGUA-AAC-A U-<------- ---------- ---------- ---------- 1861 ---ga>uaga gCAguuggag u-------<- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------> (------uaa 2041 --)------- gugacaac-G UACCUU(UU- GUAUA)AUGG |GUC-AGCGA GU-----UA- 2101 AUAAAUcgua gca-agcuua a-ggu--(-- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- -------agu a)----acua --uagg-cgc 2521 ag--(-GAAA )---cg<--- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ----->guau cu(uaaua-) -g-gugu--- --uca-gag- uac-A--UUA 2701 UUA-GA-CCG AA-AC-AA-G CG-AUCUAAU UAU-GAA-CA CGC-auu--- u-ua--uu-a 2761 u(-------- ---------- ---------- ---------- -----uuuu) auuuuaauuu 2821 G-GCGGAA-C CC-GUAACU( GUUGCAA-A) AGUU-UGGGA --UGAUUUG- UGAUUAG-GG 2881 GU(G-AAAG) GCU-AAUC-A A-GCUUGGUG AUAGCU-G-U UUUUU--ACG AA-AUC-UAU 2941 (-CUAG)GUA GA-AC-GGUG GUauaa AAU|-UUAUA 3061 G|AGGUAG|A GCACUGA-AU GG-Uuc--aa c-------(c uaag----)< ---------- 3121 ---------- ---------- ---------- ---------- ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---->----- ----gu---u 3301 AUU--AU-UU AAACUUCG-- AAUA|-cuau -a-a---aua ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- -aauu-gA-C -CACU-AGGC AGACU--AU- GA-GC(-GCU 3481 AAG)GUCCAU AGgUC----U AAAGGG(AAA -CAG)CCC-A GAUUG-U-AA -GU-UAA--- 3541 --UGU-UCuu aaaUAAU-A- GUGU-AGUG- ---------- ucaaaggca- uggagaaagu 3601 g-a------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- uguua-AUUG G<-------- ---------- ---------- 3721 ---------- ---------- ---------- ---------- -->AAAGU-A GGA(UUGGAA 3781 GC-G)-ACCA -UCUU|U(U- AA)A|GAAAG C(--GUAAAA )GC|-UCAC- CAAUUUGGC-GU-U -CU-CUA|-G CCAACAAU-- ---------- ---------- ----GUACAG 3961 GAACU----- ---------- ---------- ---------- ---------- ---------- 4021 ---------- ---caACAUU AU-------- ---------- ---------- ---------- 4081 -------|AC AGAA--ACU| A--C-AA|aa u--------- ---------- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- ---------- ---------- ---------- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- --------(u 4441 auaac-)--- --------au -u-----GGU AGUAA-AA|- UG-UUCCGUA U---AAUUGU 4501 G--------A AGUUA-ACUC (-aga---)< ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ------->GA GAU---AU-G G|AGUU---| AUCGGAAUUA AGAAUGC-UG 4681 AU|AUGAGUA -AUG--uua- AUA-AG-GU- (uaag----- ---------- ---------- 4741 ---------- -----)-A-C CUUAU-|CAC U-GAAA-AUU AGG--AGGUU -|----uccu 4801 uauuaaaaag ---------- ----(--gua ag)c-u|gau uaggg----- ---------- 4861 ---uuacg-- -CGAUCGCUA A-G-A-U--- uaauau-(-g aca------- ------)<-- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 >--aua--aa cu---A-UCG AU-GCGCAua uaga(----- ---------- ---------- 5041 ---------- --uuaauaau ----)ucuaa |---cg|uuu u-uuauugua |gu<------ 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ---------- ---------- 5221 ---------- ---------- ---------- ---------- ---------- ---------- 5281 ---------- ---------- ---------- ---------- ---------- ---------- 5341 ---------- ---------- ---------- ---------- ---------- ---------- 5401 ---------- ---------- ------->-- uuuaauu-GA Cauguguauu u--------- 5461 ---------- ---------- ---------- ---------- ---------- ---------- 5521 ---------- ---------- ---------- ---------- ---------- ---------- 5581 --<------- ---------- uaaauaauua uauuauacuu acauuauaga uuauuugaaa 5641 uauaaguuuu aaaaauagau uaaaaca>aa auauCUGUAA ---AAA-gau a--<------ 5701 ---------- ---------- ---------- ---------- ---------- ---------- 5761 ---------- ---------- ---------- ---------- ---------- ---------- 5821 ---------- ---------- ---------- ---------- ---------- ---------- 5881 ---------- ---------- ---------- ---------- ---------- ---------- 5941 ---------- ---------- ---------- ---------- ---------- ---------- 6001 ---------- ---------- ---------- ---------- ---------- ---------- 6061 ---------- ---------- ---------- ---------- ---------- ---------- 6121 ---------- ---------- ---------- ---------- ---------- ---------- 6181 ---------- ---------- ---------- ---------- ---------- ---------- 6241 ---------- ---------- ---------- ---------- ---------- ---------- 6301 ---------- ---------- ---------- ---------- ---------- ---------- 6361 ---------- ---------- ---------- ---------- ---------- ---------- 6421 ---------- ---------- ------>--- ---uuuuaaa uaaaaa---- -AUCGUA|CU 6481 ---UAAACC- -(GACACU)G G|UUAAU-UG AUA-(GAA-U A-----)-UA UUAAGGUG-| 6541 |--UAGAA-U G--AAUGAUU -CUGA-AGGA ACUCGGCAAA AUAACU-CCG UAAC(UGCG- 6601 )GGAGAA-GG AGA|GCCuuu ---guu---- -----(guaa aa-)<----- ---------- 6661 ---------- ---------- ---------- ---------- ---------- ---------- 6721 ---------- ---------- ---------- ---------- --->------ --aau--gaa 6781 -GGU|C(ACA )G--UAAAGA AGGGGUGG|C GA---CUG-U UU(AAUAA)A AA-CACA-GG 6841 AUUCUG|CA- -AAAUG---- ---------- (--GCAA--- ------)--- ---------- 6901 CAUGAUGUA- UAG-GGUCUG CGACCU<--- ---------- ---------- ---------- 6961 ---------- ---------- -------->G CC-CG-GU|G CUCCAA-GAG GAAGAG-GA- 7021 --GAACU--- --(------- ---------- ---------- ---------- ---------- 7081 ---------- ---------- ---------g caa)-----G GUUU--GAAU U-GAAGUC-| 7141 UG-AGUA-AA C-|GG-C|-- -GCUGU-(AA CUAUG)ACGG UC|C(UAA)- GG-UAGCGAA 7201 AUU-CC-U-U |GUCGAG(-U AAUU-)UUCG AC|GC-GCAU GAAUGGUGUG AACGACCUCC 7261 CC-------- ---------- -------ACU GUCUCCAGAA UCAC-UU-CG ----AUGAAA 7321 UU|G|AAC-U UC-CG(U-GA AGAUG)CGGA AUAuuucaUA GCAGCCUGAC GGA-AG-A-C 7381 CUAUGC-|-A CCUUA--ACU UC|--A-CGC A~~~~~~~~| <~~~~~~~~~ ~~~~~~~~~~ 7441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~>~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~<~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~> ~~(~~~~~~~ ~)~~~~~~~~ ~~~~~~~~~~ 7681 ~~~~~~~~~~ ~~~~~~~|~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7741 ~~~~~(~~~~ ~~~~)~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~<~ 7801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~>~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~( 8161 ~~~)~~~~~~ ~|~~~~~~(~ ~~~~~~~~~~ ~~~~~~~~~~ )~~~~~~~|~ |~|~~~~-|< 8221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~>~~~~~~~~ 8401 ~~~|~~~~~~ ~~~~~~<~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8641 ~~~~~~~~~~ ~~~~~~~~~> (~~~~~~~~~ )~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~|~~ (~|~~~~~)~ ~~~~~~~~~~ 8761 ~~~~~~~~~~ ~~~~~~~~~( ~~~~~~~~~~ )~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~(~~~~~~ ~)~~~~~~~~ ~~~~~~~~~~ 8881 ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~(~~~~~~ ~~~~~~~~~~ 8941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~)~~|~~~~ 9001 ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~|~~~ ~|~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ 9061 ~~(~~~~~~~ )~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~|~~~~~ ~|~~~~~~~| 9121 ~~~~~~~~~~ ~~~~~(~~~~ ~~~)~~~~~~ ~~~~~~~~|~ ~~~~(~~~~~ )~~~~~~~~~ 9181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~|~~~~(~~ ~~)~~~~~~~ ~~~~~~~~~~ 9241 ~~|~~~~~~~ ~~|~|<~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9301 >~~~~~~~~~ ~~-~~~~~~~ ~~~-~~~~~~ ~~~~(~~~~~ ~~(~~~~~)~ ~~~~~)~~~~ 9361 ~~~~~~<~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~>~ ~~~~~~~~~~ ~~~~~~~~~~ 9421 ~|~~~~~~~~ (~~~~~)<~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~> 9541 ~~~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9601 ~~~~~~~~~~ ~~~~~~~~~~ (~~~~~~~~~ ~~~~~)~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9661 ~~~~~~~~~~ ~~~~~~~<~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~>~~| ~~~~~~(~~~ )~~~~~~~~~ ~~~~~~~|~~ 9961 ~~~(~~~~~~ ~~~)~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10021 ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~~~ 10141 ~~~~~~~~~~ ~~~~~~~~~~ ~)~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10201 ~~~~~~~~~~ ~|~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10321 ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ||||| // LOCUS (2)-EUGLEN 10775 bp RNA RNA 09-JAN-1999 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 10775) Corresponding GenBank entry: DIVIDER BASE COUNT 0 a 0 c 0 g 0 t 10775 others ORIGIN 1 |......... .......... .......... .......... .......... .......... 61 .......... .......... .......... .......... .......... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......... .......... .......... .......... 241 .......... .......... .......... .......... .......... .......... 301 .......... .......... .......... .......... .......... .......... 361 .......... .......... .......... .......... .......... .......... 421 .......... .......... .......... .......... .......... .......... 481 .......... .......... .......... .......... .......... .......... 541 .......... .......... .......... .......... .......... .......... 601 .......... .......... .......... .......... .......... .......... 661 .......... .......... .......... .......... .......... .......... 721 .......... .......... .......... .......... .......... .......... 781 .......... .......... .......... .......... .......... .......... 841 .......... .......... .......... .......... .......... .......... 901 .......... .......... .......... .......... .......... .......... 961 .......... .......... .......... .......... .......... .......... 1021 .......... .......... .......... .......... .......... .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .......... .......... .......... .......... .......... 1201 .......... .......... .......... .......... .......... .......... 1261 .......... .......... .......... .......... .......... .......... 1321 .......... .......... .......... .......... .......... .......... 1381 .......... .......... .......... .......... .......... .......... 1441 .......... .......... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... .......... .......... .......... .......... .......... 1621 .......... .......... .......... .......... .......... .......... 1681 .......... .......... .......... .......... .......... .......... 1741 .......... .......... .......... .......... .......... .......... 1801 .......... .......... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .......... .......... 1921 .......... .......... .......... .......... .......... .......... 1981 .......... .......... .......... .......... .......... .......... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... .......... .......... .......... .......... .......... 2161 .......... .......... .......... .......... .......... .......... 2221 .......... .......... .......... .......... .......... .......... 2281 .......... .......... .......... .......... .......... .......... 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... .......... 2701 .......... .......... .......... .......... .......... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... .......... 2881 .......... .......... .......... .......... .......... .......... 2941 .......... .......... .......... .......... .......... .......... 3001 .......... .......... .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .......... .......... 3181 .......... .......... .......... .......... .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .......... .......... .......... 3361 .......... .......... .......... .......... .......... .......... 3421 .......... .......... .......... .......... .......... .......... 3481 .......... .......... .......... .......... .......... .......... 3541 .......... .......... .......... .......... .......... .......... 3601 .......... .......... .......... .......... .......... .......... 3661 .......... .......... .......... .......... .......... .......... 3721 .......... .......... .......... .......... .......... .......... 3781 .....-.... .......... .......... .......... .......... .......... 3841 .......... .......... .......... .......... .......... .......... 3901 .......... .......... .......... .......... .......... .......... 3961 .......... .......... .......... .......... .......... .......... 4021 .......... .......... .......... .......... .......... .......... 4081 .......... .......... .......... .......... .......... .......... 4141 .......... .......... .......... .......... .......... .......... 4201 .......... .......... .......... .......... .......... .......... 4261 .......... .......... .......... .......... .......... .......... 4321 .......... .......... .......... .......... .......... .......... 4381 .......... .......... .......... .......... .......... .......... 4441 .......... .......... .......... .......... .......... .......... 4501 .......... .......... .......... .......... .......... .......... 4561 .......... .......... .......... .......... .......... .......... 4621 .......... .......... .......... .......... .......... .......... 4681 .......... .......... .......... .......... .......... .......... 4741 .......... .......... .......... .......... .......... .......... 4801 .......... .......... .......... ..)....... .......... .......... 4861 .......... .......... .......... .......... .......... .......... 4921 .......... .......... .......... .......... .......... .......... 4981 .......... .......... .......... .......... .......... .......... 5041 .......... .......... .......... .......... .......... .......... 5101 .......... .......... .......... .......... .......... .......... 5161 .......... .......... .......... .......... .......... .......... 5221 .......... .......... .......... .......... .......... .......... 5281 .......... .......... .......... .......... .......... .......... 5341 .......... .......... .......... .......... .......... .......... 5401 .......... .......... .......... .......... .......... .......... 5461 .......... .......... .......... .......... .......... .......... 5521 .......... .......... .......... .......... .......... .......... 5581 .......... .......... .......... .......... .......... .......... 5641 .......... .......... .......... .......... .......... .......... 5701 .......... .......... .......... .......... .......... .......... 5761 .......... .......... .......... .......... .......... .......... 5821 .......... .......... .......... .......... .......... .......... 5881 .......... .......... .......... .......... .......... .......... 5941 .......... .......... .......... .......... .......... .......... 6001 .......... .......... .......... .......... .......... .......... 6061 .......... .......... .......... .......... .......... .......... 6121 .......... .......... .......... .......... .......... .......... 6181 .......... .......... .......... .......... .......... .......... 6241 .......... .......... .......... .......... .......... .......... 6301 .......... .......... .......... .......... .......... .......... 6361 .......... .......... .......... .......... .......... .......... 6421 .......... .......... .......... .......... .......... .......... 6481 .......... .......... .......... .......... .......... .......... 6541 .......... .......... .......... .......... .......... .......... 6601 .......... .......... .......... .......... .......... .......... 6661 .......... .......... .......... .......... .......... .......... 6721 .......... .......... .......... .......... .......... .......... 6781 .......... .......... .......... .......... .......... .......... 6841 .......... .......... .......... .......... .......... .......... 6901 .......... .......... .......... .......... .......... .......... 6961 .......... .......... .......... .......... .......... .......... 7021 .......... .......... .......... .......... .......... .......... 7081 .......... .......... .......... .......... .......... .......... 7141 .......... .......... .......... .......... .......... .......... 7201 .......... .......... .......... .......... .......... .......... 7261 .......... .......... .......... .......... .......... .......... 7321 .......... .......... .......... .......... .......... .......... 7381 .......... .......... .......... .......... .......... .......... 7441 .......... .......... .......... .......... .......... .......... 7501 .......... .......... .......... .......... .......... .......... 7561 .......... .......... .......... .......... .......... .......... 7621 .......... .......... .......... .......... .......... .......... 7681 .......... .......... .......... .......... .......... .......... 7741 .......... .......... .......... .......... .......... .......... 7801 .......... .......... .......... .......... .......... .......... 7861 .......... .......... .......... .......... .......... .......... 7921 .......... .......... .......... .......... .......... .......... 7981 .......... .......... .......... .......... .......... .......... 8041 .......... .......... .......... .......... .......... .......... 8101 .......... .......... .......... .......... .......... .......... 8161 .......... .......... .......... .......... .......... .......... 8221 .......... .......... .......... .......... .......... .......... 8281 .......... .......... .......... .......... .......... .......... 8341 .......... .......... .......... .......... .......... .......... 8401 .......... .......... .......... .......... .......... .......... 8461 .......... .......... .......... .......... .......... .......... 8521 .......... .......... .......... .......... .......... .......... 8581 .......... .......... .......... .......... .......... .......... 8641 .......... .......... .......... .......... .......... .......... 8701 .......... .......... .......... .......... .......... .......... 8761 .......... .......... .......... .......... .......... .......... 8821 .......... .......... .......... .......... .......... .......... 8881 .......... .......... .......... .......... .......... .......... 8941 .......... .......... .......... .......... .......... .......... 9001 .......... .......... .......... .......... .......... .......... 9061 .......... .......... .......... .......... .......... .......... 9121 .......... .......... .......... .......... .......... .......... 9181 .......... .......... .......... .......... .......... .......... 9241 .......... .......... .......... .......... .......... .......... 9301 .......... .......... .......... .......... .......... .......... 9361 .......... .......... .......... .......... .......... .......... 9421 .......... .......... .......... .......... .......... .......... 9481 .......... .......... .......... .......... .......... .......... 9541 .......... .......... .......... .......... .......... .......... 9601 .......... .......... .......... .......... .......... .......... 9661 .......... .......... .......... .......... .......... .......... 9721 .......... .......... .......... .......... .......... .......... 9781 .......... .......... .......... .......... .......... .......... 9841 .......... .......... .......... .......... .......... .......... 9901 .......... .......... .......... .......... .......... .......... 9961 .......... .......... .......... .......... .......... .......... 10021 .......... .......... .......... .......... .......... .......... 10081 .......... .......... .......... .......... .......... .......... 10141 .......... .......... .......... .......... .......... .......... 10201 .......... .......... .......... .......... .......... .......... 10261 .......... .......... .......... .......... .......... .......... 10321 .......... .......... .......... .......... .......... .......... 10381 .......... .......... .......... .......... .......... .......... 10441 .......... .......... .......... .......... .......... .......... 10501 .......... .......... .......... .......... .......... .......... 10561 .......... .......... .......... .......... .......... .......... 10621 .......... .......... .......... .......... .......... .......... 10681 .......... .......... .......... .......... .......... .......... 10741 .......... .......... .......... ||||| // LOCUS mt.T.borre 10775 bp RNA RNA 14-APR-1995 DEFINITION Kinetoplast Trypanoplasma borreli.; Putative cryptogene, G-rich region; Cytochrome C oxidase subunit III; Large subunit ribosomal RNA; 5' pre-edited region of CYb mRNA; 3' pre-edited region of CYb mRNA; Pre-edited region of pan-edited mRNA for RPS12; apocytochrome b, non-edited part of mRNA. ACCESSION U14181 KEYWORDS Putative cryptogene, G-rich region; Cytochrome C oxidase subunit III; Large subunit ribosomal RNA; 5' pre-edited region of CYb mRNA; 3' pre-edited region of CYb mRNA; Pre-edited region of pan-edited mRNA for RPS12; apocytochrome b, non-edited part of mRNA. SOURCE Kinetoplast Trypanoplasma borreli. ORGANISM Kinetoplast Trypanoplasma borreli. REFERENCE 1 (bases 1 to 4348) AUTHORS Maslov,D.A. and Simpson,L. TITLE cryptobiid kinetoplastid protozoan Trypanoplasma borreli RNA editing and mitochondrial genomic organization in the JOURNAL Mol. Cell. Biol. 14 (12), 8174-8182 (1994) STANDARD No information REFERENCE 2 (bases 1 to 4348) AUTHORS Maslov,D.A. TITLE Direct Submission JOURNAL Submitted (31-AUG-1994) Dmitri A. Maslov, Biology, University of California at Los Angeles, 405 Hilgard Ave, Los Angeles, CA 90024-1606, USA STANDARD No information COMMENTS Sequence information (bases 1 to 10775) Corresponding GenBank entry: U14181 BASE COUNT 482 a 115 c 70 g 634 t 9474 others ORIGIN 1 |~~~~~~~~~ gaaaauuuga uaacauuuuu auuuuacuau uucuguauuu uaacuuauua 61 uauuaauuua accuuuaaaa uuuuuaucuu aaaauuuuau aaacuuuacu ucuuaaaaaa 121 uauauuuaaa uuuaaauuuu ggaguuuuuu uuaaucacua auauuuucua auuuuauauu 181 uuuauuuu-- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 |--------| ---------- -|-------- ---------- ---------| -----(---- 361 ---------) -|-------- -------|-- -------(-- ---------- ---------- 421 -------)-- ---------- ---------- ---------- ---------- -----(---- 481 )---|----- --(-----)- ---------- ---------- ---------- -(------)- 541 ---------- ---------- ---<------ ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- ---------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 ---------- ---------- ---------- ---------- ---------- ---------- 781 ---------- ---------- ---------- -------->- ---------- |--------- 841 ---(----)- ---------- ---------- ---------- ---------- ---------- 901 ------(--- --)------- |--------- -------(-- ----)----- ---------- 961 -------<-- ---------- ---------- ---------- ---------- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- --->------ 1201 ---------- ---------- ---------- ---------< ---------- ---------- 1261 ---------- ---------- ---------> (------)-- ---------- ---|-(---) 1321 -------(-- -----)---- ---------- ---------- ---------- --<------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- >--------- ------(--- ---------- 1561 -------)-- ---------- ---------- -(-------) ---------- ---------- 1621 ---------- ---------- ---------- ---------( ------)--- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- -(-------) ---------- ---------- ---------- ---------- 1801 ---------- ---------- --<------- ---------- ---------- ---------- 1861 ----->---- ---------- --------<- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------> (--------- 2041 --)------- ---------- ------(--- -----)---- |--------- ---------- 2101 ---------- ---------- -------(-- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- -)-------- ---------- 2521 ----(----- )--------- --(------) ---------- ---------- ---------- 2701 ---------- ---------- ---uuaauua uuu-aca-ac uuu------- ---------- 2761 -(-------- ---------- ---------- ---------- -----uaaa) ---------- 2821 --aaau-A-C UG-UAUAUA( GUUACAA-U) UAUUA-CACU --uaaaaau- uuaauuc-cu 2881 uu(u-acau) agc------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ------ ---------- 3061 --------|- ---------- ---------- ---------- ---------< ---------- 3121 ---------- ---------- ---------- ---------- ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---->----- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- -<-------- ---------- ---------a 3721 aacuaacaac uuaauuuuau a-cuauua-a aauaacuugu au>uaauu-u cau(auaaa- 3781 -u-u)-uuga -uuuu|u(u- ug)-|cuauu u(--uuuaaa )aa|-aau-- ------<--- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ->-------- -------|-- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- ---------- 4021 ---------- ---------- ---------- ---------- ---------- ---------- 4081 -------|-- ---------| -------|-- ---------- ---------- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- ---------- ---------- ---------- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- --------(- 4441 ------)--- ---------- ---------- --------|- ---------- ---------- 4501 ---------- ---------- (-------)< ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ------->-- ---------- -|-------| ---------- ---------- 4681 --|------- ---------- ---------- (--------- ---------- ---------- 4741 ---------- -----)---- ------|--- ---------- ---------- -|-------- 4801 ---------- ---------- ----(----- --)---|--- ---------- ---------- 4861 ---------- ---------- ---------- -------(-- ---------- ------)<-- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 >--------- ---------- ---------- ----(----- ---------- ---------- 5041 ---------- ---------- ----)----- |-----|--- ---------- |--------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ---------- ---------- 5221 ---------- ---------- ---------- ---------- ---------- ---------- 5281 ---------- ---------- ---------- ---------- ---------- ---------- 5341 ---------- ---------- ---------- ---------- ---------- ---------- 5401 ---------- ---------- ---------- ---------- ---------- ---------- 5461 -----(---- ------)--- ---|------ --------|- ---------- -(-----)-- 5521 |--------- ---------- ---------- ---------- ---------- ---------- 5581 --<------- ---------- ---------- ---------- ---------- ---------- 5641 ---------- ---------- ------->-- ---------- ---------- ------ ---------- ---------- ---------- 6481 ---------- ---------- ---------- ---------- ---------- ---------- 6541 -uuuauuuau auacacuuuu -uuau-uaa- ---------- ---------- ---------- 6601 ---------- ---------- ---------- ---------- ----<----- ---------- 6661 ---------- ---------- ---------- ---------- ---------- ---------- 6721 ---------- ---------- ---------u uuauucauaa aaa>------ ---------- 6781 ------(--- )--------- uauuuaaa|u cc---aAG-U UU(AUUUA)A UG-CUUu-uc 6841 uauuug|--- ---------- ---------- (-uaauuua- ------)--- ---------- 6901 ---------- uaaauuuuu- uuuugu- --------|- ---------- ---------- 7021 ---------- --(------- ---------- ---------- ---------- ---------- 7081 ---------- ---------- ---------- ---)------ ---------- ---------| 7141 ---------- --|----|-- -------(-- -----)---- --|U(AUU)- UG-UAGCUAA 7201 AUA-AU-U-U |AUUAGC(-U AAUU-)ACUA AC|UU-guuc ca--cuaa-u u-aauauuua 7261 u--------- ---------- -------au- -auauuauac uauu-au-ac auu-aaauaa 7321 cu|a|auacg ua-uu(u--a aua-u)aaua uuu----AUA CAUGUUAAAG GGCAAG-UCC 7381 UUU-UU-|-U ACUUU--ACA UU|--U-AAU UUU--A---| <--------- ---------- 7441 ---------- ---------- --->------ ---------- ---------- ---------- 7501 ---------- ---------- ---------- --<--aaauu uucauauuau aaau------ 7561 ---------- ---------- ---------- ---------- ---------- ---------- 7621 ---------- ---------- ---------> --(------- -)-------- ---------- 7681 ---------- -------|-- ---------- ---------- ---------- ---------- 7741 -----(---- ----)----- ---------- ---------- ---------- --------<- 7801 ---------- ---------- ---------- ---------- ---------- ---------- 7861 ---------- ---------- ---------- ---------- ---------- ---------- 7921 ---------- ---------- ---------- ---------- ---------- ---------- 7981 ---------- ---------- ---------- ---------- ---------- ---------- 8041 ---------- ---------- ---------- ---------- ---------- ---------- 8101 ---------- ---------- ----->---- ---UA-A-AA -AUU-GU-AU GUUUGGUUG( 8161 GGA)UA-ACA U|AAUAUC(- --------UU AUUAUAUUA- )UUUA-AA|a |a|uaga-|< 8221 ucuuaauuau uagca----- ---------- ---------- ---------- ---------- 8281 ---------- ---------- ---------- ---------- ---------- ---------- 8341 ---------- ---------- ---------- ---------- ---------- ->-------- 8401 ---|------ ------<--- ---------- ---------- ---------- ---------- 8461 ---------- ---------- ---------- ---------- ---------- ---------- 8521 ---------- ---------- ---------- ---------- ---------- ---------- 8581 ---------- ---------- ---------- ---------- ---------- ---------- 8641 ---------- ---------> (--------- )--------- ---------- ---------- 8701 ---------- ---------- ---------- -------|-- (-|-----)- ---------- 8761 ---------- ---------( ---------- )--------- ---------- ---------- 8821 ---------- ---------- ---------- ---(------ -)-------- ---------- 8881 -|-------- ---------- ---------- ---------- ---(------ ---------- 8941 ---------- ---------- ---------- ---------- ---------- --)--|---- 9001 --------a- |uUAUAUAAG UCUUAA|AAA G|GUUAACAA |G-CAU-a-c ---------- 9061 --(u-uugua )--------- -----uaAAU GU-GUUUCUU CGUC|UA--C U|U|AUGUA| 9121 uuauu-aauu a----(-uua aua)---uac uu---aaa|A AAGU(UGUUC )ACUUU-ucu 9181 a---UACAU- --UCAUUAGU UGGGUUAAAA UC|GU-U(GU AA)AGCAGAU UUUUUAAUAU 9241 UU|ACUUA-U UU|U|<---- ---------- ---------- ------ucuu cuuacaaac- 9301 >--------- ---------- ----ucc-gu acu-(UAGU- AC(-GAGA)G GACU-)auau 9361 u--uu-- ---------- ---------- 9421 -|-------- (-----) 9541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9601 ~~~~~~~~~~ ~~~~~~~~~~ (~~~~~~~~~ ~~~~~)~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9661 ~~~~~~~~~~ ~~~~~~~<~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~>~~| ~~~~~~(~~~ )~~~~~~~~~ ~~~~~~~|~~ 9961 ~~~(~~~~~~ ~~~)~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10021 ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~~~ 10141 ~~~~~~~~~~ ~~~~~~~~~~ ~)~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10201 ~~~~~~~~~~ ~|~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10321 ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ||||| // LOCUS mt.C.oncop 10775 bp RNA RNA 11-JAN-191 DEFINITION Kinetoplast Crithidia oncopelti. ACCESSION No information KEYWORDS No information. SOURCE Kinetoplast Crithidia oncopelti. ORGANISM Kinetoplast Crithidia oncopelti. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 10775) Corresponding GenBank entry: X51736 ID MICO12SR standard; DNA; ORG; 1200 BP. XX AC X51736; XX DT 25-FEB-1991 (Rel. 27; Last updated; Version 3) DT 05-JUN-1990 (Rel. 24; Created) XX DE Crithidia oncopelti kinetoplast 12S ribosomal RNA XX KW 12S ribosomal RNA; ribosomal RNA. XX OS Crithidia oncopelti OC Eukaryota; Animalia; Protozoa; Sarcomastigophora; Mastigophora; OC Kinetoplastida; Trypanosomatina; Trypanosomatidae. XX OG Kinetoplast XX RN [1] RB 1-1200 RA Maslov D.A.; RT ; RL Submitted (16-FEB-1990) to the EMBL Data Library by: RL Maslov D.A., Dept. of Mol. Bio., Faculty of Biology, M. V. RL Lomonosov State University, 119899 Moscow, U S S R. XX RN [2] RB 1-1200 RA Horvath A., Maslov D.A., Kolesnikov A.A.; RT "The nucleotide sequence of the 12S ribosomal RNA gene from RT kinetoplast DNA of the protozoan Crithidia oncopelti."; RL Nucleic Acids Res. 18:2811-2811(1990). XX CC *source: strain=S-068; XX FH Key Location/Qualifiers FH FT rRNA 57..1180 FT /note="12S ribosomal RNA" XX SQ Sequence 1200 BP; 502 A; 85 C; 109 G; 504 T; 0 other; BASE COUNT 473 a 82 c 101 g 468 t 9651 others ORIGIN 1 |~~~~~~~~~ aauuaaucau auuuuauaaa uuuauaguaa agaaguauua uuauauuuau 61 uauuuauauu uuguauuuua auuuauuuaa acauuuauag uauaaauugu uauauauuua 121 aauuuuaaau uuguuguuuu auauuuaguu ucauauuuua guuauaauaa ccaaucauau 181 c--------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 |--------| ---------- -|-------- ---------- ---------| -----(---- 361 ---------) -|-------- -------|-- -------(-- ---------- ---------- 421 -------)-- ---------- ---------- ---------- ---------- -----(---- 481 )---|----- --(-----)- ---------- ---------- ---------- -(------)- 541 ---------- ---------- ---<------ ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- ---------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 ---------- ---------- ---------- ---------- ---------- ---------- 781 ---------- ---------- ---------- -------->- ---------- |--------- 841 ---(----)- ---------- ---------- ---------- ---------- ---------- 901 ------(--- --)------- |--------- -------(-- ----)----- ---------- 961 -------<-- ---------- ---------- ---------- ---------- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- --->------ 1201 ---------- ---------- ---------- ---------< ---------- ---------- 1261 ---------- ---------- ---------> (------)-- ---------- ---|-(---) 1321 -------(-- -----)---- ---------- ---------- ---------- --<------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- >--------- ------(--- ---------- 1561 -------)-- ---------- ---------- -(-------) ---------- ---------- 1621 ---------- ---------- ---------- ---------( ------)--- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- -(-------) ---------- ---------- ---------- ---------- 1801 ---------- ---------- --<------- ---------- ---------- ---------- 1861 ----->---- ---------- --------<- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------> (--------- 2041 --)------- ---------- ------(--- -----)---- |--------- ---------- 2101 ---------- ---------- -------(-- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- -)-------- ---------- 2521 ----(----- )-----<--- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ----->---- --(------) ---------- ---------- ---------- 2701 --a-aaaucu -a-aaauu-u au-ugAACUG UUA-UAA-AU AGU------- ---------- 2761 -(-------- ---------- ---------- ---------- ----uuauu) ---------- 2821 --AUUU-U-U UG-UUUAAU( GUUUAAA-U) AUUUaACUA- --UUAAAGU- UACAGUU-Gu 2881 uc(u-auau) gua-ccua-a u-aaaaauag uaagauaauu u--------- ---------- 2941 ---------- ---------- ------ ---------- 3061 --------|- ---------- ---------- ---------- ---------< ---------- 3121 ---------- ---------- ---------- ---------- ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---->----- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- -<-------- ---------- ---------a 3721 auuaaaaaau aauuauuca- ---gcaauca aaugaauauu au>gaaaa-a ucu(aaaaa- 3781 -u-u)-aaau -uauu|-(-- -c)-|ugcua a(--aaaaua )aa|-uaa-- ------<--- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ->-------- -------|-- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- ---------- 4021 ---------- ---------- ---------- ---------- ---------- ---------- 4081 -------|-- ---------| -------|-- ---------- ---------- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- ---------- ---------- ---------- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- --------(- 4441 ------)--- ---------- ---------- --------|- ---------- ---------- 4501 ---------- ---------- (-------)< ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ------->-- ---------- -|-------| ---------- ---------- 4681 --|------- ---------- ---------- (--------- ---------- ---------- 4741 ---------- -----)---- ------|--- ---------- ---------- -|-------- 4801 ---------- ---------- ----(----- --)---|--- ---------- ---------- 4861 ---------- ---------- ---------- -------(-- ---------- ------)<-- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 >--------- ---------- ---------- ----(----- ---------- ---------- 5041 ---------- ---------- ----)----- |-----|--- ---------- |--------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ---------- ---------- 5221 ---------- ---------- ---------- ---------- ---------- ---------- 5281 ---------- ---------- ---------- ---------- ---------- ---------- 5341 ---------- ---------- ---------- ---------- ---------- ---------- 5401 ---------- ---------- ---------- ---------- ---------- ---------- 5461 -----(---- ------)--- ---|------ --------|- ---------- -(-----)-- 5521 |--------- ---------- ---------- ---------- ---------- ---------- 5581 --<------- ---------- ---------- ---------- ---------- ---------- 5641 ---------- ---------- ------->-- ---------- ---------- ------ ---------- ---------- ---------- 6481 ---------- ---------- ---------- ---------- ---------- ---------- 6541 -uuuuuuaaa aauauauaua -uguu-guu- ---------- ---------- ---------- 6601 ---------- ---------- ---------- ---------- ----<----- ---------- 6661 ---------- ---------- ---------- ---------- ---------- ---------- 6721 ---------- ---------- ---------- aauaaauuuu uaa>------ ---------- 6781 ------(--- )--------- -UAUUUUA|A AA---GCG-U UU(AUUAA)A UG-CGUU-CG 6841 UCUAAG|--- ---------- ---------- (-auuauua- ------)--- ---------- 6901 ---------- UUUAAGAUU- aUUCUA- --------|- ---------- ---------- 7021 ---------- --(------- ---------- ---------- ---------- ---------- 7081 ---------- ---------- ---------- ---)------ ---------- ---------| 7141 ---------- --|----|-- -------(-- -----)---- --|U(UUU)- AG-UAGCAUA 7201 AUA-AU-U-U |GUUAAC(-U AAUU-)AUUA AA|GU-guuc ca-uAGAA-A A-UUUUGAAG 7261 UU-------- ---------- -------Aa- -aacaaacaa aaua-ac-ca au--aaauua 7321 aa|a|uaaaa au-uu(u--a aua-a)aaau uaA----AAA AUUAAAAUAG GGCAAG-UCC 7381 UAC-UC-|-U CCUUU--ACA AA|--G-AGA ACA--U---| <--------- ---------- 7441 ---------- ---------- --->------ ---------- ---------- ---------- 7501 ---------- ---------- ---------- --<---uuaa u--------- ---------- 7561 ---------- ---------- ---------- ---------- ---------- ---------- 7621 ---------- ---------- ---------> --(------- -)-------- ---------- 7681 ---------- -------|-- ---------- ---------- ---------- ---------- 7741 -----(---- ----)----- ---------- ---------- ---------- --------<- 7801 ---------- ---------- ---------- ---------- ---------- ---------- 7861 ---------- ---------- ---------- ---------- ---------- ---------- 7921 ---------- ---------- ---------- ---------- ---------- ---------- 7981 ---------- ---------- ---------- ---------- ---------- ---------- 8041 ---------- ---------- ---------- ---------- ---------- ---------- 8101 ---------- ---------- ----->---- ---AU-G-UA -AUU-GU-AU GUUUGAUUG( 8161 GGG)CA-AUA C|UAUAUC(- --------UA UUUAUAUAG- )AAAA-AG|a |-|-----|< 8221 acuauaauaa uugaa----- ---------- ---------- ---------- ---------- 8281 ---------- ---------- ---------- ---------- ---------- ---------- 8341 ---------- ---------- ---------- ---------- ---------- ->-------- 8401 ---|------ ------<--- ---------- ---------- ---------- ---------- 8461 ---------- ---------- ---------- ---------- ---------- ---------- 8521 ---------- ---------- ---------- ---------- ---------- ---------- 8581 ---------- ---------- ---------- ---------- ---------- ---------- 8641 ---------- ---------> (--------- )--------- ---------- ---------- 8701 ---------- ---------- ---------- -------|-- (-|-----)- ---------- 8761 ---------- ---------( ---------- )--------- ---------- ---------- 8821 ---------- ---------- ---------- ---(------ -)-------- ---------- 8881 -|-------- ---------- ---------- ---------- ---(------ ---------- 8941 ---------- ---------- ---------- ---------- ---------- --)--|---- 9001 --------a- |uAAUAAAAG GUUCGA|GCA G|GUUAACAA |G-CAU-U-A ---------- 9061 --(U--UAC- )--------- -----UAAAU GU-GUUUCAU CGUC|UA--C U|U|AUUGC| 9121 u--------- -----(---u aa-)------ -------a|U UGAU(UGUUC )AUCAA-aau 9181 u---GCAAU- --UCGUUAGU UGGGUUAAAA UC|GU-U(GU AA)AGCAGAU UUGUUUAUAU 9241 AU|UUAAU-U UG|U|<---- ---------- ---------- ------auua aaaguuaaa- 9301 >--------- ---------- ----AUC-AA AAU-(UAGU- AC(-GCAA)G GAUC-)UUUU 9361 ---AU-<~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~>~ ~~~~~~~~~~ ~~~~~~~~~~ 9421 ~|~~~~~~~~ (~~~~~)<~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~> 9541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9601 ~~~~~~~~~~ ~~~~~~~~~~ (~~~~~~~~~ ~~~~~)~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9661 ~~~~~~~~~~ ~~~~~~~<~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~>~~| ~~~~~~(~~~ )~~~~~~~~~ ~~~~~~~|~~ 9961 ~~~(~~~~~~ ~~~)~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10021 ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~~~ 10141 ~~~~~~~~~~ ~~~~~~~~~~ ~)~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10201 ~~~~~~~~~~ ~|~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10321 ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ||||| // LOCUS mt.C.fasci 10775 bp RNA RNA ~?~???? DEFINITION Kinetoplast Crithidia fasciculata. ACCESSION No information KEYWORDS No information. SOURCE Kinetoplast Crithidia fasciculata. ORGANISM Kinetoplast Crithidia fasciculata. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Organism information Culture collection: ? Sequence information (bases 1 to 10775) Corresponding GenBank entry: X02548 Phylo:Mitochondria,Kinetoplast,Crithidia BASE COUNT 462 a 74 c 110 g 495 t 9634 others ORIGIN 1 |~~~~~~~~~ uuuaucauuu auauuaaaaa auaauaaggu cgcuauauau uguaa--aag 61 uguuaauuua aauuuugauu auguuuuuau uuaauuuuau uuauacauau uaauuauaau 121 auauuuaaau auuaaauuug uuguuuuaua uuuaguuuaa aauuuaauau auaauuauaa 181 acaauugu-- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 |--------| ---------- -|-------- ---------- ---------| -----(---- 361 ---------) -|-------- -------|-- -------(-- ---------- ---------- 421 -------)-- ---------- ---------- ---------- ---------- -----(---- 481 )---|----- --(-----)- ---------- ---------- ---------- -(------)- 541 ---------- ---------- ---<------ ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- ---------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 ---------- ---------- ---------- ---------- ---------- ---------- 781 ---------- ---------- ---------- -------->- ---------- |--------- 841 ---(----)- ---------- ---------- ---------- ---------- ---------- 901 ------(--- --)------- |--------- -------(-- ----)----- ---------- 961 -------<-- ---------- ---------- ---------- ---------- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- --->------ 1201 ---------- ---------- ---------- ---------< ---------- ---------- 1261 ---------- ---------- ---------> (------)-- ---------- ---|-(---) 1321 -------(-- -----)---- ---------- ---------- ---------- --<------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- >--------- ------(--- ---------- 1561 -------)-- ---------- ---------- -(-------) ---------- ---------- 1621 ---------- ---------- ---------- ---------( ------)--- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- -(-------) ---------- ---------- ---------- ---------- 1801 ---------- ---------- --<------- ---------- ---------- ---------- 1861 ----->---- ---------- --------<- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------> (--------- 2041 --)------- ---------- ------(--- -----)---- |--------- ---------- 2101 ---------- ---------- -------(-- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- -)-------- ---------- 2521 ----(----- )-----<--- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ----->---- --(------) ---------- ---------- ---------- 2701 -----cauuu aa-aguuu-u aa-ugAACUG UUA-UUU-AU AGU------- ---------- 2761 -(-------- ---------- ---------- ---------- ----ugaua) ---------- 2821 --UUUU-U-U AG-UUUAAU( GUUUAAA-U) AUUUaUCUA- --AUAAUGU- UACAGUU-Gu 2881 uc(u-auau) gua-ccaa-u a-agaaauag uaaaauuauu u--------- ---------- 2941 ---------- ---------- ------ ---------- 3061 --------|- ---------- ---------- ---------- ---------< ---------- 3121 ---------- ---------- ---------- ---------- ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---->----- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- -<-------- ---------- ---------a 3721 uuuaauaaau aguuauuuga a-uauuauau uacaaauauu au>gaagu-u uuu(aaaaa- 3781 -u-u)-aaau -uuuu|a(a- uc)-|uauua u(--aauaua )au|-uug-- ------<--- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ->-------- -------|-- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- ---------- 4021 ---------- ---------- ---------- ---------- ---------- ---------- 4081 -------|-- ---------| -------|-- ---------- ---------- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- ---------- ---------- ---------- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- --------(- 4441 ------)--- ---------- ---------- --------|- ---------- ---------- 4501 ---------- ---------- (-------)< ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ------->-- ---------- -|-------| ---------- ---------- 4681 --|------- ---------- ---------- (--------- ---------- ---------- 4741 ---------- -----)---- ------|--- ---------- ---------- -|-------- 4801 ---------- ---------- ----(----- --)---|--- ---------- ---------- 4861 ---------- ---------- ---------- -------(-- ---------- ------)<-- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 >--------- ---------- ---------- ----(----- ---------- ---------- 5041 ---------- ---------- ----)----- |-----|--- ---------- |--------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ---------- ---------- 5221 ---------- ---------- ---------- ---------- ---------- ---------- 5281 ---------- ---------- ---------- ---------- ---------- ---------- 5341 ---------- ---------- ---------- ---------- ---------- ---------- 5401 ---------- ---------- ---------- ---------- ---------- ---------- 5461 -----(---- ------)--- ---|------ --------|- ---------- -(-----)-- 5521 |--------- ---------- ---------- ---------- ---------- ---------- 5581 --<------- ---------- ---------- ---------- ---------- ---------- 5641 ---------- ---------- ------->-- ---------- ---------- ------ ---------- ---------- ---------- 6481 ---------- ---------- ---------- ---------- ---------- ---------- 6541 -auuuuuaaa aauacauaua -uauu-guu- ---------- ---------- ---------- 6601 ---------- ---------- ---------- ---------- ----<----- ---------- 6661 ---------- ---------- ---------- ---------- ---------- ---------- 6721 ---------- ---------- ---------- aauaaaauua uua>------ ---------- 6781 ------(--- )--------- -AGUUUCA|A AA---GCG-U UU(AUUAA)A UG-CGCU-UG 6841 UCUAAG|--- ---------- ---------- (-uuuuuua- ------)--- ---------- 6901 ---------- UUUAAGAUA- aUUCUU- --------|- ---------- ---------- 7021 ---------- --(------- ---------- ---------- ---------- ---------- 7081 ---------- ---------- ---------- ---)------ ---------- ---------| 7141 ---------- --|----|-- -------(-- -----)---- --|U(AUA)- AG-UAGCAUA 7201 GUA-AU-U-U |GUUAAC(-U AAUU-)AUUA AA|AU-guuc ca-cAGAA-A A-UUUUAAAA 7261 UU-------- ---------- -------Au- -aacaaucaa agua-aa-ua au--aaauua 7321 aa|a|uaaaa au-uu(u--a aaa-a)aaau uaA----AAA AUUAAAAUAG GGCAAG-UCC 7381 UAC-UC-|-U CCUUU--ACA AA|--G-AGA ACA--U---| <--------- ---------- 7441 ---------- ---------- --->------ ---------- ---------- ---------- 7501 ---------- ---------- ---------- --<-auuuaa u--------- ---------- 7561 ---------- ---------- ---------- ---------- ---------- ---------- 7621 ---------- ---------- ---------> --(------- -)-------- ---------- 7681 ---------- -------|-- ---------- ---------- ---------- ---------- 7741 -----(---- ----)----- ---------- ---------- ---------- --------<- 7801 ---------- ---------- ---------- ---------- ---------- ---------- 7861 ---------- ---------- ---------- ---------- ---------- ---------- 7921 ---------- ---------- ---------- ---------- ---------- ---------- 7981 ---------- ---------- ---------- ---------- ---------- ---------- 8041 ---------- ---------- ---------- ---------- ---------- ---------- 8101 ---------- ---------- ----->---- ---AU-G-UA -AUU-GU-AU GUUUGAUUG( 8161 GGG)CA-AUA C|UAUAUC(- --------UU AUUAUAUAG- )AAAA-AG|a |-|-----|< 8221 acuauacuua uugaa----- ---------- ---------- ---------- ---------- 8281 ---------- ---------- ---------- ---------- ---------- ---------- 8341 ---------- ---------- ---------- ---------- ---------- ->-------- 8401 ---|------ ------<--- ---------- ---------- ---------- ---------- 8461 ---------- ---------- ---------- ---------- ---------- ---------- 8521 ---------- ---------- ---------- ---------- ---------- ---------- 8581 ---------- ---------- ---------- ---------- ---------- ---------- 8641 ---------- ---------> (--------- )--------- ---------- ---------- 8701 ---------- ---------- ---------- -------|-- (-|-----)- ---------- 8761 ---------- ---------( ---------- )--------- ---------- ---------- 8821 ---------- ---------- ---------- ---(------ -)-------- ---------- 8881 -|-------- ---------- ---------- ---------- ---(------ ---------- 8941 ---------- ---------- ---------- ---------- ---------- --)--|---- 9001 --------a- |uAAUAAAAG GUUCGA|GCA G|GUUAACAA |G-CAU-U-A ---------- 9061 --(A--UAC- )--------- -----UAAAU GU-GUUUCAU CGUC|UA--C U|U|AUUGC| 9121 u--------- -----(--aa aaa)------ -------a|U UGAU(UGUUC )AUCAA-aaa 9181 u---GCAAU- --UCGUUAGU UGGGUUAAAA UC|GU-U(GU AA)AGCAGAU UUGUUUAUAU 9241 AU|UUAAU-U AG|U|<---- ---------- ---------- ------uaau uuaauuaagu 9301 >--------- ---------- ----UUU-AA UAg-(UAGU- AC(-GCAA)G GAUU-)UAUU 9361 A--U~-<~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~>~ ~~~~~~~~~~ ~~~~~~~~~~ 9421 ~|~~~~~~~~ (~~~~~)<~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~> 9541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9601 ~~~~~~~~~~ ~~~~~~~~~~ (~~~~~~~~~ ~~~~~)~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9661 ~~~~~~~~~~ ~~~~~~~<~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~>~~| ~~~~~~(~~~ )~~~~~~~~~ ~~~~~~~|~~ 9961 ~~~(~~~~~~ ~~~)~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10021 ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~~~ 10141 ~~~~~~~~~~ ~~~~~~~~~~ ~)~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10201 ~~~~~~~~~~ ~|~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10321 ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ||||| // LOCUS mt.H.maria 10775 bp RNA RNA 11-JUN-1994 DEFINITION Kinetoplast Herpetomonas mariadeanei.; . ACCESSION U01009 KEYWORDS . SOURCE Kinetoplast Herpetomonas mariadeanei. ORGANISM Kinetoplast Herpetomonas mariadeanei. REFERENCE 1 (bases 1 to 1024) AUTHORS Landweber,L.F. and Gilbert,W. TITLE phenomenon Phylogenetic analysis of RNA editing: a primitive genetic JOURNAL Proc. Natl. Acad. Sci. U.S.A. 91, 918-921 (1994) STANDARD No information REFERENCE 2 (bases 1 to 1024) AUTHORS Landweber,L. TITLE Direct Submission JOURNAL Submitted (23-AUG-1993) Laura Landweber, Cellular and Developmental Biology, Harvard University, Biological Laboratories, 16 Divinity Ave., Cambridge, Massachusetts 02138, USA STANDARD No information COMMENTS Sequence information (bases 1 to 10775) Corresponding GenBank entry: U01009 BASE COUNT 455 a 85 c 94 g 385 t 9756 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~u guuguuuuau auuuaguuua auauauuuuu aaaauauuaa cacaugauau 181 annnnnaagu ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 |--------| ---------- -|-------- ---------- ---------| -----(---- 361 ---------) -|-------- -------|-- -------(-- ---------- ---------- 421 -------)-- ---------- ---------- ---------- ---------- -----(---- 481 )---|----- --(-----)- ---------- ---------- ---------- -(------)- 541 ---------- ---------- ---<------ ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- ---------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 ---------- ---------- ---------- ---------- ---------- ---------- 781 ---------- ---------- ---------- -------->- ---------- |--------- 841 ---(----)- ---------- ---------- ---------- ---------- ---------- 901 ------(--- --)------- |--------- -------(-- ----)----- ---------- 961 -------<-- ---------- ---------- ---------- ---------- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- --->------ 1201 ---------- ---------- ---------- ---------< ---------- ---------- 1261 ---------- ---------- ---------> (------)-- ---------- ---|-(---) 1321 -------(-- -----)---- ---------- ---------- ---------- --<------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- >--------- ------(--- ---------- 1561 -------)-- ---------- ---------- -(-------) ---------- ---------- 1621 ---------- ---------- ---------- ---------( ------)--- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- -(-------) ---------- ---------- ---------- ---------- 1801 ---------- ---------- --<------- ---------- ---------- ---------- 1861 ----->---- ---------- --------<- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------> (--------- 2041 --)------- ---------- ------(--- -----)---- |--------- ---------- 2101 ---------- ---------- -------(-- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- -)-------- ---------- 2521 ----(----- )-----<--- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ----->---- --(------) ---------- ---------- ---------- 2701 ------aucu aa-aauuu-c u--ugAACUG UUA-UUU-AU AGU------- ---------- 2761 -(-------- ---------- ---------- ---------- ----uuuau) ---------- 2821 --AUUU-U-U UA-UUUAAU( GUUUAAA-U) AUUUaAUUAu ugAUGcuau- cACAGUU-gu 2881 uu(u-auau) guc-ccua-a c-aaaaauag uaa-gagccu u--------- ---------- 2941 ---------- ---------- ------ ---------- 3061 --------|- ---------- ---------- ---------- ---------< ---------- 3121 ---------- ---------- ---------- ---------- ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---->----- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- -<-------- ---------- ---------a 3721 auuaauaaau aauuauu--- caaauaauau uaugaauauu au>gaaaa-u uau(aaaaa- 3781 -u-u)-aua- -auau|a(u- aa)u|ccaau a---auaugu -au--uacua aaa------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- -------|-- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- ---------- 4021 ---------- ---------- ---------- ---------- ---------- ---------- 4081 ---------- ---------| ---------- ---------- ---------- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- ---------- ---------- ---------- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- ---------- ---------| ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- --)------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ---------- ---------- 5221 ---------- ---------- ---------- ---------- ---------- ---------- 5281 ---------- ---------- ---------- ---------- ---------- ---------- 5341 ---------- ---------- ---------- ---------- ---------- ---------- 5401 ---------- ---------- ---------- ---------- ---------- ---------- 5461 ---------- ---------- ---|------ ---------- ---------- ---------- 5521 |--------- ---------- ---------- ---------- ---------- ---------- 5581 ---------- ---------- ---------- ---------- ---------- ---------- 5641 ---------- ---------- ---------- ---------- ---------- ----ua-uau 5701 ----uu---- aauugaauau uaaaaguacc aauuuaauuu g-aaauuuau aacaaauaua 5761 cguuuuaauu auggaauuaa aauaaaaa-- ----gaauaa -a-aa-uauu uuaauauuua 5821 auauuuguua accaaaaagu aac-cauaaa gaa---uaau aaguauua-- -uuauuaaaa 5881 auauaauua- ---------- ---------- ---------- ---------- ---------- 5941 ---------- ---------- ---------- ---------- ---------- ---------- 6001 ---------- ---------- ---------- ---------- ---------- ---------- 6061 ---------- ---------- ---------- ---------- ---------- ---------- 6121 ---------- ---------- ---------- ---------- ---------- ---------- 6181 ---------- ---------- ---------- ---------- ---------- ---------- 6241 ---------- ---------- ---------- ---------- ---------- ---------- 6301 ---------- ---------- ---------- ---------- ---------- ---------- 6361 ---------- ---------- ---------- ---------- ---------- ---------- 6421 ---------- ---------- ------>--- ---------- ---------- ---------- 6481 ---------- ---------- ---------- ---------- ---------- ---------- 6541 ------uaaa aauacaaaaa -uauu-guu- ---------- ---------- ---------- 6601 ---------- ---------- ---------- ---------- ----<----- ---------- 6661 ---------- ---------- ---------- ---------- ---------- ---------- 6721 ---------- ---------- ---------- aauaaaauua uca>------ ---------- 6781 ------(--- )--------- -AAUUUCA|A AA---GCA-U UU(AUUAA)A UG-UGCC-UG 6841 UCUAAG|--- ---------- ---------- (-uaaaaua- ------)--- ---------- 6901 ---------- UUUAAGAUA- aUUCUU- --------|- ---------- ---------- 7021 ---------- --(------- ---------- ---------- ---------- ---------- 7081 ---------- ---------- ---------- ---)------ ---------- ---------| 7141 ---------- --|----|-- -------(-- -----)---- --|U(AUC)A AG-UAGCAUA 7201 GUA-AU-U-U |GUUAAC(-U AAUU-)AUUA AA|GU-guuc ca-uAGAA-A A-UUUUAAAA 7261 UU-------- ---------- -------Aa- -aacaaacaa cgua-ac-ua au--aaauua 7321 aa|a|uaaag au-uu(u--a aua-a)aaac caA----AAA AUUAAAAUAG GGCAAG--CC 7381 UAC-UC-|-U CCUUU--ACA AA|--G-AGA ACA--U---| <--------- ---------- 7441 ---------- ---------- --->------ ---------- ---------- ---------- 7501 ---------- ---------- ---------- --<-aaau-a u--------- ---------- 7561 ---------- ---------- ---------- ---------- ---------- ---------- 7621 ---------- ---------- ---------> --(------- -)-------- ---------- 7681 ---------- -------|-- ---------- ---------- ---------- ---------- 7741 -----(---- ----)----- ---------- ---------- ---------- --------<- 7801 ---------- ---------- ---------- ---------- ---------- ---------- 7861 ---------- ---------- ---------- ---------- ---------- ---------- 7921 ---------- ---------- ---------- ---------- ---------- ---------- 7981 ---------- ---------- ---------- ---------- ---------- ---------- 8041 ---------- ---------- ---------- ---------- ---------- ---------- 8101 ---------- ---------- ----->---- ---AU-G-UA -AUU-GU-AU GUUUGAUUG( 8161 GGG)CA-AUA C|UAUAUC(- --------UA AAUAUAUAG- )AAAA-AG|a |-|-----|< 8221 gcuauaauua uugaa----- ---------- ---------- ---------- ---------- 8281 ---------- ---------- ---------- ---------- ---------- ---------- 8341 ---------- ---------- ---------- ---------- ---------- ->-------- 8401 ---|------ ------<--- ---------- ---------- ---------- ---------- 8461 ---------- ---------- ---------- ---------- ---------- ---------- 8521 ---------- ---------- ---------- ---------- ---------- ---------- 8581 ---------- ---------- ---------- ---------- ---------- ---------- 8641 ---------- ---------> (--------- )--------- ---------- ---------- 8701 ---------- ---------- ---------- -------|-- (-|-----)- ---------- 8761 ---------- ---------( ---------- )--------- ---------- ---------- 8821 ---------- ---------- ---------- ---(------ -)-------- ---------- 8881 -|-------- ---------- ---------- ---------- ---(------ ---------- 8941 ---------- ---------- ---------- ---------- ---------- --)--|---- 9001 --------a- |uAAUAAAAG GUUCGA|GCA G|GUUAACAA |G-CAU-U-A ---------- 9061 --(A--AAC- )--------- -----UAAAU GU-GUUUCAU CGUC|UA--C U|U|AUUAC| 9121 u--------- -----(-aau aaa)------ -------a|U UGAU(UGUUC )AUCAA-aau 9181 u---GUAAU- --UCGUUAGU UGGGUUAAAA UC|GU-U(GU AA)AGCAGAU UUGUUUAUAU 9241 AU|UUAAU-U AU|A|<---- ---------- ---------- ------aaau aauauuaaaa 9301 >--------- ---------- ----UCA-AA -Au-(UAGU- AC(-GCAA)G GAUC-)U-uu 9361 a--u~-<~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~>~ ~~~~~~~~~~ ~~~~~~~~~~ 9421 ~|~~~~~~~~ (~~~~~)<~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~> 9541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9601 ~~~~~~~~~~ ~~~~~~~~~~ (~~~~~~~~~ ~~~~~)~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9661 ~~~~~~~~~~ ~~~~~~~<~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~>~~| ~~~~~~(~~~ )~~~~~~~~~ ~~~~~~~|~~ 9961 ~~~(~~~~~~ ~~~)~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10021 ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~~~ 10141 ~~~~~~~~~~ ~~~~~~~~~~ ~)~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10201 ~~~~~~~~~~ ~|~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10321 ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ||||| // LOCUS mt.H.musca 10775 bp RNA RNA 29-JUN-1994 DEFINITION Kinetoplast Herpetomonas muscarum.; . ACCESSION U01011 KEYWORDS . SOURCE Kinetoplast Herpetomonas muscarum. ORGANISM Kinetoplast Herpetomonas muscarum. REFERENCE 1 (bases 1 to 1004) AUTHORS Landweber,L.F. and Gilbert,W. TITLE Phylogenetic analysis of RNA editing: a primitive genetic phenomenon JOURNAL Proc. Natl. Acad. Sci. U.S.A. 91, 918-921 (1994) STANDARD No information REFERENCE 2 (bases 1 to 1004) AUTHORS Landweber,L. TITLE Direct Submission JOURNAL Submitted (23-AUG-1993) Laura Landweber, Cellular and Developmental Biology, Harvard University, Biological Laboratories, 16 Divinity Ave., Cambridge, MA 02138, USA STANDARD No information COMMENTS Sequence information (bases 1 to 10775) Corresponding GenBank entry: U01011 BASE COUNT 441 a 75 c 103 g 380 t 9776 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ uguuguuuua uauuuaguuu unnnuuuaua annaacaaaa 181 uuuaaaauaa ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 |--------| ---------- -|-------- ---------- ---------| -----(---- 361 ---------) -|-------- -------|-- -------(-- ---------- ---------- 421 -------)-- ---------- ---------- ---------- ---------- -----(---- 481 )---|----- --(-----)- ---------- ---------- ---------- -(------)- 541 ---------- ---------- ---<------ ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- ---------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 ---------- ---------- ---------- ---------- ---------- ---------- 781 ---------- ---------- ---------- -------->- ---------- |--------- 841 ---(----)- ---------- ---------- ---------- ---------- ---------- 901 ------(--- --)------- |--------- -------(-- ----)----- ---------- 961 -------<-- ---------- ---------- ---------- ---------- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- --->------ 1201 ---------- ---------- ---------- ---------< ---------- ---------- 1261 ---------- ---------- ---------> (------)-- ---------- ---|-(---) 1321 -------(-- -----)---- ---------- ---------- ---------- --<------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- >--------- ------(--- ---------- 1561 -------)-- ---------- ---------- -(-------) ---------- ---------- 1621 ---------- ---------- ---------- ---------( ------)--- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- -(-------) ---------- ---------- ---------- ---------- 1801 ---------- ---------- --<------- ---------- ---------- ---------- 1861 ----->---- ---------- --------<- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------> (--------- 2041 --)------- ---------- ------(--- -----)---- |--------- ---------- 2101 ---------- ---------- -------(-- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- -)-------- ---------- 2521 ----(----- )-----<--- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ----->---- --(------) ---------- ---------- ---------- 2701 -----aauuu aa-aguuu-c u--ugAACUG UUA-UAU-AU AGU------- ---------- 2761 -(-------- ---------- ---------- ---------- ----uuaua) ---------- 2821 --UUUU-A-U AG-UUUAAU( GUUUAAA-U) AUUUaAUUA- --AUGAUGAG GACAGUU-Gu 2881 uc(u-auau) gua-ccaa-a g-aaaaauag uaaaauaau- g--------- ---------- 2941 ---------- ---------- ------ ---------- 3061 --------|- ---------- ---------- ---------- ---------- ---------- 3121 ---------- ---------- ---------- ---------- ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------a 3721 auuaauaaau aauuauuuau a-uaa---aa aauaaauauu au>gaaaa-a uau(aaaaa- 3781 -u-u)-aua- --uuu|u(g- ua)a|gccaa u---aauaau ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- ---------- 4021 ---------- ---------- ---------- ---------- ---------- ---------- 4081 ---------- ---------- ---------- ---------- ---------- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- ---------- ---------- ---------- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- ---------- ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- --)------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ---------- ---------- 5221 ---------- ---------- ---------- ---------- ---------- ---------- 5281 ---------- ---------- ---------- ---------- ---------- ---------- 5341 ---------- ---------- ---------- ---------- ---------- ---------- 5401 ---------- ---------- ---------- ---------- ---------- ---------- 5461 ---------- ---------- ---------- ---------- ---------- ---------- 5521 ---------- ---------- ---------- ---------- ---------- ---------- 5581 ---------- ---------- ---------- ---------- ---------- ---------- 5641 ---------- ---------- ---------- ---------- ---------- ------aaau 5701 aaaaauaaac aauuuuaauu gaauauuaaa auuacaaauu uaauuuguac uuaguaaaau 5761 auauuaaaau acugguauau auauauag-- ----c-auaa u----g---u uuaauauuua 5821 auauuuguua aauaaaaagu aac-caaaau aaa---uuaa aagaauuauu guuauauaua 5881 u--------- ---------- ---------- ---------- ---------- ---------- 5941 ---------- ---------- ---------- ---------- ---------- ---------- 6001 ---------- ---------- ---------- ---------- ---------- ---------- 6061 ---------- ---------- ---------- ---------- ---------- ---------- 6121 ---------- ---------- ---------- ---------- ---------- ---------- 6181 ---------- ---------- ---------- ---------- ---------- ---------- 6241 ---------- ---------- ---------- ---------- ---------- ---------- 6301 ---------- ---------- ---------- ---------- ---------- ---------- 6361 ---------- ---------- ---------- ---------- ---------- ---------- 6421 ---------- ---------- ------>--- ---------- ---------- ---------- 6481 ---------- ---------- ---------- ---------- ---------- ---------- 6541 -auuuuuaaa aauacaaaua -uguu-guu- ---------- ---------- ---------- 6601 ---------- ---------- ---------- ---------- ----<----- ---------- 6661 ---------- ---------- ---------- ---------- ---------- ---------- 6721 ---------- ---------- ---------- aauaaaauua uca>------ ---------- 6781 ------(--- )--------- -AAUUUUA|A AU---GCG-U UU(AUUAA)A UG-CGCU-CG 6841 UCUAAG|--- ---------- ---------- (-aauaaua- ------)--- ---------- 6901 ---------- UUUAAGACU- aUUCUG- --------|- ---------- ---------- 7021 ---------- --(------- ---------- ---------- ---------- ---------- 7081 ---------- ---------- ---------- ---)------ ---------- ---------| 7141 ---------- --|----|-- -------(-- -----)---- --|U(AUU)- AG-UAGCAUA 7201 GUA-AU-U-U |GUUAAC(-U AAUU-)AUUA AA|GU-guuc ca-uAGAA-A A-UUUUAAAA 7261 UU-------- ---------- -------Aa- -aacaaacaa agua-au-ua au--aaauua 7321 aa|a|uaaag au-uu(u--a aua-a)aaau caA----AAA AUUAAAAUAG GGCAAG-UCC 7381 UAC-UC-|-U CCUUU--ACA AA|--G-AGA ACA--U---| <--------- ---------- 7441 ---------- ---------- --->------ ---------- ---------- ---------- 7501 ---------- ---------- ---------- --<-uaa--a u--------- ---------- 7561 ---------- ---------- ---------- ---------- ---------- ---------- 7621 ---------- ---------- ---------> --(------- -)-------- ---------- 7681 ---------- -------|-- ---------- ---------- ---------- ---------- 7741 -----(---- ----)----- ---------- ---------- ---------- --------<- 7801 ---------- ---------- ---------- ---------- ---------- ---------- 7861 ---------- ---------- ---------- ---------- ---------- ---------- 7921 ---------- ---------- ---------- ---------- ---------- ---------- 7981 ---------- ---------- ---------- ---------- ---------- ---------- 8041 ---------- ---------- ---------- ---------- ---------- ---------- 8101 ---------- ---------- ----->---- ---AU-G-UA -AUU-GU-AU GUUUGAUUG( 8161 GGG)CA-AUA C|UAUAUC(- --------UA GUUAUAUAG- )CAAA-AG|a |-|-----|< 8221 acuauaauua uugaa----- ---------- ---------- ---------- ---------- 8281 ---------- ---------- ---------- ---------- ---------- ---------- 8341 ---------- ---------- ---------- ---------- ---------- ->-------- 8401 ---|------ ------<--- ---------- ---------- ---------- ---------- 8461 ---------- ---------- ---------- ---------- ---------- ---------- 8521 ---------- ---------- ---------- ---------- ---------- ---------- 8581 ---------- ---------- ---------- ---------- ---------- ---------- 8641 ---------- ---------> (--------- )--------- ---------- ---------- 8701 ---------- ---------- ---------- -------|-- (-|-----)- ---------- 8761 ---------- ---------( ---------- )--------- ---------- ---------- 8821 ---------- ---------- ---------- ---(------ -)-------- ---------- 8881 -|-------- ---------- ---------- ---------- ---(------ ---------- 8941 ---------- ---------- ---------- ---------- ---------- --)--|---- 9001 --------a- |uAAUAAAAG GUUCGA|GCA G|GUUAACAA |G-CAU-U-A ---------- 9061 --(A--AAC- )--------- -----UAAAU GU-GUUUCAU CGUC|UA--C U|U|AUUGC| 9121 u--------- -----(-aa- -aa)------ -------a|U UGAU(UGUUC )AUCAA-aau 9181 u---GCAAU- --UCGUUAGU UGGGUU-AAA UC|GU-U(GU AA)AGCAGAU UUGUUUAUAU 9241 AU|UUAAG-U UU|-|<---- ---------- ---------- ----auauaa aaguuucaga 9301 >--------- ---------- ------u-aa acaa(CAGU- AC(-GCAA)G GAUgc)auuu 9361 a--u~-<~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~>~ ~~~~~~~~~~ ~~~~~~~~~~ 9421 ~|~~~~~~~~ (~~~~~)<~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~> 9541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9601 ~~~~~~~~~~ ~~~~~~~~~~ (~~~~~~~~~ ~~~~~)~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9661 ~~~~~~~~~~ ~~~~~~~<~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~>~~| ~~~~~~(~~~ )~~~~~~~~~ ~~~~~~~|~~ 9961 ~~~(~~~~~~ ~~~)~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10021 ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~~~ 10141 ~~~~~~~~~~ ~~~~~~~~~~ ~)~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10201 ~~~~~~~~~~ ~|~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10321 ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ||||| // LOCUS mt.H.samue 10775 bp RNA RNA 11-JUN-1994 DEFINITION Kinetoplast Herpetomonas samuelpessoai.; . ACCESSION U01012 KEYWORDS . SOURCE Kinetoplast Herpetomonas samuelpessoai. ORGANISM Kinetoplast Herpetomonas samuelpessoai. REFERENCE 1 (bases 1 to 1011) AUTHORS Landweber,L.F. and Gilbert,W. TITLE Phylogenetic analysis of RNA editing: a primitive genetic phenomenon JOURNAL Proc. Natl. Acad. Sci. U.S.A. 91, 918-921 (1994) STANDARD No information REFERENCE 2 (bases 1 to 1011) AUTHORS Landweber,L. TITLE Direct Submission JOURNAL Submitted (23-AUG-1993) Laura Landweber, Cellular and Developmental Biology, Harvard University, Biological Laboratories, 16 Divinity Ave., Cambridge, MA 02138, USA STANDARD No information COMMENTS Sequence information (bases 1 to 10775) Corresponding GenBank entry: U01012 BASE COUNT 438 a 73 c 101 g 396 t 9767 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ uguuguuuua uauuuaguuu aannnuuauu aaauuaggcc 181 aauuaauaau aauu------ ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 |--------| ---------- -|-------- ---------- ---------| -----(---- 361 ---------) -|-------- -------|-- -------(-- ---------- ---------- 421 -------)-- ---------- ---------- ---------- ---------- -----(---- 481 )---|----- --(-----)- ---------- ---------- ---------- -(------)- 541 ---------- ---------- ---<------ ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- ---------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 ---------- ---------- ---------- ---------- ---------- ---------- 781 ---------- ---------- ---------- -------->- ---------- |--------- 841 ---(----)- ---------- ---------- ---------- ---------- ---------- 901 ------(--- --)------- |--------- -------(-- ----)----- ---------- 961 -------<-- ---------- ---------- ---------- ---------- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- --->------ 1201 ---------- ---------- ---------- ---------< ---------- ---------- 1261 ---------- ---------- ---------> (------)-- ---------- ---|-(---) 1321 -------(-- -----)---- ---------- ---------- ---------- --<------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- >--------- ------(--- ---------- 1561 -------)-- ---------- ---------- -(-------) ---------- ---------- 1621 ---------- ---------- ---------- ---------( ------)--- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- -(-------) ---------- ---------- ---------- ---------- 1801 ---------- ---------- --<------- ---------- ---------- ---------- 1861 ----->---- ---------- --------<- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------> (--------- 2041 --)------- ---------- ------(--- -----)---- |--------- ---------- 2101 ---------- ---------- -------(-- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- -)-------- ---------- 2521 ----(----- )-----<--- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ----->---- --(------) ---------- ---------- ---------- 2701 -------uuu aa-aguuu-c u--ugAACUG UUA-UAU-AU AGU------- ---------- 2761 -(-------- ---------- ---------- ---------- ----uuuuu) ---------- 2821 --AUUA-A-U AG-UUUAAU( GUUUAAA-U) AUUUaACUA- --AUGAUGAA AACAGUU-gu 2881 uc(u-auau) gua-ccaa-a g-aaauauag uaaaauaau- g--------- ---------- 2941 ---------- ---------- ------ ---------- 3061 --------|- ---------- ---------- ---------- ---------- ---------- 3121 ---------- ---------- ---------- ---------- ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------a 3721 uuuaauaaau aauuauu-ca a-auca-uaa aaugaauauu au>gaaaa-a uau(aaaaa- 3781 -u-u)-auau -guuu|u(aa ac)c|aauag u--auaaaua -aa--auaaa a--------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- -------|-- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- ---------- 4021 ---------- ---------- ---------- ---------- ---------- ---------- 4081 ---------- ---------| ---------- ---------- ---------- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- ---------- ---------- ---------- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- ---------- ---------| ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- --)------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ---------- ---------- 5221 ---------- ---------- ---------- ---------- ---------- ---------- 5281 ---------- ---------- ---------- ---------- ---------- ---------- 5341 ---------- ---------- ---------- ---------- ---------- ---------- 5401 ---------- ---------- ---------- ---------- ---------- ---------- 5461 ---------- ---------- ---|------ ---------- ---------- ---------- 5521 |--------- ---------- ---------- ---------- ---------- ---------- 5581 ---------- ---------- ---------- ---------- ---------- ---------- 5641 ---------- ---------- ---------- ---------- ---------- ----ua-u-- 5701 --uuuu---- aauugaauau uaaaaauaca aauuu---ua ---auu-ugu ac-u-uagua 5761 a-aaaaauaa uaaguuuggu aguaaaauaa aucaaaauaa ----auuauu uuaauauuua 5821 auauuuguua aauaaaaagu aac-uaaaua aau---uuau aagaauuauu auugcuaaua 5881 uauuuuuaaa aauauc---- ---------- ---------- ---------- ---------- 5941 ---------- ---------- ---------- ---------- ---------- ---------- 6001 ---------- ---------- ---------- ---------- ---------- ---------- 6061 ---------- ---------- ---------- ---------- ---------- ---------- 6121 ---------- ---------- ---------- ---------- ---------- ---------- 6181 ---------- ---------- ---------- ---------- ---------- ---------- 6241 ---------- ---------- ---------- ---------- ---------- ---------- 6301 ---------- ---------- ---------- ---------- ---------- ---------- 6361 ---------- ---------- ---------- ---------- ---------- ---------- 6421 ---------- ---------- ------>--- ---------- ---------- ---------- 6481 ---------- ---------- ---------- ---------- ---------- ---------- 6541 ---------- -----aaaua -uguu-guu- ---------- ---------- ---------- 6601 ---------- ---------- ---------- ---------- ----<----- ---------- 6661 ---------- ---------- ---------- ---------- ---------- ---------- 6721 ---------- ---------- ---------- aauaaaauua uca>------ ---------- 6781 ------(--- )--------- -AAUUUUA|A AU---GCG-U UU(AUUAA)A UG-CGCU-CG 6841 UCUAAG|--- ---------- ---------- (-aauuuua- ------)--- ---------- 6901 ---------- UUUAAGAUU- aUUCUG- --------|- ---------- ---------- 7021 ---------- --(------- ---------- ---------- ---------- ---------- 7081 ---------- ---------- ---------- ---)------ ---------- ---------| 7141 ---------- --|----|-- -------(-- -----)---- --|U(AUU)- AG-UAGCAUA 7201 GUA-AU-U-U |GUUAAC(-U AAUU-)AUUA AA|GU-guuc ca-uAGAA-A A-UUUUAAAA 7261 UU-------- ---------- -------Aa- -aacaaacaa agua-au-ua au--aaauua 7321 aa|a|uaaag au-uu(u--a aua-a)aaau caA----AAA AUUAAAAUAG GGCAAG-UCC 7381 UAC-UC-|-U CCUUU--ACA AA|--G-AGA ACA--U---| <--------- ---------- 7441 ---------- ---------- --->------ ---------- ---------- ---------- 7501 ---------- ---------- ---------- --<-uuu--a u--------- ---------- 7561 ---------- ---------- ---------- ---------- ---------- ---------- 7621 ---------- ---------- ---------> --(------- -)-------- ---------- 7681 ---------- -------|-- ---------- ---------- ---------- ---------- 7741 -----(---- ----)----- ---------- ---------- ---------- --------<- 7801 ---------- ---------- ---------- ---------- ---------- ---------- 7861 ---------- ---------- ---------- ---------- ---------- ---------- 7921 ---------- ---------- ---------- ---------- ---------- ---------- 7981 ---------- ---------- ---------- ---------- ---------- ---------- 8041 ---------- ---------- ---------- ---------- ---------- ---------- 8101 ---------- ---------- ----->---- ---AU-G-UA -AUU-GU-AU GUUUGAUUG( 8161 GGG)CA-AUA C|UAUAUC(- --------UU GUUAUAUAG- )AAAA-AG|a |-|-----|< 8221 acuauaauca uugaa----- ---------- ---------- ---------- ---------- 8281 ---------- ---------- ---------- ---------- ---------- ---------- 8341 ---------- ---------- ---------- ---------- ---------- ->-------- 8401 ---|------ ------<--- ---------- ---------- ---------- ---------- 8461 ---------- ---------- ---------- ---------- ---------- ---------- 8521 ---------- ---------- ---------- ---------- ---------- ---------- 8581 ---------- ---------- ---------- ---------- ---------- ---------- 8641 ---------- ---------> (--------- )--------- ---------- ---------- 8701 ---------- ---------- ---------- -------|-- (-|-----)- ---------- 8761 ---------- ---------( ---------- )--------- ---------- ---------- 8821 ---------- ---------- ---------- ---(------ -)-------- ---------- 8881 -|-------- ---------- ---------- ---------- ---(------ ---------- 8941 ---------- ---------- ---------- ---------- ---------- --)--|---- 9001 --------a- |uAAUAAAAG GUUCGA|GCA G|GUUAACAA |G-CAU-U-A ---------- 9061 --(A--AAC- )--------- -----UAAAU GU-GUUUCAU CGUC|UA--C U|U|AUUGC| 9121 u--------- -----(-aa- -aa)------ -------a|U UGAU(UGUUC )AUCAA-aau 9181 u---GCAAU- --UCGUUAGU UGGGUUAAAA UC|GU-U(GU AA)AGCAGAU UUGUUUAUAU 9241 AU|UUAAU-U UA|U|<---- ---------- ---------- ------auau auauuuaaa- 9301 >--------- ---------- -----uu-aa aca-(UAGU- AC(-GCA-)G GAUC-)auuu 9361 a--u~-<~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~>~ ~~~~~~~~~~ ~~~~~~~~~~ 9421 ~|~~~~~~~~ (~~~~~)<~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~> 9541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9601 ~~~~~~~~~~ ~~~~~~~~~~ (~~~~~~~~~ ~~~~~)~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9661 ~~~~~~~~~~ ~~~~~~~<~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~>~~| ~~~~~~(~~~ )~~~~~~~~~ ~~~~~~~|~~ 9961 ~~~(~~~~~~ ~~~)~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10021 ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~~~ 10141 ~~~~~~~~~~ ~~~~~~~~~~ ~)~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10201 ~~~~~~~~~~ ~|~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10321 ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ||||| // LOCUS mt.L.taren 10775 bp RNA RNA ~?~???? DEFINITION Kinetoplast Leishmania tarentolae.; 12S ribosomal RNA; 9S ribosomal RNA; ribosomal RNA. ACCESSION X02354 KEYWORDS 12S ribosomal RNA; 9S ribosomal RNA; ribosomal RNA. SOURCE Kinetoplast Leishmania tarentolae. ORGANISM Kinetoplast Leishmania tarentolae. REFERENCE 1 (bases 1 to 1665) AUTHORS de la Cruz,V.F., Simpson,A.M., Lake,J.A. and Simpson,L. TITLE kinetoplast (mitochondrial) ribosomal RNA from Leishmania tarentolae: conservation of peptidyl-transferase structural elements Primary sequence and partial secondary structure of the 12S JOURNAL Nucleic Acids Res. 13 (7), 2337-2356 (1985) STANDARD No information COMMENTS Organism information Culture collection: ? Sequence information (bases 1 to 10775) Corresponding GenBank entry: X02354 Phylo:Mitochondria,Kinetoplast,Leishmania BASE COUNT 491 a 71 c 105 g 506 t 9602 others ORIGIN 1 |~~~~~~~~~ uauuaaucaa auuuaauuaa uaaguaauau ugauuuuauu uaauuuuaag 61 uguuuaauua uauuuuugaa uuaaaauuuu auuauuuggu auuuaauauu uaaaaauauu 121 auauauuuua guuuuaaauu uguuguuuua uauuuaguuu aauauuuaua uauuaguaaa 181 uaauauagau uu-------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 |--------| ---------- -|-------- ---------- ---------| -----(---- 361 ---------) -|-------- -------|-- -------(-- ---------- ---------- 421 -------)-- ---------- ---------- ---------- ---------- -----(---- 481 )---|----- --(-----)- ---------- ---------- ---------- -(------)- 541 ---------- ---------- ---<------ ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- ---------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 ---------- ---------- ---------- ---------- ---------- ---------- 781 ---------- ---------- ---------- -------->- ---------- |--------- 841 ---(----)- ---------- ---------- ---------- ---------- ---------- 901 ------(--- --)------- |--------- -------(-- ----)----- ---------- 961 -------<-- ---------- ---------- ---------- ---------- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- --->------ 1201 ---------- ---------- ---------- ---------< ---------- ---------- 1261 ---------- ---------- ---------> (------)-- ---------- ---|-(---) 1321 -------(-- -----)---- ---------- ---------- ---------- --<------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- >--------- ------(--- ---------- 1561 -------)-- ---------- ---------- -(-------) ---------- ---------- 1621 ---------- ---------- ---------- ---------( ------)--- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- -(-------) ---------- ---------- ---------- ---------- 1801 ---------- ---------- --<------- ---------- ---------- ---------- 1861 ----->---- ---------- --------<- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------> (--------- 2041 --)------- ---------- ------(--- -----)---- |--------- ---------- 2101 ---------- ---------- -------(-- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- -)-------- ---------- 2521 ----(----- )-----<--- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ----->---- --(------) ---------- ---------- ---------- 2701 -----aauuu aa-aauuu-u ua-ugAACUG UUA-UUU-AU AGU------- ---------- 2761 -(-------- ---------- ---------- ---------- ----uuaau) ---------- 2821 --AUUU-U-U AG-UUUAAU( GUUUAAA-U) AUUUaACUA- --AUGAAGG- CACAGUU-Gu 2881 uc(u-auau) gua-ccua-u a-aaaaauag uaaaauuauu u--------- ---------- 2941 ---------- ---------- ------ ---------- 3061 --------|- ---------- ---------- ---------- ---------< ---------- 3121 ---------- ---------- ---------- ---------- ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---->----- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- -<-------- ---------- ---------a 3721 auuaauaaau aauuauuaac u-uaacuuaa aauuaauauu au>ggaaa-a uuu(aaaaa- 3781 -u-u)-aaau -uauu|u(u- uc)-|uaaua c(--aauuca )ua|-uaa-- ------<--- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ->-------- -------|-- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- ---------- 4021 ---------- ---------- ---------- ---------- ---------- ---------- 4081 -------|-- ---------| -------|-- ---------- ---------- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- ---------- ---------- ---------- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- --------(- 4441 ------)--- ---------- ---------- --------|- ---------- ---------- 4501 ---------- ---------- (-------)< ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ------->-- ---------- -|-------| ---------- ---------- 4681 --|------- ---------- ---------- (--------- ---------- ---------- 4741 ---------- -----)---- ------|--- ---------- ---------- -|-------- 4801 ---------- ---------- ----(----- --)---|--- ---------- ---------- 4861 ---------- ---------- ---------- -------(-- ---------- ------)<-- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 >--------- ---------- ---------- ----(----- ---------- ---------- 5041 ---------- ---------- ----)----- |-----|--- ---------- |--------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ---------- ---------- 5221 ---------- ---------- ---------- ---------- ---------- ---------- 5281 ---------- ---------- ---------- ---------- ---------- ---------- 5341 ---------- ---------- ---------- ---------- ---------- ---------- 5401 ---------- ---------- ---------- ---------- ---------- ---------- 5461 -----(---- ------)--- ---|------ --------|- ---------- -(-----)-- 5521 |--------- ---------- ---------- ---------- ---------- ---------- 5581 --<------- ---------- ---------- ---------- ---------- ---------- 5641 ---------- ---------- ------->-- ---------- ---------- ------ ---------- ---------- ---------- 6481 ---------- ---------- ---------- ---------- ---------- ---------- 6541 -uuuuuuaaa aauauaaaaa -uauu-guu- ---------- ---------- ---------- 6601 ---------- ---------- ---------- ---------- ----<----- ---------- 6661 ---------- ---------- ---------- ---------- ---------- ---------- 6721 ---------- ---------- ---------- aauaaaauua uca>------ ---------- 6781 ------(--- )--------- -AGUUUUA|A AA---GCG-U UU(AUUAA)A UG-CGUC-GG 6841 UCUAAG|--- ---------- ---------- (-auuuaua- ------)--- ---------- 6901 ---------- UUUAAGAUU- aUUCUU- --------|- ---------- ---------- 7021 ---------- --(------- ---------- ---------- ---------- ---------- 7081 ---------- ---------- ---------- ---)------ ---------- ---------| 7141 ---------- --|----|-- -------(-- -----)---- --|U(AUU)- AG-UAGCAUA 7201 GUA-AU-U-U |AUUAAC(-U AAUU-)AUUA AA|GU-guuc ca-uAGAA-A A-UUUUAAAA 7261 UU-------- ---------- -------Au- -aacaaucua aaua-aa-ua au--aaauua 7321 aa|a|uaaag au-uu(u--a aaa-a)aaau uaA----AAA AUUAAAAUAG GGCAAG-UCC 7381 UAC-UC-|-U CCUUU--ACA AA|--G-AGA ACA--U---| <--------- ---------- 7441 ---------- ---------- --->------ ---------- ---------- ---------- 7501 ---------- ---------- ---------- --<-uuu--a u--------- ---------- 7561 ---------- ---------- ---------- ---------- ---------- ---------- 7621 ---------- ---------- ---------> --(------- -)-------- ---------- 7681 ---------- -------|-- ---------- ---------- ---------- ---------- 7741 -----(---- ----)----- ---------- ---------- ---------- --------<- 7801 ---------- ---------- ---------- ---------- ---------- ---------- 7861 ---------- ---------- ---------- ---------- ---------- ---------- 7921 ---------- ---------- ---------- ---------- ---------- ---------- 7981 ---------- ---------- ---------- ---------- ---------- ---------- 8041 ---------- ---------- ---------- ---------- ---------- ---------- 8101 ---------- ---------- ----->---- ---AU-G-UA -AUU-GU-AU GUUUGAUUG( 8161 GGG)CA-AUA C|UAUAUC(- --------UA GUUAUAUAG- )AAAA-AG|a |-|-----|< 8221 acuauaauca uugaa----- ---------- ---------- ---------- ---------- 8281 ---------- ---------- ---------- ---------- ---------- ---------- 8341 ---------- ---------- ---------- ---------- ---------- ->-------- 8401 ---|------ ------<--- ---------- ---------- ---------- ---------- 8461 ---------- ---------- ---------- ---------- ---------- ---------- 8521 ---------- ---------- ---------- ---------- ---------- ---------- 8581 ---------- ---------- ---------- ---------- ---------- ---------- 8641 ---------- ---------> (--------- )--------- ---------- ---------- 8701 ---------- ---------- ---------- -------|-- (-|-----)- ---------- 8761 ---------- ---------( ---------- )--------- ---------- ---------- 8821 ---------- ---------- ---------- ---(------ -)-------- ---------- 8881 -|-------- ---------- ---------- ---------- ---(------ ---------- 8941 ---------- ---------- ---------- ---------- ---------- --)--|---- 9001 --------a- |uAAUAAAAG GUUCGA|GCA G|GUUAACAA |G-CAU-U-A ---------- 9061 --(A--UAC- )--------- -----UAAAU GU-GUUUCAU CGUC|UA--C U|U|AUUGC| 9121 u--------- -----(-aau aaa)------ -------a|U UGAU(UGUUC )AUCAA-aaa 9181 u---GCAAU- --UCGUUAGU UGGGUUAAAA UC|GU-U(GU AA)AGCAGAU UUGUUUAUAU 9241 AU|UUAAU-U UA|U|<---- ---------- ---------- ------auau auauuuaaaa 9301 >--------- ---------- ----AUU-AA UAu-(UAGU- AC(-GCAA)G GAUC-)UAUU 9361 A--UU-~ ~~~~~~~~~~ ~~~~~~~~~~ 9421 ~|~~~~~~~~ (~~~~~)<~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~> 9541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9601 ~~~~~~~~~~ ~~~~~~~~~~ (~~~~~~~~~ ~~~~~)~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9661 ~~~~~~~~~~ ~~~~~~~<~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~>~~| ~~~~~~(~~~ )~~~~~~~~~ ~~~~~~~|~~ 9961 ~~~(~~~~~~ ~~~)~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10021 ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~~~ 10141 ~~~~~~~~~~ ~~~~~~~~~~ ~)~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10201 ~~~~~~~~~~ ~|~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10321 ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ||||| // LOCUS mt.Lept.sp 10775 bp RNA RNA 11-JAN-191 DEFINITION Kinetoplast Leptomonas sp.. ACCESSION No information KEYWORDS No information. SOURCE Kinetoplast Leptomonas sp. ORGANISM Kinetoplast Leptomonas sp. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 10775) Corresponding GenBank entry: J03814 LOCUS TRLKPRGXY 2568 bp ds-DNA ORG 15-SEP-1990 DEFINITION Leptomonas sp. 9S and 12S ribosomal RNA genes. ACCESSION J03814 KEYWORDS 12S ribosomal RNA; 9S ribosomal RNA; ribosomal RNA gene. SOURCE Leptomonas sp. kinetoplast DNA. ORGANISM Kinetoplast Leptomonas sp. Eukaryota; Animalia; Protozoa; Sarcomastigophora; Mastigophora; Kinetoplastida; Trypanosomatina; Trypanosomatidae. REFERENCE 1 (bases 1 to 2568) AUTHORS Lake,J.A., de la Cruz,V.F., Ferreira,P.C., Morel,C. and Simpson,L. TITLE Evolution of parasitism: Kinetoplastid protozoan history reconstructed from mitochondrial rRNA gene sequences JOURNAL Proc. Natl. Acad. Sci. U.S.A. 85, 4779-4783 (1988) STANDARD simple staff_review COMMENT Draft entry and computer_readable sequence for [Proc. Natl. Acad. Sci. U.S.A. 85, 4779-4783 (1988)] kindly provided by L.Simpson, 06-MAY-1988. FEATURES Location/Qualifiers rRNA 351..1500 /note="12S rRNA (put.)" rRNA 1651..2250 /note="9S rRNA (put.)" BASE COUNT 968 a 207 c 322 g 1071 t ORIGIN BamHI site. BASE COUNT 465 a 75 c 117 g 505 t 9613 others ORIGIN 1 |~~~~~~~~a uuuuguuuuu auuuaucaau auaguuaaua aaauaaucua gaauuuuaug 61 uuaaauauau aauuauauuu uugauuauua uauuuuguua uuuuauuuaa guuaauuaaa 121 uuguauuaua uuuaauuuuu aaauuuguug uuuuauauuu aguuuuaugu uuauaauuua 181 augcaauacu gcaca----- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 |--------| ---------- -|-------- ---------- ---------| -----(---- 361 ---------) -|-------- -------|-- -------(-- ---------- ---------- 421 -------)-- ---------- ---------- ---------- ---------- -----(---- 481 )---|----- --(-----)- ---------- ---------- ---------- -(------)- 541 ---------- ---------- ---<------ ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- ---------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 ---------- ---------- ---------- ---------- ---------- ---------- 781 ---------- ---------- ---------- -------->- ---------- |--------- 841 ---(----)- ---------- ---------- ---------- ---------- ---------- 901 ------(--- --)------- |--------- -------(-- ----)----- ---------- 961 -------<-- ---------- ---------- ---------- ---------- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- --->------ 1201 ---------- ---------- ---------- ---------< ---------- ---------- 1261 ---------- ---------- ---------> (------)-- ---------- ---|-(---) 1321 -------(-- -----)---- ---------- ---------- ---------- --<------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- >--------- ------(--- ---------- 1561 -------)-- ---------- ---------- -(-------) ---------- ---------- 1621 ---------- ---------- ---------- ---------( ------)--- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- -(-------) ---------- ---------- ---------- ---------- 1801 ---------- ---------- --<------- ---------- ---------- ---------- 1861 ----->---- ---------- --------<- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------> (--------- 2041 --)------- ---------- ------(--- -----)---- |--------- ---------- 2101 ---------- ---------- -------(-- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- -)-------- ---------- 2521 ----(----- )-----<--- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ----->---- --(------) ---------- ---------- ---------- 2701 ----uauuuu aa-aauuu-u aa-ugAACUG UUA-UUU-AU AGU------- ---------- 2761 -(-------- ---------- ---------- ---------- ----ugauu) ---------- 2821 --AUUU-U-U AG-UUUAAU( GUUUAAA-U) AUUUaACUA- --AUGGAGG- CACAGUU-Gu 2881 uc(u-auau) gua-ccaa-u a-aaaaauag uaaaauuaau u--------- ---------- 2941 ---------- ---------- ------ ---------- 3061 --------|- ---------- ---------- ---------- ---------< ---------- 3121 ---------- ---------- ---------- ---------- ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---->----- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- -<-------- ---------- ---------a 3721 uuuaauaaau aauuauuuga ucaaaauuag uacaaauauu au>guaaa-a uuu(aaaaa- 3781 -u-u)-aaau -auuu|u(a- uc)u|aauau u(--aacuua )ua|-uua-- ------<--- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ->-------- -------|-- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- ---------- 4021 ---------- ---------- ---------- ---------- ---------- ---------- 4081 -------|-- ---------| -------|-- ---------- ---------- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- ---------- ---------- ---------- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- --------(- 4441 ------)--- ---------- ---------- --------|- ---------- ---------- 4501 ---------- ---------- (-------)< ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ------->-- ---------- -|-------| ---------- ---------- 4681 --|------- ---------- ---------- (--------- ---------- ---------- 4741 ---------- -----)---- ------|--- ---------- ---------- -|-------- 4801 ---------- ---------- ----(----- --)---|--- ---------- ---------- 4861 ---------- ---------- ---------- -------(-- ---------- ------)<-- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 >--------- ---------- ---------- ----(----- ---------- ---------- 5041 ---------- ---------- ----)----- |-----|--- ---------- |--------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ---------- ---------- 5221 ---------- ---------- ---------- ---------- ---------- ---------- 5281 ---------- ---------- ---------- ---------- ---------- ---------- 5341 ---------- ---------- ---------- ---------- ---------- ---------- 5401 ---------- ---------- ---------- ---------- ---------- ---------- 5461 -----(---- ------)--- ---|------ --------|- ---------- -(-----)-- 5521 |--------- ---------- ---------- ---------- ---------- ---------- 5581 --<------- ---------- ---------- ---------- ---------- ---------- 5641 ---------- ---------- ------->-- ---------- ---------- ------ ---------- ---------- ---------- 6481 ---------- ---------- ---------- ---------- ---------- ---------- 6541 aauuuuuaaa auuauaauua -uauu-guu- ---------- ---------- ---------- 6601 ---------- ---------- ---------- ---------- ----<----- ---------- 6661 ---------- ---------- ---------- ---------- ---------- ---------- 6721 ---------- ---------- ---------- aauaaaauua uca>------ ---------- 6781 ------(--- )--------- -AGUUUCA|A AA---GCG-U UU(AUUAA)A UG-CGUC-UG 6841 UCUAAG|--- ---------- ---------- (-auuuaua- ------)--- ---------- 6901 ---------- UUUAAGAGU- aUUCUU- --------|- ---------- ---------- 7021 ---------- --(------- ---------- ---------- ---------- ---------- 7081 ---------- ---------- ---------- ---)------ ---------- ---------| 7141 ---------- --|----|-- -------(-- -----)---- --|U(AUA)- AG-UAGCAUA 7201 GUA-AU-U-U |GUUAAC(-U AAAU-)AUUA AA|GU-guuc ca-uAGAA-A A-UUUUAAAA 7261 UU-------- ---------- -------Au- -aacaaucau cgua-ac-ua au--aaauua 7321 aa|a|uaaaa au-uu(u--a aaa-a)aaau uaA----AAA AUUAAAAUAG GGCAAG-UCC 7381 UAC-UC-|-U CCUUU--ACA AA|--G-AGA ACA--U---| <--------- ---------- 7441 ---------- ---------- --->------ ---------- ---------- ---------- 7501 ---------- ---------- ---------- --<---uuaa u--------- ---------- 7561 ---------- ---------- ---------- ---------- ---------- ---------- 7621 ---------- ---------- ---------> --(------- -)-------- ---------- 7681 ---------- -------|-- ---------- ---------- ---------- ---------- 7741 -----(---- ----)----- ---------- ---------- ---------- --------<- 7801 ---------- ---------- ---------- ---------- ---------- ---------- 7861 ---------- ---------- ---------- ---------- ---------- ---------- 7921 ---------- ---------- ---------- ---------- ---------- ---------- 7981 ---------- ---------- ---------- ---------- ---------- ---------- 8041 ---------- ---------- ---------- ---------- ---------- ---------- 8101 ---------- ---------- ----->---- ---AU-G-UA -GUU-GU-AU GUUUGAUUG( 8161 GGG)CA-AUA C|UAUAUC(- --------UU GUUAUAUAG- )AAAA-AG|a |-|-----|< 8221 acuauaauua uugaa----- ---------- ---------- ---------- ---------- 8281 ---------- ---------- ---------- ---------- ---------- ---------- 8341 ---------- ---------- ---------- ---------- ---------- ->-------- 8401 ---|------ ------<--- ---------- ---------- ---------- ---------- 8461 ---------- ---------- ---------- ---------- ---------- ---------- 8521 ---------- ---------- ---------- ---------- ---------- ---------- 8581 ---------- ---------- ---------- ---------- ---------- ---------- 8641 ---------- ---------> (--------- )--------- ---------- ---------- 8701 ---------- ---------- ---------- -------|-- (-|-----)- ---------- 8761 ---------- ---------( ---------- )--------- ---------- ---------- 8821 ---------- ---------- ---------- ---(------ -)-------- ---------- 8881 -|-------- ---------- ---------- ---------- ---(------ ---------- 8941 ---------- ---------- ---------- ---------- ---------- --)--|---- 9001 --------a- |uAAUAAAAG GUUCGA|GCA G|GUUAACAA |G-CAU-U-A ---------- 9061 --(A--UAC- )--------- -----UAAAU GU-GUUUCAU CGUC|UA--C U|U|AUUGC| 9121 u--------- -----(auaa aaa)------ -------a|U UGAU(UGUUC )AUCAA-aaa 9181 u---GCAAU- --UCGUUAGU UGGGUUAAAA UC|GU-U(GU AA)AGCAGAU UUGUUUAUAU 9241 AU|UUAAU-A UU|U|<---- ---------- ---------- ------uuau uauuuuaaaa 9301 >--------- ---------- ----AUU-AA UAU-(UAGU- AC(-GCAA)G GAUU-)CAUU 9361 ---AU-<~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~>~ ~~~~~~~~~~ ~~~~~~~~~~ 9421 ~|~~~~~~~~ (~~~~~)<~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~> 9541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9601 ~~~~~~~~~~ ~~~~~~~~~~ (~~~~~~~~~ ~~~~~)~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9661 ~~~~~~~~~~ ~~~~~~~<~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~>~~| ~~~~~~(~~~ )~~~~~~~~~ ~~~~~~~|~~ 9961 ~~~(~~~~~~ ~~~)~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10021 ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~~~ 10141 ~~~~~~~~~~ ~~~~~~~~~~ ~)~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10201 ~~~~~~~~~~ ~|~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10321 ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ||||| // LOCUS mt.T.bruce 10775 bp RNA RNA ~?~???? DEFINITION Kinetoplast Trypanosoma brucei. ACCESSION No information KEYWORDS No information. SOURCE Kinetoplast Trypanosoma brucei. ORGANISM Kinetoplast Trypanosoma brucei. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Organism information Culture collection: ? Sequence information (bases 1 to 10775) Corresponding GenBank entry: X02547 Phylo:Mitochondria,Kinetoplast,Trypanosome BASE COUNT 464 a 66 c 129 g 493 t 9623 others ORIGIN 1 |~~~~~~~~~ auuuuaccaa uuaagaagaa uauuauaaua augggugucu uauauuuuaa 61 auaaauauuu aaauuccgug uaguaaauuu auuauuugua uuauuuauau aauaggugua 121 uuauauuuaa auuuuaaauu uguuguuuua uauuuagaua cauauuuaua gauuaauaua 181 uuuaaauaa- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 |--------| ---------- -|-------- ---------- ---------| -----(---- 361 ---------) -|-------- -------|-- -------(-- ---------- ---------- 421 -------)-- ---------- ---------- ---------- ---------- -----(---- 481 )---|----- --(-----)- ---------- ---------- ---------- -(------)- 541 ---------- ---------- ---<------ ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- ---------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 ---------- ---------- ---------- ---------- ---------- ---------- 781 ---------- ---------- ---------- -------->- ---------- |--------- 841 ---(----)- ---------- ---------- ---------- ---------- ---------- 901 ------(--- --)------- |--------- -------(-- ----)----- ---------- 961 -------<-- ---------- ---------- ---------- ---------- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- --->------ 1201 ---------- ---------- ---------- ---------< ---------- ---------- 1261 ---------- ---------- ---------> (------)-- ---------- ---|-(---) 1321 -------(-- -----)---- ---------- ---------- ---------- --<------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- >--------- ------(--- ---------- 1561 -------)-- ---------- ---------- -(-------) ---------- ---------- 1621 ---------- ---------- ---------- ---------( ------)--- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- -(-------) ---------- ---------- ---------- ---------- 1801 ---------- ---------- --<------- ---------- ---------- ---------- 1861 ----->---- ---------- --------<- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------> (--------- 2041 --)------- ---------- ------(--- -----)---- |--------- ---------- 2101 ---------- ---------- -------(-- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- -)-------- ---------- 2521 ----(----- )-----<--- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ----->---- --(------) ---------- ---------- ---------- 2701 -----uauuu ua-aaauu-u au-ugAACUG UAA-UUA-UU AGU------- ---------- 2761 -(-------- ---------- ---------- ---------- ----uuaau) ---------- 2821 --AUUU-U-U AG-UUUGAU( GUUGAAA-U) AUUUaAUUA- --AAGAUGU- UACAGUU-Gu 2881 uc(u-auau) gua-ccaa-a u-aaauauag uaagauuauu u--------- ---------- 2941 ---------- ---------- ------ ---------- 3061 --------|- ---------- ---------- ---------- ---------< ---------- 3121 ---------- ---------- ---------- ---------- ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---->----- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- -<-------- ---------- ---------a 3721 auuaauaaau aaauauuuau u-uuucu--u uguaaauauu au>gaaca-a uuu(aaaaa- 3781 -u-u)-aauc -uguu|u(a- ac)-|uaaaa u(--guuaua )ua|-uaa-- ------<--- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ->-------- -------|-- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- ---------- 4021 ---------- ---------- ---------- ---------- ---------- ---------- 4081 -------|-- ---------| -------|-- ---------- ---------- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- ---------- ---------- ---------- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- --------(- 4441 ------)--- ---------- ---------- --------|- ---------- ---------- 4501 ---------- ---------- (-------)< ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ------->-- ---------- -|-------| ---------- ---------- 4681 --|------- ---------- ---------- (--------- ---------- ---------- 4741 ---------- -----)---- ------|--- ---------- ---------- -|-------- 4801 ---------- ---------- ----(----- --)---|--- ---------- ---------- 4861 ---------- ---------- ---------- -------(-- ---------- ------)<-- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 >--------- ---------- ---------- ----(----- ---------- ---------- 5041 ---------- ---------- ----)----- |-----|--- ---------- |--------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ---------- ---------- 5221 ---------- ---------- ---------- ---------- ---------- ---------- 5281 ---------- ---------- ---------- ---------- ---------- ---------- 5341 ---------- ---------- ---------- ---------- ---------- ---------- 5401 ---------- ---------- ---------- ---------- ---------- ---------- 5461 -----(---- ------)--- ---|------ --------|- ---------- -(-----)-- 5521 |--------- ---------- ---------- ---------- ---------- ---------- 5581 --<------- ---------- ---------- ---------- ---------- ---------- 5641 ---------- ---------- ------->-- ---------- ---------- ------ ---------- ---------- ---------- 6481 ---------- ---------- ---------- ---------- ---------- ---------- 6541 -uuuuuuaaa aauauaaaaa -uauu-guu- ---------- ---------- ---------- 6601 ---------- ---------- ---------- ---------- ----<----- ---------- 6661 ---------- ---------- ---------- ---------- ---------- ---------- 6721 ---------- ---------- ---------- aauaaaauua ucg>------ ---------- 6781 ------(--- )--------- -UAUUUUA|A GU---GCG-U UU(AUUAA)A UG-CGUU-UG 6841 UCUAAG|--- ---------- ---------- (-auaauua- ------)--- ---------- 6901 ---------- UUUAAGAUU- aUUCUU- --------|- ---------- ---------- 7021 ---------- --(------- ---------- ---------- ---------- ---------- 7081 ---------- ---------- ---------- ---)------ ---------- ---------| 7141 ---------- --|----|-- -------(-- -----)---- --|U(UAU)- UG-UAGCAUA 7201 GUA-AU-U-U |GUUAAC(-U AAAU-)AUUA AA|GU-guuc ca-uAGAA-A A-UUUUUAAA 7261 UU-------- ---------- -------Ac- -aacaaauaa aaua-aa-gu au--gaauua 7321 au|a|ucaaa au-uu(u--a aua-a)aaau uaA----AAA AUUAAAAUAG GGCAAG-UCC 7381 UAC-UC-|-U CCUUU--ACA AA|--G-AGA ACA--U---| <--------- ---------- 7441 ---------- ---------- --->------ ---------- ---------- ---------- 7501 ---------- ---------- ---------- --<-uau-ga u--------- ---------- 7561 ---------- ---------- ---------- ---------- ---------- ---------- 7621 ---------- ---------- ---------> --(------- -)-------- ---------- 7681 ---------- -------|-- ---------- ---------- ---------- ---------- 7741 -----(---- ----)----- ---------- ---------- ---------- --------<- 7801 ---------- ---------- ---------- ---------- ---------- ---------- 7861 ---------- ---------- ---------- ---------- ---------- ---------- 7921 ---------- ---------- ---------- ---------- ---------- ---------- 7981 ---------- ---------- ---------- ---------- ---------- ---------- 8041 ---------- ---------- ---------- ---------- ---------- ---------- 8101 ---------- ---------- ----->---- ---AU-G-UA -AUU-GU-AU GUUUGAUUG( 8161 GGG)CA-AUA C|UAUAUU(- --------UA UUUAUAUAG- )CAUA-AG|a |-|-----|< 8221 acuauauucu uugaa----- ---------- ---------- ---------- ---------- 8281 ---------- ---------- ---------- ---------- ---------- ---------- 8341 ---------- ---------- ---------- ---------- ---------- ->-------- 8401 ---|------ ------<--- ---------- ---------- ---------- ---------- 8461 ---------- ---------- ---------- ---------- ---------- ---------- 8521 ---------- ---------- ---------- ---------- ---------- ---------- 8581 ---------- ---------- ---------- ---------- ---------- ---------- 8641 ---------- ---------> (--------- )--------- ---------- ---------- 8701 ---------- ---------- ---------- -------|-- (-|-----)- ---------- 8761 ---------- ---------( ---------- )--------- ---------- ---------- 8821 ---------- ---------- ---------- ---(------ -)-------- ---------- 8881 -|-------- ---------- ---------- ---------- ---(------ ---------- 8941 ---------- ---------- ---------- ---------- ---------- --)--|---- 9001 --------a- |uUAUAAAAG GUUCGA|GCA G|GUUAACAA |G-CAU-U-A ---------- 9061 --(A--AAA- )--------- -----UAAAU GU-GUUUCAU CGUC|UA--C U|U|AUUAC| 9121 c--------- -----(--a- -ug)------ -------a|U UGAU(UGUUC )AUCAA-aau 9181 a---GUAAU- --UCGUUAGU UGGGUUAAAA UC|GU-U(GU AA)AGCAGAU UUGUUUAUAU 9241 AU|UUAAU-U UU|U|<---- ---------- ---------- ------aua- auuaauaaua 9301 >--------- ---------- ----AUU-AA UAu-(AAGU- AC(-GCAA)G GAUU-)GAUU 9361 A--UU-~ ~~~~~~~~~~ ~~~~~~~~~~ 9421 ~|~~~~~~~~ (~~~~~)<~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~> 9541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9601 ~~~~~~~~~~ ~~~~~~~~~~ (~~~~~~~~~ ~~~~~)~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9661 ~~~~~~~~~~ ~~~~~~~<~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~>~~| ~~~~~~(~~~ )~~~~~~~~~ ~~~~~~~|~~ 9961 ~~~(~~~~~~ ~~~)~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10021 ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~~~ 10141 ~~~~~~~~~~ ~~~~~~~~~~ ~)~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10201 ~~~~~~~~~~ ~|~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10321 ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ||||| // LOCUS (2)-MYXOMY 10775 bp RNA RNA 09-JAN-1999 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 10775) Corresponding GenBank entry: DIVIDER BASE COUNT 0 a 0 c 0 g 0 t 10775 others ORIGIN 1 |......... .......... .......... .......... .......... .......... 61 .......... .......... .......... .......... .......... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......... .......... .......... .......... 241 .......... .......... .......... .......... .......... .......... 301 .......... .......... .......... .......... .......... .......... 361 .......... .......... .......... .......... .......... .......... 421 .......... .......... .......... .......... .......... .......... 481 .......... .......... .......... .......... .......... .......... 541 .......... .......... .......... .......... .......... .......... 601 .......... .......... .......... .......... .......... .......... 661 .......... .......... .......... .......... .......... .......... 721 .......... .......... .......... .......... .......... .......... 781 .......... .......... .......... .......... .......... .......... 841 .......... .......... .......... .......... .......... .......... 901 .......... .......... .......... .......... .......... .......... 961 .......... .......... .......... .......... .......... .......... 1021 .......... .......... .......... .......... .......... .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .......... .......... .......... .......... .......... 1201 .......... .......... .......... .......... .......... .......... 1261 .......... .......... .......... .......... .......... .......... 1321 .......... .......... .......... .......... .......... .......... 1381 .......... .......... .......... .......... .......... .......... 1441 .......... .......... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... .......... .......... .......... .......... .......... 1621 .......... .......... .......... .......... .......... .......... 1681 .......... .......... .......... .......... .......... .......... 1741 .......... .......... .......... .......... .......... .......... 1801 .......... .......... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .......... .......... 1921 .......... .......... .......... .......... .......... .......... 1981 .......... .......... .......... .......... .......... .......... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... .......... .......... .......... .......... .......... 2161 .......... .......... .......... .......... .......... .......... 2221 .......... .......... .......... .......... .......... .......... 2281 .......... .......... .......... .......... .......... .......... 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... .......... 2701 .......... .......... .......... .......... .......... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... .......... 2881 .......... .......... .......... .......... .......... .......... 2941 .......... .......... .......... .......... .......... .......... 3001 .......... .......... .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .......... .......... 3181 .......... .......... .......... .......... .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .......... .......... .......... 3361 .......... .......... .......... .......... .......... .......... 3421 .......... .......... .......... .......... .......... .......... 3481 .......... .......... .......... .......... .......... .......... 3541 .......... .......... .......... .......... .......... .......... 3601 .......... .......... .......... .......... .......... .......... 3661 .......... .......... .......... .......... .......... .......... 3721 .......... .......... .......... .......... .......... .......... 3781 .....-.... .......... .......... .......... .......... .......... 3841 .......... .......... .......... .......... .......... .......... 3901 .......... .......... .......... .......... .......... .......... 3961 .......... .......... .......... .......... .......... .......... 4021 .......... .......... .......... .......... .......... .......... 4081 .......... .......... .......... .......... .......... .......... 4141 .......... .......... .......... .......... .......... .......... 4201 .......... .......... .......... .......... .......... .......... 4261 .......... .......... .......... .......... .......... .......... 4321 .......... .......... .......... .......... .......... .......... 4381 .......... .......... .......... .......... .......... .......... 4441 .......... .......... .......... .......... .......... .......... 4501 .......... .......... .......... .......... .......... .......... 4561 .......... .......... .......... .......... .......... .......... 4621 .......... .......... .......... .......... .......... .......... 4681 .......... .......... .......... .......... .......... .......... 4741 .......... .......... .......... .......... .......... .......... 4801 .......... .......... .......... ..)....... .......... .......... 4861 .......... .......... .......... .......... .......... .......... 4921 .......... .......... .......... .......... .......... .......... 4981 .......... .......... .......... .......... .......... .......... 5041 .......... .......... .......... .......... .......... .......... 5101 .......... .......... .......... .......... .......... .......... 5161 .......... .......... .......... .......... .......... .......... 5221 .......... .......... .......... .......... .......... .......... 5281 .......... .......... .......... .......... .......... .......... 5341 .......... .......... .......... .......... .......... .......... 5401 .......... .......... .......... .......... .......... .......... 5461 .......... .......... .......... .......... .......... .......... 5521 .......... .......... .......... .......... .......... .......... 5581 .......... .......... .......... .......... .......... .......... 5641 .......... .......... .......... .......... .......... .......... 5701 .......... .......... .......... .......... .......... .......... 5761 .......... .......... .......... .......... .......... .......... 5821 .......... .......... .......... .......... .......... .......... 5881 .......... .......... .......... .......... .......... .......... 5941 .......... .......... .......... .......... .......... .......... 6001 .......... .......... .......... .......... .......... .......... 6061 .......... .......... .......... .......... .......... .......... 6121 .......... .......... .......... .......... .......... .......... 6181 .......... .......... .......... .......... .......... .......... 6241 .......... .......... .......... .......... .......... .......... 6301 .......... .......... .......... .......... .......... .......... 6361 .......... .......... .......... .......... .......... .......... 6421 .......... .......... .......... .......... .......... .......... 6481 .......... .......... .......... .......... .......... .......... 6541 .......... .......... .......... .......... .......... .......... 6601 .......... .......... .......... .......... .......... .......... 6661 .......... .......... .......... .......... .......... .......... 6721 .......... .......... .......... .......... .......... .......... 6781 .......... .......... .......... .......... .......... .......... 6841 .......... .......... .......... .......... .......... .......... 6901 .......... .......... .......... .......... .......... .......... 6961 .......... .......... .......... .......... .......... .......... 7021 .......... .......... .......... .......... .......... .......... 7081 .......... .......... .......... .......... .......... .......... 7141 .......... .......... .......... .......... .......... .......... 7201 .......... .......... .......... .......... .......... .......... 7261 .......... .......... .......... .......... .......... .......... 7321 .......... .......... .......... .......... .......... .......... 7381 .......... .......... .......... .......... .......... .......... 7441 .......... .......... .......... .......... .......... .......... 7501 .......... .......... .......... .......... .......... .......... 7561 .......... .......... .......... .......... .......... .......... 7621 .......... .......... .......... .......... .......... .......... 7681 .......... .......... .......... .......... .......... .......... 7741 .......... .......... .......... .......... .......... .......... 7801 .......... .......... .......... .......... .......... .......... 7861 .......... .......... .......... .......... .......... .......... 7921 .......... .......... .......... .......... .......... .......... 7981 .......... .......... .......... .......... .......... .......... 8041 .......... .......... .......... .......... .......... .......... 8101 .......... .......... .......... .......... .......... .......... 8161 .......... .......... .......... .......... .......... .......... 8221 .......... .......... .......... .......... .......... .......... 8281 .......... .......... .......... .......... .......... .......... 8341 .......... .......... .......... .......... .......... .......... 8401 .......... .......... .......... .......... .......... .......... 8461 .......... .......... .......... .......... .......... .......... 8521 .......... .......... .......... .......... .......... .......... 8581 .......... .......... .......... .......... .......... .......... 8641 .......... .......... .......... .......... .......... .......... 8701 .......... .......... .......... .......... .......... .......... 8761 .......... .......... .......... .......... .......... .......... 8821 .......... .......... .......... .......... .......... .......... 8881 .......... .......... .......... .......... .......... .......... 8941 .......... .......... .......... .......... .......... .......... 9001 .......... .......... .......... .......... .......... .......... 9061 .......... .......... .......... .......... .......... .......... 9121 .......... .......... .......... .......... .......... .......... 9181 .......... .......... .......... .......... .......... .......... 9241 .......... .......... .......... .......... .......... .......... 9301 .......... .......... .......... .......... .......... .......... 9361 .......... .......... .......... .......... .......... .......... 9421 .......... .......... .......... .......... .......... .......... 9481 .......... .......... .......... .......... .......... .......... 9541 .......... .......... .......... .......... .......... .......... 9601 .......... .......... .......... .......... .......... .......... 9661 .......... .......... .......... .......... .......... .......... 9721 .......... .......... .......... .......... .......... .......... 9781 .......... .......... .......... .......... .......... .......... 9841 .......... .......... .......... .......... .......... .......... 9901 .......... .......... .......... .......... .......... .......... 9961 .......... .......... .......... .......... .......... .......... 10021 .......... .......... .......... .......... .......... .......... 10081 .......... .......... .......... .......... .......... .......... 10141 .......... .......... .......... .......... .......... .......... 10201 .......... .......... .......... .......... .......... .......... 10261 .......... .......... .......... .......... .......... .......... 10321 .......... .......... .......... .......... .......... .......... 10381 .......... .......... .......... .......... .......... .......... 10441 .......... .......... .......... .......... .......... .......... 10501 .......... .......... .......... .......... .......... .......... 10561 .......... .......... .......... .......... .......... .......... 10621 .......... .......... .......... .......... .......... .......... 10681 .......... .......... .......... .......... .......... .......... 10741 .......... .......... .......... ||||| // LOCUS mt.P.polyc 10775 bp RNA RNA 18-AUG-1998 DEFINITION Mitochondrion Physarum polycephalum. subsp. RNA-Edited sequence; . ACCESSION AF080601 KEYWORDS . SOURCE Mitochondrion Physarum polycephalum. subsp. RNA-Edited sequence. ORGANISM Mitochondrion Physarum polycephalum. REFERENCE 1 (bases 1 to 2779) AUTHORS Yang,N., Costandy,H., Spottswood,M.R. and Miller,D.L. TITLE of Physarum polycephalum RNA editing of the mitochondrial large subunit ribosomal RNA JOURNAL Unpublished STANDARD No information REFERENCE 2 (bases 1 to 2779) AUTHORS Yang,N., Costandy,H., Spottswood,M.R. and Miller,D.L. TITLE Direct Submission JOURNAL Submitted (27-JUL-1998) Cell and Molecular Biology, University of Texas at Dallas, 2601 North Floyd Road, Richardson, TX 75080, USA STANDARD No information COMMENTS Sequence information (bases 1 to 10775) Corresponding GenBank entry: AF080601 BASE COUNT 941 a 420 c 515 g 903 t 7996 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~uacu-u uuaagaaucu aua------- ---------- ---------- 241 ---------- ---------- ---------- -----auaaA AAUUCUUGA- ----CGGAUA 301 |UAU--AGA| UUU-UUUA-U G|uaggcu-- ---------a uucaauaca| -aucu(-uau 361 agg------) a|gauauua- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---- -----aUAAC |AUAAUGAAU 841 UGA(AACA)U CUCAGUA--- -AUUAU---- ---------- ---------- ----GGAUUA 901 UAAACA(-AA CC)UG-A-AU |UUU-AUUA- -GUAG-U(-G GUGA)GCGAA -CAUAAAAU- 961 -auuuua------ 1201 ---------- ---------- ---------- ---------< ---------- ---------- 1261 ---------- ---------- ---------> (------)-- ---------- GUg|U(GUC) 1321 A--GAAG(UU AAAAC)CUUg ua-------- ---------- ---------- ----------- ------(--- ---------- 1561 -------)-- ---------- ------ugga g(uacca-c) -cuuca---a uauua-aaca 1621 ---CA-UAAA A-AAAUCGAU AGCG-AA--- -AAAGUACC( -GUGA-)GGG ---AAC-UA- 1681 UG-------- ---------- ---------- ---------- ---------- ---------- 1741 aaaagcacuc g(aucua-a) agag------ ---------- ------guUG AA--AUAGA- 1801 UCUUG-AAAU CAAG-AAU-U U-<------- ---------- ---------- ---------- 1861 ----->AAAA GCAuuugaug uuuuu---<- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------> (----caagg 2041 --)---aaaa auaccaaa-G UACCUU(UU- GUAUC)AUGG |AUC-AACGA GA-----UA- 2101 AAUGAAAAAG CAA--gcuua u-au---(-- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ------auua u)-----aua gcauag-cga 2521 aag-(-caaa )--uuu---- --(------) ---------- -----UUGAG UUUUU-UCAU 2701 UUA-AACCCG AA-ACCUA-G UG-AUCUAAU CAU-GAG-CA GAUUGAA--- A-UG--AG-U 2761 -(-------- ---------- ---------- ---------- -----uaac) AACUUUUGGA 2821 GGAUCGAA-C CCUU-UUCU( GUUGCAU-C) AGAA-UGGGA --UGACUUG- UGAUUAG-GG 2881 GU(G-AAAG) GCU-AAUC-A A-ACUAGGAG AUAGCU-GGU UUUCU--GCG AA-AUG-UAU 2941 (-UUAG)GUA CC-GU-GAUA GUUU-u uuc|-cuggu 3061 c|guaaag|c aagaagc-gg ga-uau--aa aagcuu--(u uaauc---)< ---------- 3121 ---------- ---------- ---------- ---------- ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---->--aag cua-cu---c 3301 auu--c---- aaacu-c--- uaaa|-gaca -g-g---gaa a--------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- -uuu--AU-C -UAUU-AUAC AGACU--UU- GG-GU(-GCU 3481 AAG)GUCCUU GG-UC----U AAAGGA(GAA -GAG)UCC-U CACAC-U-CA -GC-UAA--- 3541 --GGA-CCGC -AAU-AA-A- ACUUAAGUC- ---------- ---aaagau- aucuuauuac 3601 -aa------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- AGACA-AAAC G<-------- ---------- ---------- 3721 ---------- ---------- ---------- ---------- -->GAUGU-A GGC(UUUCAA 3781 GC-A)-GCCA -UCUU|U(U- AA)A|GAAAG C(--GUUACA )GC|-UCAC- GUUUCA<--- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 --agu-a--c -aa-gau|au uaca------ ---------- ---------- ----aauaaa 3961 ggauu----- ---------- ---------- ---------- ---------- ---------- 4021 ---------- ---uuucguu uua------- ---------- ---------- ---------- 4081 -------|UC CAAA--GCU| A--G-UG|aa ---------- ---------- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- ---------- ---------- ---------- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- --------(u 4441 uuuauu)--- ---------u -u-----GAU AGCAG-AA|- UC-CUUAGUU U---UUAAUG 4501 G--------- -AUAA-UUUA (GUAA---)< ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ------->UA UUU--UAU-U U|-UAA---| AUCUAAGUGA AAAAUGU-UG 4681 AU|AUCAGUA -GUUU-UUA- uaa-cg---- (auua----- ---------- ---------- 4741 ---------- -----)---- uguuau|cgc c-aaag-uuu aaa--GGUUU -|----CCUU 4801 AUCCA---UU ---------- ----(--CUU UA)A-A|-GA UAAGGG---- ---------- 4861 ---UUAUA-- -CGUCCUCUC A-U-G-U--- UUUAGC-(-G AAA------- ------)<-- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 >--gca---a ca---a-caa ag-gaguuu- gaug(----- ---------- ---------- 5041 ---------- -auuaaaaau ----)cauuu |---gu|uuu a--auauugu -ga------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ---------- ---------- 5221 ---------- ---------- ---------- ---------- ---------- ---------- 5281 ---------- ---------- ---------- ---------- ---------- ---------- 5341 ---------- ---------- ---------- ---------- ---------- ---------- 5401 ---------- ---------- ---------- ---------- ---------- ---------- 5461 ---------- ---------- ---------- ---------- ---------- ---------- 5521 ---------- ---------- ---------- ---------- ---------- ---------- 5581 ---------- ---------- ---------- ---------- ---------- ---------- 5641 ---------- ---------- ---------- ---------- ---------- ------ ---------- guuaaa-aua aaacgua|cu 6481 ---aAAACC- -(GACACU)G G|uaaac-ua gua-(-aa-u ------)-ua cugcggcg-| 6541 |--AUGGA-U U--AACUAUA -CUAA-AGGA ACUCGGCAAA UUCAAU-CUG UAAC(UUUU- 6601 )GGAGAA-AG AUU|aucaua auuuucc--- ---------- ---------- -------UGU 6781 -GAU|G(GCA )C--AGAAUA GAGGGUAG|C GA---CUG-U UU(AUUAA)A AA-CACA-GG 6841 ACUCUG|CU- -AAGUA---- ---------- (--UAAA--- ------)--- ---------- 6901 UAUGAUGUA- UAG--GUCUG AGACCU<--- ---------- ---------- ---------- 6961 ---------- ---------- -------->G CC-CG-GU|G UCAGUA-ggu aaacga-ga- 7021 --cugauu-a u-(------- ---------- ---------- ---------- ---------- 7081 --------cu uuaagucucu uucagauaau uua)auu-ug uuag--ucuc u-uaaauca| 7141 CU-GGUA-AA C-|GG-C|-G -GCUGU-(AA CUAUG)ACGG UC|C(UAA)- GG-UAGCGAA 7201 AUU-CC-U-U |GUCGGG(-U AAGU-)UCCG AC|GU-GCAC GAAUGGUGUA A-CGACUUCC 7261 CU-------- ---------- -------ACU GUCUCUAGUG UAGA-UC-CA ----AUGAAA 7321 UU|G|GAAUU AU-UG(U-GA AGAUA)CGAU AUA----GAA AUAGCCAGAC GGAAAG-ACC 7381 CUGUGA-|-A CCUUU--ACU AU|--a-ugc uuu--uauu| ------ ---------- ---------- ---------- 7501 ---------- ---------- ---------- --<------- ---------- ---------- 7561 ---------- ---------- ---------- ---------- ---------- ---------- 7621 ---------- ---------- ---------> --(------- -)-------- ---------- 7681 ---------- -------|-- ---------- ---------- ---------- ---------- 7741 -----(---- ----)----- ---------- ---------- ---------- ---------uuu aauga-a-ag -ugg--U-UA GUUUGACUG( 8161 GGG)CG-GU- A|GCCUCC(- --------CA AAUCGUAAC- )GGA----|G |U|GCG--|< 8221 uacaaaagau uuguuacguu uagauuuauc uacac----- ---------- ---------- 8281 ---------- ---------- ---------- ---------- ---------- ---------- 8341 ---------- ---------- ---------- ---------- ---------- ->-------- 8401 ---|------ ---------- ---------- ---------- ---------- ---------- 8461 ---------- ---------- ---------- ---------- ---------- ---------- 8521 ---------- ---------- ---------- ---------- ---------- ---------- 8581 ---------- ---------- ---------- ---------- ---------- ---------- 8641 ---------- ---------> (--------- )--------- ---------- ---------- 8701 ---------- ---------- ---------- ---gaua|GC (G|CAAGG)G Cua-aua-cu 8761 u-gu-CUGAC UGUUU-GAA( -ugacaa--- )UUCAU-UCA G--------- ---------- 8821 ---------- ---ggauuUA UU-------- ---(UUUA-- -)-------- ----AAUCGG 8881 U|---CCUAG UAAUC-CAAU CU-U------ ---------- AAC(------ ---------- 8941 ---------- ---------- ---------- ---------- ----CUGUGG GC)GU|AGGA 9001 UUGC-CAAC- |GAAUAAAAG GUACUC|CGG G|GAUAACAG |G-CUG-A-U AAUUCCUUAG 9061 AG(U--ACCU )AUCGACGGA --AUUGUUUG GC-ACCUCGA UGUC|GG--C U|C|AUCAC| 9121 AU-CC-UGAG AC-UG(--AA -AA)GGGCCU CAAG-GGU|U CGGU(UGUUC )ACCGA-UUA 9181 AU-AGUGGU- --ACGUGAGC UGGGUUUAGA AC|GU-C(GU GA)GACAGUU CGGUCCCUAU 9241 CU|acuau-u uc|a|<---- ---------- ---------- ---------- ---------- 9301 >----u-aag acguaa-aag uug-UUC-UG UC--(UAGU- AC(-GAAA)G GACU-)GGUG 9361 G--AA-<--- ---------- ---------- -------->C GAUUCCU-CU GGUUUUUGAG 9421 C|-ugu---- (uugc-)<-- ---------- ---------- ---------- ---------- 9481 ---------- ---------- ---------- ---------- ---------- ---------> 9541 ----GCAC-G CUCA--UUCG CUAC-GAAUC UU-------- ---------- -------UUA 9601 ---------- -UUAAUCGCU (GAAAGC--A U-CUA)A-GC -GA-GAAAUA Au-acuu--- 9661 -uaag--u-- -cuuuu-<-- ---------- ---------- ---------- ---------- 9721 ---------- ---------- ---------- ---------- ---------- ---------- 9781 ---------- ---------- ---------- ---------- ---------- ---------- 9841 ---------- ---------- ---------- ---------- ---------- ---------- 9901 ---------- ---------- ------>--| ------(--- )--------- ---uaac|CG 9961 UUG(UAGACU A--)UAACGU C--------- ---------- ---------- ------aaua 10021 g|gcucauga ---------- ---------- ---------- ---------- ---------- 10081 ---------- ---aaugcau guc------- ---------- --------(- ---------- 10141 guaagauuug auuauagagu a)gaugcuug caaaagcuuu ---------- ---------- 10201 ---acucacc a|a|ucauca cuaac----- ---------- ---------- ---------- 10261 ---------- ---cauua-- ---------- ---------- ---caa---- ---auuuuac 10321 cuu-----|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ||||| // LOCUS (2)-CROWN 10775 bp RNA RNA 09-JAN-1999 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 10775) Corresponding GenBank entry: DIVIDER BASE COUNT 0 a 0 c 0 g 0 t 10775 others ORIGIN 1 |......... .......... .......... .......... .......... .......... 61 .......... .......... .......... .......... .......... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......... .......... .......... .......... 241 .......... .......... .......... .......... .......... .......... 301 .......... .......... .......... .......... .......... .......... 361 .......... .......... .......... .......... .......... .......... 421 .......... .......... .......... .......... .......... .......... 481 .......... .......... .......... .......... .......... .......... 541 .......... .......... .......... .......... .......... .......... 601 .......... .......... .......... .......... .......... .......... 661 .......... .......... .......... .......... .......... .......... 721 .......... .......... .......... .......... .......... .......... 781 .......... .......... .......... .......... .......... .......... 841 .......... .......... .......... .......... .......... .......... 901 .......... .......... .......... .......... .......... .......... 961 .......... .......... .......... .......... .......... .......... 1021 .......... .......... .......... .......... .......... .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .......... .......... .......... .......... .......... 1201 .......... .......... .......... .......... .......... .......... 1261 .......... .......... .......... .......... .......... .......... 1321 .......... .......... .......... .......... .......... .......... 1381 .......... .......... .......... .......... .......... .......... 1441 .......... .......... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... .......... .......... .......... .......... .......... 1621 .......... .......... .......... .......... .......... .......... 1681 .......... .......... .......... .......... .......... .......... 1741 .......... .......... .......... .......... .......... .......... 1801 .......... .......... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .......... .......... 1921 .......... .......... .......... .......... .......... .......... 1981 .......... .......... .......... .......... .......... .......... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... .......... .......... .......... .......... .......... 2161 .......... .......... .......... .......... .......... .......... 2221 .......... .......... .......... .......... .......... .......... 2281 .......... .......... .......... .......... .......... .......... 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... .......... 2701 .......... .......... .......... .......... .......... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... .......... 2881 .......... .......... .......... .......... .......... .......... 2941 .......... .......... .......... .......... .......... .......... 3001 .......... .......... .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .......... .......... 3181 .......... .......... .......... .......... .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .......... .......... .......... 3361 .......... .......... .......... .......... .......... .......... 3421 .......... .......... .......... .......... .......... .......... 3481 .......... .......... .......... .......... .......... .......... 3541 .......... .......... .......... .......... .......... .......... 3601 .......... .......... .......... .......... .......... .......... 3661 .......... .......... .......... .......... .......... .......... 3721 .......... .......... .......... .......... .......... .......... 3781 .....-.... .......... .......... .......... .......... .......... 3841 .......... .......... .......... .......... .......... .......... 3901 .......... .......... .......... .......... .......... .......... 3961 .......... .......... .......... .......... .......... .......... 4021 .......... .......... .......... .......... .......... .......... 4081 .......... .......... .......... .......... .......... .......... 4141 .......... .......... .......... .......... .......... .......... 4201 .......... .......... .......... .......... .......... .......... 4261 .......... .......... .......... .......... .......... .......... 4321 .......... .......... .......... .......... .......... .......... 4381 .......... .......... .......... .......... .......... .......... 4441 .......... .......... .......... .......... .......... .......... 4501 .......... .......... .......... .......... .......... .......... 4561 .......... .......... .......... .......... .......... .......... 4621 .......... .......... .......... .......... .......... .......... 4681 .......... .......... .......... .......... .......... .......... 4741 .......... .......... .......... .......... .......... .......... 4801 .......... .......... .......... ..)....... .......... .......... 4861 .......... .......... .......... .......... .......... .......... 4921 .......... .......... .......... .......... .......... .......... 4981 .......... .......... .......... .......... .......... .......... 5041 .......... .......... .......... .......... .......... .......... 5101 .......... .......... .......... .......... .......... .......... 5161 .......... .......... .......... .......... .......... .......... 5221 .......... .......... .......... .......... .......... .......... 5281 .......... .......... .......... .......... .......... .......... 5341 .......... .......... .......... .......... .......... .......... 5401 .......... .......... .......... .......... .......... .......... 5461 .......... .......... .......... .......... .......... .......... 5521 .......... .......... .......... .......... .......... .......... 5581 .......... .......... .......... .......... .......... .......... 5641 .......... .......... .......... .......... .......... .......... 5701 .......... .......... .......... .......... .......... .......... 5761 .......... .......... .......... .......... .......... .......... 5821 .......... .......... .......... .......... .......... .......... 5881 .......... .......... .......... .......... .......... .......... 5941 .......... .......... .......... .......... .......... .......... 6001 .......... .......... .......... .......... .......... .......... 6061 .......... .......... .......... .......... .......... .......... 6121 .......... .......... .......... .......... .......... .......... 6181 .......... .......... .......... .......... .......... .......... 6241 .......... .......... .......... .......... .......... .......... 6301 .......... .......... .......... .......... .......... .......... 6361 .......... .......... .......... .......... .......... .......... 6421 .......... .......... .......... .......... .......... .......... 6481 .......... .......... .......... .......... .......... .......... 6541 .......... .......... .......... .......... .......... .......... 6601 .......... .......... .......... .......... .......... .......... 6661 .......... .......... .......... .......... .......... .......... 6721 .......... .......... .......... .......... .......... .......... 6781 .......... .......... .......... .......... .......... .......... 6841 .......... .......... .......... .......... .......... .......... 6901 .......... .......... .......... .......... .......... .......... 6961 .......... .......... .......... .......... .......... .......... 7021 .......... .......... .......... .......... .......... .......... 7081 .......... .......... .......... .......... .......... .......... 7141 .......... .......... .......... .......... .......... .......... 7201 .......... .......... .......... .......... .......... .......... 7261 .......... .......... .......... .......... .......... .......... 7321 .......... .......... .......... .......... .......... .......... 7381 .......... .......... .......... .......... .......... .......... 7441 .......... .......... .......... .......... .......... .......... 7501 .......... .......... .......... .......... .......... .......... 7561 .......... .......... .......... .......... .......... .......... 7621 .......... .......... .......... .......... .......... .......... 7681 .......... .......... .......... .......... .......... .......... 7741 .......... .......... .......... .......... .......... .......... 7801 .......... .......... .......... .......... .......... .......... 7861 .......... .......... .......... .......... .......... .......... 7921 .......... .......... .......... .......... .......... .......... 7981 .......... .......... .......... .......... .......... .......... 8041 .......... .......... .......... .......... .......... .......... 8101 .......... .......... .......... .......... .......... .......... 8161 .......... .......... .......... .......... .......... .......... 8221 .......... .......... .......... .......... .......... .......... 8281 .......... .......... .......... .......... .......... .......... 8341 .......... .......... .......... .......... .......... .......... 8401 .......... .......... .......... .......... .......... .......... 8461 .......... .......... .......... .......... .......... .......... 8521 .......... .......... .......... .......... .......... .......... 8581 .......... .......... .......... .......... .......... .......... 8641 .......... .......... .......... .......... .......... .......... 8701 .......... .......... .......... .......... .......... .......... 8761 .......... .......... .......... .......... .......... .......... 8821 .......... .......... .......... .......... .......... .......... 8881 .......... .......... .......... .......... .......... .......... 8941 .......... .......... .......... .......... .......... .......... 9001 .......... .......... .......... .......... .......... .......... 9061 .......... .......... .......... .......... .......... .......... 9121 .......... .......... .......... .......... .......... .......... 9181 .......... .......... .......... .......... .......... .......... 9241 .......... .......... .......... .......... .......... .......... 9301 .......... .......... .......... .......... .......... .......... 9361 .......... .......... .......... .......... .......... .......... 9421 .......... .......... .......... .......... .......... .......... 9481 .......... .......... .......... .......... .......... .......... 9541 .......... .......... .......... .......... .......... .......... 9601 .......... .......... .......... .......... .......... .......... 9661 .......... .......... .......... .......... .......... .......... 9721 .......... .......... .......... .......... .......... .......... 9781 .......... .......... .......... .......... .......... .......... 9841 .......... .......... .......... .......... .......... .......... 9901 .......... .......... .......... .......... .......... .......... 9961 .......... .......... .......... .......... .......... .......... 10021 .......... .......... .......... .......... .......... .......... 10081 .......... .......... .......... .......... .......... .......... 10141 .......... .......... .......... .......... .......... .......... 10201 .......... .......... .......... .......... .......... .......... 10261 .......... .......... .......... .......... .......... .......... 10321 .......... .......... .......... .......... .......... .......... 10381 .......... .......... .......... .......... .......... .......... 10441 .......... .......... .......... .......... .......... .......... 10501 .......... .......... .......... .......... .......... .......... 10561 .......... .......... .......... .......... .......... .......... 10621 .......... .......... .......... .......... .......... .......... 10681 .......... .......... .......... .......... .......... .......... 10741 .......... .......... .......... ||||| // LOCUS (3)-ACANTH 10775 bp RNA RNA 09-JAN-1999 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 10775) Corresponding GenBank entry: DIVIDER BASE COUNT 0 a 0 c 0 g 0 t 10775 others ORIGIN 1 |......... .......... .......... .......... .......... .......... 61 .......... .......... .......... .......... .......... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......... .......... .......... .......... 241 .......... .......... .......... .......... .......... .......... 301 .......... .......... .......... .......... .......... .......... 361 .......... .......... .......... .......... .......... .......... 421 .......... .......... .......... .......... .......... .......... 481 .......... .......... .......... .......... .......... .......... 541 .......... .......... .......... .......... .......... .......... 601 .......... .......... .......... .......... .......... .......... 661 .......... .......... .......... .......... .......... .......... 721 .......... .......... .......... .......... .......... .......... 781 .......... .......... .......... .......... .......... .......... 841 .......... .......... .......... .......... .......... .......... 901 .......... .......... .......... .......... .......... .......... 961 .......... .......... .......... .......... .......... .......... 1021 .......... .......... .......... .......... .......... .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .......... .......... .......... .......... .......... 1201 .......... .......... .......... .......... .......... .......... 1261 .......... .......... .......... .......... .......... .......... 1321 .......... .......... .......... .......... .......... .......... 1381 .......... .......... .......... .......... .......... .......... 1441 .......... .......... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... .......... .......... .......... .......... .......... 1621 .......... .......... .......... .......... .......... .......... 1681 .......... .......... .......... .......... .......... .......... 1741 .......... .......... .......... .......... .......... .......... 1801 .......... .......... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .......... .......... 1921 .......... .......... .......... .......... .......... .......... 1981 .......... .......... .......... .......... .......... .......... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... .......... .......... .......... .......... .......... 2161 .......... .......... .......... .......... .......... .......... 2221 .......... .......... .......... .......... .......... .......... 2281 .......... .......... .......... .......... .......... .......... 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... .......... 2701 .......... .......... .......... .......... .......... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... .......... 2881 .......... .......... .......... .......... .......... .......... 2941 .......... .......... .......... .......... .......... .......... 3001 .......... .......... .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .......... .......... 3181 .......... .......... .......... .......... .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .......... .......... .......... 3361 .......... .......... .......... .......... .......... .......... 3421 .......... .......... .......... .......... .......... .......... 3481 .......... .......... .......... .......... .......... .......... 3541 .......... .......... .......... .......... .......... .......... 3601 .......... .......... .......... .......... .......... .......... 3661 .......... .......... .......... .......... .......... .......... 3721 .......... .......... .......... .......... .......... .......... 3781 .....-.... .......... .......... .......... .......... .......... 3841 .......... .......... .......... .......... .......... .......... 3901 .......... .......... .......... .......... .......... .......... 3961 .......... .......... .......... .......... .......... .......... 4021 .......... .......... .......... .......... .......... .......... 4081 .......... .......... .......... .......... .......... .......... 4141 .......... .......... .......... .......... .......... .......... 4201 .......... .......... .......... .......... .......... .......... 4261 .......... .......... .......... .......... .......... .......... 4321 .......... .......... .......... .......... .......... .......... 4381 .......... .......... .......... .......... .......... .......... 4441 .......... .......... .......... .......... .......... .......... 4501 .......... .......... .......... .......... .......... .......... 4561 .......... .......... .......... .......... .......... .......... 4621 .......... .......... .......... .......... .......... .......... 4681 .......... .......... .......... .......... .......... .......... 4741 .......... .......... .......... .......... .......... .......... 4801 .......... .......... .......... ..)....... .......... .......... 4861 .......... .......... .......... .......... .......... .......... 4921 .......... .......... .......... .......... .......... .......... 4981 .......... .......... .......... .......... .......... .......... 5041 .......... .......... .......... .......... .......... .......... 5101 .......... .......... .......... .......... .......... .......... 5161 .......... .......... .......... .......... .......... .......... 5221 .......... .......... .......... .......... .......... .......... 5281 .......... .......... .......... .......... .......... .......... 5341 .......... .......... .......... .......... .......... .......... 5401 .......... .......... .......... .......... .......... .......... 5461 .......... .......... .......... .......... .......... .......... 5521 .......... .......... .......... .......... .......... .......... 5581 .......... .......... .......... .......... .......... .......... 5641 .......... .......... .......... .......... .......... .......... 5701 .......... .......... .......... .......... .......... .......... 5761 .......... .......... .......... .......... .......... .......... 5821 .......... .......... .......... .......... .......... .......... 5881 .......... .......... .......... .......... .......... .......... 5941 .......... .......... .......... .......... .......... .......... 6001 .......... .......... .......... .......... .......... .......... 6061 .......... .......... .......... .......... .......... .......... 6121 .......... .......... .......... .......... .......... .......... 6181 .......... .......... .......... .......... .......... .......... 6241 .......... .......... .......... .......... .......... .......... 6301 .......... .......... .......... .......... .......... .......... 6361 .......... .......... .......... .......... .......... .......... 6421 .......... .......... .......... .......... .......... .......... 6481 .......... .......... .......... .......... .......... .......... 6541 .......... .......... .......... .......... .......... .......... 6601 .......... .......... .......... .......... .......... .......... 6661 .......... .......... .......... .......... .......... .......... 6721 .......... .......... .......... .......... .......... .......... 6781 .......... .......... .......... .......... .......... .......... 6841 .......... .......... .......... .......... .......... .......... 6901 .......... .......... .......... .......... .......... .......... 6961 .......... .......... .......... .......... .......... .......... 7021 .......... .......... .......... .......... .......... .......... 7081 .......... .......... .......... .......... .......... .......... 7141 .......... .......... .......... .......... .......... .......... 7201 .......... .......... .......... .......... .......... .......... 7261 .......... .......... .......... .......... .......... .......... 7321 .......... .......... .......... .......... .......... .......... 7381 .......... .......... .......... .......... .......... .......... 7441 .......... .......... .......... .......... .......... .......... 7501 .......... .......... .......... .......... .......... .......... 7561 .......... .......... .......... .......... .......... .......... 7621 .......... .......... .......... .......... .......... .......... 7681 .......... .......... .......... .......... .......... .......... 7741 .......... .......... .......... .......... .......... .......... 7801 .......... .......... .......... .......... .......... .......... 7861 .......... .......... .......... .......... .......... .......... 7921 .......... .......... .......... .......... .......... .......... 7981 .......... .......... .......... .......... .......... .......... 8041 .......... .......... .......... .......... .......... .......... 8101 .......... .......... .......... .......... .......... .......... 8161 .......... .......... .......... .......... .......... .......... 8221 .......... .......... .......... .......... .......... .......... 8281 .......... .......... .......... .......... .......... .......... 8341 .......... .......... .......... .......... .......... .......... 8401 .......... .......... .......... .......... .......... .......... 8461 .......... .......... .......... .......... .......... .......... 8521 .......... .......... .......... .......... .......... .......... 8581 .......... .......... .......... .......... .......... .......... 8641 .......... .......... .......... .......... .......... .......... 8701 .......... .......... .......... .......... .......... .......... 8761 .......... .......... .......... .......... .......... .......... 8821 .......... .......... .......... .......... .......... .......... 8881 .......... .......... .......... .......... .......... .......... 8941 .......... .......... .......... .......... .......... .......... 9001 .......... .......... .......... .......... .......... .......... 9061 .......... .......... .......... .......... .......... .......... 9121 .......... .......... .......... .......... .......... .......... 9181 .......... .......... .......... .......... .......... .......... 9241 .......... .......... .......... .......... .......... .......... 9301 .......... .......... .......... .......... .......... .......... 9361 .......... .......... .......... .......... .......... .......... 9421 .......... .......... .......... .......... .......... .......... 9481 .......... .......... .......... .......... .......... .......... 9541 .......... .......... .......... .......... .......... .......... 9601 .......... .......... .......... .......... .......... .......... 9661 .......... .......... .......... .......... .......... .......... 9721 .......... .......... .......... .......... .......... .......... 9781 .......... .......... .......... .......... .......... .......... 9841 .......... .......... .......... .......... .......... .......... 9901 .......... .......... .......... .......... .......... .......... 9961 .......... .......... .......... .......... .......... .......... 10021 .......... .......... .......... .......... .......... .......... 10081 .......... .......... .......... .......... .......... .......... 10141 .......... .......... .......... .......... .......... .......... 10201 .......... .......... .......... .......... .......... .......... 10261 .......... .......... .......... .......... .......... .......... 10321 .......... .......... .......... .......... .......... .......... 10381 .......... .......... .......... .......... .......... .......... 10441 .......... .......... .......... .......... .......... .......... 10501 .......... .......... .......... .......... .......... .......... 10561 .......... .......... .......... .......... .......... .......... 10621 .......... .......... .......... .......... .......... .......... 10681 .......... .......... .......... .......... .......... .......... 10741 .......... .......... .......... ||||| // LOCUS mt.A.caste 10775 bp RNA RNA 11-JAN-191 DEFINITION Mitochondria Acanthamoeba castellanii. ACCESSION No information KEYWORDS No information. SOURCE Mitochondria Acanthamoeba castellanii. ORGANISM Mitochondria Acanthamoeba castellanii. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 10775) Corresponding GenBank entry: U03732 LOCUS ACU03732 7778 bp DNA INV 01-JUN-1994 DEFINITION Acanthamoeba castellanii Neff mitochondrion rRNA large subunit gene. ACCESSION U03732 KEYWORDS . SOURCE amoeba ORGANISM Mitochondrion Acanthamoeba castellanii Eucaryotae; Protozoa; Sarcomastigophora; Sarcodina; Rhizopoda; Lobosa; Amoebida; Acanthamoeba. REFERENCE 1 (bases 1 to 7778) AUTHORS Lonergan,K.M. and Gray,M.W. TITLE The ribosomal RNA gene region in Acanthamoeba castellanii mitochondrial DNA JOURNAL Unpublished STANDARD full automatic REFERENCE 2 (bases 44 to 462) AUTHORS Lonergan,K.M. and Gray,M.W. TITLE Predicted editing of additional transfer RNAs in Acanthamoeba castellanii mitochondria JOURNAL Nucleic Acids Res. 21, 4402-4402 (1993) STANDARD full automatic REFERENCE 3 (bases 5550 to 6183) AUTHORS Lonergan,K.M. and Gray,M.W. TITLE Editing of transfer RNAs in Acanthamoeba castellanii mitochondria JOURNAL Science 259, 812-816 (1993) STANDARD full automatic REFERENCE 4 (bases 1 to 7778) AUTHORS Lonergan,K.M. TITLE Direct Submission JOURNAL Submitted (24-NOV-1993) Kim M Lonergan, Biochemistry, Dalhousie University, Sir Charles Tupper Medical Building, Halifax, Nova Scotia, B3H 4H7, Canada STANDARD full automatic COMMENT NCBI gi: 495327 FEATURES Location/Qualifiers tRNA 44..462 /citation=[2] /note="tRNA gene cluster 1; GenBank Accession Number L20506" rRNA join(463..2232,2988..3007,3868..4500,5254..5549) /product="ribosomal RNA large subunit" /citation=[1] exon 463..2232 /number=1 intron 2233..2987 /number=1 exon 2988..3007 /number=2 intron 3008..3867 /number=2 exon 3868..4500 /number=3 intron 4501..5253 /number=3 exon 5254..5549 /number=4 tRNA 5583..6118 /citation=[3] /note="tRNA gene cluster 2" misc_feature 5550..6183 /note="GenBank Accession Number M97651" rRNA 6184..7724 /product="ribosomal RNA small subunit" /citation=[1] source 1..7778 /clone_lib="ATCC 30010" /strain="Neff" /organism="Acanthamoeba castellanii" /mitochondrion CDS 2438..2866 /note="rRNA large subunit intron 1 orf; NCBI gi: 495328." /codon_start=1 /translation="MKIDKNWIVGFVDGEGCFYIGINKSVDSKLGYQVLPEFRVVQHK RDIKVLYAIKDFFGHGSVVCNKSNGSEIYEYRVRKFETLHDVILPFFESNGLLTSKKF NFLAFRDVILIMKRREHLTESGLSKIIDIKSRMNRSSIHY" CDS 3275..3781 /note="rRNA large subunit intron 2 orf; NCBI gi: 495329." /codon_start=1 /translation="MKNLDLKQEKALIDPFWISGFVDGEGCFCISFNLKERLTLGIEV RPSFSISQTRDKEGLNLRCLQDFLNFFDCGFIRFSKRDNTWKYECRDLSDIRSKVLPH FEKFTLRTKKLRDFELFKDVVNSVASKQHLNEVGLKRIIDISYQINMGKRKLTKDELL SKINLKNL" CDS 4633..5127 /note="rRNA large subunit intron 3 orf; NCBI gi: 495330." /codon_start=1 /translation="MQKNQFKKLNNEQLAYLAGFVEADGCFLVQIIPGLQYRYKHTIR ISIVFYQKKDKHWYFLQLKNLIGLGSIRFRNDGMLEYSITGLSLVNKFLEMLFPYLIL KKNLAVLIFRIIKGLNDVKNEAGFLEVCKLVDEVADHTYSKKRKNTSLTVKNSLLLPV ETEE" BASE COUNT 2621 a 1062 c 1582 g 2513 t ORIGIN BASE COUNT 948 a 355 c 566 g 850 t 8056 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~uu 181 gauuauaaau acaaauaa-g uaauuauaua aaaau----- ---------- ---------- 241 ---------- ---------- ---------- -----UAAAG GGUAAAUAA- ----CGAAUA 301 |UCUuaUAG| CAU-AAAA-G U|uu------ ---------- -----cugg| -cgcc(-uaa 361 ucg------) a|gcg-aaa- uauacaa|ug --agu--(-- ---------- --------cg 421 aaaaauu)-- acuuaga--a uuguaaa-uu ccag--c-AG A--------- -----(GAAA 481 )UCU|----- ---------- ---------- -aaca----- ---------u uuaaau-au- 541 ---------- -----uguu- ---<------ ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- ---------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 ---------- ---------- ---------- ---------- ---------- ---------- 781 ---------- ---------- ---------- -------->- -----cUUAC |CUAAUUAAG 841 UGA(AACA)U CUCAAUA--- -GUUAG---- ---------- ---------- ---AGGAAAG 901 GAAAAU(-AA UU)AAAG-AU |UUU-GUUA- -GUAA-U(-G GUGA)GUGAA -AACAAAAU- 961 -AGCCAA<-- ---------- ---------- ---------- ---------- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- --->------ 1201 ---------a auuugaauuu aaggaaauag aagucuuau< ---------- ---------- 1261 ---------- ---------- ---------> (augau-)uu aagc------ GC-|C(AUA) 1321 G--AAGG(UG AAAGC)CCUu ua--uaauuu cuuauuuuua auauauauaa u-auGAGUAAA AUAAAA(--- --------uc 1561 ugugaaa)UU UUAUUGGAAA ----aaGGCA A(ACCCA-U) -UUGCUA--A GGCUaaauac 1621 ---AC-UUUU A-UGACUAAU AGUG-AA--- -CAAGUACU( -GUGA-)AGG ---AAA-GA- 1681 UG-------- ---------- ---------- ---------- ---------- ---------- 1741 AAAAG--ac- -(--aaa--) --gu------ ---------- ---------- --uaAAAGA- 1801 UCUUG-AAAU UGUU-UAC-C U-<------- ---------- ---------- ---------- 1861 ----->-uaa ggaucuagag cgca----<- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------> (----gcgaa 2041 --)----ugu guuauagg-G UGCCUU(UU- GCAUA)AUGA |GCG-GGCGA UU-----UCU 2101 AAGGAACUAG CAA--acuau g-guc--(-- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- -------guu a)----gaug --aagg-uGA 2521 AGU-(-GAAA )--GCG<--- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ----->-agc uu(uaauu-) aa-gcg---- -----uuAAG UUAGU-UUUU 2701 UGA-GACUCG AU-ACUAA-G CG-AUCUAUU UAC-UGC-CA GAUUGAA--- A-GU--AC-U 2761 U(-------- ---------- ---------- ---------- -----uaac) ACGUACUGAA 2821 GGAUCGAA-C CC-AUGUAU( GUUGCAU-A) AUAC-CGGGA --UGAGUGG- UAGCUAG-GG 2881 GU(G-AAAG) GCU-AAUC-A A-GCUUAGUG UUAGCU-AGU ACUCU--ACG AA-AUC-UAU 2941 (-UUAG)GUA GA-GC-GUUC UGUU------ ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- --------ca cau|-UAUUG 3061 U|UGGUAG|A GCUCUAG-gu aa-gca--au gggaa---(u uaauac--)< ---------- 3121 ---------- ---------- ---------- ---------- ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---->---uu cua-cu-gag 3301 uuu--ac-UU AAACUGCG-- AAUA|-GCAA -U-A--aauu ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- -uuuuuAC-A -GAGC-AGGC AGAUU--GC- GG-GC(-GCG 3481 AAG)GUUCGU AA-UC----G AAAGGG(AAA -CAG)CCC-A GAAUA-U-CA -GC-UAA--- 3541 --AGU-CCAU -AAA-AA-U- AAUUAAGUG- ---------- uaugaAAUA- AUCUAAAGUG 3601 uua------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- uaaca-AUUA G<-------- ---------- ---------- 3721 ---------- ---------- ---------- ---------- -->GAGGU-U GGC(UUAGAA 3781 GC-A)-GCCA -UCCU|U(U- AA)A|GAAAG C(--GUAACA )GC|-UCAC- UAAUuuGCA-UU-A -UA-GGG|-U UUuaugau-- ---------- ---------- -----auaac 3961 ggacu----- ---------- ---------- ---------- ---------- ---------- 4021 ---------- ---aaAAUUA UUU------- ---------- ---------- ---------- 4081 -------|AC UGAA--GCU| A--U-AU|G- ---------- ---------- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- ---------- ---------- ---------- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- --------(u 4441 aaau--)--- ---------- -C-----GGU AGUAG-AG|- UA-UCUUAUA U---uuuau- 4501 ---------A GAUAA-AUUU (GUGA---)< ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ------->GA AUU--UAU-U A|-auau--| AUUAAGAGAA AGUAUGC-CU 4681 GU|AUGAGUA -GCA---AA- GAA-UA-GU- (gagaa---- ---------- ---------- 4741 ---------- -----)-A-C UAUUC-|CAC C-GUAU-AUA UAA--GGUUU -|----CCUA 4801 UUuaua--AA ---------- ----(--UUU AU)U-U|-UA AUAGGG---- ---------- 4861 ---UUAAU-- -CGGCCCCUA A-G-U-Uu-- uauAAU-(-G ACA------- ------)<-- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 >--auu---a ua---G-GCG AU-GGGUUU- UGGG(----- ---------- ---------- 5041 ---------- --uuaaaauu ----)CUCAA |---AU|uuu u--caguaag |ug<------ 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ---------- ---------- 5221 ---------- ---------- ---------- ---------- ---------- ---------- 5281 ---------- ---------- ---------- ---------- ---------- ---------- 5341 ---------- ---------- ---------- ---------- ---------- ---------- 5401 ---------- ---------- ------->-a caaaggg-gg cagguuauuu aau------u 5461 uuaau(aaaa uua---)auu aag|------ --------|- ---------- -(-----)-- 5521 |--------- ---------- ---------- ---------- ---------- --uaaucagg 5581 a-<------- ---------- ---------- ---------- ---------- ---------- 5641 ---------- ---------- ------->cc uuuccggaaa ----aa-gcu uug<------ 5701 ---------- ---------- ---------- ---------- ---------- ---------- 5761 ---------- ---------- ---------- ---------- ---------- ---------- 5821 ---------- ---------- ---------- ---------- ---------- ---------- 5881 ---------- ---------- ---------- ---------- ---------- ---------- 5941 ---------- ---------- ---------- ---------- ---------- ---------- 6001 ---------- ---------- ---------- ---------- ---------- ---------- 6061 ---------- ---------- ---------- ---------- ---------- ---------- 6121 ---------- ---------- ---------- ---------- ---------- ---------- 6181 ---------- ---------- ---------- ---------- ---------- ---------- 6241 ---------- ---------- ---------- ---------- ---------- ---------- 6301 ---------- ---------- ---------- ---------- ---------- ---------- 6361 ---------- ---------- ---------- ---------- ---------- ---------- 6421 ---------- ---------- ------>--- ------aaaa uaaaaa---- -ACCGUA|CU 6481 ---UAAAUC- -(GGCUCC)G A|UAUUU-UG AUA-(GAG-U A-----)-UA UUAAGGUG-| 6541 |--AUAGG-A U--AAUAAUA -UUGA-AGGA ACUCGGCAAA AUAGCU-CCG UAAC(UUCG- 6601 )GGAGAA-GG AGU|accuuu uguaa----- -----(gcaa ---)<----- ---------- 6661 ---------- ---------- ---------- ---------- ---------- ---------- 6721 ---------- ---------- ---------- ---------- ---------- -uuacuuaua 6781 -ggu|G(UAA )C--AGAAUA GAGGGUAG|C GA---CUG-U UU(ACUAA)A AA-CACA-GG 6841 ACUCCG|CU- -AAGUU---- ---------- (--GUAA--- ------)--- ---------- 6901 AACGAUGUA- UAG-GGUCUG ACACCU<--- ---------- ---------- ---------- 6961 ---------- ---------- -------->G CC-CG-GU|G CUGAAA-GAU aaaaag-gau 7021 --UGGUA--- --(------- ---------- ---------- ---------- ---------- 7081 ---------- ---------- ---------g gaa)-----U GCCA-ugaau a-UAAAUC-| 7141 UC-AGUA-AA C-|GG-C|-G -GCUGU-(AA CCAUA)ACGG UC|C(UAA)- GG-UAGCGAA 7201 AUU-CC-U-U |GUCGGG(-U GAGU-)UCCG AC|CU-GCAU GAAUGGUGUA A-CGACUUCC 7261 CU-------- ---------- -------ACU GUCUCCAGUA UUAA-CC-UA ----GUGAAA 7321 UU|A|AACUU GC-UG(U-GA AGAUG)CAGU AUA----UAA AUGAUUGGAC GGAAAG-ACC 7381 CUGUAC-|-A CCUUU--ACU AU|--A-AUC AUA--GAUU| <--------- ---------- 7441 ---------- ---------- --->GUUUU- UA-----AAA -uauugaaua UGU---AGGA 7501 UAAACAGcaa -GCUu---au u-auacuuua au<------- ---------- ---------- 7561 ---------- ---------- ---------- ---------- ---------- ---------- 7621 ---------- ---------- ---------> --(----gcu a)guuaau-u guu--uaGGC 7681 AAUAGUGAAA UACUGUU|-- -----uuuu- uaa-U-UUUU AAAA-Cuaa- -cuaa----- 7741 -----(---a uu--)----- ---------- ---------- ---------- ----uuag<- 7801 ---------- ---------- ---------- ---------- ---------- ---------- 7861 ---------- ---------- ---------- ---------- ---------- ---------- 7921 ---------- ---------- ---------- ---------- ---------- ---------- 7981 ---------- ---------- ---------- ---------- ---------- ---------- 8041 ---------- ---------- ---------- ---------- ---------- ---------- 8101 ---------- ---------- ----->-GAU AGUUU-A-UG -ACU-GG-UA GUUUGACUG( 8161 GGG)UG-GU- C|GCCUUC(- --------UA AAUAGUAAC- )GAAG-GC|G |U|GCAA-|< 8221 ---------- ---------- ---------- ---------- ---------- ---------- 8281 ---------- ---------- ---------- ---------- ---------- ---------- 8341 ---------- ---------- ---------- ---------- ---------- ->augg-uaa 8401 -ua|--au-- aauuaa<--- ---------- ---------- ---------- ---------- 8461 ---------- ---------- ---------- ---------- ---------- ---------- 8521 ---------- ---------- ---------- ---------- ---------- ---------- 8581 ---------- ---------- ---------- ---------- ---------- ---------- 8641 ---------- ---------> (uuaaaaa-- )----uuaau uu-------- ---------- 8701 ---------- ---------- ---------- ---gaaa|AU (U|UAAUG)G Uaa-aag-au 8761 u-gc-UUGAC UGAGUAGAu( -cgacag--- )aUCGAGUCA G--------- ---------- 8821 ---------- --------AG AC-------- ---(GAAA-- -)-------- ----GUC-GG 8881 C|---CAUAG UGAUC-CAAU AG-U------ ---------- GCU(------ ---------- 8941 ---------- ---------- ---------- ---------- ----GAAUGG AA)GG|GCUA 9001 UUGCUUAAC- |GGAUAAAAG GUACGU|CAG G|GAUAACAG |G-CUA-A-U GGGCCCUAAG 9061 AG(U--CCUU )AUCGACGGG --CUUGUUUG GU-ACCUCGA UGUC|GA--C U|C|AUCAC| 9121 AU-CC-UGGA GC-UG(--CA -GG)CGGUUC CAAG-GGU|U AGGC(UGUUC )GCCUA-UUA 9181 A--AGUGGU- --ACGUGAGU UGGGUUUAGA AC|GU+C(GU GA)GACAGUU CGGUUCCUAU 9241 CU|GUCAU-U UU|G|<---- ---------- ---------- ---------- ---------- 9301 >--uaa-aaa c--uaa-AAA AAU-GUU-UC UU--(UUGU- AC(-GAGA)G GAUU-)GAGA 9361 A--AU-<--- ---------- ---------- -------->G UAUACCA-CU GGUAAAUCGA 9421 U|-UGU-ACU (guca-)<-- ---------- ---------- ---------- ---------- 9481 ---------- ---------- ---------- ---------- ---------- ---------> 9541 aag-gcaUUG UCGA--GUAG CUAC-GUAUA Aau------- ---------- -------uuu 9601 ---------- -AUAAUUGCU (GAUAGC--G U-AUA)A-GC -AA-GAAAAU GAuuuuu--- 9661 ---au--g-- -uuuuu-<-- ---------- ---------- ---------- ---------- 9721 ---------- ---------- ---------- ---------- ---------- ---------- 9781 ---------- ---------- ---------- ---------- ---------- ---------- 9841 ---------- ---------- ---------- ---------- ---------- ---------- 9901 ---------- ---------- ------>--| ---------- ---------- -uuaaac|GG 9961 UUG(UAGAUA A--)UAACUU U--------- ---------- ---------- -----uUAUA 10021 G|GCGCGAAA ---------- ---------- ---------- ---------- ---------- 10081 ---------- ---uua-aAU UUG------- ---------- --------(- ---------- 10141 ---------- -------GUA A)CGAAU--- ---------- ---------- ---------- 10201 ------ggUU U|A|CGCGUA CUAau----- ---------- ---------- -----uauua 10261 a--------- ---------- ---------- ------auuu uuuauauaug auuu|uuuug 10321 caauuu--|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ||||| // LOCUS (3)-ALVEOL 10775 bp RNA RNA 09-JAN-1999 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 10775) Corresponding GenBank entry: DIVIDER BASE COUNT 0 a 0 c 0 g 0 t 10775 others ORIGIN 1 |......... .......... .......... .......... .......... .......... 61 .......... .......... .......... .......... .......... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......... .......... .......... .......... 241 .......... .......... .......... .......... .......... .......... 301 .......... .......... .......... .......... .......... .......... 361 .......... .......... .......... .......... .......... .......... 421 .......... .......... .......... .......... .......... .......... 481 .......... .......... .......... .......... .......... .......... 541 .......... .......... .......... .......... .......... .......... 601 .......... .......... .......... .......... .......... .......... 661 .......... .......... .......... .......... .......... .......... 721 .......... .......... .......... .......... .......... .......... 781 .......... .......... .......... .......... .......... .......... 841 .......... .......... .......... .......... .......... .......... 901 .......... .......... .......... .......... .......... .......... 961 .......... .......... .......... .......... .......... .......... 1021 .......... .......... .......... .......... .......... .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .......... .......... .......... .......... .......... 1201 .......... .......... .......... .......... .......... .......... 1261 .......... .......... .......... .......... .......... .......... 1321 .......... .......... .......... .......... .......... .......... 1381 .......... .......... .......... .......... .......... .......... 1441 .......... .......... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... .......... .......... .......... .......... .......... 1621 .......... .......... .......... .......... .......... .......... 1681 .......... .......... .......... .......... .......... .......... 1741 .......... .......... .......... .......... .......... .......... 1801 .......... .......... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .......... .......... 1921 .......... .......... .......... .......... .......... .......... 1981 .......... .......... .......... .......... .......... .......... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... .......... .......... .......... .......... .......... 2161 .......... .......... .......... .......... .......... .......... 2221 .......... .......... .......... .......... .......... .......... 2281 .......... .......... .......... .......... .......... .......... 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... .......... 2701 .......... .......... .......... .......... .......... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... .......... 2881 .......... .......... .......... .......... .......... .......... 2941 .......... .......... .......... .......... .......... .......... 3001 .......... .......... .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .......... .......... 3181 .......... .......... .......... .......... .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .......... .......... .......... 3361 .......... .......... .......... .......... .......... .......... 3421 .......... .......... .......... .......... .......... .......... 3481 .......... .......... .......... .......... .......... .......... 3541 .......... .......... .......... .......... .......... .......... 3601 .......... .......... .......... .......... .......... .......... 3661 .......... .......... .......... .......... .......... .......... 3721 .......... .......... .......... .......... .......... .......... 3781 .....-.... .......... .......... .......... .......... .......... 3841 .......... .......... .......... .......... .......... .......... 3901 .......... .......... .......... .......... .......... .......... 3961 .......... .......... .......... .......... .......... .......... 4021 .......... .......... .......... .......... .......... .......... 4081 .......... .......... .......... .......... .......... .......... 4141 .......... .......... .......... .......... .......... .......... 4201 .......... .......... .......... .......... .......... .......... 4261 .......... .......... .......... .......... .......... .......... 4321 .......... .......... .......... .......... .......... .......... 4381 .......... .......... .......... .......... .......... .......... 4441 .......... .......... .......... .......... .......... .......... 4501 .......... .......... .......... .......... .......... .......... 4561 .......... .......... .......... .......... .......... .......... 4621 .......... .......... .......... .......... .......... .......... 4681 .......... .......... .......... .......... .......... .......... 4741 .......... .......... .......... .......... .......... .......... 4801 .......... .......... .......... ..)....... .......... .......... 4861 .......... .......... .......... .......... .......... .......... 4921 .......... .......... .......... .......... .......... .......... 4981 .......... .......... .......... .......... .......... .......... 5041 .......... .......... .......... .......... .......... .......... 5101 .......... .......... .......... .......... .......... .......... 5161 .......... .......... .......... .......... .......... .......... 5221 .......... .......... .......... .......... .......... .......... 5281 .......... .......... .......... .......... .......... .......... 5341 .......... .......... .......... .......... .......... .......... 5401 .......... .......... .......... .......... .......... .......... 5461 .......... .......... .......... .......... .......... .......... 5521 .......... .......... .......... .......... .......... .......... 5581 .......... .......... .......... .......... .......... .......... 5641 .......... .......... .......... .......... .......... .......... 5701 .......... .......... .......... .......... .......... .......... 5761 .......... .......... .......... .......... .......... .......... 5821 .......... .......... .......... .......... .......... .......... 5881 .......... .......... .......... .......... .......... .......... 5941 .......... .......... .......... .......... .......... .......... 6001 .......... .......... .......... .......... .......... .......... 6061 .......... .......... .......... .......... .......... .......... 6121 .......... .......... .......... .......... .......... .......... 6181 .......... .......... .......... .......... .......... .......... 6241 .......... .......... .......... .......... .......... .......... 6301 .......... .......... .......... .......... .......... .......... 6361 .......... .......... .......... .......... .......... .......... 6421 .......... .......... .......... .......... .......... .......... 6481 .......... .......... .......... .......... .......... .......... 6541 .......... .......... .......... .......... .......... .......... 6601 .......... .......... .......... .......... .......... .......... 6661 .......... .......... .......... .......... .......... .......... 6721 .......... .......... .......... .......... .......... .......... 6781 .......... .......... .......... .......... .......... .......... 6841 .......... .......... .......... .......... .......... .......... 6901 .......... .......... .......... .......... .......... .......... 6961 .......... .......... .......... .......... .......... .......... 7021 .......... .......... .......... .......... .......... .......... 7081 .......... .......... .......... .......... .......... .......... 7141 .......... .......... .......... .......... .......... .......... 7201 .......... .......... .......... .......... .......... .......... 7261 .......... .......... .......... .......... .......... .......... 7321 .......... .......... .......... .......... .......... .......... 7381 .......... .......... .......... .......... .......... .......... 7441 .......... .......... .......... .......... .......... .......... 7501 .......... .......... .......... .......... .......... .......... 7561 .......... .......... .......... .......... .......... .......... 7621 .......... .......... .......... .......... .......... .......... 7681 .......... .......... .......... .......... .......... .......... 7741 .......... .......... .......... .......... .......... .......... 7801 .......... .......... .......... .......... .......... .......... 7861 .......... .......... .......... .......... .......... .......... 7921 .......... .......... .......... .......... .......... .......... 7981 .......... .......... .......... .......... .......... .......... 8041 .......... .......... .......... .......... .......... .......... 8101 .......... .......... .......... .......... .......... .......... 8161 .......... .......... .......... .......... .......... .......... 8221 .......... .......... .......... .......... .......... .......... 8281 .......... .......... .......... .......... .......... .......... 8341 .......... .......... .......... .......... .......... .......... 8401 .......... .......... .......... .......... .......... .......... 8461 .......... .......... .......... .......... .......... .......... 8521 .......... .......... .......... .......... .......... .......... 8581 .......... .......... .......... .......... .......... .......... 8641 .......... .......... .......... .......... .......... .......... 8701 .......... .......... .......... .......... .......... .......... 8761 .......... .......... .......... .......... .......... .......... 8821 .......... .......... .......... .......... .......... .......... 8881 .......... .......... .......... .......... .......... .......... 8941 .......... .......... .......... .......... .......... .......... 9001 .......... .......... .......... .......... .......... .......... 9061 .......... .......... .......... .......... .......... .......... 9121 .......... .......... .......... .......... .......... .......... 9181 .......... .......... .......... .......... .......... .......... 9241 .......... .......... .......... .......... .......... .......... 9301 .......... .......... .......... .......... .......... .......... 9361 .......... .......... .......... .......... .......... .......... 9421 .......... .......... .......... .......... .......... .......... 9481 .......... .......... .......... .......... .......... .......... 9541 .......... .......... .......... .......... .......... .......... 9601 .......... .......... .......... .......... .......... .......... 9661 .......... .......... .......... .......... .......... .......... 9721 .......... .......... .......... .......... .......... .......... 9781 .......... .......... .......... .......... .......... .......... 9841 .......... .......... .......... .......... .......... .......... 9901 .......... .......... .......... .......... .......... .......... 9961 .......... .......... .......... .......... .......... .......... 10021 .......... .......... .......... .......... .......... .......... 10081 .......... .......... .......... .......... .......... .......... 10141 .......... .......... .......... .......... .......... .......... 10201 .......... .......... .......... .......... .......... .......... 10261 .......... .......... .......... .......... .......... .......... 10321 .......... .......... .......... .......... .......... .......... 10381 .......... .......... .......... .......... .......... .......... 10441 .......... .......... .......... .......... .......... .......... 10501 .......... .......... .......... .......... .......... .......... 10561 .......... .......... .......... .......... .......... .......... 10621 .......... .......... .......... .......... .......... .......... 10681 .......... .......... .......... .......... .......... .......... 10741 .......... .......... .......... ||||| // LOCUS mt.P.aurel 10775 bp RNA RNA 25-JUL-1994 DEFINITION Mitochondria Paramecium aurelia.; 5.8S ribosomal RNA; apocytochrome; apocytochrome b; atp 9 gene; ATP synthetase; cytb gene; cytochrome c oxidase; cytochrome c oxidase subunit I; cytochrome c oxidase subunit II; dehydrogenase; dicyclohexylcarbodiimide-binding protein; NADH dehydrogenase; ND1 protein; ND2 protein; ND3 protein; ND4 protein; ND5 protein; ndh1 gene; ndh2 gene; ndh3 gene; ndh4 gene; ndh5gene; oxidase; P1 gene; P1 protein; psbG gene; ribosomal protein; ribosomal protein L14; ribosomal protein L2; ribosomal protein S12; ribosomal protein S14; ribosomal RNA; ribosomal RNA large subunit; ribosomal RNA small subunit; synthetase; transfer RNA; transfer RNA-Phe; transfer RNA-Trp; transfer RNA-Tyr. ACCESSION X15917 KEYWORDS 5.8S ribosomal RNA; apocytochrome; apocytochrome b; atp 9 gene; ATP synthetase; cytb gene; cytochrome c oxidase; cytochrome c oxidase subunit I; cytochrome c oxidase subunit II; dehydrogenase; dicyclohexylcarbodiimide-binding protein; NADH dehydrogenase; ND1 protein; ND2 protein; ND3 protein; ND4 protein; ND5 protein; ndh1 gene; ndh2 gene; ndh3 gene; ndh4 gene; ndh5gene; oxidase; P1 gene; P1 protein; psbG gene; ribosomal protein; ribosomal protein L14; ribosomal protein L2; ribosomal protein S12; ribosomal protein S14; ribosomal RNA; ribosomal RNA large subunit; ribosomal RNA small subunit; synthetase; transfer RNA; transfer RNA-Phe; transfer RNA-Trp; transfer RNA-Tyr. SOURCE Mitochondria Paramecium aurelia. ORGANISM Mitochondria Paramecium aurelia. REFERENCE 1 (bases 1 to 40469) AUTHORS Pritchard,A. TITLE Direct Submission JOURNAL Submitted (21-JUL-1989) to the EMBL/GenBank/DDBJ databases. Pritchard A., University of Colorado Health Science Centre, Department of Microbiology, Denver CO 80262, U S A STANDARD No information REFERENCE 2 (bases 1 to 40469) AUTHORS Pritchard,A.E., Seilhamer,J.J., Mahalingam,R., Sable,C.L., Venuti,S.E. and Cummings,D.J. TITLE Nucleotide sequence of the mitochondrial genome of Paramecium JOURNAL Nucleic Acids Res. 18 (1), 173-180 (1990) STANDARD No information REFERENCE 3 (bases 1 to 40469) AUTHORS Valverde,J.R., Marco,R. and Garesse,R. TITLE A conserved heptamer motif for ribosomal RNA transcription termination in animal mitochondria JOURNAL Proc. Natl. Acad. Sci. U.S.A. 91 (12), 5368-5371 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 10775) Corresponding GenBank entry: X15917 For overlapping sequences see accession numbers <K00904>, <M15275>, <M15220>, <K01751>, <K01749>, <X04157> and <M26930>. NCBI gi: 13256 BASE COUNT 870 a 395 c 563 g 830 t 8117 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~----- -----uuugc agucu----- ---------- ---------- 241 ---------- ---------- ---------- -----aacaA AGCACUAGA- ----CGGAUG 301 |CCU--AAA| AAUCUUGG-U U|gagggcgu aa-------- -----aucu| -aaau(--ac 361 gau------) a|uuuguau- gUAAGC-|UU --ucuuu(-- ---------- ---------- 421 ugauau-)au agaa-----U UGCUUA---- ggaugua-ca agggc----- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---<------ ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- ---------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 ---------- ---------- ---------- ---------- ---------- ---------- 781 ---------- ---------- ---------- -------->- ccuugaAAAU |UUUAUGAAG 841 CGA(AACA)U CGUAGUA--- -AUAAA---- ---------- -----uc--- ---uaaaaca 901 uAAUUC(-AA CU)GA-G-AU |GUU-AA-A- -GUAA-C(-G GUGA)GUGAA --acaaagu- 961 -AGCUCA<-- ---------- ---------- ---------- ---------- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- --->------ 1201 ---------- -aaaauuaga aaagagggcu gaauuacuu< ---------- ---------- 1261 ---------- ---------- ---------> (ggaa--)aa guaa------ GC-|U(ACA) 1321 G--UGGG(UG AUAGC)CCCg ua--agcuuu u--GAGUAUA UAUUAU(--- ---------- 1561 uaacaaa)AU AAUAUAGAAA ------uguu u(-uuca-a) -aaaaaa--A AGCUA--AUA 1621 ---AAACCAA A-UU-UUGAU AGAA-AA--- -UAAGUACC( -GUGA-)GGG ---AAA-GG- 1681 UG-------- ---------- ---------- ---------- ---------- ---------- 1741 AAAAGAAAUU U(-gua---) GAAU------ ---------- ---------g uuuaAAAGA- 1801 UUCUG-AAAU CUAG-UGC-A G-<------- ---------- ---------- ---------- 1861 ----->UGAA ACAGUUAAAG C-------<- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------> (----guguu 2041 --)------- GUUUUAAC-G UACCUU(UU- GUAUA)AUGG |GCC-AACUA GU-----UU- 2101 AUAAAAUUAG CGA--gc--- -------(-- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- -uuaucaaau c)-------- -----g-cGU 2521 AAU-(-GAAA )--AU----- --(------) ---------- ---------G UUAAU-UUUA 2701 UAA-GACCCG AA-GUCAA-G UG-AUCUAAU CAU-GGC-UA GGU------- ---------- 2761 -(-------- ---------- ---------- ---------- ----agaag) ---------- 2821 --AUCGAA-C CC-AUAAAU( GUUGCAA-A) AUUU-CGGGA --GAAGCUG- UGAUUAG-GG 2881 GU(G-AAAG) GCU-AAUC-A A-ACUUGACG AUAGCU-GGU UUUUC--GCG AA-AUC-UAU 2941 (-CUAC)GUA GA-GU-AUUU uuuU------ ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- --------uc UUU|-UGUGC 3061 G|GGGUAG|U GUAAUCU--u uu-cuu--aa gaaga---(u cuga----)< ---------- 3121 ---------- ---------- ---------- ---------- ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---->---uc uu--uu-uuc 3301 gug--a--AG AAUCUUCC-- AAUA|-CGCA -U-U---AAA ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- -au---aa-u -AAAUAAAAC GGACU--GA- GA-GU(-GCA 3481 AAG)AUUCUU GG-UC----G AGAGGG(AAA -CAG)CCC-A GACCG-U-AC -GA-UAA--- 3541 --AGU-GCAU -AAA-CA-A- UGCGAAGUA- ---------- -----aaag- aauuguuuuu 3601 aaa------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- aaaau-AUCG G<-------- ---------- ---------- 3721 ---------- ---------- ---------- ---------- -->GAGGU-A GGC(UUAGAA 3781 UC-A)-GCCA -GCCU|U(U- AA)A|GAAAG C(--GUAACA )GC|-UCAC- CAAUAGuaa-aa-a -ua-auu|-u uuaa------ ---------- ---------- ----auuaaa 3961 GCGCU----- ---------- ---------- ---------- ---------- ---------- 4021 ---------- ----AAGCAU UGU------- ---------- ---------- ---------- 4081 -------|AC UGAA--GCG| G--C-GG|G- ---------- ---------- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- ---------- ---------- ---------- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- --------(u 4441 aacu--)--- ---------- -C-----GGU AGCGA-AA|- CG-UUUUGUA G---GUUGUU 4501 G--------A AGGUU-UAUU (GAGA---)< ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ------->AA UAG--GCU-G G|AGAU---| AUCAAAAUUG AUAAUGU-UG 4681 GC|AUGAGUA -AUA--GAC- AAA-AU-GU- (ucaaa---- ---------- ---------- 4741 ---------- -----)-U-C AUUUU-|UGU U-UGAU-AAG UUA--GGGUU -|----GCUU 4801 UGUUUu--GA ---------- ----(--UCA UC)U-U|-AC AAAGUG---- ---------- 4861 ---UGAUC-- -CGGUCUCUA A-U-U-U--- uuuAAAU(-a gau------- ------)<-- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 >-auuu---- uu---A-AAG AU-GAGCU-- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ------|--- ---------- |--------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ---------- ---------- 5221 ---------- ---------- ---------- ---------- ---------- ---------- 5281 ---------- ---------- ---------- ---------- ---------- ---------- 5341 ---------- ---------- ---------- ---------- ---------- ---------- 5401 ---------- ---------- ---------- ---------- ---------- ---------- 5461 ---------- ---------- ---|------ ---------- ---------- ---------- 5521 |--------- ---------- ---------- ---------- ---------- ---------- 5581 --<------- ---------- ---------- ---------- ---------- ---------- 5641 ---------- ---------- ------->-- ---------- ---------- ------ ---------- ---------- -ACCGUA|CU 6481 ---AACACU- -(AACGCA)A G|UACUU-UA GUC-(GAG-C A-----)-GA UGACGACAA| 6541 |--AAGAG-C U--AAUGAUA -UUGA-AGGA ACUCGGCAAA AUUACU-UUG UAAC(UUCG- 6601 )GGAUAA-AA AGU|gc---- ---------- -----(guca ---)<----- ---------- 6661 ---------- ---------- ---------- ---------- ---------- ---------- 6721 ---------- ---------- ---------- ---------- ---------- ---------- 6781 --gc|a(aac )aaaaaaaug GGGGGUAG|C GA---CUG-U UU(ACUAA)A AA-CAUA-AG 6841 AUUUUG|CA- -AAAUU---- ---------- (--uaau--- ------)--- ---------- 6901 UAUGAUGUA- UAA-AAUCUG ACUCCU<--- ---------- ---------- ---------- 6961 ---------- ---------- -------->G CC-CG-GU|G UUGUCA-UGC AAAGUU-UU- 7021 --AACGGu-- --(------- ---------- ---------- ---------- ---------- 7081 ---------- ---------- ---------u agc)----gC UGUU--GAUA A-CAAGCA-| 7141 GC-AAUA-AA C-|GG-C|-G -GCCAU-(AA CUCUG)AUGG UC|C(UAA)- GG-UAGCAAA 7201 AUC-CC-U-U |GACGGG(-U AAGU-)UCCG UC|CU-GCAC GAAUGGAGUA A-CGACUGCC 7261 CU-------- ---------- -------ACU GUCUCCAAUA UCAG-CU-CU ----AUGAAA 7321 UU|G|AAUUU GC-UG(U-GA AGAUG)CAGC UU-----UUU ACAACUAGAC GGAAAG-ACC 7381 CUAUGC-|-A CCUUU--ACU GA|--U-GCU AGG--AACU| <--------- ---------- 7441 ---------- ---------- --->AAAGG- GA-----UAU -Acuggaga- ua----aauU 7501 AAGGUAGGA- -gu------- ---------- --<------- ---------- ---------- 7561 ---------- ---------- ---------- ---------- ---------- ---------- 7621 ---------- ---------- ---------> --(----uaa a)-------- --------uc 7681 gcAAUUGAAA AACUACU|u- ----cucuu- u-U-A-CGUC UCUU-Cau-- ---------- 7741 -----(---- ----)----- ---------- ---------- ---------- --------uuua cuUUU-C-UG -GCU-GU-UA GUUUAACUG( 8161 GGG)CG-GU- U|GCCUCC(- --------UA AAAAGUAAC- )GGAG-GU|G |A|GCAU-|< 8221 ---------- ---------- ---------- ---------- ---------- ---------- 8281 ---------- ---------- ---------- ---------- ---------- ---------- 8341 ---------- ---------- ---------- ---------- ---------- ->A-AAgUUA 8401 -CG|--CU-- uuguga (auuuu---- )ucuuugcaa aa-------- ---------- 8701 ---------- ---------- ---------- ---ugAG|uu (-|-AAUA)a aac-uGC-GU 8761 A-AU-UUGAU UAAAU-UAC( -aaacua--- )GUAAU-UUA G--------- ---------- 8821 ---------- --------GG GC-------- ---(uaauu- -)-------- ----GCC-UG 8881 C|---UAUAA UGAUC-CGGU GU-U------ ---------- UUU(------ ---------- 8941 ---------- ---------- ---------- ---------- ----UUUUGA AU)AA|GACA 9001 UCGCUCAAC- |GAAUAAAAG GUACGC|UAG G|GAUAACAG |G-CUU-A-U AAAUUCUGAG 9061 AG(U--UCCU )AUUAAAGAA --UUUGUUUG GC-ACCUCGA UGUC|GG--C U|C|AUCAC| 9121 AU-CU-UGGU GG-UG(--CA -GA)AUCUGC CAAG-GGU|U UGGC(UGUUC )GCCAA-UUA 9181 A--AGUGGU- --ACGUGAGC UGGGUUUAAA AC|GU-U(GU GA)GACAGUU UGGUCCCUAU 9241 CU|GUUGU-A GA|A|<---- ---------- ---------- ---------- ---------- 9301 >UUAAG-AAA CG-AGG-CUG AGA-UCG-AC GC--(CAGU- AC(-GAGA)G GACC-)GACU 9361 A--GA-<--- ---------- ---------- -------->A CUAGCCU-CU GGUUCGGGAU 9421 C|-UAC-UUU (aaaua)<-- ---------- ---------- ---------- ---------- 9481 ---------- ---------- ---------- ---------- ---------- ---------> 9541 AAG-GUAUAG AUGC--UAUG CUAA-GCUGG Aua------- ---------- -------agc 9601 uaauuuuuua auuaaaauuu (uuuagc--u -uaaa)g-aa -uu-agaagc uuuUUAG--c 9661 aacUC--G-- -UUUCU-<-- ---------- ---------- ---------- ---------- 9721 ---------- ---------- ---------- ---------- ---------- ---------- 9781 ---------- ---------- ---------- ---------- ---------- ---------- 9841 ---------- ---------- ---------- ---------- ---------- ---------- 9901 ---------- ---------- ------>--| ---------- ---------a auaguau|UU 9961 UAG(AAGACU A--)CUAAGU U--------- ---------- ---------- ------aauu 10021 u|gaagguag ---------- ---------- ---------- ---------- ---------- 10081 ---------- ----cuguua uag------- ---------- --------(- ---------- 10141 --------gg cccuuaacgg g)c-gua--- ---------- ---------- ---------- 10201 ----ccagcu c|c|cc-uua aaaaa----- ---------- ---------- -----auacu 10261 a--------- ---------- ---------- -agacucuua uuauuauuau au-------- 10321 --------|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ||||| // LOCUS mt.P.prima 10775 bp RNA RNA ~?~???? DEFINITION mitochondria,Paramecium primaurelia 7S+20S. ACCESSION No information KEYWORDS No information. SOURCE mitochondria,Paramecium primaurelia 7S+20S. ORGANISM mitochondria,Paramecium primaurelia 7S+20S. REFERENCE 1 (bases 1 to 40469) AUTHORS No information JOURNAL 5173-5181 STANDARD No information COMMENTS Organism information Culture collection: ? Sequence information (bases 1 to 10775) Corresponding GenBank entry: K00634 Phylo:Mitochondria,Protozoan,Paramecium Updated sequence from M. Schnare's comments BASE COUNT 860 a 374 c 542 g 794 t 8205 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~----- -----uuuga agucu----- ---------- ---------- 241 ---------- ---------- ---------- -----aaccA AGCACUAGA- ----CGGAUG 301 |CCU--AAA| AAUCUUGG-U U|gagggcgu aa-------- -----auau| -aaau(--ac 361 gag------) a|uuuguau- gUAAGC-|UU --uuuuu(-- ---------- ---------- 421 ugauau-)au aaaa-----A UGCUUU---- ggaugug-ca acaac----- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---<------ ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- ---------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 ---------- ---------- ---------- ---------- ---------- ---------- 781 ---------- ---------- ---------- -------->- ccuuaaAAAU |UUUAUGAAG 841 CGA(AACA)U CGUAGUA--- -AUAAA---- ---------- -----uc--- ---uaaaaca 901 uAAAUC(-AA CU)GA-G-AU |GUU-AA-A- -GUAA-C(-G GUGA)GUGAA --acaaagu- 961 -AGCUCA<-- ---------- ---------- ---------- ---------- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- --->------ 1201 ---------- -aaaauuaaa agaaggggcu gaacuacuu< ---------- ---------- 1261 ---------- ---------- ---------> (ggaa--)aa guag------ GC-|U(ACA) 1321 G--AGGG(UG AUAGC)CCCg ua--agcuuu u--------- ---------- ---------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- ---GAGUAUA UAUUAU(--- ---------- 1561 uaacaaa)AU AAUAUGGAAA ------uguu u(-uuca-a) -aaaaaa--A AGCUA--AUA 1621 ---AAACCAA A-UU-UUGAU AGAA-AA--- -UAAGUACC( -GUGA-)GGG ---AAA-GG- 1681 UG-------- ---------- ---------- ---------- ---------- ---------- 1741 AAAAGAAAUU U(-gua---) GAAU------ ---------- ---------g cuuaAAAGA- 1801 UUCUG-AAAU CUAG-UGC-A G-<------- ---------- ---------- ---------- 1861 ----->UGAA ACAGUUAAAG C-------<- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------> (----guguu 2041 --)------- GUUUUAAC-G UACCUU(UU- GUAUA)AUGG |GCC-AACUA GU-----UU- 2101 AUAAAAUUAG CGA--gc--- -------(-- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- uuuaucaaau c)-------- -----g-cGU 2521 AAU-(-GAAA )--AU----- --(------) ---------- ---------G UUAAU-UUUA 2701 UAA-GACCCG AA-GUCAA-G UG-AUCUAAU CAU-GGC-UA GGU------- ---------- 2761 -(-------- ---------- ---------- ---------- ----agaag) ---------- 2821 --AUCGAA-C CC-AUAAAU( GUUGCAA-A) AUUU-CGGGA --GAAGCUG- UGAUUAG-GG 2881 GU(G-AAAG) GCU-AAUC-A A-ACUUGACG AUAGCU-GGU UUUUC--GCG AA-AUC-UAU 2941 (-CUAC)GUA GA-GU-AUUU uuuU------ ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- --------uc UUU|-UGUGC 3061 G|GGGUAG|U GUAAUCU--u uu-cuu--aa gaaga---(u cuga----)< ---------- 3121 ---------- ---------- ---------- ---------- ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---->---uc uu--uu-uuc 3301 gug--a--AG AAUCUUCC-- AAUA|-CGCA -U-U---AAA ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- -au---aa-u -AAAUAAAAC GGACU--GA- GA-GU(-GCA 3481 AAG)AUUCUU GG-UC----G AGAGGG(AAA -CAG)CCC-A GACCG-A-AC -GA-UAA--- 3541 --AGU-GCAU -AAA-CA-A- UGCGAAGUA- ---------- -----aaag- aauuuuuuuu 3601 aaa------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- aaaau-AUUG G<-------- ---------- ---------- 3721 ---------- ---------- ---------- ---------- -->GAGGU-A GGC(UUAGAA 3781 UC-A)-GCCA -GCCU|U(U- AA)A|GAAAG C(--GAAACA )GC|-UCAC- CAAUAGuaa-aa-a -ca-auu|-u uuaa------ ---------- ---------- ----auuaua 3961 GCGCU----- ---------- ---------- ---------- ---------- ---------- 4021 ---------- ----AAGCAU UGU------- ---------- ---------- ---------- 4081 -------|AC UGAA--GCG| G--C-GG|G- ---------- ---------- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- ---------- ---------- ---------- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- --------(u 4441 aacu--)--- ---------- -C-----GGU AGCGA-AA|- CG-UUUUGUA G---GUCGUU 4501 G--------A AGGUU-UAUU (GAAA---)< ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ------->AA UAG--GCU-G G|AGAU---| AUCAAAAUUG AUAAUGU-UG 4681 GC|AUGAGUA -AUG--GAC- AAA-AU-GU- (ucaaa---- ---------- ---------- 4741 ---------- -----)-U-C AUUUU-|UGU U-UGAU-AAG UUA--GGGUU -|----GCUU 4801 UGUUUu--GA ---------- ----(--UCA UC)U-U|-AC AAAGUG---- ---------- 4861 ---UGAUU-- -CGGCCUCUA A-U-U-U--- uuuAAAU(-a uaa------- ------)<-- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 >-auuu---- uu---A-AAG AU-GAGGU-- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ------|--- ---------- |--------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ---------- ---------- 5221 ---------- ---------- ---------- ---------- ---------- ---------- 5281 ---------- ---------- ---------- ---------- ---------- ---------- 5341 ---------- ---------- ---------- ---------- ---------- ---------- 5401 ---------- ---------- ---------- ---------- ---------- ---------- 5461 ---------- ---------- ---|------ ---------- ---------- ---------- 5521 |--------- ---------- ---------- ---------- ---------- ---------- 5581 --<------- ---------- ---------- ---------- ---------- ---------- 5641 ---------- ---------- ------->-- ---------- ---------- ------ ---------- ---------- -ACCGUA|CU 6481 ---AACACU- -(AACACA)A G|UACUU-UA GUC-(GAG-C A-----)-GA UGACGACAG| 6541 |--AAGAG-C U--AAUGAUA -UUGA-AGGA ACUCGGCAAA AUUACU-UUG UAAC(UUCG- 6601 )GGAUAA-AA AGU|gc---- ---------- -----(guca ---)<----- ---------- 6661 ---------- ---------- ---------- ---------- ---------- ---------- 6721 ---------- ---------- ---------- ---------- ---------- ---------- 6781 --gc|a(aac )aaaaaaaug GGGGGUAG|C GA---CUG-U UU(ACUAA)A AA-CAUA-AG 6841 AUUUUG|CA- -AAAUU---- ---------- (--uaau--- ------)--- ---------- 6901 UAUGAUGUA- UAA-AAUCUG ACUCCU<--- ---------- ---------- ---------- 6961 ---------- ---------- -------->G CC-CG-GU|G UUGUCA-UGC AAAGUU-UU- 7021 --AACGGu-- --(------- ---------- ---------- ---------- ---------- 7081 ---------- ---------- ---------u agc)----gC UGUU--GAUA A-CAAGCA-| 7141 GC-AAUA-AA C-|GG-C|-G -GCCAU-(AA CUCUG)AUGG UC|C(UAA)- GG-UAGCAAA 7201 AUC-CC-U-U |GACGGG(-U AAGU-)UCCG UC|CU-GCAC GAAUGGAGUA A-CGACUGCC 7261 CU-------- ---------- -------ACU GUCUCCAAUA UCAG-CU-CU ----AUGAAA 7321 UU|G|AAUUU GC-UG(U-GA AGAUG)CAGC UU-----UUU ACAACUAGAC GGAAAG-ACC 7381 CUAUGC-|-A CCUUU--ACU GA|--U-GCN AGG--AACU| <--------- ---------- 7441 ---------- ---------- --->AAAGA- GA-----UAU -Acuggaga- ua----aauU 7501 AAGGUAGGA- -gu------- ---------- --<------- ---------- ---------- 7561 ---------- ---------- ---------- ---------- ---------- ---------- 7621 ---------- ---------- ---------> --(----uaa a)-------- --------uc 7681 gcAAUUGAAA AACUACU|u- ----cucuu- u-U-A-CGUC UCUU-Cau-- ---------- 7741 -----(---- ----)----- ---------- ---------- ---------- --------uuua cuUUU-C-UG -GCU-GU-UA GUUUAACUG( 8161 GGG)CG-GU- U|GCCUCC(- --------UA AAAAGUAAC- )GGAG-GU|G |A|GCAU-|< 8221 ---------- ---------- ---------- ---------- ---------- ---------- 8281 ---------- ---------- ---------- ---------- ---------- ---------- 8341 ---------- ---------- ---------- ---------- ---------- ->A-AAgUUA 8401 -CG|--CU-- uuguga (auuuu---- )uuuucgcaa aa-------- ---------- 8701 ---------- ---------- ---------- ---ugAG|uu (-|-AAUA)a aac-uGC-GU 8761 A-AU-UUGAU UAAAU-UAC( -agacua--- )GUAAU-UUA G--------- ---------- 8821 ---------- --------GG GC-------- ---(uuauu- -)-------- ----GCC-UG 8881 C|---UAUAA UGAUC-CGGU GU-U------ ---------- UUU(------ ---------- 8941 ---------- ---------- ---------- ---------- ----UUUUGA AU)AA|GACA 9001 UCGCUCAAC- |GAAUAAAAG GUACGC|UAG G|GAUAACAG |G-CUU-A-U AAAUUCUGAG 9061 AG(U--UCCU )AUUAAAGAA --UUUGUUUG GC-ACCUCGA UGUC|GG--C U|C|AUCAC| 9121 AU-CC-UGGU GG-UG(--CA -GA)AUCUGC CAAG-GGU|U UGGC(UGUUC )GCCAA-UUA 9181 A--AGUGGU- --ACGUGAGC UGGGUUUAAA AC|GU-U(GU GA)GACAGUU UGGUCCCUAU 9241 CU|GUUGU-A GA|A|<---- ---------- ---------- ---------- ---------- 9301 >UUAAG-AAA CG-AGG-CUG AGA-UCGGAU GC--(CAGU- AC(-GAGA)G GACC-)GAUU 9361 A--GA-<--- ---------- ---------- -------->A CUAGCCU-CU GGUUCGGCAU 9421 C|-UAC-UUU (aaaua)<-- ---------- ---------- ---------- ---------- 9481 ---------- ---------- ---------- ---------- ---------- ---------> 9541 AAG-GUAUAG AAGC--UACG CUAA-GCUGG Aua------- ---------- -------ggc 9601 uaauuuuuua auuaaaguuu (uuuagc--u -ugaa)u-aa -uu-agaagc ccuUUAG--c 9661 aucUC--G-- -UUUCU-<-- ---------- ---------- ---------- ---------- 9721 ---------- ---------- ---------- ---------- ---------- ---------- 9781 ---------- ---------- ---------- ---------- ---------- ---------- 9841 ---------- ---------- ---------- ---------- ---------- ---------- 9901 ---------- ---------- ------>--| ---------- ---------a auaauau|UU 9961 UAG(AAGACU A--)CUAAAU U--------- ---------- ---------- ------aauu 10021 u|gaaguuug ---------- ---------- ---------- ---------- ---------- 10081 ---------- ----cuguua uag------- ---------- --------(- ---------- 10141 --------gg cucuuuacga g)c-gua--- ---------- ---------- ---------- 10201 ----ccagcu u|u|cu-uua aaaaa----- ---------- ---------- -----auauu 10261 a--------- ---------- ---------- -agacucuua uuauuauuau au-------- 10321 --------|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ||||| // LOCUS mt.P.tetra 10775 bp RNA RNA ~?~???? DEFINITION mitochondria,Paramecium tetraurelia 7S+20S. ACCESSION No information KEYWORDS No information. SOURCE mitochondria,Paramecium tetraurelia 7S+20S. ORGANISM mitochondria,Paramecium tetraurelia 7S+20S. REFERENCE 1 (bases 1 to 40469) AUTHORS No information JOURNAL 5173-5181 STANDARD No information COMMENTS Organism information Culture collection: ? Sequence information (bases 1 to 10775) Corresponding GenBank entry: K01749 Phylo:Mitochondria,Protozoan,Paramecium Modified from M. Schnares comments BASE COUNT 854 a 377 c 544 g 793 t 8207 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~----- -----uuugc agucu----- ---------- ---------- 241 ---------- ---------- ---------- -----aacaA AGCACUAGA- ----CGGAUG 301 |CCU--AAA| AAUCUUGG-U U|gagggcgu aa-------- -----aucu| -aaau(--ac 361 gau------) a|uuuguau- gUAAGC-|UU --ucuuu(-- ---------- ---------- 421 ugauau-)au agaa-----U UGCUUA---- ggaugua-ca agggc----- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---<------ ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- ---------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 ---------- ---------- ---------- ---------- ---------- ---------- 781 ---------- ---------- ---------- -------->- ccuugaAAAU |UUUAUGAAG 841 CGA(AACA)U CGUAGUA--- -AUAAA---- ---------- -----uc--- ---uaaaaca 901 uAAUUC(-AA CU)GA-G-AU |GUU-AA-A- -GUAA-C(-G GUGA)GUGAA --acaaagu- 961 -AGCUCA<-- ---------- ---------- ---------- ---------- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- --->------ 1201 ---------- -aaaauuaga aaagagggcu gaauuacuu< ---------- ---------- 1261 ---------- ---------- ---------> (ggaa--)aa guaa------ GC-|U(ACA) 1321 G--UGGG(UG AUAGC)CCCg ua--agcuuu u--------- ---------- ---------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- ---GAGUAUA UAUUAU(--- ---------- 1561 uaacaaa)AU AAUAUAGAAA ------uguu u(-uuca-a) -aaaaaa--A AGCUA--AUA 1621 ---AAACCAA A-UU-UUGAU AGAA-AA--- -UAAGUACC( -GUGA-)GGG ---AAA-GG- 1681 UG-------- ---------- ---------- ---------- ---------- ---------- 1741 AAAAGAAAUU U(-gua---) GAAU------ ---------- ---------g uuuaAAAGA- 1801 UUCUG-AAAU CUAG-UGC-A G-<------- ---------- ---------- ---------- 1861 ----->UGAA ACAGUUAAAG C-------<- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------> (----guguu 2041 --)------- GUUUUAAC-G UACCUU(UU- GUAUA)AUGG |GCC-AACUA GU-----UU- 2101 AUAAAAUUAG CGA--gc--- -------(-- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- -uuaucaaau c)-------- -----g-cGU 2521 AAU-(-GAAA )--AU----- --(------) ---------- ---------G UUAAU-UUUA 2701 UAA-GACCCG AA-GUCAA-G UG-AUCUAAU CAU-GGC-UA GGU------- ---------- 2761 -(-------- ---------- ---------- ---------- ----agaag) ---------- 2821 --AUCGAA-C CC-AUAAAU( GUUGCAA-A) AUUU-CGGGA --GAAGCUG- UGAUUAG-GG 2881 GU(G-AAAG) GCU-AAUC-A A-ACUUGACG AUAGCU-GGU UUUUC--GCG AA-AUC-UAU 2941 (-CUAC)GUA GA-GU-AUUU uuuU------ ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- --------uc UUU|-UGUGC 3061 G|GGGUAG|U GUAAUCU--u uu-cuu--aa gaaga---(u cuga----)< ---------- 3121 ---------- ---------- ---------- ---------- ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---->---uc uu--uu-uuc 3301 gug--a--AG AAUCUUCC-- AAUA|-CGCA -U-U---AAA ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- -au---aa-u -AAAUAAAAC GGACU--GA- GA-GU(-GCA 3481 AAG)AUUCUU GG-UC----G AGAGGG(AAA -CAG)CCC-A GACCG-U-AC -GA-UAA--- 3541 --AGU-GCAU -AAA-CA-A- UGCGAAGUA- ---------- -----aaag- aauuguuuuu 3601 aaa------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- aaaau-AUCG G<-------- ---------- ---------- 3721 ---------- ---------- ---------- ---------- -->GAGGU-A GGC(UUAGAA 3781 UC-A)-GCCA -GCCU|U(U- AA)A|GAAAG C(--GUAACA )GC|-UCAC- CAAUAGuaa-aa-a -ua-auu|-u uuaa------ ---------- ---------- ----auuaaa 3961 GCGCU----- ---------- ---------- ---------- ---------- ---------- 4021 ---------- ----AAGCAU UGU------- ---------- ---------- ---------- 4081 -------|AC UGAA--GCG| G--C-GG|G- ---------- ---------- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- ---------- ---------- ---------- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- --------(u 4441 aacu--)--- ---------- -C-----GGU AGCGA-AA|- CG-UUUUGUA G---GUUGUU 4501 G--------A AGGUU-UAUU (GAGA---)< ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ------->AA UAG--GCU-G G|AGAU---| AUCAAAAUUG AUAAUGU-UG 4681 GC|AUGAGUA -AUA--GAC- AAA-AU-GU- (ucaaa---- ---------- ---------- 4741 ---------- -----)-U-C AUUUU-|UGU U-UGAU-AAG UUA--GGGUU -|----GCUU 4801 UGUUUu--GA ---------- ----(--UCA UC)U-U|-AC AAAGUG---- ---------- 4861 ---UGAUC-- -CGGUCUCUA A-U-U-U--- uuuAAAU(-a gau------- ------)<-- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 >-auuu---- uu---A-AAG AU-GAGCU-- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ------|--- ---------- |--------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ---------- ---------- 5221 ---------- ---------- ---------- ---------- ---------- ---------- 5281 ---------- ---------- ---------- ---------- ---------- ---------- 5341 ---------- ---------- ---------- ---------- ---------- ---------- 5401 ---------- ---------- ---------- ---------- ---------- ---------- 5461 ---------- ---------- ---|------ ---------- ---------- ---------- 5521 |--------- ---------- ---------- ---------- ---------- ---------- 5581 --<------- ---------- ---------- ---------- ---------- ---------- 5641 ---------- ---------- ------->-- ---------- ---------- ------ ---------- ---------- -ACCGUA|CU 6481 ---AACACU- -(AACGCA)A G|UACUU-UA GUC-(GAG-C A-----)-GA UGACGACAA| 6541 |--AAGAG-C U--AAUGAUA -UUGA-AGGA ACUCGGCAAA AUUACU-UUG UAAC(UUCG- 6601 )GGAUAA-AA AGU|gc---- ---------- -----(guca ---)<----- ---------- 6661 ---------- ---------- ---------- ---------- ---------- ---------- 6721 ---------- ---------- ---------- ---------- ---------- ---------- 6781 --gc|a(aac )aaaaaaaug GGGGGUAG|C GA---CUG-U UU(ACUAA)A AA-CAUA-AG 6841 AUUUUG|CA- -AAAUU---- ---------- (--uaau--- ------)--- ---------- 6901 UAUGAUGUA- UAA-AAUCUG ACUCCU<--- ---------- ---------- ---------- 6961 ---------- ---------- -------->G CC-CG-GU|G UUGUCA-UGC AAAGUU-UU- 7021 --AACGGu-- --(------- ---------- ---------- ---------- ---------- 7081 ---------- ---------- ---------u agc)----gC UGUU--GAUA A-CAAGCA-| 7141 GC-AAUA-AA C-|GG-C|-G -GCCAU-(AA CUCUG)AUGG UC|C(UAA)- GG-UAGCAAA 7201 AUC-CC-U-U |GACGGG(-U AAGU-)UCCG UC|CU-GCAC GAAUGGAGUA A-CGACUGCC 7261 CU-------- ---------- -------ACU GUCUCCAAUA UCAG-CU-CU ----AUGAAA 7321 UU|G|AAUUU GC-UG(U-GA AGAUG)CAGC UU-----UUU ACAACUAGAC GGAAAG-ACC 7381 CUAUGC-|-A CCUUU--ACU GA|--U-GCU AGG--AACU| <--------- ---------- 7441 ---------- ---------- --->AAAGG- GA-----UAU -Acuggaga- ua----aauU 7501 AAGGUAGGA- -gu------- ---------- --<------- ---------- ---------- 7561 ---------- ---------- ---------- ---------- ---------- ---------- 7621 ---------- ---------- ---------> --(----uaa a)-------- --------uc 7681 gcAAUUGAAA AACUACU|u- ----cucuu- u-U-A-CGUC UCUU-Cau-- ---------- 7741 -----(---- ----)----- ---------- ---------- ---------- --------uuua cuUUU-C-UG -GCU-GU-UA GUUUAACUG( 8161 GGG)CG-GU- U|GCCUCC(- --------UA AAAAGUAAC- )GGAG-GU|G |A|GCAU-|< 8221 ---------- ---------- ---------- ---------- ---------- ---------- 8281 ---------- ---------- ---------- ---------- ---------- ---------- 8341 ---------- ---------- ---------- ---------- ---------- ->A-AAgUUA 8401 -CG|--CU-- uuguga (auuuu---- )ucuuugcaa aa-------- ---------- 8701 ---------- ---------- ---------- ---ugAG|uu (-|-AAUA)a aac-uGC-GU 8761 A-AU-UUGAU UAAAU-UAC( -aaacua--- )GUAAU-UUA G--------- ---------- 8821 ---------- --------GG GC-------- ---(uaauu- -)-------- ----GCC-UG 8881 C|---UAUAA UGAUC-CGGU GU-U------ ---------- UUU(------ ---------- 8941 ---------- ---------- ---------- ---------- ----UUUUGA AU)AA|GACA 9001 UCGCUCAAC- |GAAUAAAAG GUACGC|UAG G|GAUAACAG |G-CUU-A-U AAAUUCUGAG 9061 AG(U--UCCU )AUUAAAGAA --UUUGUUUG GC-ACCUCGA UGUC|GG--C U|C|AUCAC| 9121 AU-CU-UGGU GG-UG(--CA -GA)AUCUGC CAAG-GGU|U UGGC(UGUUC )GCCAA-UUA 9181 A--AGUGGU- --ACGUGAGC UGGGUUUAAA AC|GU-U(GU GA)GACAGUU UGGUCCCUAU 9241 CU|GUUGU-A GA|A|<---- ---------- ---------- ---------- ---------- 9301 >UUAAG-AAA CG-AGG-CUG AGA-UCG-AC GC--(CAGU- AC(-GAGA)G GACC-)GACU 9361 A--GA-<--- ---------- ---------- -------->A CUAGCCU-CU GGUUCGGGAU 9421 C|-UAC-UUU (aaaua)<-- ---------- ---------- ---------- ---------- 9481 ---------- ---------- ---------- ---------- ---------- ---------> 9541 AAG-GUAUAG AUGC--UAUG CUAA-GCUGG Aua------- ---------- -------agc 9601 uaauuuuuua auuaaaauuu (uuuagc--u -uaaa)g-aa -uu-agaagc uuuUUAG--c 9661 aacUC--G-- -UUUCU-<-- ---------- ---------- ---------- ---------- 9721 ---------- ---------- ---------- ---------- ---------- ---------- 9781 ---------- ---------- ---------- ---------- ---------- ---------- 9841 ---------- ---------- ---------- ---------- ---------- ---------- 9901 ---------- ---------- ------>--| ---------- ---------a auaguau|UU 9961 UAG(AAGACU A--)CUAAGU U--------- ---------- ---------- ------aauu 10021 u|gaagguag ---------- ---------- ---------- ---------- ---------- 10081 ---------- ----cuguua uag------- ---------- --------(- ---------- 10141 --------gg cccuuaacgg g)c-gua--- ---------- ---------- ---------- 10201 ----ccagcu c|c|cc-uua aaaaa----- ---------- ---------- -----auacu 10261 a--------- ---------- ---------- -agacucuua uuauuauuau au-------- 10321 --------|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ||||| // LOCUS mt.T.pyr.1 10775 bp RNA RNA 11-JAN-191 DEFINITION Mitochondria Tetrahymena pyriformis. ACCESSION No information KEYWORDS No information. SOURCE Mitochondria Tetrahymena pyriformis. ORGANISM Mitochondria Tetrahymena pyriformis. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 10775) Corresponding GenBank entry: M58011 BASE COUNT 997 a 280 c 414 g 904 t 8180 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~GUA-G UAAA------ -aau------ ---------- ---------- 241 ---------- ---------- ---------- -----aauaA AGCAUUAAA- ----UGGAUG 301 |CCU--AGA| AUU-UAAA-U U|uuuucg-- ---------- -----uaaa| caaau(-uua 361 cgau-----) a|ucuauuu- aGUAAAU|Aa u-auauu(-- ---------- ---------- 421 gauauu-)uu uauu-----U AUUUGC---A AUUA-au--- -agau----- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---<------ ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- ---------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 ---------- ---------- ---------- ---------- ---------- ---------- 781 ---------- ---------- ---------- -------->u aaaaauUAAU |UUAACGAAG 841 UGA(AACA)U CACAGUA--- -GUUAU---- ---------- ---------- ----UUUUAA 901 AAACUC(-AA UU)GA-G-AA |UAG-UAU-- ---AG-U(-G GUGA)GCUUA --UACUAUA- 961 -AGUUUU------ 1201 ---------- ---------- ----aaaauu gaaaauuuu< ---------- ---------- 1261 ---------- ---------- ---------> (agaa--)ua aauu------ AC-|C(AAA) 1321 G--UAGG(UG AAAGU)CCAg ua--aauuuu u--------- ---------- ---------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- ---UAGUAAA UUUCAA(--- ---------- 1561 uaaguuu)UU GAAAUUGAAA ----auUAGA A(AUCUA-C) -UUCUA---A AACUU--AAA 1621 ---AAAUUUA A-AU-UCUAU AGUA-AA--- --AAGUACC( -GCGA-)GGG ---AAA-GG- 1681 UG-------- ---------- ---------- ---------- ---------- ---------- 1741 AAAAG--auu -(-uuu---) -aau------ ---------- --------au cuuAAAAGA- 1801 ACCUA-AAAU UUAA-UGC-U A-<------- ---------- ---------- ---------- 1861 ----->-AAU ACAGUUAAGG C-------<- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------> (----uuuau 2041 --)------- GUUUUAAC-G UACCUU(UU- GCAUA)AUGG |GCU-AGCGA GU-----UU- 2101 AUAUAAUUAG CGA--guaau u-uau--(-- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- -----aauaa a)----auaa u-auua-cGA 2521 AUC-(-GAUA )--GA----- --(------) ---------- ---------G UUAAU-UAUA 2701 UAA-GACCCG AA-GCUAA-G UG-AUCUAAU UAU-GGU-UA GAUUAAG--- G-GU--A--- 2761 -(-------- ---------- ---------- ---------- -----uuua) ---UACCUAA 2821 GGAUCGAA-C UC-UUAAAU( GUUGCAA-A) AUUU-UGGGA --UAAACUG- UAAUUAG-GG 2881 GU(G-AAAG) GCU-UAUC-A A-ACUUAGUU AUAGCU-GGU UUUCC--ACG AA-ACC-UAU 2941 (-UUAA)GUA GG-GU-GAUA UUUU------ ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- --------au uau|-AAAAU 3061 U|AGGUUU|A AAUAACU--a ua-ucu--au aauuaa--(u aug-----)< ---------- 3121 ---------- ---------- ---------- ---------- ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---->--uua au--ua--ua 3301 aaa-uu--AG UAUAUAAU-- AAUU|-AGUU -U-U---auu ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- -u----AA-A -UAUU-AAUC AGACU--AU- UA-GC(-GCU 3481 AAG)GUUUAU AG-UC----A AGAGAG(AAA -CAG)CUC-A GAUUA-A-AC -AA-UAA--- 3541 --GGU-CUAC -AAA-AG-U- AAAUAAUUU- ---------- --uggaga-- UUGUUUUUAU 3601 U-A------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- UUAUC-AAUA A<-------- ---------- ---------- 3721 ---------- ---------- ---------- ---------- -->GAUGU-A GGC(UUGGAA 3781 GC-A)-GCCA -UCAU|U(U- UA)A|AAAAG C(--GUAAAA )GC|-UUAA- UAUUGAUAU-AA-A -AA-UAA|-u cau-aaau-- ---------- ---------- ----gaaaau 3961 agauu----- ---------- ---------- ---------- ---------- ---------- 4021 ---------- --aaUUUUUA CUU------- ---------- ---------- ---------- 4081 -------|AC CGAA--UUG| A--U-AA|AU C--------- ---------- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- ---------- ---------- ---------- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- --------(g 4441 aaa---)--- --------GA -U-----GGU AGUGG-AA|- CA-UUUUGUA U---AA-au- 4501 ---------A AAUAA-AAUU (GUGA---)< ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ------->AA UUU--UAU-A U|c-UU---| AUCAAUAUAG AUAAUGC-UA 4681 GC|AUGAGUA -GUA--GAC- AUA-AU-GU- (gagaa---- ---------- ---------- 4741 ---------- -----)-U-C AUUAU-|CGC C-UGAU-GUA CAA--GGGUU -|----GCUA 4801 AAUUU---GA ---------- ----(--UAA UC)U-U|-AU UUAGUG---- ---------- 4861 ---UAAAU-- -CGGUUUCUA A-A-A-U--- -uuAAAU(-G UAU------- ------)<-- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 >-auuu---- uu---A-UUG AU-GA-AUA- CGAA(----- ---------- ---------- 5041 ---------- --auauaaaa ----)UUCUU |---AA|--- ---------- |--------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ---------- ---------- 5221 ---------- ---------- ---------- ---------- ---------- ---------- 5281 ---------- ---------- ---------- ---------- ---------- ---------- 5341 ---------- ---------- ---------- ---------- ---------- ---------- 5401 ---------- ---------- ---------- ---------- ---------- ---------- 5461 ---------- ---------- ---|------ ---------- ---------- ---------- 5521 |--------- ---------- ---------- ---------- ---------- ---------- 5581 --<------- ---------- ---------- ---------- ---------- ---------- 5641 ---------- ---------- ------->-- ---------- ---------- ---<------ 5701 ---------- ---------- ---------- ---------- ---------- ---------- 5761 ---------- ---------- ---------- ---------- ---------- ---------- 5821 ---------- ---------- ---------- ---------- ---------- ---------- 5881 ---------- ---------- ---------- ---------- ---------- ---------- 5941 ---------- ---------- ---------- ---------- ---------- ---------- 6001 ---------- ---------- ---------- ---------- ---------- ---------- 6061 ---------- ---------- ---------- ---------- ---------- ---------- 6121 ---------- ---------- ---------- ---------- ---------- ---------- 6181 ---------- ---------- ---------- ---------- ---------- ---------- 6241 ---------- ---------- ---------- ---------- ---------- ---------- 6301 ---------- ---------- ---------- ---------- ---------- ---------- 6361 ---uaaucua uuaaauauau uacauaaaau uuuuuguaau auauuuauuu aauggauuag 6421 uugcuggaaa uguuuauauu uuuuuu>--- ---------- ---------- -ACCGUA|CU 6481 ---AACUCU- -(AACACA)A G|UGUAC-AA GUA-(GAA-U A-----)-UA UAAUGGCGA| 6541 |--AGGAG-U A--AAAAGUA -UUGA-AGGA ACUAGGCAAA UUGACU-CUG UAAC(UUCG- 6601 )GGAGAA-AG AGG|GCU--- ---------- -----(uua- ---)<----- ---------- 6661 ---------- ---------- ---------- ---------- ---------- ---------- 6721 ---------- ---------- ---------- ---------- ---------- ---------- 6781 -AGC|a(acu )a--aaaaGA GAGAGUAG|C GA---CUG-U UU(AAUAA)A AA-CAUA-AG 6841 AUUUUG|CU- -AAAUU---- ---------- (--uaaa--- ------)--- ---------- 6901 UACGAAGUA- UAA-AAUCUG ACACCU<--- ---------- ---------- ---------- 6961 ---------- ---------- -------->G CC-CG-GU|G CUGCAA-GGU GAACAA-AU- 7021 --UUUGGu-- --(------- ---------- ---------- ---------- ---------- 7081 ---------- ---------- ---------a aac)----gC UAAA--AU-U U-UAAACC-| 7141 CC-AGUA-AA C-|GG-C|-G -GCCGU-(AA CCCUG)ACGG UC|C(UAA)- GG-UAGCAAA 7201 AUU-CC-U-U |GGCGGG(-U AAGU-)UCCG UC|CU-GCAU GAAUGGUGUA A-CGACUGCU 7261 CU-------- ---------- -------GCU GUCUCCAAUA CUAG-CU-CU ----ACGAAA 7321 UU|G|AAUUU UC-CG(U-GA AGAUG)CGAC AAU----AUU ACAACUAGAC GGGAAG-ACC 7381 CUAUGC-|-A CCUUU--ACU GU|--U-AUC UGU--AAAU| <--------- ---------- 7441 ---------- ---------- --->AAUUU- UU-----UUU -UAUAAUua- acu---ag-a 7501 caAGUAGGA- -AAU------ ---------- --<------- ---------- ---------- 7561 ---------- ---------- ---------- ---------- ---------- ---------- 7621 ---------- ---------- ---------> --(----uua u)-------- -------AUU 7681 AAAAAUGGAA AACUACU|u- ----aAUUA- U-A-U-UUAA AAAU-UAAAA ---------- 7741 -----(---- ----)----- ---------- ---------- ---------- --------auuu ugUUA-U-AG -AAA-GA-CA GUUUGACUG( 8161 GGG)CG-GU- C|UCCUCC(- --------UA AAAAGUAAC- )GGAG-GA|G |U|AUAA-|< 8221 ---------- ---------- ---------- ---------- ---------- ---------- 8281 ---------- ---------- ---------- ---------- ---------- ---------- 8341 ---------- ---------- ---------- ---------- ---------- ->A-AA-CUC 8401 -GG|ggua-- ucuua-<--- ---------- ---------- ---------- ---------- 8461 ---------- ---------- ---------- ---------- ---------- ---------- 8521 ---------- ---------- ---------- ---------- ---------- ---------- 8581 ---------- ---------- ---------- ---------- ---------- ---------- 8641 ---------- ---------> (uuuuaau-- )-----UAAG au-------- ---------- 8701 ---------- ---------- ---------- --caaua|UU (A|AAAUG)A AUUUUAC-UG 8761 A-GU-UUGAU UAGAG-UAC( -uuacaa--- )GUAUU-CUA A--------- ---------- 8821 ---------- --------GG AU-------- ---(AUAU-- -)-------- ----GUC-UA 8881 U|---CAUAU UGACC-CGAU AU-A------ ---------- AUU(------ ---------- 8941 ---------- ---------- ---------- ---------- ----UUGUAG AA)AA|UAUA 9001 UCGAUCAAC- |GAAUAAAAG GUACGC|UAG G|GAUAACAG |G-CUU-A-U GAGUUUUGAG 9061 AG(U--UCUU )AUUAAUAAA --CUCGUUUG GC-ACCUCGA UGUC|GG--C U|C|AUCAC| 9121 AU-CC-UGAU GG-UG(--GA -CA)AUCUAU CAAG-GGU|C CGGC(UGUUC )GCCGG-UUA 9181 A--AGUGGU- --ACGUGAGC UGGGUUUAAA AC|GU-C(GU GA)GACAGUU UGGUCCCUAU 9241 CU|GUUGU-A AU|U|<---- ---------- ---------- ---------- ---------- 9301 >AUAAG-AAA AU-AAA-UAA GAA-UUA-AC UU--(UAGU- AC(-GAGA)G GACU-)AGGA 9361 A--AA-<--- ---------- ---------- -------->U UUAAUCA-CU GGUUUGAAAA 9421 U|-UAU-UUU (-----) 9541 AAA-GUAUGG UUUU--UAAG CUAC-AUUAA A-C------- ---------- -------AAA 9601 ---------- -AUAAUUGCU (GAAUAU--U AUAUA)A-GC -AA--GAAUU UAACUUA--- 9661 UAUUA--U-- -UUUCU-<-- ---------- ---------- ---------- ---------- 9721 ---------- ---------- ---------- ---------- ---------- ---------- 9781 ---------- ---------- ---------- ---------- ---------- ---------- 9841 ---------- ---------- ---------- ---------- ---------- ---------- 9901 ---------- ---------- ------>--| ---------- ---------a auaaauu|UU 9961 UUA(AAGACU A--)UAUUAU U--------- ---------- ---------- ------UAAG 10021 U|UUUUA-UA ---------- ---------- ---------- ---------- ---------- 10081 ---------- ---UAAGUGU AGU------- ---------- --------(- ---------- 10141 ---------- -------uau a)ACUAA--- ---------- ---------- ---------- 10201 ----CGAAUA U|A|UAAAAA ACUua-u--- ---------- ---------- -----aauuu 10261 a--------- ---------- ---------- ---------- ---AUA---- ---UUUACUA 10321 CAGUU---|U AGUUUAUA~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ||||| // LOCUS mt.T.pyr.2 10775 bp RNA RNA 11-JAN-191 DEFINITION Tetrahymena pyriformis. ACCESSION No information KEYWORDS No information. SOURCE Tetrahymena pyriformis. ORGANISM Tetrahymena pyriformis. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 10775) Corresponding GenBank entry: M58010 BASE COUNT 994 a 282 c 416 g 903 t 8180 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~GUA-G UAAA------ -aau------ ---------- ---------- 241 ---------- ---------- ---------- -----aauaA AGCAUUAAA- ----UGGAUG 301 |CCU--AGA| AUU-UAAA-U U|uuuucg-- ---------- -----uaaa| caaau(-uua 361 cgau-----) a|ucuauuu- aGUAAAU|Aa u-auauu(-- ---------- ---------- 421 gauauu-)uu uauu-----U AUUUGC---A AUUA-au--- -agau----- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---<------ ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- ---------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 ---------- ---------- ---------- ---------- ---------- ---------- 781 ---------- ---------- ---------- -------->u aaaaauUAAU |UUAACGAAG 841 UGA(AACA)U CACAGUA--- -GUUAU---- ---------- ---------- ----UUUUAA 901 AAACUC(-AA UU)GA-G-AG |UAG-UAU-- ---AG-U(-G GUGA)GCUUA --UACUAUA- 961 -AGUUUU------ 1201 ---------- ---------- ----aaaauu gaaaauuuu< ---------- ---------- 1261 ---------- ---------- ---------> (agaa--)ua aauu------ AC-|C(AAA) 1321 G--UAGG(UG AAAGU)CCAg ua--aauuuu u--------- ---------- ---------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- ---UAGUAAA UUUCAA(--- ---------- 1561 uaaguuu)UU GAAAUUGAAA ----auUAGA A(AUCUA-C) -UUCUA---A AACUU--AAA 1621 ---AAAUUUA A-AU-UCUAU AGUA-AA--- --AAGUACC( -GCGA-)GGG ---AAA-GG- 1681 UG-------- ---------- ---------- ---------- ---------- ---------- 1741 AAAAG--auu -(-uuu---) -aau------ ---------- --------au cuuAAAAGA- 1801 ACCUA-AAAU UUAA-UGC-U A-<------- ---------- ---------- ---------- 1861 ----->-AAU ACAGUUAAGG C-------<- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------> (----uuuau 2041 --)------- GUUUUAAC-G UACCUU(UU- GCAUA)AUGG |GCU-AGCGA GU-----UU- 2101 AUAUAAUUAG CGA--guaau u-uau--(-- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- -----aauaa a)----auaa u-auua-cGA 2521 AUC-(-GAUA )--GA----- --(------) ---------- ---------G UUAAU-UAUA 2701 UAA-GACCCG AA-GCUAA-G UG-AUCUAAU UAU-GGU-UA GAUUAAG--- G-GU--A--- 2761 -(-------- ---------- ---------- ---------- -----uuua) ---UACCUAA 2821 GGAUCGAA-C UC-UUAAAU( GUUGCAA-A) AUUU-UGGGA --UAAACUG- UAAUUAG-GG 2881 GU(G-AAAG) GCU-UAUC-A A-ACUUAGUU AUAGCU-GGU UUUCC--ACG AA-ACC-UAU 2941 (-UUAA)GUA GG-GU-GAUA UUUU------ ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- --------au uau|-AAAAU 3061 U|AGGUUU|A AAUAACU--a ua-ucu--au aauuaa--(u aug-----)< ---------- 3121 ---------- ---------- ---------- ---------- ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---->--uua au--ua--ua 3301 aaa-uu--AG UAUAUAAU-- AAUU|-AGUU -U-U---auu ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- -u----AG-A -UAUU-AAUC AGACU--AU- UA-GC(-GCU 3481 AAG)GUUUAU AG-UC----A AGAGAG(AAA -CAG)CUC-A GAUUA-A-AC -AA-UAA--- 3541 --GGU-CUAC -AAA-AG-U- AAAUAAUUU- ---------- --uggaga-- UUGUUUUUAU 3601 U-A------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- UUAUC-AAUA A<-------- ---------- ---------- 3721 ---------- ---------- ---------- ---------- -->GAUGU-A GGC(UUGGAA 3781 GC-A)-GCCA -UCAU|U(U- UA)A|AAAAG C(--GUAAAA )GC|-UUAA- UAUUGAUAU-AA-A -AA-UAA|-u cau-aaau-- ---------- ---------- ----gaaaau 3961 agauu----- ---------- ---------- ---------- ---------- ---------- 4021 ---------- --aaUUUUUA CUU------- ---------- ---------- ---------- 4081 -------|AC CGAA--UUG| A--U-AA|AU C--------- ---------- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- ---------- ---------- ---------- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- --------(g 4441 aaa---)--- --------GA -U-----GGU AGUGG-AA|- CA-UUUUGUA U---AA-au- 4501 ---------A AAUAA-AAUU (GUGA---)< ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ------->AA UUU--UAU-A U|c-UU---| AUCAAUAUAG AUAAUGC-UA 4681 GC|AUGAGUA -GUA--GAC- AUA-AU-GU- (gagaa---- ---------- ---------- 4741 ---------- -----)-U-C AUUAU-|CGC C-UGAU-GUA CAA--GGGUU -|----GCUA 4801 AAUUU---GA ---------- ----(--UAA UC)U-U|-AU UUAGUG---- ---------- 4861 ---UAAAU-- -CGGUUUCUA A-A-A-U--- -uuAAAU(-G UAU------- ------)<-- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 >-auuu---- uu---A-UUG AU-GA-AUA- CGAA(----- ---------- ---------- 5041 ---------- --auauaaaa ----)UUCUU |---AA|--- ---------- |--------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ---------- ---------- 5221 ---------- ---------- ---------- ---------- ---------- ---------- 5281 ---------- ---------- ---------- ---------- ---------- ---------- 5341 ---------- ---------- ---------- ---------- ---------- ---------- 5401 ---------- ---------- ---------- ---------- ---------- ---------- 5461 ---------- ---------- ---|------ ---------- ---------- ---------- 5521 |--------- ---------- ---------- ---------- ---------- ---------- 5581 --<------- ---------- ---------- ---------- ---------- ---------- 5641 ---------- ---------- ------->-- ---------- ---------- ---<------ 5701 ---------- ---------- ---------- ---------- ---------- ---------- 5761 ---------- ---------- ---------- ---------- ---------- ---------- 5821 ---------- ---------- ---------- ---------- ---------- ---------- 5881 ---------- ---------- ---------- ---------- ---------- ---------- 5941 ---------- ---------- ---------- ---------- ---------- ---------- 6001 ---------- ---------- ---------- ---------- ---------- ---------- 6061 ---------- ---------- ---------- ---------- ---------- ---------- 6121 ---------- ---------- ---------- ---------- ---------- ---------- 6181 ---------- ---------- ---------- ---------- ---------- ---------- 6241 ---------- ---------- ---------- ---------- ---------- ---------- 6301 ---------- ---------- ---------- ---------- ---------- ---------- 6361 ---uaaucua uuaaauauau uacauaaaau uuuuuguaau auauuuauuu aauggauuag 6421 uugcuggaaa uguuuauauu uuuuuu>--- ---------- ---------- -ACCGUA|CU 6481 ---AACUCU- -(AACACA)A G|UGUAC-AA GUA-(GAA-U A-----)-UA UAAUGGCGA| 6541 |--AGGAG-U A--AAAAGUA -UUGA-AGGA ACUAGGCAAA UUGACU-CUG UAAC(UUCG- 6601 )GGAGAA-AG AGG|GCU--- ---------- -----(uua- ---)<----- ---------- 6661 ---------- ---------- ---------- ---------- ---------- ---------- 6721 ---------- ---------- ---------- ---------- ---------- ---------- 6781 -AGC|a(acu )a--aaaaGA GAGAGUAG|C GA---CUG-U UU(AAUAA)A AA-CAUA-AG 6841 AUUUUG|CU- -AAAUU---- ---------- (--uaaa--- ------)--- ---------- 6901 UACGAAGUA- UAA-AAUCUG ACACCU<--- ---------- ---------- ---------- 6961 ---------- ---------- -------->G CC-CG-GU|G CUGCAA-GGU GAACAA-AU- 7021 --UUUGGu-- --(------- ---------- ---------- ---------- ---------- 7081 ---------- ---------- ---------a aac)----gC UAAA--AU-U U-UAAACC-| 7141 CC-AGUA-AA C-|GG-C|-G -GCCGU-(AA CCCUG)ACGG UC|C(UAA)- GG-UAGCAAA 7201 AUU-CC-U-U |GGCGGG(-U AAGU-)UCCG UC|CU-GCAU GAAUGGUGUA A-CGACUGCU 7261 CU-------- ---------- -------GCU GUCUCCAAUA CUAG-CU-CU ----ACGAAA 7321 UU|G|AAUUU UC-CG(U-GA AGAUG)CGAC AAU----AUU ACAACUAGAC GGGAAG-ACC 7381 CUAUGC-|-A CCUUU--ACU GU|--U-AUC UGU--AAAU| <--------- ---------- 7441 ---------- ---------- --->AAUUU- UU-----UUU -UAUAAUua- acu---ag-a 7501 caAGUAGGA- -AAU------ ---------- --<------- ---------- ---------- 7561 ---------- ---------- ---------- ---------- ---------- ---------- 7621 ---------- ---------- ---------> --(----uua u)-------- -------AUU 7681 AAAAAUGGAA AACUACU|u- ----aAUUA- U-A-U-UUAA AAAU-UAAAA ---------- 7741 -----(---- ----)----- ---------- ---------- ---------- --------auuu ugUUA-U-AG -AAA-GA-CA GUUUGACUG( 8161 GGG)CG-GU- C|UCCUCC(- --------UA AAAAGUAAC- )GGAG-GA|G |U|AUAA-|< 8221 ---------- ---------- ---------- ---------- ---------- ---------- 8281 ---------- ---------- ---------- ---------- ---------- ---------- 8341 ---------- ---------- ---------- ---------- ---------- ->A-AA-CUC 8401 -GG|ggua-- ucuua-<--- ---------- ---------- ---------- ---------- 8461 ---------- ---------- ---------- ---------- ---------- ---------- 8521 ---------- ---------- ---------- ---------- ---------- ---------- 8581 ---------- ---------- ---------- ---------- ---------- ---------- 8641 ---------- ---------> (uuuuaau-- )-----UAAG au-------- ---------- 8701 ---------- ---------- ---------- --caaua|UU (A|AAAUG)A AUUUUAC-UG 8761 A-GU-UUGAU UAGAG-UAC( -uuacaa--- )GUAUU-CUA A--------- ---------- 8821 ---------- --------GG AU-------- ---(ACAU-- -)-------- ----GUC-UA 8881 U|---CAUAU UGACC-CGAU AU-A------ ---------- AUU(------ ---------- 8941 ---------- ---------- ---------- ---------- ----UUGUAG AA)AA|UAUA 9001 UCGAUCAAC- |GAAUAAAAG GUACGC|UAG G|GAUAACAG |G-CUU-A-U GAGUUUUGAG 9061 AG(U--UCUU )AUUAAUAAA --CUCGUUUG GC-ACCUCGA UGUC|GG--C U|C|AUCAC| 9121 AU-CC-UGAU GG-UG(--GA -CA)AUCUAU CAAG-GGU|C CGGC(UGUUC )GCCGG-UUA 9181 A--AGUGGU- --ACGUGAGC UGGGUUUAAA AC|GU-C(GU GA)GACAGUU UGGUCCCUAU 9241 CU|GUUGU-A AU|U|<---- ---------- ---------- ---------- ---------- 9301 >AUAAG-AAA AU-AAA-UAA GAA-UUA-AC UU--(UAGU- AC(-GAGA)G GACU-)AGGA 9361 A--AA-<--- ---------- ---------- -------->U UUAAUCA-CU GGUUUGAAAA 9421 U|-UAU-UUU (-----) 9541 AAA-GUAUGG UUUU--UAAG CUAC-AUUAA A-C------- ---------- -------AAA 9601 ---------- -AUAAUUGCU (GAAUAU--U AUAUA)A-GC -AA--GAAUU UAACUUA--- 9661 UAUUA--U-- -UUUCU-<-- ---------- ---------- ---------- ---------- 9721 ---------- ---------- ---------- ---------- ---------- ---------- 9781 ---------- ---------- ---------- ---------- ---------- ---------- 9841 ---------- ---------- ---------- ---------- ---------- ---------- 9901 ---------- ---------- ------>--| ---------- ---------a auaaauu|UU 9961 UUA(AAGACU A--)UAUUAU U--------- ---------- ---------- ------UAAG 10021 U|UUUUA-UA ---------- ---------- ---------- ---------- ---------- 10081 ---------- ---UAAGUGU AGU------- ---------- --------(- ---------- 10141 ---------- -------uau a)ACUAA--- ---------- ---------- ---------- 10201 ----CGAAUA U|A|UAAAAA ACUua-u--- ---------- ---------- -----aauuu 10261 a--------- ---------- ---------- ---------- ---AUA---- ---UUUACUA 10321 CAGUU---|U AGUUUAUA~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ||||| // LOCUS (3)-FM-GRP 10775 bp RNA RNA 09-JAN-1999 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 10775) Corresponding GenBank entry: DIVIDER BASE COUNT 0 a 0 c 0 g 0 t 10775 others ORIGIN 1 |......... .......... .......... .......... .......... .......... 61 .......... .......... .......... .......... .......... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......... .......... .......... .......... 241 .......... .......... .......... .......... .......... .......... 301 .......... .......... .......... .......... .......... .......... 361 .......... .......... .......... .......... .......... .......... 421 .......... .......... .......... .......... .......... .......... 481 .......... .......... .......... .......... .......... .......... 541 .......... .......... .......... .......... .......... .......... 601 .......... .......... .......... .......... .......... .......... 661 .......... .......... .......... .......... .......... .......... 721 .......... .......... .......... .......... .......... .......... 781 .......... .......... .......... .......... .......... .......... 841 .......... .......... .......... .......... .......... .......... 901 .......... .......... .......... .......... .......... .......... 961 .......... .......... .......... .......... .......... .......... 1021 .......... .......... .......... .......... .......... .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .......... .......... .......... .......... .......... 1201 .......... .......... .......... .......... .......... .......... 1261 .......... .......... .......... .......... .......... .......... 1321 .......... .......... .......... .......... .......... .......... 1381 .......... .......... .......... .......... .......... .......... 1441 .......... .......... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... .......... .......... .......... .......... .......... 1621 .......... .......... .......... .......... .......... .......... 1681 .......... .......... .......... .......... .......... .......... 1741 .......... .......... .......... .......... .......... .......... 1801 .......... .......... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .......... .......... 1921 .......... .......... .......... .......... .......... .......... 1981 .......... .......... .......... .......... .......... .......... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... .......... .......... .......... .......... .......... 2161 .......... .......... .......... .......... .......... .......... 2221 .......... .......... .......... .......... .......... .......... 2281 .......... .......... .......... .......... .......... .......... 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... .......... 2701 .......... .......... .......... .......... .......... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... .......... 2881 .......... .......... .......... .......... .......... .......... 2941 .......... .......... .......... .......... .......... .......... 3001 .......... .......... .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .......... .......... 3181 .......... .......... .......... .......... .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .......... .......... .......... 3361 .......... .......... .......... .......... .......... .......... 3421 .......... .......... .......... .......... .......... .......... 3481 .......... .......... .......... .......... .......... .......... 3541 .......... .......... .......... .......... .......... .......... 3601 .......... .......... .......... .......... .......... .......... 3661 .......... .......... .......... .......... .......... .......... 3721 .......... .......... .......... .......... .......... .......... 3781 .....-.... .......... .......... .......... .......... .......... 3841 .......... .......... .......... .......... .......... .......... 3901 .......... .......... .......... .......... .......... .......... 3961 .......... .......... .......... .......... .......... .......... 4021 .......... .......... .......... .......... .......... .......... 4081 .......... .......... .......... .......... .......... .......... 4141 .......... .......... .......... .......... .......... .......... 4201 .......... .......... .......... .......... .......... .......... 4261 .......... .......... .......... .......... .......... .......... 4321 .......... .......... .......... .......... .......... .......... 4381 .......... .......... .......... .......... .......... .......... 4441 .......... .......... .......... .......... .......... .......... 4501 .......... .......... .......... .......... .......... .......... 4561 .......... .......... .......... .......... .......... .......... 4621 .......... .......... .......... .......... .......... .......... 4681 .......... .......... .......... .......... .......... .......... 4741 .......... .......... .......... .......... .......... .......... 4801 .......... .......... .......... ..)....... .......... .......... 4861 .......... .......... .......... .......... .......... .......... 4921 .......... .......... .......... .......... .......... .......... 4981 .......... .......... .......... .......... .......... .......... 5041 .......... .......... .......... .......... .......... .......... 5101 .......... .......... .......... .......... .......... .......... 5161 .......... .......... .......... .......... .......... .......... 5221 .......... .......... .......... .......... .......... .......... 5281 .......... .......... .......... .......... .......... .......... 5341 .......... .......... .......... .......... .......... .......... 5401 .......... .......... .......... .......... .......... .......... 5461 .......... .......... .......... .......... .......... .......... 5521 .......... .......... .......... .......... .......... .......... 5581 .......... .......... .......... .......... .......... .......... 5641 .......... .......... .......... .......... .......... .......... 5701 .......... .......... .......... .......... .......... .......... 5761 .......... .......... .......... .......... .......... .......... 5821 .......... .......... .......... .......... .......... .......... 5881 .......... .......... .......... .......... .......... .......... 5941 .......... .......... .......... .......... .......... .......... 6001 .......... .......... .......... .......... .......... .......... 6061 .......... .......... .......... .......... .......... .......... 6121 .......... .......... .......... .......... .......... .......... 6181 .......... .......... .......... .......... .......... .......... 6241 .......... .......... .......... .......... .......... .......... 6301 .......... .......... .......... .......... .......... .......... 6361 .......... .......... .......... .......... .......... .......... 6421 .......... .......... .......... .......... .......... .......... 6481 .......... .......... .......... .......... .......... .......... 6541 .......... .......... .......... .......... .......... .......... 6601 .......... .......... .......... .......... .......... .......... 6661 .......... .......... .......... .......... .......... .......... 6721 .......... .......... .......... .......... .......... .......... 6781 .......... .......... .......... .......... .......... .......... 6841 .......... .......... .......... .......... .......... .......... 6901 .......... .......... .......... .......... .......... .......... 6961 .......... .......... .......... .......... .......... .......... 7021 .......... .......... .......... .......... .......... .......... 7081 .......... .......... .......... .......... .......... .......... 7141 .......... .......... .......... .......... .......... .......... 7201 .......... .......... .......... .......... .......... .......... 7261 .......... .......... .......... .......... .......... .......... 7321 .......... .......... .......... .......... .......... .......... 7381 .......... .......... .......... .......... .......... .......... 7441 .......... .......... .......... .......... .......... .......... 7501 .......... .......... .......... .......... .......... .......... 7561 .......... .......... .......... .......... .......... .......... 7621 .......... .......... .......... .......... .......... .......... 7681 .......... .......... .......... .......... .......... .......... 7741 .......... .......... .......... .......... .......... .......... 7801 .......... .......... .......... .......... .......... .......... 7861 .......... .......... .......... .......... .......... .......... 7921 .......... .......... .......... .......... .......... .......... 7981 .......... .......... .......... .......... .......... .......... 8041 .......... .......... .......... .......... .......... .......... 8101 .......... .......... .......... .......... .......... .......... 8161 .......... .......... .......... .......... .......... .......... 8221 .......... .......... .......... .......... .......... .......... 8281 .......... .......... .......... .......... .......... .......... 8341 .......... .......... .......... .......... .......... .......... 8401 .......... .......... .......... .......... .......... .......... 8461 .......... .......... .......... .......... .......... .......... 8521 .......... .......... .......... .......... .......... .......... 8581 .......... .......... .......... .......... .......... .......... 8641 .......... .......... .......... .......... .......... .......... 8701 .......... .......... .......... .......... .......... .......... 8761 .......... .......... .......... .......... .......... .......... 8821 .......... .......... .......... .......... .......... .......... 8881 .......... .......... .......... .......... .......... .......... 8941 .......... .......... .......... .......... .......... .......... 9001 .......... .......... .......... .......... .......... .......... 9061 .......... .......... .......... .......... .......... .......... 9121 .......... .......... .......... .......... .......... .......... 9181 .......... .......... .......... .......... .......... .......... 9241 .......... .......... .......... .......... .......... .......... 9301 .......... .......... .......... .......... .......... .......... 9361 .......... .......... .......... .......... .......... .......... 9421 .......... .......... .......... .......... .......... .......... 9481 .......... .......... .......... .......... .......... .......... 9541 .......... .......... .......... .......... .......... .......... 9601 .......... .......... .......... .......... .......... .......... 9661 .......... .......... .......... .......... .......... .......... 9721 .......... .......... .......... .......... .......... .......... 9781 .......... .......... .......... .......... .......... .......... 9841 .......... .......... .......... .......... .......... .......... 9901 .......... .......... .......... .......... .......... .......... 9961 .......... .......... .......... .......... .......... .......... 10021 .......... .......... .......... .......... .......... .......... 10081 .......... .......... .......... .......... .......... .......... 10141 .......... .......... .......... .......... .......... .......... 10201 .......... .......... .......... .......... .......... .......... 10261 .......... .......... .......... .......... .......... .......... 10321 .......... .......... .......... .......... .......... .......... 10381 .......... .......... .......... .......... .......... .......... 10441 .......... .......... .......... .......... .......... .......... 10501 .......... .......... .......... .......... .......... .......... 10561 .......... .......... .......... .......... .......... .......... 10621 .......... .......... .......... .......... .......... .......... 10681 .......... .......... .......... .......... .......... .......... 10741 .......... .......... .......... ||||| // LOCUS (4)-FUNGI 10775 bp RNA RNA 09-JAN-1999 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 10775) Corresponding GenBank entry: DIVIDER BASE COUNT 0 a 0 c 0 g 0 t 10775 others ORIGIN 1 |......... .......... .......... .......... .......... .......... 61 .......... .......... .......... .......... .......... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......... .......... .......... .......... 241 .......... .......... .......... .......... .......... .......... 301 .......... .......... .......... .......... .......... .......... 361 .......... .......... .......... .......... .......... .......... 421 .......... .......... .......... .......... .......... .......... 481 .......... .......... .......... .......... .......... .......... 541 .......... .......... .......... .......... .......... .......... 601 .......... .......... .......... .......... .......... .......... 661 .......... .......... .......... .......... .......... .......... 721 .......... .......... .......... .......... .......... .......... 781 .......... .......... .......... .......... .......... .......... 841 .......... .......... .......... .......... .......... .......... 901 .......... .......... .......... .......... .......... .......... 961 .......... .......... .......... .......... .......... .......... 1021 .......... .......... .......... .......... .......... .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .......... .......... .......... .......... .......... 1201 .......... .......... .......... .......... .......... .......... 1261 .......... .......... .......... .......... .......... .......... 1321 .......... .......... .......... .......... .......... .......... 1381 .......... .......... .......... .......... .......... .......... 1441 .......... .......... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... .......... .......... .......... .......... .......... 1621 .......... .......... .......... .......... .......... .......... 1681 .......... .......... .......... .......... .......... .......... 1741 .......... .......... .......... .......... .......... .......... 1801 .......... .......... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .......... .......... 1921 .......... .......... .......... .......... .......... .......... 1981 .......... .......... .......... .......... .......... .......... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... .......... .......... .......... .......... .......... 2161 .......... .......... .......... .......... .......... .......... 2221 .......... .......... .......... .......... .......... .......... 2281 .......... .......... .......... .......... .......... .......... 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... .......... 2701 .......... .......... .......... .......... .......... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... .......... 2881 .......... .......... .......... .......... .......... .......... 2941 .......... .......... .......... .......... .......... .......... 3001 .......... .......... .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .......... .......... 3181 .......... .......... .......... .......... .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .......... .......... .......... 3361 .......... .......... .......... .......... .......... .......... 3421 .......... .......... .......... .......... .......... .......... 3481 .......... .......... .......... .......... .......... .......... 3541 .......... .......... .......... .......... .......... .......... 3601 .......... .......... .......... .......... .......... .......... 3661 .......... .......... .......... .......... .......... .......... 3721 .......... .......... .......... .......... .......... .......... 3781 .....-.... .......... .......... .......... .......... .......... 3841 .......... .......... .......... .......... .......... .......... 3901 .......... .......... .......... .......... .......... .......... 3961 .......... .......... .......... .......... .......... .......... 4021 .......... .......... .......... .......... .......... .......... 4081 .......... .......... .......... .......... .......... .......... 4141 .......... .......... .......... .......... .......... .......... 4201 .......... .......... .......... .......... .......... .......... 4261 .......... .......... .......... .......... .......... .......... 4321 .......... .......... .......... .......... .......... .......... 4381 .......... .......... .......... .......... .......... .......... 4441 .......... .......... .......... .......... .......... .......... 4501 .......... .......... .......... .......... .......... .......... 4561 .......... .......... .......... .......... .......... .......... 4621 .......... .......... .......... .......... .......... .......... 4681 .......... .......... .......... .......... .......... .......... 4741 .......... .......... .......... .......... .......... .......... 4801 .......... .......... .......... ..)....... .......... .......... 4861 .......... .......... .......... .......... .......... .......... 4921 .......... .......... .......... .......... .......... .......... 4981 .......... .......... .......... .......... .......... .......... 5041 .......... .......... .......... .......... .......... .......... 5101 .......... .......... .......... .......... .......... .......... 5161 .......... .......... .......... .......... .......... .......... 5221 .......... .......... .......... .......... .......... .......... 5281 .......... .......... .......... .......... .......... .......... 5341 .......... .......... .......... .......... .......... .......... 5401 .......... .......... .......... .......... .......... .......... 5461 .......... .......... .......... .......... .......... .......... 5521 .......... .......... .......... .......... .......... .......... 5581 .......... .......... .......... .......... .......... .......... 5641 .......... .......... .......... .......... .......... .......... 5701 .......... .......... .......... .......... .......... .......... 5761 .......... .......... .......... .......... .......... .......... 5821 .......... .......... .......... .......... .......... .......... 5881 .......... .......... .......... .......... .......... .......... 5941 .......... .......... .......... .......... .......... .......... 6001 .......... .......... .......... .......... .......... .......... 6061 .......... .......... .......... .......... .......... .......... 6121 .......... .......... .......... .......... .......... .......... 6181 .......... .......... .......... .......... .......... .......... 6241 .......... .......... .......... .......... .......... .......... 6301 .......... .......... .......... .......... .......... .......... 6361 .......... .......... .......... .......... .......... .......... 6421 .......... .......... .......... .......... .......... .......... 6481 .......... .......... .......... .......... .......... .......... 6541 .......... .......... .......... .......... .......... .......... 6601 .......... .......... .......... .......... .......... .......... 6661 .......... .......... .......... .......... .......... .......... 6721 .......... .......... .......... .......... .......... .......... 6781 .......... .......... .......... .......... .......... .......... 6841 .......... .......... .......... .......... .......... .......... 6901 .......... .......... .......... .......... .......... .......... 6961 .......... .......... .......... .......... .......... .......... 7021 .......... .......... .......... .......... .......... .......... 7081 .......... .......... .......... .......... .......... .......... 7141 .......... .......... .......... .......... .......... .......... 7201 .......... .......... .......... .......... .......... .......... 7261 .......... .......... .......... .......... .......... .......... 7321 .......... .......... .......... .......... .......... .......... 7381 .......... .......... .......... .......... .......... .......... 7441 .......... .......... .......... .......... .......... .......... 7501 .......... .......... .......... .......... .......... .......... 7561 .......... .......... .......... .......... .......... .......... 7621 .......... .......... .......... .......... .......... .......... 7681 .......... .......... .......... .......... .......... .......... 7741 .......... .......... .......... .......... .......... .......... 7801 .......... .......... .......... .......... .......... .......... 7861 .......... .......... .......... .......... .......... .......... 7921 .......... .......... .......... .......... .......... .......... 7981 .......... .......... .......... .......... .......... .......... 8041 .......... .......... .......... .......... .......... .......... 8101 .......... .......... .......... .......... .......... .......... 8161 .......... .......... .......... .......... .......... .......... 8221 .......... .......... .......... .......... .......... .......... 8281 .......... .......... .......... .......... .......... .......... 8341 .......... .......... .......... .......... .......... .......... 8401 .......... .......... .......... .......... .......... .......... 8461 .......... .......... .......... .......... .......... .......... 8521 .......... .......... .......... .......... .......... .......... 8581 .......... .......... .......... .......... .......... .......... 8641 .......... .......... .......... .......... .......... .......... 8701 .......... .......... .......... .......... .......... .......... 8761 .......... .......... .......... .......... .......... .......... 8821 .......... .......... .......... .......... .......... .......... 8881 .......... .......... .......... .......... .......... .......... 8941 .......... .......... .......... .......... .......... .......... 9001 .......... .......... .......... .......... .......... .......... 9061 .......... .......... .......... .......... .......... .......... 9121 .......... .......... .......... .......... .......... .......... 9181 .......... .......... .......... .......... .......... .......... 9241 .......... .......... .......... .......... .......... .......... 9301 .......... .......... .......... .......... .......... .......... 9361 .......... .......... .......... .......... .......... .......... 9421 .......... .......... .......... .......... .......... .......... 9481 .......... .......... .......... .......... .......... .......... 9541 .......... .......... .......... .......... .......... .......... 9601 .......... .......... .......... .......... .......... .......... 9661 .......... .......... .......... .......... .......... .......... 9721 .......... .......... .......... .......... .......... .......... 9781 .......... .......... .......... .......... .......... .......... 9841 .......... .......... .......... .......... .......... .......... 9901 .......... .......... .......... .......... .......... .......... 9961 .......... .......... .......... .......... .......... .......... 10021 .......... .......... .......... .......... .......... .......... 10081 .......... .......... .......... .......... .......... .......... 10141 .......... .......... .......... .......... .......... .......... 10201 .......... .......... .......... .......... .......... .......... 10261 .......... .......... .......... .......... .......... .......... 10321 .......... .......... .......... .......... .......... .......... 10381 .......... .......... .......... .......... .......... .......... 10441 .......... .......... .......... .......... .......... .......... 10501 .......... .......... .......... .......... .......... .......... 10561 .......... .......... .......... .......... .......... .......... 10621 .......... .......... .......... .......... .......... .......... 10681 .......... .......... .......... .......... .......... .......... 10741 .......... .......... .......... ||||| // LOCUS mt.S.pombe 10775 bp RNA RNA ~?~???? DEFINITION Mitochondria Schizosaccharomyces pombe. ACCESSION No information KEYWORDS No information. SOURCE Mitochondria Schizosaccharomyces pombe. ORGANISM Mitochondria Schizosaccharomyces pombe. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 10775) Corresponding GenBank entry: X06597,X54421 Schizosaccharomyces pombe mt LSU rRNA Lang BF, Cedergren R, Gray MW (1987) The mitochondrial genome of the fission yeast, Schizosaccharomyces pombe. Sequence of the large-subunit ribosomal RNA gene, comparison of potential secondary structure in fungal mitochondrial large-subunit rRNAs and evolutionary considerations. Eur. J. Biochem. 169:527-537 BASE COUNT 1050 a 383 c 492 g 901 t 7949 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~aaugu-g uaau------ -uugaaucaa uuucuauccu uuuaaaaaua 241 caucauaaag uguacuuuuu uaaggauuua guuauUAAAG GAUUAAUUA- ----UGGAUU 301 |GCU--AAC| CAG-UUAA-U A|uuaag--- ---------- -----agga| -agcu(-u-u 361 uaa------) a|gcuuaau- ucagcaa|u- -------(-- ---------- ---------u 421 uuuua--)-- ---------a uuguugu-uu cuccuaa-ag g--------- -----(uaaa 481 )cca|----- --(cua--)- ---------- aaaagaaaga ac-------- -(-uuc-g)- 541 --------gg uuuuucuuua a--<------ ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- ---------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 ---------- ---------- ---------- ---------- ---------- ---------- 781 ---------- ---------- ---------- -------->- ---aauAAAC |UAGAGGAAC 841 UGA(AUCA)U CUUAGUA--- -CUCUA---- ---------- ---------- ---AGGAAAA 901 UAAAAU(-AA CA)AU-G-AU |UAU-UGUA- -GUAG-U(-G GCGA)ACGAA -UCAUUAAU- 961 -AGUCUA------ 1201 ---------- ---------- -uauuaaaaa aaauuuuu-< ---------- ---------- 1261 ---------- ---------- ---------> (-acca-)-a agaa------ ga-|g(aaa) 1321 a---aug(gg uucuu)cauu uu-------- ---------- ---------- u-uaAAGUAAA AUGGGA(--- ---------- 1561 --acuua)AC CUGUUUGAAU ----auUGGA G(AAccaaU) -CUCCAA--A GACUA-AAUA 1621 ---UA-UUAA C-UGAGUGAU AGUG-AA--- --GAGUACC( -GUAA-)GGG ---AAA-GC- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- -(-------) ---------- ---------- ---------- ---------- 1801 -aAUG-AAAU AGUU-AAU-C U-<------- ---------- ---------- ---------- 1861 ----->AUAA GCGAAGAUAG Ugaau---<- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------> (-uuuaaaua 2041 --)---aauu AUUAUCUU-G UACCUU(UU- GCAUA)AUGG |GUC-AGCAA GU-----UU- 2101 UAAUUAUUUG CAA------- -------(-- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- -)-------- ---------- 2521 gcu-(-gaaa )--agc---- ---------- ---------- ------aaaG UAAAU-AAUU 2701 AAA-GACCCG AA-ACCUG-A CG-AUCUUAC CAU-GAA-CA GAUU------ ---------- 2761 -(-------- ---------- ---------- ---------- ----uuaag) ---------- 2821 -GAUCGAA-C CA-GUAAUC( GUUGCAA-A) GAUU-UUGGA --UGAUUUG- UGGUAAG-GG 2881 GU(G-AAAU) GCU-AAUC-G A-GUUAGGUG AUAGCU-GGU UGUCC--ACG AA-ACC-AUU 2941 (-UUAA)GAU GG-GC-ACUU CAAA<----- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ------->-- aac|-UAAAU 3061 G|AGGUAC|A GAAAUuu-AU UG-ccu---- ---------- ---------< u--------- 3121 ---------- -caaga-ag- ---------- ---------- ---------- ---------- 3181 ---------- -------(uu u-)------- ---------- ------uuuc -uuguua--- 3241 ---------- ------auag gggauc---u aaa-gauuua ccua>----- --------ag 3301 gCGuuAa-uu AAUCUCGG-- AAUA|-aauu -u-a--aaaa ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- -agu--UU-G -AAGU-AGUU AGACA--AU- UG-GC(-GAU 3481 AAG)GUCAAU AG-UC----A AAAGAG(AAA -CAG)CUC-A GAUCA-A--A -GA-uuuaa- 3541 --AGU-UCCC -CAAUUU-A- AGUUAAGUG- --------AU UUAAAGAUA- GUCUUACUCC 3601 U-U------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- AUUCA-AUAA G<-------- ---------- ---------- 3721 ---------- ---------- ---------- ---------- -->AAUAU-G GGC(UUGGAA 3781 AC-A)-GCCA -UUAU|C(U- AA)G|GAGUA C(--GUAAUA )GU|-UCAC- UUAUCCuGG-AG-A -AA-GGC|-A UCAAAAAU-- ---------- ---------- ----UUAACG 3961 GAUCU----- ---------- ---------- ---------- ---------- ---------- 4021 ---------- ---uAAACUU AAU------- ---------- ---------- ---------- 4081 -------|AC UUAA--ACU| U--U-GG|CA Guauuu---- ---------- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- ---------- ---------- ---------- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- --------(u 4441 aa----)--- --aaaua-CU -G-----GGU AGUGG-AC|- CG-AUCUAUA U---AAAgau 4501 g--------A AGAUG-AACU (uuua---)< ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ------->AG UUU--AUU-G G|AUUU---| AUUAGAUGCG AGAAUGC-UG 4681 AC|AUAAGUA -ACGU-AAA- AAA-AG-GU- (caaau---- ---------- ---------- 4741 ---------- -----)-U-C CUUUU-|CAC C-GAAA-ACU GAA--GGGUU -|----UUGA 4801 CUUAA---AA (----- --)U-U|-AA GUCAAA---- ---------- 4861 ---uaaagua aCAAUCUCUA A-G-C-U--- ---a---(au aaa------- ------)<-- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 >----u---- -----A-GUG AU-GAGUA-- ----(aaucu ---------- ---------- 5041 ---------- ---------- ----)----- |-----|--- ---------u |aa<------ 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ---------- ---------- 5221 ---------- ---------- ---------- ---------- ---------- ---------- 5281 ---------- ---------- ---------- ---------- ---------- ---------- 5341 ---------- ---------- ---------- ---------- ---------- ---------- 5401 ---------- ---------- ------->-- -cggaucuua aaaua----- ---------- 5461 -----(---- ------)--- ---|------ --------|- ---------- -(-----)-- 5521 |--------- ---------- ---------- -----(---- )--------- ---------- 5581 ---- uauuCAGGAA ----AAUuau ccg<------ 5701 ---------- ---------- ---------- ---------- ---------- ---------- 5761 ---------- ---------- ---------- ---------- ---------- ---------- 5821 ---------- ---------- ---------- ---------- ---------- ---------- 5881 ---------- ---------- ---------- ---------- ---------- ---------- 5941 ---------- ---------- ---------- ---------- ---------- ---------- 6001 ---------- ---------- ---------- ---------- ---------- ---------- 6061 ---------- ---------- ---------- ---------- ---------- ---------- 6121 ---------- ---------- ---------- ---------- ---------- ---------- 6181 ---------- ---------- ---------- ---------- ---------- ---------- 6241 ---------- ---------- ---------- ---------- ---------- ---------- 6301 ---------- ---------- ---------- ---------- ---------- ---------- 6361 ---------- ---------- ---------- ---------- ---------- ---------- 6421 ---------- ---------- ------>--u u----a---- ------uuuu aAUUGUA|CC 6481 C--UAAACC- -(GACACU)G G|UCAGU-UA AGA-(GAA-U A-----)-UC UUAAGGUGU| 6541 |---UGAG-A G--AACUAUG -CUUA-AGGA ACUCGGCAAA UUAGCU-CUG UUAC(UUCG- 6601 )GUAUAA-AG AGU|GUUCAU ---------- -----(-uau uuu)<----- ---------- 6661 ---------- ---------- ---------- ---------- ---------- ---------- 6721 ---------- ---------- ---------- ---------- --->------ -------AUG 6781 -AAC|-(uca )a--uaaaGA GAACCCUA|C AA---CUG-U UU(ACUUA)A AA-CACA-GC 6841 ACAUUG|CC- -AAAAU---- ---------- (-uaaaaa-- ------)--- ---------- 6901 AUUAUAGUA- UAA-UGUGUG AGGUCU<--- ---------- ---------- ---------- 6961 ---------- ---------- -------->G CU-CA-AU|G UCCUAU-GGU UAACAA-Uac 7021 --gaacuu-- --(------- ---------- ---------- ---------- ---------- 7081 ---------- ---------- ---------u aac)----ga guuu--ua-C G-GAACCC-| 7141 AG-GAUA-AA U-|AG-C|-G -GCUUU-(AA CUCUG)AGGG UC|C(UAA)- GG-UAGCGAA 7201 AUU-CC-U-U |GUCCGA(-U AAAU-)ACGG UC|CC-GCAU GAAUGACUUA A-UGAUAGGG 7261 UU-------- ---------- -------GCU GUCUCAAGCA CAGA-CU-CA ----GUGAAA 7321 UU|G|UAAUU GC-UG(U-GA AGAUA)CAGU GUU----CCC UCAGCUAGAC GGAAAG-ACC 7381 CUG-GC-|-A GCUUU--ACG AU|--A-GUU AAU--UAUU| gcuuu- au----cuau ----uuuug- uuc---AGUA 7501 UAGAGGuUA- -GUC------ ---------- --<------- ---------- ---------- 7561 ---------- ---------- ---------- ---------- ---------- ---------- 7621 ---------- ---------- ---------> --(---guuu a)-------- -------GAC 7681 AAAAAUGAGA UAuCCUC|c- ----uuaa-- ----a-uaau aaag-aucuu uaaagu---- 7741 -----(---u uaa-)----- ---------- ---------- ---------- ----acu-<- 7801 ---------- ---------- ---------- ---------- ---------- ---------- 7861 ---------- ---------- ---------- ---------- ---------- ---------- 7921 ---------- ---------- ---------- ---------- ---------- ---------- 7981 ---------- ---------- ---------- ---------- ---------- ---------- 8041 ---------- ---------- ---------- ---------- ---------- ---------- 8101 ---------- ---------- ----->UGAC AUUAA-U-UA -AUU-GA-UC GUUUCUGUG( 8161 GGG)CG-CA- G|GCCUCA(- --------UA AAAAAUAAC- )UGAG-GU|A |U|CCUA-|< 8221 gaucuaua-- ---------- ---------- ---------- ---------- ---------- 8281 ---------- ---------- ---------- ---------- ---------- ---------- 8341 ---------- ---------- ---------- ---------- ---------- ->U-AA-UUU 8401 -GU|--cua- ------ (--------- )--------- ---------- ---------- 8701 ---------- ---------- ---------- ----gac|GC (A|UAUAA)G CAU-AAA-UA 8761 G-GU-UAAAC UGAAA-GAC( -uaacaa--- )GUCGC-ACA G--------- ---------- 8821 ---------- --------AU AU-------- ---(GUAA-- -)-------- ----AUA-GG 8881 G|---UUAAA UGAUC-caca uu-gaaacac uaauuuagug UUU(------ ---------- 8941 ---------- ---------- ---------- ---------- ----GUAUGG AA)AA|CAAU 9001 GUGCUCAAU- |GAG-cgAAG UUACGC|CAG G|GAUAACAG |G-UUA-A-U AGAGAGCUAA 9061 AG(U--ACAA )AUCAAAUUC --UCUGUUUG AC-ACCUCGA UGUC|GA--C U|C|AACCU| 9121 AU-C--UCCG GU-UG(--UA -GC)AGAUUG GAAG-GGU|U AGAC(UGUUC )GUCUAUUUA 9181 A--AAGGUU- --ACGUGAGU UGGGUUAAAU CC|GU-C(GU AA)GACAGGA UGGUUCCUAU 9241 CU|ACUGA-G GG|A|<---- ---------- ---------- ---------- ---------- 9301 >AAAAU-AAG CA-AAU-UAA AAU-UUA-UC UU--(UUGU- AC(-GCAA)G GAUU-)UAGA 9361 U--AA-<--- ---------- ---------- -------->U UCAAUCU-CU AGUUUAACUA 9421 U|-UGU-UAC ------- 9541 GUA-GCACGG UAGU--AAAG CCAA-AUUGA ACA------- ---------- -------AAU 9601 ---------- --UAAAAACU (GAAAGC--A UCUCA)A-GU -UU-GAAAUU UA-UUUA--- 9661 -AAGA--G-- -CUUAU-<-- ---------- ---------- ---------- ---------- 9721 ---------- ---------- ---------- ---------- ---------- ---------- 9781 ---------- ---------- ---------- ---------- ---------- ---------- 9841 ---------- ---------- ---------- ---------- ---------- ---------- 9901 ---------- ---------- ------>--| ---------- ---------- --auuaa|GA 9961 AAG(UAGAAA A--)CUUUCc aa-aaggaca uc-------- ---------- ------cuUA 10021 G|GAuguaca ---------- ---------- ---------- ---------- ---------- 10081 ---------- ---aauccuu auuuuaguaa aucauuguuu --------(a gauagauuua 10141 guuaauuuuu uaaccaaagg -)-------- ---------- ---------- ---------- 10201 -----gauua u|c|ucuUUG CUAau-u--- ---------- ---------- ----uuuuaa 10261 auaacuggaa auu------- ---------- ---------- -gccu----- -aauuacaca 10321 auuuuuuu|u ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ||||| // LOCUS mt.P.urtic 10775 bp RNA RNA 17-DEC-1994 DEFINITION Mitochondria Penicillium urticae str. NRRL2159A; S5 protein. ACCESSION D14567 KEYWORDS S5 protein. SOURCE Mitochondria Penicillium urticae str. NRRL2159A. ORGANISM Mitochondria Penicillium urticae. REFERENCE 1 (bases 1 to 6463) AUTHORS Yamamoto,H., Naruse,A. and Sekiguchi,J. TITLE Characterization and nucleotide sequence of the large mitochondrial rRNA gene of Penicillium urticae JOURNAL Unpublished (1993) STANDARD No information COMMENTS Organism information Culture collection: NRRL 2159A Sequence information (bases 1 to 10775) Corresponding GenBank entry: D14567 Submitted (02-MAR-1993) to DDBJ by: Junichi Sekiguchi Department of Applied Biology Shinshu University Faculty of Textile Science & Technology 3-15-1 Tokida, Ueda-shi Nagano 386 Japan Phone: 0268-22-1215 Fax: 0268-22-4079. NCBI gi: 602773 BASE COUNT 1671 a 538 c 746 g 1527 t 6293 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ aaaauuaaac 61 uaauguaaau acauuauagg uauuacaggu uaguguccgg ugguuggucg cuucauuugg 121 guuggagauu guuuauguuc gaaucauaau aaccugaaaa cuaauauagg cuuaauaaua 181 ugggccaaua aa>gauga-u auguac---- --cauaua-- --cc-ucuug a--------- 241 ----gaaa-- ---------- -ucaagacaa guauaUAAAG AAACUAUUA- ----UGGAUG 301 |GUU--AGC| UAU-AUAU-U U|caagaua- ---------- --aguauau| -cuag(ggaa 361 caacauaaa) c|uagaaau- cauagag-aa a-ucuaauua ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---<------ ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- ---------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 ---------- ---------- ---------- ---------- ---------- ---------- 781 ---------- ---------- ---------- -------->- ----uaAGAC |AAAGUGAAU 841 UGA(AAUA)U CUUAGUA--- -ACUUU---- ---------- ---------- ---AGUAAAA 901 GAAAUC(-AA AC)GA-G-AU |UGU-UAU-- -UUGG-U(-G -UCU)UCUGA -AUAGCAAA- 961 -AGCCUA--AAGUAUA ACGGAA(--- ---------- 1561 ---aaaa)AU CUGUUGAAAA ----auAGGG G(AACCU-U) -CCUCUA--A GGCUA-AAAA 1621 ---AA-AUAU A-UAAGCGAU AGAG-UA--- -ACAGUACC( -GUGA-)GGG ---AAAUAC- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- -(-------) ---------- ---------- ---------- ---------- 1801 -cCUG-AAAU AGUA-GUU-U U-<------- ---------- ---------- ---------- 1861 ----->AUAA GCAGCUCAAG Uua-----<- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---aauuuua aauaaa---> (--------- 2041 --)-----ua AUAAGAGC-G UACCUU(UU- GCAUA)AUGG |GUC-AGCAA GU-----UA- 2101 AUUUUAGAUG CAA--guaa- -------(-- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------c aucucuuuuc uaaaaauuau 2461 acauacuaaa uauguaauau uauacaaaaa augauugcua g)-------- ---uua-c-- 2521 ----(----- )-----uuau g-(aaaa--) -a-auga--- -----auuaG UAUCU-AGAA 2701 UUA-GACCCG AA-GGCUA-G UG-AUCUUAC CAU-GGU-CA GGGU------ u--------- 2761 -(-------- ---------- ---------- ---------- ----auaaa) ------a--- 2821 -GCCCGAA-C GG-GUUAUC( GUUGUAA-A) GAUA-UCCGA --UGAACUG- UGGUAAGUUA 2881 GU(G-AAAG) ACA-AAAC-U G-ACUAGU-- AUAGCU-GGU UUUCC--GCG AA-ACC-UAU 2941 (-GUAA)GUA GG-UA-AUUU AAUU<----- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ------->aa CAU|-CUUAG 3061 C|AGGUAC|A GAACUGugau cu-cg----- ---------- ---------< gacaa-uau- 3121 ---------- ---------- ---------- ---------- ---------- ---------- 3181 ---------- --------cu aag------- ---------- ---------- ---------- 3241 aua----uuu gucaacaucg ggggguug-u agugacuuua ccgg>----- ---------a 3301 gag-uau-uU GCACUCGG-- AAGG|-GCAA -A-G---AUG ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- -aau--GU-U -AAAU-AAUC GGACA--UA- GU-GC(-GAU 3481 AAG)GUUGUA UG-UC----U AAAGGG(AAA -CAG)CCC-A GAACA-A--G AGU-UAA--- 3541 --GGU-UCCA -AAAUUA-U- UGUUAAGUG- --------AA AUUAAGGAU- GUUUUUUUUU 3601 A--------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- AAACA-AUCA G<-------- ---------- ---------- 3721 ---------- ---------- ---------- ---------- -->GAAAU-A GGC(UUAGAA 3781 GC-G)-GCCA -UUUU|U(U- GA)A|GACCU C(--GUAACA )GA|-GCAC- UGAUUAuAG-GA-A -AA-AAC|-G CCGAAAAU-- ---------- ---------- ----UUAACG 3961 GAUCU----- ---------- ---------- ---------- ---------- ---------- 4021 ---------- ----AAAUAA UAU------- ---------- ---------- ---------- 4081 -------|AC CGAA--ACC| U--U-GU|AC Acaaa--gaa au---auuaa a-gc-uuuag 4141 uagga-gcuu auuguuauua augagu---- ---------- ---------- ---------- 4201 ---------- ---------- ---------- ---------- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- --aauug-UG -G-----GGU AGCGG-AA|- CA-UUGGAUU A---AAC--- 4501 ---------- ---------- (-------)< --aaaauauu aauauuuuuc uuaaaauauu 4561 aaaaaaaucu cgaauuaaug cacauuaaug aacacaauug caauagauug uguuuuuauc 4621 uacuauauga gaaucu->-- ---------- -|-GUU--a| AAUCCAAGAG AGAAUGC-UG 4681 AC|AUGAGUA -ACGA-AAA- AGG-CU---- (uuu------ ---------- ---------- 4741 ---------- -----)---- AGCCU-|CGC C-UGAA-GCU UAU--GGUU- -|-------- 4801 ---------- (----- --)---|--- ---------- ---------- 4861 ---------- -CGGUGUCUA AAA-A-A--- --auua-(au caaaaga--- ------)<-- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 >-uaau---- -----U-UUG AU-GAc--g- uuuu(auguu (uuuuuauau aau)aauacc 5041 ---------- ---------- ----)aaaac |-----|--- ---------- |---- -uuuuuu-ua auaac----- ---------- 5461 -----(---- ------)--- ---|------ --------|- ---------- -(-----)-- 5521 |--------- ---------- ---------- -----(---- )--------- ---------- 5581 ---- uauacuggua ----aa-aaa aaa--- -uaua----- ---------- -ACCGUA|CC 6481 ua-GAAACU- -(AACUCA)A G|UAAGC-AA GUA-(GAG-A A-----)-UA CAAAGGCGU| 6541 |--UUGAG-A G--AACAAUC -AUUA-AGGA ACUCGGCAAA UUGACU-CUG UACC(UUCG- 6601 )GAAUAA-GG AGG|------ ---------- ---------- ---------- ---------- 6781 ----|A(UCA )U--GAAAUA AUGUUGUA|C GA---CUG-U UU(AAUAA)A AA-CACA-GC 6841 ACUCUG|CA- -AAGAU---- ---------- (--aaaaa-- ------)--- ---------- 6901 AUCAAAGUA- UUG-AGUGUG AUGUCU<--- ---------- ---------- ---------- 6961 ---------- ---------- -------->G CC-CA-AU|G UCGGCU-GGG UAACGG-Auc 7021 u-ACCUUg-a u-(------- ---------- ---------- ---------- ---------- 7081 ---------- ---------- --------ua uua)ac--UG AGGUuuUGAA G-GACACC-| 7141 CC-GAUU-AA U-|GG-C|-G -GCCUU-(AC CUAUG)AGGG UC|C(UAA)- GG-UAGCGAA 7201 AUA-CC-U-U |GGCCGU(-U AAAU-)GCGG UC|CU-GCAU GAAUGACUUA A-CGAUGCAA 7261 CA-------- ---------- -------GCU GUCUCGAUGA UUGU-CU-CA ----GUGAAA 7321 UU|G|GAAUA GC-AG(U-GC AGAUA)CUGU UUA----CCU CUAGAUAGAC GAGAAG-ACC 7381 CUAUGC-|-A GCUUU--ACU GU|--U-ACU AAU--UAUA| gagu-- ga-----aau -uuaggaUG- auuuauAGUG 7501 UAUAAGGUA- -GUU------ ---------- --<------- ---------- ---------- 7561 ---------- ---------- ---------- ---------- ---------- ---------- 7621 ---------- ---------- ---------> --(---guuu a)-------- -------GAU 7681 AAUAAUGAAA CACCuuu|au ucgaauccu- u---a-uaua uacu-c---- ---------- 7741 -----(---- ----)----- ---------- ---------- ---------- --------<- 7801 ---------- ---------- ---------- ---------- ---------- ---------- 7861 ---------- ---------- ---------- ---------- ---------- ---------- 7921 ---------- ---------- ---------- ---------- ---------- ---------- 7981 ---------- ---------- ---------- ---------- ---------- ---------- 8041 ---------- ---------- ---------- ---------- ---------- ---------- 8101 ---------- ---------- ----->--uu aaUGA-U-UA -GAA-GG-CA GUUUAUGCG( 8161 GGG)CA-CA- G|AUCCCA(- --------CA AAAAGUACC- )UGGGUAU|A |U|CCAA-|< 8221 -aguucauau uguaaacuug uauauuuaua uacaaauauu uuaauuuguu cuaauuauua 8281 uuauaauuau acaguuauua uucgauuaaa uucaauaauu auuuuuauuu uu-------- 8341 ---------- ---------- ---------- ---------- ---------- ->A-AG-UAA 8401 -GA|--UU-- uuaa-- (--------- )--------- ---------- ---------- 8701 ---------- ---------- ---------- ----aAA|GU (U|UAAUG)G CUA-aau-cU 8761 U-GC-UUUAC UGUUU-GAC( -cuacaa--- )GUCUA-UCA G--------- ---------- 8821 ---------- --------UC GC-------- ---(GUAA-- -)-------- ----GCG-GG 8881 G|---CAU-A UGAUC-ACAA GA-U------ ---------- GCA(------ ---------- 8941 ---------- ---------- ---------- ---------- ----UUAAGG AA)AG|GUCU 9001 UGG-AUUAU- |AGA-AAAAG UUACGC|UAG G|GAUAACAG |G-CUA-AuU UGCGCAAGAG 9061 AG(U--ACAA )AUUGAGUGC --GCGGUUUG GC-ACCUCGA UGUC|GG--C U|U|AGCUC| 9121 AU-CC-UCAU GCAUG(--CA -GA)AAUCAU GAAG-GGU|U CGAC(UGUUC )GUCGA-UUA 9181 A--AGAGCU- --ACAUGAGC UGGGUUUAAU AC|GU-C(GU GA)GACAGUA UGGUUUCUAU 9241 CU|UCUAG-A GG|A|<---- ---------- ---------- ---------- ---------- 9301 >ACAUA-AAG UA-GAU-UAA AGA-uaG-CC CCu-(UCGU- AC(-GAAA)G GAGUu)GGGU 9361 a--u--<--- ---------- ---------- -------->A UUGAUCU-CU GGUUUACCUG 9421 U|-UGU-UUA ------- 9541 UAG-GCAUGG CAGG--AAAG CUAC-AUCAG UUA------- ---------- -------AAG 9601 ---------- -AUAAGUGUU (GAAAGC--A U-CUA)A-AC -GC-GAAGCA AACUUUA--- 9661 -ugaU--A-- -CUUAUu<-- ---------- ---------- ---------- ---------- 9721 ---------- ---------- ---------- ---------- ---------- ---------- 9781 ---------- ---------- ---------- ---------- ---------- ---------- 9841 ---------- ---------- ---------- ---------- ---------- ---------- 9901 ---------- ---------- ------>--| ------(--- )--------- -----ua|CG 9961 UAG(UAGAAC A--)CUACGa guauaauugu ua------ua uu-----uaa caauu-aaUA 10021 G|GCUUUagu ---------- ---------- ---------- ---------- ---------- 10081 ---------- ---uguaagA AUG------- ---------- --------(- ---------- 10141 ---------- -------aaa a)CAUUu--- ---------- ---------- ---------- 10201 ----uuagau a|u|AAAGUA CUAau-u--- ---------- ---------- ----uuaagu 10261 uuaguauacu aaauauuauu aaauaucauu auaauauuuu auauguuaca auaaa|?gcc 10321 uuuuuagcau aaaaguaaug caaccguuuu guaaucggua gaagugaguu cgauacucgc 10381 auaaggcuaa auauauuuuu uuauuuaaag acccaauggu caagacuggu uaagacauaa 10441 cauuuucacu guuagugcgg gaguucaaau cucccuuggg uuaaaaaaaa uauaauaaaa 10501 gagauuagcu caguugguag agcugucgcu uuacacgcga aaggucaggu guucaaauca 10561 ccuaucucuu aaagcgaauu aauguaauag uaacauauau ggcucauguc cauauuauuu 10621 aggugcaauu ccuaaguucg cuaccaaaga cuauagcuua auugguuaaa gcgaaccacu 10681 caugaugguu ugaguaaaug uucaagucau uuuagucuua uuuaauccga gugcuggaac 10741 ugguagacag ucuuaacuua agcuu~~~~~ ||||| // LOCUS mt.E.nidul 10775 bp RNA RNA 11-JAN-191 DEFINITION Mitochondria Emericella nidulans. ACCESSION No information KEYWORDS No information. SOURCE Mitochondria Emericella nidulans. ORGANISM Mitochondria Emericella nidulans. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 10775) Corresponding GenBank entry: J01390,X06961 same as M24412 at the 5' end BASE COUNT 1178 a 363 c 544 g 1027 t 7663 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~gguga-u auauau---- --cauaua-- --ua-acuug a--------- 241 ----gaaa-- ---------- -ucaaggcua guauaUAAAG AAACUAUUA- ----UGGAUA 301 |AUU--AGC| UAU-AUAU-U A|aagaaau- ---------- ---aaauga| -cuag(-aua 361 a-au-----) c|uaggauu- cuaagaa-aa a-ucaaguaa ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---<------ ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- ---------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 ---------- ---------- ---------- ---------- ---------- ---------- 781 ---------- ---------- ---------- -------->- -----uAAAC |GAAGUGAAU 841 UGA(AAUA)U CUUAGUA--- -ACUUU---- ---------- ---------- ---AGGAAAA 901 GAAAUC(-AA AC)GA-G-AU |UAA-UAU-- -UUAG-U(-G -UAA)ACUAA -AUAUUAAA- 961 -AGCCUA<-a uaacaa(aac ---------- ---------- ---------- ---------- 1021 --------)u uguu------ ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- --->------ 1201 ---------- ---------- ---------- ---------< ---------- ---------- 1261 ---------- ---------- ---------> ---------- ---------- ---|-(---) 1321 ---------- ---------- ---------- ---------- ---------- ---------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- >--AAGUAAA AUGGAU(--- ---------- 1561 ---ucaa)AU CUGUUUGAAU ----aaAGGG G(AACCU-U) -CCUCUA--A GGCUA-AAUA 1621 ---UA-AUAU A-UAAGCGAU AGUG-AA--- --AAGUACC( -GUGA-)GGU ---AAA-AU- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- -(-------) ---------- ---------- ---------- ---------- 1801 --UUG-AAAU AGUA-GUU-U U-<------- ---------- ---------- ---------- 1861 ----->AUAA GCAGCUCAAA U-------<- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- --aaaauuua aauaaaaa-> (--------- 2041 --)------- AUAAGAGC-G UACCUU(UU- GCAUA)AUGG |GUC-AGCAA GU-----UA- 2101 AUUUUAGAUG CAA--guaaa gauaa--(-- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ------ccaa u)----uuaa --auua-uaa 2521 aaa-(-guua )--uga<--- ----uuaaaa agguuauuuu aacuuagaua aaccaauuau 2581 ga-------- ---------- ---------- ---------- ---------- ---------- 2641 ------aaaa augag>---- ---------- ---------- ------uuaG UAUCU-AAAA 2701 UUA-GACCCG AA-GGCUA-G UG-AUCUUAC CAU-GGU-CA GGGU------ u--------- 2761 -(-------- ---------- ---------- ---------- ----auaaa) ------a--- 2821 -GCCCGAA-C GG-GUUAUC( GUUGUAU-A) GAUA-UCCGA --AGAAUUG- UGGUAAGUUA 2881 GU(G-AAAG) ACA-AAAC-U G-ACUAGU-- AUAGCU-GGU UUUCC--GCG AA-ACC-UAU 2941 (-AUGA)GUA GG-UA-AUUU AAUU<----- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ------->aa CAU|-CUUAG 3061 C|AGGUAC|A GAACUGugau cu-cg----- ---------- ---------< gauaauauc- 3121 ---------- ---------- ---------- ---------- ---------- ---------- 3181 ---------- -------(aa uu)------- ---------- ---------- ---------- 3241 gau----uuu aucaacaucg ggggguug-u agugacuuua cugg>----- ---------a 3301 gag-uau-uU GCACUCGG-- AAUG|-GCAA -A-G---AUG ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- -aau--GU-U -GAAU-AAUC GGACA--UA- GU-GC(-GAU 3481 AAG)GUUGUA UG-UC----A AAAGGG(AAA -CAG)CCC-A GAACA-A--G AGU-UAA--- 3541 --GGU-UCCA -AAAUUA-U- UGUUGAGUG- --------AA AUUAAGGAU- GUUUAUUAUU 3601 A--------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- AUACA-AUCA G<-------- ---------- ---------- 3721 ---------- ---------- ---------- ---------- -->GAAAU-A GGC(UUAGAA 3781 GG-G)-GCCA -UUUU|U(U- GA)A|GACCU C(--GUAACA )GA|-GCAC- UGAUUAuAG-UA-A -UA-AAC|-A CCAAAAAU-- ---------- ---------- ----UUAACG 3961 GAUCU----- ---------- ---------- ---------- ---------- ---------- 4021 ---------- ----AAACAA UAU------- ---------- ---------- ---------- 4081 -------|AC CGAA--ACC| U--U-GU|AC Acauau-uau aauaauuaua uaua(uuaau 4141 -----)uaau auauauugu- ---------- ---------- ---------- ---------- 4201 ---------- ---------- ---------- ---------- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- --auaug-UG -G-----GGU AGCGG-AA|- CA-UUGGAUA A---AUA--- 4501 ---------- ---------- (-------)< uuauuuauua uuacuucuaa gauauaauaa 4561 guauaaauau uauuuuaaua auaauaauuu aucaa----- ---------- ---------- 4621 ---------- ------->-- ---------- -|-UAU---| AAUCCAAGAG AGAAUGC-UG 4681 AC|AUGAGUA -ACGA-AAA- AGG------- (aauaa---- ---------- ---------- 4741 ---------- -----)---- --CCU-|CGC C-UUAA-GCU UAUAUGGUAU -|----ug-- 4801 ---------- <--------- --->(----u au)---|--- ---uaa---- ---------- 4861 ---auuuu-- -CGGUGUCUA AAA-A-U--- --auua-(au caaaagg--- ------)<-- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 >-uaau---- -----U-UUG AU-GAu--a- uuua(uauau guac------ ---------- 5041 ---------- ---------- ----)uaaau |-----|--- ---------- |---- -aaaaaa-ua aaacc----- ---------- 5461 -----(---- ------)--- ---|------ --------|- ---------- -(-----)-- 5521 |--------- ---------- ---------- -----(---- )--------- ---------- 5581 ---- gguuCUGGAA ----AA-Uuu uuu--- ---------- ---------- -ACCGUA|CC 6481 ua-GAUACU- -(AUCACA)A G|UAAGC-AA GUA-(GAG-A A-----)-UA CAAAGGCGU| 6541 |--UUGAG-U G--AACAAUC -AUUA-AGGA ACUCGGCAAA UUGACUACCG UAAC(UUCG- 6601 )GGAUAA-GG AGG|------ ---------- ---------- ---------- ---------- 6781 ----|A(ACA )U--AAAAUA AUGUUGUA|C GA---CUG-U UU(AAUAA)A AA-CACA-GC 6841 ACUCUG|CA- -AAGAU---- ---------- (--uaaau-- ------)--- ---------- 6901 AUCAAAGUA- UUG-AGUGUG AUGUCU<--- ---------- ---------- ---------- 6961 ---------- ---------- -------->G CC-CA-AU|G UCGGCA-GGG UAACGA-Auc 7021 u-uccuug-g u-(------- ---------- ---------- ---------- ---------- 7081 ---------- ---------- --------au aua)ac--UA AGGUuuUGAA G-GACACC-| 7141 CC-GAUA-AA U-|GG-C|-G -GCCUU-(AU CUAUG)AGGG UC|C(UAA)- GG-UAGCGAA 7201 AUA-CC-U-U |GGCCGU(-U AAAU-)GCGG UC|CU-GCAU GAAUGACAUA A-CGAUACAA 7261 CA-------- ---------- -------GCU GUCUCGAUGA UUGU-CU-CA ----GUGAAA 7321 UU|G|GAAUA GC-AG(U-GC AGAUA)CUGU UUA----CCU CUAGAUAAAC GAGAAG-ACC 7381 CUAUGC-|-A GCUUU--ACU GU|--U-ACC AGU--UGCA| aagu-- ua-----aau uuuaggaUG- UuuucgAGAG 7501 UAUAAGGUA- -GUU------ ---------- --<------- ---------- ---------- 7561 ---------- ---------- ---------- ---------- ---------- ---------- 7621 ---------- ---------- ---------> --(---gaaa -)-------- -------GAU 7681 AACAAUGAAA CACCuuu|au ucguuuccu- u---a-uaua ugcu-u---- ---------- 7741 -----(---- ----)----- ---------- ---------- ---------- --------<- 7801 ---------- ---------- ---------- ---------- ---------- ---------- 7861 ---------- ---------- ---------- ---------- ---------- ---------- 7921 ---------- ---------- ---------- ---------- ---------- ---------- 7981 ---------- ---------- ---------- ---------- ---------- ---------- 8041 ---------- ---------- ---------- ---------- ---------- ---------- 8101 ---------- ---------- ----->--uu gaAGA-U-UG -GAA-GG-CA GUUUAUGCG( 8161 GGG)CA-CA- G|AUCCCA(- --------CA AAAAGUACA- )UGGGUAU|A |U|CCAA-|< 8221 -aguucauau uguaaauuug uaa-uuuuau uacaaauauu uuaauuuguu auauuuauuu 8281 uuauaaauau acaguua-uu guuaaauuaa guucaauauu uauuuuuauc u--------- 8341 ---------- ---------- ---------- ---------- ---------- ->A-AG-UAA 8401 -GA|--UU-- uuaa-- (--------- )--------- ---------- ---------- 8701 ---------- ---------- ---------- ----aAA|GU (U|UAAUG)G CUA-AAU-CU 8761 U-GC-UUUAU CGUUU-GAC( -cuacaa--- )GUUCA-UCA G--------- ---------- 8821 ---------- --------UU GC-------- ---(GUAA-- -)-------- ----GCG-GG 8881 G|---CAU-A UGAUC-ACAA GA-U------ ---------- GCA(------ ---------- 8941 ---------- ---------- ---------- ---------- ----UUAAGG AA)AG|GUCU 9001 UGG-AUUAU- |AGA-aAAAG UUACGC|UAG G|GAUAACAG |G-CUA-AuU UGCGCAAGAG 9061 AG(U--ACAA )AUUGAGUGC --GCGGUUUG GC-ACCUCGA UGUC|GG--C U|U|AGCUC| 9121 AU-CC-ACAU GAAUG(--CA -AA)AAUCAU GAAG-GGU|U CGAC(UGUUC )GUCGA-UUA 9181 A--AGAGCU- --ACAUGAGC UGGGUUUAAU AC|GU-C(GU GA)GACAGUA UGGUUUCUAU 9241 CU|UCUAG-A GG|G|<---- ---------- ---------- ---------- ---------- 9301 >AAUUA-AAG UA-GAA-UAA AGA-uaG-CC CCu-(UCGU- AC(-GAAA)G GAGUu)GGGU 9361 a--u--<--- ---------- ---------- -------->A UUGACCU-AU GGUUUACCUA 9421 U|-UGU-UUA ------- 9541 UAG-GCAUGG UAGG--AAGG CUAC-GUCAG UUA------- ---------- -------AAG 9601 ---------- -AUAAGUGCU (GAAAGC--A U-UUA)A-GC -GC-GAAGCU UACUUUA--- 9661 -ggaU--A-- -CUUUAa<-- ---------- ---------- ---------- ---------- 9721 ---------- ---------- ---------- ---------- ---------- ---------- 9781 ---------- ---------- ---------- ---------- ---------- ---------- 9841 ---------- ---------- ---------- ---------- ---------- ---------- 9901 ---------- ---------- ------>--| ------(--- )--------- -----aa|CG 9961 UAG(UAGAAC A--)CUACGa guaucauuaa aaaaauauua uuuuuuuuuu uaauguaaUA 10021 G|gcuu-agu ---------- ---------- ---------- ---------- ---------- 10081 ---------- ---uguacuA AUC------- ---------- --------(- ---------- 10141 ---------- -------uua a)GAUUu--- ---------- ---------- ---------- 10201 ----uuagac a|u|aaaugA CUAau-u--- ---------- ---------- ----uauaaa 10261 aaacuaaau- ---------- ---------- ---------- ---aua---- -auauauauc 10321 gaaaa---|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ||||| // LOCUS mt.P.chrys 10775 bp RNA RNA 11-JAN-191 DEFINITION Mitochondria Penicillium chrysogenum. ACCESSION No information KEYWORDS No information. SOURCE Mitochondria Penicillium chrysogenum. ORGANISM Mitochondria Penicillium chrysogenum. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 10775) Corresponding GenBank entry: S56867,D13859 LOCUS S56867 5360 bp DNA PLN 25-JUN-1993 DEFINITION 1-rRNA...tRNA-Thr {group IA intron} [Penicillium chrysogenum, NRRL1951, Mitochondrial, 3 genes, 5360 nt] ACCESSION S56867 D13859 KEYWORDS . SOURCE Penicillium chrysogenum NRRL1951 ORGANISM Mitochondrion Penicillium chrysogenum Unclassified. REFERENCE 1 (bases 1 to 5360) AUTHORS Naruse,A., Yamamoto,H. and Sekiguchi,J. TITLE Nucleotide sequence of the large mitochondrial rRNA gene of Penicillium chrysogenum. JOURNAL Biochim. Biophys. Acta 1172, 353-356 (1993) STANDARD full automatic COMMENT This entry [NCBI gibbsq 127438] was created by the journal scanning component of NCBI/GenBank at the National Library of Medicine. This sequence comes from Fig. 1. FEATURES Location/Qualifiers rRNA join(143..2977,4656..5236) /note="Description: 1-rRNA" tRNA 5239..5309 /note="Description: tRNA-Thr" CDS 3315..4514 /note="Description: ribosomal protein S5 homolog; For the protein sequence (NCBI gibbsq 127439): Method: conceptual translation supplied by author. This sequence comes from Fig. 1." /codon_start=1 /translation="MLNIIKSKLNTTYKKKGLNDSSIAIYNRDIIPAVRNWKSSIYAY NKNAINLIPIKSKYVMKLIKAYFNLYNLQLESLLRKNRLRRRFRKISTNRIFISDGEF KHTNDKVNITLYVYNKQKLNYLLKLKKRYLTLFKKAKFARKLKLIKNIGLNILCKHKQ KSILLSNLLPKYNTQVNTAQNIYYLRFIKKSFKRLKFYMYYKQMLYINKAKFENTYLQ GLISLVKNIFNKNVEFNIINLKYFYFNSNIFTQPLELKLKKKRNVLRYLKVLIRKAKI KNVKLAEKSKKFFNLNIFNSDNFLQQDNTKSKYLKKIILSDLKYKRVSGVRLEAAGRL TRRFSASRSQRRTKYKGNLENVYSSFKGYPTPMLRGNDKANLQYTVINSTSRVGAFGV KGWVSST" BASE COUNT 2136 a 582 c 799 g 1843 t ORIGIN BASE COUNT 1354 a 424 c 603 g 1177 t 7217 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ caaauuaaau 61 uaauguaaau acauuauagg uuuuacaggu uaguguccgg ugguuggucg cuucauuugg 121 guuggagauu guuuauguuc gaaucauaau aaccugauaa uuaauauagg uauaauuaua 181 uauaccaaua ua>gauga-u auguau---- --cauaua-- --ca-ucuug a--------- 241 ----gaaa-- ---------- -ucaagacaa guauaUAAAG AAACUAUUA- ----UGGAUG 301 |GUU--AGC| UAU-AUAU-U U|caagaua- ---------- ----uugau| -cuag(aaaa 361 auauaaa--) c|uagaaau- cauagag-aa a-ucuaauua ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---<------ ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- ---------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 ---------- ---------- ---------- ---------- ---------- ---------- 781 ---------- ---------- ---------- -------->- ----uaAGAC |AAAGUGAAU 841 UGA(AAUA)U CUUAGUA--- -ACUUU---- ---------- ---------- ---AGUAAAA 901 GAAAUC(-AA AC)GA-G-AU |UGU-UAU-- -UUGG-U(-G -UCU)UCUGA -AUAGCAAA- 961 -AGCCUU------ 1201 ---------- ---------- ---------- ---------< ---------- ---------- 1261 ---------- ---------- ---------> ---------- ---------- ---|-(---) 1321 ---------- ---------- ---------- ---------- ---------- ---------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- >--AAGUAUA ACGGAA(--- ---------- 1561 ---aaaa)AU CUGUUGAAAA ----auAGGG G(AACCU-U) -CCUCUA--A GGCUA-AAAA 1621 ---AA-AUAU A-UAAGCGAU AGAG-UA--- -ACAGUACC( -GAGA-)GGG ---AAAUAC- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- -(-------) ---------- ---------- ---------- ---------- 1801 -cCUG-AAAU AGUA-GUU-U U-<------- ---------- ---------- ---------- 1861 ----->AUAA GCAGCUCAAG Uua-----<- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---aaauuua aauaaa---> (--------- 2041 --)-----ua AUAAGAGC-G UACCUU(UU- GCAUA)AUGG |GUC-AGCAA GU-----UA- 2101 AUUUUAGAUG CAA--guaa- -------(-- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---caucucu uuuauaagca u)-------- ---uua-c-- 2521 ----(----- )-----uuau g-(aaaa--) -a-auga--- -----auuaG UAUCU-AGAA 2701 UUA-GACCCG AA-GGCUA-G UG-AUCUUAC CAU-GGU-CA GGGU------ u--------- 2761 -(-------- ---------- ---------- ---------- ----auaaa) ------a--- 2821 -GCCCGAA-C GG-GUUAUC( GUUGUAA-A) GAUA-UCCGA --UGAACUG- UGGUAAGUUA 2881 GU(G-AAAG) ACA-AAAC-U G-ACUAGU-- AUAGCU-GGU UUUCC--GCG AA-ACC-UAU 2941 (-GUAA)GUA GG-UA-AUUU AAUU<----- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ------->aa CAU|-CUUAG 3061 C|AGGUAC|A GAACUGugau cu-cg----- ---------- ---------< gacaa-uau- 3121 ---------- ---------- ---------- ---------- ---------- ---------- 3181 ---------- --------uu aau------- ---------- ---------- ---------- 3241 aua----uuu gucaacaucg ggggguug-u agugacuuua ccgg>----- ---------a 3301 gag-uau-uU GCACUCGG-- AAGG|-GCAA -A-G---AUG ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- -aau--GU-U -AAAU-AAUC GGACA--UA- GU-GC(-GAU 3481 AAG)GUUGUA UG-UC----U AAAGGG(AAA -CAG)CCC-A GAACA-A--G AGU-UAA--- 3541 --GGU-UCCA -AAAUUA-U- UGUUAAGUG- --------AA AUUAAGGAU- GUUUUUUUUU 3601 A--------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- AAACA-AUCA G<-------- ---------- ---------- 3721 ---------- ---------- ---------- ---------- -->GAAAU-A GGC(UUAGAA 3781 GC-G)-GCCA -UUUU|U(U- GA)A|GACCU C(--GUAACA )GA|-GCAC- UGAUUAuAG-GA-A -AA-AAC|-G CCGAAAAU-- ---------- ---------- ----UUAACG 3961 GAUCU----- ---------- ---------- ---------- ---------- ---------- 4021 ---------- ----AAAUAA UAU------- ---------- ---------- ---------- 4081 -------|AC CGAA--ACC| U--U-GU|AC Acaaa--uaa aa---auuaa a-gc(guuau 4141 a----)gcuu ---------a aua------- ---------- ---------- ---------- 4201 ---------- ---------- ---------- ---------- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- --uuuug-UG -G-----GGU AGCGG-AA|- CA-UUGGAUU A---AAC--- 4501 ---------- ---------- (-------)< --aaaauauu aauauuuuuc uuaaaauauu 4561 aaagaucuag caucu----- ---------- ---------- ---------- ---------- 4621 ---------- ------->-- ---------- -|-GUU--a| AAUCCAAGAG AGAAUGC-UG 4681 AC|AUGAGUA -ACGA-AAA- AGG-CU---- (uuu------ ---------- ---------- 4741 ---------- -----)---- AGCCU-|CGC C-UGAA-GCU UAU--GGUU- -|-------- 4801 ---------- (----- --)---|--- ---------- ---------- 4861 ---------- -CGGUGUCUA AAA-A-A--- --auua-(au caaaaga--- ------)<-- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 >-uaau---- -----U-UUG AU-GAc--g- uuuu(guau( aagaua)aua cc-------- 5041 ---------- ---------- ----)aaaac |-----|--- ---------- |---- -uauua--ua auaua----- ---------- 5461 -----(---- ------)--- ---|------ --------|- ---------- -(-----)-- 5521 |--------- ---------- ---------- -----(---- )--------- ---------- 5581 ---- uauacuggaa ----aa--ua aua<------ 5701 ---------- ---------- ---------- ---------- ---------- ---------- 5761 ---------- ---------- ---------- ---------- ---------- ---------- 5821 ---------- ---------- ---------- ---------- ---------- ---------- 5881 ---------- ---------- ---------- ---------- ---------- ---------- 5941 ---------- ---------- ---------- ---------- ---------- ---------- 6001 ---------- ---------- ---------- ---------- ---------- ---------- 6061 ---------- ---------- ---------- ---------- ---------- ---------- 6121 ---------- ---------- ---------- ---------- ---------- ---------- 6181 ---------- ---------- ---------- ---------- ---------- ---------- 6241 ---------- ---------- ---------- ---------- ---------- ---------- 6301 ---------- ---------- ---------- ---------- ---------- ---------- 6361 ---------- ---------- ---------- ---------- ---------- ---------- 6421 ---------- ---------- ------>--- -aaua----- ---------- -ACCGUA|CC 6481 ua-GAAACU- -(AACUCA)A G|UAAGC-AA GUA-(GAG-A A-----)-UA CAAAGGCGU| 6541 |--UUGAG-A G--AACAAUC -AUUA-AGGA ACUCGGCAAA UUGACU-CUG UACC(UUUG- 6601 )GAAUAA-GG AGG|------ ---------- ---------- ---------- ---------- 6781 ----|A(UCA )U--GAAAUA AUGUUGUA|C GA---CUG-U UU(AAUAA)A AA-CACA-GC 6841 ACUCUG|CA- -AAGAU---- ---------- (--aaaaa-- ------)--- ---------- 6901 AUCAAAGUA- UUG-AGUGUG AUGUCU<--- ---------- ---------- ---------- 6961 ---------- ---------- -------->G CC-CA-AU|G UCGGCU-GGG UAACGG-Auc 7021 u-ACCUUg-a u-(------- ---------- ---------- ---------- ---------- 7081 ---------- ---------- --------ua uua)ac--UG AGGUuuUGAA G-GACACC-| 7141 CC-GAUU-AA U-|GG-C|-G -GCCUU-(AC CUAUG)AGGG UC|C(UAA)- GG-UAGCGAA 7201 AUA-CC-U-U |GGCCGU(-U AAAU-)GCGG UC|CU-GCAU GAAUGAUUUA A-CGAUGCAA 7261 CA-------- ---------- -------GCU GUCUCGAUGA UUGU-CU-CA ----GUGAAA 7321 UU|G|GAAUA GC-AG(U-GC AGAUA)CUGU UUA----CCU CUAGAUAGAC GAGAAG-ACC 7381 CUAUGC-|-A GCUUU--ACU GU|--U-ACU AAU--UAUA| gagu-- ga-----aau uuuaggaUG- auuuauAGUG 7501 UAUAAGGUA- -GUU------ ---------- --<------- ---------- ---------- 7561 ---------- ---------- ---------- ---------- ---------- ---------- 7621 ---------- ---------- ---------> --(---guug a)-------- -------GAU 7681 AAUAAUGAAA CACCuuu|au ucgaauccu- u---a-uaua uacu-c---- ---------- 7741 -----(---- ----)----- ---------- ---------- ---------- --------<- 7801 ---------- ---------- ---------- ---------- ---------- ---------- 7861 ---------- ---------- ---------- ---------- ---------- ---------- 7921 ---------- ---------- ---------- ---------- ---------- ---------- 7981 ---------- ---------- ---------- ---------- ---------- ---------- 8041 ---------- ---------- ---------- ---------- ---------- ---------- 8101 ---------- ---------- ----->--uu aaUGA-U-UA -GAA-GG-CA GUUUAUGCG( 8161 GGG)CA-CA- G|AUCCCA(- --------CA AAAAGUACC- )UGGGUAU|A |U|CCAA-|< 8221 -aguucauau uguaaacuug uauauuuaua uacaaauauu uuaauuuguu cuaauuauua 8281 uuauaauuau acaguuauua uucgauuaaa uuccacaauu auuuuuuauu uu-------- 8341 ---------- ---------- ---------- ---------- ---------- ->A-AG-UAA 8401 -GA|--UU-- uuaa-- (--------- )--------- ---------- ---------- 8701 ---------- ---------- ---------- ----aAA|GU (U|UAAUG)G CUA-AAU-CU 8761 U-GC-UUUAC UGUUU-GAC( -cuacaa--- )GUCUA-UCA G--------- ---------- 8821 ---------- --------UC GC-------- ---(GUAA-- -)-------- ----GCG-GG 8881 G|---CAU-A UGAUC-ACAA GA-U------ ---------- GCA(------ ---------- 8941 ---------- ---------- ---------- ---------- ----UUAAGG AA)AG|GUCU 9001 UGG-AUUAU- |AGA-AAAAG UUACGC|UAG G|GAUAACAG |G-CUA-AuU UGCGCAAGAG 9061 AG(U--ACAA )AUUGAGUGC --GCGGUUUG GC-ACCUCGA UGUC|GG--C U|U|AGCUC| 9121 AU-CC-UCAU GCAUG(--CA -GA)AAUCAU GAAG-GGU|U CGAC(UGUUC )GUCGA-UUA 9181 A--AGAGCU- --ACAUGAGC UGGGUUUAAU AC|GU-C(GU GA)GACAGUA UGGUUUCUAU 9241 CU|UCUAG-A GG|A|<---- ---------- ---------- ---------- ---------- 9301 >ACAUA-AAG UA-GAU-UAA AGA-UAG-CC CCu-(UCGU- AC(-GAAA)G GAGUu)GGGU 9361 a--u--<--- ---------- ---------- -------->A UUGAUCU-CU GGUUUACCUG 9421 U|-UGU-UUA ------- 9541 UAG-GCAUGG CAGG--AAAG CUAC-AUCAG UUA------- ---------- -------AAG 9601 ---------- -AUAAGUGUU (GAAAGC--A U-CUA)A-AC -GC-GAAGCA AACUUUA--- 9661 -UGAU--A-- -CUUUUa<-- ---------- ---------- ---------- ---------- 9721 ---------- ---------- ---------- ---------- ---------- ---------- 9781 ---------- ---------- ---------- ---------- ---------- ---------- 9841 ---------- ---------- ---------- ---------- ---------- ---------- 9901 ---------- ---------- ------>--| ------(--- )--------- -----ua|CG 9961 UAG(UAGAAC A--)CUACGa gcauaauugu -------uua auu------a caauu-aaUA 10021 G|GCUUUagu ---------- ---------- ---------- ---------- ---------- 10081 ---------- ---uguaagA AUG------- ---------- --------(- ---------- 10141 ---------- -------aua a)CAUUu--- ---------- ---------- ---------- 10201 ----uuagau a|u|AAAGUA CUAau-u--- ---------- ---------- ----uaaaaa 10261 aaaaaguaua cuaaauauua uuuaauauca uuauaauauu uuuu------ -uuauauauu 10321 acaaua--|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ||||| // LOCUS mt.N.crass 10775 bp RNA RNA 11-JAN-191 DEFINITION Mitochondria Neurospora crassa. ACCESSION No information KEYWORDS No information. SOURCE Mitochondria Neurospora crassa. ORGANISM Mitochondria Neurospora crassa. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 10775) Corresponding GenBank entry: X55443 Neurospora crassa mitochondrial LSU rRNA >From Helmut Bertrand Nucleic Acids Research "For the Record", in press; X55443 BASE COUNT 1216 a 499 c 684 g 1066 t 7310 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~aaa-u guaauggaua uaaagcuuau guuuauauau ---------- 241 ---auagac- ---------- --auauauaa guauaUAAAG AGACUACUA- ----CCAAUA 301 |GCU-acAC| UAU-GUAU-U A|aggaga-- ---------- -------gu| -auaa(-cuu 361 aau------) u|uauguuu- augauuu|ua u-cauacccc uaaaaaugac accgaggagc 421 a--------- ---------a gggucgg-gu uagcauc-cu gguucguaca c(cuug)gug 481 accuaggcua guaccag-gu cccccucuaa ggga(cuug) ucccccucua agggac-uug 541 cgucgguccu a(ucc)uagg ccg- --uaauAAAC |GAAGUGAAU 841 UGA(AAUA)U CUUAUUA--- -ACUUC---- ---------- ---------- ---AGGAAAA 901 GAAAUC(-AA AC)GA-G-AU |UCU-AUGA- -UUAG-U(-G -UGA)ACGAA -AAUAGAGC- 961 -AGCCUA<-- ---------- ---------- ---------- ---------- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- --->------ 1201 ---------- ---------- ---------- ---------< ---------- ---------- 1261 ---------- ---------- ---------> ---------- ---------- ---|-(---) 1321 ---------- ---------- ---------- ---------- ---------- --<-uuaaaa 1381 u--------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- ---AAGUAAA AUGGCU(--- ---------- 1561 ---uuaa)AG CUGUUUGAAU --auugUGGG G(AACCU-U) -CCUCAA--A GGCUA-AAUA 1621 ---UA-AUAC A-UGAGUUAC AGAG-AA--- --AAGUACC( -GUGA-)GGG ---AAA-GC- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- -(-------) ---------- ---------- ---------- ---------- 1801 -uUUG-AAAU AGUA-GUU-U U-<------- ---------- ---------- ---------- 1861 ----->AUAA GCAGCUCAAG C-------<- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------> (aauaagaaa 2041 --)------- GCGAGAGC-G UACCUU(UU- GCAUA)AUGG |GUC-ACCAA GU-----UA- 2101 AUUUUAGAUG CGA--gcgaa u-uuauu(ua u--------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------g 2341 uuuuuacuga uuaaacaaua uaaugaauca uaauuauuuu uguaacgagu auuaguauua 2401 aaucuuaauu uaauauuagu auaaguuuuc aguauggagg auacauagca uaaucuaugc 2461 agccagccaa uaauuggauu uccaauccaa uuucgguaau a)--aauaga --ugug-cau 2521 agu-(-uaaa )--ccgucau ua(-aaa--) ua-auga--- ------auaG UGUCU-AAAG 2701 UUA-GACCCG AA-GCCUG-G UG-AUCUUAC UAU-AGU-CA GGAC------ u--------- 2761 -(-------- ---------- ---------- ---------- ----auaaa) ------g--- 2821 -GUCCGAA-C GG-GUUAUC( GUUGCAA-A) GAUA-UCCGA --AGAACUA- UGGUAAGCGA 2881 GU(G-AAAG) ACA-ACAC-U G-ACUAGG-- AUAGCU-GGU UUUCU--GCG AA-ACC-UAU 2941 (-AAUA)GUA GG-CA-AUUU AAGU<----- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ------->aa CAU|-CUUAG 3061 U|AGGUAC|A GAACUua-AU CU-ca----- ---------- ---------< gacaa-gaug 3121 uaga-----u uuucauaccu a--------- ---------- ---------- ---------- 3181 ---------- -------(ug uu)------- ---------- ------uagg uaugaaaugc 3241 auuuuuuuuu guauacaucg ggggaucg-u gaagauuuua ucgg>----- ---------u 3301 gAG-uAu-gu AGACUCGG-- AAUG|-ACAA -A-G---AUG ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- -aau--CU-U -GAAU-AAUC AGACA--UA- GA-AU(-GAU 3481 AAG)GUUGUA UG-UC----A AAAGGG(AAA -CAG)CCC-A GAACA-A--G AGU-UAA--- 3541 --GGU-UCCA -AAAUUA-U- UAUUAAGUG- --------AA AUAAAGAAA- GUUUUUAUAU 3601 A--------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- AGUCG-ACAA G<-------- ---------- ---------- 3721 ---------- ---------- ---------- ---------- -->AAGAU-G GGC(UUGGAA 3781 GC-A)-GCCA -UAAU|U(U- AA)A|GAUCU C(--GUAACA )GA|-GCAC- UUGUUAAUC-UU-A -AA-AGC|-A UCGAAAAU-- ---------- ---------- ----UUAACG 3961 GAUCU----- ---------- ---------- ---------- ---------- ---------- 4021 ---------- ----AAAUAA UAU------- ---------- ---------- ---------- 4081 -------|AC CGAA--ACC| U--U-GU|CC Au-------- auguaacauu agua(auaau 4141 augc)uauua auguuauuug ---------- ---------- ---------- ---------- 4201 ---------- ---------- ---------- ---------- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- --------(- 4441 ------)--- ------a-UG -G-----GGU AGCAG-AA|- CG-UUGAGUG A---AUCuua 4501 g--------A UuUUU-uuUU (uau----)< ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ------->AA cuA--AAu-A U|AGAUGAU| AACUCAAGUG AGAAUGG-UG 4681 AC|AUGAGUA -ACAA-AAA- AGAGUU-UA- (agguaccu- ---------- --(aaa)--- 4741 ------aggu aucuu)-A-G AGUCU-|CGC C-UAAA-GCU UAU--GGCU- -|----ac-- 4801 ---------- ---------- ----(--guc aa)---|--- ---gua---- ---------- 4861 ---a------ -CGGCCUCUA A-GUU-U--- AUAAUC-(ug aa-------- ------)<-- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 >-GAUU---A U----G-ACG AU-GAGAAa- auaa(cgcgc (agaa)gugc g--------- 5041 ---------- ---------- ----)cugcu |-----|uug a--uacuu-- |--<------ 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ---------- ---------- 5221 ---------- ---------- ---------- ---------- ---------- ---------- 5281 ---------- ---------- ---------- ---------- ---------- ---------- 5341 ---------- ---------- ---------- ---------- ---------- ---------- 5401 ---------- ---------- ------->-- ---------- ---------- ---------- 5461 -----(---- ------)--- ---|------ --------|- ---------- -(-----)-- 5521 |--------- ---------- ---------- -----(---- )--------- ---------- 5581 --<------- ---------- ---------- ---------- ---------- ---------- 5641 ---------- ---------- ------->-- ---------- ---------- ------ -------aa- ugacaa---- -ACCGUA|CC 6481 UA-GAAUCU- -(GAAACA)A G|UAAGC-UA GUA-(GAG-A A-----)-UA CGAAGGCGU| 6541 |gaAUGAG-A U--AACAAUC -AUAA-AGGA ACUCGGCAAA CUAACUACCG UAAC(UUAG- 6601 )GGAUAA-GG AGA|gcucau uagucucg-- -----(auua aua)<----- ---------- 6661 ---------- ---------- ---------- ---------- ---------- ---------- 6721 ---------- ---------- ---------- ---------- --->----cg aguaaaaagg 6781 aaga|A(GCA )U--GGAAUA UUGUUGUA|C GA---CUG-U UU(AAUUA)A AA-CAAA-GC 6841 ACUUUG|CAa aAAGAC---- ---------- (--gauaa-- ------)--- ---------- 6901 GUCUAAGUA- UUG-AGUGUG AUUUCU<--- ---------- ---------- ---------- 6961 ---------- ---------- -------->G CC-CG-AU|G CCGGCU-GGU UAACGA-Auu 7021 u-ucuaaa-u u-(------- ---------- ---------- ---------- ---------- 7081 ---------- ---------- ------gaaa aaa)aa--uu ugguuucaGA G-GAACCC-| 7141 CC-GGUU-AA U-|GG-C|-G -GCCUU-(AG C-GUG)AGGG UC|C(UAA)- GG-UAGCGAA 7201 AUG-CC-U-U |GGCCGU(-U AAAU-)GCGG UC|UU-GCAU GAAUGAUGUA A-CGAUACAA 7261 CA-------- ---------- -------GCU GUCUCUAUGA UUGA-CU-CA ----GUGAAA 7321 UU|G|GAAUA AC-UG(U-GC AGAUA)CAGU UUA----CCU CUAGUUAGAC GAGAAG-ACC 7381 CUAUGC-|-A GCUUU--ACU GU|--U-ACU AAU--UAUU| aauac- ga-----uuc -ugaaaauu- ucc---AGUG 7501 UAAAAGGUA- -AUC------ ---------- --<------- ---------- ---------- 7561 ---------- ---------- ---------- ---------- ---------- ---------- 7621 ---------- ---------- ---------> --(---gaua a)-------- -------GAU 7681 AUAAUUGAAA CACCUUU|a- ----uuuuu- c-u----auc guau-uauua aacc-uu--- 7741 a----(---a au--)----u ---------- ---------- ---------- ---aagg-<- 7801 ---------- ---------- ---------- ---------- ---------- ---------- 7861 ---------- ---------- ---------- ---------- ---------- ---------- 7921 ---------- ---------- ---------- ---------- ---------- ---------- 7981 ---------- ---------- ---------- ---------- ---------- ---------- 8041 ---------- ---------- ---------- ---------- ---------- ---------- 8101 ---------- ---------- ----->-AAC AAUUG-U-UA -GAA-GA-CA GUUUAUGCG( 8161 GGG)CA-CA- G|GCCCCA(- --------UA AAGAGUAAA- )UGGGUGU|G |U|CUAA-|< 8221 aauuuauaaa uuuauguuug caauuuuuua uagugauuau auaucaaauc aucuuuaugc 8281 uauucauaga guguauuuau uauauuccuu ggguacagua uaaaaauuau auauguauua 8341 auuuacauau auuuuuucua agaaauu--- ---------- ---------- ->A-GG-UAA 8401 -GA|--UUu- ------ (--------- )--------- ---------- ---------- 8701 ---------- ---------- ---------- ----aAA|GC (U|UAAUG)G CUU-AAU-CU 8761 U-GC-CUUAC UGUUU-GAU( -uaacaacaa )AUCUU-ACA G--------- ---------- 8821 ---------- --------UC GC-------- ---(GUAA-- -)-------- ----GCG--G 8881 G|---CAU-A GGAUC-ACAA GA-U------ ---------- ACA(------ ---------- 8941 ---------- ---------- ---------- ---------- ----AAAAGG AA)AG|AUCU 9001 UGGauuuuu- |gg--aAAAG CUACGC|UAG G|GAUAACAG |G-CUA-AuU UGCGCAAGAG 9061 UG(U--ACAA )AAUGAGUGC --GCGGUUUG GC-ACCUCGA UGUC|GG--C U|U|GACUA| 9121 AU-CC-UCAU GGAUG(--CA -GA)AACUAU GUAG-GGU|A CGAC(UGUUC )GUCGA-UUA 9181 A--AAAGUU- --ACAUGAGC UGGGUUAAAU AG|CU-C(GU GA)GACAGUA UGGUUUCUAU 9241 CU|UCUAG-A GG|G|<---- ---------- ---------- ---------- ---------- 9301 >AAUUA-GAA UA-UAA-UAA GGA-uua-ac cu--(UUGU- AC(-GAAA)G GAACa)uggg 9361 g--ua-A UUAACCU-CU GGUUUACCUG 9421 U|-UGU-UUA ------- 9541 UAA-GCAUGG CACC--AAAG CUAA-GUUAG UCA------- ---------- -------AAA 9601 ---------- -AUAAGUGCU (GAAAGC--A U-AUA)G-GC -AC-GAAAUU UACCUUA--- 9661 -AGAU--A-- UUUCUU-<-- ---------- ---------- ---------- ---------- 9721 ---------- ---------- ---------- ---------- ---------- ---------- 9781 ---------- ---------- ---------- ---------- ---------- ---------- 9841 ---------- ---------- ---------- ---------- ---------- ---------- 9901 ---------- ---------- ------>--| ---------- ---------- aaauaua|CG 9961 UAA(GAAAAU A--)UUACGU U--------- ---------- ---------- ------aaUA 10021 G|GCuuaguu ---------- ---------- ---------- ---------- ---------- 10081 ---------- ---uguaaua auc------- ---------- --------(- ---------- 10141 ---------- -------uag a)gauuu--- ---------- ---------- ---------- 10201 ----uaagga a|c|uaaGUA CUAau-u--- ---------- ---------- ----u-uaua 10261 -aaaaacuga au-------- ---------- ---------g auuaauauau c--uuacauu 10321 uuc-----|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ||||| // LOCUS mt.P.anser 10775 bp RNA RNA 11-JAN-191 DEFINITION Mitochondria Podspora anserina. ACCESSION No information KEYWORDS No information. SOURCE Mitochondria Podspora anserina. ORGANISM Mitochondria Podspora anserina. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 10775) Corresponding GenBank entry: X14735,X55026 LOCUS X14735 9377 bp UNA 15-MAR-1990 DEFINITION Podospora anserina mtDNA for large subunit rRNA. ACCESSION X14735 REFERENCE 1 (bases 1 to 9377) AUTHORS Cummings,D.J., Domenico,J.M. and Nelson,J. TITLE DNA sequence and secondary structures of the large subunit rRNA coding regions and its two class I itrons of mitochondrial DNA from Podospora anserina JOURNAL J. Mol. Evol. 28, 242-255 (1989) STANDARD unannotated staff_entry BASE COUNT 3391 a 1300 c 1707 g 2979 t ORIGIN BASE COUNT 1450 a 613 c 817 g 1266 t 6629 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~uua-u aaaa------ -auauaaaug aauug-uaua uaucuu---- 241 -uuauauuau aucu---aag -auaua-caa guauaUAAAG AGACUAUUA- ----UGGAAA 301 |UAC-guGC| UAU-GUAU-U A|aagaga-- ---------g aaauuuaac| -uuau(guac 361 auga-----) a|uaaaaca- u---aug--- ---------- ---------- ---------- 421 ---------- ---------- ---------- -----aa-cu c--------- -----(-uua 481 )gag|----- ---------- ---------- --aaa----- ---------- -(--uu-a)- 541 ---------- -----uuuaa u--<------ ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- ---------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 ---------- ---------- ---------- ---------- ---------- ---------- 781 ---------- ---------- ---------- -------->- ------AAAC |GAAGUGAAU 841 UGA(AAUA)U CUUAUUA--- -ACUUC---- ---------- ---------- ---AGGAAAA 901 AAAAUC(-AA AC)GA-G-AU |UCU-AUGA- -UUAG-U(-G -UGA)ACUAA -AAUAGAGU- 961 -AGCCUA------ 1201 ---------- ---------- ---------- ---------< ---------- ---------- 1261 ---------- ---------- ---------> ---------- ---------- ---|-(---) 1321 ---------- ---------- ---------- ---------- ---------- --<-ua---- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- >---AGUAAA AUGGCC(--- ---------- 1561 ---uaaa)AG CUGUUUGAAU ---uuaUGGG G(AACCU-U) -CCUCAA--A GCCUA-AAUA 1621 ---UA-AUAC A-UGAGCGAC AGUG-AA--- --AAGUACC( -GUGA-)GGG ---AAAauu- 1681 uu-------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- -(-------) ---------- ---------- ---------- ---------- 1801 -uUUG-AAAU AGUA-GUU-U U-<------- ---------- ---------- ---------- 1861 ----->AUAA GCAGCUCAAG Cugau---<- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------> (-----aaua 2041 --)---aaaa GCAAGAGC-G UACCUU(UU- GCAUA)AUGG |GUC-ACCAA GU-----UA- 2101 ACAUUAGAUG CGA--gcuaa u-uaucu(-- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- --ugauuuga u)--agauga --caug-cau 2521 agu-(-uaaa )--ccgucau ua(-aaa--) ua-auga--- ------auaG UGUCU-AAAG 2701 UUA-GACCCG AA-GCCUA-G UG-AUCUUAC UAU-AGU-CA GGGC------ u--------- 2761 -(-------- ---------- ---------- ---------- ----auaaa) ------g--- 2821 -GUCCGAA-C GG-GUUAUC( GUUGCAA-A) GAUA-UCCGA --AGAACUA- UGGUAAGCGA 2881 GU(G-AAAG) ACA-ACAC-U G-ACUAGG-- AUAGCU-GGU UUUCU--GCG AA-ACC-UAU 2941 (-AAAA)GUA GG-CA-GUUU AAGU<----- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ------->aa CAU|-CUUAG 3061 C|AGGUAC|A GAACUuu-AU CU-ca----- ---------- ---------< gacaa-gaug 3121 uaua-----u ucucauaugg auaagua--- ---------- ---------- ---------- 3181 ----aggcgc ggcgcggc(g aaa)gcucuu ccucgcuauu uaucuauuua uaugaaauac 3241 auu-uuauuu guauacaucg ggggaucg-u gaagauuuua ucgg>----- ---------u 3301 gAG-uAu-gu AGACUCGG-- AAUG|-ACAA -A-G---AUG ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- -guu--CU-U -GAAU-UAUC GGACA--UA- GA-AU(-GCU 3481 AAG)GUUGUA UG-UC----A AAAGGG(AAA -CAG)CCC-A GAACA-A--A -GAaauaguu 3541 aaGGU-UCCA -AAAUUA-U- UAUUAAGUG- --------AA AUUAAGAGG- GUUUUUAUAU 3601 A--------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- AGUCG-ACAA G<-------- ---------- ---------- 3721 ---------- ---------- ---------- ---------- -->AAGAU-A GGC(CUGGAA 3781 GC-A)-GCCA -UAUU|U(U- AA)A|GACCU C(--GUAACA )GA|-GCAC- UUGUUAAUC-UU-A -AA-AGC|-A UCGAAAAU-- ---------- ---------- ----UUAUCG 3961 GAUCU----- ---------- ---------- ---------- ---------- ---------- 4021 ---------- ----AAAUAA UAU------- ---------- ---------- ---------- 4081 -------|AC CGAA--ACU| U--U-GU|CC Acaa------ ---augacca uaau(aaauu 4141 a--a)guuau ggucauuu-- ---------- ---------- ---------- ---------- 4201 ---------- ---------- ---------- ---------- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- --------(- 4441 ------)--- ----uug-UG -G-----GGU AGCAG-AA|- CG-UUGAGUU A---AUAuuu 4501 g--------A CUUUU-CUUU (uuu----)< ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ------->AA AGA--AAA-A U|AUAGGAC| AACUCAAGUG AUAAUGG-UG 4681 AC|AUGAGUA -ACAA-AAA- AGAAGG-GC- (uauguaaau uauaauauaa ua(uaa)uau 4741 uauauuauau guuaa)-G-C UCUCU-|CGC C-UAAA-GCU UAU--GGAA- -|----ag-- 4801 ---------- ---------- ----(--agu u-)---|--- ---uua---- ---------- 4861 -aaaaaguaa -CGGCCUCUA A-GUU-G--- AUAAUA-(cu ua-------- ------)<-- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 >-UAUU---A U----U-GCG AU-GAGAAa- aucu(aauua cuuu------ ---------- 5041 ---------- ---------- ----)agaca |---ac|auu uaaccuu--- |--<------ 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ---------- ---------- 5221 ---------- ---------- ---------- ---------- ---------- ---------- 5281 ---------- ---------- ---------- ---------- ---------- ---------- 5341 ---------- ---------- ---------- ---------- ---------- ---------- 5401 ---------- ---------- ------->-- ---------- ---------- ---------- 5461 -----(---- ------)--- ---|------ --------|- ---------- -(-----)-- 5521 |--------- ---------- ---------- -----(---- )--------- ---------- 5581 --<------- ---------- ---------- ---------- ---------- ---------- 5641 ---------- ---------- ------->-- ---------- ---------- ------ --------aa ggaagu---- -ACCGUA|CC 6481 UA-GAAACU- -(GAAACA)A G|UAAGC-UA GUA-(GAG-A A-----)-UA CGAAGGCGU| 6541 |-aAUGAG-G U--AACAAUC -AUAA-AGGA ACUCGGCAAA CUUACUACCG UAAC(UUAG- 6601 )GGAUAA-GG AGG|gcucau uagucucg-- -----(auua aua)<----- ---------- 6661 ---------- ---------- ---------- ---------- ---------- ---------- 6721 ---------- ---------- ---------- ---------- --->----cg aguaaaaagg 6781 aaga|A(GCA )U--GAAAUA UUGUUGUA|C GA---CUG-U UU(AAUUA)A AA-CAAA-GC 6841 ACUUUG|CAu aAAGAU---- ---------- (--GAAA--- ------)--- ---------- 6901 AUCUAGGUA- UUG-AGUGUG AUCUCU<--- ---------- ---------- ---------- 6961 ---------- ---------- -------->G CC-CG-AU|G CCGGCU-GGU UAACGA-Auu 7021 a-acuaua-u u-(------- ---------- ---------- ---------- ---------- 7081 ---------- ---------- -------gau aaa)ag--ua uggucuuaGA G-GAACCC-| 7141 CC-GGUU-AA U-|GG-C|-G -GCCUU-(AG C-GUG)AGGG UC|C(UAA)- GG-UAGCGAA 7201 ACG-CC-U-U |GGCCGU(-U AAAU-)GCGG UC|UU-GCAU GAAUGAUGUA A-CGAUACAA 7261 CA-------- ---------- -------GCU GUCUCUAUGA UUGA-CU-CA ----GUGAAA 7321 UU|G|GAAUA GC-AG(U-GC AGAUA)CUGC UUA----CCU CUAGUUAGAC GAGAAG-ACC 7381 CUAUGC-|-A GCUUU--ACU GU|--U-ACU AAU--UAUU| aauau- ga-----ucc -cggcuauu- cug---AGUG 7501 UAUAAGGUA- -AUU------ ---------- --<------- ---------- ---------- 7561 ---------- ---------- ---------- ---------- ---------- ---------- 7621 ---------- ---------- ---------> --(---gaua a)-------- -------AAU 7681 AUAAUUGAAA CACCUUu|a- ----uuauu- c-c----auc auau-uauaa u--------- 7741 -----(---- ----)----- ---------- ---------- ---------- --------GAAC AAUUG-U-UA -GGA-GA-CA GUUUAUGCG( 8161 GGG)CA-CA- G|ACCCCA(- --------UA AAGAGUAAA- )UGGGUGU|G |U|CUAA-|< 8221 -uaauaaaaa aauuuauguu ugcaauuuuu uauaguaauc cuauauuuaa ucauguaugu 8281 ucuauucaua gaauauaaua ugaaugaauu cgauucauuu auaauauagu ccuuggguac 8341 aguauaaaaa uuauauaugu auuuuugcaa uauaauuucc augaaauuag g>A-GG-UAA 8401 -GA|--UU-- uu---- (--------- )--------- ---------- ---------- 8701 ---------- ---------- ---------- ----aAA|GC (U|UAAUG)G CUU-AAU-CU 8761 U-GC-CUUAC UGUUU-GAU( -uaacaacaa )AUCUU-ACA G--------- ---------- 8821 ---------- --------UC GC-------- ---(GUAA-- -)-------- ----GCG-GG 8881 G|---CAU-A GGAUC-ACAA GA-U------ ---------- ACA(------ ---------- 8941 ---------- ---------- ---------- ---------- ----AAAAGG AG)AG|AUCU 9001 UGGauuauu- |gg--aAAAG CUACGC|UAG G|GAUAACAG |G-CUA-AuU UGCGCAAGAG 9061 UG(U--ACAU )AAUGAGUGC --GCGGUUUG GC-ACCUCGA UGUC|GG--C U|U|AACUU| 9121 AU-CC-UCAC GGAUG(--CA -GA)AACUAU GUAG-GGU|A CGAC(UGUUC )GUCGA-UUA 9181 A--AAAGUU- --ACAUGAGC UGGGUUAAAU AC|GU-C(GU GA)GACAGUA UGGUUUCUAU 9241 CU|UCUAG-A GG|G|<---- ---------- ---------- ---------- ---------- 9301 >AAUUA-GAA UA-UAA-CAA GGA-uua-au cu--(-UGU- AC(-GAAA)G GAACa)uggg 9361 g--ua-A UUAACCU-CU GGUUUACCUG 9421 U|-UGU-UUA ------- 9541 UAA-GCAUGG CAGG--AAAG CUAA-GUUAG UCA------- ---------- -------AAG 9601 ---------- -AUAAGUGCU (GAAAGC--A U-AUA)G-GC -AC-GAAGCU UGUCUUG--- 9661 -GGAU--A-- UUUCUU-<-- ---------- ---------- ---------- ---------- 9721 ---------- ---------- ---------- ---------- ---------- ---------- 9781 ---------- ---------- ---------- ---------- ---------- ---------- 9841 ---------- ---------- ---------- ---------- ---------- ---------- 9901 ---------- ---------- ------>--| ---------- ---------- aaauaua|CG 9961 UAA(UAUAAU A--)UUACGU C--------- ---------- ---------- ------auUA 10021 G|GCuuaauu ---------- ---------- ---------- ---------- ---------- 10081 ---------- ---ugcaaga auc------- ---------- --------(- ---------- 10141 ---------- -------uag a)gauuu--- ---------- ---------- ---------- 10201 ----uaaggu a|u|uaaGUA CUAau-u--- ---------- ---------- ----u-uaua 10261 gu-------- ---------- ---------- ---------- ---aaa---- ---cuauaua 10321 auug----|- -------aua uauuuuauuu aaagccgagu uagcauaaaa ggaaugcaau 10381 uguuuuguaa ucaauagaag uaagugcgau acuugcaccc ggcuaggagu uauaaggauu 10441 aguagucaag ugguacgaca uagcucuuuc aaugcuacca ucgcagguuc gauuccugcc 10501 uagucuauua gguaggcgca agccacauac auaauggcga aguauaucga ggagcuugcg 10561 cuauauauac agcagacgaa uuauaaauau cccuacguca ggcgcagagg uuuacauacg 10621 acgaguuaua uauauaaccc uacguaugua ugcccagcac cgucauucuu uuuauugagg 10681 cuauagcuca auugguagag cguacugcuc auaacaguaa uuauaagugu ucaagucacu 10741 uuagccuuau ggcuguauau ucugcugcag ||||| // LOCUS mt.P.canad 10775 bp RNA RNA 09-JAN-1995 DEFINITION Mitochondria Pichia canadensis. str. was Hansenula wingei. ACCESSION No information KEYWORDS No information. SOURCE Mitochondria Pichia canadensis. str. was Hansenula wingei. ORGANISM Mitochondria Pichia canadensis. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 10775) Corresponding GenBank entry: D31785 BASE COUNT 1383 a 246 c 374 g 1082 t 7690 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~auaaa aaauauaaga 181 auauaaauau aaaaauaa-a auguauagau u--------- ---------- ---ugaaaag 241 uguuauacgg cau------- ---------- -----UAAAG GGUUAUUCA- ----AGGAAU 301 |AUA-uuAC| UAU-UAAU-A A|ggaa---- ---------- -----aggu| ---------- 361 ---------- -|-------- ---------- ----uacuaa uaauuaaaua auauuuaauu 421 uaaa------ ---------- ---------- accuaa---g g--------- -----(uaaa 481 )cc-|----- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---<------ ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- ---------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 ---------- ---------- ---------- ---------- ---------- ---------- 781 ---------- ---------- ---------- --auag-->- --aaaaAAAC |GUGAAGAAC 841 UGA(AUCA)U CUAAGUA--- -UUCAU---- ---------- ---------- ---AGGAAAA 901 GAAAUC(-AA AA)GA-G-AU |AUU-AUGA- -GUAA-U(uG GCGA)AUGAA -AAUAAUAA- 961 -AGUUAA------ 1201 ---------- ---------- ---------- ---------< ---------- ---------- 1261 ---------- ---------- ---------> ---------- ---------- ---|-(---) 1321 ---------- ---------- ---------- ---------- ---------- ---------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- ---AAGUAAU CCCU--(--- ---------- 1561 ---uuag)-- GGGGAUGAAU ----aaAGAU U(AAACU-A) -AAUCUA--A AACUA-AAUA 1621 ---UU-AUUA A-UAAGUAUA aa-------- --AAGUACC( -GAAA-)GGG ---AAA-AU- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- -(-------) ---------- ---------- ---------- ---------- 1801 --AUAGAAAU GGAU-AAU-U U-<------- ---------- ---------- ---------- 1861 ----->AUAA GCAGUAUgag acuuu---<- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------> (------aaa 2041 --)---aaag uuuaAUAC-G UACCUU(UU- GUAUA)AUGG |GCC-AGCAA GU-----AA- 2101 UAAUAAUUAG CAA--aauau u------(-- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- --------aa a)-------- a-auau-uaa 2521 aua-(-uaaa )--uagaa gau|uauuau 3061 a|UGGUAU|A GCAAuua-au au-uu----- ---------- ------aa-< auuua-uuau 3121 uauu-----u au-------- ---------- ---------- ---------- ---------- 3181 ---------- ---------- ---------- ---------- ------aaua auaaau---- 3241 ---------- -------aug gggguc-aau uauagacuua ucau>----- ---------g 3301 uau--au-uu aauCUCAU-- AAUA|auaua -a-u---auc auuauuaauu aauaaaauaa 3361 uuaaua---- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- -aaaaaAU-U -AACU-AAUC AGACU--GU- AU-GC(-GAU 3481 AAG)GUAUAU AG-UC----G AGAGGG(AAA -CAG)CCC-U AAAUA-a-AA -UA-UAA--- 3541 --GGU-UCUA -AAAUAU-A- AAUUAAGUG- --------aa uaaaaugua- uaauaaauuc 3601 -au------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- AAUCA-AUUA G<-------- ---------- ---------- 3721 ---------- ---------- ---------- ---------- -->uuGGU-G GGU(UUGACA 3781 AU-A)-ACUA -UCCU|A(U- AA)U|GAACA U(--GUAACA )AU|-GCAC- UAAUaaaga-aa-u -uu-uau|-a cagauaa--- ---------- ---------- ----UACACG 3961 GAUCU----- ---------- ---------- ---------- uaaaaauaua uuuuuuuaau 4021 uaaagauaua uuauaAAUUU AUU------- ---------- ---------- ---------- 4081 -------|AC CGAA--GAU| U--U-AU|AU Auuuauauau ---------- ----a-uaaa 4141 aaca-a---- ---------- ---------- ---------- ---------- ---------- 4201 ---------- ---------- ---------- ---------- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 --------au auauaaa-UA -U-----AGU AACAG-AG|- CA-UAUAAUA A---auaaaa 4501 uauaaua--- -guua-gaua (-------)< aauuauuaua aaaauuaaau aaaaauaa-- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ------->ua uuu--aau-a a|auau--u| aAUUAUAUUG AGAAUGC-UG 4681 GC|AUGAGUA -GCGA-AAA- AUA-AG-Ua- (auaaaaauu auaa------ ---------- 4741 ---------- -----)---A CUUAUu|CAC A-uaau-ACA UAA--gguu- -|----uua- 4801 ---------- ---------- ----(---cu a-)---|--- --uaaa---- ---------- 4861 ---uu----- -CGGUCCUUA A-AUU-A--- guauau-(aa auaua----- ------)<-- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 >auaua---- -----u-auG AU-AGGuu-- ----(----- ---------- ---------- 5041 ---------- ---------- ----)----- |-----|--- ---------- |--<------ 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ---------- ---------- 5221 ---------- ---------- ---------- ---------- ---------- ---------- 5281 ---------- ---------- ---------- ---------- ---------- ---------- 5341 ---------- ---------- ---------- ---------- ---------- ---------- 5401 ---------- ---------- ------->-- ---------- ---------- ---------- 5461 -----(---- ------)--- ---|------ --------|- ---------- -(-----)-- 5521 |--------- ---------- ---------- -----(---- )--------- ---------- 5581 --<------- ---------- ---------- ---------- ---------- ---------- 5641 ---------- ---------- ------->-- ---------- ---------- ------ ---------- ---------- -ACCGUA|AU 6481 U--AAUACC- -(GACCCA)G G|UGUGUAUA GUA-(GAG-A A-----)-UA UGAAaGUGA| 6541 |--AUGGA-A A--AAAUAUG -GUUA-AGGA ACUCGGCAAA AACAAC-CCC CACG(UUAGU 6601 )CAAAAAAGG GUA|------ ---------- -----(---- ---)------ ---------- 6781 ----|-(--- )---agaaUA AGAUUAUA|C AA---CUG-U UU(ACUAA)A AA-CACA-GC 6841 ACUUUG|CA- -GAUAU---- ---------- (--aaaa--- ------)--- ---------- 6901 AUAUUAGUA- UAA-GGUGUG AAUCCU<--- ---------- ---------- ---------- 6961 ---------- ---------- -------->G CU-CA-AU|G AUUUA--aua acuaaa-aa- 7021 --uuauuu-u u-(------- ---------- ---------- ---------- ---------- 7081 ---------- ---------- -------aua aaa)gg--aa auaa--uu-c u-aaagau-| 7141 UA-GUCA-AA U-|AG-C|-A -GCCUU-(AU -UUUG)AGGG UU|A(UAA)- UG-UAGCGAA 7201 AUU-CA-U-U |GGCUAC(-U AAUU-)AUAG UC|CU-GCAU GAAUGGAGUA A-UGAUAUAA 7261 UA-------- ---------- -------ACU GUCUCAACCA UAUA-UC-CA ----GCGAAA 7321 UU|G|GAUUA GC-AG(U-GA AGAUA)CUGC UAA----ACU UCAGUAAGAC GGAAAG-ACC 7381 CUAUGC-|-A GCUUU--ACU AU|--u-aau aaacaaacu| <--------- ---------- 7441 ---------- ---------- --->guuuu- au-----auu -uauauuua- uuc---AGCU 7501 UAUAAAGUA- -AUA------ ---------- --<------- ---------- ---------- 7561 ---------- ---------- ---------- ---------- ---------- ---------- 7621 ---------- ---------- ---------> --(--aauag u)-------- -------UAU 7681 AAAAUUGAGA AACUUUu|u- ----aaaua- u-a-a-auau aaaa-cuua- -ucuua---- 7741 -----(---- ----)----- ---------- ---------- ---------- ---------gaa aguuu-u-ua -uua-GA-UA GUUUUGAUG( 8161 GGG)CG-UC- A|UUCUCA(- --------UA UAAAUAAAC- )UGAGUAA|G |U|CCUU-|< 8221 uauaugauua auaaauaauu aaaaaaaaau auaaaauaua uauuaaauau auuaauuaua 8281 uauauacaau uuaaauuauu uauauuauuu uauauaaaua aucuaaaauu gaauaaauaa 8341 uagaaaagag a--------- ---------- ---------- ---------- ->a-gg-uau 8401 -ag|--uaa- ------ (--------- )--------- ---------- ---------- 8701 ---------- ---------- ---------- ----aaa|AU (A|UAAUA)G UAU-AAc-ua 8761 u-gcauaAAU UACgauCAU( -aaacaa--- )AUGAA-GUA A--------- ---------- 8821 ---------- --------AU AC-------- ---(GUAA-- -)-------- ----GUA-UG 8881 G|---UAUAA UGAAC-AUUU AC-U------ ---------- AUA(------ ---------- 8941 ---------- ---------- ---------- ---------- ----AAUAGU AU)ua|GGUA 9001 AAG-AUAAC- |GGAUAAAAG UUACGC|UAG G|GAUAACAG |G-GUA-A-U AUAACGAAAU 9061 AG(U--ACAU )AUAGUAAGU --UAUGUUUG CC-ACCUCGA UGUC|GA--C U|C|GCCUU| 9121 AU-CC-UAUU GG-UU(--GU AGC)AGCUAA UAAG-GGU|U UGAC(UGUUC )GUCAA-UUA 9181 A--AAAGGC- --ACGUGAGU UGGGUUAAAU AC|UU-C(GU GA)G-CAGUA UGGUUCCUAU 9241 CU|UCUGA-A GU|A|<---- ---------- ---------- ---------- ---------- 9301 >AAUAU-UAU AA-AUA-UAA GUC-UAU-AA AU--(UAGU- AC(-GCAA)G GAUC-)AUUU 9361 A--UA-<--- ---------- ---------- -------->A UUAAUCA-AU GGUGAACUAU 9421 U|aaau-aau ------- 9541 auu-auuUAC GUAG-uauAG CUAA-AUUAA UAAA------ ---------- -------UAA 9601 ---------- --UAAGUAUU (GAAAGC--A UAUGA)A-AU -AC-GAAUUU GU-CUUA--- 9661 -UGGA--U-- -AUAAU-<-- ---------- ---------- ---------- ---------- 9721 ---------- ---------- ---------- ---------- ---------- ---------- 9781 ---------- ---------- ---------- ---------- ---------- ---------- 9841 ---------- ---------- ---------- ---------- ---------- ---------- 9901 ---------- ---------- ------>--| ---------- ---------u auauagu|GA 9961 UUG(UAUACU A--)UAAUCa uua------- ---------- ---------- ------aaua 10021 g|uuauu-ug --c------- ---------- ---------- ---------- ---------- 10081 ---------- --aaauaauu ucu------- ---------- --------(- ---------- 10141 ---------- -------uuu u)agaaa--- ---------- ---------- ---------- 10201 ----ug--ua u|a|aauaa- CUAau-u--- ---------- ---------- ----a-acua 10261 uauu------ ---------- ---------- --gcaauaua acuucuaauc uauauauuuu 10321 auuuuu--|- ---------- ---------- ---auauaua uuauauauau uaaaca~~~~ 10381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ||||| // LOCUS mt.S.cerev 10775 bp RNA RNA 21-JAN-1983 DEFINITION Mitochondria Saccharomyces cerevisiae. ACCESSION No information KEYWORDS No information. SOURCE Mitochondria Saccharomyces cerevisiae. ORGANISM Mitochondria Saccharomyces cerevisiae. REFERENCE 1 (bases 1 to 6463) AUTHORS No information JOURNAL Feb. 21 1983 STANDARD No information COMMENTS Organism information Culture collection: ? Sequence information (bases 1 to 10775) Corresponding GenBank entry: J01527 Phylo:Mitochondria,Fungi,Saccharomyces BASE COUNT 1403 a 280 c 419 g 1171 t 7502 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~agu aaaaagua-g aauaauagau u-ugaaauau --uuau---- ---------- 241 -----uau-- ---------- ------auag --auuUAAAG AGAUAAUCA- ----UGGAGU 301 |AUA--aua| auu-aaau-u u|aauaaauu uaauauaacu auuaauaga| -auua(-ggu 361 uac------) u|aauaaau- uaauaac|aa u-uaau-(-u uuaaaaccua aggg(uaaa) 421 ccuuuau)-a uuaauaa--u guuauuu--- uuua------ ------uuau auuu------ 481 ---------- ---------- ---------- auaauaag-- ---------- -(-aau-a)- 541 ---------- --auuauuaa uaa<------ ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- ---------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 ---------- ---------- ---------- ---------- ---------- ---------- 781 ---------- ---------- ---------- -------->- --uaauAAAC |UAAGUGAAC 841 UGA(AACA)U CUAAGUA--- -ACUUA---- ---------- ---------- ---AGGAUAA 901 GAAAUC(-AA CA)GA-G-AU |AUU-AUGA- -GUAU-U(-G GUGA)GAGAA -AAUAAUAA- 961 -AGGUCU------ 1201 ---------- ---------- ---------- ---------< ---------- ---------- 1261 ---------- ---------- ---------> ---------- ---------- ---|-(---) 1321 ---------- ---------- ---------- ---------- ---------- ---------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- ---AAGUAUU AUGUGA(--- ---------- 1561 ----aaa)AA AUGUAAGAAA ----auAGGA U(AACAA-A) --UUCUA--A GACUA-AAUA 1621 ---cu-a-uu a-auaagUAU AGU------- --AAGUACC( -GUAA-)GGG ---AAA-GU- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- -(-------) ---------- ---------- ---------- ---------- 1801 --AUGAAAAU GAUU-AUU-U U-<------- ---------- ---------- ---------- 1861 ----->AUAA GCAAUCAUGA Auaua---<- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------> (---uuauau 2041 --)---uaua UUAAUGAU-G UACCUU(UU- GUAUA)AUGG |GUC-AGCAA GU-----AA- 2101 UUAAUAUUAG UAA--aac-- -------(-- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ------aaua a)-------- ----gu-uau 2521 aaa-(-uaaa )--uag---- ---------- ---------- ------uuaA UUAAU-AUUA 2701 AUU-GACCCG AA-AGCAA-A CG-AUCUAAC UAU-GAU-AA GAUG------ g--------- 2761 -(-------- ---------- ---------- ---------- ----auaaa) ------c--- 2821 -GAUCGAA-C AG-GUUGAU( GUUGCAA-U) AUCA-UCUGA --UUAAUUG- UGGUUAG-UA 2881 GU(G-AAAG) ACA-AAUC-U G-GUUUGCAG AUAGCU-GGU UUUCU--AUG AA-AUA-UAU 2941 (-GUAA)GUA UA-GC-CUUU AUaa<----- ---------- ---------- ---------- 3001 ---------- -----auaau aauuauuaua uaauauuaua uuaauau>ua uau|-AAAGA 3061 A|UGGUAC|A GCAAUUA-AU AUauau--ua gggaacu-(a uuaa----)< ---------- 3121 ---------- ---------- ---------- ---------- ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---->-aguu uua-uu-aau 3301 aAU--Au-UA AAUCUCGA-- AAUA|-UUUa -a-uu--aua ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- -uau--AA-U -AAAG-AGUC AGAUU--AU- GU-GC(-GAU 3481 AAG)GUAAAU AA-UC----U AAAGGG(AAA -CAG)CCC-A GAUUAAG--A -UA-UAA--- 3541 --AGU-UCCU -AAU-AA-A- UAAUAAGUG- --------AA AUAA--AUA- UUAAAAUAUU 3601 AuA------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- AUAUA-AUCA G<-------- ---------- ---------- 3721 ---------- ---------- ---------- ---------- -->UUAAU-G GGU(UUGACA 3781 AU-A)-ACCA -UUUU|U(U- AA)U|GAACA U(--GUAACA )AU|-GCAC- UGAUUUUAA-UA-U -UU-AAA|-A UCAAAUAUau auauauauau uuguuaauag auaaUAUACG 3961 GAUCU----- ---------- ---------- ---------- uaauaauaa- ---------- 4021 ---------- ---GAAUUAU UUAauuccua auauggaaua uuauauuuuu auaauaaaaa 4081 uauaaau|AC UGAA--UAU| C--U-AA|AU Auuauuauua c--------- --uu(uuuuu 4141 u-uu)aa--- ---------- ---------- ---------- ---------- ---------- 4201 ---------- ---------- ---------- ---------- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- --------(- 4441 ------)-ua auaauaa-UA -U-----GGU AAUAG-AA|- CA-UUUAAUG A---UAAuau 4501 ---------A UAUUA-GUUA (uuaau--)< ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ------->UA AUA--UAU-G U|AUUA---| -AUUAAAUAG AGAAUGC-UG 4681 AC|AUGAGUA -ACGA-AAA- AAA-GG-U-- (auaa----- ---------- ---------- 4741 ---------- -----)---A CCUUUu|CAC C-UAAA-ACA UAA--GGUU- -|----ua-- 4801 ---------- ---------- ----(--acu a-)---|--- ---uaa---- ---------- 4861 ---aagua-- -CGGCCCCUA A-U-U-A--- ---aau-(ua auaagaauau aaauau)<-- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 >--auu---- -----U-AAG AU-GGGAu-- ----(aaucu auauuaauaa a--------- 5041 ---------- ---------- ----)----- |-----|--- ---------- |--<------ 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ---------- ---------- 5221 ---------- ---------- ---------- ---------- ---------- ---------- 5281 ---------- ---------- ---------- ---------- ---------- ---------- 5341 ---------- ---------- ---------- ---------- ---------- ---------- 5401 ---------- ---------- ------->-- --aauu--u- -aucu----- ---------- 5461 -----(---- ------)--- ---|------ --------|- ---------- -(-----)-- 5521 |--------- ---------- ---------- -----(---- )--------- ---------- 5581 ---- agauCAGGA- ----AA-Uaa uu---- ---------- ---------- -ACCGUA|AU 6481 G--UAGACC- -(GACUCA)G G|UAUGU-AA GUA-(GAG-A A-----)-UA UGAAGGUGA| 6541 |--AUUAG-A U--AAUUAAA -GGGA-AGGA ACUCGGCAAA GAUAGC-UCA UAAG(UUAGU 6601 )CAAUAAAGA GUA|------ ---------- -----(---- ---)<----- ---------- 6661 ---------- ---------- ---------- ---------- ---------- ---------- 6721 ---------- ---------- ---------- ---------- --->------ ---------- 6781 ----|-(-au )a--agaaCA AAGUUGUA|C AA---CUG-U UU(ACUAA)A AA-CACC-GC 6841 ACUUUG|CA- -GAAAC---- ---------- (--gauaa-- ------)--- ---------- 6901 GUUUAAGUA- UAA-GGUGUG AACUCU<--- ---------- ---------- ---------- 6961 ---------- ---------- -------->G CU-CC-AU|G CUUAAU-AUa UAAAUA-AA- 7021 --AUUAUu-- --(------- ---------- ---------- ---------- ---------- 7081 ---------- ---------- ---------u aac)----gA UAAU--uuAA U-UAAAuu-| 7141 UA-GGUA-AA U-|AG-C|-A -GCCUU-(AU -UAUG)AGGG UU|A(UAA)- UG-UAGCGAA 7201 AUU-CC-U-U |GGCCUA(-U AAUU-)GAGG UC|CC-GCAU GAAUGACGUA A-UGAUACAA 7261 CA-------- ---------- -------ACU GUCUCCCCUU UAAG-CU-AA ----GUGAAA 7321 UU|G|AAAUC GU-AG(U-GA AGAUG)CUAU GUA----CCU UCAGCAAGAC GGGAAG-ACC 7381 CUAUGC-|-A GCUUU--ACU GU|--A-AUU AGA--uaga| gaauu- au-----ugu -uuauuaua- uuc---AGCA 7501 UAUUAAGUA- -AUC------ ---------- -- --(------- -)-------- -------GAU 7681 AUUAAUGAGA UACUUAu|u- ----auaau- aua-a-ugau aauu-cuaau ---------- 7741 -----(---- ----)----- ---------- ---------- ---------- --------AGAC AAUCU-C--A -AUU-GG-UA GUUUUGAUG( 8161 GGG)CG-UC- A|UUAUCA(- --------GC AAAAGUAUC- )UGAAUAA|G |U|CCau-|< 8221 aaauaaauau auaaaauuau ugaauaaaaa aauaauauau auuauauaua uuaauuauaa 8281 auugaaauau guuuauauaa auuuauauuu auugaauaua uuuuaguaau agauaaaaau 8341 ---------- ---------- ---------- ---------- ---------- ->A-UG-UAC 8401 -AG|--UAa- ------ (--------- )--------- ---------- ---------- 8701 ---------- ---------- ---------- ----uUA|AU (A|UAAUG)G UAU-AAC-UG 8761 U-GCgAUAAU UGUAA-CAC( -aaacga--- )GUGAA-ACA A--------- ---------- 8821 ---------- --------GU AC-------- ---(GUAA-- -)-------- ----GUA-UG 8881 G|---CAUAA UGAAC-AAAU AA-C------ ---------- ACU(------ ---------- 8941 ---------- ---------- ---------- ---------- ----GAUUGU AA)AG|GUUA 9001 UUG-AUAAC- |GAAUAAAAG UUACGC|UAG G|GAUAACAG |G-GUA-A-U AUAGCGAAAG 9061 AG(U--AGAU )AUUGUAAGC --UAUGUUUG CC-ACCUCGA UGUC|GA--C U|C|AUCAU| 9121 UU-CC-UCUU GG-UU(--GU AAA)AGCUAA GAAG-GGU|U UGAC(UGUUC )GUCAA-UUA 9181 A--AAUGUU- --ACGUGAGU UGGGUUAAAU AC|GA-U(GU GA)AUCAGUA UGGUUCCUAU 9241 CU|GCUGA-A GG|A|<---- ---------- ---------- ---------- ---------- 9301 >AAUAU-UAU CA-AAU-UAA AUC-UCA-UU AU--(UAGU- AC(-GCAA)G GACC-)AUAA 9361 U--GA-<--- ---------- ---------- -------->A UCAACCC-AU GGUGUAUCUA 9421 U|-UGA-UAA ------- 9541 UUA-UCAUAG UAGA--UAAG CUAA-GUUGA UAA------- ---------- -------UAA 9601 ---------- -AUAAAUAUU (GAAUAC--A UAUUA)A-AU -AU-GAAGUU GU-UUUA--- 9661 -AUAA--G-- -AUAAU-<-- ---------- ---------- ---------- ---------- 9721 ---------- ---------- ---------- ---------- ---------- ---------- 9781 ---------- ---------- ---------- ---------- ---------- ---------- 9841 ---------- ---------- ---------- ---------- ---------- ---------- 9901 ---------- ---------- ------>--| ---------- --------ua aucugau|AA 9961 UUU(UAUACU A--)AAAUUA Auaau----- ---------- ---------- ------uaUA 10021 G|GUuuuaua uau------- ---------- ---------- ---------- ---------- 10081 ---------- --uauuuaua aauaaauaua uuauaauaau aauaauua(u uauuauuaau 10141 aaaaaauauu aauuauaaua u)-------- ---------- ---------- ---------- 10201 --------ua a|u|aaaAUA CUAau-u--- ---------- ---------- ----u-auca 10261 guuaucuaua uaaua----- ---------- --------uc uaaucuaauc uauuauucua 10321 uauacu--|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ||||| // LOCUS mt.W.satur 10775 bp RNA RNA 11-JAN-191 DEFINITION Mitochondria Williopsis saturnus var. mrakii.. ACCESSION No information KEYWORDS No information. SOURCE Mitochondria Williopsis saturnus var. mrakii. ORGANISM Mitochondria Williopsis saturnus var. mrakii. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 10775) Corresponding GenBank entry: X71392 ID MIWMTRNAV standard; DNA; ORG; 3709 BP. XX AC X71392; XX DT 16-APR-1993 (Rel. 35, Created) DT 16-APR-1993 (Rel. 35, Last updated, Version 2) XX DE W.mrakii mitochondrial DNA for tRNA-Val, 15S rRNA and 21S rRNA DE (partial) XX KW 15S ribosomal RNA; 21S ribosomal RNA; ribosomal RNA; KW small subunit ribosomal RNA; transfer RNA; transfer RNA-Val. XX OS Williopsis mrakii OC Eukaryota; Plantae; Thallobionta; Eumycota; Hemiascomycetes; OC Endomycetales; Saccharomycetaceae. XX OG Mitochondrion XX RN [1] RP 1-3709 RA Drissi R.; RT ; RL Submitted (07-APR-1993) on tape to the EMBL Data Library by: RL R. Drissi, Institut Curie Biologie, Bat 110 Centre Universitaire, RL 91405 Orsay Cedex 13, FRANCE XX RN [2] RP 1-3709 RA Drissi R., Sor F., Fukuhara H.; RT "DNA sequences coding for the ribosomal small subunit RNA and Vayl RT tRNA from the lineard mitochondrial genome of Williopsis mrakii"; RL Unpublished. XX FH Key Location/Qualifiers FH FT source 1..3709 FT /organism="Williopsis mrakii" FT /mitochondrion FT /strain="CBS 1707" FT promoter 42..50 FT /note="15S rRNA promoter" FT rRNA 50..1666 FT /product="15S ribosomal RNA" FT tRNA 1822..1895 FT /product="tRNA-Val" FT promoter 1955..1963 FT /note="21S rRNA promoter" FT rRNA 1963..>3709 FT /product="21S ribosomal RNA" XX SQ Sequence 3709 BP; 1530 A; 324 C; 497 G; 1358 T; 0 other; BASE COUNT 741 a 153 c 246 g 607 t 9028 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 |~~~~~~~~| ~~~~~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~~(~~~~ 361 ~~~~~~~~~) ~|~~~aaau- uaauaa---- ---------- --aaaa--u- -----uga-- 421 -----au-a- ------a--u guuaugaug- --uac----- ag-------- -------auu 481 -uga-aaagu gu-ugua--- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- ---------- 661 ---------- ---------- ---------- -------uga cauuaacggg uuauucaagg 721 aauauauugc uauuaauaaa uaagguuaau aauaauauaa aauauauaua uauugauaua 781 uauauauuga uauauuuaau accuaaggga aaccauaa>- --uaauAAAC |GUGAAGAAC 841 UGA(AUCA)U CUAAGUA--- -UUCAU---- ---------- ---------- ---AGGAAAA 901 GAAAUC(-AA AA)GA-G-AU |AUU-AUGA- -GUAA-U(-G GCGA)GUGAA -AGUAAUaa- 961 -agucgu<-- ---------- ---------- ---------- ---------- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- --->------ 1201 ---------- ---------- ---------- ---------< ---------- ---------- 1261 ---------- ---------- ---------> ---------- ---------- ---|-(---) 1321 ---------- ---------- ---------- ---------- ---------- --<-uaguaa 1381 aaau------ ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- ---aaguauu auuuua(--- ---------- 1561 ---ucaa)ga aaGUAAGAAA ----auAGAU -(AACUA-A) --AUCUA--A GACUA-AAUA 1621 ---UU-AUUA A-UAAGC-AU AAA------- --AAGUACC( -GAAA-)GGG ---AAA-au- 1681 a--------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- -(-------) ---------- ---------- ---------- ---------- 1801 --uga-aaug ga-u-aau-c u-<------- ---------- ---------- ---------- 1861 ----->AUAA GCaacaugag auuu----<- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------> (--auuaaaa 2041 --)---uaga uuuaaugu-G UACCUU(UU- GCAUA)AUGG |GCC-AGCAA GU-----AA- 2101 UGUAAUUUAG CAA--aau-- -------(-- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ------auau u-auau-uau 2521 aua---uaaa ---uag-aau a--------- uauaaugau- ----aa--au uaauuuauug 2581 aa-------- ---------- ---------- ---------- ---------- ---------- 2641 ------aaau guuaa----- ---------- ---------- ---u---AAG UUAAA-UUAC 2701 AUU-GGCCCG AA-AAUAA-A AG-AUCUUAU UAU-UAC-AA GAUAuau--- ---------- 2761 -(-------- ---------- -------aau uaaugaaaau uaauuuauu) ---------- 2821 -GAUCGAA-U GG-GUUAAU( GUUGCAG-U) AUUA-UCCAA --UUAGUGA- UGAUAAGUAA 2881 GU(G-AAAG) ACU-AACC-U G-UUUUAUAG AUAGCU-GGU UCUCU--GUG AA-AUA-UAU 2941 (-GUUA)GUA UA-GC-gauu uaau<----- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ------a>aa aua|-auuau 3061 a|agguau|a gcacuua-au auuuu----- ---------- ---------- ---------- 3121 ---------- ---------- ---------- ---------- ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------a 3241 auuauca-uu aauuuauuaa ugauaaaugg ggguuaauaa uuaa------ -cu-ua-uca 3301 uguauau-uu aaucucau-- aaua--uuau -a-au--uau ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- -aaa--uu-a -aauu-AGUC AGACU--AU- AU-GC(-GAU 3481 AAG)GUUUAU AG-UC----G AAAGGG(AAA -CAG)CCC-U AAAUUAC--A -UU-UAA--- 3541 --GGU-UCCA -AAAUAU-G- GAUUAAGUG- --------aa uaaaaugua- uuaauuguca 3601 u--------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- AAUCA-AUUA G<-------- ---------- ---------- 3721 ---------- ---------- ---------- ---------- -->UUGGU-G GGU(UUGACA 3781 AU-A)-ACUA -UCCU|A(U- AA)U|GAACA U(--GUAACA )AU|-GCAC- UAAUAUucg-au-a -au-uaa|ua cagauaa--- ---------- ---------- ----UAUACG 3961 GAUCU----- ---------- ---------- ---------- cgu------- ---------- 4021 ---------- ----AAAUCC AUU------- ---------- ---------- ---------- 4081 -------|AC CGAU--AAU| G--A-AU|au auuaauauau -------ucu uccgugucgg 4141 augc(cacuc )gcgucgccc ucggacuaaa uaa------- ---------- ---------- 4201 ---------- ---------- ---------- ---------- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- --------(- 4441 ------)-au auauuaa-UA -U-----GGU AACAG-AG|- CA-UAUAAUA A---ACUuua 4501 u--------a uaaua-auua (-------)< gauuaauuau uauauuauau aauuauaaua 4561 uaauuauaua cuuaauaaau auauaacuuu aauuuauuuu uaaaauaaau guauugaaua 4621 aauau----- ------->uu auu--auu-a a|UAGUU--| AAUUAUAUUG AUAAUGC-UG 4681 GC|AUGAGUA -GCGA-AAA- AUA-AGUAU- (--aau---- ---------- ---------- 4741 ---------- -----)-u-u uuuau-|aaa u-uaua-uaa acu--uauuc -|---acaua 4801 ---------- <--------- --->(--aua ca)---|--- -uaugg---- -------uuu 4861 uacuauaaau uCGGUCCUUA A-GUU-G--- guuuac-(ag auuua----- ------)<-- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 >-guaa---a -----C-ACG AU-AGGuu-- ----(uaauu uauuauuaua gauauau--- 5041 ---------- ---------- ----)----- |-----|--- ---------- |--<------ 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ---------- ---------- 5221 ---------- ---------- ---------- ---------- ---------- ---------- 5281 ---------- ---------- ---------- ---------- ---------- ---------- 5341 ---------- ---------- ---------- ---------- ---------- ---------- 5401 ---------- ---------- ------->-- --auuu-auu auaua----- ---------- 5461 -----(---- ------)--- ---|------ --------|- ---------- -(-----)-- 5521 |--------- ---------- ---------- -----(---- )--------- ---------- 5581 ---- uguacaaga- ----aa-uaa aua--- ---------- ---------- -ACCGUA|AU 6481 U--AAGACC- -(GACACA)G G|UGUGUAUA GUA-(GAG-A A-----)-UA UGAAAGUGA| 6541 |--AUGGA-U G--AAGUAUU -CGGA-AGGA ACUCGGCAAA AAAUAC-CUC CACG(UUUGU 6601 )CAAUAAAGG GAA|------ ---------- -----(---- ---)<----- ---------- 6661 ---------- ---------- ---------- ---------- ---------- ---------- 6721 ---------- ---------- ---------- ---------- --->------ ---------- 6781 ----|-(auu )a--aaaaUA AGAUUAUA|C AA---CUG-U UU(ACUAA)A AA-CACA-GC 6841 ACAUUG|CG- -GAUAU---- ---------- (--aaaa--- ------)--- ---------- 6901 AUAUUAGUA- UAA-UGUGUG Aauuc~<~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~>~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ 7021 ~~~~~~~~~~ ~~(~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~)~~~~~~ ~~~~~~~~~~ ~~~~~~~~~| 7141 ~~~~~~~~~~ ~~|~~~~|~~ ~~~~~~~(~~ ~~~~~)~~~~ ~~|~(~~~)~ ~~~~~~~~~~ 7201 ~~~~~~~~~~ |~~~~~~(~~ ~~~~~)~~~~ ~~|~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7321 ~~|~|~~~~~ ~~~~~(~~~~ ~~~~~)~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7381 ~~~~~~~|~~ ~~~~~~~~~~ ~~|~~~~~~~ ~~~~~~~~~| <~~~~~~~~~ ~~~~~~~~~~ 7441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~>~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~<~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~> ~~(~~~~~~~ ~)~~~~~~~~ ~~~~~~~~~~ 7681 ~~~~~~~~~~ ~~~~~~~|~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7741 ~~~~~(~~~~ ~~~~)~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~<~ 7801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~>~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~( 8161 ~~~)~~~~~~ ~|~~~~~~(~ ~~~~~~~~~~ ~~~~~~~~~~ )~~~~~~~|~ |~|~~~~~|< 8221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~>~~~~~~~~ 8401 ~~~|~~~~~~ ~~~~~~<~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8641 ~~~~~~~~~~ ~~~~~~~~~> (~~~~~~~~~ )~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~|~~ (~|~~~~~)~ ~~~~~~~~~~ 8761 ~~~~~~~~~~ ~~~~~~~~~( ~~~~~~~~~~ )~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~(~~~~~~ ~)~~~~~~~~ ~~~~~~~~~~ 8881 ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~(~~~~~~ ~~~~~~~~~~ 8941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~)~~|~~~~ 9001 ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~|~~~ ~|~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ 9061 ~~(~~~~~~~ )~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~|~~~~~ ~|~|~~~~~| 9121 ~~~~~~~~~~ ~~~~~(~~~~ ~~~)~~~~~~ ~~~~~~~~|~ ~~~~(~~~~~ )~~~~~~~~~ 9181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~|~~~~(~~ ~~)~~~~~~~ ~~~~~~~~~~ 9241 ~~|~~~~~~~ ~~|~|<~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9301 >~~~~~~~~~ ~~~~~~~~~~ ~~~-~~~~~~ ~~~~(~~~~~ ~~(~~~~~)~ ~~~~~)~~~~ 9361 ~~~~~-<~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~>~ ~~~~~~~~~~ ~~~~~~~~~~ 9421 ~|~~~~~~~~ (~~~~~)<~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~> 9541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9601 ~~~~~~~~~~ ~~~~~~~~~~ (~~~~~~~~~ ~~~~~)~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9661 ~~~~~~~~~~ ~~~~~~~<~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~>~~| ~~~~~~(~~~ )~~~~~~~~~ ~~~~~~~|~~ 9961 ~~~(~~~~~~ ~~~)~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10021 ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~~~ 10141 ~~~~~~~~~~ ~~~~~~~~~~ ~)~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10201 ~~~~~~~~~~ ~|~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10321 ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ||||| // LOCUS mt.S.sinus 10775 bp RNA RNA 11-JAN-191 DEFINITION Mitochondria Suillus sinuspaulianus. ACCESSION No information KEYWORDS No information. SOURCE Mitochondria Suillus sinuspaulianus. ORGANISM Mitochondria Suillus sinuspaulianus. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 10775) Corresponding GenBank entry: UNP00109 ; sequence of mt-LrRNA of S. sinus start at Cla I and end at EcoR I, sequence ; almost double-direction sequenced ; 5' and 3' termini unknown FULL_MTLRRNA_SINUS_CLAI_TO_ECORI BASE COUNT 1572 a 509 c 737 g 1398 t 6559 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~aucgau gacauauu-- --guuuuaac aucaa----- 241 --aaaaaaa- -------uuu aauuuauaag uauuuUAAAG GGGUUAUUA- ----AGGAUA 301 |ACU--AGC| AAA-UUUA-U A|aaaaag-- ---------- ----gagg-- -caaaa-gcc 361 a-aa-----a g|ccaucaa- uacagau-aa a-auuauaau uuuauauaug gaaucugugu 421 gcgagaaugu ggcg------ ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- -aucuaaggg aaaccu-ua- 541 ---------- ---------- ---<------ ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- ---------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 ---------- ---------- ---------- ---------- ---------- ---------- 781 ---------- ---------- ---------- -------->- uuauuaUUAC |UUCCCGAAG 841 UAA(AACA)U UUCAUUA--- -GGGAA---- ---------- ---------- ---AGGAAAG 901 GAAAUC(-AA CC)GA-G-AC |UCC-GAAA- -GUAA-U(-G GUGA)GUGAA -AUCGGAUU- 961 -AGCCUG<-- ---------- ---------- ---------- ---------- ---------- 1021 ---------- --auuuuuuu uauauaaaau aaaaauugau uaaaaauaua uuuaauuuua 1081 uucuuauuua aagaugacaa aauaagugaa aguuaaaau- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- --->------ 1201 ---------- ---------- --------cu ggugaaagu< ---------- ---------- 1261 ---------- ---------- ---------> (ggaa--)au uucau----- ua-|a(gaa) 1321 uaacuua(ac aaau-)uaaa uu--aguuuu uaguaugagu aaauau---- ----AAGUACG AUGAGA(--- ---------- 1561 ---gaua)AC UUGUCGGAAU ----auAGGG G(AACCA-U) -CCUCUA--A GGCUA-AGUA 1621 ---UuaUAAA U-UUAGCGAU AGUG-AA--- -AAAGUACC( -GUGA-)GGG ---AAAAGU- 1681 ugaaaagugu gagggucaau aauuauuaga uauagcuaga aauaauauau ugagaauuau 1741 aacccuugaa aguaaau--a acgc------ ---------- ------AGUG AA--AUAG-- 1801 ACUUG-AAUU AGUA-ACU-C U-<------- ---------- ---------- ---------- 1861 ----->AUAA GCAGUCGAAA Uuucu---<- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ------uuaa aauagaacg> (--------- 2041 --)---agag AUGACGGC-G UACCUU(UU- GCAUA)AUGG |GUC-AGCAA GU-----UA- 2101 AUAGGAGUAG CAA--gguua a------(-- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ------aaac c)-------- --uuag-cga 2521 aag-(-cga- )--cugucaa aa(aaga--) ua-augg--- -----guaaG UUACU-UCUA 2701 UUA-GACCCG AA-GCCAG-G UG-AUCUUUC UAG-GAC-CA GAUU------ ---------- 2761 -(-------- ---------- ---------- ---------- ---auaaug) ---------- 2821 -GAUCGAA-C GG-GUGAAU( GUUGCAU-A) AUUC-UCCGA --AGAGUCC- UUGAAAG-CG 2881 GC(G-AAAU) ACC-AAUC-U G-ACCUGGUG AUAGCU-GGU UUUCU--ACG AA-ACA-UAU 2941 (-UUAA)GUA UG-AC-AUCU ACAC<----- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ------->aa AAU|-UUAUG 3061 G|AGGUAC|A GCACggc-aa uu-ccc---- ---------- ---------< aacaaguuuu 3121 ag-------- ---aauagua cauuu----- ---------- ---------- ---------- 3181 ---------- --------uu au-------- ---------- -aaauuuauu uauuuuauua 3241 gga------- guuuagguug cggggaccuc gaaaaucuua ccaa>----- --------ug 3301 gaa---g-ug aAACUCGG-- AAUU|-ACAU -A-A---AUU ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- -gau--GG-U -AGAU-AUUC AGACU--GC- UC-AU(-GCU 3481 AAG)UUGGGU AG-UC----A AGACGG(AAA -CAG)CCG-A GAACA-CauG -AU-UAA--- 3541 --GGU-CCCC -AAU-GA-U- UAUUAAGUG- --------AA AUAAAGGAA- GUAACAAAUU 3601 G-A------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- AUGCA-GCUG U<-------- ---------- ---------- 3721 ---------- ---------- ---------- ---------- -->AAAGU-G AGC(UUGGUA 3781 GU-A)-GCUA --CUU|A(U- AA)U|GAUCG U(--GUAACA )AC|-GCAU- CAGCCCUAG-AG-U -GU-UGC|-G CCGAAAAU-- ---------- ---------- ----UCAACG 3961 GGUCU----- ---------- ---------- ---------- ---------- ---------- 4021 ---------- ---uAAAUAA UCA------- ---------- ---------- ---------- 4081 -------|AC CGAU--AUC| G--U-GU|UA Auuuuaaaua aaaauuuauu auuuguuuau 4141 aauuuauaga caaauauauc auaaacuuuu uauaaauaau uaauuauaca aaauaaaauu 4201 uuaucuugaa cuauuaauua auuauuuguu auuuaauuua auuauuuaaa aauuaauaua 4261 aauuaguuua auauuuccca uuuauaugaa auauguuaau aaaaaaaaua auacaaauuu 4321 uuaaauaauu aauuuuguuu uuaauaguuu aaaguauaau auaaauauaa uuuauaauua 4381 gauuuuuaua uuguuaauau auuauauuua ucuuaauuua auauauuauc uuuauuuu(- 4441 ------)--a uuuaaaauCU -A-----GGU AGUAG-AA|- CA-UUCAGAU A---UUUuaa 4501 auccccauga uuaac-agug (uuu----)< ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ------->ca uug--uuc-a u|AGGA---| AUCUGAAGAG AUAAUGC-UG 4681 AC|AUGAGUA -ACGU-AAAa aga-aa-g-- (aaaaaauua gaucgagagg ucuuugaagu 4741 uuuaaa---- -----)---c uuucu-|CGC C-GAAU-ACG AAA--GGGUu -|----auua 4801 gcuaa---ag <--------- --->(-auua aa)u-c|-aa cuaaug---- ---------- 4861 ---uuauag- -CGGUCUCUA A-G-G-U--- acaaaac(-c aau------- ------)<-- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 >-guuu---u g----G-CUG AU-GAGuu-- ----(----- ---------- ---------- 5041 ---------- ---------- ----)----- |-----|--- ---------- |--<------ 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ---------- ---------- 5221 ---------- ---------- ---------- ---------- ---------- ---------- 5281 ---------- ---------- ---------- ---------- ---------- ---------- 5341 ---------- ---------- ---------- ---------- ---------- ---------- 5401 ---------- ---------- ------->-- ---------- ---------- ---------- 5461 -----(---- ------)--- ---|------ --------|- ---------- -(-----)-- 5521 |--------- ---------- ---------- -----(---- )--------- ---------- 5581 --<------- ---------- ---------- ---------- ---------- ---------- 5641 ---------- ---------- ------->-- ---------- ---------- ------ ---------- ---------- -ACCGUA|CC 6481 C--UAAACC- -(GACACA)G G|UUCGU-AG GUA-(GAG-U A-----)-UA CUAAGGCG-| 6541 |--UAGAG-C U--AAAAGUU -GUUA-AGGA ACUCGGCAAA UUAUCC-UCA UAAG(UUCGA 6601 )CGACAA-GA GGA|------ ---------- -----(---- ---)------ ---------- 6781 ----|G(GCA )C--AAAAUC GGAAGCCC|C GA---CUG-U UU(ACUAA)A AA-CACA-GC 6841 UAUCUG|CA- -ACGAU---- ---------- (--GUAA--- ------)--- ---------- 6901 AUCAUAGUA- UAG-GUAGUG AGGUUU<--- ---------- ---------- ---------- 6961 ---------- ---------- -------->G CC-CG-AU|G CCAUUA-AUA UAAGAG-AAg 7021 --UGAUGG-- --(------- ---------- ---------- ---------- ---------- 7081 ---------- ---------- ---------g uaa)----CU GUUA-aUUAU C-GAAAAU-| 7141 CU-GGUU-AA U-|AG-C|-G -GUCUU-(AA CUAUG)AGGA UC|C(UAA)- GG-UAGCAAA 7201 AUA-AA-U-U |GGCCAU(-U AAAU-)GUGG UC|CG-GUAU CAAUAAUUUA A-CGAUGGCU 7261 UC-------- ---------- -------ACU GUCUCUACAA CUUG-CU-CA ----GUGAAA 7321 UU|G|AAUUA CC-CG(U-GC AGAUG)CGGG UUG----CCA CCAGGGGGAC GGGAAG-ACC 7381 CUAUGC-|-A GCUUC-UACU GU|--A-GUU AAU--CAUC| auuaa- ucuagaacaa -ccuuaguc- aau---AGCA 7501 AAUAGGUAU- -GUC------ ---------- --<------- ---------- ---------- 7561 ---------- ---------- ---------- ---------- ---------- ---------- 7621 ---------- ---------- ---------> --(----gau a)-------- -------gac 7681 aaaaauugga agaccuu|aa ---gucuag- g-g-u-uggg uuaa-uguuu accu-uu-uu 7741 auuu-(--aa caca)-aaau ---------- ---------- --------aa ---aaugg<- 7801 ---------- ---------- ---------- ---------- ---------- ---------- 7861 ---------- ---------- ---------- ---------- ---------- ---------- 7921 ---------- ---------- ---------- ---------- ---------- ---------- 7981 ---------- ---------- ---------- ---------- ---------- ---------- 8041 ---------- ---------- ---------- ---------- ---------- ---------- 8101 ---------- ---------- ----->GAGA GCUGA-U-UG -AUU-GG-CA GUUUGACUG( 8161 GGG)CG-GU- C|GUCUUU(- --------AA UAGAGUAGC- )AAAGUAC|A |U|CCaa-|< 8221 auauaaaauu aauuauaaaa uauuuacuau uaa-uaauau uaauguguaa auauucucac 8281 aaauaucaua uugcuguaaa uuuuuaauuu acuuuaacau caauuuuuau uuuuuguuuu 8341 uaua------ ---------- ---------- ---------- ---------- ->A-GG-UAU 8401 AGC|--UA-- ------<--- gaaauuga(a uggaga)uca au-------- -------uaa 8461 cc(agugaua a)gguuaugg a--------- ---------- ---------- ---------- 8521 ---------- ---------- ---------- ---------- ---------- ---------- 8581 ---------- ---------- ---------- ---------- ---------- ---------- 8641 ---------- ---------> (--------- )--------- ---------- ---------- 8701 ---------- ---------- ---------- -----GG|GC (G|CAAUG)G CGGUAAG-CA 8761 U-GC-UUAAC UGAUA-GAC( -uuaaaa--- )GUCGC-ACA G--------- ---------- 8821 ---------- --------AU AC-------- ---(GUAA-- -)-------- ----GUA-GG 8881 G|---CAUAG UGACC-CCUC GC-U------ ---------- AUA(------ ---------- 8941 ---------- ---------- ---------- ---------- ----UUAUGG A-)UA|GACG 9001 GGA-UCAAU- |UGAUAAAAG UUACGC|UAG G|GAUAACAG |G-CUG-A-U AGCCGGCGAG 9061 AG(U--ACAC )AUUGUCCCG --GCUGUUUG GC-ACCUCGA UGUC|GA--C U|U|AUCCU| 9121 AU-CC-UCCG GG-GG(--AA -GA)AGCUUG GAAG-GGU|U CGGC(UGUUC )GCCGA-UUA 9181 A--AAGGUU- --ACAUGAGU UGGGUUUAAU AC|GA-C(GU GA)GUCAGUA UGGUCCCUAU 9241 CU|UCUGG-U GG|G|<---- ---------- ---------- ---------- ---------- 9301 >ACAAA-UAG UA-AAA-AGG GGG-aga-cc uuc-(CAGU- AC(-GAAA)G GACCa)auag 9361 g--au-<--- ---------- ---------- -------->G UGUUUCU-CU AGUGUACCAA 9421 U|-UGU-UGA ------- 9541 UUG-GCAUAG UUGG--GUAG CCAC-AAACA UAU------- ---------- -------UAG 9601 ---------- -AUAAGAGCU (GAUUGU--A UAUAA)A-GC -AC-GAAACU AUCCCCU--- 9661 -AGAU--A-- -CUAUC---| ------(--- )--------- ---auua|ag 9961 aaa(uagaac a--)uuucuu u--------- ---------- ---------- ------aaua 10021 g|gaugcaaa ---------- ---------- ---------- ---------- ---------- 10081 ---------- ---ugaauuc ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~~~ 10141 ~~~~~~~~~~ ~~~~~~~~~~ ~)~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10201 ~~~~~~~~~~ ~|~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10321 ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ||||| // LOCUS mt.S.luteu 10775 bp RNA RNA 11-JAN-191 DEFINITION Mitochondria Suillus luteus. ACCESSION No information KEYWORDS No information. SOURCE Mitochondria Suillus luteus. ORGANISM Mitochondria Suillus luteus. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 10775) Corresponding GenBank entry: UNP00110 Thesis: Yunan Li, University of California at Berkeley BASE COUNT 348 a 168 c 224 g 315 t 9720 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 |~~~~~~~~| ~~~~~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~~(~~~~ 361 ~~~~~~~~~) ~|~~~~~~~~ ~~~~~~~|~~ ~~~~~~~(~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~)~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~(~~~~ 481 )~~~|~~~~~ ~~(~~~~~)~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~~~)~ 541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~<~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~>~ ~~~~~~~~~~ |~~~~~~~~~ 841 ~~~(~~~~)~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~(~~~ ~~)~~~~~~~ |~~~~~~~~~ ~~~~~~~(~~ ~~~~)~~~~~ ~~~~~~~~~~ 961 ~~~~~~~<~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~>~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~< ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~> (~~~~~~)~~ ~~~~~~~~~~ ~~~|~(~~~) 1321 ~~~~~~~(~~ ~~~~~)~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~<~~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ >~~~~~~~~~ ~~~~~~(~~~ ~~~~~~~~~~ 1561 ~~~~~~~)~~ ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~~~~) ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~( ~~~~~~)~~~ ~~~~~~~~~~ 1681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~<~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~>~~~~ ~~~~~~~~~~ ~~~~~~~~<~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~> (~~~~~~~~~ 2041 ~~)~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~~~)~~~~ |~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~(~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~)~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~(~~~~~ )~~~~~<~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~>~~~~ ~~(~~~~~~) ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2761 ~(~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~) ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~~~~~~( ~~~~~~~~~) ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~(~~~~~~) ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 (~~~~~)~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~>~~ ~~~|~~~~~~ 3061 ~|~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~< ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~>~~~~~ ~~~~~~~~~~ 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~(~~~~ 3481 ~~~)~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~~)~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~<~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~>~~~~~~~ ~~~(~~~~~~ 3781 ~~~~)-~~~~ ~~~~~|~(~~ ~~)~|~~~~~ ~(~~~~~~~~ )~~|~~~~~~ ~~~~~~<~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~>~~~-~~~~ ~~~~~~~|~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~|~~ ~~~~~~~~~| ~~~~~~~|~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ 4441 ~~~~~~)~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ 4501 ~~~~~~~~~~ ~~~~~~~~~~ (~~~~~~~)< ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4621 ~~~~~~~~~~ ~~~~~~~>~~ ~~~~~~~~~~ ~|~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~|~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ (~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~~~)~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|----~~~~ 4801 ~~~~~~~~~~ <~~~~~~~~~ ~~~>(-~~~~ ~~)~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~-~~~~~~~~ ~~~~~~~(~~ ~~~------- ------)<~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~-- 4981 >-~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~)~~~~~ |~~~~~|~~~ ~~~~~~~~~~ |~~<~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~>~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5461 ~~~~~(~~~~ ~~~~~~)~~~ ~~~|~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~(~~~~~)~~ 5521 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~(~~~~ )~~~~~~~~~ ~~~~~~~~~~ 5581 ~~<~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~>~~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~<~~~~~~ 5701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~>~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~|~~ 6481 ~~~~~~~~C- -(GACACA)G G|UUCGU-AG GUA-(GAG-U A-----)-UA CUAAGGCG-| 6541 |--UAGAG-C U--AAAAGUU -GUUA-AGGA ACUCGGCAAA UUAUCC-UCU AAAG(UUCGA 6601 )CGACAA-GA GGA|------ ---------- -----(---- ---)------ ---------- 6781 ----|G(GCA )C--AAAAUC GGAAGCCC|C GA---CUG-U UU(ACUAA)A AA-CACA-GC 6841 UAUCUG|CA- -ACGAU---- ---------- (--GUAA--- ------)--- ---------- 6901 AUCAUAGUA- UAG-GUAGUG AGGUUU<--- ---------- ---------- ---------- 6961 ---------- ---------- -------->G CC-CG-AU|G CCAUUA-AUA UAAGAG-AAG 7021 --UGAUGG-- --(------- ---------- ---------- ---------- ---------- 7081 ---------- ---------- ---------g uaa)----CU GUUA-aUUAU C-GAAAAU-| 7141 CU-GGUU-AA U-|AG-C|-G -GUCUU-(AA CUAUG)AGGA UC|C(UAA)- GG-UAGCAAA 7201 AUA-AA-U-U |GGCCAU(-U AAAU-)GUGG UC|CG-GUAU CAAUAAUUUA A-CGAUGGCU 7261 UC-------- ---------- -------ACU GUCUCUACAA CUUG-CU-CA ----GUGAAA 7321 UU|G|AAUUA CC-CG(U-GC AGAUG)CGGG UUG----CCA CCAGGGGGAC GGGAAG-ACC 7381 CUAUGC-|-A GCUUC-UACU GU|--A-GUU AAU--CAUC| auuaa- ucuagaacaa -cuuuaguc- aau---AGCA 7501 AAUAGGUAU- -GUC------ ---------- --<------- ---------- ---------- 7561 ---------- ---------- ---------- ---------- ---------- ---------- 7621 ---------- ---------- ---------> --(----gau a)-------- -------gac 7681 aaaaauugga agaccuu|aa ---gucuag- g-g-u-uggg uuaa-uguuu accu-uu-uu 7741 auaa-(--gc aaaa)-uuau ---------- ---------- --------ag ---aaugg<- 7801 ---------- ---------- ---------- ---------- ---------- ---------- 7861 ---------- ---------- ---------- ---------- ---------- ---------- 7921 ---------- ---------- ---------- ---------- ---------- ---------- 7981 ---------- ---------- ---------- ---------- ---------- ---------- 8041 ---------- ---------- ---------- ---------- ---------- ---------- 8101 ---------- ---------- ----->GAGA GCUGA-U-UG -AUU-GG-CA GUUUGACUG( 8161 GGG)CG-GU- C|GUCUUU(- --------AA UAGAGUAGC- )AAAGUAC|A |U|CCaa-|< 8221 auauaaaauu aa-uaaaaaa uauuuacuau uaaauaauau uaauguguaa auauucucac 8281 aaauaucaua uugcuguaaa uuuuuuauuu acuuuaacau caauuauuau uuuuuguuuu 8341 uaua------ ---------- ---------- ---------- ---------- ->A-GG-UAU 8401 AGC|--UA-- ------<--- gaaauuga(a uggaga)uca au-------- -------uaa 8461 cc(agugaua a)gguuaugg a--------- ---------- ---------- ---------- 8521 ---------- ---------- ---------- ---------- ---------- ---------- 8581 ---------- ---------- ---------- ---------- ---------- ---------- 8641 ---------- ---------> (--------- )--------- ---------- ---------- 8701 ---------- ---------- ---------- -----GG|GC (G|CAAUG)G CGGUAAG-CA 8761 U-GC-UUAAC UGAUA-GAC( -uuaaaa--- )GUCGC-ACA G--------- ---------- 8821 ---------- --------AU AC-------- ---(GUAA-- -)-------- ----GUA-GG 8881 G|---CAUAG UGACC-CCUC GC-U------ ---------- AUA(------ ---------- 8941 ---------- ---------- ---------- ---------- ----UAAUGG AA)UA|GACG 9001 GGGAUCAAU- |UGAUAAAAG UUACGC|UAG G|GAUAACAG |G-CUG-A-U AGCCGGCGAG 9061 AG(U--ACAC )AUUGUCCCG --GCUGUUUG GC-ACCUCGA UGUC|GA--C U|U|AUCCU| 9121 AU-CC-UCCG nn-nn(--nn -nn)nnnnnn nnnn-nnn|n nnnn(nnnnn )nnnnn-nnn 9181 n--nnnnnn- --nnnnnnnn nnnnnnnnnn nn|nn-n(nn nn)nnnnnnn nnnnnnnnnn 9241 nn|nnnnn-n nn|n|<---- ---------- ---------- ---------- ---------- 9301 >nnnnn-nnn nn-nnn-nnn nnn-nnn-nn nnn-(nnnn- nn(-nnnn)n nnnnn)nnnn 9361 n--nn-<--- ---------- ---------- -------->n nnnnnnn-nn nnnnnnnnnn 9421 n|-nnn-nnn ------- 9541 nnn-nnnnnn nnnn--nnnn nnnn-nnnnn nnn------- ---------- -------nnn 9601 ---------- -nnnnnnnnn (nnnnnn--n nnnnn)n-nn -nn-nnnnnn nnnnnnn--- 9661 -nnnn--n-- -nnnnn---| ------(--- )--------- ---nnnn|nn 9961 nnn(nnnnnn n--)nnnnnn n--------- ---------- ---------- ------nnnn 10021 n|nnnnnnnn ---------- ---------- ---------- ---------- ---------- 10081 ---------- ---nnnnnnn ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~~~ 10141 ~~~~~~~~~~ ~~~~~~~~~~ ~)~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10201 ~~~~~~~~~~ ~|~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10321 ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ||||| // LOCUS mt.T.papil 10775 bp RNA RNA 11-JAN-191 DEFINITION Mitochondria Trimorphomyces papilionaceus. ACCESSION No information KEYWORDS No information. SOURCE Mitochondria Trimorphomyces papilionaceus. ORGANISM Mitochondria Trimorphomyces papilionaceus. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 10775) Corresponding GenBank entry: X73672 ID TPLSRRA standard; DNA; ORG; 2817 BP. XX AC X73672; XX DT 08-JUL-1993 (Rel. 36, Created) DT 08-JUL-1993 (Rel. 36, Last updated, Version 3) XX DE T.papilionaceus mitochondrion gene for large subunit rRNA, exons 1 DE and 2 XX KW large subunit ribosomal RNA. XX OS Trimorphomyces papilionaceus OC Eukaryota; Plantae; Thallobionta; Basidiomycotina; OC Phragmobasidiomycetes; Heterobasidiomycetidae; Eutremellales; OC Tremellaceae. XX OG Mitochondrion XX RN [1] RA Hong S.G.; RT ; RL Unpublished. XX RN [2] RP 1-2817 RA Hong S.G.; RT ; RL Submitted (28-JUN-1993) on tape to the EMBL Data Library by: RL S.G. Hong, Seoul National University, Dept of Microbiology, San RL 56-1 Shinlim-Dong, Kwanak-ku, Seoul 151-742, KOREA XX FH Key Location/Qualifiers FH FT source 1..2817 FT /organism="Trimorphomyces papilionaceus" FT /mitochondrion FT mRNA join(1..1090,2681..2817) FT /note="large subunit RNA" FT /gene="LSU rRNA" FT intron 1091..2680 FT /number=1 FT /gene="LSU rRNA" FT exon 1..1090 FT /number=1 FT /gene="LSU rRNA" FT CDS 1510..2193 FT /note="orf" FT exon 2681..2817 FT /number=2 FT /gene="LSU rRNA" XX SQ Sequence 2817 BP; 952 A; 458 C; 552 G; 855 T; 0 other; BASE COUNT 404 a 196 c 277 g 350 t 9548 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 |~~~~~~~~| ~~~~~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~~(~~~~ 361 ~~~~~~~~~) ~|~~~~~~~~ ~~~~~~~|~~ ~~~~~~~(~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~)~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~(~~~~ 481 )~~~|~~~~~ ~~(~~~~~)~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~~~)~ 541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~<~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~>~ ~~~~~~~~~~ |~~~~~~~~~ 841 ~~~(~~~~)~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~(~~~ ~~)~~~~~~~ |~~~~~~~~~ ~~~~~~~(~~ ~~~~)~~~~~ ~~~~~~~~~~ 961 ~~~~~~~<~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~>~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~< ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~> (~~~~~~)~~ ~~~~~~~~~~ ~~~|~(~~~) 1321 ~~~~~~~(~~ ~~~~~)~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~<~~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ >~~~~~~~~~ ~~~~~~(~~~ ~~~~~~~~~~ 1561 ~~~~~~~)~~ ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~~~~) ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~( ~~~~~~)~~~ ~~~~~~~~~~ 1681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~<~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~>~~~~ ~~~~~~~~~~ ~~~~~~~~<~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~> (~~~~~~~~~ 2041 ~~)~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~~~)~~~~ |~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~(~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~)~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~(~~~~~ )~~~~~<~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~>~~~~ ~~(~~~~~~) ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~ucu auccugc-ca gacu------ ---------- 2761 -(-------- ---------- ---------- ---------- ------aua) ---------- 2821 -GGUCGAA-c gg--uucau( guugcag-u) aug--uccga --ugagcug- aggaugu-ag 2881 gu(g--aag) gcc-aauc-u g-acaaagau AUAGCU-GGU ACUCC--UCG AA-ACG-UAU 2941 (-AUAG)GUA CG-GC-CCUC UAAuua gau|-uuacg 3061 c|AGGUAC|A GCACug--au ug-cc----- ---------- ---------< auacuaugcu 3121 aaac-----a aaaauuuag- ---c------ ---------- ---------- ---------- 3181 ---------- ---------- ---------- ---------- -----uuauu ua-------- 3241 ---------- guu-caauug -gggga-ucg ugagauucua ccau------ --------ug 3301 gua---g-uu aacCUCGG-- AAUU|-ACGU -aua---auu ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- -gau--AU-A -GAGG-AGAC AGACU--AU- UC-AU(-GAU 3481 AAG)GUG-AU AG-UC----G AGACGG(AAA -CAG)CCG-U GAGCA-U-AG -AU-AAA--- 3541 --GGU-CCCA aAAU-AG-U- GGUUAAGUG- --------AA AAUAAGGAa- guuaugaucc 3601 c-C------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- AUACA-GCUA U<-------- ---------- ---------- 3721 ---------- ---------- ---------- ---------- -->AAAGU-G UGC(UCGGAA 3781 GU-A)-GCAA -UCUU|U(U- AA)u|gauag u(--guaaca )ac|-uua-- --guagagg-au-c -au-agc|-g ccuaagau-- ---------- ---------- -----UAACG 3961 GGUCU----- ---------- ---------- ---------- ---------- ---------- 4021 ---------- ---aagacca cuu------- ---------- ---------- ---------- 4081 -------|AC CGAU--ACU| A--U-GC|c- guuaguuguu ---------- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- ---------- ---------- ---------- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- --------(u 4441 aauuau)-aa cagcuaa-UU -G-----GGU AGAGG-AG|- CA-UUCAGC- ----auggua 4501 g--------a agaau-agug (uuu----)< ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ------->ca uua--uuu-c g|acau---| AGCUGAAGAG AAUAUGC-CA 4681 AC|AUGAGUA -ACGU-AGAa aga-ag-u-- (uauaau--- ---------- ---------- 4741 ---------- -----)---a cuucu-|CGC C-GAAU-GAG AAA--GGGuu -|----ccau 4801 auaaa---ug <--------- --->(--uua aa)c-a|-ga uauggg---- ---------- 4861 ---uuaaaa- -CGGCCUCUA A-G-a-u--- aaauagc(ua uuag------ ------)<-- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 >-gcua---u uu---a-uag au-gaguu-- ----(----- ---------- ---------- 5041 ---------- ---------- ----)----- |-----|--- ---------- |--<------ 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ---------- ---------- 5221 ---------- ---------- ---------- ---------- ---------- ---------- 5281 ---------- ---------- ---------- ---------- ---------- ---------- 5341 ---------- ---------- ---------- ---------- ---------- ---------- 5401 ---------- ---------- ------->-- ---------- ---------- ---------- 5461 -----(---- ------)--- ---|------ --------|- ---------- -(-----)-- 5521 |--------- ---------- ---------- -----(---- )--------- ---------- 5581 --<------- ---------- ---------- ---------- ---------- ---------- 5641 ---------- ---------- ------->-- ---------- ---------- ------ ---------- ---------- -ACCGUA|CC 6481 C--UAAACC- -(GACACA)G G|UUCUC-GG GUA-(GAG-U A-----)-UA CUAAGGCG-| 6541 |--AUGAG-A U--AA--uac -uau--AUAG ACUCGGCAAA U-GCAU-CCG UACA(CUCGA 6601 )UAAGAA-GG AUG|------ ---------- -----(---- ---)------ ---------- 6781 ----|G(ACA )C--AUAAUC GGAGGC-A|U GA---CUGGU UU(ACCAA)A CA-CA---GG 6841 UAUCUG|CU- -AUAAU---- ---------- (-UUAAU--- ------)--- ---------- 6901 UAUGUUGUA- UAG-GUACUG AAUCUU<--- ---------- ---------- ---------- 6961 ---------- ---------- -------->G UUCCG-AU|G CCAUGA-GUA UAA------- 7021 --UAAUAG-- --(------- ---------- ---------- ---------- ---------- 7081 ---------- --------gg uaauaucuua ucu)----CU GUUA-a-aac c------U-| 7141 CU-GGUC-AA U-|GA-U|-A -GUCUU-(AA CUAUA)AGGA UU|C(UAA)- GG-UAGCUGA 7201 AUG-CCGUGU |GGCCGU(-U AAAU-)GCGG UC|CU-GCAU GAAUAGAGUA A-CAAUGCCU 7261 CU-------- ---------- -------GCU GUCUCAUAUA GUAU-CU-CA ----GUGAAA 7321 UU|G|AAUUA GC-CG(U-GA AGAUG)CGGU UUA----CGU GCGGGUAGAC GGGAgg-gc- 7381 ---------- ---------- ---------- ---------| ~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~<~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~> ~~(~~~~~~~ ~)~~~~~~~~ ~~~~~~~~~~ 7681 ~~~~~~~~~~ ~~~~~~~|~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7741 ~~~~~(~~~~ ~~~~)~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~<~ 7801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~>~~~~ ~~~~~~~-~~ -~~~~~~~~~ ~~~~~~~~~( 8161 ~~~)~~~~~~ ~|~~~~~~(~ ~~~~~~~~~~ ~~~~~~~~~~ )~~~~~~~|~ |~|~~~~~|< 8221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~>~~~~~~~~ 8401 ~~~|~~~~~~ ~~~~~~<~~~ ~~~~~~~~(~ ~~~~~~)~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8461 ~~(~~~~~~~ ~)~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8641 ~~~~~~~~~~ ~~~~~~~~~> (~~~~~~~~~ )~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~|~~ (~|~~~~~)~ ~~~~~~~~~~ 8761 ~~~~~~~~~~ ~~~~~~~~~( ~~~~~~~~~~ )~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~(~~~~~~ ~)~~~~~~~~ ~~~~~~~~~~ 8881 ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~(~~~~~~ ~~~~~~~~~~ 8941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~)~~|~~~~ 9001 ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~|~~~ ~|~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ 9061 ~~(~~~~~~~ )~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~|~~~~~ ~|~|~~~~~| 9121 ~~~~~~~~~~ ~~~~~(~~~~ ~~~)~~~~~~ ~~~~~~~~|~ ~~~~(~~~~~ )~~~~~~~~~ 9181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~|~~~~(~~ ~~)~~~~~~~ ~~~~~~~~~~ 9241 ~~|~~~~~~~ ~~|~|<~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9301 >~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~~ ~~(~~~~~)~ ~~~~~)~~~~ 9361 ~~~~~~<~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~>~ ~~~~~~~~~~ ~~~~~~~~~~ 9421 ~|~~~~~~~~ (~~~~~)<~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~> 9541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9601 ~~~~~~~~~~ ~~~~~~~~~~ (~~~~~~~~~ ~~~~~)~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9661 ~~~~~~~~~~ ~~~~~~~<~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~>~~| ~~~~~~(~~~ )~~~~~~~~~ ~~~~~~~|~~ 9961 ~~~(~~~~~~ ~~~)~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10021 ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~~~ 10141 ~~~~~~~~~~ ~~~~~~~~~~ ~)~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10201 ~~~~~~~~~~ ~|~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10321 ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ||||| // LOCUS mt.L.lacca 10775 bp RNA RNA 21-JUL-1998 DEFINITION Mitochondrion Laccaria laccata.; . ACCESSION AF006486 KEYWORDS . SOURCE Mitochondrion Laccaria laccata. ORGANISM Mitochondrion Laccaria laccata. REFERENCE 1 (bases 1 to 538) AUTHORS Selosse,M.A., Martin,F. and Le Tacon,F. TITLE ectomycorrhizal basidiomycete Laccaria bicolor in forest plantations Does introduced mitochondrial genome persist independantly of co-introduced nuclear genomes? The case of the JOURNAL Symbiosis (1997) In press STANDARD No information REFERENCE 2 (bases 1 to 1830) AUTHORS Selosse,M.A., Martin,F. and Le Tacon,F. TITLE Survival of an introduced ectomycorrhizal Laccaria bicolor strain in an European forest plantation confirmed by mitochondrial analysis JOURNAL New Phytol. (1998) In press STANDARD No information REFERENCE 3 (bases 1 to 538) AUTHORS Selosse,M.A., Martin,F. and Le Tacon,F. TITLE Direct Submission JOURNAL Submitted (02-JUN-1997) Forest Microbiology, INRA, Centre de Recherche de Nancy, Champenoux, 54 54280, France STANDARD No information REFERENCE 4 (bases 1 to 1830) AUTHORS Selosse,M.A., Martin,F. and Le Tacon,F. TITLE Direct Submission JOURNAL Submitted (21-JUL-1998) Forest Microbiology, INRA, Centre de Recherche de Nancy, Champenoux, 54 54280, France STANDARD No information COMMENTS Sequence information (bases 1 to 10775) Corresponding GenBank entry: AF006486 BASE COUNT 657 a 263 c 343 g 567 t 8945 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 |~~~~~~~~| ~~~~~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~~(~~~~ 361 ~~~~~~~~~) ~|~~~~~~~~ ~~~~~~~|~~ ~~~~~~~(~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~)~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~(~~~~ 481 )~~~|~~~~~ ~~(~~~~~)~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~~~)~ 541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~<~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~>~ ~~~~~~~~~~ |~~~~~~~~~ 841 ~~~(~~~~)~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~(~~~ ~~)~~~~~~~ |~~~~~~~~~ ~~~~~~~(~~ ~~~~)~~~~~ ~~~~~~~~~~ 961 ~~~~~~~<~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~>~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~< ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~> (~~~~~~)~~ ~~~~~~~~~~ ~~~|~(~~~) 1321 ~~~~~~~(~~ ~~~~~)~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~<~~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ >~~~~~~~~~ ~~~~~~(~~~ ~~~~~~~~~~ 1561 ~~~~~~~)~~ ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~~~~) ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~( ~~~~~~)~~~ ~~~~~~~~~~ 1681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~<~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~>~~~~ ~~~~~~~~~~ ~~~~~~~~<~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~> (~~~~~~~~~ 2041 ~~)~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~~~)~~~~ |~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~(~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~)~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~(~~~~~ )~~~~~<~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~>~~~~ ~~(~~~~~~) ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2761 ~(~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~) ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~~~~~~( ~~~~~~~~~) ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~(~~~~~~) ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 (~uuga)ugu cu-ac----- ----<----- ---------- ---------- ---------- 3001 ---------- ---------- ---------- --aauaauau aaaaaca>ga AAU|-UUAUG 3061 G|AGGUAC|A GCAaggc-aa uu-ccc---- ---------- ---------< aacaaauuua 3121 aggu-----a aaacaaaaau ucuuuuuuug uuuuauauuu uuauuauuau uuuuauaauu 3181 auaaaaauuc uauuuauaag auaaaauaau uuauaucaaa uuaacagacu caauaaguag 3241 ccuuaucugc guucagguug cggggaucua gacaaucuua ccuu>----- --------ug 3301 gaa---g-cg aauCUCGG-- AAUU|-ACAU -A-A---AUU ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- -gau--GG-U -AGAU-AUUC AGACU--GC- UC-AU(-GCU 3481 AAG)UUGGGC AG-UC----A AGACGG(AAA -CAG)CCG-A GAACA-C-UG -AU-CAA--- 3541 --GGU-CCCA -AAU-GA-U- UGUUAAGUG- --------AA AUUAAGGAC- GUAGCAAUAU 3601 cga------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- AUACA-GCUG U<-------- ---------- ---------- 3721 ---------- ---------- ---------- ---------- -->GAAGU-G AGC(CUGGCA 3781 GU-C)-GCUA --CUU|A(U- AA)U|GAUCG U(auguaaca )AC|-GCAU- CAGCAGuag-au-a -gu-aGC|-G CCGAAAAU-- ---------- ---------- ----UUAACG 3961 GGUCU----- ---------- ---------- ---------- ---------- ---------- 4021 ---------- ---uAAACAA UCA------- ---------- ---------- ---------- 4081 -------|AC CGAU--AUC| G--U-GU|U- gguuaauaau aa-------- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- ---------- ---------- ---------- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- --------(u 4441 aaau--)uug uuauuaauCU -A-----GGU AGUAG-AA|- CA-UUCAGUA aaacuuuaaa 4501 u--------- cgaau-agug (uuu----)< ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ------->ca uua--uuuug u|agga---| UACUGAAGAG AGAAUGC-UG 4681 AC|AUGAGUA -ACGU-AAAa aga-ag-u-- (uauaau--- ---------- ---------- 4741 ---------- -----)---a cuucu-|CGC C-GAAU-ACG AAA--GGGUu -|gcaaauag 4801 g-aaa---gg <--------- --->(--uua au)c-c|-gu uuuguu---- ---------- 4861 ---uuaaug- -CGGCCUCUA A-G-g-g--- auguagc(-u aaa------- ------)<-- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 >-gcua---- cu---a-cuG AU-GAGuc-- ----(----- ---------- ---------- 5041 ---------- ---------- ----)----- |-----|--- ---------- |--<------ 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ---------- ---------- 5221 ---------- ---------- ---------- ---------- ---------- ---------- 5281 ---------- ---------- ---------- ---------- ---------- ---------- 5341 ---------- ---------- ---------- ---------- ---------- ---------- 5401 ---------- ---------- ------->-- ---------- ---------- ---------- 5461 -----(---- ------)--- ---|------ --------|- ---------- -(-----)-- 5521 |--------- ---------- ---------- -----(---- )--------- ---------- 5581 --<------- ---------- ---------- ---------- ---------- ---------- 5641 ---------- ---------- ------->-- ---------- ---------- ------ ---------- ---------- -ACCGUA|CC 6481 C--UAAACC- -(GACACA)G G|UUCGU-AG GUA-(GAG-A A-----)-UA CUAAGGCG-| 6541 |--UAGAG-C U--AAAAGUU -GUUA-AGGA ACUCGGCAAG AUCUCC-UCC UAAG(UUUGA 6601 )CGACAA-GA GGG|------ ---------- -----(---- ---)------ ---------- 6781 ----|G(ACA )C--AAAAUC GGAGGCCA|C GA---CUG-U UU(ACUAA)A AA-CACA-AC 6841 ACAGUG|CA- -AUCAU---- ---------- (--UAAU--- ------)--- ---------- 6901 AUGAUAGUA- UAC-UGUGUG AAAUUU<--- ---------- ---------- ---------- 6961 ---------- ---------- -------->G CC-CG-AU|G CCAUUA-AUA UAAGAG-CGa 7021 --UCAUGG-- --(------- ---------- ---------- ---------- ---------- 7081 ---------- ---------- ---------u uuu)----CU GUGA-uUAAU C-GAAAAU-| 7141 CU-GGUU-AA U-|AG-C|-G -GUCUU-(AA CUAUG)AGGA UC|C(UAA)- GG-UAGCAAA 7201 AUA-AA-U-U |GGCCUU(-U AAAU-)GAGG UC|CG-GUAU CAAUAAUGUA A-CGAUGGUC 7261 UC-------- ---------- -------ACU GUCUCUACAA CUUG-CU-CA ----GUGAAA 7321 UU|G|AAUUA CG-CG(U-GC AGAUG)CGCG UUG----CCU UCAGGGGGAC GGGAAG-ACC 7381 CUAUGC-|-A GCUUC-UACU GU|--A-GUU AGU--UAUC| augaa- ucuagaacaa -ucaaaauu- aau---AGUG 7501 AAUAGGGAA- -GUC------ ---------- --<------- ---------- ---------- 7561 ---------- ---------- ---------- ---------- ---------- ---------- 7621 ---------- ---------- ---------> --(----gau a)-------- -------gac 7681 aaauagugga aaccuua|aa ----auucu- g-a-u-uggg uuua-uguuu acc--uu-aa 7741 auuu-(--aa uaaa)-aaa- ---------- ---------- ---------- ---a--gg<- 7801 ---------- ---------- ---------- ---------- ---------- ---------- 7861 ---------- ---------- ---------- ---------- ---------- ---------- 7921 ---------- ---------- ---------- ---------- ---------- ---------- 7981 ---------- ---------- ---------- ---------- ---------- ---------- 8041 ---------- ---------- ---------- ---------- ---------- ---------- 8101 ---------- ---------- ----->GAGA GUUUA-C-UA -AUU-GG-CA GUUUGACUG( 8161 GGG)CG-GU- C|GUCUUU(- --------AA UAGAGUAGC- )AAAGUAC|A |U|CCaa-|< 8221 auauuucauu uaaaacuaaa aauuuauugu uuuauaaauu uuauuacaaa aaacuuuauu 8281 uuauuuuagu auaauuuaaa guaauaauua auuuuaauua auuaacauuc uaaauuuuuc 8341 uuucuaauca uuaauuuuau a--------- ---------- ---------- ->A-GG-UAU 8401 AGC|--UA-- ------<--- gaaauuga(a uggaga)uca au-------- -------caa 8461 cc(aguga-a g)gguugcgc a--------- ---------- ---------- ---------- 8521 ---------- ---------- ---------- ---------- ---------- ---------- 8581 ---------- ---------- ---------- ---------- ---------- ---------- 8641 ---------- ---------> (--------- )--------- ---------- ---------- 8701 ---------- ---------- ---------- -----GA|GU (U|CAAUG)G CGAUAAG-CA 8761 U-GC-UUAAC UGAAA-GAC( -cuaaaa--- )GUCGC-ACA G--------- ---------- 8821 ---------- --------AU AC-------- ---(GUAA-- -)-------- ----GUA-GG 8881 G|---CAUAG UGACC-CCUC GC-U------ ---------- AUA(------ ---------- 8941 ---------- ---------- ---------- ---------- ----AUAUGG GA)UA|GACG 9001 GGGAUCAAU- |UGAUAAAAG UUACGC|UAG G|GAUAA~~~ |~~~~~~~~~ ~~~~~~~~~~ 9061 ~~(~~~~~~~ )~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~|~~~~~ ~|~|~~~~~| 9121 ~~~~~~~~~~ ~~~~~(~~~~ ~~~)~~~~~~ ~~~~~~~~|~ ~~~~(~~~~~ )~~~~~~~~~ 9181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~|~~~~(~~ ~~)~~~~~~~ ~~~~~~~~~~ 9241 ~~|~~~~~~~ ~~|~|<~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9301 >~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~~ ~~(~~~~~)~ ~~~~~)~~~~ 9361 ~~~~~~<~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~>~ ~~~~~~~~~~ ~~~~~~~~~~ 9421 ~|~~~~~~~~ (~~~~~)<~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~> 9541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9601 ~~~~~~~~~~ ~~~~~~~~~~ (~~~~~~~~~ ~~~~~)~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9661 ~~~~~~~~~~ ~~~~~~~<~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~>~~| ~~~~~~(~~~ )~~~~~~~~~ ~~~~~~~|~~ 9961 ~~~(~~~~~~ ~~~)~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10021 ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~~~ 10141 ~~~~~~~~~~ ~~~~~~~~~~ ~)~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10201 ~~~~~~~~~~ ~|~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10321 ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ||||| // LOCUS mt.L.bic.1 10775 bp RNA RNA 04-AUG-1998 DEFINITION Mitochondrion Laccaria bicolor.; . ACCESSION AF079306 KEYWORDS . SOURCE Mitochondrion Laccaria bicolor. ORGANISM Mitochondrion Laccaria bicolor. REFERENCE 1 (bases 1 to 1839) AUTHORS Selosse,M.A., Martin,F. and Le Tacon,F. TITLE Survival of an introduced ectomycorrhizal Laccaria bicolor strain in an European forest plantation confirmed by mitochondrial analysis JOURNAL New Phytol. (1998) In press STANDARD No information REFERENCE 2 (bases 1 to 1839) AUTHORS Selosse,M.A., Martin,F. and Le Tacon,F. TITLE Direct Submission JOURNAL Submitted (20-JUL-1998) Microbiologie Forestiere, INRA, Foret d'Amance, Champenoux 54280, France STANDARD No information COMMENTS Sequence information (bases 1 to 10775) Corresponding GenBank entry: AF079306 BASE COUNT 663 a 264 c 344 g 568 t 8936 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 |~~~~~~~~| ~~~~~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~~(~~~~ 361 ~~~~~~~~~) ~|~~~~~~~~ ~~~~~~~|~~ ~~~~~~~(~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~)~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~(~~~~ 481 )~~~|~~~~~ ~~(~~~~~)~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~~~)~ 541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~<~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~>~ ~~~~~~~~~~ |~~~~~~~~~ 841 ~~~(~~~~)~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~(~~~ ~~)~~~~~~~ |~~~~~~~~~ ~~~~~~~(~~ ~~~~)~~~~~ ~~~~~~~~~~ 961 ~~~~~~~<~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~>~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~< ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~> (~~~~~~)~~ ~~~~~~~~~~ ~~~|~(~~~) 1321 ~~~~~~~(~~ ~~~~~)~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~<~~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ >~~~~~~~~~ ~~~~~~(~~~ ~~~~~~~~~~ 1561 ~~~~~~~)~~ ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~~~~) ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~( ~~~~~~)~~~ ~~~~~~~~~~ 1681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~<~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~>~~~~ ~~~~~~~~~~ ~~~~~~~~<~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~> (~~~~~~~~~ 2041 ~~)~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~~~)~~~~ |~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~(~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~)~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~(~~~~~ )~~~~~<~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~>~~~~ ~~(~~~~~~) ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2761 ~(~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~) ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~~~~~~( ~~~~~~~~~) ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~(~~~~~~) ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 (~uuga)ugu cu-ac----- ----<----- ---------- ---------- ---------- 3001 ---------- ---------- ---------- -aaauaauau aaaaaca>ga AAU|-UUAUG 3061 G|AGGUAC|A GCAaggc-aa uu-ccc---- ---------- ---------< aacaaauuua 3121 aggu-----a aaacaaaaau ucuuuucuug uuuuauauuu uuauuauuau uuuuauaaua 3181 auaaaaauuc uauuuauaag auaaaauaau uuauauuaaa uuaacagaca caauaaguag 3241 ccuuaucugc guucagguug cggggaucua gaaaaucuua ccuu>----- --------ug 3301 gaa---g-cg aauCUCGG-- AAUU|-ACAU -A-A---AUU ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- -gau--GG-U -AGAU-AUUC AGACU--GC- UC-AU(-GCU 3481 AAG)UUGGGC AG-UC----A AGACGG(AAA -CAG)CCG-A GAACA-C-UG -AU-CAA--- 3541 --GGU-CCCA -AAU-GA-U- UGUUAAGUG- --------AA AUUAAGGAC- GUAGCAaUAU 3601 cga------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- AUACA-GCUG U<-------- ---------- ---------- 3721 ---------- ---------- ---------- ---------- -->GAAGU-G AGC(CUGGCA 3781 GU-C)-GCUA --CUU|A(U- AA)U|GAUCG U(auguaaca )AC|-GCAU- CAGCAGuag-au-a -gu-aGC|-G CCGAAAAU-- ---------- ---------- ----UUAACG 3961 GGUCU----- ---------- ---------- ---------- ---------- ---------- 4021 ---------- ---uAAACAA UCA------- ---------- ---------- ---------- 4081 -------|AC CGAU--AUC| G--U-GU|U- gguuaauaau aa-------- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- ---------- ---------- ---------- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- --------(u 4441 aaau--)uug uuauuaauCU -A-----GGU AGUAG-AA|- CA-UUCAGUA aaacuuuaaa 4501 u--------- caaau-agug (uuu----)< ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ------->ca uua--uuuug u|agga---| UACUGAAGAG AGAAUGC-UG 4681 AC|AUGAGUA -ACGU-AAAa aga-ag-u-- (uauaau--- ---------- ---------- 4741 ---------- -----)---a cuucu-|CGC C-GAAU-ACG AAA--GGGUu -|gcaaauag 4801 g-aaa---gg <--------- --->(--uua au)c-c|-gu uuuguu---- ---------- 4861 ---uuaaug- -CGGCCUCUA A-G-g-g--- auguagc(-u aaa------- ------)<-- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 >-gcua---- cu---a-cuG AU-GAGuc-- ----(----- ---------- ---------- 5041 ---------- ---------- ----)----- |-----|--- ---------- |--<------ 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ---------- ---------- 5221 ---------- ---------- ---------- ---------- ---------- ---------- 5281 ---------- ---------- ---------- ---------- ---------- ---------- 5341 ---------- ---------- ---------- ---------- ---------- ---------- 5401 ---------- ---------- ------->-- ---------- ---------- ---------- 5461 -----(---- ------)--- ---|------ --------|- ---------- -(-----)-- 5521 |--------- ---------- ---------- -----(---- )--------- ---------- 5581 --<------- ---------- ---------- ---------- ---------- ---------- 5641 ---------- ---------- ------->-- ---------- ---------- ------ ---------- ---------- -ACCGUA|CC 6481 C--UAAACC- -(GACACA)G G|UUCGU-AG GUA-(GAG-A A-----)-UA CUAAGGCG-| 6541 |--UAGAG-C U--AAAAGUU -GUUA-AGGA ACUCGGCAAG AUCUCC-UCC UAAG(UUUGA 6601 )CGACAA-GA GGG|------ ---------- -----(---- ---)------ ---------- 6781 ----|G(ACA )C--AAAAUC GGAGGCCA|C GA---CUG-U UU(ACUAA)A AA-CACA-AC 6841 ACAGUG|CA- -AUCAU---- ---------- (--UAAU--- ------)--- ---------- 6901 AUGAUAGUA- UAC-UGUGUG AAAUUU<--- ---------- ---------- ---------- 6961 ---------- ---------- -------->G CC-CG-AU|G CCAUUA-AUA UAAGAG-CGa 7021 --UCAUGG-- --(------- ---------- ---------- ---------- ---------- 7081 ---------- ---------- ---------u uuu)----CU GUGA-uUAAU C-GAAAAU-| 7141 CU-GGUU-AA U-|AG-C|-G -GUCUU-(AA CUAUG)AGGA UC|C(UAA)- GG-UAGCAAA 7201 AUA-AA-U-U |GGCCUU(-U AAAU-)GAGG UC|CG-GUAU CAAUAAUGUA A-CGAUGGUC 7261 UC-------- ---------- -------ACU GUCUCUACAA CUUG-CU-CA ----GUGAAA 7321 UU|G|AAUUA CG-CG(U-GC AGAUG)CGCG UUG----CCU UCAGGGGGAC GGGAAG-ACC 7381 CUAUGC-|-A GCUUC-UACU GU|--A-GUU AGU--UAUC| auaaa- ucuagaacaa -ucaaaauu- aau---AGUG 7501 AAUAGGUAA- -GUC------ ---------- --<------- ---------- ---------- 7561 ---------- ---------- ---------- ---------- ---------- ---------- 7621 ---------- ---------- ---------> --(----gau a)-------- -------gac 7681 aaauagugga aaccuua|aa ----auucu- g-a-u-uggg uuua-uguuu acc--uu-aa 7741 auuu-(--aa uaaa)-aaa- ---------- ---------- ---------- ---a--gg<- 7801 ---------- ---------- ---------- ---------- ---------- ---------- 7861 ---------- ---------- ---------- ---------- ---------- ---------- 7921 ---------- ---------- ---------- ---------- ---------- ---------- 7981 ---------- ---------- ---------- ---------- ---------- ---------- 8041 ---------- ---------- ---------- ---------- ---------- ---------- 8101 ---------- ---------- ----->GAUA GUUUA-C-UA -AUU-GG-CA GUUUGACUG( 8161 GGG)CG-GU- C|GUCUUU(- --------AA UAGAGUAGC- )AAAGUAC|A |U|CCaa-|< 8221 auauuucauu uaaaacuaaa aauuuauugu uuuauaaauu uuauuacaaa aaac-----u 8281 uuauuuuagu auaauuuaaa guaauaauua auuuuaauua auuaacauuc uaaauuuuuc 8341 uuucuaauca uuaauuuuau a--------- ---------- ---------- ->A-GG-UAU 8401 AGC|--UA-- ------<--- gaaauuga(a uggaga)uca au-------- -------caa 8461 cc(aguga-a g)gguugcgc a--------- ---------- ---------- ---------- 8521 ---------- ---------- ---------- ---------- ---------- ---------- 8581 ---------- ---------- ---------- ---------- ---------- ---------- 8641 ---------- ---------> (--------- )--------- ---------- ---------- 8701 ---------- ---------- ---------- -----GA|GU (U|CAAUG)G CGAUAAG-CA 8761 U-GC-UUAAC UGAAA-GAC( -cuaaaa--- )GUCGC-ACA G--------- ---------- 8821 ---------- --------AU AC-------- ---(GUAA-- -)-------- ----GUA-GG 8881 G|---CAUAG UGACC-CCUC GC-U------ ---------- AUA(------ ---------- 8941 ---------- ---------- ---------- ---------- ----AUAUGG GA)UA|GACG 9001 GGGAUCAAU- |UGAUAAAAG UUACGC|UAG G|GAUAA~~~ |~~~~~~~~~ ~~~~~~~~~~ 9061 ~~(~~~~~~~ )~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~|~~~~~ ~|~|~~~~~| 9121 ~~~~~~~~~~ ~~~~~(~~~~ ~~~)~~~~~~ ~~~~~~~~|~ ~~~~(~~~~~ )~~~~~~~~~ 9181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~|~~~~(~~ ~~)~~~~~~~ ~~~~~~~~~~ 9241 ~~|~~~~~~~ ~~|~|<~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9301 >~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~~ ~~(~~~~~)~ ~~~~~)~~~~ 9361 ~~~~~~<~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~>~ ~~~~~~~~~~ ~~~~~~~~~~ 9421 ~|~~~~~~~~ (~~~~~)<~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~> 9541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9601 ~~~~~~~~~~ ~~~~~~~~~~ (~~~~~~~~~ ~~~~~)~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9661 ~~~~~~~~~~ ~~~~~~~<~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~>~~| ~~~~~~(~~~ )~~~~~~~~~ ~~~~~~~|~~ 9961 ~~~(~~~~~~ ~~~)~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10021 ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~~~ 10141 ~~~~~~~~~~ ~~~~~~~~~~ ~)~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10201 ~~~~~~~~~~ ~|~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10321 ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ||||| // LOCUS mt.L.bic.2 10775 bp RNA RNA 21-JUL-1998 DEFINITION Mitochondrion Laccaria bicolor.; . ACCESSION AF006485 KEYWORDS . SOURCE Mitochondrion Laccaria bicolor. ORGANISM Mitochondrion Laccaria bicolor. REFERENCE 1 (bases 1 to 533) AUTHORS Selosse,M.A., Martin,F. and Le Tacon,F. TITLE plantations Does introduced mitochondrial genome persist independantly of co-introduced nuclear genomes? The case of the ectomycorrhizal basidiomycete Laccaria bicolor in forest JOURNAL Symbiosis (1997) In press STANDARD No information REFERENCE 2 (bases 1 to 1839) AUTHORS Selosse,M.A., Martin,F. and Le Tacon,F. TITLE Survival of an introduced ectomycorrhizal Laccaria bicolor strain in an European forest plantation confirmed by mitochondrial analysis JOURNAL New Phytol. (1998) In press STANDARD No information REFERENCE 3 (bases 1 to 533) AUTHORS Selosse,M.A., Martin,F. and Le Tacon,F. TITLE Direct Submission JOURNAL Submitted (02-JUN-1997) Forest Microbiology, INRA, Centre de Recherche de Nancy, Champenoux, 54 54280, France STANDARD No information REFERENCE 4 (bases 1 to 1839) AUTHORS Selosse,M.A., Martin,F. and Le Tacon,F. TITLE Direct Submission JOURNAL Submitted (21-JUL-1998) Forest Microbiology, INRA, Centre de Recherche de Nancy, Champenoux, 54 54280, France STANDARD No information COMMENTS Sequence information (bases 1 to 10775) Corresponding GenBank entry: AF006485 BASE COUNT 662 a 267 c 345 g 565 t 8936 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 |~~~~~~~~| ~~~~~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~~(~~~~ 361 ~~~~~~~~~) ~|~~~~~~~~ ~~~~~~~|~~ ~~~~~~~(~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~)~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~(~~~~ 481 )~~~|~~~~~ ~~(~~~~~)~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~~~)~ 541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~<~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~>~ ~~~~~~~~~~ |~~~~~~~~~ 841 ~~~(~~~~)~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~(~~~ ~~)~~~~~~~ |~~~~~~~~~ ~~~~~~~(~~ ~~~~)~~~~~ ~~~~~~~~~~ 961 ~~~~~~~<~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~>~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~< ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~> (~~~~~~)~~ ~~~~~~~~~~ ~~~|~(~~~) 1321 ~~~~~~~(~~ ~~~~~)~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~<~~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ >~~~~~~~~~ ~~~~~~(~~~ ~~~~~~~~~~ 1561 ~~~~~~~)~~ ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~~~~) ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~( ~~~~~~)~~~ ~~~~~~~~~~ 1681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~<~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~>~~~~ ~~~~~~~~~~ ~~~~~~~~<~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~> (~~~~~~~~~ 2041 ~~)~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~~~)~~~~ |~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~(~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~)~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~(~~~~~ )~~~~~<~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~>~~~~ ~~(~~~~~~) ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2761 ~(~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~) ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~~~~~~( ~~~~~~~~~) ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~(~~~~~~) ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 (~uuga)ugu cu-ac----- ----<----- ---------- ---------- ---------- 3001 ---------- ---------- ---------- -aaauaauau aaaaaca>ga AAU|-UUAUG 3061 G|AGGUAC|A GCAaggc-aa uu-ccc---- ---------- ---------< aacaaauuua 3121 aggu-----a aaacaaaaau ucuuuucuug uuuuauauuu uuauuauuau uuuuauaaua 3181 auaaaaauuc uauuuauaag auaaaauaau uuauauuaaa uuaacagaca caauaaguag 3241 ccuuaucugc guucagguug cggggaucua gaaaaucuua ccuu>----- --------ug 3301 gaa---g-cg aauCUCGG-- AAUU|-ACAU -A-A---AUU ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- -gau--GG-U -AGAU-AUUC AGACU--GC- UC-AU(-GCU 3481 AAG)UUGGGC AG-UC----A AGACGG(AAA -CAG)CCG-A GAACA-C-UG -AU-CAA--- 3541 --GGU-CCCA -AAU-GA-U- UGUUAAGUG- --------AA AUUAAGGAC- GUAGCAAUAU 3601 cga------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- AUACA-GCUG U<-------- ---------- ---------- 3721 ---------- ---------- ---------- ---------- -->GAAGU-G AGC(CUGGCA 3781 GU-C)-GCUA --CUU|A(U- AA)U|GAUCG U(auguaaca )AC|-GCAU- CAGCAGuag-au-a -gu-aGC|-G CCGAAAAU-- ---------- ---------- ----UUAACG 3961 GGUCU----- ---------- ---------- ---------- ---------- ---------- 4021 ---------- ---uAAACAA UCA------- ---------- ---------- ---------- 4081 -------|AC CGAU--AUC| G--U-GU|U- gguuaauaau aa-------- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- ---------- ---------- ---------- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- --------(u 4441 aaau--)uug uuauuaauCU -A-----GGU AGUAG-AA|- CA-UUCAGUA aaacuuuaaa 4501 u--------- caaau-agug (uuu----)< ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ------->ca uua--uuuug u|agga---| UACUGAAGAG AGAAUGC-UG 4681 AC|AUGAGUA -ACGU-AAAa aga-ag-u-- (uauaau--- ---------- ---------- 4741 ---------- -----)---a cuucu-|CGC C-GAAU-ACG AAA--GGGUu -|gcaaauag 4801 g-aaa---gg <--------- --->(--uua au)c-c|-gu uuuguu---- ---------- 4861 ---uuaaug- -CGGCCUCUA A-G-g-g--- auguagc(-u aaa------- ------)<-- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 >-gcua---- cu---a-cuG AU-GAGuc-- ----(----- ---------- ---------- 5041 ---------- ---------- ----)----- |-----|--- ---------- |--<------ 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ---------- ---------- 5221 ---------- ---------- ---------- ---------- ---------- ---------- 5281 ---------- ---------- ---------- ---------- ---------- ---------- 5341 ---------- ---------- ---------- ---------- ---------- ---------- 5401 ---------- ---------- ------->-- ---------- ---------- ---------- 5461 -----(---- ------)--- ---|------ --------|- ---------- -(-----)-- 5521 |--------- ---------- ---------- -----(---- )--------- ---------- 5581 --<------- ---------- ---------- ---------- ---------- ---------- 5641 ---------- ---------- ------->-- ---------- ---------- ------ ---------- ---------- -ACCGUA|CC 6481 C--UAAACC- -(GACACA)G G|UUCGU-AG GUA-(GAG-A A-----)-UA CUAAGGCG-| 6541 |--UAGAG-C U--AAAAGUU -GUUA-AGGA ACUCGGCAAG AUCUCC-UCC UAAG(UUUGA 6601 )CGACAA-GA GGG|------ ---------- -----(---- ---)------ ---------- 6781 ----|G(ACA )C--AAAAUC GGAGGCCA|C GA---CUG-U UU(ACUAA)A AA-CACA-AC 6841 ACAGUG|CA- -AUCAU---- ---------- (--UAAU--- ------)--- ---------- 6901 AUGAUAGUA- UAC-UGUGUG AAAUUU<--- ---------- ---------- ---------- 6961 ---------- ---------- -------->G CC-CG-AU|G CCAUUA-AUA UAAGAG-CGa 7021 --UCAUGG-- --(------- ---------- ---------- ---------- ---------- 7081 ---------- ---------- ---------u uuu)----CU GUGA-uUAAU C-GAAAAU-| 7141 CU-GGUU-AA U-|AG-C|-G -GUCUU-(AA CUAUG)AGGA UC|C(UAA)- GG-UAGCAAA 7201 AUA-AA-U-U |GGCCUU(-U AAAU-)GAGG UC|CG-GUAU CAAUAAUGUA A-CGAUGGUC 7261 UC-------- ---------- -------ACU GUCUCUACAA CUUG-CU-CA ----GUGAAA 7321 UU|G|AAUUA CG-CG(U-GC AGAUG)CGCG UUG----CCU UCAGGGGGAC GGGAAG-ACC 7381 CUAUGC-|-A GCUUC-UACU GU|--A-GUU AGU--UAUC| auaaa- ucuagaacaa -ucaaaauu- aau---AGUG 7501 AAUAGGUAA- -GUC------ ---------- --<------- ---------- ---------- 7561 ---------- ---------- ---------- ---------- ---------- ---------- 7621 ---------- ---------- ---------> --(----gau a)-------- -------gac 7681 aaauagugga aaccuua|aa ----auucu- g-a-u-uggg uuua-uguuu acc--uu-aa 7741 auuu-(--aa uaaa)-aaa- ---------- ---------- ---------- ---a--gg<- 7801 ---------- ---------- ---------- ---------- ---------- ---------- 7861 ---------- ---------- ---------- ---------- ---------- ---------- 7921 ---------- ---------- ---------- ---------- ---------- ---------- 7981 ---------- ---------- ---------- ---------- ---------- ---------- 8041 ---------- ---------- ---------- ---------- ---------- ---------- 8101 ---------- ---------- ----->GAUA GUUUA-C-UA -AUU-GG-CA GUUUGACUG( 8161 GGG)CG-GU- C|GUCUUU(- --------AA UAGAGUAGC- )AAAGUAC|A |U|CCaa-|< 8221 auauuucauu uaaaacuaaa aauuuauugu uuuauaaauu uuauuacaaa aaac-----u 8281 uuauuuuagu auaauuuaaa guaauaauua auuuuaauua auuaacauuc uaaauuuuuc 8341 uuucuaauca uuaauuuuau a--------- ---------- ---------- ->A-GG-UAU 8401 AGC|--UA-- ------<--- gaaauuga(a uggaga)uca au-------- -------caa 8461 cc(aguga-a g)gguugcgc a--------- ---------- ---------- ---------- 8521 ---------- ---------- ---------- ---------- ---------- ---------- 8581 ---------- ---------- ---------- ---------- ---------- ---------- 8641 ---------- ---------> (--------- )--------- ---------- ---------- 8701 ---------- ---------- ---------- -----GA|GU (U|CAAUG)G CGAUAAG-CA 8761 U-GC-UUAAC UGAAA-GAC( -cuaaaa--- )GUCGC-ACA G--------- ---------- 8821 ---------- --------AU AC-------- ---(GUAA-- -)-------- ----GUA-GG 8881 G|---CAUAG UGACC-CCUC GC-U------ ---------- AUA(------ ---------- 8941 ---------- ---------- ---------- ---------- ----AUAUGG GA)UA|GACG 9001 GGGAUCAAU- |UGAUAAAAG UUACGC|UAG G|GAUAA~~~ |~~~~~~~~~ ~~~~~~~~~~ 9061 ~~(~~~~~~~ )~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~|~~~~~ ~|~|~~~~~| 9121 ~~~~~~~~~~ ~~~~~(~~~~ ~~~)~~~~~~ ~~~~~~~~|~ ~~~~(~~~~~ )~~~~~~~~~ 9181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~|~~~~(~~ ~~)~~~~~~~ ~~~~~~~~~~ 9241 ~~|~~~~~~~ ~~|~|<~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9301 >~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~~ ~~(~~~~~)~ ~~~~~)~~~~ 9361 ~~~~~~<~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~>~ ~~~~~~~~~~ ~~~~~~~~~~ 9421 ~|~~~~~~~~ (~~~~~)<~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~> 9541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9601 ~~~~~~~~~~ ~~~~~~~~~~ (~~~~~~~~~ ~~~~~)~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9661 ~~~~~~~~~~ ~~~~~~~<~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~>~~| ~~~~~~(~~~ )~~~~~~~~~ ~~~~~~~|~~ 9961 ~~~(~~~~~~ ~~~)~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10021 ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~~~ 10141 ~~~~~~~~~~ ~~~~~~~~~~ ~)~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10201 ~~~~~~~~~~ ~|~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10321 ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ||||| // LOCUS mt.A.macro 10775 bp RNA RNA 27-MAR-1996 DEFINITION Mitochondria Allomyces macrogynus; . ACCESSION U41288 KEYWORDS . SOURCE Mitochondria Allomyces macrogynus. ORGANISM Mitochondria Allomyces macrogynus. REFERENCE 1 (bases 20975 to 22690) AUTHORS Paquin,B., Laforest,M.J. and Lang,B.F. TITLE Interspecific transfer of mitochondrial genes in fungi and JOURNAL Proc. Natl. Acad. Sci. U.S.A. 91 (25), 11807-11810 (1994) STANDARD No information REFERENCE 2 (bases 15012 to 19727) AUTHORS Paquin,B., Roewer,I., Wang,Z. and Lang,B.F. TITLE A robust fungal phylogeny using the mitochondrially encoded nad5 protein sequence JOURNAL Can. J. Bot. 73, S180-S185 (1995) STANDARD No information REFERENCE 3 (bases 20975 to 22690) AUTHORS Paquin,B., O'Kelly,C.J. and Lang,B.F. TITLE Intron-encoded open reading frame of the GIY-YIG subclass in a plastid gene JOURNAL Curr. Genet. 28 (1), 97-99 (1995) STANDARD No information REFERENCE 4 (bases 30388 to 40110) AUTHORS Paquin,B., Forget,L., Roewer,I. and Lang,B.F. TITLE Molecular phylogeny of Allomyces macrogynus: congruency between nuclear ribosomal RNA- and mitochondrial protein-based trees JOURNAL J. Mol. Evol. 41 (5), 657-665 (1995) STANDARD No information REFERENCE 5 (bases 1 to 57473) AUTHORS Paquin,B. and Lang,B.F. TITLE The mitochondrial DNA of Allomyces macrogynus: the complete genomic sequence from an ancestral fungus JOURNAL J. Mol. Biol. 255 (5), 688-701 (1996) STANDARD No information REFERENCE 6 (bases 1 to 57473) AUTHORS Paquin,B., Laforest,M-J. and Lang,B.F. TITLE 80 conserved, palindromic sequence elements in the mitochondrial DNA of Allomyces sp.: Evidence for mobility JOURNAL Unpublished STANDARD No information REFERENCE 7 (bases 1 to 57473) AUTHORS Lang,B.F. TITLE Direct Submission JOURNAL Submitted (24-NOV-1995) Franz Lang, Departement de Biochimie, Universite de Montreal, 2900 Edouard-Montpetit, Montreal, Quebec H3T 1J4, Canada STANDARD No information COMMENTS Sequence information (bases 1 to 10775) Corresponding GenBank entry: U41288 Allomyces macrogynus (chytridiomycete) mitochondrial LSU rRNA B. Paquin & B.F. Lang, J. Mol. Biol., in press Gray January 1996 NCBI gi: 1236403 BASE COUNT 1017 a 542 c 754 g 849 t 7613 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ aacauacc-a agga------ ---------- ---------- ---------- 241 ---------- ---------- ---------- ----gUAAAG GACUAAUUG- ----AGGAUG 301 |ACU--AGU| CAU-UCUA-U A|au------ ---------- -----UGGA| -agca(-cga 361 auga-----) g|gcu-aaa- aGAAUGA|u- --agu----- ---------- ---------- 421 ---------- ---au----g UUGUUCG-AU UCCAA-A-GG U--------- -----(GAAA 481 )ACC|----- ---------- ---------- aaaga----- ---------- (cggag-aau 541 )--------- -----ucuu- ---<----au ggaguccugu cuauuu---- ---------- 601 ---------- ---------- ---------- ---------- ---------- ---------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 ---------- ---------- ---------- ---------- ---------- ---------- 781 ---------- ---------- ---------- -------->- --uuauUAAC |CCUGUGAAU 841 UGA(AACA)U CUUAGUA--- -ACAGG---- ---------- ---------- ---AGGAAAA 901 GAAAUC(-AA CC)GA-G-AU |UUUaACGA- -GUAG-U(-G GCGA)GCGAA -AGUAAAug- 961 -AAaaca<-- ---------- ---------- ---------- ---------- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------u 1081 ucauguuuug auccgaaaua ucuuaucgau guuucgauuu uuucaaagac cccguaccgg 1141 gucuuggggc augucugaaa uugaacauca cacacuuacc caugauaaag gagaugguuu 1201 ggaucuucga uucuaccauu uucaggcagu g--uguuua< u--------- ---------- 1261 ---------- ---------- ---------> (ggaa--)ug ggug------ GC-|C(AAA) 1321 G--AAGG(UG AAAGU)CCUg ua--aauuuc aguaguagac cacuuaugg- ---------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- ----AGUAGA ACGA--(--- ---------- 1561 ----auu)-- UUGUUCAGAA ---gaaAGGG G(UACCA-U) -CCUCUAaua aaUUA-AAUA 1621 ---UGAUAGA A-UGAACGAU AGUG-AA--- --GAGUACC( -GUGA-)GGG ---AAA-GU- 1681 UG-------- ----aaaagu a------ccu cu-------- ---------- aaga------ 1741 GAACGAAGCC U(-uccg--) AGGCuucgaa uaucaaugcc ggagg-GGUG AA--AUAGA- 1801 UCCUG-AAUC AGUUaAGU-C U-<------- ---------- ---------- ---------- 1861 ----->AAAA GCAGUUUGAG CCA-----<- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------> (---agauua 2041 --)-----UG GUGAAGAC-G UACCUU(UU- GCAUA)AUGG |GUC-AGCAA GU-----UA- 2101 AUUUUUGGAG CAAg-agaac aaaagaacgu auc------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- -------uuu gguacguugg u-gauc-u-a 2521 agu-(-gaaa )--ac-aaaa gaacaaagug agacuuaguc uuaccccuau acauaauuuu 2581 gc-------- ---------- ---------- ---------- ---------- ---------- 2641 ------acuc agugugauug augaucuggg ug-uucu--- gu----gaaG UUCCA-GAAA 2701 UUA-GACCCG AA-ACCAA-G UG-AUCUAUC CAU-GGC-CA GGU------- ---------- 2761 -(-------- ---------- ---------- ---------- ----guaag) ---------- 2821 --ACCGAA-C GG-GUGAUC( GUAGUAA-U) GCUC-UCCGA --UGAGCUU- UGGAUAG-cC 2881 GU(G-AAAU) GCG-AAUC-G A-ACUUGGAA AUAGCU-GGU AUACC--GCG AA-AAC-UAU 2941 (-UGAA)GUA GA-AC-GCUA AACC<----- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ------->-- uac|-AAACG 3061 A|GGGUAC|A GCACUGG--A A--------- --------(g aaaa----)< ---------- 3121 ---------- ---------- ---------- ---------- ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---->----- ---------- 3301 ----UU--CU AAACUGGA-- AAUA|-UCGU -U-G---acu ucauaugagu ccugagaccc 3361 cccuccgggg ggguuuacau uuu------- ---------- ---------- ---------- 3421 ---------- ---------- -uag--GU-U -UAGU-AGUC AGAUU--AU- CU-GU(-GAU 3481 AAG)GUAGUU AA-UC----A AAAGGG(AAA -CAG)CCC-A GACCA-A-AA -GU-UAA--- 3541 --GGU-CUCA -AAU-GA-U- UACUAAGUG- --------aa auuaaCCG-- Aaaacaaag| 3601 cgacaagccc gaaaaaaauc acauagauau auaucuucau guggguagag ggaaaugaug 3661 guuuuacuau caugagucg| AGACA-AUCA C<-------- ---------- ---------- 3721 ---------- ---------- ---------- ---------- -->uUUGU-G GGC(UUGGAA 3781 GC-A)-GCCA -UCAA|U(U- AG)A|GAAAG C(--GUUACA )GC|-UCAA- UGAUCGAUU-UU-G -UU-UCU|-C GGGAAAAU-- ---------- ---------- ----GUAUCG 3961 GGUCAgacuc uuaucggccu caguaaccga auugaaaaga guugggggua uaccuuuggu 4021 ggcucugccc cuuuAAGUAA UCA------- ---------- ---------- ---------- 4081 -------|AC CGAA--ACU| U--U-GG|ca agcaugaugu gagacauggu aacgugacuu 4141 au-------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- ---------- ---------- ---------- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------c auuaugu-uu -g-----GGU AGCGG-UA|- CA-UUCAAUu g--auggagu 4501 g--------a aGGGA-AAAC (gaga---)< ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ------->GU UUU--UCU-G G|aaugg--| AUUUGAAGAG AGAAUGC-UG 4681 AC|AUGAGUA -ACUA-AAA- agg-a----- (aaaaaaa-- ---------- ---------- 4741 ---------- -----)---- -uccuu|CCC C-UAAA-AUU CAA--GGGUA -|----aaaa 4801 a--------- ---------- ----(----- --)---|--- ---------- ---------- 4861 ----uaau-- -CGGUUUCUA A-G-U-C--- gagACA-(-C AAC------- ------)<-- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 >--UGU-g-u uu---G-ACG AU-GAAGAgg aacgaa(--- ---------- ---------- 5041 ---------u cugau----- -)uucguucu |g----|--- ---------- |--------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ---------- ---------- 5221 ---------- ---------- ---------- ---------- ---------- ---------- 5281 ---------- ---------- ---------- ---------- ---------- ---------- 5341 ---------- ---------- ---------- ---------- ---------- ---------- 5401 ---------- ---------- ---------- ---------- ---------- ---------- 5461 ---------- ---------- ---|------ ---------- ---------- ---------- 5521 |--------- ---------- ---------- ---------- ---------- ---------- 5581 --<------- ---------- ---------- ---------- ---------- ---------- 5641 ---------- ---------- ------->-- ---------- ---------- ---<------ 5701 ---------- ---------- ---------- ---------- ---------- ---------- 5761 ---------- ---------- ---------- ---------- ---------- ---------- 5821 ---------- ---------- ---------- ---------- ---------- ---------- 5881 ---------- ---------- ---------- ---------- ---------- ---------- 5941 ---------- ---------- ---------- ---------- ---------- ---------- 6001 ---------- ---------- ---------- ---------- ---------- ---------- 6061 ---------- ---------- ---------- ---------- ---------- ---------- 6121 ---------- ---------- ---------- ---------- ---------- ---------- 6181 ---------- ---------- ---------- ---------- ---------- ---------- 6241 ---------- ---------- ---------- ---------- ---------- ---------- 6301 ---------- ---------- ---------- ---------- ---------- ---------- 6361 ---------- ---------- ---------- ---------- ---------- ---------- 6421 ---------- ---------- ------>--- ---------a uuuaua---- -ACCGUA|CC 6481 -----UUCC- -(AACGCU)G G|AGAAU-GA GCUG(GUA-A A-----)CAG UGAAGGGGA| 6541 |--AUGGG-A G--AACCAUC -UUGA-AGGA ACUAGGCAAA AUGACU-CUG UAAC(UUCG- 6601 )GGAGAA-GG AGG|agaaga augaaaguga c----(--au ug)------- ---------- 6661 ---------- ---------- ---------- ---------- -gucauu[ga aagagaagau 6721 ac(uuc)gua ucuu|gucca aacccc(g-- ---------- --uu)ggggu uucgau]uuc 6781 uucu|-(--a )aa-aaaaUA GAGAGGGG|C AA---CUG-U UU(ACUAA)A AA-CACA-GG 6841 AGUCAG|CA- -ACCCC---- ---------- (--GUAA--- ------)--- ---------- 6901 GGGUUAGUA- UUG-GCUCUG AAGUCU<--- ---------- ---------- ---------- 6961 ---------- ---------- -------->G UC-CG-GU|G CAAGUA-AGU GAAagauga- 7021 --aagaa--- (ag[agauga aggaccccgg ccc(gaa)gg gccgggggac uugauccaaa 7081 aaguccgccc c(uuc)gggg cguuccuuuu u]cga)---u uuuu--uucu cauaacCU-| 7141 CU-UGUA-AA C-|GA-C|-G -GCCUU-(AA CCAUA)AGGG UC|C(UAA)- GG-UAGCGAA 7201 AUU-CC-U-A |GGCUAA(-U AAUU-)GUAG UC|CU-GCAU GAAUGGCGUA A-UGAUCCCU 7261 CU-------- ---------- -------ACU UUCUACAAGA UGGA-CC-CA ----GUGAAA 7321 UU|G|AAUUA UC-CG(U-GC AGAUG)CGGA UUA----CCA UUAGCCAGAC GAGAAG-ACC 7381 CUAUGA-|-A GCUUU--ACU GG|--A-AUU AAA--CUUU| <--------- ---------- 7441 ---------- ---------- --->guuuc- gu-----ugg -ugaacug-- ---------- 7501 ---------- ---------- ---------- ---------- ---------- ---------- 7561 ---------- ---------- ---------- ---------- ---------- ---------- 7621 ---------- ---------- ---------- --------aa u--------- -------gua 7681 aaacuugguc uuuuucu|u- -----cauu- c-a-c-cgau aaua-c---- ---------- 7741 -ggaa(-auu aug-)uucc- ---------- ---------- ---------- ---------- 7801 ---------- ---------- ---------- ---------- ---------- ---------- 7861 ---------- ---------- ---------- ---------- ---------- ---------- 7921 ---------- ---------- ---------- ---------- ---------- ---------- 7981 ---------- ---------- ---------- ---------- ---------- ---------- 8041 ---------- ---------- ---------- ---------- ---------- ---------- 8101 ---------- ---------- --------uu uaAGU-U-UA -AGU-GA-CA GUUUAACUG( 8161 GGG)AG-GU- U|UCCUGC(- --------UA AAUAGUAAC- )GAAG-GA|G |U|ACAA-|< 8221 ---------- ---------- ---------- ---------- ---------- ---------- 8281 ---------- ---------- ---------- ---------- ---------- ---------- 8341 ---------- ---------- ---------- ---------- ---------- ->A-GG-UAU 8401 -AA|--uug- AAGUCA<--- ---------- ---------- ---------- ---------- 8461 ---------- ---------- ---------- ---------- ---------- ---------- 8521 ---------- ---------- ---------- ---------- ---------- ---------- 8581 ---------- ---------- ---------- ---------- ---------- ---------- 8641 ---------- ---------> (cucuguaau )----UGACU UG[aagaaag g(ucauau)c 8701 cuuuc|accc gauu(ccugu )aaucggguu uaa]auu|GU (G|CAAUG)G CAU-AAA-UA 8761 U-GC-UUGAC UGUAA-GAC( -uauuacuc- )GUCGA-ACA G--------- ---------- 8821 ---------- --------GG AG-------- ---(GUAA-- -)-------- ----CUC-GG 8881 U|---CAUAG UGAUC-CCCA AA-U------ ---------- UCU(------ ---------- 8941 ---------- ---------- ---------- ---------- ----UUAUGG AA)AG|GUUU 9001 GGGCUCAAC- |GGAUAAAAG CUACUC|UAG G|GAUAACAG |G-CUG-A-U CAUUCUUUAG 9061 AG(U--UCCU )AUCGACGGA --AUGGUUUG GC-ACCUCGA UGUC|GG--C U|C|AUCGC| 9121 AU-CC-UGGG GG-UG(--AA -GA)AGCUCC CAAG-GGU|U GGAC(UGUUC )GUCCA-UUA 9181 A--AGCGGU- -+ACGUGAGC UGGGUUUAGA AC|GA-U(GU AA)AUCAGUU CGGACUCUAU 9241 CU|ACUAA-U GG|G|<---- ---------- ---------- ---------- ---------- 9301 >AAGAA-GGA AG-UgacAAG AAU-AGA-AU CC--(UAGU- AC(-GCAA)G GAAU-)GGAU 9361 U--GU-<--- ---------- ---------- -------->G UGAACCU-CU AGUGUACCUG 9421 U|-uga---- ------- 9541 ----ucaUCG CAGG--GUAG CCAC-GUUCA UAA------- ---------- -------aaa 9601 ---------- -AUAAGAGUU (GAAAGC--A UCUAA)A-AC -UC-GAAGUU ga-UCUU--- 9661 gaaAC--U-- -UCUUU-<-- ---------- ---------- ---------- ---------- 9721 ---------- ---------- ---------- ---------- ---------- ---------- 9781 ---------- ---------- ---------- ---------- ---------- ---------- 9841 ---------- ---------- ---------- ---------- ---------- ---------- 9901 ---------- ---------- ------>--| ---------- ---------- -aaaaca|CG 9961 CUA(GAGACU A--)UAGCGa ---------- ---------- ---------- ------AAUA 10021 G|GUcauaag ---------- ---------- ---------- ---------- ---------- 10081 ---------- --uaugauaA CCC------- ---------- --------(- ---------- 10141 ---------- -------GAG A)GGGU---- ---------- ---------- ---------- 10201 -----cggcu g|a|augAUA CUAau----- ---------- ---------- -----aguua 10261 uuua------ ---------- ---------- ---------- ---------- ---uccuugg 10321 uauguu--|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ||||| // LOCUS (4)-METAZO 10775 bp RNA RNA 09-JAN-1999 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 10775) Corresponding GenBank entry: DIVIDER BASE COUNT 0 a 0 c 0 g 0 t 10775 others ORIGIN 1 |......... .......... .......... .......... .......... .......... 61 .......... .......... .......... .......... .......... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......... .......... .......... .......... 241 .......... .......... .......... .......... .......... .......... 301 .......... .......... .......... .......... .......... .......... 361 .......... .......... .......... .......... .......... .......... 421 .......... .......... .......... .......... .......... .......... 481 .......... .......... .......... .......... .......... .......... 541 .......... .......... .......... .......... .......... .......... 601 .......... .......... .......... .......... .......... .......... 661 .......... .......... .......... .......... .......... .......... 721 .......... .......... .......... .......... .......... .......... 781 .......... .......... .......... .......... .......... .......... 841 .......... .......... .......... .......... .......... .......... 901 .......... .......... .......... .......... .......... .......... 961 .......... .......... .......... .......... .......... .......... 1021 .......... .......... .......... .......... .......... .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .......... .......... .......... .......... .......... 1201 .......... .......... .......... .......... .......... .......... 1261 .......... .......... .......... .......... .......... .......... 1321 .......... .......... .......... .......... .......... .......... 1381 .......... .......... .......... .......... .......... .......... 1441 .......... .......... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... .......... .......... .......... .......... .......... 1621 .......... .......... .......... .......... .......... .......... 1681 .......... .......... .......... .......... .......... .......... 1741 .......... .......... .......... .......... .......... .......... 1801 .......... .......... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .......... .......... 1921 .......... .......... .......... .......... .......... .......... 1981 .......... .......... .......... .......... .......... .......... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... .......... .......... .......... .......... .......... 2161 .......... .......... .......... .......... .......... .......... 2221 .......... .......... .......... .......... .......... .......... 2281 .......... .......... .......... .......... .......... .......... 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... .......... 2701 .......... .......... .......... .......... .......... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... .......... 2881 .......... .......... .......... .......... .......... .......... 2941 .......... .......... .......... .......... .......... .......... 3001 .......... .......... .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .......... .......... 3181 .......... .......... .......... .......... .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .......... .......... .......... 3361 .......... .......... .......... .......... .......... .......... 3421 .......... .......... .......... .......... .......... .......... 3481 .......... .......... .......... .......... .......... .......... 3541 .......... .......... .......... .......... .......... .......... 3601 .......... .......... .......... .......... .......... .......... 3661 .......... .......... .......... .......... .......... .......... 3721 .......... .......... .......... .......... .......... .......... 3781 .....-.... .......... .......... .......... .......... .......... 3841 .......... .......... .......... .......... .......... .......... 3901 .......... .......... .......... .......... .......... .......... 3961 .......... .......... .......... .......... .......... .......... 4021 .......... .......... .......... .......... .......... .......... 4081 .......... .......... .......... .......... .......... .......... 4141 .......... .......... .......... .......... .......... .......... 4201 .......... .......... .......... .......... .......... .......... 4261 .......... .......... .......... .......... .......... .......... 4321 .......... .......... .......... .......... .......... .......... 4381 .......... .......... .......... .......... .......... .......... 4441 .......... .......... .......... .......... .......... .......... 4501 .......... .......... .......... .......... .......... .......... 4561 .......... .......... .......... .......... .......... .......... 4621 .......... .......... .......... .......... .......... .......... 4681 .......... .......... .......... .......... .......... .......... 4741 .......... .......... .......... .......... .......... .......... 4801 .......... .......... .......... ..)....... .......... .......... 4861 .......... .......... .......... .......... .......... .......... 4921 .......... .......... .......... .......... .......... .......... 4981 .......... .......... .......... .......... .......... .......... 5041 .......... .......... .......... .......... .......... .......... 5101 .......... .......... .......... .......... .......... .......... 5161 .......... .......... .......... .......... .......... .......... 5221 .......... .......... .......... .......... .......... .......... 5281 .......... .......... .......... .......... .......... .......... 5341 .......... .......... .......... .......... .......... .......... 5401 .......... .......... .......... .......... .......... .......... 5461 .......... .......... .......... .......... .......... .......... 5521 .......... .......... .......... .......... .......... .......... 5581 .......... .......... .......... .......... .......... .......... 5641 .......... .......... .......... .......... .......... .......... 5701 .......... .......... .......... .......... .......... .......... 5761 .......... .......... .......... .......... .......... .......... 5821 .......... .......... .......... .......... .......... .......... 5881 .......... .......... .......... .......... .......... .......... 5941 .......... .......... .......... .......... .......... .......... 6001 .......... .......... .......... .......... .......... .......... 6061 .......... .......... .......... .......... .......... .......... 6121 .......... .......... .......... .......... .......... .......... 6181 .......... .......... .......... .......... .......... .......... 6241 .......... .......... .......... .......... .......... .......... 6301 .......... .......... .......... .......... .......... .......... 6361 .......... .......... .......... .......... .......... .......... 6421 .......... .......... .......... .......... .......... .......... 6481 .......... .......... .......... .......... .......... .......... 6541 .......... .......... .......... .......... .......... .......... 6601 .......... .......... .......... .......... .......... .......... 6661 .......... .......... .......... .......... .......... .......... 6721 .......... .......... .......... .......... .......... .......... 6781 .......... .......... .......... .......... .......... .......... 6841 .......... .......... .......... .......... .......... .......... 6901 .......... .......... .......... .......... .......... .......... 6961 .......... .......... .......... .......... .......... .......... 7021 .......... .......... .......... .......... .......... .......... 7081 .......... .......... .......... .......... .......... .......... 7141 .......... .......... .......... .......... .......... .......... 7201 .......... .......... .......... .......... .......... .......... 7261 .......... .......... .......... .......... .......... .......... 7321 .......... .......... .......... .......... .......... .......... 7381 .......... .......... .......... .......... .......... .......... 7441 .......... .......... .......... .......... .......... .......... 7501 .......... .......... .......... .......... .......... .......... 7561 .......... .......... .......... .......... .......... .......... 7621 .......... .......... .......... .......... .......... .......... 7681 .......... .......... .......... .......... .......... .......... 7741 .......... .......... .......... .......... .......... .......... 7801 .......... .......... .......... .......... .......... .......... 7861 .......... .......... .......... .......... .......... .......... 7921 .......... .......... .......... .......... .......... .......... 7981 .......... .......... .......... .......... .......... .......... 8041 .......... .......... .......... .......... .......... .......... 8101 .......... .......... .......... .......... .......... .......... 8161 .......... .......... .......... .......... .......... .......... 8221 .......... .......... .......... .......... .......... .......... 8281 .......... .......... .......... .......... .......... .......... 8341 .......... .......... .......... .......... .......... .......... 8401 .......... .......... .......... .......... .......... .......... 8461 .......... .......... .......... .......... .......... .......... 8521 .......... .......... .......... .......... .......... .......... 8581 .......... .......... .......... .......... .......... .......... 8641 .......... .......... .......... .......... .......... .......... 8701 .......... .......... .......... .......... .......... .......... 8761 .......... .......... .......... .......... .......... .......... 8821 .......... .......... .......... .......... .......... .......... 8881 .......... .......... .......... .......... .......... .......... 8941 .......... .......... .......... .......... .......... .......... 9001 .......... .......... .......... .......... .......... .......... 9061 .......... .......... .......... .......... .......... .......... 9121 .......... .......... .......... .......... .......... .......... 9181 .......... .......... .......... .......... .......... .......... 9241 .......... .......... .......... .......... .......... .......... 9301 .......... .......... .......... .......... .......... .......... 9361 .......... .......... .......... .......... .......... .......... 9421 .......... .......... .......... .......... .......... .......... 9481 .......... .......... .......... .......... .......... .......... 9541 .......... .......... .......... .......... .......... .......... 9601 .......... .......... .......... .......... .......... .......... 9661 .......... .......... .......... .......... .......... .......... 9721 .......... .......... .......... .......... .......... .......... 9781 .......... .......... .......... .......... .......... .......... 9841 .......... .......... .......... .......... .......... .......... 9901 .......... .......... .......... .......... .......... .......... 9961 .......... .......... .......... .......... .......... .......... 10021 .......... .......... .......... .......... .......... .......... 10081 .......... .......... .......... .......... .......... .......... 10141 .......... .......... .......... .......... .......... .......... 10201 .......... .......... .......... .......... .......... .......... 10261 .......... .......... .......... .......... .......... .......... 10321 .......... .......... .......... .......... .......... .......... 10381 .......... .......... .......... .......... .......... .......... 10441 .......... .......... .......... .......... .......... .......... 10501 .......... .......... .......... .......... .......... .......... 10561 .......... .......... .......... .......... .......... .......... 10621 .......... .......... .......... .......... .......... .......... 10681 .......... .......... .......... .......... .......... .......... 10741 .......... .......... .......... ||||| // LOCUS (5)-EUMETA 10775 bp RNA RNA 09-JAN-1999 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 10775) Corresponding GenBank entry: DIVIDER BASE COUNT 0 a 0 c 0 g 0 t 10775 others ORIGIN 1 |......... .......... .......... .......... .......... .......... 61 .......... .......... .......... .......... .......... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......... .......... .......... .......... 241 .......... .......... .......... .......... .......... .......... 301 .......... .......... .......... .......... .......... .......... 361 .......... .......... .......... .......... .......... .......... 421 .......... .......... .......... .......... .......... .......... 481 .......... .......... .......... .......... .......... .......... 541 .......... .......... .......... .......... .......... .......... 601 .......... .......... .......... .......... .......... .......... 661 .......... .......... .......... .......... .......... .......... 721 .......... .......... .......... .......... .......... .......... 781 .......... .......... .......... .......... .......... .......... 841 .......... .......... .......... .......... .......... .......... 901 .......... .......... .......... .......... .......... .......... 961 .......... .......... .......... .......... .......... .......... 1021 .......... .......... .......... .......... .......... .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .......... .......... .......... .......... .......... 1201 .......... .......... .......... .......... .......... .......... 1261 .......... .......... .......... .......... .......... .......... 1321 .......... .......... .......... .......... .......... .......... 1381 .......... .......... .......... .......... .......... .......... 1441 .......... .......... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... .......... .......... .......... .......... .......... 1621 .......... .......... .......... .......... .......... .......... 1681 .......... .......... .......... .......... .......... .......... 1741 .......... .......... .......... .......... .......... .......... 1801 .......... .......... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .......... .......... 1921 .......... .......... .......... .......... .......... .......... 1981 .......... .......... .......... .......... .......... .......... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... .......... .......... .......... .......... .......... 2161 .......... .......... .......... .......... .......... .......... 2221 .......... .......... .......... .......... .......... .......... 2281 .......... .......... .......... .......... .......... .......... 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... .......... 2701 .......... .......... .......... .......... .......... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... .......... 2881 .......... .......... .......... .......... .......... .......... 2941 .......... .......... .......... .......... .......... .......... 3001 .......... .......... .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .......... .......... 3181 .......... .......... .......... .......... .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .......... .......... .......... 3361 .......... .......... .......... .......... .......... .......... 3421 .......... .......... .......... .......... .......... .......... 3481 .......... .......... .......... .......... .......... .......... 3541 .......... .......... .......... .......... .......... .......... 3601 .......... .......... .......... .......... .......... .......... 3661 .......... .......... .......... .......... .......... .......... 3721 .......... .......... .......... .......... .......... .......... 3781 .....-.... .......... .......... .......... .......... .......... 3841 .......... .......... .......... .......... .......... .......... 3901 .......... .......... .......... .......... .......... .......... 3961 .......... .......... .......... .......... .......... .......... 4021 .......... .......... .......... .......... .......... .......... 4081 .......... .......... .......... .......... .......... .......... 4141 .......... .......... .......... .......... .......... .......... 4201 .......... .......... .......... .......... .......... .......... 4261 .......... .......... .......... .......... .......... .......... 4321 .......... .......... .......... .......... .......... .......... 4381 .......... .......... .......... .......... .......... .......... 4441 .......... .......... .......... .......... .......... .......... 4501 .......... .......... .......... .......... .......... .......... 4561 .......... .......... .......... .......... .......... .......... 4621 .......... .......... .......... .......... .......... .......... 4681 .......... .......... .......... .......... .......... .......... 4741 .......... .......... .......... .......... .......... .......... 4801 .......... .......... .......... ..)....... .......... .......... 4861 .......... .......... .......... .......... .......... .......... 4921 .......... .......... .......... .......... .......... .......... 4981 .......... .......... .......... .......... .......... .......... 5041 .......... .......... .......... .......... .......... .......... 5101 .......... .......... .......... .......... .......... .......... 5161 .......... .......... .......... .......... .......... .......... 5221 .......... .......... .......... .......... .......... .......... 5281 .......... .......... .......... .......... .......... .......... 5341 .......... .......... .......... .......... .......... .......... 5401 .......... .......... .......... .......... .......... .......... 5461 .......... .......... .......... .......... .......... .......... 5521 .......... .......... .......... .......... .......... .......... 5581 .......... .......... .......... .......... .......... .......... 5641 .......... .......... .......... .......... .......... .......... 5701 .......... .......... .......... .......... .......... .......... 5761 .......... .......... .......... .......... .......... .......... 5821 .......... .......... .......... .......... .......... .......... 5881 .......... .......... .......... .......... .......... .......... 5941 .......... .......... .......... .......... .......... .......... 6001 .......... .......... .......... .......... .......... .......... 6061 .......... .......... .......... .......... .......... .......... 6121 .......... .......... .......... .......... .......... .......... 6181 .......... .......... .......... .......... .......... .......... 6241 .......... .......... .......... .......... .......... .......... 6301 .......... .......... .......... .......... .......... .......... 6361 .......... .......... .......... .......... .......... .......... 6421 .......... .......... .......... .......... .......... .......... 6481 .......... .......... .......... .......... .......... .......... 6541 .......... .......... .......... .......... .......... .......... 6601 .......... .......... .......... .......... .......... .......... 6661 .......... .......... .......... .......... .......... .......... 6721 .......... .......... .......... .......... .......... .......... 6781 .......... .......... .......... .......... .......... .......... 6841 .......... .......... .......... .......... .......... .......... 6901 .......... .......... .......... .......... .......... .......... 6961 .......... .......... .......... .......... .......... .......... 7021 .......... .......... .......... .......... .......... .......... 7081 .......... .......... .......... .......... .......... .......... 7141 .......... .......... .......... .......... .......... .......... 7201 .......... .......... .......... .......... .......... .......... 7261 .......... .......... .......... .......... .......... .......... 7321 .......... .......... .......... .......... .......... .......... 7381 .......... .......... .......... .......... .......... .......... 7441 .......... .......... .......... .......... .......... .......... 7501 .......... .......... .......... .......... .......... .......... 7561 .......... .......... .......... .......... .......... .......... 7621 .......... .......... .......... .......... .......... .......... 7681 .......... .......... .......... .......... .......... .......... 7741 .......... .......... .......... .......... .......... .......... 7801 .......... .......... .......... .......... .......... .......... 7861 .......... .......... .......... .......... .......... .......... 7921 .......... .......... .......... .......... .......... .......... 7981 .......... .......... .......... .......... .......... .......... 8041 .......... .......... .......... .......... .......... .......... 8101 .......... .......... .......... .......... .......... .......... 8161 .......... .......... .......... .......... .......... .......... 8221 .......... .......... .......... .......... .......... .......... 8281 .......... .......... .......... .......... .......... .......... 8341 .......... .......... .......... .......... .......... .......... 8401 .......... .......... .......... .......... .......... .......... 8461 .......... .......... .......... .......... .......... .......... 8521 .......... .......... .......... .......... .......... .......... 8581 .......... .......... .......... .......... .......... .......... 8641 .......... .......... .......... .......... .......... .......... 8701 .......... .......... .......... .......... .......... .......... 8761 .......... .......... .......... .......... .......... .......... 8821 .......... .......... .......... .......... .......... .......... 8881 .......... .......... .......... .......... .......... .......... 8941 .......... .......... .......... .......... .......... .......... 9001 .......... .......... .......... .......... .......... .......... 9061 .......... .......... .......... .......... .......... .......... 9121 .......... .......... .......... .......... .......... .......... 9181 .......... .......... .......... .......... .......... .......... 9241 .......... .......... .......... .......... .......... .......... 9301 .......... .......... .......... .......... .......... .......... 9361 .......... .......... .......... .......... .......... .......... 9421 .......... .......... .......... .......... .......... .......... 9481 .......... .......... .......... .......... .......... .......... 9541 .......... .......... .......... .......... .......... .......... 9601 .......... .......... .......... .......... .......... .......... 9661 .......... .......... .......... .......... .......... .......... 9721 .......... .......... .......... .......... .......... .......... 9781 .......... .......... .......... .......... .......... .......... 9841 .......... .......... .......... .......... .......... .......... 9901 .......... .......... .......... .......... .......... .......... 9961 .......... .......... .......... .......... .......... .......... 10021 .......... .......... .......... .......... .......... .......... 10081 .......... .......... .......... .......... .......... .......... 10141 .......... .......... .......... .......... .......... .......... 10201 .......... .......... .......... .......... .......... .......... 10261 .......... .......... .......... .......... .......... .......... 10321 .......... .......... .......... .......... .......... .......... 10381 .......... .......... .......... .......... .......... .......... 10441 .......... .......... .......... .......... .......... .......... 10501 .......... .......... .......... .......... .......... .......... 10561 .......... .......... .......... .......... .......... .......... 10621 .......... .......... .......... .......... .......... .......... 10681 .......... .......... .......... .......... .......... .......... 10741 .......... .......... .......... ||||| // LOCUS (6)-BILATE 10775 bp RNA RNA 09-JAN-1999 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 10775) Corresponding GenBank entry: DIVIDER BASE COUNT 0 a 0 c 0 g 0 t 10775 others ORIGIN 1 |......... .......... .......... .......... .......... .......... 61 .......... .......... .......... .......... .......... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......... .......... .......... .......... 241 .......... .......... .......... .......... .......... .......... 301 .......... .......... .......... .......... .......... .......... 361 .......... .......... .......... .......... .......... .......... 421 .......... .......... .......... .......... .......... .......... 481 .......... .......... .......... .......... .......... .......... 541 .......... .......... .......... .......... .......... .......... 601 .......... .......... .......... .......... .......... .......... 661 .......... .......... .......... .......... .......... .......... 721 .......... .......... .......... .......... .......... .......... 781 .......... .......... .......... .......... .......... .......... 841 .......... .......... .......... .......... .......... .......... 901 .......... .......... .......... .......... .......... .......... 961 .......... .......... .......... .......... .......... .......... 1021 .......... .......... .......... .......... .......... .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .......... .......... .......... .......... .......... 1201 .......... .......... .......... .......... .......... .......... 1261 .......... .......... .......... .......... .......... .......... 1321 .......... .......... .......... .......... .......... .......... 1381 .......... .......... .......... .......... .......... .......... 1441 .......... .......... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... .......... .......... .......... .......... .......... 1621 .......... .......... .......... .......... .......... .......... 1681 .......... .......... .......... .......... .......... .......... 1741 .......... .......... .......... .......... .......... .......... 1801 .......... .......... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .......... .......... 1921 .......... .......... .......... .......... .......... .......... 1981 .......... .......... .......... .......... .......... .......... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... .......... .......... .......... .......... .......... 2161 .......... .......... .......... .......... .......... .......... 2221 .......... .......... .......... .......... .......... .......... 2281 .......... .......... .......... .......... .......... .......... 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... .......... 2701 .......... .......... .......... .......... .......... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... .......... 2881 .......... .......... .......... .......... .......... .......... 2941 .......... .......... .......... .......... .......... .......... 3001 .......... .......... .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .......... .......... 3181 .......... .......... .......... .......... .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .......... .......... .......... 3361 .......... .......... .......... .......... .......... .......... 3421 .......... .......... .......... .......... .......... .......... 3481 .......... .......... .......... .......... .......... .......... 3541 .......... .......... .......... .......... .......... .......... 3601 .......... .......... .......... .......... .......... .......... 3661 .......... .......... .......... .......... .......... .......... 3721 .......... .......... .......... .......... .......... .......... 3781 .....-.... .......... .......... .......... .......... .......... 3841 .......... .......... .......... .......... .......... .......... 3901 .......... .......... .......... .......... .......... .......... 3961 .......... .......... .......... .......... .......... .......... 4021 .......... .......... .......... .......... .......... .......... 4081 .......... .......... .......... .......... .......... .......... 4141 .......... .......... .......... .......... .......... .......... 4201 .......... .......... .......... .......... .......... .......... 4261 .......... .......... .......... .......... .......... .......... 4321 .......... .......... .......... .......... .......... .......... 4381 .......... .......... .......... .......... .......... .......... 4441 .......... .......... .......... .......... .......... .......... 4501 .......... .......... .......... .......... .......... .......... 4561 .......... .......... .......... .......... .......... .......... 4621 .......... .......... .......... .......... .......... .......... 4681 .......... .......... .......... .......... .......... .......... 4741 .......... .......... .......... .......... .......... .......... 4801 .......... .......... .......... ..)....... .......... .......... 4861 .......... .......... .......... .......... .......... .......... 4921 .......... .......... .......... .......... .......... .......... 4981 .......... .......... .......... .......... .......... .......... 5041 .......... .......... .......... .......... .......... .......... 5101 .......... .......... .......... .......... .......... .......... 5161 .......... .......... .......... .......... .......... .......... 5221 .......... .......... .......... .......... .......... .......... 5281 .......... .......... .......... .......... .......... .......... 5341 .......... .......... .......... .......... .......... .......... 5401 .......... .......... .......... .......... .......... .......... 5461 .......... .......... .......... .......... .......... .......... 5521 .......... .......... .......... .......... .......... .......... 5581 .......... .......... .......... .......... .......... .......... 5641 .......... .......... .......... .......... .......... .......... 5701 .......... .......... .......... .......... .......... .......... 5761 .......... .......... .......... .......... .......... .......... 5821 .......... .......... .......... .......... .......... .......... 5881 .......... .......... .......... .......... .......... .......... 5941 .......... .......... .......... .......... .......... .......... 6001 .......... .......... .......... .......... .......... .......... 6061 .......... .......... .......... .......... .......... .......... 6121 .......... .......... .......... .......... .......... .......... 6181 .......... .......... .......... .......... .......... .......... 6241 .......... .......... .......... .......... .......... .......... 6301 .......... .......... .......... .......... .......... .......... 6361 .......... .......... .......... .......... .......... .......... 6421 .......... .......... .......... .......... .......... .......... 6481 .......... .......... .......... .......... .......... .......... 6541 .......... .......... .......... .......... .......... .......... 6601 .......... .......... .......... .......... .......... .......... 6661 .......... .......... .......... .......... .......... .......... 6721 .......... .......... .......... .......... .......... .......... 6781 .......... .......... .......... .......... .......... .......... 6841 .......... .......... .......... .......... .......... .......... 6901 .......... .......... .......... .......... .......... .......... 6961 .......... .......... .......... .......... .......... .......... 7021 .......... .......... .......... .......... .......... .......... 7081 .......... .......... .......... .......... .......... .......... 7141 .......... .......... .......... .......... .......... .......... 7201 .......... .......... .......... .......... .......... .......... 7261 .......... .......... .......... .......... .......... .......... 7321 .......... .......... .......... .......... .......... .......... 7381 .......... .......... .......... .......... .......... .......... 7441 .......... .......... .......... .......... .......... .......... 7501 .......... .......... .......... .......... .......... .......... 7561 .......... .......... .......... .......... .......... .......... 7621 .......... .......... .......... .......... .......... .......... 7681 .......... .......... .......... .......... .......... .......... 7741 .......... .......... .......... .......... .......... .......... 7801 .......... .......... .......... .......... .......... .......... 7861 .......... .......... .......... .......... .......... .......... 7921 .......... .......... .......... .......... .......... .......... 7981 .......... .......... .......... .......... .......... .......... 8041 .......... .......... .......... .......... .......... .......... 8101 .......... .......... .......... .......... .......... .......... 8161 .......... .......... .......... .......... .......... .......... 8221 .......... .......... .......... .......... .......... .......... 8281 .......... .......... .......... .......... .......... .......... 8341 .......... .......... .......... .......... .......... .......... 8401 .......... .......... .......... .......... .......... .......... 8461 .......... .......... .......... .......... .......... .......... 8521 .......... .......... .......... .......... .......... .......... 8581 .......... .......... .......... .......... .......... .......... 8641 .......... .......... .......... .......... .......... .......... 8701 .......... .......... .......... .......... .......... .......... 8761 .......... .......... .......... .......... .......... .......... 8821 .......... .......... .......... .......... .......... .......... 8881 .......... .......... .......... .......... .......... .......... 8941 .......... .......... .......... .......... .......... .......... 9001 .......... .......... .......... .......... .......... .......... 9061 .......... .......... .......... .......... .......... .......... 9121 .......... .......... .......... .......... .......... .......... 9181 .......... .......... .......... .......... .......... .......... 9241 .......... .......... .......... .......... .......... .......... 9301 .......... .......... .......... .......... .......... .......... 9361 .......... .......... .......... .......... .......... .......... 9421 .......... .......... .......... .......... .......... .......... 9481 .......... .......... .......... .......... .......... .......... 9541 .......... .......... .......... .......... .......... .......... 9601 .......... .......... .......... .......... .......... .......... 9661 .......... .......... .......... .......... .......... .......... 9721 .......... .......... .......... .......... .......... .......... 9781 .......... .......... .......... .......... .......... .......... 9841 .......... .......... .......... .......... .......... .......... 9901 .......... .......... .......... .......... .......... .......... 9961 .......... .......... .......... .......... .......... .......... 10021 .......... .......... .......... .......... .......... .......... 10081 .......... .......... .......... .......... .......... .......... 10141 .......... .......... .......... .......... .......... .......... 10201 .......... .......... .......... .......... .......... .......... 10261 .......... .......... .......... .......... .......... .......... 10321 .......... .......... .......... .......... .......... .......... 10381 .......... .......... .......... .......... .......... .......... 10441 .......... .......... .......... .......... .......... .......... 10501 .......... .......... .......... .......... .......... .......... 10561 .......... .......... .......... .......... .......... .......... 10621 .......... .......... .......... .......... .......... .......... 10681 .......... .......... .......... .......... .......... .......... 10741 .......... .......... .......... ||||| // LOCUS (7)-COELOM 10775 bp RNA RNA 09-JAN-1999 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 10775) Corresponding GenBank entry: DIVIDER BASE COUNT 0 a 0 c 0 g 0 t 10775 others ORIGIN 1 |......... .......... .......... .......... .......... .......... 61 .......... .......... .......... .......... .......... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......... .......... .......... .......... 241 .......... .......... .......... .......... .......... .......... 301 .......... .......... .......... .......... .......... .......... 361 .......... .......... .......... .......... .......... .......... 421 .......... .......... .......... .......... .......... .......... 481 .......... .......... .......... .......... .......... .......... 541 .......... .......... .......... .......... .......... .......... 601 .......... .......... .......... .......... .......... .......... 661 .......... .......... .......... .......... .......... .......... 721 .......... .......... .......... .......... .......... .......... 781 .......... .......... .......... .......... .......... .......... 841 .......... .......... .......... .......... .......... .......... 901 .......... .......... .......... .......... .......... .......... 961 .......... .......... .......... .......... .......... .......... 1021 .......... .......... .......... .......... .......... .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .......... .......... .......... .......... .......... 1201 .......... .......... .......... .......... .......... .......... 1261 .......... .......... .......... .......... .......... .......... 1321 .......... .......... .......... .......... .......... .......... 1381 .......... .......... .......... .......... .......... .......... 1441 .......... .......... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... .......... .......... .......... .......... .......... 1621 .......... .......... .......... .......... .......... .......... 1681 .......... .......... .......... .......... .......... .......... 1741 .......... .......... .......... .......... .......... .......... 1801 .......... .......... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .......... .......... 1921 .......... .......... .......... .......... .......... .......... 1981 .......... .......... .......... .......... .......... .......... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... .......... .......... .......... .......... .......... 2161 .......... .......... .......... .......... .......... .......... 2221 .......... .......... .......... .......... .......... .......... 2281 .......... .......... .......... .......... .......... .......... 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... .......... 2701 .......... .......... .......... .......... .......... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... .......... 2881 .......... .......... .......... .......... .......... .......... 2941 .......... .......... .......... .......... .......... .......... 3001 .......... .......... .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .......... .......... 3181 .......... .......... .......... .......... .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .......... .......... .......... 3361 .......... .......... .......... .......... .......... .......... 3421 .......... .......... .......... .......... .......... .......... 3481 .......... .......... .......... .......... .......... .......... 3541 .......... .......... .......... .......... .......... .......... 3601 .......... .......... .......... .......... .......... .......... 3661 .......... .......... .......... .......... .......... .......... 3721 .......... .......... .......... .......... .......... .......... 3781 .....-.... .......... .......... .......... .......... .......... 3841 .......... .......... .......... .......... .......... .......... 3901 .......... .......... .......... .......... .......... .......... 3961 .......... .......... .......... .......... .......... .......... 4021 .......... .......... .......... .......... .......... .......... 4081 .......... .......... .......... .......... .......... .......... 4141 .......... .......... .......... .......... .......... .......... 4201 .......... .......... .......... .......... .......... .......... 4261 .......... .......... .......... .......... .......... .......... 4321 .......... .......... .......... .......... .......... .......... 4381 .......... .......... .......... .......... .......... .......... 4441 .......... .......... .......... .......... .......... .......... 4501 .......... .......... .......... .......... .......... .......... 4561 .......... .......... .......... .......... .......... .......... 4621 .......... .......... .......... .......... .......... .......... 4681 .......... .......... .......... .......... .......... .......... 4741 .......... .......... .......... .......... .......... .......... 4801 .......... .......... .......... ..)....... .......... .......... 4861 .......... .......... .......... .......... .......... .......... 4921 .......... .......... .......... .......... .......... .......... 4981 .......... .......... .......... .......... .......... .......... 5041 .......... .......... .......... .......... .......... .......... 5101 .......... .......... .......... .......... .......... .......... 5161 .......... .......... .......... .......... .......... .......... 5221 .......... .......... .......... .......... .......... .......... 5281 .......... .......... .......... .......... .......... .......... 5341 .......... .......... .......... .......... .......... .......... 5401 .......... .......... .......... .......... .......... .......... 5461 .......... .......... .......... .......... .......... .......... 5521 .......... .......... .......... .......... .......... .......... 5581 .......... .......... .......... .......... .......... .......... 5641 .......... .......... .......... .......... .......... .......... 5701 .......... .......... .......... .......... .......... .......... 5761 .......... .......... .......... .......... .......... .......... 5821 .......... .......... .......... .......... .......... .......... 5881 .......... .......... .......... .......... .......... .......... 5941 .......... .......... .......... .......... .......... .......... 6001 .......... .......... .......... .......... .......... .......... 6061 .......... .......... .......... .......... .......... .......... 6121 .......... .......... .......... .......... .......... .......... 6181 .......... .......... .......... .......... .......... .......... 6241 .......... .......... .......... .......... .......... .......... 6301 .......... .......... .......... .......... .......... .......... 6361 .......... .......... .......... .......... .......... .......... 6421 .......... .......... .......... .......... .......... .......... 6481 .......... .......... .......... .......... .......... .......... 6541 .......... .......... .......... .......... .......... .......... 6601 .......... .......... .......... .......... .......... .......... 6661 .......... .......... .......... .......... .......... .......... 6721 .......... .......... .......... .......... .......... .......... 6781 .......... .......... .......... .......... .......... .......... 6841 .......... .......... .......... .......... .......... .......... 6901 .......... .......... .......... .......... .......... .......... 6961 .......... .......... .......... .......... .......... .......... 7021 .......... .......... .......... .......... .......... .......... 7081 .......... .......... .......... .......... .......... .......... 7141 .......... .......... .......... .......... .......... .......... 7201 .......... .......... .......... .......... .......... .......... 7261 .......... .......... .......... .......... .......... .......... 7321 .......... .......... .......... .......... .......... .......... 7381 .......... .......... .......... .......... .......... .......... 7441 .......... .......... .......... .......... .......... .......... 7501 .......... .......... .......... .......... .......... .......... 7561 .......... .......... .......... .......... .......... .......... 7621 .......... .......... .......... .......... .......... .......... 7681 .......... .......... .......... .......... .......... .......... 7741 .......... .......... .......... .......... .......... .......... 7801 .......... .......... .......... .......... .......... .......... 7861 .......... .......... .......... .......... .......... .......... 7921 .......... .......... .......... .......... .......... .......... 7981 .......... .......... .......... .......... .......... .......... 8041 .......... .......... .......... .......... .......... .......... 8101 .......... .......... .......... .......... .......... .......... 8161 .......... .......... .......... .......... .......... .......... 8221 .......... .......... .......... .......... .......... .......... 8281 .......... .......... .......... .......... .......... .......... 8341 .......... .......... .......... .......... .......... .......... 8401 .......... .......... .......... .......... .......... .......... 8461 .......... .......... .......... .......... .......... .......... 8521 .......... .......... .......... .......... .......... .......... 8581 .......... .......... .......... .......... .......... .......... 8641 .......... .......... .......... .......... .......... .......... 8701 .......... .......... .......... .......... .......... .......... 8761 .......... .......... .......... .......... .......... .......... 8821 .......... .......... .......... .......... .......... .......... 8881 .......... .......... .......... .......... .......... .......... 8941 .......... .......... .......... .......... .......... .......... 9001 .......... .......... .......... .......... .......... .......... 9061 .......... .......... .......... .......... .......... .......... 9121 .......... .......... .......... .......... .......... .......... 9181 .......... .......... .......... .......... .......... .......... 9241 .......... .......... .......... .......... .......... .......... 9301 .......... .......... .......... .......... .......... .......... 9361 .......... .......... .......... .......... .......... .......... 9421 .......... .......... .......... .......... .......... .......... 9481 .......... .......... .......... .......... .......... .......... 9541 .......... .......... .......... .......... .......... .......... 9601 .......... .......... .......... .......... .......... .......... 9661 .......... .......... .......... .......... .......... .......... 9721 .......... .......... .......... .......... .......... .......... 9781 .......... .......... .......... .......... .......... .......... 9841 .......... .......... .......... .......... .......... .......... 9901 .......... .......... .......... .......... .......... .......... 9961 .......... .......... .......... .......... .......... .......... 10021 .......... .......... .......... .......... .......... .......... 10081 .......... .......... .......... .......... .......... .......... 10141 .......... .......... .......... .......... .......... .......... 10201 .......... .......... .......... .......... .......... .......... 10261 .......... .......... .......... .......... .......... .......... 10321 .......... .......... .......... .......... .......... .......... 10381 .......... .......... .......... .......... .......... .......... 10441 .......... .......... .......... .......... .......... .......... 10501 .......... .......... .......... .......... .......... .......... 10561 .......... .......... .......... .......... .......... .......... 10621 .......... .......... .......... .......... .......... .......... 10681 .......... .......... .......... .......... .......... .......... 10741 .......... .......... .......... ||||| // LOCUS (8)-DEUTER 10775 bp RNA RNA 09-JAN-1999 DEFINITION DEUTEROSTOMIA. ACCESSION No information KEYWORDS No information. SOURCE DEUTEROSTOMIA. ORGANISM DEUTEROSTOMIA. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 10775) Corresponding GenBank entry: DIVIDER BASE COUNT 0 a 0 c 0 g 0 t 10775 others ORIGIN 1 |......... .......... .......... .......... .......... .......... 61 .......... .......... .......... .......... .......... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......... .......... .......... .......... 241 .......... .......... .......... .......... .......... .......... 301 .......... .......... .......... .......... .......... .......... 361 .......... .......... .......... .......... .......... .......... 421 .......... .......... .......... .......... .......... .......... 481 .......... .......... .......... .......... .......... .......... 541 .......... .......... .......... .......... .......... .......... 601 .......... .......... .......... .......... .......... .......... 661 .......... .......... .......... .......... .......... .......... 721 .......... .......... .......... .......... .......... .......... 781 .......... .......... .......... .......... .......... .......... 841 .......... .......... .......... .......... .......... .......... 901 .......... .......... .......... .......... .......... .......... 961 .......... .......... .......... .......... .......... .......... 1021 .......... .......... .......... .......... .......... .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .......... .......... .......... .......... .......... 1201 .......... .......... .......... .......... .......... .......... 1261 .......... .......... .......... .......... .......... .......... 1321 .......... .......... .......... .......... .......... .......... 1381 .......... .......... .......... .......... .......... .......... 1441 .......... .......... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... .......... .......... .......... .......... .......... 1621 .......... .......... .......... .......... .......... .......... 1681 .......... .......... .......... .......... .......... .......... 1741 .......... .......... .......... .......... .......... .......... 1801 .......... .......... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .......... .......... 1921 .......... .......... .......... .......... .......... .......... 1981 .......... .......... .......... .......... .......... .......... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... .......... .......... .......... .......... .......... 2161 .......... .......... .......... .......... .......... .......... 2221 .......... .......... .......... .......... .......... .......... 2281 .......... .......... .......... .......... .......... .......... 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... .......... 2701 .......... .......... .......... .......... .......... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... .......... 2881 .......... .......... .......... .......... .......... .......... 2941 .......... .......... .......... .......... .......... .......... 3001 .......... .......... .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .......... .......... 3181 .......... .......... .......... .......... .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .......... .......... .......... 3361 .......... .......... .......... .......... .......... .......... 3421 .......... .......... .......... .......... .......... .......... 3481 .......... .......... .......... .......... .......... .......... 3541 .......... .......... .......... .......... .......... .......... 3601 .......... .......... .......... .......... .......... .......... 3661 .......... .......... .......... .......... .......... .......... 3721 .......... .......... .......... .......... .......... .......... 3781 .....-.... .......... .......... .......... .......... .......... 3841 .......... .......... .......... .......... .......... .......... 3901 .......... .......... .......... .......... .......... .......... 3961 .......... .......... .......... .......... .......... .......... 4021 .......... .......... .......... .......... .......... .......... 4081 .......... .......... .......... .......... .......... .......... 4141 .......... .......... .......... .......... .......... .......... 4201 .......... .......... .......... .......... .......... .......... 4261 .......... .......... .......... .......... .......... .......... 4321 .......... .......... .......... .......... .......... .......... 4381 .......... .......... .......... .......... .......... .......... 4441 .......... .......... .......... .......... .......... .......... 4501 .......... .......... .......... .......... .......... .......... 4561 .......... .......... .......... .......... .......... .......... 4621 .......... .......... .......... .......... .......... .......... 4681 .......... .......... .......... .......... .......... .......... 4741 .......... .......... .......... .......... .......... .......... 4801 .......... .......... .......... ..)....... .......... .......... 4861 .......... .......... .......... .......... .......... .......... 4921 .......... .......... .......... .......... .......... .......... 4981 .......... .......... .......... .......... .......... .......... 5041 .......... .......... .......... .......... .......... .......... 5101 .......... .......... .......... .......... .......... .......... 5161 .......... .......... .......... .......... .......... .......... 5221 .......... .......... .......... .......... .......... .......... 5281 .......... .......... .......... .......... .......... .......... 5341 .......... .......... .......... .......... .......... .......... 5401 .......... .......... .......... .......... .......... .......... 5461 .......... .......... .......... .......... .......... .......... 5521 .......... .......... .......... .......... .......... .......... 5581 .......... .......... .......... .......... .......... .......... 5641 .......... .......... .......... .......... .......... .......... 5701 .......... .......... .......... .......... .......... .......... 5761 .......... .......... .......... .......... .......... .......... 5821 .......... .......... .......... .......... .......... .......... 5881 .......... .......... .......... .......... .......... .......... 5941 .......... .......... .......... .......... .......... .......... 6001 .......... .......... .......... .......... .......... .......... 6061 .......... .......... .......... .......... .......... .......... 6121 .......... .......... .......... .......... .......... .......... 6181 .......... .......... .......... .......... .......... .......... 6241 .......... .......... .......... .......... .......... .......... 6301 .......... .......... .......... .......... .......... .......... 6361 .......... .......... .......... .......... .......... .......... 6421 .......... .......... .......... .......... .......... .......... 6481 .......... .......... .......... .......... .......... .......... 6541 .......... .......... .......... .......... .......... .......... 6601 .......... .......... .......... .......... .......... .......... 6661 .......... .......... .......... .......... .......... .......... 6721 .......... .......... .......... .......... .......... .......... 6781 .......... .......... .......... .......... .......... .......... 6841 .......... .......... .......... .......... .......... .......... 6901 .......... .......... .......... .......... .......... .......... 6961 .......... .......... .......... .......... .......... .......... 7021 .......... .......... .......... .......... .......... .......... 7081 .......... .......... .......... .......... .......... .......... 7141 .......... .......... .......... .......... .......... .......... 7201 .......... .......... .......... .......... .......... .......... 7261 .......... .......... .......... .......... .......... .......... 7321 .......... .......... .......... .......... .......... .......... 7381 .......... .......... .......... .......... .......... .......... 7441 .......... .......... .......... .......... .......... .......... 7501 .......... .......... .......... .......... .......... .......... 7561 .......... .......... .......... .......... .......... .......... 7621 .......... .......... .......... .......... .......... .......... 7681 .......... .......... .......... .......... .......... .......... 7741 .......... .......... .......... .......... .......... .......... 7801 .......... .......... .......... .......... .......... .......... 7861 .......... .......... .......... .......... .......... .......... 7921 .......... .......... .......... .......... .......... .......... 7981 .......... .......... .......... .......... .......... .......... 8041 .......... .......... .......... .......... .......... .......... 8101 .......... .......... .......... .......... .......... .......... 8161 .......... .......... .......... .......... .......... .......... 8221 .......... .......... .......... .......... .......... .......... 8281 .......... .......... .......... .......... .......... .......... 8341 .......... .......... .......... .......... .......... .......... 8401 .......... .......... .......... .......... .......... .......... 8461 .......... .......... .......... .......... .......... .......... 8521 .......... .......... .......... .......... .......... .......... 8581 .......... .......... .......... .......... .......... .......... 8641 .......... .......... .......... .......... .......... .......... 8701 .......... .......... .......... .......... .......... .......... 8761 .......... .......... .......... .......... .......... .......... 8821 .......... .......... .......... .......... .......... .......... 8881 .......... .......... .......... .......... .......... .......... 8941 .......... .......... .......... .......... .......... .......... 9001 .......... .......... .......... .......... .......... .......... 9061 .......... .......... .......... .......... .......... .......... 9121 .......... .......... .......... .......... .......... .......... 9181 .......... .......... .......... .......... .......... .......... 9241 .......... .......... .......... .......... .......... .......... 9301 .......... .......... .......... .......... .......... .......... 9361 .......... .......... .......... .......... .......... .......... 9421 .......... .......... .......... .......... .......... .......... 9481 .......... .......... .......... .......... .......... .......... 9541 .......... .......... .......... .......... .......... .......... 9601 .......... .......... .......... .......... .......... .......... 9661 .......... .......... .......... .......... .......... .......... 9721 .......... .......... .......... .......... .......... .......... 9781 .......... .......... .......... .......... .......... .......... 9841 .......... .......... .......... .......... .......... .......... 9901 .......... .......... .......... .......... .......... .......... 9961 .......... .......... .......... .......... .......... .......... 10021 .......... .......... .......... .......... .......... .......... 10081 .......... .......... .......... .......... .......... .......... 10141 .......... .......... .......... .......... .......... .......... 10201 .......... .......... .......... .......... .......... .......... 10261 .......... .......... .......... .......... .......... .......... 10321 .......... .......... .......... .......... .......... .......... 10381 .......... .......... .......... .......... .......... .......... 10441 .......... .......... .......... .......... .......... .......... 10501 .......... .......... .......... .......... .......... .......... 10561 .......... .......... .......... .......... .......... .......... 10621 .......... .......... .......... .......... .......... .......... 10681 .......... .......... .......... .......... .......... .......... 10741 .......... .......... .......... ||||| // LOCUS (9)-CHORDA 10775 bp RNA RNA 09-JAN-1999 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 10775) Corresponding GenBank entry: DIVIDER BASE COUNT 0 a 0 c 0 g 0 t 10775 others ORIGIN 1 |......... .......... .......... .......... .......... .......... 61 .......... .......... .......... .......... .......... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......... .......... .......... .......... 241 .......... .......... .......... .......... .......... .......... 301 .......... .......... .......... .......... .......... .......... 361 .......... .......... .......... .......... .......... .......... 421 .......... .......... .......... .......... .......... .......... 481 .......... .......... .......... .......... .......... .......... 541 .......... .......... .......... .......... .......... .......... 601 .......... .......... .......... .......... .......... .......... 661 .......... .......... .......... .......... .......... .......... 721 .......... .......... .......... .......... .......... .......... 781 .......... .......... .......... .......... .......... .......... 841 .......... .......... .......... .......... .......... .......... 901 .......... .......... .......... .......... .......... .......... 961 .......... .......... .......... .......... .......... .......... 1021 .......... .......... .......... .......... .......... .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .......... .......... .......... .......... .......... 1201 .......... .......... .......... .......... .......... .......... 1261 .......... .......... .......... .......... .......... .......... 1321 .......... .......... .......... .......... .......... .......... 1381 .......... .......... .......... .......... .......... .......... 1441 .......... .......... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... .......... .......... .......... .......... .......... 1621 .......... .......... .......... .......... .......... .......... 1681 .......... .......... .......... .......... .......... .......... 1741 .......... .......... .......... .......... .......... .......... 1801 .......... .......... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .......... .......... 1921 .......... .......... .......... .......... .......... .......... 1981 .......... .......... .......... .......... .......... .......... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... .......... .......... .......... .......... .......... 2161 .......... .......... .......... .......... .......... .......... 2221 .......... .......... .......... .......... .......... .......... 2281 .......... .......... .......... .......... .......... .......... 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... .......... 2701 .......... .......... .......... .......... .......... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... .......... 2881 .......... .......... .......... .......... .......... .......... 2941 .......... .......... .......... .......... .......... .......... 3001 .......... .......... .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .......... .......... 3181 .......... .......... .......... .......... .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .......... .......... .......... 3361 .......... .......... .......... .......... .......... .......... 3421 .......... .......... .......... .......... .......... .......... 3481 .......... .......... .......... .......... .......... .......... 3541 .......... .......... .......... .......... .......... .......... 3601 .......... .......... .......... .......... .......... .......... 3661 .......... .......... .......... .......... .......... .......... 3721 .......... .......... .......... .......... .......... .......... 3781 .....-.... .......... .......... .......... .......... .......... 3841 .......... .......... .......... .......... .......... .......... 3901 .......... .......... .......... .......... .......... .......... 3961 .......... .......... .......... .......... .......... .......... 4021 .......... .......... .......... .......... .......... .......... 4081 .......... .......... .......... .......... .......... .......... 4141 .......... .......... .......... .......... .......... .......... 4201 .......... .......... .......... .......... .......... .......... 4261 .......... .......... .......... .......... .......... .......... 4321 .......... .......... .......... .......... .......... .......... 4381 .......... .......... .......... .......... .......... .......... 4441 .......... .......... .......... .......... .......... .......... 4501 .......... .......... .......... .......... .......... .......... 4561 .......... .......... .......... .......... .......... .......... 4621 .......... .......... .......... .......... .......... .......... 4681 .......... .......... .......... .......... .......... .......... 4741 .......... .......... .......... .......... .......... .......... 4801 .......... .......... .......... ..)....... .......... .......... 4861 .......... .......... .......... .......... .......... .......... 4921 .......... .......... .......... .......... .......... .......... 4981 .......... .......... .......... .......... .......... .......... 5041 .......... .......... .......... .......... .......... .......... 5101 .......... .......... .......... .......... .......... .......... 5161 .......... .......... .......... .......... .......... .......... 5221 .......... .......... .......... .......... .......... .......... 5281 .......... .......... .......... .......... .......... .......... 5341 .......... .......... .......... .......... .......... .......... 5401 .......... .......... .......... .......... .......... .......... 5461 .......... .......... .......... .......... .......... .......... 5521 .......... .......... .......... .......... .......... .......... 5581 .......... .......... .......... .......... .......... .......... 5641 .......... .......... .......... .......... .......... .......... 5701 .......... .......... .......... .......... .......... .......... 5761 .......... .......... .......... .......... .......... .......... 5821 .......... .......... .......... .......... .......... .......... 5881 .......... .......... .......... .......... .......... .......... 5941 .......... .......... .......... .......... .......... .......... 6001 .......... .......... .......... .......... .......... .......... 6061 .......... .......... .......... .......... .......... .......... 6121 .......... .......... .......... .......... .......... .......... 6181 .......... .......... .......... .......... .......... .......... 6241 .......... .......... .......... .......... .......... .......... 6301 .......... .......... .......... .......... .......... .......... 6361 .......... .......... .......... .......... .......... .......... 6421 .......... .......... .......... .......... .......... .......... 6481 .......... .......... .......... .......... .......... .......... 6541 .......... .......... .......... .......... .......... .......... 6601 .......... .......... .......... .......... .......... .......... 6661 .......... .......... .......... .......... .......... .......... 6721 .......... .......... .......... .......... .......... .......... 6781 .......... .......... .......... .......... .......... .......... 6841 .......... .......... .......... .......... .......... .......... 6901 .......... .......... .......... .......... .......... .......... 6961 .......... .......... .......... .......... .......... .......... 7021 .......... .......... .......... .......... .......... .......... 7081 .......... .......... .......... .......... .......... .......... 7141 .......... .......... .......... .......... .......... .......... 7201 .......... .......... .......... .......... .......... .......... 7261 .......... .......... .......... .......... .......... .......... 7321 .......... .......... .......... .......... .......... .......... 7381 .......... .......... .......... .......... .......... .......... 7441 .......... .......... .......... .......... .......... .......... 7501 .......... .......... .......... .......... .......... .......... 7561 .......... .......... .......... .......... .......... .......... 7621 .......... .......... .......... .......... .......... .......... 7681 .......... .......... .......... .......... .......... .......... 7741 .......... .......... .......... .......... .......... .......... 7801 .......... .......... .......... .......... .......... .......... 7861 .......... .......... .......... .......... .......... .......... 7921 .......... .......... .......... .......... .......... .......... 7981 .......... .......... .......... .......... .......... .......... 8041 .......... .......... .......... .......... .......... .......... 8101 .......... .......... .......... .......... .......... .......... 8161 .......... .......... .......... .......... .......... .......... 8221 .......... .......... .......... .......... .......... .......... 8281 .......... .......... .......... .......... .......... .......... 8341 .......... .......... .......... .......... .......... .......... 8401 .......... .......... .......... .......... .......... .......... 8461 .......... .......... .......... .......... .......... .......... 8521 .......... .......... .......... .......... .......... .......... 8581 .......... .......... .......... .......... .......... .......... 8641 .......... .......... .......... .......... .......... .......... 8701 .......... .......... .......... .......... .......... .......... 8761 .......... .......... .......... .......... .......... .......... 8821 .......... .......... .......... .......... .......... .......... 8881 .......... .......... .......... .......... .......... .......... 8941 .......... .......... .......... .......... .......... .......... 9001 .......... .......... .......... .......... .......... .......... 9061 .......... .......... .......... .......... .......... .......... 9121 .......... .......... .......... .......... .......... .......... 9181 .......... .......... .......... .......... .......... .......... 9241 .......... .......... .......... .......... .......... .......... 9301 .......... .......... .......... .......... .......... .......... 9361 .......... .......... .......... .......... .......... .......... 9421 .......... .......... .......... .......... .......... .......... 9481 .......... .......... .......... .......... .......... .......... 9541 .......... .......... .......... .......... .......... .......... 9601 .......... .......... .......... .......... .......... .......... 9661 .......... .......... .......... .......... .......... .......... 9721 .......... .......... .......... .......... .......... .......... 9781 .......... .......... .......... .......... .......... .......... 9841 .......... .......... .......... .......... .......... .......... 9901 .......... .......... .......... .......... .......... .......... 9961 .......... .......... .......... .......... .......... .......... 10021 .......... .......... .......... .......... .......... .......... 10081 .......... .......... .......... .......... .......... .......... 10141 .......... .......... .......... .......... .......... .......... 10201 .......... .......... .......... .......... .......... .......... 10261 .......... .......... .......... .......... .......... .......... 10321 .......... .......... .......... .......... .......... .......... 10381 .......... .......... .......... .......... .......... .......... 10441 .......... .......... .......... .......... .......... .......... 10501 .......... .......... .......... .......... .......... .......... 10561 .......... .......... .......... .......... .......... .......... 10621 .......... .......... .......... .......... .......... .......... 10681 .......... .......... .......... .......... .......... .......... 10741 .......... .......... .......... ||||| // LOCUS mt.P.stolo 10775 bp RNA RNA 11-JAN-191 DEFINITION Pyura stolonifera. ACCESSION No information KEYWORDS No information. SOURCE Pyura stolonifera. ORGANISM Pyura stolonifera. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 10775) Corresponding GenBank entry: X74513 ID MIPS16SRA standard; DNA; ORG; 1556 BP. XX AC X74513; XX DT 25-SEP-1993 (Rel. 37, Created) DT 25-SEP-1993 (Rel. 37, Last updated, Version 2) XX DE P.stolonifera mitochondrial 16S ribosmal RNA gene XX KW 16S ribosomal RNA. XX OS Pyura stolonifera OC Eukaryota; Animalia; Metazoa; Chordata; Tunicata; Ascidiacea; OC Stolidobranchia; Pyuridae. XX OG Mitochondrion XX RN [1] RA Crafford T., Durrheim G.A., Corfield V.A.; RT "Sequence of the Mitochondrial tRNAHis gene from the Tunicate RT Pyura stolonifera"; RL Unpublished. XX RN [2] RP 1-1556 RA Crafford T.T.; RT ; RL Submitted (13-SEP-1993) on tape to the EMBL Data Library by: RL T.T. Crafford, Centre for Molecular & Cellular Biology, University RL of Stellenbosch Med. School, Tygerberg, 7505, SOUTH AFRICA XX FH Key Location/Qualifiers FH FT source 1..1556 FT /organism="Pyura stolonifera" FT /mitochondrion XX SQ Sequence 1556 BP; 511 A; 136 C; 304 G; 605 T; 0 other; BASE COUNT 511 a 136 c 304 g 605 t 9219 others ORIGIN 1 |cuuguuauu uugcugauga uccucguuau auauuauaua gau--aguau u-uuguguau 61 guccguuuau aagcuguuug aaacguuuuu gauaaaauuu caggucgcca ugcuuauauc 121 uaugaauuua ugaguuacag uauauuuucu auaaaaaucu gaauugagau auuuugugaa 181 uuaggacuua uuaga----- ---------- ----uaaaaa gaggaaauua uucuguuuug 241 a--------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---- ---------- |-----gaaa 841 uaa(uucu)u u--------- ---------- ---------- ---------- ------aaua 901 ugag------ ---------- |----uaGA- -GUAU-U(-- GGGA)AAGAA -gu------- 961 ------------- 1201 ---------- ---------- ---------- ---------< ---------- ---------- 1261 ---------- ---------- ---------> ---------- ---------- ---|-(---) 1321 ---------- ---------- ---------- ---------- ---------- ---------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- ---------- ---------- ---------- 1561 ---------- ---------- ---------- ---------- ---------- ---------- 1621 ---------- ------uaau auug-uugu- ----GUAAA( -GUUA-)UUC ---UAUA--- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- --<------- -aua------ ---------- ---------- 1861 -gaag>uuag guuauauuu- --------<- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------> (----auuug 2041 --)------- --aaaugu-U UGCCUU(UU- GUAUA)AUGA |AUU-GACGA GU--g--uua 2101 uag------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ------<--- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 -------uuu gguu->---- ---------- ---------- ---------- ------ua-a 2701 uaa-auCUCG AA-AAACU-U UGauuuaguu uga-uu---- ---------- ---------- 2761 -(-------- ---------- ---------- ---------- ----guuug) ---------- 2821 ---------- -u-u-UCUU( GUUGAAA-U) AAGA-aag-- ---uaaagu- caaguua-gG 2881 GU(G-AAAC) ACU-AGUC-A G-AUGGUUAG AUAUCU-AGU UUUUG--UUG GA-GGG-UCU 2941 (-auu-)AUG UU-ag----- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 --------|- ---------- ---------- ---------- ---------- ---------- 3121 ---------- ---------- ---------- ---------- ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ------AUUA CAGGA--UG- AA-GG(-GUC 3481 -AG)CUUUCA UC-CU----- uuaag--aau -uaaguauuu ugguuaaguu auuaaauuua 3541 uuuuauuugu aau------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ---------- ---------- ---------- ---------- ---------- ---------- 3781 ---------- -------(-- --)------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- -------|-- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- ---------- 4021 ---------- ---------- ---------- ---------- ---------- ---------- 4081 ---------- ---------| ---------- ---------- ---------- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- ---------- ---------- ---------- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- -------uuu aaggg-ag|u gc-uuuug-- ---------- 4501 ---------- ---------- (gaaa---)< ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ------->-- ---------- ---------| --caaaugau uuAAUGU-UA 4681 AC|UCGAGUA -CUAA-uu-- ---------- (--------- ---------- ---------- 4741 ---------- -----)---- ------|--- ---------- ---------- -|-------- 4801 ---------- ---------- ---------- --)------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ------|--- ---------- |--------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ---------- ---------- 5221 ---------- ---------- ---------- ---------- ---------- ---------- 5281 ---------- ---------- ---------- ---------- ---------- ---------- 5341 ---------- ---------- ---------- ---------- ---------- ---------- 5401 ---------- ---------- ---------- ---------- ---------- ---------- 5461 ---------- ---------- ---|------ ---------- ---------- ---------- 5521 |--------- ---------- ---------- ---------- ---------- ---------- 5581 --<------- ---------- ---------- ---------- ---------- ---------- 5641 ---------- ---------- ------->-- ---------- ---------- ---<------ 5701 ---------- ---------- ---------- ---------- ---------- ---------- 5761 ---------- ---------- ---------- ---------- ---------- ---------- 5821 ---------- ---------- ---------- ---------- ---------- ---------- 5881 ---------- ---------- ---------- ---------- ---------- ---------- 5941 ---------- ---------- ---------- ---------- ---------- ---------- 6001 ---------- ---------- ---------- ---------- ---------- ---------- 6061 ---------- ---------- ---------- ---------- ---------- ---------- 6121 ---------- ---------- ---------- ---------- ---------- ---------- 6181 ---------- ---------- ---------- ---------- ---------- ---------- 6241 ---------- ---------- ---------- ---------- ---------- ---------- 6301 ---------- ---------- ---------- ---------- ---------- ---------- 6361 ---------- ---------- ---------- ---------- ---------- ---------- 6421 ---------- ---------- ------>--- ---------- ---------- -------|-- 6481 ---------- -(------)- ---------- ----(----- ------)--- -----uugu| 6541 |---uuu--U u--aaaaUUA -AAUC-AGGA AUUCGACAAA ---------- ----(----- 6601 )--------- ---|------ ---------- -----(---- ---)<----- ---------- 6661 ---------- ---------- ---------- ---------- ---------- ---------- 6721 ---------- ---------- ---------- ---------- --->------ ---------- 6781 ----|-(--- )--------a aaAUAGCU|C GU---AUG-U UU(AAUAA)A GA-CAUA-GU 6841 UUAUUG|A-- ---------- ---------- (--guc---- ------)--- ---------- 6901 ------UUA- UAA-UAAAUC AGAUCU<--- ---------- ---------- ---------- 6961 ---------- ---------- -------->G CU-CA-AU|G U--------- ---------- 7021 ---------- --(------- ---------- ---------- ---------- ---------- 7081 ---------- ---------- ---------a agu)------ ---------- ---------| 7141 ----AUA-AA U-|AG-C|-G -GGG---(G- --UUU)--UC UU|U(UAA)- AG-UAGCGUA 7201 AUA-AU-U-U |GUCUAU(-U AAUU-)GUAG AC|UA-GU-- GAAAGAUUAG C-CG-GGUUA 7261 Ug-------- ---------- -------auu uUCUUGUUUA Aaa-----gu ----ag-uaa 7321 au|u|uuuuU UA-AG(UCGA AAAUA)CUUA AAU----AUU CAAAAAAGAA AAAAAGCACC 7381 CUA-GG-|-U GGUUA--AAA UU|-aa--gu guauguua-| <--------- ---------- 7441 ---------- ---------- --->------ ---------- ---------- ---------- 7501 ---------- ---------- ---------- --<------- ---------- -------uug 7561 ug-u------ ---------- ---------- ---------- ---------- ---------- 7621 ---------- ---------- ---------> --(------- -)-------- ---------- 7681 ---------- -------|-- ---------- ---------- ---------- ---------- 7741 -----(---- ----)----- ---------- ---------- ---------- ---------- 7801 ---------- ---------- ---------- ---------- ---------- ---------- 7861 ---------- ---------- ---------- ---------- ---------- ---------- 7921 ---------- ---------- ---------- ---------- ---------- ---------- 7981 ---------- ---------- ---------- ---------- ---------- ---------- 8041 ---------- ---------- ---------- ---------- ---------- ---------- 8101 ---------- ---------- ----->---u ggaau-a-ua -uug--A-GG UUUAAGUUG( 8161 GGG)UA-AC- U|AUUAGA(- --------aa uau--aauu- )UCUA-AU|g |u|uuu--|< 8221 ---------- ---------- ---------- ---------- ---------- ---------- 8281 ---------- ---------- ---------- ---------- ---------- ---------- 8341 ---------- ---------- ---------- ---------- ---------- ->-------- 8401 ---------- ------<--- ---------- ---------- ---------- ---------- 8461 ---------- ---------- ---------- ---------- ---------- ---------- 8521 ---------- ---------- ---------- ---------- ---------- ---------- 8581 ---------- ---------- ---------- ---------- ---------- ---------- 8641 ---------- ---------> (--------- )--------- ---------- ---------- 8701 ---------- ---------- ---------- -------|-- (-|-----)- ---------- 8761 ---------- ---------( ---------- )--------- ---------- ---------- 8821 ---------- ---------- ---------- ------uag- -a-------- ----cu--ag 8881 a|---gc--- ---uu-aguu uu-u------ ---------- ---(------ ---------- 8941 ---------- ---------- ---------- ---------- ---------u ga)--|agaa 9001 gcuuuuuac- |uau-agAAC CAACCC|UAG G|GAUAACAG |C-GCA-A-U UAACUAUAUA 9061 AG(U--UCAU )AUUUAuUAG --UUAGGUUA CG-ACCUCGA UGUC|GG--C U|U-AGAUA| 9121 UU-CU-AUUA AG-CG(--CA -GA)AGCUUA AUGG-GUU|U UGUU(UGUUC )UCCAA-GUA 9181 ---GAAUCU- --ACGUGAGU UGGGUUUAGA AC|GA-G(GU GA)CUUAGUU UAGAUUUUUU 9241 CU|UUUau-- --|-|<---- ---------- ---------- ---------- -----augu- 9301 >--------- ---------- --a-uua-ua gu--(UAGU- AC(-GAAA)G GAAU-)ucua 9361 u--ua-<--- ---------- ---------- -------->a aauuu----- ---------- 9421 -|-------- (-----)<-- ---------- ---------- ---------- ---------- 9481 ---------- ---------- ---------- ---------- ---------- -----uga-> 9541 ---------- ---------- -----aaguu gauaaaaacc augg~~~~~~ ~~~~~~~~~~ 9601 ~~~~~~~~~~ ~~~~~~~~~~ (~~~~~~~~~ ~~~~~)~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9661 ~~~~~~~~~~ ~~~~~~~<~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~>~~| ~~~~~~(~~~ )~~~~~~~~~ ~~~~~~~|~~ 9961 ~~~(~~~~~~ ~~~)~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10021 ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~~~ 10141 ~~~~~~~~~~ ~~~~~~~~~~ ~)~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10201 ~~~~~~~~~~ ~|~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10321 ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ||||| // LOCUS (10)-CEPHA 10775 bp RNA RNA 09-JAN-1999 DEFINITION CEPHALOCHORDATA. ACCESSION No information KEYWORDS No information. SOURCE CEPHALOCHORDATA. ORGANISM CEPHALOCHORDATA. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 10775) Corresponding GenBank entry: DIVIDER BASE COUNT 0 a 0 c 0 g 0 t 10775 others ORIGIN 1 |......... .......... .......... .......... .......... .......... 61 .......... .......... .......... .......... .......... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......... .......... .......... .......... 241 .......... .......... .......... .......... .......... .......... 301 .......... .......... .......... .......... .......... .......... 361 .......... .......... .......... .......... .......... .......... 421 .......... .......... .......... .......... .......... .......... 481 .......... .......... .......... .......... .......... .......... 541 .......... .......... .......... .......... .......... .......... 601 .......... .......... .......... .......... .......... .......... 661 .......... .......... .......... .......... .......... .......... 721 .......... .......... .......... .......... .......... .......... 781 .......... .......... .......... .......... .......... .......... 841 .......... .......... .......... .......... .......... .......... 901 .......... .......... .......... .......... .......... .......... 961 .......... .......... .......... .......... .......... .......... 1021 .......... .......... .......... .......... .......... .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .......... .......... .......... .......... .......... 1201 .......... .......... .......... .......... .......... .......... 1261 .......... .......... .......... .......... .......... .......... 1321 .......... .......... .......... .......... .......... .......... 1381 .......... .......... .......... .......... .......... .......... 1441 .......... .......... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... .......... .......... .......... .......... .......... 1621 .......... .......... .......... .......... .......... .......... 1681 .......... .......... .......... .......... .......... .......... 1741 .......... .......... .......... .......... .......... .......... 1801 .......... .......... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .......... .......... 1921 .......... .......... .......... .......... .......... .......... 1981 .......... .......... .......... .......... .......... .......... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... .......... .......... .......... .......... .......... 2161 .......... .......... .......... .......... .......... .......... 2221 .......... .......... .......... .......... .......... .......... 2281 .......... .......... .......... .......... .......... .......... 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... .......... 2701 .......... .......... .......... .......... .......... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... .......... 2881 .......... .......... .......... .......... .......... .......... 2941 .......... .......... .......... .......... .......... .......... 3001 .......... .......... .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .......... .......... 3181 .......... .......... .......... .......... .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .......... .......... .......... 3361 .......... .......... .......... .......... .......... .......... 3421 .......... .......... .......... .......... .......... .......... 3481 .......... .......... .......... .......... .......... .......... 3541 .......... .......... .......... .......... .......... .......... 3601 .......... .......... .......... .......... .......... .......... 3661 .......... .......... .......... .......... .......... .......... 3721 .......... .......... .......... .......... .......... .......... 3781 .....-.... .......... .......... .......... .......... .......... 3841 .......... .......... .......... .......... .......... .......... 3901 .......... .......... .......... .......... .......... .......... 3961 .......... .......... .......... .......... .......... .......... 4021 .......... .......... .......... .......... .......... .......... 4081 .......... .......... .......... .......... .......... .......... 4141 .......... .......... .......... .......... .......... .......... 4201 .......... .......... .......... .......... .......... .......... 4261 .......... .......... .......... .......... .......... .......... 4321 .......... .......... .......... .......... .......... .......... 4381 .......... .......... .......... .......... .......... .......... 4441 .......... .......... .......... .......... .......... .......... 4501 .......... .......... .......... .......... .......... .......... 4561 .......... .......... .......... .......... .......... .......... 4621 .......... .......... .......... .......... .......... .......... 4681 .......... .......... .......... .......... .......... .......... 4741 .......... .......... .......... .......... .......... .......... 4801 .......... .......... .......... ..)....... .......... .......... 4861 .......... .......... .......... .......... .......... .......... 4921 .......... .......... .......... .......... .......... .......... 4981 .......... .......... .......... .......... .......... .......... 5041 .......... .......... .......... .......... .......... .......... 5101 .......... .......... .......... .......... .......... .......... 5161 .......... .......... .......... .......... .......... .......... 5221 .......... .......... .......... .......... .......... .......... 5281 .......... .......... .......... .......... .......... .......... 5341 .......... .......... .......... .......... .......... .......... 5401 .......... .......... .......... .......... .......... .......... 5461 .......... .......... .......... .......... .......... .......... 5521 .......... .......... .......... .......... .......... .......... 5581 .......... .......... .......... .......... .......... .......... 5641 .......... .......... .......... .......... .......... .......... 5701 .......... .......... .......... .......... .......... .......... 5761 .......... .......... .......... .......... .......... .......... 5821 .......... .......... .......... .......... .......... .......... 5881 .......... .......... .......... .......... .......... .......... 5941 .......... .......... .......... .......... .......... .......... 6001 .......... .......... .......... .......... .......... .......... 6061 .......... .......... .......... .......... .......... .......... 6121 .......... .......... .......... .......... .......... .......... 6181 .......... .......... .......... .......... .......... .......... 6241 .......... .......... .......... .......... .......... .......... 6301 .......... .......... .......... .......... .......... .......... 6361 .......... .......... .......... .......... .......... .......... 6421 .......... .......... .......... .......... .......... .......... 6481 .......... .......... .......... .......... .......... .......... 6541 .......... .......... .......... .......... .......... .......... 6601 .......... .......... .......... .......... .......... .......... 6661 .......... .......... .......... .......... .......... .......... 6721 .......... .......... .......... .......... .......... .......... 6781 .......... .......... .......... .......... .......... .......... 6841 .......... .......... .......... .......... .......... .......... 6901 .......... .......... .......... .......... .......... .......... 6961 .......... .......... .......... .......... .......... .......... 7021 .......... .......... .......... .......... .......... .......... 7081 .......... .......... .......... .......... .......... .......... 7141 .......... .......... .......... .......... .......... .......... 7201 .......... .......... .......... .......... .......... .......... 7261 .......... .......... .......... .......... .......... .......... 7321 .......... .......... .......... .......... .......... .......... 7381 .......... .......... .......... .......... .......... .......... 7441 .......... .......... .......... .......... .......... .......... 7501 .......... .......... .......... .......... .......... .......... 7561 .......... .......... .......... .......... .......... .......... 7621 .......... .......... .......... .......... .......... .......... 7681 .......... .......... .......... .......... .......... .......... 7741 .......... .......... .......... .......... .......... .......... 7801 .......... .......... .......... .......... .......... .......... 7861 .......... .......... .......... .......... .......... .......... 7921 .......... .......... .......... .......... .......... .......... 7981 .......... .......... .......... .......... .......... .......... 8041 .......... .......... .......... .......... .......... .......... 8101 .......... .......... .......... .......... .......... .......... 8161 .......... .......... .......... .......... .......... .......... 8221 .......... .......... .......... .......... .......... .......... 8281 .......... .......... .......... .......... .......... .......... 8341 .......... .......... .......... .......... .......... .......... 8401 .......... .......... .......... .......... .......... .......... 8461 .......... .......... .......... .......... .......... .......... 8521 .......... .......... .......... .......... .......... .......... 8581 .......... .......... .......... .......... .......... .......... 8641 .......... .......... .......... .......... .......... .......... 8701 .......... .......... .......... .......... .......... .......... 8761 .......... .......... .......... .......... .......... .......... 8821 .......... .......... .......... .......... .......... .......... 8881 .......... .......... .......... .......... .......... .......... 8941 .......... .......... .......... .......... .......... .......... 9001 .......... .......... .......... .......... .......... .......... 9061 .......... .......... .......... .......... .......... .......... 9121 .......... .......... .......... .......... .......... .......... 9181 .......... .......... .......... .......... .......... .......... 9241 .......... .......... .......... .......... .......... .......... 9301 .......... .......... .......... .......... .......... .......... 9361 .......... .......... .......... .......... .......... .......... 9421 .......... .......... .......... .......... .......... .......... 9481 .......... .......... .......... .......... .......... .......... 9541 .......... .......... .......... .......... .......... .......... 9601 .......... .......... .......... .......... .......... .......... 9661 .......... .......... .......... .......... .......... .......... 9721 .......... .......... .......... .......... .......... .......... 9781 .......... .......... .......... .......... .......... .......... 9841 .......... .......... .......... .......... .......... .......... 9901 .......... .......... .......... .......... .......... .......... 9961 .......... .......... .......... .......... .......... .......... 10021 .......... .......... .......... .......... .......... .......... 10081 .......... .......... .......... .......... .......... .......... 10141 .......... .......... .......... .......... .......... .......... 10201 .......... .......... .......... .......... .......... .......... 10261 .......... .......... .......... .......... .......... .......... 10321 .......... .......... .......... .......... .......... .......... 10381 .......... .......... .......... .......... .......... .......... 10441 .......... .......... .......... .......... .......... .......... 10501 .......... .......... .......... .......... .......... .......... 10561 .......... .......... .......... .......... .......... .......... 10621 .......... .......... .......... .......... .......... .......... 10681 .......... .......... .......... .......... .......... .......... 10741 .......... .......... .......... ||||| // LOCUS mt.B.lance 10775 bp RNA RNA 03-JUL-1998 DEFINITION Mitochondrion Branchiostoma lanceolatum.; 12S ribosomal RNA; 12S rRNA gene; 16S ribosomal RNA; 16S rRNA gene; ATPase 6 gene; ATPase 8 gene; COII gene; COIII gene; cytb gene; cytochrome b; cytochrome c oxidase subunit II; cytochrome c oxidase subunit III; NADH dehydrogenase subunit 2; NADH dehydrogenase subunit 3; NADH dehydrogenase subunit 4; NADH dehydrogenase subunit 4L; NADH dehydrogenase subunit 5; NADH dehydrogenase subunit 6; NADH2 gene; NADH3 gene; NADH4 gene; NADH4L gene; NADH5 gene; NADH6 gene; tRNA-Ala gene; tRNA-Arg gene; tRNA-Asn gene; tRNA-Asp gene; tRNA-Cys gene; tRNA-Gln gene; tRNA-Glu gene; tRNA-Gly gene; tRNA-His gene; tRNA-Ile gene; tRNA-Leu gene; tRNA-Lys gene; tRNA-Met gene; tRNA-Phe gene; tRNA-Pro gene; tRNA-Ser gene; tRNA-Thr gene; tRNA-Trp gene; tRNA-Tyr gene; tRNA-Val gene. ACCESSION Y16474 KEYWORDS 12S ribosomal RNA; 12S rRNA gene; 16S ribosomal RNA; 16S rRNA gene; ATPase 6 gene; ATPase 8 gene; COII gene; COIII gene; cytb gene; cytochrome b; cytochrome c oxidase subunit II; cytochrome c oxidase subunit III; NADH dehydrogenase subunit 2; NADH dehydrogenase subunit 3; NADH dehydrogenase subunit 4; NADH dehydrogenase subunit 4L; NADH dehydrogenase subunit 5; NADH dehydrogenase subunit 6; NADH2 gene; NADH3 gene; NADH4 gene; NADH4L gene; NADH5 gene; NADH6 gene; tRNA-Ala gene; tRNA-Arg gene; tRNA-Asn gene; tRNA-Asp gene; tRNA-Cys gene; tRNA-Gln gene; tRNA-Glu gene; tRNA-Gly gene; tRNA-His gene; tRNA-Ile gene; tRNA-Leu gene; tRNA-Lys gene; tRNA-Met gene; tRNA-Phe gene; tRNA-Pro gene; tRNA-Ser gene; tRNA-Thr gene; tRNA-Trp gene; tRNA-Tyr gene; tRNA-Val gene. SOURCE Mitochondrion Branchiostoma lanceolatum. ORGANISM Mitochondrion Branchiostoma lanceolatum. REFERENCE 1 (bases 1 to 15076) AUTHORS Spruyt,N., Delarbre,C., Gachelin,G. and Laudet,V. TITLE mitochondrial genome : relations to vertebrates Complete sequence of the amphioxus (Branchiostoma lanceolatum) JOURNAL Nucleic Acids Res. 26, 3279-3285 (1998) STANDARD No information REFERENCE 2 (bases 1 to 15076) AUTHORS Laudet,V. TITLE Direct Submission JOURNAL Submitted (11-FEB-1998) V. Laudet, Ecole Normale Superieure de Lyon, CNRS UMR 49, 46 Allee d'Italie, 69364 Lyon Cedex 07, FRANCE STANDARD No information COMMENTS Sequence information (bases 1 to 10775) Corresponding GenBank entry: Y16474 Related sequence: Y09524. BASE COUNT 439 a 196 c 288 g 444 t 9408 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 |~~~~~~~~| ~~~~~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~~(~~~~ 361 ~~~~~~~~~) ~|~~~~~~~~ ~~~~~~~|~~ ~~~~~~~(~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~)~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~(~~~~ 481 )~~~|~~~~~ ~~(~~~~~)~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~~~)~ 541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~uaac cCAAAG---- --------<- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------> (-guaaacuc 2041 --)------- -----uau-u uuCCUU(UU- GCAUA)AUGA |uuu-aauua gggcacuug- 2101 cuagcguu-- ---------- -------(-- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- -)-------- ---------- 2521 ----(----- )-----<--- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- -aauu>---- --(------) ---------- ---------- --agu-guua 2701 gua-AUCCCG AA-ACUAA-A CG-AUUUAUU CUA-GUC-CU AGUA------ ---------- 2761 -(-------- ---------- ---------- ---------- --aauuaau) ---------- 2821 -GACUUAA-C UA-AUCUAU( GUUGCAA-U) AUAG-UUAGA --UGAGGCU- AGAAUGG-GG 2881 GU(G-ACAU) GCU-AAUC-G C-GUUUAGUU CUAGCU-GGU UAUUC--AAG AA-AUG-AAU 2941 (-AAGA)GUU CA-gc-uuug ua----AGU-U GGC(UUAAAA 3781 GC-A)-GCCA -ucuu|g(u- aa)u|AACAG C(--GUUAUA )GC|-UUA-- -------------- -------|-- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- ---------- 4021 ---------- ---------- ---------- ---------- ---------- ---------- 4081 -------|-- ---u--uga| a--u-aa|-- --------cu ---------- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- ---------- ---------- ---------- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- --------(- 4441 ------)--- ---------- -------cuu auaga-au|- uu-uaugu-- ---------- 4501 ---------- ---------- (uaaa---)< -augcguagg uu-------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ------->-- ---------- -|-------| -aacuaacuc uuaacac-ag 4681 au|GUAAGUA -AUUU-UAC- u--------- (-cuuug--- ---------- ---------- 4741 ---------- -----)---- ------|uau u-uu---guu cug-gauaaa g--------- 4801 ---------- ---------- ---------- --)------- ---------- ---------- 4861 ---aauuaa- ---ug----- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ---------- ---------- 5221 ---------- ---------- ---------- ---------- ---------- ---------- 5281 ---------- ---------- ---------- ---------- ---------- ---------- 5341 ---------- ---------- ---------- ---------- ---------- ---------- 5401 ---------- ---------- ---------- ---------- ---------- ---------- 5461 ---------- ---------- ---------- ---------- ---------- ---------- 5521 ---------- ---------- ---------- ---------- ---------- ---------- 5581 ---------- ---------- ---------- ---------- ---------- ---------- 5641 ---------- ---------- ---------- ---------- ---------- ---------- 5701 ---------- ---------- ---------- ---------- ---------- ---------- 5761 ---------- ---------- ---------- ---------- ---------- ---------- 5821 ---------- ---------- ---------- ---------- ---------- ---------- 5881 ---------- ---------- ---------- ---------- ---------- ---------- 5941 ---------- ---------- ---------- ---------- ---------- ---------- 6001 ---------- ---------- ---------- ---------- ---------- ---------- 6061 ---------- ---------- ---------- ---------- ---------- ---------- 6121 ---------- ---------- ---------- ---------- ---------- ---------- 6181 ---------- ---------- ---------- ---------- ---------- ---------- 6241 ---------- ---------- ---------- ---------- ---------- ---------- 6301 ---------- ---------- ---------- ---------- ---------- ---------- 6361 ---------- ---------- ---------- ---------- ---------- ---------- 6421 ---------- ---------- ---------- ---------- ---------- ---------- 6481 --ugaagcu- -(-a-aca)g g|agagu--- ----(gua-- ------)--- ----auuga| 6541 |----guu-a cauaauUAGG -GGGA-AGGA ACUCGGCAAA ---------- ----(----- 6601 )--------- ---|------ ---------- -----(---- ---)<----- ---------- 6661 ---------- ---------- ---------- ---------- ---------- ---------- 6721 ---------- ---------- ---------- ---------- --->------ ---------- 6781 ----|-(--- )--------c agGAAGCU|C GC---CUG-U UU(AACAA)A AA-CAUC-GC 6841 CUUUAG|--- ---------- ---------- (-acua---- ------)--- ---------- 6901 ------AUA- UUA-AAGGUC UGGUCU<--- ---------- ---------- ---------- 6961 ---------- ---------- -------->G CC-CG-GU|G -U-------- ---------- 7021 ---------- --(------- ---------- ---------- ---------- ---------- 7081 ---------- ---------- ---------a auu)------ ---------- ---------| 7141 ---A-UU-AA C-|GG-C|-C -GCGGU-(AU -UCUG)ACUG UG|C(AAA)- GG-UAGCAUA 7201 AUC-AC-U-U |GCCCUU(-U AAAU-)GGGG GA|AU-GUAU GAAUGAUUAG A-CGAGGUUU 7261 CG-------- ---------- -------ACU GUCUUCCCCC UAAA-AA-C- -----ugaga 7321 uu|u|cagUG UC-UG(U-GA AAAUG)CGGG CAU----GGC UGUAAUGGAC GAGAAG-ACC 7381 CUGUUG-|-A GCUUG--AAG Ac|--uacau au---ua--| <--------- ---------- 7441 ---------- ---------- --->------ ---------- ---------- ---------- 7501 ---------- ---------- ---------- -- --(------- -)-------- ---------- 7681 ---------- -------|-- ---------- ---------- ---------- ---------- 7741 -----(---- ----)----- ---------- ---------- ---------- --------<- 7801 ---------- ---------- ---------- ---------- ---------- ---------- 7861 ---------- ---------- ---------- ---------- ---------- ---------- 7921 ---------- ---------- ---------- ---------- ---------- ---------- 7981 ---------- ---------- ---------- ---------- ---------- ---------- 8041 ---------- ---------- ---------- ---------- ---------- ---------- 8101 ---------- ---------- ----->---- --auu-a-aa -cg---G-UC UUUUGGCUG( 8161 GGG)UG-GC- A|AGCAAA(- --------GG AAUUA-AGC- )UUUG-AU|A |U|uaa--|< 8221 auuuacau-- ---------- ---------- ---------- ---------- ---------- 8281 ---------- ---------- ---------- ---------- ---------- ---------- 8341 ---------- ---------- ---------- ---------- ---------- ->-------- 8401 ---|------ ------<--- ---------- ---------- ---------- ---------- 8461 ---------- ---------- ---------- ---------- ---------- ---------- 8521 ---------- ---------- ---------- ---------- ---------- ---------- 8581 ---------- ---------- ---------- ---------- ---------- ---------- 8641 ---------- ---------> (--------- )--------- ---------- ---------- 8701 ---------- ---------- ---------- -------|-- (-|-----)- ---------- 8761 ---------- uuuua-ggc( uguuuau--- )gccaa-gga auau------ ---------- 8821 ---------- ---------- ---------- ---------- ---------- ---------u 8881 a|---au-ac aGAUC-CGC- ---------- ---------- ---(------ ---------- 8941 ---------- ---------- ---------- ---------- -------uaa ga)--|---- 9001 GCGAUUAAU- |AGA-UAAAG UUACCA|CAG G|GAUAACAG |C-GUA-A-U CCUUUUUGAG 9061 AG(C--CCAU )AUUGACAAA --AGGGUUUG CG-ACCUCGA UGUU|GG--A U|C|AAGAU| 9121 -U-CC-UAAU GG-UG(--UA -GC)AGCUAU UAUG-GGU|U UGCC(UGUUC )GGCGA-UUA 9181 A--AAUCUU- --ACGUGAUC UGAGUACAGA CC|GU-C(GU AA)GACAGGU UAGAUUCUAU 9241 CC|UUA---- --|-|<---- ---------- ---------- ---------- -----cauu- 9301 >--------- ---------- --c-aca-ua uu--(UAGU- AC(-GAAA)G GACC-)aaug 9361 ---gu-<--- ---------- ---------- -------->g uguaauu--u uaag------ 9421 -|-------- (-----)<-- ---------- ---------- ---------- ---------- 9481 ---------- ---------- ---------- ---------- ---------- ---guuuu-> 9541 ---------- --------uu uaaa-uuaua ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9601 ~~~~~~~~~~ ~~~~~~~~~~ (~~~~~~~~~ ~~~~~)~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9661 ~~~~~~~~~~ ~~~~~~~<~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~>~~| ~~~~~~(~~~ )~~~~~~~~~ ~~~~~~~|~~ 9961 ~~~(~~~~~~ ~~~)~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10021 ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~~~ 10141 ~~~~~~~~~~ ~~~~~~~~~~ ~)~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10201 ~~~~~~~~~~ ~|~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10321 ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ||||| // LOCUS (10)-VERTE 10775 bp RNA RNA 09-JAN-1999 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 10775) Corresponding GenBank entry: DIVIDER BASE COUNT 0 a 0 c 0 g 0 t 10775 others ORIGIN 1 |......... .......... .......... .......... .......... .......... 61 .......... .......... .......... .......... .......... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......... .......... .......... .......... 241 .......... .......... .......... .......... .......... .......... 301 .......... .......... .......... .......... .......... .......... 361 .......... .......... .......... .......... .......... .......... 421 .......... .......... .......... .......... .......... .......... 481 .......... .......... .......... .......... .......... .......... 541 .......... .......... .......... .......... .......... .......... 601 .......... .......... .......... .......... .......... .......... 661 .......... .......... .......... .......... .......... .......... 721 .......... .......... .......... .......... .......... .......... 781 .......... .......... .......... .......... .......... .......... 841 .......... .......... .......... .......... .......... .......... 901 .......... .......... .......... .......... .......... .......... 961 .......... .......... .......... .......... .......... .......... 1021 .......... .......... .......... .......... .......... .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .......... .......... .......... .......... .......... 1201 .......... .......... .......... .......... .......... .......... 1261 .......... .......... .......... .......... .......... .......... 1321 .......... .......... .......... .......... .......... .......... 1381 .......... .......... .......... .......... .......... .......... 1441 .......... .......... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... .......... .......... .......... .......... .......... 1621 .......... .......... .......... .......... .......... .......... 1681 .......... .......... .......... .......... .......... .......... 1741 .......... .......... .......... .......... .......... .......... 1801 .......... .......... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .......... .......... 1921 .......... .......... .......... .......... .......... .......... 1981 .......... .......... .......... .......... .......... .......... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... .......... .......... .......... .......... .......... 2161 .......... .......... .......... .......... .......... .......... 2221 .......... .......... .......... .......... .......... .......... 2281 .......... .......... .......... .......... .......... .......... 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... .......... 2701 .......... .......... .......... .......... .......... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... .......... 2881 .......... .......... .......... .......... .......... .......... 2941 .......... .......... .......... .......... .......... .......... 3001 .......... .......... .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .......... .......... 3181 .......... .......... .......... .......... .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .......... .......... .......... 3361 .......... .......... .......... .......... .......... .......... 3421 .......... .......... .......... .......... .......... .......... 3481 .......... .......... .......... .......... .......... .......... 3541 .......... .......... .......... .......... .......... .......... 3601 .......... .......... .......... .......... .......... .......... 3661 .......... .......... .......... .......... .......... .......... 3721 .......... .......... .......... .......... .......... .......... 3781 .....-.... .......... .......... .......... .......... .......... 3841 .......... .......... .......... .......... .......... .......... 3901 .......... .......... .......... .......... .......... .......... 3961 .......... .......... .......... .......... .......... .......... 4021 .......... .......... .......... .......... .......... .......... 4081 .......... .......... .......... .......... .......... .......... 4141 .......... .......... .......... .......... .......... .......... 4201 .......... .......... .......... .......... .......... .......... 4261 .......... .......... .......... .......... .......... .......... 4321 .......... .......... .......... .......... .......... .......... 4381 .......... .......... .......... .......... .......... .......... 4441 .......... .......... .......... .......... .......... .......... 4501 .......... .......... .......... .......... .......... .......... 4561 .......... .......... .......... .......... .......... .......... 4621 .......... .......... .......... .......... .......... .......... 4681 .......... .......... .......... .......... .......... .......... 4741 .......... .......... .......... .......... .......... .......... 4801 .......... .......... .......... ..)....... .......... .......... 4861 .......... .......... .......... .......... .......... .......... 4921 .......... .......... .......... .......... .......... .......... 4981 .......... .......... .......... .......... .......... .......... 5041 .......... .......... .......... .......... .......... .......... 5101 .......... .......... .......... .......... .......... .......... 5161 .......... .......... .......... .......... .......... .......... 5221 .......... .......... .......... .......... .......... .......... 5281 .......... .......... .......... .......... .......... .......... 5341 .......... .......... .......... .......... .......... .......... 5401 .......... .......... .......... .......... .......... .......... 5461 .......... .......... .......... .......... .......... .......... 5521 .......... .......... .......... .......... .......... .......... 5581 .......... .......... .......... .......... .......... .......... 5641 .......... .......... .......... .......... .......... .......... 5701 .......... .......... .......... .......... .......... .......... 5761 .......... .......... .......... .......... .......... .......... 5821 .......... .......... .......... .......... .......... .......... 5881 .......... .......... .......... .......... .......... .......... 5941 .......... .......... .......... .......... .......... .......... 6001 .......... .......... .......... .......... .......... .......... 6061 .......... .......... .......... .......... .......... .......... 6121 .......... .......... .......... .......... .......... .......... 6181 .......... .......... .......... .......... .......... .......... 6241 .......... .......... .......... .......... .......... .......... 6301 .......... .......... .......... .......... .......... .......... 6361 .......... .......... .......... .......... .......... .......... 6421 .......... .......... .......... .......... .......... .......... 6481 .......... .......... .......... .......... .......... .......... 6541 .......... .......... .......... .......... .......... .......... 6601 .......... .......... .......... .......... .......... .......... 6661 .......... .......... .......... .......... .......... .......... 6721 .......... .......... .......... .......... .......... .......... 6781 .......... .......... .......... .......... .......... .......... 6841 .......... .......... .......... .......... .......... .......... 6901 .......... .......... .......... .......... .......... .......... 6961 .......... .......... .......... .......... .......... .......... 7021 .......... .......... .......... .......... .......... .......... 7081 .......... .......... .......... .......... .......... .......... 7141 .......... .......... .......... .......... .......... .......... 7201 .......... .......... .......... .......... .......... .......... 7261 .......... .......... .......... .......... .......... .......... 7321 .......... .......... .......... .......... .......... .......... 7381 .......... .......... .......... .......... .......... .......... 7441 .......... .......... .......... .......... .......... .......... 7501 .......... .......... .......... .......... .......... .......... 7561 .......... .......... .......... .......... .......... .......... 7621 .......... .......... .......... .......... .......... .......... 7681 .......... .......... .......... .......... .......... .......... 7741 .......... .......... .......... .......... .......... .......... 7801 .......... .......... .......... .......... .......... .......... 7861 .......... .......... .......... .......... .......... .......... 7921 .......... .......... .......... .......... .......... .......... 7981 .......... .......... .......... .......... .......... .......... 8041 .......... .......... .......... .......... .......... .......... 8101 .......... .......... .......... .......... .......... .......... 8161 .......... .......... .......... .......... .......... .......... 8221 .......... .......... .......... .......... .......... .......... 8281 .......... .......... .......... .......... .......... .......... 8341 .......... .......... .......... .......... .......... .......... 8401 .......... .......... .......... .......... .......... .......... 8461 .......... .......... .......... .......... .......... .......... 8521 .......... .......... .......... .......... .......... .......... 8581 .......... .......... .......... .......... .......... .......... 8641 .......... .......... .......... .......... .......... .......... 8701 .......... .......... .......... .......... .......... .......... 8761 .......... .......... .......... .......... .......... .......... 8821 .......... .......... .......... .......... .......... .......... 8881 .......... .......... .......... .......... .......... .......... 8941 .......... .......... .......... .......... .......... .......... 9001 .......... .......... .......... .......... .......... .......... 9061 .......... .......... .......... .......... .......... .......... 9121 .......... .......... .......... .......... .......... .......... 9181 .......... .......... .......... .......... .......... .......... 9241 .......... .......... .......... .......... .......... .......... 9301 .......... .......... .......... .......... .......... .......... 9361 .......... .......... .......... .......... .......... .......... 9421 .......... .......... .......... .......... .......... .......... 9481 .......... .......... .......... .......... .......... .......... 9541 .......... .......... .......... .......... .......... .......... 9601 .......... .......... .......... .......... .......... .......... 9661 .......... .......... .......... .......... .......... .......... 9721 .......... .......... .......... .......... .......... .......... 9781 .......... .......... .......... .......... .......... .......... 9841 .......... .......... .......... .......... .......... .......... 9901 .......... .......... .......... .......... .......... .......... 9961 .......... .......... .......... .......... .......... .......... 10021 .......... .......... .......... .......... .......... .......... 10081 .......... .......... .......... .......... .......... .......... 10141 .......... .......... .......... .......... .......... .......... 10201 .......... .......... .......... .......... .......... .......... 10261 .......... .......... .......... .......... .......... .......... 10321 .......... .......... .......... .......... .......... .......... 10381 .......... .......... .......... .......... .......... .......... 10441 .......... .......... .......... .......... .......... .......... 10501 .......... .......... .......... .......... .......... .......... 10561 .......... .......... .......... .......... .......... .......... 10621 .......... .......... .......... .......... .......... .......... 10681 .......... .......... .......... .......... .......... .......... 10741 .......... .......... .......... ||||| // LOCUS mt.N.cryso 10775 bp RNA RNA 02-JUN-1998 DEFINITION Mitochondrion Notemigonus crysoleucas.; . ACCESSION AF0384 7 KEYWORDS . SOURCE Mitochondrion Notemigonus crysoleucas. ORGANISM Mitochondrion Notemigonus crysoleucas. REFERENCE 1 (bases 1 to 1758) AUTHORS Simons,A.M. and Mayden,R.L. TITLE Phylogenetic Relationships of the Western North American Phoxinins (Actinopterygii: Cyprinidae) as Inferred from Mitochondrial 12S and 16S Ribosomal RNA Sequences JOURNAL Mol. Phylogenet. Evol. (1998) In press STANDARD No information REFERENCE 2 (bases 1 to 1758) AUTHORS Simons,A.M. and Mayden,R.L. TITLE Direct Submission JOURNAL Submitted (15-DEC-1997) Department of Biological Sciences, The University of Alabama, Box 870344, Tuscaloosa, AL 35487-0344, USA STANDARD No information COMMENTS Sequence information (bases 1 to 10775) Corresponding GenBank entry: AF038487 BASE COUNT 584 a 384 c 367 g 370 t 9070 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~ug caaauuggau ca-cccugaG C--------- ----caacca 301 |gcu--agc| uu-------- -|-------- ---------- ---------| -----(---- 361 ---------) -|-------- -------|-- -------(-- ---------- ---------- 421 -------)-- ---------- ---------- ---------- ---------- -----(---- 481 )---|----- --(-----)- ---------- ---------- ---------- -(------)- 541 ---------- ---------- ---- ---------- |------aac 841 uAA(ACCA)U Uuu------- ---------- ---------- ---------- --------uu 901 ------(--- --)------- |ugc-cuaA- -GUAC-G(-G GAGA)CGGAA -aaggu---- 961 -------<-- --ucaacuu- ---------- ---------- ---------- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- --->------ 1201 ---------- ---------- ---------- ---------< ---------- ---------- 1261 ---------- ---------- ---------> (------)-- ---------- ---|-(---) 1321 -------(-- -----)---- ---------- ---------- ---------- --<------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- >--------- ------(--- ---------- 1561 -------)-- ---------- ---------- -(-------) ---------- ---------- 1621 ---------- --AAAGCAAU AGAG-AA--- ---AGUACC( -GCAA-)GG- ---AAA-GC- 1681 ugaaagagaa augaaauaac ccaua----- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- -----uaa-G C-AAAA ACAAAG---- --------<- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------> (--acuaaac 2041 --)------- -----CUU-G U-CCUU(UU- GCAUC)AUGA |UUU-AGCCA GUacc--cu- 2101 caagcaaag- ---------- -------(-- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- -)-------- ---------- 2521 ----(----- )-----<--- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- agac->---- --(------) ---------- ---------- --uuu-guuu 2701 gac-gcCCCg AA-ACCAG-G UG-AGCUACC CCG-AGA-CA GCCU------ ---------- 2761 -(-------- ---------- ---------- --------au guuaaucua) ---------- 2821 -GGGCCAA-C CC-GUCUCU( GUGGCAA-A) AGAG-UGGGA --AGAGCUC- CGGGUAG-AA 2881 GU(G-ACAG) ACC-UACC-G A-ACCUGGUG AUAGCU-GGU UGCCU--GAG AA-AUG-GAU 2941 (-AGAA)GUU CA-GC-CUCG UAuu<----- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ------->-- ---|------ 3061 -|------|- ---------- ---------- --------(- --------)< accccaaacc 3121 aaag-----a acauaucacu aagguaauu- ---------- ---------- ---------- 3181 ----agagau ac-------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---->----- ---------- 3301 ---------- ---------- ----|----- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ------AU-A -CGAG-AGUU AGUUA--AA- GG-GG(-GUA 3481 CAG)CCCCUU UA-AC----- -aAAGG(AUA -CAA)CCU-u uacag-g-ag -ga-UAA--- 3541 --agaucaua auauaua-a- aacaua---- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ------cugu u<-------- ---------- ---------- 3721 ---------- ---------- ---------- ---------- -->CUAGU-G GGC(CUAAAA 3781 GC-A)-GCCA -CCUA|-(a- ac)a|GAAAG C(--GUUAAA )GC|-UCAg- acag--<--- 3841 --aaaaaagu uuauuauacc gauaaaaaa- ---------- ---------- ---------- 3901 ->-------- -------|-- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- ---------- 4021 ---------- ---------- ---------- ---------- ---------- ---------- 4081 -------|uc uuac--ucc| c--c-ua|-- ---------- ---------- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- ---------- ---------- ---------- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- -----auuau auCAG-GC|- CA-GCCCAUG ---------- 4501 ---------- ---------- -ccaa----- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ------->-- ---------- ---------| CAUGGGAGAG AUUAUGC-UA 4681 AA|AUGAGUA -ACAA-GAA- ga-------- (-ccugcucu ---------- ---------- 4741 ---------- -----)---- ---uc-|ucc ----ca-GCA CAA--gugua a|----acca 4801 gauc----gg ---------- ----(--aca aa)c-c|--g cuggaa---- ---------- 4861 ---cuuaa-- -cga------ ---------- -------(-- ---------- ------)<-- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 >--------- ---------- ---------- ----(----- ---------- ---------- 5041 ---------- ---------- ----)----- |-----|--- ---------- |--<------ 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ---------- ---------- 5221 ---------- ---------- ---------- ---------- ---------- ---------- 5281 ---------- ---------- ---------- ---------- ---------- ---------- 5341 ---------- ---------- ---------- ---------- ---------- ---------- 5401 ---------- ---------- ------->-- ---------- ---------- ---------- 5461 -----(---- ------)--- ---|------ --------|- ---------- -(-----)-- 5521 |--------- ---------- ---------- -----(---- )--------- ---------- 5581 --<------- ---------- ---------- ---------- ---------- ---------- 5641 ---------- ---------- ------->-- ---------- ---------- ---<------ 5701 ---------- acccaaccca agaggguaau gugaauaaua uuagaccuca ggaaaaacuc 5761 acaucugaau aa-------- ---------- ---------- ---------- ---------- 5821 ---------- ---------- ---------- ---------- ---------- ---------- 5881 ---------- ---------- ---------- ---------- ---------- ---------- 5941 ---------- ---------- ---------- ---------- ---------- ---------- 6001 ---------- ---------- ---------- ---------- ---------- ---------- 6061 ---------- ---------- ---------- ---------- ---------- ---------- 6121 ---------- ---------- ---------- ---------- ---------- ---------- 6181 ---------- ---------- ---------- ---------- ---------- ---------- 6241 ---------- ---------- ---------- ---------- ---------- ---------- 6301 ---------- ---------- ---------- ---------- ---------- ---------- 6361 ---------- ---------- ---------- ---------- ---------- ---------- 6421 ---------- ---------- ------>--- ---------- ---------- --ucgu-|-- 6481 ---uAACCC- -(UACACU)G G|CGUGC--- -----uacuu uaag------ -----ggaa| 6541 |---AGAC-U A--AAAGAAG -GGGA-AGGA ACUCGGCAAA ---------- ---------- 6601 ---------- ---------- ---------- ---------- ---------- ---------- 6661 ---------- ---------- ---------- ---------- ---------- ---------- 6721 ---------- ---------- ---------- ---------- ---------- ---------- 6781 ------(--- )--------c acAAGCCU|C GC---CUG-U UU(ACCAA)A AA-CAUC-GC 6841 CUCCUG|C-- ---------- ---------- (aacuggauu ga----)--- ---------- 6901 ------GUA- UAG-GAGGUC CAGCCU<--- ---------- ---------- ---------- 6961 ---------- ---------- -------->G CC-CA-GU|G AC-------- ---------- 7021 ---------- --(------- ---------- ---------- ---------- ---------- 7081 ---------- ---------- --------ua cgg)------ ---------- ---------| 7141 ---GUUC-AA C-|GG-C|-C -GCGGU-(AU -UUUG)ACCG UG|C(AAA)- GG-UAGCGCA 7201 AUC-AC-U-U |GUCUCU(-U AAAU-)AGAG AC|CU-GUAU GAAUGGCUAG A-CGAGGGCU 7261 UA-------- ---------- -------ACU GUCUCCCCCC UCCA-GU-CA ----GUGAAA 7321 UU|G|AUCUA UC-CG(U-GC AGAAG)CGGG UUU----AAC UAUACAAGAC GAGAAG-ACC 7381 CUUUGG-|-A GCUUA--AGG UA|-caaagu uca--a---| <--------- ---------- 7441 ---------- ---------- --->------ ---------- ---------- ---------- 7501 ---------- ---------- ---------- --<------- ------ccac guuaa-acga 7561 cu-acacaaa aagcaagaac uuaguggcga g--------- ---------- ---------- 7621 ---------- ---------- ---------- ---------- ---------- ---------- 7681 ---------- ---------- ---------- ---------- ---------- ---------- 7741 ---------- ---------- ---------- ---------- ---------- ---------- 7801 ---------- ---------- ---------- ---------- ---------- ---------- 7861 ---------- ---------- ---------- ---------- ---------- ---------- 7921 ---------- ---------- ---------- ---------- ---------- ---------- 7981 ---------- ---------- ---------- ---------- ---------- ---------- 8041 ---------- ---------- ---------- ---------- ---------- ---------- 8101 ---------- ---------- ----->---- ----u-gaaa uuu---U-AC CUUCGGUUG( 8161 GGG)CG-AC- C|ACGGAG(- --------GA GAAAAGAGC- )CUCC-GA|G |u|gg---|< 8221 ---------- ---------- ---------- ---------- ---------- ---------- 8281 ---------- ---------- ---------- ---------- ---------- ------acug 8341 ggccaa-a-- uccca----- ---------- ---------- ---------- ---------- 8401 ---------- ---------- ---------- ---------- ---------- ---------- 8461 ---------- ---------- ---------- ---------- ---------- ---------- 8521 ---------- ---------- ---------- ---------- ---------- ---------- 8581 ---------- ---------- ---------- ---------- ---------- ---------- 8641 ---------- ---------- ---------- ---------- ---------- ---------- 8701 ---------- ---------- ---------- ---------- --|------- ---------- 8761 --------aa gccaa-uag( -auacau--- )cuaua-agc -cgcagaaca ucug------ 8821 ---------- ---------- ---------- ---------- ---------- --------ac 8881 c|---aauaa UGAUC-cggc u--------- ---------- ---(------ ---------- 8941 ---------- ---------- ---------- ---------- --------ga aa)--|--ag 9001 gc-AUCAAC- |GAA-CCAAG UUACCC|UAG G|GAUAACAG |C-GCA-A-U CCUCUCCCAG 9061 AG(U--CCAU )AUCGACGAG --GGGGUUUA CG-ACCUCGA UGUU|GG--A U|C|AGGAC| 9121 AU-CC-UAAU GG-UG(--CA -GC)CGCUAU UAAG-GGU|U CGUU(UGUUC )AACGA-UUA 9181 A--AGUCCU- --ACGUGAUC UGAGUUCAGA CC|GG-A(GC AA)UCCAGGU CAGUUUCUAU 9241 CU|GUA---- --|-|<---- ---------- ---------- ---------- -----gcgc- 9301 >--------- ---------- -uA-CUU-UU CC--(UAGU- AC(-GAAA)G GAUC-)GGAA 9361 A--AG-- ggggccu-au ac-------- 9421 -|-------- (-----) 9541 ---------- ---------- gcau-gcccc acc------- ---------- -------ccu 9601 ---------- ---aauugau (gaaaac--a aauaa)a-uu -aa-guaaag g--------- 9661 ---------- -------<-- ----gaggg- ---------- ---------- ---------- 9721 ---------- ---------- ---------- ---------- ---------- ---------- 9781 ---------- ---------- ---------- ---------- ---------- ---------- 9841 ---------- ---------- ---------- ---------- ---------- ---------- 9901 -------cua aaaccccuac c----->--| ------(--- )--------- -------|gu 9961 cc-(gaaaua a--)-ggaca ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10021 ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~~~ 10141 ~~~~~~~~~~ ~~~~~~~~~~ ~)~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10201 ~~~~~~~~~~ ~|~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10321 ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ||||| // LOCUS (11)-AGNAT 10775 bp RNA RNA 09-JAN-1999 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 10775) Corresponding GenBank entry: DIVIDER BASE COUNT 0 a 0 c 0 g 0 t 10775 others ORIGIN 1 |......... .......... .......... .......... .......... .......... 61 .......... .......... .......... .......... .......... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......... .......... .......... .......... 241 .......... .......... .......... .......... .......... .......... 301 .......... .......... .......... .......... .......... .......... 361 .......... .......... .......... .......... .......... .......... 421 .......... .......... .......... .......... .......... .......... 481 .......... .......... .......... .......... .......... .......... 541 .......... .......... .......... .......... .......... .......... 601 .......... .......... .......... .......... .......... .......... 661 .......... .......... .......... .......... .......... .......... 721 .......... .......... .......... .......... .......... .......... 781 .......... .......... .......... .......... .......... .......... 841 .......... .......... .......... .......... .......... .......... 901 .......... .......... .......... .......... .......... .......... 961 .......... .......... .......... .......... .......... .......... 1021 .......... .......... .......... .......... .......... .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .......... .......... .......... .......... .......... 1201 .......... .......... .......... .......... .......... .......... 1261 .......... .......... .......... .......... .......... .......... 1321 .......... .......... .......... .......... .......... .......... 1381 .......... .......... .......... .......... .......... .......... 1441 .......... .......... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... .......... .......... .......... .......... .......... 1621 .......... .......... .......... .......... .......... .......... 1681 .......... .......... .......... .......... .......... .......... 1741 .......... .......... .......... .......... .......... .......... 1801 .......... .......... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .......... .......... 1921 .......... .......... .......... .......... .......... .......... 1981 .......... .......... .......... .......... .......... .......... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... .......... .......... .......... .......... .......... 2161 .......... .......... .......... .......... .......... .......... 2221 .......... .......... .......... .......... .......... .......... 2281 .......... .......... .......... .......... .......... .......... 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... .......... 2701 .......... .......... .......... .......... .......... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... .......... 2881 .......... .......... .......... .......... .......... .......... 2941 .......... .......... .......... .......... .......... .......... 3001 .......... .......... .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .......... .......... 3181 .......... .......... .......... .......... .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .......... .......... .......... 3361 .......... .......... .......... .......... .......... .......... 3421 .......... .......... .......... .......... .......... .......... 3481 .......... .......... .......... .......... .......... .......... 3541 .......... .......... .......... .......... .......... .......... 3601 .......... .......... .......... .......... .......... .......... 3661 .......... .......... .......... .......... .......... .......... 3721 .......... .......... .......... .......... .......... .......... 3781 .....-.... .......... .......... .......... .......... .......... 3841 .......... .......... .......... .......... .......... .......... 3901 .......... .......... .......... .......... .......... .......... 3961 .......... .......... .......... .......... .......... .......... 4021 .......... .......... .......... .......... .......... .......... 4081 .......... .......... .......... .......... .......... .......... 4141 .......... .......... .......... .......... .......... .......... 4201 .......... .......... .......... .......... .......... .......... 4261 .......... .......... .......... .......... .......... .......... 4321 .......... .......... .......... .......... .......... .......... 4381 .......... .......... .......... .......... .......... .......... 4441 .......... .......... .......... .......... .......... .......... 4501 .......... .......... .......... .......... .......... .......... 4561 .......... .......... .......... .......... .......... .......... 4621 .......... .......... .......... .......... .......... .......... 4681 .......... .......... .......... .......... .......... .......... 4741 .......... .......... .......... .......... .......... .......... 4801 .......... .......... .......... ..)....... .......... .......... 4861 .......... .......... .......... .......... .......... .......... 4921 .......... .......... .......... .......... .......... .......... 4981 .......... .......... .......... .......... .......... .......... 5041 .......... .......... .......... .......... .......... .......... 5101 .......... .......... .......... .......... .......... .......... 5161 .......... .......... .......... .......... .......... .......... 5221 .......... .......... .......... .......... .......... .......... 5281 .......... .......... .......... .......... .......... .......... 5341 .......... .......... .......... .......... .......... .......... 5401 .......... .......... .......... .......... .......... .......... 5461 .......... .......... .......... .......... .......... .......... 5521 .......... .......... .......... .......... .......... .......... 5581 .......... .......... .......... .......... .......... .......... 5641 .......... .......... .......... .......... .......... .......... 5701 .......... .......... .......... .......... .......... .......... 5761 .......... .......... .......... .......... .......... .......... 5821 .......... .......... .......... .......... .......... .......... 5881 .......... .......... .......... .......... .......... .......... 5941 .......... .......... .......... .......... .......... .......... 6001 .......... .......... .......... .......... .......... .......... 6061 .......... .......... .......... .......... .......... .......... 6121 .......... .......... .......... .......... .......... .......... 6181 .......... .......... .......... .......... .......... .......... 6241 .......... .......... .......... .......... .......... .......... 6301 .......... .......... .......... .......... .......... .......... 6361 .......... .......... .......... .......... .......... .......... 6421 .......... .......... .......... .......... .......... .......... 6481 .......... .......... .......... .......... .......... .......... 6541 .......... .......... .......... .......... .......... .......... 6601 .......... .......... .......... .......... .......... .......... 6661 .......... .......... .......... .......... .......... .......... 6721 .......... .......... .......... .......... .......... .......... 6781 .......... .......... .......... .......... .......... .......... 6841 .......... .......... .......... .......... .......... .......... 6901 .......... .......... .......... .......... .......... .......... 6961 .......... .......... .......... .......... .......... .......... 7021 .......... .......... .......... .......... .......... .......... 7081 .......... .......... .......... .......... .......... .......... 7141 .......... .......... .......... .......... .......... .......... 7201 .......... .......... .......... .......... .......... .......... 7261 .......... .......... .......... .......... .......... .......... 7321 .......... .......... .......... .......... .......... .......... 7381 .......... .......... .......... .......... .......... .......... 7441 .......... .......... .......... .......... .......... .......... 7501 .......... .......... .......... .......... .......... .......... 7561 .......... .......... .......... .......... .......... .......... 7621 .......... .......... .......... .......... .......... .......... 7681 .......... .......... .......... .......... .......... .......... 7741 .......... .......... .......... .......... .......... .......... 7801 .......... .......... .......... .......... .......... .......... 7861 .......... .......... .......... .......... .......... .......... 7921 .......... .......... .......... .......... .......... .......... 7981 .......... .......... .......... .......... .......... .......... 8041 .......... .......... .......... .......... .......... .......... 8101 .......... .......... .......... .......... .......... .......... 8161 .......... .......... .......... .......... .......... .......... 8221 .......... .......... .......... .......... .......... .......... 8281 .......... .......... .......... .......... .......... .......... 8341 .......... .......... .......... .......... .......... .......... 8401 .......... .......... .......... .......... .......... .......... 8461 .......... .......... .......... .......... .......... .......... 8521 .......... .......... .......... .......... .......... .......... 8581 .......... .......... .......... .......... .......... .......... 8641 .......... .......... .......... .......... .......... .......... 8701 .......... .......... .......... .......... .......... .......... 8761 .......... .......... .......... .......... .......... .......... 8821 .......... .......... .......... .......... .......... .......... 8881 .......... .......... .......... .......... .......... .......... 8941 .......... .......... .......... .......... .......... .......... 9001 .......... .......... .......... .......... .......... .......... 9061 .......... .......... .......... .......... .......... .......... 9121 .......... .......... .......... .......... .......... .......... 9181 .......... .......... .......... .......... .......... .......... 9241 .......... .......... .......... .......... .......... .......... 9301 .......... .......... .......... .......... .......... .......... 9361 .......... .......... .......... .......... .......... .......... 9421 .......... .......... .......... .......... .......... .......... 9481 .......... .......... .......... .......... .......... .......... 9541 .......... .......... .......... .......... .......... .......... 9601 .......... .......... .......... .......... .......... .......... 9661 .......... .......... .......... .......... .......... .......... 9721 .......... .......... .......... .......... .......... .......... 9781 .......... .......... .......... .......... .......... .......... 9841 .......... .......... .......... .......... .......... .......... 9901 .......... .......... .......... .......... .......... .......... 9961 .......... .......... .......... .......... .......... .......... 10021 .......... .......... .......... .......... .......... .......... 10081 .......... .......... .......... .......... .......... .......... 10141 .......... .......... .......... .......... .......... .......... 10201 .......... .......... .......... .......... .......... .......... 10261 .......... .......... .......... .......... .......... .......... 10321 .......... .......... .......... .......... .......... .......... 10381 .......... .......... .......... .......... .......... .......... 10441 .......... .......... .......... .......... .......... .......... 10501 .......... .......... .......... .......... .......... .......... 10561 .......... .......... .......... .......... .......... .......... 10621 .......... .......... .......... .......... .......... .......... 10681 .......... .......... .......... .......... .......... .......... 10741 .......... .......... .......... ||||| // LOCUS mt.P.marin 10775 bp RNA RNA 11-JAN-191 DEFINITION Mitochondrion Petromyzon marinus. ACCESSION No information KEYWORDS No information. SOURCE Mitochondrion Petromyzon marinus. ORGANISM Mitochondrion Petromyzon marinus. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 10775) Corresponding GenBank entry: U11880 LOCUS PMU11880 16201 bp DNA Circular VRT 25-JUL-1994 DEFINITION Petromyzon marinus mitochondrion, complete genome. ACCESSION U11880 KEYWORDS . SOURCE sea lamprey ORGANISM Mitochondrion Petromyzon marinus Eukaryotae; Hyperchondria; Eukaryote crown group; Metazoa/Eumycota group; Metazoa; Eumetazoa; Bilateria; Coelomata; Deuterostomia; Chordata; Vertebrata; Petromyzontiformes; Petromyzontidae; Petromyzon. REFERENCE 1 (bases 1 to 16201) AUTHORS Lee,W.-J. and Kocher,T.D. TITLE Complete sequence of a sea lamprey (Petromyzon marinus) mitochondrial genome: A unique gene order and significance for the evolution of mitochondrial genome structure JOURNAL Unpublished STANDARD full automatic REFERENCE 2 (bases 1 to 16201) AUTHORS Lee,W.-J. TITLE Direct Submission JOURNAL Submitted (06-JUL-1994) Woo-Jai Lee, Zoology, University of New Hampshire, Spaulding Life Science Building, Durham, NH 03824, USA STANDARD full automatic COMMENT NCBI gi: 515484 FEATURES Location/Qualifiers tRNA complement(1195..1265) /product="tRNA-Pro" /anticodon=(pos:1231..1233,aa:Pro) tRNA 1276..1343 /product="tRNA-Phe" /anticodon=(pos:1309..1311,aa:Phe) rRNA 1344..2243 /product="12S ribosomal RNA" tRNA 2244..2314 /product="tRNA-Val" /anticodon=(pos:2276..2278,aa:Val) rRNA 2315..3935 /product="16S ribosomal RNA" tRNA 3936..4009 /product="tRNA-Leu" /anticodon=(pos:3971..3973,aa:Leu) /note="UUR" tRNA 5003..5071 /product="tRNA-Ile" /anticodon=(pos:5033..5035,aa:Ile) tRNA complement(5074..5144) /product="tRNA-Gln" /anticodon=(pos:5110..5112,aa:Gln) tRNA 5145..5212 /product="tRNA-Met" /anticodon=(pos:5176..5178,aa:Met) tRNA 6256..6323 /product="tRNA-Trp" /anticodon=(pos:6285..6287,aa:Trp) tRNA complement(6325..6393) /product="tRNA-Ala" /anticodon=(pos:6334..6336,aa:Ala) tRNA complement(6397..6465) /product="tRNA-Asn" /anticodon=(pos:6434..6436,aa:Asn) tRNA complement(6467..6532) /product="tRNA-Cys" /anticodon=(pos:6502..6504,aa:Cys) tRNA complement(6538..6608) /product="tRNA-Tyr" /anticodon=(pos:6574..6576,aa:Tyr) tRNA complement(8154..8224) /product="tRNA-Ser" /anticodon=(pos:8189..8191,aa:Ser) /note="UCN" tRNA 8226..8294 /product="tRNA-Asp" /anticodon=(pos:8256..8258,aa:Asp) tRNA 8996..9061 /product="tRNA-Lys" /anticodon=(pos:9024..9026,aa:Lys) tRNA 10695..10764 /product="tRNA-Gly" /anticodon=(pos:10725..10727,aa:Gly) tRNA 11120..11185 /product="tRNA-Arg" /anticodon=(pos:11150..11152,aa:Arg) tRNA 12856..12924 /product="tRNA-His" /anticodon=(pos:12886..12888,aa:His) tRNA 12925..12994 /product="tRNA-Ser" /anticodon=(pos:12952..12954,aa:Ser) /note="AGY" tRNA 12995..13066 /product="tRNA-Leu" /anticodon=(pos:13028..13030,aa:Leu) /note="CUN" D-loop 15368..15858 tRNA 15859..15930 /product="tRNA-Thr" /anticodon=(pos:15891..15893,aa:Thr) tRNA complement(15932..16002) /product="tRNA-Glu" /anticodon=(pos:15968..15970,aa:Glu) repeat_region 16003..16201 source 1..16201 /organism="Petromyzon marinus" /dev_stage="adult" /mitochondrion CDS 1..1191 /note="NCBI gi: 515485" /product="cytochrome b" /codon_start=1 /translation="MSHQPSIIRKTHPLLSLGNSMLVDLPSPANISAWWNFGSLLSLC LILQIITGLILAMHYTANTELAFSSVMHICRDVNNGWLMRNLHANGASMFFICIYAHI GRGIYYGSYLYKETWNVGVILFALTAATAFVGYVLPWGQMSFWGATVITNLISAMPYV GNDIVVWLWGGFSVSNATLTRFFTFHFILPFILAAMTMIHIMFLHQTGSSNPMGINSN LDKIQFHPYFSFKDILGFVILLGILFMISLLAPNALGEPDNFIYANPLSTPPHIKPEW YFLFAYAILRSVPNKLGGVVALAAAIMILLIIPFTHTSKQRGMQFRPLAQITFWILIA DLALLTWLGGEPAEYPFILMTQIASTVYFMIFILVFPILGYLENKMLLMSKNTGKFNW KLVY" CDS 4014..4979 /note="NCBI gi: 515486" /product="NADH dehydrogenase subunit 1" /codon_start=1 /translation="MLIMLTSTLILVLMVLLAVAFLTMVERKTLGYMQLRKGPNVVGF MGLLQPIADGVKLFLKEPVWPLAASPILFIVAPIMALTLALSLWMLIPMPQSISTINI TLLVIMAISSLSVYAILGSGWASNSKYALIGALRAVAQTISYEVSLGLILLCLVILTG SFSLQAFIYTQEHTWFLLSSWPLAAMWFVSTLAETNRTPFDLTEGESELVSGFNVEYA GGPFALFFLAEYSNILFMNTLTAIMFLGPLGSNNLNILPIINIMMKATPLIILFLWIR ASYPRFRYDQLMHLMWKNFLPLNLALFTLQLSLAVSFGGAGVPQM" CDS 5214..6257 /note="NCBI gi: 515487" /product="NADH dehydrogenase subunit 2" /codon_start=1 /translation="MLSPLIQSTLLMTLGLGTLVTFSSTSWILAWIGLEINTIAIIPL MAKTHHPRSIEATTKYFIAQSAGSATLLITACLTAWYSGNWAISPSNDPIILNAMTLA LMLKLGMAPMHFWLPEVMVGLDFITGMILATWQKLAPITLLIQIAQDQNNMFILIPAL LSVFVGGWGGLNQTQTRKILAYSSIAHMGWITSMAPFNPTITWLTTLIYCLITSATFI NLHILKANKITALTMNKHNQISQMLLLLLLLSLGGLPPLTGFINKLLASIELANQNLI IYLFMMMMGSLLSLFFYTRMCYLSIILSPPCSTTNLILWRVVSNKPMTLITMLSTNLF IMTPQLLAVFTLH" CDS 6610..8163 /note="GTG start codon. NCBI gi: 515488." /product="cytochrome oxidase subunit I" /codon_start=1 /translation="MTHIRWLFSTNHKDIGTLYLIFGAWAGMVGTALSILIRAELSQP GTLLGDDQIFNVIVTAHAFVMIFFMVMPIMIGGFGNWLVPLMLGAPDMAFPRMNNMSF WLLPPSLLLLLASAGVEAGAGTGWTVYPPLAGNLAHTGASVDLTIFSLHLAGVSSILG AVNFITTIFNMKPPTMTQYQTPLFVWSVLITAVLLLLSLPVLAAAITMLLTDRNLNTS FFDPAGGGDPILYQHLFWFFGHPEVYILILPGFGIISHVVAYYAGKKEPFGYMGMVWA MMAIGLLGFIVWAHHMFTVGMDVDTRAYFTSATMIIAIPTGVKVFSWLATLHGGKIVW HTPMLWALGFIFLFTVGGLTGIVLSNSSLDIILHDTYYVVAHFHYVLSMGAVFAIMAG FVHWFPLFTGYTLNETWAKAHFIIMFAGVNLTFFPQHFLGLAGMPRRYSDYPDAYTTW NIISSIGSTVSLIAVMLFMFILWEAFSAKRKAIATDLLNTNLEWLHGCPPPYHTYEEP AFVQTNFKK" CDS 8298..8987 /note="NCBI gi: 515489" /product="cytochrome oxidase subunit II" /codon_start=1 /translation="MAQQAQLGLQDAASPIMEELIHFHDHTLTVVFLISVLIFYLIIV MVTTTFMNKHSLDSQEVEIVWTVMPAIVLITIALPSLRILYLTDEISNPHLTIKAVGH QWYWSYEYTDYHQMEFDSYMIPTNELEPGGIRLLDVDHRIVVPMESPVRMLITSEDVI HSWTIPSLGTKVDAVPGRLNQATFITTRPGLFFGQCSEICGANHSFMPIALEAVPLSN FENWTTKVLAS" CDS 9064..9231 /note="NCBI gi: 515490" /product="ATPase 8" /codon_start=1 /translation="MPQLDPAPWFSMLTVSWLIIFLLIMPTILFYQPQNTISTKQVTK PKQSTWTWPWH" CDS 9222..9935 /note="NCBI gi: 515491" /product="ATPase 6" /codon_start=1 /translation="MTLDIFDQFTSPTMFGLPLAWLAMLAPSLMLVSQTPKFIKSRYH TLLTPILTSIAKQLFLPMNQQGHKWALICMASMMFILMINLLGLLPYTYTPTTQLSMN MGLAVPLWLATVLIGLQKKPTEALAHLLPEGTPAALIPMLIIIETISLFIRPIALGVR LTANLTAGHLLMQLVSMTTFVMIPVISISIITSLLLLLLTILELAVAVIQAYVFILLL TLYLQENVYVPPSSCMPHG" CDS 9901..10686 /note="NCBI gi: 515492" /product="cytochrome oxidase subunit III" /codon_start=1 /translation="MSHQAHAYHMVDPSPWPLTGAGAALLMTSGLAMWFHKNSCILMT LGLILMLLTMYQWWRDIVREGTFLGHHTSPVQQGLRYGMILFIISEVCFFAGFFWAFY HASLAPTPELGLTWPPTGINPLNPFEVPLLNTAVLLASGVSVTWAHHSITEKNRTETT QALTLTVLLGLYFTALQIMEYYETPFTMADGVYGSTFFVATGFHGLHVIIGSLFLLTC LLRHLQYHFTSKHHFGFEAAAWYWHFVDVVWLFLYISIYWWGS" CDS 10765..11115 /note="NCBI gi: 515493" /product="NADH dehydrogenase subunit 3" /codon_start=1 /translation="MNSFMVMIMLTLTLSSIMALLAFWLPIMKPDSEKLSPYECGFDP QGSARLPFSLRFFLVAILFLLFDLEIALLLPSPWATNISNPEFTLLWASLFVLLLTLG LIYEWLQGGLDWAE" CDS 11194..11484 /note="NCBI gi: 515494" /product="NADH dehydrogenase subunit 4L" /codon_start=1 /translation="MPTTLIFTSFFLALLGLSLQRKHLLSLLLTLESMALALYVSTAL WALNNTSLPIMAAPLIILTFSACEAGMGLSLMIATARTHNTDQLKALNLLKC" CDS 11478..12854 /note="NCBI gi: 515495" /product="NADH dehydrogenase subunit 4" /codon_start=1 /translation="MLKLIIPSIMLIPMTFLINKKSLLWTATTFFSFLIAALSTLTLN MDVAEHNSTNPLLSIDQFSCPLIMLSCWLLPLTIMGSQAHMKTEPITRQKTMISLLIL LQVLLCITFGASNLLMFYIAFETTLIPTLLIITRWGNQKERLTAGLYFLFYTLSASLP LLLALIMIQTHLNSLSIYIIPLSNLTLLLNTPWSETLWWIACFLAFLIKMPLYIFHLW LPKAHVEAPIAGSMILAAILLKLGGYGMIRMSSLFIPLTKDLAVPFMIIAMWGMIVTS SICLRQTDLKSMIAYSSVSHMGLVVAGIFTMTPWAWSGALAMMIAHGLVSSGLLCLAN ITYERTHTRSIFMNRGLKTLFPLMSFWWLMMTFANMALPPFPNFMAEILIITSLFNWS NWTILLLGLSMTLTALFSLNMLIMTQHEHPNKHAPVNPSTTREHLLMLMHMAPIILLI ANPSAIMI" CDS 13068..14864 /note="NCBI gi: 515496" /product="NADH dehydrogenase subunit 5" /codon_start=1 /translation="MNSHYLTLIMNSGALLTIIVLLPPIIMPKPSMILTTKLVKISMF ISLIPLTIYLNENMETTLTMKPWMDWALFNIALSFKIDKYTVIFTPIALMITWSIMEF SQWYMAKERHMDKFFKYLLLFLITMITFISANNLLQLFIGWEGVGIMSFLLISWWSGR TKANISALQAVAYNRIGDIGLMMSMVWMCSNTNSWDLQQITMLLSDQQYLIPTLGFLI AATGKSAQFGLHPWLPAAMEGPTPVSALLHSSTMVVAGVFLLIRLHPLFQNYPLMLEM TLCLGAMTTICAALCATTQNDIKKIIAFSTSSQLGLMMVAVGLNHPHIAFLHMCTHAF FKAMLFLCSGSIIHNMNNEQDIRKFSCLNNNLPLTTTCMTIGSAALMGLPFLAGFFTK DLILEALNTSYTNAWALMVTLMAVTLTTAYSSRLIIMSASGTPRYLPLTPTHENNFIK NPLKRLAWGSLISGLILTSTLPPMKPQIFTMPTYIKTIALMMFIISLIISMELTNKKI NQTTFSFFTQLAFYPHIIHRLTSHLSLIWSQKLMTQVMDVSWLEKIGPKGLANHQLKP STTLTEAHHLNSATLPLMAFALTLITLSLTAR" CDS complement(14849..15367) /note="NCBI gi: 515497" /product="NADH dehydrogenase subunit 6" /codon_start=1 /translation="MLSLVLCFFVMFLLGVAVVVLSPSPYFSALGLVFVAVSGCFIVL YHGGTFLSLVLVLLYLGGMMVVFVYSAALAADPYPEVLGGRVIWFFVICVLCICFAGY MSFNDFFLDVSVACEGADYTGGIFGAEWLGVTTFYEVGLILVLAGWALLVCLFSVLVV VRGVNRGALRAV" BASE COUNT 5227 a 3863 c 2182 g 4929 t ORIGIN BASE COUNT 608 a 337 c 278 g 398 t 9154 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 |~~~~~~~~| ~~~~~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~~(~~~~ 361 ~~~~~~~~~) ~|~~~~~~~~ ~~~~~~~|~~ ~~~~~~~(~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~)~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~(~~~~ 481 )~~~|~~~~~ ~~(~~~~~)~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~~~)~ 541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~- ---------- |-----accg 841 cAA(ACCA)U Ugc------- ---------- ---------- ---------- ---------- 901 ---------- ------c-cc |cau-uuUA- -GUAU-A(-G GUGA)UAGAA -Aaaaa---- 961 -------<-- ---------- ---------- ---------- ---------- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- --->------ 1201 ---------- ---------- ---------- ---------< ---------- ---------- 1261 ---------- ---------- ---------> ---------- ---------- ---|-(---) 1321 ---------- ---------- ---------- ---------- ---------- ---------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- ---------- ---------- ---------- 1561 ---------- ---------- ---------- ---------- ---------- ---------- 1621 ---------- --auuauaca caua-aua-- ----GUACC( -GCAA-)GGG ---AAU-AU- 1681 UGaaaaagaa gugaaauaaa uugau----- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- -----uaa-G U-CAAA GCAAAG---- --------<- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------> (--auuaaau 2041 --)------- -----CUU-G UACCUU(UU- GCAUC)AUGG |CUU-AGCaa gcaaa--cc- 2101 cg-------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ------<--- ---------- ---------- ---------- ---------- 2581 -a-------- ---------- ---------- ---------- ---------- ---------- 2641 ------auau acugc>---- ---------- ---------- ---------- ---------c 2701 gcc-acCCCG AA-ACUAG-A CG-AGCUACC CUG-GGA-UU ACCU------ ---------- 2761 -(-------- ---------- ---------- ---------- ----auaa-) ---------- 2821 -GGGUUAA-U CC-GUAUCU( GUGGCAA-A) AGAU-UGGAA --AAACCCC- UGGGUAG-AG 2881 GU(G-AAAA) GCC-UACC-G A-GCCUAGUG AUAGCU-GGU UACUU--AAG AA-ACA-AGU 2941 (-UUAA)GCU UG-AU-CUUA ACUu<----- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 --------|- ---------- ---------- ---------- ---------< guagaugagc 3121 aaca-----a aauuacuuag aaauuuaaac aucuuacucc ucuaca---- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---->----- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ------CU-U -UAAG-UUUU AUUCA--CU- AG-GG(-GUA 3481 CAG)CCCUAG UG-AA----- -cAGAG(AUA -CAG)CUC-u auuaa-u-ua -ga-UAA--- 3541 --uau-acca cauuuua-a- acu------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- -<-------- ---------- ---------- 3721 ---------- ---------- ---------- ---------- -->uaaGU-A GGC(CUAAAA 3781 GC-A)-GCCA -Ccaa|g(a- ag)-|AAAAG C(--GUUACA )GC|-UUA-- -------------- -------|-- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- ---------- 4021 ---------- ---------- ---------- ---------- ---------- ---------- 4081 -------|-- agac--ccu| a--u-aa|-- --------ac ---------- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- ---------- ---------- ---------- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- --------(- 4441 ------)--- ---------- -------acu aUUAA-GU|- AA-UCCUA-- ---------- 4501 ---------- ---------- (uaaa---)< ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ------->-- ---------- -|-------| -AUAGGAGAU AUCCUGC-UA 4681 AG|AUUAGUA -AUUU-GAG- c--------- (-ccgcaccc c--------- ---------- 4741 ---------- -----)---- ----u-|cua aauguaaGUG Uac-accaga u|----cgga 4801 c-caac--ca c--------- ---------- --)------- -ugga----- ---------- 4861 ---aauuaa- -cggc----- ---------- ---------- ---------- -------<-c 4921 cuuaaaacaa caggaaguca gaaacauaaa caacaacaag aaaaacaaga acuaaua--- 4981 >--------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ------|--- ---------- |--------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ---------- ---------- 5221 ---------- ---------- ---------- ---------- ---------- ---------- 5281 ---------- ---------- ---------- ---------- ---------- ---------- 5341 ---------- ---------- ---------- ---------- ---------- ---------- 5401 ---------- ---------- ---------- ---------- ---------- ---------- 5461 ---------- ---------- ---|------ ---------- ---------- ---------- 5521 |--------- ---------- ---------- ---------- ---------- ---------- 5581 --<------- ---------- ---------- ---------- ---------- ---------- 5641 ---------- ---------- ------->-- ---------- ---------- ---<------ 5701 ---------- ---------- ---------- ---------- ---------- ---------- 5761 ---------- ---------- ---------- ---------- ---------- ---------- 5821 ---------- ---------- ---------- ---------- ---------- ---------- 5881 ---------- ---------- ---------- ---------- ---------- ---------- 5941 ---------- ---------- ---------- ---------- ---------- ---------- 6001 ---------- ---------- ---------- ---------- ---------- ---------- 6061 ---------- ---------- ---------- ---------- ---------- ---------- 6121 ---------- ---------- ---------- ---------- ---------- ---------- 6181 ---------- ---------- ---------- ---------- ---------- ---------- 6241 ---------- ---------- ---------- ---------- ---------- ---------- 6301 ---------- ---------- ---------- ---------- ---------- ---------- 6361 ---------- ---------- ---------- ---------- ---------- ---------- 6421 ---------- ---------- ------>--- ---------- ---------- -accg--|-- 6481 --uUAACCC- -(UACACU)G G|AACAU--- ----(aau-- ------)--- ----auaga| 6541 |---AGAU-A U--AAAGGAU -AAGA-AGGA ACUCGGCAAA ---------- ----(----- 6601 )--------- ---|------ ---------- -----(---- ---)<----- ---------- 6661 ---------- ---------- ---------- ---------- ---------- ---------- 6721 ---------- ---------- ---------- ---------- --->------ ---------- 6781 ----|-(--- )--------c acAUGCCU|C GC---CUG-U UU(ACCAA)A AA-CAUC-AC 6841 CUCCAG|--- ---------- ---------- (auaaaaauc aa----)--- ---------- 6901 ------GUA- UUG-GAGGCA AGACCU<--- ---------- ---------- ---------- 6961 ---------- ---------- -------->G CC-CA-AU|G AU-------- ---------- 7021 ---------- --(------- ---------- ---------- ---------- ---------- 7081 ---------- ---------- ---------u aau)------ ---------- ---------| 7141 ---AUUG-AA U-|GG-C|-C -GCGGU-(AC -UUUG)ACCG UG|U(AAA)- AG-UAGCGUA 7201 AUC-AC-U-U |GUCUUG(-U AAAU-)UAAG AC|UG-GAAU GAAAGGUUAC A-CGAGGGCA 7261 UA-------- ---------- -------ACU GUCUCCUUAU CCCU-AU-CA ----AUGAAA 7321 UU|G|ACCUA CC-CG(U-GC AAAGG)CGGG UAU----AAA CCCAUAAGAC GAGAAG-ACC 7381 CUGUGG-|-A GCUUC-cAAA CA|--u-uua ca---uc--| <--------- ---------- 7441 ---------- ---------- --->------ ---------- ---------- ---------- 7501 ---------- ---------- ---------- -- --(------- -)-------- ---------- 7681 ---------- -------|-- ---------- ---------- ---------- ---------- 7741 -----(---- ----)----- ---------- ---------- ---------- --------<- 7801 ---------- ---------- ---------- ---------- ---------- ---------- 7861 ---------- ---------- ---------- ---------- ---------- ---------- 7921 ---------- ---------- ---------- ---------- ---------- ---------- 7981 ---------- ---------- ---------- ---------- ---------- ---------- 8041 ---------- ---------- ---------- ---------- ---------- ---------- 8101 ---------- ---------- ----->---- --cga-u-gu -ac---A-GU UUUAGGUUG( 8161 GGG)CA-AC- C|ACGGAA(- --------CA AAAGU-AAU- )AUCC-AC|G |a|cga--|< 8221 cgaaaauaua auuuucuaag ccuaga---- ---------- ---------- ---------- 8281 ---------- ---------- ---------- ---------- ---------- ---------- 8341 ---------- ---------- ---------- ---------- ---------- ->-------- 8401 ---|------ ------<--- ---------- ---------- ---------- ---------- 8461 ---------- ---------- ---------- ---------- ---------- ---------- 8521 ---------- ---------- ---------- ---------- ---------- ---------- 8581 ---------- ---------- ---------- ---------- ---------- ---------- 8641 ---------- ---------> (--------- )--------- ---------- ---------- 8701 ---------- ---------- ---------- -------|-- (-|-----)- ---------- 8761 ------acca caacu-cua( --agcac--- )uagua-aaa cua------- ---------- 8821 ---------- ---------- ---------- ---------- ---------- -------acg 8881 u|---UA-AU AGACC-CAGC ---------- ---------- ---(------ ---------- 8941 ---------- ---------- ---------- ---------- -----aucac uu)--|---G 9001 CUGACUAAC- |GAA-ACAAG UUACCC|CAG G|GAUAACAG |C-GCA-A-U CCUUUCCACG 9061 AG(C--CCGA )AUCAACGAA --AGGGUUUA CG-ACCUCGA UGUU|GG--A U|C|GGGGC| 9121 AC-CC-CAAU GG-CG(--CA -AA)AGCUAU UAAA-GGU|U CGUU(UGUUC )AACGA-UUA 9181 A--AGCCCC- --ACGUGAUC UGAGUUCAGA CC|GG-A(GU AA)UCCAGGU CAGUUUCUAU 9241 CU|AUG---- --|-|<---- ---------- ---------- ---------- ----uuugc- 9301 >--------- ---------- --u-guu-uc cc--(UAGU- AC(-GAAA)G GACC-)ggug 9361 aa-ac-<--- ---------- ---------- -------->a agggucu-au ac-------- 9421 -|-------- (-----)<-- ---------- ---------- ---------- ---------- 9481 ---------- ---------- ---------- ---------- ---------- ---acuuau> 9541 ---------- ---------- gcaa-acccu acaucaau-- ---------- ---------- 9601 ---------- -----ccuau (gaaacc--a acuca)a-ua aga------- ---------- 9661 ---------- ---------| ------(--- )--------- -------|aa 9961 cu-(-agaua ---)-aguuu ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10021 ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~~~ 10141 ~~~~~~~~~~ ~~~~~~~~~~ ~)~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10201 ~~~~~~~~~~ ~|~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10321 ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ||||| // LOCUS (11)-GNATH 10775 bp RNA RNA 09-JAN-1999 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 10775) Corresponding GenBank entry: DIVIDER BASE COUNT 0 a 0 c 0 g 0 t 10775 others ORIGIN 1 |......... .......... .......... .......... .......... .......... 61 .......... .......... .......... .......... .......... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......... .......... .......... .......... 241 .......... .......... .......... .......... .......... .......... 301 .......... .......... .......... .......... .......... .......... 361 .......... .......... .......... .......... .......... .......... 421 .......... .......... .......... .......... .......... .......... 481 .......... .......... .......... .......... .......... .......... 541 .......... .......... .......... .......... .......... .......... 601 .......... .......... .......... .......... .......... .......... 661 .......... .......... .......... .......... .......... .......... 721 .......... .......... .......... .......... .......... .......... 781 .......... .......... .......... .......... .......... .......... 841 .......... .......... .......... .......... .......... .......... 901 .......... .......... .......... .......... .......... .......... 961 .......... .......... .......... .......... .......... .......... 1021 .......... .......... .......... .......... .......... .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .......... .......... .......... .......... .......... 1201 .......... .......... .......... .......... .......... .......... 1261 .......... .......... .......... .......... .......... .......... 1321 .......... .......... .......... .......... .......... .......... 1381 .......... .......... .......... .......... .......... .......... 1441 .......... .......... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... .......... .......... .......... .......... .......... 1621 .......... .......... .......... .......... .......... .......... 1681 .......... .......... .......... .......... .......... .......... 1741 .......... .......... .......... .......... .......... .......... 1801 .......... .......... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .......... .......... 1921 .......... .......... .......... .......... .......... .......... 1981 .......... .......... .......... .......... .......... .......... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... .......... .......... .......... .......... .......... 2161 .......... .......... .......... .......... .......... .......... 2221 .......... .......... .......... .......... .......... .......... 2281 .......... .......... .......... .......... .......... .......... 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... .......... 2701 .......... .......... .......... .......... .......... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... .......... 2881 .......... .......... .......... .......... .......... .......... 2941 .......... .......... .......... .......... .......... .......... 3001 .......... .......... .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .......... .......... 3181 .......... .......... .......... .......... .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .......... .......... .......... 3361 .......... .......... .......... .......... .......... .......... 3421 .......... .......... .......... .......... .......... .......... 3481 .......... .......... .......... .......... .......... .......... 3541 .......... .......... .......... .......... .......... .......... 3601 .......... .......... .......... .......... .......... .......... 3661 .......... .......... .......... .......... .......... .......... 3721 .......... .......... .......... .......... .......... .......... 3781 .....-.... .......... .......... .......... .......... .......... 3841 .......... .......... .......... .......... .......... .......... 3901 .......... .......... .......... .......... .......... .......... 3961 .......... .......... .......... .......... .......... .......... 4021 .......... .......... .......... .......... .......... .......... 4081 .......... .......... .......... .......... .......... .......... 4141 .......... .......... .......... .......... .......... .......... 4201 .......... .......... .......... .......... .......... .......... 4261 .......... .......... .......... .......... .......... .......... 4321 .......... .......... .......... .......... .......... .......... 4381 .......... .......... .......... .......... .......... .......... 4441 .......... .......... .......... .......... .......... .......... 4501 .......... .......... .......... .......... .......... .......... 4561 .......... .......... .......... .......... .......... .......... 4621 .......... .......... .......... .......... .......... .......... 4681 .......... .......... .......... .......... .......... .......... 4741 .......... .......... .......... .......... .......... .......... 4801 .......... .......... .......... ..)....... .......... .......... 4861 .......... .......... .......... .......... .......... .......... 4921 .......... .......... .......... .......... .......... .......... 4981 .......... .......... .......... .......... .......... .......... 5041 .......... .......... .......... .......... .......... .......... 5101 .......... .......... .......... .......... .......... .......... 5161 .......... .......... .......... .......... .......... .......... 5221 .......... .......... .......... .......... .......... .......... 5281 .......... .......... .......... .......... .......... .......... 5341 .......... .......... .......... .......... .......... .......... 5401 .......... .......... .......... .......... .......... .......... 5461 .......... .......... .......... .......... .......... .......... 5521 .......... .......... .......... .......... .......... .......... 5581 .......... .......... .......... .......... .......... .......... 5641 .......... .......... .......... .......... .......... .......... 5701 .......... .......... .......... .......... .......... .......... 5761 .......... .......... .......... .......... .......... .......... 5821 .......... .......... .......... .......... .......... .......... 5881 .......... .......... .......... .......... .......... .......... 5941 .......... .......... .......... .......... .......... .......... 6001 .......... .......... .......... .......... .......... .......... 6061 .......... .......... .......... .......... .......... .......... 6121 .......... .......... .......... .......... .......... .......... 6181 .......... .......... .......... .......... .......... .......... 6241 .......... .......... .......... .......... .......... .......... 6301 .......... .......... .......... .......... .......... .......... 6361 .......... .......... .......... .......... .......... .......... 6421 .......... .......... .......... .......... .......... .......... 6481 .......... .......... .......... .......... .......... .......... 6541 .......... .......... .......... .......... .......... .......... 6601 .......... .......... .......... .......... .......... .......... 6661 .......... .......... .......... .......... .......... .......... 6721 .......... .......... .......... .......... .......... .......... 6781 .......... .......... .......... .......... .......... .......... 6841 .......... .......... .......... .......... .......... .......... 6901 .......... .......... .......... .......... .......... .......... 6961 .......... .......... .......... .......... .......... .......... 7021 .......... .......... .......... .......... .......... .......... 7081 .......... .......... .......... .......... .......... .......... 7141 .......... .......... .......... .......... .......... .......... 7201 .......... .......... .......... .......... .......... .......... 7261 .......... .......... .......... .......... .......... .......... 7321 .......... .......... .......... .......... .......... .......... 7381 .......... .......... .......... .......... .......... .......... 7441 .......... .......... .......... .......... .......... .......... 7501 .......... .......... .......... .......... .......... .......... 7561 .......... .......... .......... .......... .......... .......... 7621 .......... .......... .......... .......... .......... .......... 7681 .......... .......... .......... .......... .......... .......... 7741 .......... .......... .......... .......... .......... .......... 7801 .......... .......... .......... .......... .......... .......... 7861 .......... .......... .......... .......... .......... .......... 7921 .......... .......... .......... .......... .......... .......... 7981 .......... .......... .......... .......... .......... .......... 8041 .......... .......... .......... .......... .......... .......... 8101 .......... .......... .......... .......... .......... .......... 8161 .......... .......... .......... .......... .......... .......... 8221 .......... .......... .......... .......... .......... .......... 8281 .......... .......... .......... .......... .......... .......... 8341 .......... .......... .......... .......... .......... .......... 8401 .......... .......... .......... .......... .......... .......... 8461 .......... .......... .......... .......... .......... .......... 8521 .......... .......... .......... .......... .......... .......... 8581 .......... .......... .......... .......... .......... .......... 8641 .......... .......... .......... .......... .......... .......... 8701 .......... .......... .......... .......... .......... .......... 8761 .......... .......... .......... .......... .......... .......... 8821 .......... .......... .......... .......... .......... .......... 8881 .......... .......... .......... .......... .......... .......... 8941 .......... .......... .......... .......... .......... .......... 9001 .......... .......... .......... .......... .......... .......... 9061 .......... .......... .......... .......... .......... .......... 9121 .......... .......... .......... .......... .......... .......... 9181 .......... .......... .......... .......... .......... .......... 9241 .......... .......... .......... .......... .......... .......... 9301 .......... .......... .......... .......... .......... .......... 9361 .......... .......... .......... .......... .......... .......... 9421 .......... .......... .......... .......... .......... .......... 9481 .......... .......... .......... .......... .......... .......... 9541 .......... .......... .......... .......... .......... .......... 9601 .......... .......... .......... .......... .......... .......... 9661 .......... .......... .......... .......... .......... .......... 9721 .......... .......... .......... .......... .......... .......... 9781 .......... .......... .......... .......... .......... .......... 9841 .......... .......... .......... .......... .......... .......... 9901 .......... .......... .......... .......... .......... .......... 9961 .......... .......... .......... .......... .......... .......... 10021 .......... .......... .......... .......... .......... .......... 10081 .......... .......... .......... .......... .......... .......... 10141 .......... .......... .......... .......... .......... .......... 10201 .......... .......... .......... .......... .......... .......... 10261 .......... .......... .......... .......... .......... .......... 10321 .......... .......... .......... .......... .......... .......... 10381 .......... .......... .......... .......... .......... .......... 10441 .......... .......... .......... .......... .......... .......... 10501 .......... .......... .......... .......... .......... .......... 10561 .......... .......... .......... .......... .......... .......... 10621 .......... .......... .......... .......... .......... .......... 10681 .......... .......... .......... .......... .......... .......... 10741 .......... .......... .......... ||||| // LOCUS (12)-CHOND 10775 bp RNA RNA 09-JAN-1999 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 10775) Corresponding GenBank entry: DIVIDER BASE COUNT 0 a 0 c 0 g 0 t 10775 others ORIGIN 1 |......... .......... .......... .......... .......... .......... 61 .......... .......... .......... .......... .......... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......... .......... .......... .......... 241 .......... .......... .......... .......... .......... .......... 301 .......... .......... .......... .......... .......... .......... 361 .......... .......... .......... .......... .......... .......... 421 .......... .......... .......... .......... .......... .......... 481 .......... .......... .......... .......... .......... .......... 541 .......... .......... .......... .......... .......... .......... 601 .......... .......... .......... .......... .......... .......... 661 .......... .......... .......... .......... .......... .......... 721 .......... .......... .......... .......... .......... .......... 781 .......... .......... .......... .......... .......... .......... 841 .......... .......... .......... .......... .......... .......... 901 .......... .......... .......... .......... .......... .......... 961 .......... .......... .......... .......... .......... .......... 1021 .......... .......... .......... .......... .......... .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .......... .......... .......... .......... .......... 1201 .......... .......... .......... .......... .......... .......... 1261 .......... .......... .......... .......... .......... .......... 1321 .......... .......... .......... .......... .......... .......... 1381 .......... .......... .......... .......... .......... .......... 1441 .......... .......... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... .......... .......... .......... .......... .......... 1621 .......... .......... .......... .......... .......... .......... 1681 .......... .......... .......... .......... .......... .......... 1741 .......... .......... .......... .......... .......... .......... 1801 .......... .......... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .......... .......... 1921 .......... .......... .......... .......... .......... .......... 1981 .......... .......... .......... .......... .......... .......... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... .......... .......... .......... .......... .......... 2161 .......... .......... .......... .......... .......... .......... 2221 .......... .......... .......... .......... .......... .......... 2281 .......... .......... .......... .......... .......... .......... 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... .......... 2701 .......... .......... .......... .......... .......... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... .......... 2881 .......... .......... .......... .......... .......... .......... 2941 .......... .......... .......... .......... .......... .......... 3001 .......... .......... .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .......... .......... 3181 .......... .......... .......... .......... .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .......... .......... .......... 3361 .......... .......... .......... .......... .......... .......... 3421 .......... .......... .......... .......... .......... .......... 3481 .......... .......... .......... .......... .......... .......... 3541 .......... .......... .......... .......... .......... .......... 3601 .......... .......... .......... .......... .......... .......... 3661 .......... .......... .......... .......... .......... .......... 3721 .......... .......... .......... .......... .......... .......... 3781 .....-.... .......... .......... .......... .......... .......... 3841 .......... .......... .......... .......... .......... .......... 3901 .......... .......... .......... .......... .......... .......... 3961 .......... .......... .......... .......... .......... .......... 4021 .......... .......... .......... .......... .......... .......... 4081 .......... .......... .......... .......... .......... .......... 4141 .......... .......... .......... .......... .......... .......... 4201 .......... .......... .......... .......... .......... .......... 4261 .......... .......... .......... .......... .......... .......... 4321 .......... .......... .......... .......... .......... .......... 4381 .......... .......... .......... .......... .......... .......... 4441 .......... .......... .......... .......... .......... .......... 4501 .......... .......... .......... .......... .......... .......... 4561 .......... .......... .......... .......... .......... .......... 4621 .......... .......... .......... .......... .......... .......... 4681 .......... .......... .......... .......... .......... .......... 4741 .......... .......... .......... .......... .......... .......... 4801 .......... .......... .......... ..)....... .......... .......... 4861 .......... .......... .......... .......... .......... .......... 4921 .......... .......... .......... .......... .......... .......... 4981 .......... .......... .......... .......... .......... .......... 5041 .......... .......... .......... .......... .......... .......... 5101 .......... .......... .......... .......... .......... .......... 5161 .......... .......... .......... .......... .......... .......... 5221 .......... .......... .......... .......... .......... .......... 5281 .......... .......... .......... .......... .......... .......... 5341 .......... .......... .......... .......... .......... .......... 5401 .......... .......... .......... .......... .......... .......... 5461 .......... .......... .......... .......... .......... .......... 5521 .......... .......... .......... .......... .......... .......... 5581 .......... .......... .......... .......... .......... .......... 5641 .......... .......... .......... .......... .......... .......... 5701 .......... .......... .......... .......... .......... .......... 5761 .......... .......... .......... .......... .......... .......... 5821 .......... .......... .......... .......... .......... .......... 5881 .......... .......... .......... .......... .......... .......... 5941 .......... .......... .......... .......... .......... .......... 6001 .......... .......... .......... .......... .......... .......... 6061 .......... .......... .......... .......... .......... .......... 6121 .......... .......... .......... .......... .......... .......... 6181 .......... .......... .......... .......... .......... .......... 6241 .......... .......... .......... .......... .......... .......... 6301 .......... .......... .......... .......... .......... .......... 6361 .......... .......... .......... .......... .......... .......... 6421 .......... .......... .......... .......... .......... .......... 6481 .......... .......... .......... .......... .......... .......... 6541 .......... .......... .......... .......... .......... .......... 6601 .......... .......... .......... .......... .......... .......... 6661 .......... .......... .......... .......... .......... .......... 6721 .......... .......... .......... .......... .......... .......... 6781 .......... .......... .......... .......... .......... .......... 6841 .......... .......... .......... .......... .......... .......... 6901 .......... .......... .......... .......... .......... .......... 6961 .......... .......... .......... .......... .......... .......... 7021 .......... .......... .......... .......... .......... .......... 7081 .......... .......... .......... .......... .......... .......... 7141 .......... .......... .......... .......... .......... .......... 7201 .......... .......... .......... .......... .......... .......... 7261 .......... .......... .......... .......... .......... .......... 7321 .......... .......... .......... .......... .......... .......... 7381 .......... .......... .......... .......... .......... .......... 7441 .......... .......... .......... .......... .......... .......... 7501 .......... .......... .......... .......... .......... .......... 7561 .......... .......... .......... .......... .......... .......... 7621 .......... .......... .......... .......... .......... .......... 7681 .......... .......... .......... .......... .......... .......... 7741 .......... .......... .......... .......... .......... .......... 7801 .......... .......... .......... .......... .......... .......... 7861 .......... .......... .......... .......... .......... .......... 7921 .......... .......... .......... .......... .......... .......... 7981 .......... .......... .......... .......... .......... .......... 8041 .......... .......... .......... .......... .......... .......... 8101 .......... .......... .......... .......... .......... .......... 8161 .......... .......... .......... .......... .......... .......... 8221 .......... .......... .......... .......... .......... .......... 8281 .......... .......... .......... .......... .......... .......... 8341 .......... .......... .......... .......... .......... .......... 8401 .......... .......... .......... .......... .......... .......... 8461 .......... .......... .......... .......... .......... .......... 8521 .......... .......... .......... .......... .......... .......... 8581 .......... .......... .......... .......... .......... .......... 8641 .......... .......... .......... .......... .......... .......... 8701 .......... .......... .......... .......... .......... .......... 8761 .......... .......... .......... .......... .......... .......... 8821 .......... .......... .......... .......... .......... .......... 8881 .......... .......... .......... .......... .......... .......... 8941 .......... .......... .......... .......... .......... .......... 9001 .......... .......... .......... .......... .......... .......... 9061 .......... .......... .......... .......... .......... .......... 9121 .......... .......... .......... .......... .......... .......... 9181 .......... .......... .......... .......... .......... .......... 9241 .......... .......... .......... .......... .......... .......... 9301 .......... .......... .......... .......... .......... .......... 9361 .......... .......... .......... .......... .......... .......... 9421 .......... .......... .......... .......... .......... .......... 9481 .......... .......... .......... .......... .......... .......... 9541 .......... .......... .......... .......... .......... .......... 9601 .......... .......... .......... .......... .......... .......... 9661 .......... .......... .......... .......... .......... .......... 9721 .......... .......... .......... .......... .......... .......... 9781 .......... .......... .......... .......... .......... .......... 9841 .......... .......... .......... .......... .......... .......... 9901 .......... .......... .......... .......... .......... .......... 9961 .......... .......... .......... .......... .......... .......... 10021 .......... .......... .......... .......... .......... .......... 10081 .......... .......... .......... .......... .......... .......... 10141 .......... .......... .......... .......... .......... .......... 10201 .......... .......... .......... .......... .......... .......... 10261 .......... .......... .......... .......... .......... .......... 10321 .......... .......... .......... .......... .......... .......... 10381 .......... .......... .......... .......... .......... .......... 10441 .......... .......... .......... .......... .......... .......... 10501 .......... .......... .......... .......... .......... .......... 10561 .......... .......... .......... .......... .......... .......... 10621 .......... .......... .......... .......... .......... .......... 10681 .......... .......... .......... .......... .......... .......... 10741 .......... .......... .......... ||||| // LOCUS mt.S.canic 10775 bp RNA RNA 17-SEP-1998 DEFINITION Mitochondrion Scyliorhinus canicula.; 12S rRNA; 16S rRNA; ATPase 6; ATPase 8; COI gene; COII gene; COIII gene; complete genome; control region; cytb gene; mitochondrial; NADH1 gene; NADH2 gene; NADH3 gene; NADH4 gene; NADH4L gene; NADH5 gene; NADH6 gene; origin of replication; tRNA-Ala; tRNA-Arg; tRNA-Asn; tRNA-Asp; tRNA-Cys; tRNA-Gln; tRNA-Glu; tRNA-Gly; tRNA-His; tRNA-Ile; tRNA-Leu(CUN); tRNA-Leu(UUR); tRNA-Lys; tRNA-Met; tRNA-Phe; tRNA-Pro; tRNA-Ser(AGY); tRNA-Ser(UCN); tRNA-Thr; tRNA-Trp; tRNA-Tyr; tRNA-Val. ACCESSION Y16067 KEYWORDS 12S rRNA; 16S rRNA; ATPase 6; ATPase 8; COI gene; COII gene; COIII gene; complete genome; control region; cytb gene; mitochondrial; NADH1 gene; NADH2 gene; NADH3 gene; NADH4 gene; NADH4L gene; NADH5 gene; NADH6 gene; origin of replication; tRNA-Ala; tRNA-Arg; tRNA-Asn; tRNA-Asp; tRNA-Cys; tRNA-Gln; tRNA-Glu; tRNA-Gly; tRNA-His; tRNA-Ile; tRNA-Leu(CUN); tRNA-Leu(UUR); tRNA-Lys; tRNA-Met; tRNA-Phe; tRNA-Pro; tRNA-Ser(AGY); tRNA-Ser(UCN); tRNA-Thr; tRNA-Trp; tRNA-Tyr; tRNA-Val. SOURCE Mitochondrion Scyliorhinus canicula. ORGANISM Mitochondrion Scyliorhinus canicula. REFERENCE 1 (bases 1 to 16697) AUTHORS Delarbre,C., Spruyt,N., Delmarre,C., Gallut,C., Barriel,V., Janvier,P., Laudet,V. and Gachelin,G. TITLE The complete nucleotide sequence of the mitochondrial DNA of the dogfish, scyliorhinus canicula JOURNAL Genetics 150 (1), 331-344 (1998) STANDARD No information REFERENCE 2 (bases 1 to 16697) AUTHORS Gachelin,G. TITLE Direct Submission JOURNAL Submitted (30-DEC-1997) G. Gachelin, Institut Pasteur, Dept. of Immunology, 25 rue du Docteur ROUX, 75015 Paris Cedex, FRANCE STANDARD No information COMMENTS Sequence information (bases 1 to 10775) Corresponding GenBank entry: Y16067 Related sequence Y09526. BASE COUNT 595 a 334 c 284 g 460 t 9102 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~A C--------- ----cuuaaa 301 |gcu--agc| cu-------- -|-------- ---------- ---------| -----(---- 361 ---------) -|-------- -------|-- -------(-- ---------- ---------- 421 -------)-- ---------- ---------- ---------- ---------- -----(---- 481 )---|----- --(-----)- ---------- ---------- ---------- -(------)- 541 ---------- ---------- ---- ---------- |------aac 841 uAA(AACA)U Ucuuca---- ---------- ---------- ---------- ---------- 901 ------(--- --)------- |ccc-uuaA- -GUAU-G(-G GCGA)CAGAA -caagg---- 961 -------<-- --accuc--- ---------- ---------- ---------- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- --->------ 1201 ---------- ---------- ---------- ---------< ---------- ---------- 1261 ---------- ---------- ---------> (------)-- ---------- ---|-(---) 1321 -------(-- -----)---- ---------- ---------- ---------- --<------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- >--------- ------(--- ---------- 1561 -------)-- ---------- ---------- -(-------) ---------- ---------- 1621 ---------- --AGCGCAAU AGCU-UA--- ---UGUACC( -GCAA-)GGG ---AAA-GC- 1681 UGaaaaagaa augaaauaaa uaauu----- ---------- ---------- ---------- 1741 ---------- -(-------) ---------- ---------- ---------- ---------- 1801 ---------- -----aaa-G U-AAAA GCAGAG---- --------<- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------> (--auuaacc 2041 --)------- -----CUC-G UACCUU(UG- GCAUC)AUGA |UUU-AAUUA GAaaa--ac- 2101 uaggcaaag- ---------- -------(-- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- -)-------- ---------- 2521 ----(----- )-----<--- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- agac->---- --(------) ---------- ---------- -cuuaagucu 2701 acc-cuCCCG AA-ACUAA-A CG-AGCUACU CCG-AAG-CA GC-------- ---------- 2761 -(-------- ---------- ---------- ---------- auuau-aga) ---------- 2821 ---GCUAA-C CC-GUCUCU( GUGGCAA-A) AGAG-UGGGA --AGACUUC- CGAGUAG-UG 2881 GU(G-ACAA) GCC-UACC-G A-GUUUAGUG AUAGCU-GGU UACCC--AAG AA-AAG-AAC 2941 (-UUUA)AUU CU-GC-AUUA AUC-<----- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ------->-- ---|------ 3061 -|------|- ---------- ---------- --------(- --------)< cccuuucuac 3121 uaaa-----u aagaaucuuc uuauuaaa-- ---------- ---------- ---------- 3181 ----guuaaa cauaga---- ---------- ---------- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---->----- ---------- 3301 ---------- ---------- ----|----- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ------ga-u -uaau-AGUU AUUUA--GA- AG-AG(-GAA 3481 CAG)CCCUUC UA-AA----- -UUAAG(AUA -CAA)CUU-u uuaag-g-ug -gu-UAA--- 3541 --ugaucaua auuauua-a- g-guuu---- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ------uuuc c<-------- ---------- ---------- 3721 ---------- ---------- ---------- ---------- -->UCAGU-G GGC(CUAAAA 3781 GC-A)-GCCA -CCUG|u(u- aa)-|GUAAG C(--GUCACA )GC|-uCua- guuu--<--- 3841 uu-uaaaaac ccauaauuua gauauuuau- ---------- ---------- ---------- 3901 ->-------- -------|-- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- ---------- 4021 ---------- ---------- ---------- ---------- ---------- ---------- 4081 -------|uc aaaa--acc| cc-c-uu|-- ---------- ---------- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- ---------- ---------- ---------- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- --------(- 4441 ------)--- ---------- ----aacccu aUUGG-GU|- UA-UUUUAUA u--------- 4501 ---------- ---------- (aaaau--)< ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ------->-- ---------- -|-------| UAUAAAAGAA CUUAUGU-UA 4681 AA|AUGAGUA -AUAA-GA-- GG-------- (-auaaacc- ---------- ---------- 4741 ---------- -----)---- ---uc-|ucc ----cg-ACA CAA--gugua u|----guca 4801 gaaa----ga ---------- ----(-auua aa)u-c|--a cugaua---- ---------- 4861 ---auuaaa- -cga------ ---------- -------(-- ---------- ------)<-- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 >--------- ---------- ---------- ----(----- ---------- ---------- 5041 ---------- ---------- ----)----- |-----|--- ---------- |--<------ 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ---------- ---------- 5221 ---------- ---------- ---------- ---------- ---------- ---------- 5281 ---------- ---------- ---------- ---------- ---------- ---------- 5341 ---------- ---------- ---------- ---------- ---------- ---------- 5401 ---------- ---------- ------->-- ---------- ---------- ---------- 5461 -----(---- ------)--- ---|------ --------|- ---------- -(-----)-- 5521 |--------- ---------- ---------- -----(---- )--------- ---------- 5581 --<------- ---------- ---------- ---------- ---------- ---------- 5641 ---------- ---------- ------->-- ---------- ---------- ---<------ 5701 ---------- --ucccagac ugaggccauc auaacuucau uucuugacua gaaaacccua 5761 ucuuacuau- ---------- ---------- ---------- ---------- ---------- 5821 ---------- ---------- ---------- ---------- ---------- ---------- 5881 ---------- ---------- ---------- ---------- ---------- ---------- 5941 ---------- ---------- ---------- ---------- ---------- ---------- 6001 ---------- ---------- ---------- ---------- ---------- ---------- 6061 ---------- ---------- ---------- ---------- ---------- ---------- 6121 ---------- ---------- ---------- ---------- ---------- ---------- 6181 ---------- ---------- ---------- ---------- ---------- ---------- 6241 ---------- ---------- ---------- ---------- ---------- ---------- 6301 ---------- ---------- ---------- ---------- ---------- ---------- 6361 ---------- ---------- ---------- ---------- ---------- ---------- 6421 ---------- ---------- ------>--- ---------- ---------- --ucgu-|-- 6481 ---UAACCC- -(AACACA)G G|AGUGU--- ----(-cuua a-----)--- -----ggaa| 6541 |---AGAU-U A--AAAGAAA -GUAA-AGGA ACUCGGCAAA ---------- ----(----- 6601 )--------- ---|------ ---------- -----(---- ---)<----- ---------- 6661 ---------- ---------- ---------- ---------- ---------- ---------- 6721 ---------- ---------- ---------- ---------- --->------ ---------- 6781 ----|-(--- )--------c auAAACUC|C GC---CUG-U UU(ACCAA)A AA-CACC-GC 6841 CUCUUG|--- ---------- ---------- (-cuuacca- ------)--- ---------- 6901 ---------- UAA-GAGGUC CCGCCU<--- ---------- ---------- ---------- 6961 ---------- ---------- -------->G CC-CU-GU|G AC-------- ---------- 7021 ---------- --(------- ---------- ---------- ---------- ---------- 7081 ---------- ---------- ---------a au-)------ ---------- ---------| 7141 ---GUUC-AA C-|GG-C|-C -GCGGU-(AU -UUUG)ACCG UG|C(AAA)- GG-UAGCGUA 7201 AUC-AC-U-U |GUCUUU(-U AAAU-)GAAG AC|CC-GUAU GAAAGGCACC A-CGAGAGUU 7261 UG-------- ---------- -------ACU GUCUCUACUC UCUA-AU-CA ----AUGAAA 7321 UU|G|AUCUU CU-CG(U-GC AGAAG)CGAG UAU----GAU AACAUAAGAC GAGAAG-ACC 7381 CUAUGG-|-A GCUUC--AAA UA|--c-aua aau--ua--| <--------- ---------- 7441 ---------- ---------- --->------ ---------- ---------- ---------- 7501 ---------- ---------- ---------- --<------a uuauguacau auuaauaauc 7561 ccaggacaua aacaaaaaau auaauacuuc ---------- ---------- ---------- 7621 ---------- ---------- ---------> --(------- -)-------- ---------- 7681 ---------- -------|-- ---------- ---------- ---------- ---------- 7741 -----(---- ----)----- ---------- ---------- ---------- --------<- 7801 ---------- ---------- ---------- ---------- ---------- ---------- 7861 ---------- ---------- ---------- ---------- ---------- ---------- 7921 ---------- ---------- ---------- ---------- ---------- ---------- 7981 ---------- ---------- ---------- ---------- ---------- ---------- 8041 ---------- ---------- ---------- ---------- ---------- ---------- 8101 ---------- ---------- ----->---- --uaa-u-uu -aac--U-AU UUUUGGUUG( 8161 GGG)UG-AC- C|AAGGGG(- --------AA AAAUGAAUC- )CCCC-UU|A |u|cg---|< 8221 ---------- ---------- ---------- ---------- ---------- ---------- 8281 ---------- ---------- ---------- ---------- ---------- ------accg 8341 aguauuca-- aauac----- ---------- ---------- ---------- ->-------- 8401 ---|------ ------<--- ---------- ---------- ---------- ---------- 8461 ---------- ---------- ---------- ---------- ---------- ---------- 8521 ---------- ---------- ---------- ---------- ---------- ---------- 8581 ---------- ---------- ---------- ---------- ---------- ---------- 8641 ---------- ---------> (--------- )--------- ---------- ---------- 8701 ---------- ---------- ---------- -------|-- (-|-----)- ---------- 8761 -----uuaaa aguua-gaa( -uuacaa--- )uucua-acc gauaaaaauu uuau------ 8821 ---------- ---------- ---------- ---------- ---------- ---------c 8881 g|---aaaaa UGACC-cagg ---------- ---------- ---(------ ---------- 8941 ---------- ---------- ---------- ---------- -------auu uu)--|---c 9001 cugAUCAAU- |GAA-CCAAG UUACCC|UAG G|GAUAACAG |C-GCA-A-U CCUUUUUCAG 9061 AG(U--UCCU )AUCGACAAA --AGGGUUUA CG-ACCUCGA UGUU|GG--A U|C|AGGAC| 9121 AU-CC-UAAU GG-UG(--CA -AC)CGCUAU UAAG-GGU|U CGUU(UGUUC )AACGA-UUA 9181 A-uAGUCCU- --ACGUGAUC UGAGUUCAGA CC|GG-A(GA AA)UCCAGGU CAGUUUCUAU 9241 CU|aug---- --|-|<---- ---------- ---------- ---------- -----aauu- 9301 >--------- ---------- -uA-UUU-UU CC--(UAGU- AC(-GAAA)G GACC-)GGAG 9361 A--AA-<--- ---------- ---------- -------->- uggggcc-aa ua-------- 9421 -|-------- (-----) 9541 ---------- ---------- cacg-ccuca uu-------- ---------- -------uuc 9601 ---------- ---aucuauu (gaacca--a acuaa)a-au -ag-auaaga a--------- 9661 ---------- -------<-- ---------- ---------- ---------- ---------- 9721 ---------- ---------- ---------- ---------- ---------- ---------- 9781 ---------- ---------- ---------- ---------- ---------- ---------- 9841 ---------- ---------- ---------- ---------- ---------- ---------- 9901 --------aa gauuaucuau u----->--| ------(--- )--------- -------|gc 9961 cc-(aagaaa a--)-ggguu ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10021 ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~~~ 10141 ~~~~~~~~~~ ~~~~~~~~~~ ~)~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10201 ~~~~~~~~~~ ~|~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10321 ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ||||| // LOCUS mt.M.manaz 10775 bp RNA RNA 12-SEP-1998 DEFINITION Mitochondrion Mustelus manazo.; . ACCESSION AB015962 KEYWORDS . SOURCE Mitochondrion Mustelus manazo. ORGANISM Mitochondrion Mustelus manazo. REFERENCE 1 (sites) AUTHORS Cao,Y., Waddell,P.J., Okada,N. and Hasegawa,M. TITLE The complete mitochondrial DNA sequence of the shark (Mustelus manazo): Evaluating rooting contradictions to living bony vertebrates JOURNAL Mol. Biol. Evol. (1998) In press STANDARD No information REFERENCE 2 (bases 1 to 16707) AUTHORS Cao,Y. TITLE Direct Submission JOURNAL Submitted (07-JUL-1998) to the DDBJ/EMBL/GenBank databases. Ying Cao, The Institute of Statistical Mathematics; 4-6-7 Minami-Azabu, Minato-ku, Tokyo 106-8569, Japan (E-mail:cao@ism.ac.jp, Tel: +81-3-5421-8748, Fax: +81-3-5421-8796) STANDARD No information COMMENTS Sequence information (bases 1 to 10775) Corresponding GenBank entry: AB015962 BASE COUNT 596 a 336 c 284 g 454 t 9105 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~A C--------- ----cuuaaa 301 |acu--agc| cu-------- -|-------- ---------- ---------| -----(---- 361 ---------) -|-------- -------|-- -------(-- ---------- ---------- 421 -------)-- ---------- ---------- ---------- ---------- -----(---- 481 )---|----- --(-----)- ---------- ---------- ---------- -(------)- 541 ---------- ---------- ---- ---------- |------aac 841 uAA(AACA)U Uuuaa----- ---------- ---------- ---------- ---------- 901 ------(--- --)------- |ccu-ucuA- -GUAU-G(-G GUGA)CAGAA -caaua---- 961 -------<-- --acuca--- ---------- ---------- ---------- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- --->------ 1201 ---------- ---------- ---------- ---------< ---------- ---------- 1261 ---------- ---------- ---------> (------)-- ---------- ---|-(---) 1321 -------(-- -----)---- ---------- ---------- ---------- --<------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- >--------- ------(--- ---------- 1561 -------)-- ---------- ---------- -(-------) ---------- ---------- 1621 ---------- --AGAGCAAU AGCU-UA--- ---UGUACC( -GCAA-)GGA ---AAA-GC- 1681 UGaaaaagaa augaaauaaa ucauu----- ---------- ---------- ---------- 1741 ---------- -(-------) ---------- ---------- ---------- ---------- 1801 ---------- -----aaa-G U-AAAA GCAGAG---- --------<- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------> (--auuacac 2041 --)------- -----CUC-G UACCUU(UU- GCAUC)AUGA |UUU-AGCUA GAaaa--ac- 2101 uaggcgaaa- ---------- -------(-- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- -)-------- ---------- 2521 ----(----- )-----<--- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- agau->---- --(------) ---------- ---------- -cuuaagucu 2701 auc-cuCCCG AA-ACUAA-A CG-AGCUACU CCG-AAG-CA GC-------- ---------- 2761 -(-------- ---------- ---------- ---------- auuauuaga) ---------- 2821 ---GCUAA-C CC-GUCUCU( GUGGCAA-A) AGAG-UGGGA --AGACUUC- CGAGUAG-CG 2881 GU(G-AAAA) GCC-UACC-G A-GUUUAGUG AUAGCU-GGU UACCC--AAG AA-AAG-AAC 2941 (-UUUA)GUU CU-GC-AUUA ACU-<----- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ------->-- ---|------ 3061 -|------|- ---------- ---------- --------(- --------)< cuuuacuauc 3121 uaga-----c aagaauuucu cgucaaa--- ---------- ---------- ---------- 3181 ----gaaaac uauaag---- ---------- ---------- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---->----- ---------- 3301 ---------- ---------- ----|----- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ------ag-u -uaau-AGUU AUUUA--GA- AG-AG(-GUA 3481 CAG)CCCUUC UA-AA----- -CUAAG(AUA -CAU)CUU-u uaaag-a-ug -gg-AAA--- 3541 --ugaucaua auuauua-a- g-guuu---- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ------ccac c<-------- ---------- ---------- 3721 ---------- ---------- ---------- ---------- -->CCAGU-G GGC(CUAAAA 3781 GC-A)-GCCA -CCUG|u(u- aa)-|GUAAG C(--GUCGCA )GC|-ucca- gucu--<--- 3841 aacacuaaac cuauaauuua gauauuuac- ---------- ---------- ---------- 3901 ->-------- -------|-- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- ---------- 4021 ---------- ---------- ---------- ---------- ---------- ---------- 4081 -------|uc auaa--ccc| c--c-uu|-- ---------- ---------- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- ---------- ---------- ---------- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- --------(- 4441 ------)--- ---------- ----uauccu aUUGG-GU|- UA-UUUUAUA a--------- 4501 ---------- ---------- (aaa----)< ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ------->-- ---------- -|-------| UAUAAAAGAA CUUAUGC-UA 4681 AA|AUGAGUA -AUAA-AGA- ga-------- (-acaaauc- ---------- ---------- 4741 ---------- -----)---- ---uc-|ucc ----cg-ACA UAA--gugua c|----guca 4801 gaaa----ga ---------- ----(-auua aa)u-c|--a cugaca---- ---------- 4861 ---auuaau- -cga------ ---------- -------(-- ---------- ------)<-- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 >--------- ---------- ---------- ----(----- ---------- ---------- 5041 ---------- ---------- ----)----- |-----|--- ---------- |--<------ 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ---------- ---------- 5221 ---------- ---------- ---------- ---------- ---------- ---------- 5281 ---------- ---------- ---------- ---------- ---------- ---------- 5341 ---------- ---------- ---------- ---------- ---------- ---------- 5401 ---------- ---------- ------->-- ---------- ---------- ---------- 5461 -----(---- ------)--- ---|------ --------|- ---------- -(-----)-- 5521 |--------- ---------- ---------- -----(---- )--------- ---------- 5581 --<------- ---------- ---------- ---------- ---------- ---------- 5641 ---------- ---------- ------->-- ---------- ---------- ---<------ 5701 ---------- --ccccagac ugaggucauu auacuauuaa aucauuaacu agaaaaccuu 5761 auucuucuau ---------- ---------- ---------- ---------- ---------- 5821 ---------- ---------- ---------- ---------- ---------- ---------- 5881 ---------- ---------- ---------- ---------- ---------- ---------- 5941 ---------- ---------- ---------- ---------- ---------- ---------- 6001 ---------- ---------- ---------- ---------- ---------- ---------- 6061 ---------- ---------- ---------- ---------- ---------- ---------- 6121 ---------- ---------- ---------- ---------- ---------- ---------- 6181 ---------- ---------- ---------- ---------- ---------- ---------- 6241 ---------- ---------- ---------- ---------- ---------- ---------- 6301 ---------- ---------- ---------- ---------- ---------- ---------- 6361 ---------- ---------- ---------- ---------- ---------- ---------- 6421 ---------- ---------- ------>--- ---------- ---------- --ucgu-|-- 6481 ---UAAUCC- -(CACACA)G G|AAUGU--- ----(-cacc a-----)--- -----ggaa| 6541 |---AGAU-U A--AAAGAAA -AUAA-AGGA ACUCGGCAAA ---------- ----(----- 6601 )--------- ---|------ ---------- -----(---- ---)<----- ---------- 6661 ---------- ---------- ---------- ---------- ---------- ---------- 6721 ---------- ---------- ---------- ---------- --->------ ---------- 6781 ----|-(--- )--------c acAAACUC|C GC---CUG-U UU(ACCAA)A AA-CAUC-GC 6841 CUCUUG|--- ---------- ---------- (-uuaaauua ------)--- ---------- 6901 ---------- UAA-GAGGUC CCGCCU<--- ---------- ---------- ---------- 6961 ---------- ---------- -------->G CC-CU-GU|G AC-------- ---------- 7021 ---------- --(------- ---------- ---------- ---------- ---------- 7081 ---------- ---------- ---------a au-)------ ---------- ---------| 7141 ---GUUC-AA C-|GG-C|-C -GCGGU-(AU -UUUG)ACCG UG|C(AAA)- GG-UAGCGUA 7201 AUC-AU-U-U |GUCUUU(-U AAAU-)GAAG AC|CC-GUAU GAAAGGCACC A-CGAGAGUU 7261 UA-------- ---------- -------ACU GUCUCUAUUU UCUA-AU-CA ----AUGAAA 7321 UU|G|AUCUA UU-CG(U-GC AGAAG)CGAA UAU----AAU AACAUUAGAC GAGAAG-ACC 7381 CUAUGG-|-A GCUUU--AAA CA|--c-uua agu--ua--| <--------- ---------- 7441 ---------- ---------- --->------ ---------- ---------- ---------- 7501 ---------- ---------- ---------- --<------a uuauguaacc auuuauuccu 7561 cagggua-ua aacaaaauau auaauacuuc ---------- ---------- ---------- 7621 ---------- ---------- ---------> --(------- -)-------- ---------- 7681 ---------- -------|-- ---------- ---------- ---------- ---------- 7741 -----(---- ----)----- ---------- ---------- ---------- --------<- 7801 ---------- ---------- ---------- ---------- ---------- ---------- 7861 ---------- ---------- ---------- ---------- ---------- ---------- 7921 ---------- ---------- ---------- ---------- ---------- ---------- 7981 ---------- ---------- ---------- ---------- ---------- ---------- 8041 ---------- ---------- ---------- ---------- ---------- ---------- 8101 ---------- ---------- ----->---- --uaa-c-uu -aac--U-GU UUUUGGUUG( 8161 GGG)UG-AC- C|GAGGGG(- --------GA AAACAAAUC- )CCCC-UC|A |u|cg---|< 8221 ---------- ---------- ---------- ---------- ---------- ---------- 8281 ---------- ---------- ---------- ---------- ---------- ------auug 8341 aguacuca-- guacu----- ---------- ---------- ---------- ->-------- 8401 ---|------ ------<--- ---------- ---------- ---------- ---------- 8461 ---------- ---------- ---------- ---------- ---------- ---------- 8521 ---------- ---------- ---------- ---------- ---------- ---------- 8581 ---------- ---------- ---------- ---------- ---------- ---------- 8641 ---------- ---------> (--------- )--------- ---------- ---------- 8701 ---------- ---------- ---------- -------|-- (-|-----)- ---------- 8761 ------ugaa aauca-gaa( -uaacaa--- )uucug-auu aauaaaauau uuau------ 8821 ---------- ---------- ---------- ---------- ---------- ---------c 8881 g|---aaaaa UGACC-cagg ---------- ---------- ---(------ ---------- 8941 ---------- ---------- ---------- ---------- --------au uu)--|---c 9001 cugAUCAAU- |GAA-CCAAG UUACCC|UAG G|GAUAACAG |C-GCA-A-U CCUUUCUCAG 9061 AG(U--UCCU )AUCGAAGAA --AGGGUUUA CG-ACCUCGA UGUU|GG--A U|C|AGGAC| 9121 AU-CC-UAAU GG-UG(--CA -AC)CGCUAU UAAG-GGU|U CGUU(UGUUC )AACGA-UUA 9181 A-uAGUCCU- --ACGUGAUC UGAGUUCAGA CC|GG-A(GA AA)UCCAGGU CAGUUUCUAU 9241 CU|aug---- --|-|<---- ---------- ---------- ---------- -----aaua- 9301 >--------- ---------- -uA-CUU-UU CC--(UAGU- AC(-GAAA)G GACC-)GGAA 9361 A--AG-<--- ---------- ---------- -------->- uggggcc-aa ug-------- 9421 -|-------- (-----) 9541 ---------- ---------- cacg-cccca uu-------- ---------- -------uuc 9601 ---------- ---aucuauu (gaauaa--a acuua)a-au -ag-auaaga a--------- 9661 ---------- -------<-- ---------- ---------- ---------- ---------- 9721 ---------- ---------- ---------- ---------- ---------- ---------- 9781 ---------- ---------- ---------- ---------- ---------- ---------- 9841 ---------- ---------- ---------- ---------- ---------- ---------- 9901 --------aa gaucacccac u----->--| ------(--- )--------- -------|gc 9961 cc-(aaaaac a--)-ggguu ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10021 ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~~~ 10141 ~~~~~~~~~~ ~~~~~~~~~~ ~)~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10201 ~~~~~~~~~~ ~|~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10321 ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ||||| // LOCUS (12)-bony 10775 bp RNA RNA 09-JAN-1999 DEFINITION bony vertebrates. ACCESSION No information KEYWORDS No information. SOURCE bony vertebrates. ORGANISM bony vertebrates. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 10775) Corresponding GenBank entry: DIVIDER BASE COUNT 0 a 0 c 0 g 0 t 10775 others ORIGIN 1 |......... .......... .......... .......... .......... .......... 61 .......... .......... .......... .......... .......... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......... .......... .......... .......... 241 .......... .......... .......... .......... .......... .......... 301 .......... .......... .......... .......... .......... .......... 361 .......... .......... .......... .......... .......... .......... 421 .......... .......... .......... .......... .......... .......... 481 .......... .......... .......... .......... .......... .......... 541 .......... .......... .......... .......... .......... .......... 601 .......... .......... .......... .......... .......... .......... 661 .......... .......... .......... .......... .......... .......... 721 .......... .......... .......... .......... .......... .......... 781 .......... .......... .......... .......... .......... .......... 841 .......... .......... .......... .......... .......... .......... 901 .......... .......... .......... .......... .......... .......... 961 .......... .......... .......... .......... .......... .......... 1021 .......... .......... .......... .......... .......... .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .......... .......... .......... .......... .......... 1201 .......... .......... .......... .......... .......... .......... 1261 .......... .......... .......... .......... .......... .......... 1321 .......... .......... .......... .......... .......... .......... 1381 .......... .......... .......... .......... .......... .......... 1441 .......... .......... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... .......... .......... .......... .......... .......... 1621 .......... .......... .......... .......... .......... .......... 1681 .......... .......... .......... .......... .......... .......... 1741 .......... .......... .......... .......... .......... .......... 1801 .......... .......... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .......... .......... 1921 .......... .......... .......... .......... .......... .......... 1981 .......... .......... .......... .......... .......... .......... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... .......... .......... .......... .......... .......... 2161 .......... .......... .......... .......... .......... .......... 2221 .......... .......... .......... .......... .......... .......... 2281 .......... .......... .......... .......... .......... .......... 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... .......... 2701 .......... .......... .......... .......... .......... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... .......... 2881 .......... .......... .......... .......... .......... .......... 2941 .......... .......... .......... .......... .......... .......... 3001 .......... .......... .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .......... .......... 3181 .......... .......... .......... .......... .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .......... .......... .......... 3361 .......... .......... .......... .......... .......... .......... 3421 .......... .......... .......... .......... .......... .......... 3481 .......... .......... .......... .......... .......... .......... 3541 .......... .......... .......... .......... .......... .......... 3601 .......... .......... .......... .......... .......... .......... 3661 .......... .......... .......... .......... .......... .......... 3721 .......... .......... .......... .......... .......... .......... 3781 .....-.... .......... .......... .......... .......... .......... 3841 .......... .......... .......... .......... .......... .......... 3901 .......... .......... .......... .......... .......... .......... 3961 .......... .......... .......... .......... .......... .......... 4021 .......... .......... .......... .......... .......... .......... 4081 .......... .......... .......... .......... .......... .......... 4141 .......... .......... .......... .......... .......... .......... 4201 .......... .......... .......... .......... .......... .......... 4261 .......... .......... .......... .......... .......... .......... 4321 .......... .......... .......... .......... .......... .......... 4381 .......... .......... .......... .......... .......... .......... 4441 .......... .......... .......... .......... .......... .......... 4501 .......... .......... .......... .......... .......... .......... 4561 .......... .......... .......... .......... .......... .......... 4621 .......... .......... .......... .......... .......... .......... 4681 .......... .......... .......... .......... .......... .......... 4741 .......... .......... .......... .......... .......... .......... 4801 .......... .......... .......... ..)....... .......... .......... 4861 .......... .......... .......... .......... .......... .......... 4921 .......... .......... .......... .......... .......... .......... 4981 .......... .......... .......... .......... .......... .......... 5041 .......... .......... .......... .......... .......... .......... 5101 .......... .......... .......... .......... .......... .......... 5161 .......... .......... .......... .......... .......... .......... 5221 .......... .......... .......... .......... .......... .......... 5281 .......... .......... .......... .......... .......... .......... 5341 .......... .......... .......... .......... .......... .......... 5401 .......... .......... .......... .......... .......... .......... 5461 .......... .......... .......... .......... .......... .......... 5521 .......... .......... .......... .......... .......... .......... 5581 .......... .......... .......... .......... .......... .......... 5641 .......... .......... .......... .......... .......... .......... 5701 .......... .......... .......... .......... .......... .......... 5761 .......... .......... .......... .......... .......... .......... 5821 .......... .......... .......... .......... .......... .......... 5881 .......... .......... .......... .......... .......... .......... 5941 .......... .......... .......... .......... .......... .......... 6001 .......... .......... .......... .......... .......... .......... 6061 .......... .......... .......... .......... .......... .......... 6121 .......... .......... .......... .......... .......... .......... 6181 .......... .......... .......... .......... .......... .......... 6241 .......... .......... .......... .......... .......... .......... 6301 .......... .......... .......... .......... .......... .......... 6361 .......... .......... .......... .......... .......... .......... 6421 .......... .......... .......... .......... .......... .......... 6481 .......... .......... .......... .......... .......... .......... 6541 .......... .......... .......... .......... .......... .......... 6601 .......... .......... .......... .......... .......... .......... 6661 .......... .......... .......... .......... .......... .......... 6721 .......... .......... .......... .......... .......... .......... 6781 .......... .......... .......... .......... .......... .......... 6841 .......... .......... .......... .......... .......... .......... 6901 .......... .......... .......... .......... .......... .......... 6961 .......... .......... .......... .......... .......... .......... 7021 .......... .......... .......... .......... .......... .......... 7081 .......... .......... .......... .......... .......... .......... 7141 .......... .......... .......... .......... .......... .......... 7201 .......... .......... .......... .......... .......... .......... 7261 .......... .......... .......... .......... .......... .......... 7321 .......... .......... .......... .......... .......... .......... 7381 .......... .......... .......... .......... .......... .......... 7441 .......... .......... .......... .......... .......... .......... 7501 .......... .......... .......... .......... .......... .......... 7561 .......... .......... .......... .......... .......... .......... 7621 .......... .......... .......... .......... .......... .......... 7681 .......... .......... .......... .......... .......... .......... 7741 .......... .......... .......... .......... .......... .......... 7801 .......... .......... .......... .......... .......... .......... 7861 .......... .......... .......... .......... .......... .......... 7921 .......... .......... .......... .......... .......... .......... 7981 .......... .......... .......... .......... .......... .......... 8041 .......... .......... .......... .......... .......... .......... 8101 .......... .......... .......... .......... .......... .......... 8161 .......... .......... .......... .......... .......... .......... 8221 .......... .......... .......... .......... .......... .......... 8281 .......... .......... .......... .......... .......... .......... 8341 .......... .......... .......... .......... .......... .......... 8401 .......... .......... .......... .......... .......... .......... 8461 .......... .......... .......... .......... .......... .......... 8521 .......... .......... .......... .......... .......... .......... 8581 .......... .......... .......... .......... .......... .......... 8641 .......... .......... .......... .......... .......... .......... 8701 .......... .......... .......... .......... .......... .......... 8761 .......... .......... .......... .......... .......... .......... 8821 .......... .......... .......... .......... .......... .......... 8881 .......... .......... .......... .......... .......... .......... 8941 .......... .......... .......... .......... .......... .......... 9001 .......... .......... .......... .......... .......... .......... 9061 .......... .......... .......... .......... .......... .......... 9121 .......... .......... .......... .......... .......... .......... 9181 .......... .......... .......... .......... .......... .......... 9241 .......... .......... .......... .......... .......... .......... 9301 .......... .......... .......... .......... .......... .......... 9361 .......... .......... .......... .......... .......... .......... 9421 .......... .......... .......... .......... .......... .......... 9481 .......... .......... .......... .......... .......... .......... 9541 .......... .......... .......... .......... .......... .......... 9601 .......... .......... .......... .......... .......... .......... 9661 .......... .......... .......... .......... .......... .......... 9721 .......... .......... .......... .......... .......... .......... 9781 .......... .......... .......... .......... .......... .......... 9841 .......... .......... .......... .......... .......... .......... 9901 .......... .......... .......... .......... .......... .......... 9961 .......... .......... .......... .......... .......... .......... 10021 .......... .......... .......... .......... .......... .......... 10081 .......... .......... .......... .......... .......... .......... 10141 .......... .......... .......... .......... .......... .......... 10201 .......... .......... .......... .......... .......... .......... 10261 .......... .......... .......... .......... .......... .......... 10321 .......... .......... .......... .......... .......... .......... 10381 .......... .......... .......... .......... .......... .......... 10441 .......... .......... .......... .......... .......... .......... 10501 .......... .......... .......... .......... .......... .......... 10561 .......... .......... .......... .......... .......... .......... 10621 .......... .......... .......... .......... .......... .......... 10681 .......... .......... .......... .......... .......... .......... 10741 .......... .......... .......... ||||| // LOCUS (13)-Actin 10775 bp RNA RNA 09-JAN-1999 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 10775) Corresponding GenBank entry: DIVIDER BASE COUNT 0 a 0 c 0 g 0 t 10775 others ORIGIN 1 |......... .......... .......... .......... .......... .......... 61 .......... .......... .......... .......... .......... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......... .......... .......... .......... 241 .......... .......... .......... .......... .......... .......... 301 .......... .......... .......... .......... .......... .......... 361 .......... .......... .......... .......... .......... .......... 421 .......... .......... .......... .......... .......... .......... 481 .......... .......... .......... .......... .......... .......... 541 .......... .......... .......... .......... .......... .......... 601 .......... .......... .......... .......... .......... .......... 661 .......... .......... .......... .......... .......... .......... 721 .......... .......... .......... .......... .......... .......... 781 .......... .......... .......... .......... .......... .......... 841 .......... .......... .......... .......... .......... .......... 901 .......... .......... .......... .......... .......... .......... 961 .......... .......... .......... .......... .......... .......... 1021 .......... .......... .......... .......... .......... .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .......... .......... .......... .......... .......... 1201 .......... .......... .......... .......... .......... .......... 1261 .......... .......... .......... .......... .......... .......... 1321 .......... .......... .......... .......... .......... .......... 1381 .......... .......... .......... .......... .......... .......... 1441 .......... .......... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... .......... .......... .......... .......... .......... 1621 .......... .......... .......... .......... .......... .......... 1681 .......... .......... .......... .......... .......... .......... 1741 .......... .......... .......... .......... .......... .......... 1801 .......... .......... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .......... .......... 1921 .......... .......... .......... .......... .......... .......... 1981 .......... .......... .......... .......... .......... .......... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... .......... .......... .......... .......... .......... 2161 .......... .......... .......... .......... .......... .......... 2221 .......... .......... .......... .......... .......... .......... 2281 .......... .......... .......... .......... .......... .......... 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... .......... 2701 .......... .......... .......... .......... .......... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... .......... 2881 .......... .......... .......... .......... .......... .......... 2941 .......... .......... .......... .......... .......... .......... 3001 .......... .......... .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .......... .......... 3181 .......... .......... .......... .......... .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .......... .......... .......... 3361 .......... .......... .......... .......... .......... .......... 3421 .......... .......... .......... .......... .......... .......... 3481 .......... .......... .......... .......... .......... .......... 3541 .......... .......... .......... .......... .......... .......... 3601 .......... .......... .......... .......... .......... .......... 3661 .......... .......... .......... .......... .......... .......... 3721 .......... .......... .......... .......... .......... .......... 3781 .....-.... .......... .......... .......... .......... .......... 3841 .......... .......... .......... .......... .......... .......... 3901 .......... .......... .......... .......... .......... .......... 3961 .......... .......... .......... .......... .......... .......... 4021 .......... .......... .......... .......... .......... .......... 4081 .......... .......... .......... .......... .......... .......... 4141 .......... .......... .......... .......... .......... .......... 4201 .......... .......... .......... .......... .......... .......... 4261 .......... .......... .......... .......... .......... .......... 4321 .......... .......... .......... .......... .......... .......... 4381 .......... .......... .......... .......... .......... .......... 4441 .......... .......... .......... .......... .......... .......... 4501 .......... .......... .......... .......... .......... .......... 4561 .......... .......... .......... .......... .......... .......... 4621 .......... .......... .......... .......... .......... .......... 4681 .......... .......... .......... .......... .......... .......... 4741 .......... .......... .......... .......... .......... .......... 4801 .......... .......... .......... ..)....... .......... .......... 4861 .......... .......... .......... .......... .......... .......... 4921 .......... .......... .......... .......... .......... .......... 4981 .......... .......... .......... .......... .......... .......... 5041 .......... .......... .......... .......... .......... .......... 5101 .......... .......... .......... .......... .......... .......... 5161 .......... .......... .......... .......... .......... .......... 5221 .......... .......... .......... .......... .......... .......... 5281 .......... .......... .......... .......... .......... .......... 5341 .......... .......... .......... .......... .......... .......... 5401 .......... .......... .......... .......... .......... .......... 5461 .......... .......... .......... .......... .......... .......... 5521 .......... .......... .......... .......... .......... .......... 5581 .......... .......... .......... .......... .......... .......... 5641 .......... .......... .......... .......... .......... .......... 5701 .......... .......... .......... .......... .......... .......... 5761 .......... .......... .......... .......... .......... .......... 5821 .......... .......... .......... .......... .......... .......... 5881 .......... .......... .......... .......... .......... .......... 5941 .......... .......... .......... .......... .......... .......... 6001 .......... .......... .......... .......... .......... .......... 6061 .......... .......... .......... .......... .......... .......... 6121 .......... .......... .......... .......... .......... .......... 6181 .......... .......... .......... .......... .......... .......... 6241 .......... .......... .......... .......... .......... .......... 6301 .......... .......... .......... .......... .......... .......... 6361 .......... .......... .......... .......... .......... .......... 6421 .......... .......... .......... .......... .......... .......... 6481 .......... .......... .......... .......... .......... .......... 6541 .......... .......... .......... .......... .......... .......... 6601 .......... .......... .......... .......... .......... .......... 6661 .......... .......... .......... .......... .......... .......... 6721 .......... .......... .......... .......... .......... .......... 6781 .......... .......... .......... .......... .......... .......... 6841 .......... .......... .......... .......... .......... .......... 6901 .......... .......... .......... .......... .......... .......... 6961 .......... .......... .......... .......... .......... .......... 7021 .......... .......... .......... .......... .......... .......... 7081 .......... .......... .......... .......... .......... .......... 7141 .......... .......... .......... .......... .......... .......... 7201 .......... .......... .......... .......... .......... .......... 7261 .......... .......... .......... .......... .......... .......... 7321 .......... .......... .......... .......... .......... .......... 7381 .......... .......... .......... .......... .......... .......... 7441 .......... .......... .......... .......... .......... .......... 7501 .......... .......... .......... .......... .......... .......... 7561 .......... .......... .......... .......... .......... .......... 7621 .......... .......... .......... .......... .......... .......... 7681 .......... .......... .......... .......... .......... .......... 7741 .......... .......... .......... .......... .......... .......... 7801 .......... .......... .......... .......... .......... .......... 7861 .......... .......... .......... .......... .......... .......... 7921 .......... .......... .......... .......... .......... .......... 7981 .......... .......... .......... .......... .......... .......... 8041 .......... .......... .......... .......... .......... .......... 8101 .......... .......... .......... .......... .......... .......... 8161 .......... .......... .......... .......... .......... .......... 8221 .......... .......... .......... .......... .......... .......... 8281 .......... .......... .......... .......... .......... .......... 8341 .......... .......... .......... .......... .......... .......... 8401 .......... .......... .......... .......... .......... .......... 8461 .......... .......... .......... .......... .......... .......... 8521 .......... .......... .......... .......... .......... .......... 8581 .......... .......... .......... .......... .......... .......... 8641 .......... .......... .......... .......... .......... .......... 8701 .......... .......... .......... .......... .......... .......... 8761 .......... .......... .......... .......... .......... .......... 8821 .......... .......... .......... .......... .......... .......... 8881 .......... .......... .......... .......... .......... .......... 8941 .......... .......... .......... .......... .......... .......... 9001 .......... .......... .......... .......... .......... .......... 9061 .......... .......... .......... .......... .......... .......... 9121 .......... .......... .......... .......... .......... .......... 9181 .......... .......... .......... .......... .......... .......... 9241 .......... .......... .......... .......... .......... .......... 9301 .......... .......... .......... .......... .......... .......... 9361 .......... .......... .......... .......... .......... .......... 9421 .......... .......... .......... .......... .......... .......... 9481 .......... .......... .......... .......... .......... .......... 9541 .......... .......... .......... .......... .......... .......... 9601 .......... .......... .......... .......... .......... .......... 9661 .......... .......... .......... .......... .......... .......... 9721 .......... .......... .......... .......... .......... .......... 9781 .......... .......... .......... .......... .......... .......... 9841 .......... .......... .......... .......... .......... .......... 9901 .......... .......... .......... .......... .......... .......... 9961 .......... .......... .......... .......... .......... .......... 10021 .......... .......... .......... .......... .......... .......... 10081 .......... .......... .......... .......... .......... .......... 10141 .......... .......... .......... .......... .......... .......... 10201 .......... .......... .......... .......... .......... .......... 10261 .......... .......... .......... .......... .......... .......... 10321 .......... .......... .......... .......... .......... .......... 10381 .......... .......... .......... .......... .......... .......... 10441 .......... .......... .......... .......... .......... .......... 10501 .......... .......... .......... .......... .......... .......... 10561 .......... .......... .......... .......... .......... .......... 10621 .......... .......... .......... .......... .......... .......... 10681 .......... .......... .......... .......... .......... .......... 10741 .......... .......... .......... ||||| // LOCUS (14)-CHOND 10775 bp RNA RNA 09-JAN-1999 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 10775) Corresponding GenBank entry: DIVIDER BASE COUNT 0 a 0 c 0 g 0 t 10775 others ORIGIN 1 |......... .......... .......... .......... .......... .......... 61 .......... .......... .......... .......... .......... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......... .......... .......... .......... 241 .......... .......... .......... .......... .......... .......... 301 .......... .......... .......... .......... .......... .......... 361 .......... .......... .......... .......... .......... .......... 421 .......... .......... .......... .......... .......... .......... 481 .......... .......... .......... .......... .......... .......... 541 .......... .......... .......... .......... .......... .......... 601 .......... .......... .......... .......... .......... .......... 661 .......... .......... .......... .......... .......... .......... 721 .......... .......... .......... .......... .......... .......... 781 .......... .......... .......... .......... .......... .......... 841 .......... .......... .......... .......... .......... .......... 901 .......... .......... .......... .......... .......... .......... 961 .......... .......... .......... .......... .......... .......... 1021 .......... .......... .......... .......... .......... .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .......... .......... .......... .......... .......... 1201 .......... .......... .......... .......... .......... .......... 1261 .......... .......... .......... .......... .......... .......... 1321 .......... .......... .......... .......... .......... .......... 1381 .......... .......... .......... .......... .......... .......... 1441 .......... .......... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... .......... .......... .......... .......... .......... 1621 .......... .......... .......... .......... .......... .......... 1681 .......... .......... .......... .......... .......... .......... 1741 .......... .......... .......... .......... .......... .......... 1801 .......... .......... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .......... .......... 1921 .......... .......... .......... .......... .......... .......... 1981 .......... .......... .......... .......... .......... .......... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... .......... .......... .......... .......... .......... 2161 .......... .......... .......... .......... .......... .......... 2221 .......... .......... .......... .......... .......... .......... 2281 .......... .......... .......... .......... .......... .......... 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... .......... 2701 .......... .......... .......... .......... .......... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... .......... 2881 .......... .......... .......... .......... .......... .......... 2941 .......... .......... .......... .......... .......... .......... 3001 .......... .......... .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .......... .......... 3181 .......... .......... .......... .......... .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .......... .......... .......... 3361 .......... .......... .......... .......... .......... .......... 3421 .......... .......... .......... .......... .......... .......... 3481 .......... .......... .......... .......... .......... .......... 3541 .......... .......... .......... .......... .......... .......... 3601 .......... .......... .......... .......... .......... .......... 3661 .......... .......... .......... .......... .......... .......... 3721 .......... .......... .......... .......... .......... .......... 3781 .....-.... .......... .......... .......... .......... .......... 3841 .......... .......... .......... .......... .......... .......... 3901 .......... .......... .......... .......... .......... .......... 3961 .......... .......... .......... .......... .......... .......... 4021 .......... .......... .......... .......... .......... .......... 4081 .......... .......... .......... .......... .......... .......... 4141 .......... .......... .......... .......... .......... .......... 4201 .......... .......... .......... .......... .......... .......... 4261 .......... .......... .......... .......... .......... .......... 4321 .......... .......... .......... .......... .......... .......... 4381 .......... .......... .......... .......... .......... .......... 4441 .......... .......... .......... .......... .......... .......... 4501 .......... .......... .......... .......... .......... .......... 4561 .......... .......... .......... .......... .......... .......... 4621 .......... .......... .......... .......... .......... .......... 4681 .......... .......... .......... .......... .......... .......... 4741 .......... .......... .......... .......... .......... .......... 4801 .......... .......... .......... ..)....... .......... .......... 4861 .......... .......... .......... .......... .......... .......... 4921 .......... .......... .......... .......... .......... .......... 4981 .......... .......... .......... .......... .......... .......... 5041 .......... .......... .......... .......... .......... .......... 5101 .......... .......... .......... .......... .......... .......... 5161 .......... .......... .......... .......... .......... .......... 5221 .......... .......... .......... .......... .......... .......... 5281 .......... .......... .......... .......... .......... .......... 5341 .......... .......... .......... .......... .......... .......... 5401 .......... .......... .......... .......... .......... .......... 5461 .......... .......... .......... .......... .......... .......... 5521 .......... .......... .......... .......... .......... .......... 5581 .......... .......... .......... .......... .......... .......... 5641 .......... .......... .......... .......... .......... .......... 5701 .......... .......... .......... .......... .......... .......... 5761 .......... .......... .......... .......... .......... .......... 5821 .......... .......... .......... .......... .......... .......... 5881 .......... .......... .......... .......... .......... .......... 5941 .......... .......... .......... .......... .......... .......... 6001 .......... .......... .......... .......... .......... .......... 6061 .......... .......... .......... .......... .......... .......... 6121 .......... .......... .......... .......... .......... .......... 6181 .......... .......... .......... .......... .......... .......... 6241 .......... .......... .......... .......... .......... .......... 6301 .......... .......... .......... .......... .......... .......... 6361 .......... .......... .......... .......... .......... .......... 6421 .......... .......... .......... .......... .......... .......... 6481 .......... .......... .......... .......... .......... .......... 6541 .......... .......... .......... .......... .......... .......... 6601 .......... .......... .......... .......... .......... .......... 6661 .......... .......... .......... .......... .......... .......... 6721 .......... .......... .......... .......... .......... .......... 6781 .......... .......... .......... .......... .......... .......... 6841 .......... .......... .......... .......... .......... .......... 6901 .......... .......... .......... .......... .......... .......... 6961 .......... .......... .......... .......... .......... .......... 7021 .......... .......... .......... .......... .......... .......... 7081 .......... .......... .......... .......... .......... .......... 7141 .......... .......... .......... .......... .......... .......... 7201 .......... .......... .......... .......... .......... .......... 7261 .......... .......... .......... .......... .......... .......... 7321 .......... .......... .......... .......... .......... .......... 7381 .......... .......... .......... .......... .......... .......... 7441 .......... .......... .......... .......... .......... .......... 7501 .......... .......... .......... .......... .......... .......... 7561 .......... .......... .......... .......... .......... .......... 7621 .......... .......... .......... .......... .......... .......... 7681 .......... .......... .......... .......... .......... .......... 7741 .......... .......... .......... .......... .......... .......... 7801 .......... .......... .......... .......... .......... .......... 7861 .......... .......... .......... .......... .......... .......... 7921 .......... .......... .......... .......... .......... .......... 7981 .......... .......... .......... .......... .......... .......... 8041 .......... .......... .......... .......... .......... .......... 8101 .......... .......... .......... .......... .......... .......... 8161 .......... .......... .......... .......... .......... .......... 8221 .......... .......... .......... .......... .......... .......... 8281 .......... .......... .......... .......... .......... .......... 8341 .......... .......... .......... .......... .......... .......... 8401 .......... .......... .......... .......... .......... .......... 8461 .......... .......... .......... .......... .......... .......... 8521 .......... .......... .......... .......... .......... .......... 8581 .......... .......... .......... .......... .......... .......... 8641 .......... .......... .......... .......... .......... .......... 8701 .......... .......... .......... .......... .......... .......... 8761 .......... .......... .......... .......... .......... .......... 8821 .......... .......... .......... .......... .......... .......... 8881 .......... .......... .......... .......... .......... .......... 8941 .......... .......... .......... .......... .......... .......... 9001 .......... .......... .......... .......... .......... .......... 9061 .......... .......... .......... .......... .......... .......... 9121 .......... .......... .......... .......... .......... .......... 9181 .......... .......... .......... .......... .......... .......... 9241 .......... .......... .......... .......... .......... .......... 9301 .......... .......... .......... .......... .......... .......... 9361 .......... .......... .......... .......... .......... .......... 9421 .......... .......... .......... .......... .......... .......... 9481 .......... .......... .......... .......... .......... .......... 9541 .......... .......... .......... .......... .......... .......... 9601 .......... .......... .......... .......... .......... .......... 9661 .......... .......... .......... .......... .......... .......... 9721 .......... .......... .......... .......... .......... .......... 9781 .......... .......... .......... .......... .......... .......... 9841 .......... .......... .......... .......... .......... .......... 9901 .......... .......... .......... .......... .......... .......... 9961 .......... .......... .......... .......... .......... .......... 10021 .......... .......... .......... .......... .......... .......... 10081 .......... .......... .......... .......... .......... .......... 10141 .......... .......... .......... .......... .......... .......... 10201 .......... .......... .......... .......... .......... .......... 10261 .......... .......... .......... .......... .......... .......... 10321 .......... .......... .......... .......... .......... .......... 10381 .......... .......... .......... .......... .......... .......... 10441 .......... .......... .......... .......... .......... .......... 10501 .......... .......... .......... .......... .......... .......... 10561 .......... .......... .......... .......... .......... .......... 10621 .......... .......... .......... .......... .......... .......... 10681 .......... .......... .......... .......... .......... .......... 10741 .......... .......... .......... ||||| // LOCUS mt.P.ornat 10775 bp RNA RNA 09-NOV-1996 DEFINITION Mitochondria Polypterus ornatipinnis.; . ACCESSION U62532 KEYWORDS . SOURCE Mitochondria Polypterus ornatipinnis. ORGANISM Mitochondria Polypterus ornatipinnis. REFERENCE 1 (bases 1 to 16624) AUTHORS Noack,K., Zardoya,R. and Meyer,A. TITLE (Polypterus ornatipinnis), a basal ray-finned fish: Ancient establishment of the consensus vertebrate gene order The complete mitochondrial DNA sequence of the bichir JOURNAL Genetics 144 (3), 1165-1180 (1996) STANDARD No information REFERENCE 2 (bases 1 to 16624) AUTHORS Noack,K., Zardoya,R. and Meyer,A. TITLE Direct Submission JOURNAL Submitted (28-JUN-1996) Ecology & Evolution, State University of New York at Stony Brook, 661 Life Sciences, Stony Brook, NY 11794-5245, USA STANDARD No information COMMENTS Sequence information (bases 1 to 10775) Corresponding GenBank entry: U62532 BASE COUNT 603 a 347 c 315 g 390 t 9120 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~G C--------- ----auuaua 301 |gcu--agc| cu-------- -|-------- ---------- ---------| -----(---- 361 ---------) -|-------- -------|-- -------(-- ---------- ---------- 421 -------)-- ---------- ---------- ---------- ---------- -----(---- 481 )---|----- --(-----)- ---------- ---------- ---------- -(------)- 541 ---------- ---------- ---- ---------- |-------aa 841 cAA(AACA)U Uug------- ---------- ---------- ---------- --------uu 901 ------(--- --)------- |aac-uucA- -GUAU-A(-G GCGA)UAGAA -agaga---- 961 -------<-- --acaa---- ---------- ---------- ---------- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- --->------ 1201 ---------- ---------- ---------- ---------< ---------- ---------- 1261 ---------- ---------- ---------> (------)-- ---------- ---|-(---) 1321 -------(-- -----)---- ---------- ---------- ---------- --<------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- >--------- ------(--- ---------- 1561 -------)-- ---------- ---------- -(-------) ---------- ---------- 1621 ---------- A-AGAGCUAU AGCA-AC--- ---AGUACC( -GCAA-)GGG ---AAA-GC- 1681 ugaaagagaa augaaacaaa ucguu----- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- -----aaa-G C-CAUA GCAGAG---- --------<- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------> (--auuaaau 2041 --)------- -----CUC-G UACCUU(UU- GCAUC)AUGA |UCU-AGUAA GUaag--cc- 2101 caagcaaaa- ---------- -------(-- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- -)-------- ---------- 2521 ----(----- )-----<--- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ugau->---- --(------) ---------- ---------- -uuauaguuu 2701 gac-ccccCG AA-ACUAG-A CG-AGCUACU UCG-AGG-CA GUU------- ---------- 2761 -(-------- ---------- ---------- ---------- ----gaaag) ---------- 2821 --GACCAC-C CC-GUCUCU( GUGGAAA-A) AGAG-UGGGA --AGACUUC- CAAGUAG-AG 2881 GU(G-ACAA) GCC-UAAC-G A-GCCUAGUG AUAGCU-GGU UACUU--GAG AA-AUG-GAU 2941 (-AAAA)GUC CA-GC-CUCA AAAU<----- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ------->-- ---|------ 3061 -|------|- ---------- ---------- --------(- --------)< uucuaaaaaa 3121 uaua-----c aaauuccguu uaaaaaa--- ---------- ---------- ---------- 3181 ----uu--uu aag--aa--- ---------- ---------- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---->----- ---------- 3301 ---------- ---------- ----|----- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- -----cAU-U -UGAG-AGUU AUUCA--cA- GG-AG(-GUA 3481 CAG)CUCCUA UG-AA----- -cuGGG(AAA -CAA)CCC-a auaag-g-ag -ga-AAA--- 3541 --agaucaua auuuaca-a- ggacaa---- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ------aauc c<-------- ---------- ---------- 3721 ---------- ---------- ---------- ---------- -->-AAGU-G GGC(CUGAAA 3781 GC-A)-GCCA -CCUU|-(ua -a)a|GAAAG C(--GUUAUA )GC|-UUAa- auaa--<--- 3841 --uauauuau uccguauauc cggauaaaa- ---------- ---------- ---------- 3901 ->-------- -------|-- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- ---------- 4021 ---------- ---------- ---------- ---------- ---------- ---------- 4081 -------|uc ucugaaucc| c--c-ua|-- ---------- ---------- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- ---------- ---------- ---------- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- caaau-AU|- CA-AGUUAUU ---------- 4501 ---------- ---------- (cuauuug)< ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ------->-- ---------- ---------| AGUAGAAGAA AUUAUGC-UA 4681 GA|ACUAGUA -AUAA-GAA- aaa------- (-u-g-auu- ---------- ---------- 4741 ---------- -----)---- ---uuc|ucc u----a-GCA CAA--gugua a|----guua 4801 gaac----gg ---------- ----(--aca aa)c-c|--a cuaaca---- ---------- 4861 ---auuaga- -cga------ ---------- -------(-- ---------- ------)<-- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 >--------- ---------- ---------- ----(----- ---------- ---------- 5041 ---------- ---------- ----)----- |-----|--- ---------- |--<------ 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ---------- ---------- 5221 ---------- ---------- ---------- ---------- ---------- ---------- 5281 ---------- ---------- ---------- ---------- ---------- ---------- 5341 ---------- ---------- ---------- ---------- ---------- ---------- 5401 ---------- ---------- ------->-- ---------- ---------- ---------- 5461 -----(---- ------)--- ---|------ --------|- ---------- -(-----)-- 5521 |--------- ---------- ---------- -----(---- )--------- ---------- 5581 --<------- ---------- ---------- ---------- ---------- ---------- 5641 ---------- ---------- ------->-- ---------- ---------- ---<------ 5701 ---------- acccaacaga gggccaaaua acgccuauaa uaaaaacaag aaaacccuau 5761 uaaucuua-- ---------- ---------- ---------- ---------- ---------- 5821 ---------- ---------- ---------- ---------- ---------- ---------- 5881 ---------- ---------- ---------- ---------- ---------- ---------- 5941 ---------- ---------- ---------- ---------- ---------- ---------- 6001 ---------- ---------- ---------- ---------- ---------- ---------- 6061 ---------- ---------- ---------- ---------- ---------- ---------- 6121 ---------- ---------- ---------- ---------- ---------- ---------- 6181 ---------- ---------- ---------- ---------- ---------- ---------- 6241 ---------- ---------- ---------- ---------- ---------- ---------- 6301 ---------- ---------- ---------- ---------- ---------- ---------- 6361 ---------- ---------- ---------- ---------- ---------- ---------- 6421 ---------- ---------- ------>--- ---------- ---------- --ucgu-|-- 6481 ---AAAUCU- -(UACACA)A G|AGUGC--- ----(cuaa- ------)--- ----aggaa| 6541 |---AGAC-U A--AAAGAGA -AAAA-AGGA ACUCGGCAAA ---------- ---------- 6601 ---------- ---------- ---------- ---------- ---------- ---------- 6661 ---------- ---------- ---------- ---------- ---------- ---------- 6721 ---------- ---------- ---------- ---------- ---------- ---------- 6781 ------(--- )--------u ccGAGCCC|C GC---CUG-U UU(ACCAA)A AA-CAUC-GC 6841 CUUCAG|C-- ---------- ---------- (--uuuucau ------)--- ---------- 6901 ------GUA- UUG-AAGGUC CUGCCU<--- ---------- ---------- ---------- 6961 ---------- ---------- -------->G CC-CA-GU|G AC-------- ---------- 7021 ---------- --(------- ---------- ---------- ---------- ---------- 7081 ---------- ---------- ---------a uga)------ ---------- ---------| 7141 ---GUUU-AA C-|GG-C|-C -GCGGU-(AU -CCUG)ACCG UG|C(AAA)- GG-UAGCGUA 7201 AUC-AC-U-U |GUUCUU(-U AAAU-)GAGG AC|UG-GUAU GAAUGGCCCC A-CGAGGGCU 7261 CA-------- ---------- -------ACU GUCUCuuuuu cuccgGU-CA ----AUUAAA 7321 CU|G|AUCUC CCCUG(U-GC AGAAG)CGGG CAU----AAA GACAUAAGAC GAGAAG-ACC 7381 CUGUGG-|-A GCUUU--AGA CU|--a-aau ccaa---a-| <--------- ---------- 7441 ---------- ---------- --->------ ---------- ---------- ---------- 7501 ---------- ---------- ---------- --<------- -cacuccuca cuauauuuua 7561 ccgu--aua- -gac--aaac acagcgu--- ---------- ---------- ---------- 7621 ---------- ---------- ---------- ---------- ---------- ---------- 7681 ---------- ---------- ---------- ---------- ---------- ---------- 7741 ---------- ---------- ---------- ---------- ---------- ---------- 7801 ---------- ---------- ---------- ---------- ---------- ---------- 7861 ---------- ---------- ---------- ---------- ---------- ---------- 7921 ---------- ---------- ---------- ---------- ---------- ---------- 7981 ---------- ---------- ---------- ---------- ---------- ---------- 8041 ---------- ---------- ---------- ---------- ---------- ---------- 8101 ---------- ---------- ---------- --uau-g-gc caua-aA-GU CUUAGGUUG( 8161 GGG)CG-AC- C|ACUGAG(- --------AA CAAAUAAUC- )CUCA-GC|G |a|ug---|< 8221 ---------- ---------- ---------- ---------- ---------- ---------- 8281 ---------- ---------- ---------- ---------- ---------- ------auug 8341 aagcacagcu uuau------ ---------- ---------- ---------- ->-------- 8401 ---------- ---------- ---------- ---------- ---------- ---------- 8461 ---------- ---------- ---------- ---------- ---------- ---------- 8521 ---------- ---------- ---------- ---------- ---------- ---------- 8581 ---------- ---------- ---------- ---------- ---------- ---------- 8641 ---------- ---------- ---------- ---------- ---------- ---------- 8701 ---------- ---------- ---------- ---------- --|------- ---------- 8761 --------aa acuaa-gaa( -ugacaa--- )uucaa-agc -aucaggaca ccug------ 8821 ---------- ---------- ---------- ---------- ---------- --------ac 8881 a|---uu-ag -GAUC-caga ---------- ---------- ---(------ ---------- 8941 ---------- ---------- ---------- ---------- --------cu aa)--|---u 9001 cugAUCAAC- |GAA-CCAAG UUACCC|CAG G|GAUAACAG |C-GCA-A-U CUUUUCCAAG 9061 AG(C--CCAA )AUCGACGAA --AAGGUUUA CG-ACCUCGA UGUU|GG--A U|C|AGGAC| 9121 AU-CC-UAAU GG-UG(--CA -UC)CGCUAU UAAG-GGU|U CGUU(UGUUC )AGCGA-UUA 9181 A--AGUCCU- --ACGUGAUC UGAGUUCAGA CC|GG-A(GC AA)UCCAGGU CAGUUUCUAU 9241 CU|AUG---- --|-|<---- ---------- ---------- ---------- ---u-aguc- 9301 >--------- ---------- --A-UUU-AU CC--(UAGU- AC(-GAAA)G GAUU-)GGAU 9361 A--AA-- ggggccu-au au-------- 9421 -|-------- (-----) 9541 ---------- ---------- acac-gcccc cuu------- ---------- -------uua 9601 ---------- ---accuacu (gaagcc--a aauca)a-gu -ag-auaaua aa-------- 9661 ---------- ---------| ------(--- )--------- -------|gc 9961 cc-(uagaac a--)-ggguu a~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10021 ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~~~ 10141 ~~~~~~~~~~ ~~~~~~~~~~ ~)~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10201 ~~~~~~~~~~ ~|~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10321 ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ||||| // LOCUS (14)-Neopt 10775 bp RNA RNA 09-JAN-1999 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 10775) Corresponding GenBank entry: DIVIDER BASE COUNT 0 a 0 c 0 g 0 t 10775 others ORIGIN 1 |......... .......... .......... .......... .......... .......... 61 .......... .......... .......... .......... .......... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......... .......... .......... .......... 241 .......... .......... .......... .......... .......... .......... 301 .......... .......... .......... .......... .......... .......... 361 .......... .......... .......... .......... .......... .......... 421 .......... .......... .......... .......... .......... .......... 481 .......... .......... .......... .......... .......... .......... 541 .......... .......... .......... .......... .......... .......... 601 .......... .......... .......... .......... .......... .......... 661 .......... .......... .......... .......... .......... .......... 721 .......... .......... .......... .......... .......... .......... 781 .......... .......... .......... .......... .......... .......... 841 .......... .......... .......... .......... .......... .......... 901 .......... .......... .......... .......... .......... .......... 961 .......... .......... .......... .......... .......... .......... 1021 .......... .......... .......... .......... .......... .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .......... .......... .......... .......... .......... 1201 .......... .......... .......... .......... .......... .......... 1261 .......... .......... .......... .......... .......... .......... 1321 .......... .......... .......... .......... .......... .......... 1381 .......... .......... .......... .......... .......... .......... 1441 .......... .......... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... .......... .......... .......... .......... .......... 1621 .......... .......... .......... .......... .......... .......... 1681 .......... .......... .......... .......... .......... .......... 1741 .......... .......... .......... .......... .......... .......... 1801 .......... .......... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .......... .......... 1921 .......... .......... .......... .......... .......... .......... 1981 .......... .......... .......... .......... .......... .......... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... .......... .......... .......... .......... .......... 2161 .......... .......... .......... .......... .......... .......... 2221 .......... .......... .......... .......... .......... .......... 2281 .......... .......... .......... .......... .......... .......... 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... .......... 2701 .......... .......... .......... .......... .......... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... .......... 2881 .......... .......... .......... .......... .......... .......... 2941 .......... .......... .......... .......... .......... .......... 3001 .......... .......... .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .......... .......... 3181 .......... .......... .......... .......... .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .......... .......... .......... 3361 .......... .......... .......... .......... .......... .......... 3421 .......... .......... .......... .......... .......... .......... 3481 .......... .......... .......... .......... .......... .......... 3541 .......... .......... .......... .......... .......... .......... 3601 .......... .......... .......... .......... .......... .......... 3661 .......... .......... .......... .......... .......... .......... 3721 .......... .......... .......... .......... .......... .......... 3781 .....-.... .......... .......... .......... .......... .......... 3841 .......... .......... .......... .......... .......... .......... 3901 .......... .......... .......... .......... .......... .......... 3961 .......... .......... .......... .......... .......... .......... 4021 .......... .......... .......... .......... .......... .......... 4081 .......... .......... .......... .......... .......... .......... 4141 .......... .......... .......... .......... .......... .......... 4201 .......... .......... .......... .......... .......... .......... 4261 .......... .......... .......... .......... .......... .......... 4321 .......... .......... .......... .......... .......... .......... 4381 .......... .......... .......... .......... .......... .......... 4441 .......... .......... .......... .......... .......... .......... 4501 .......... .......... .......... .......... .......... .......... 4561 .......... .......... .......... .......... .......... .......... 4621 .......... .......... .......... .......... .......... .......... 4681 .......... .......... .......... .......... .......... .......... 4741 .......... .......... .......... .......... .......... .......... 4801 .......... .......... .......... ..)....... .......... .......... 4861 .......... .......... .......... .......... .......... .......... 4921 .......... .......... .......... .......... .......... .......... 4981 .......... .......... .......... .......... .......... .......... 5041 .......... .......... .......... .......... .......... .......... 5101 .......... .......... .......... .......... .......... .......... 5161 .......... .......... .......... .......... .......... .......... 5221 .......... .......... .......... .......... .......... .......... 5281 .......... .......... .......... .......... .......... .......... 5341 .......... .......... .......... .......... .......... .......... 5401 .......... .......... .......... .......... .......... .......... 5461 .......... .......... .......... .......... .......... .......... 5521 .......... .......... .......... .......... .......... .......... 5581 .......... .......... .......... .......... .......... .......... 5641 .......... .......... .......... .......... .......... .......... 5701 .......... .......... .......... .......... .......... .......... 5761 .......... .......... .......... .......... .......... .......... 5821 .......... .......... .......... .......... .......... .......... 5881 .......... .......... .......... .......... .......... .......... 5941 .......... .......... .......... .......... .......... .......... 6001 .......... .......... .......... .......... .......... .......... 6061 .......... .......... .......... .......... .......... .......... 6121 .......... .......... .......... .......... .......... .......... 6181 .......... .......... .......... .......... .......... .......... 6241 .......... .......... .......... .......... .......... .......... 6301 .......... .......... .......... .......... .......... .......... 6361 .......... .......... .......... .......... .......... .......... 6421 .......... .......... .......... .......... .......... .......... 6481 .......... .......... .......... .......... .......... .......... 6541 .......... .......... .......... .......... .......... .......... 6601 .......... .......... .......... .......... .......... .......... 6661 .......... .......... .......... .......... .......... .......... 6721 .......... .......... .......... .......... .......... .......... 6781 .......... .......... .......... .......... .......... .......... 6841 .......... .......... .......... .......... .......... .......... 6901 .......... .......... .......... .......... .......... .......... 6961 .......... .......... .......... .......... .......... .......... 7021 .......... .......... .......... .......... .......... .......... 7081 .......... .......... .......... .......... .......... .......... 7141 .......... .......... .......... .......... .......... .......... 7201 .......... .......... .......... .......... .......... .......... 7261 .......... .......... .......... .......... .......... .......... 7321 .......... .......... .......... .......... .......... .......... 7381 .......... .......... .......... .......... .......... .......... 7441 .......... .......... .......... .......... .......... .......... 7501 .......... .......... .......... .......... .......... .......... 7561 .......... .......... .......... .......... .......... .......... 7621 .......... .......... .......... .......... .......... .......... 7681 .......... .......... .......... .......... .......... .......... 7741 .......... .......... .......... .......... .......... .......... 7801 .......... .......... .......... .......... .......... .......... 7861 .......... .......... .......... .......... .......... .......... 7921 .......... .......... .......... .......... .......... .......... 7981 .......... .......... .......... .......... .......... .......... 8041 .......... .......... .......... .......... .......... .......... 8101 .......... .......... .......... .......... .......... .......... 8161 .......... .......... .......... .......... .......... .......... 8221 .......... .......... .......... .......... .......... .......... 8281 .......... .......... .......... .......... .......... .......... 8341 .......... .......... .......... .......... .......... .......... 8401 .......... .......... .......... .......... .......... .......... 8461 .......... .......... .......... .......... .......... .......... 8521 .......... .......... .......... .......... .......... .......... 8581 .......... .......... .......... .......... .......... .......... 8641 .......... .......... .......... .......... .......... .......... 8701 .......... .......... .......... .......... .......... .......... 8761 .......... .......... .......... .......... .......... .......... 8821 .......... .......... .......... .......... .......... .......... 8881 .......... .......... .......... .......... .......... .......... 8941 .......... .......... .......... .......... .......... .......... 9001 .......... .......... .......... .......... .......... .......... 9061 .......... .......... .......... .......... .......... .......... 9121 .......... .......... .......... .......... .......... .......... 9181 .......... .......... .......... .......... .......... .......... 9241 .......... .......... .......... .......... .......... .......... 9301 .......... .......... .......... .......... .......... .......... 9361 .......... .......... .......... .......... .......... .......... 9421 .......... .......... .......... .......... .......... .......... 9481 .......... .......... .......... .......... .......... .......... 9541 .......... .......... .......... .......... .......... .......... 9601 .......... .......... .......... .......... .......... .......... 9661 .......... .......... .......... .......... .......... .......... 9721 .......... .......... .......... .......... .......... .......... 9781 .......... .......... .......... .......... .......... .......... 9841 .......... .......... .......... .......... .......... .......... 9901 .......... .......... .......... .......... .......... .......... 9961 .......... .......... .......... .......... .......... .......... 10021 .......... .......... .......... .......... .......... .......... 10081 .......... .......... .......... .......... .......... .......... 10141 .......... .......... .......... .......... .......... .......... 10201 .......... .......... .......... .......... .......... .......... 10261 .......... .......... .......... .......... .......... .......... 10321 .......... .......... .......... .......... .......... .......... 10381 .......... .......... .......... .......... .......... .......... 10441 .......... .......... .......... .......... .......... .......... 10501 .......... .......... .......... .......... .......... .......... 10561 .......... .......... .......... .......... .......... .......... 10621 .......... .......... .......... .......... .......... .......... 10681 .......... .......... .......... .......... .......... .......... 10741 .......... .......... .......... ||||| // LOCUS (15)-TELEO 10775 bp RNA RNA 09-JAN-1999 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 10775) Corresponding GenBank entry: DIVIDER BASE COUNT 0 a 0 c 0 g 0 t 10775 others ORIGIN 1 |......... .......... .......... .......... .......... .......... 61 .......... .......... .......... .......... .......... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......... .......... .......... .......... 241 .......... .......... .......... .......... .......... .......... 301 .......... .......... .......... .......... .......... .......... 361 .......... .......... .......... .......... .......... .......... 421 .......... .......... .......... .......... .......... .......... 481 .......... .......... .......... .......... .......... .......... 541 .......... .......... .......... .......... .......... .......... 601 .......... .......... .......... .......... .......... .......... 661 .......... .......... .......... .......... .......... .......... 721 .......... .......... .......... .......... .......... .......... 781 .......... .......... .......... .......... .......... .......... 841 .......... .......... .......... .......... .......... .......... 901 .......... .......... .......... .......... .......... .......... 961 .......... .......... .......... .......... .......... .......... 1021 .......... .......... .......... .......... .......... .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .......... .......... .......... .......... .......... 1201 .......... .......... .......... .......... .......... .......... 1261 .......... .......... .......... .......... .......... .......... 1321 .......... .......... .......... .......... .......... .......... 1381 .......... .......... .......... .......... .......... .......... 1441 .......... .......... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... .......... .......... .......... .......... .......... 1621 .......... .......... .......... .......... .......... .......... 1681 .......... .......... .......... .......... .......... .......... 1741 .......... .......... .......... .......... .......... .......... 1801 .......... .......... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .......... .......... 1921 .......... .......... .......... .......... .......... .......... 1981 .......... .......... .......... .......... .......... .......... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... .......... .......... .......... .......... .......... 2161 .......... .......... .......... .......... .......... .......... 2221 .......... .......... .......... .......... .......... .......... 2281 .......... .......... .......... .......... .......... .......... 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... .......... 2701 .......... .......... .......... .......... .......... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... .......... 2881 .......... .......... .......... .......... .......... .......... 2941 .......... .......... .......... .......... .......... .......... 3001 .......... .......... .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .......... .......... 3181 .......... .......... .......... .......... .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .......... .......... .......... 3361 .......... .......... .......... .......... .......... .......... 3421 .......... .......... .......... .......... .......... .......... 3481 .......... .......... .......... .......... .......... .......... 3541 .......... .......... .......... .......... .......... .......... 3601 .......... .......... .......... .......... .......... .......... 3661 .......... .......... .......... .......... .......... .......... 3721 .......... .......... .......... .......... .......... .......... 3781 .....-.... .......... .......... .......... .......... .......... 3841 .......... .......... .......... .......... .......... .......... 3901 .......... .......... .......... .......... .......... .......... 3961 .......... .......... .......... .......... .......... .......... 4021 .......... .......... .......... .......... .......... .......... 4081 .......... .......... .......... .......... .......... .......... 4141 .......... .......... .......... .......... .......... .......... 4201 .......... .......... .......... .......... .......... .......... 4261 .......... .......... .......... .......... .......... .......... 4321 .......... .......... .......... .......... .......... .......... 4381 .......... .......... .......... .......... .......... .......... 4441 .......... .......... .......... .......... .......... .......... 4501 .......... .......... .......... .......... .......... .......... 4561 .......... .......... .......... .......... .......... .......... 4621 .......... .......... .......... .......... .......... .......... 4681 .......... .......... .......... .......... .......... .......... 4741 .......... .......... .......... .......... .......... .......... 4801 .......... .......... .......... ..)....... .......... .......... 4861 .......... .......... .......... .......... .......... .......... 4921 .......... .......... .......... .......... .......... .......... 4981 .......... .......... .......... .......... .......... .......... 5041 .......... .......... .......... .......... .......... .......... 5101 .......... .......... .......... .......... .......... .......... 5161 .......... .......... .......... .......... .......... .......... 5221 .......... .......... .......... .......... .......... .......... 5281 .......... .......... .......... .......... .......... .......... 5341 .......... .......... .......... .......... .......... .......... 5401 .......... .......... .......... .......... .......... .......... 5461 .......... .......... .......... .......... .......... .......... 5521 .......... .......... .......... .......... .......... .......... 5581 .......... .......... .......... .......... .......... .......... 5641 .......... .......... .......... .......... .......... .......... 5701 .......... .......... .......... .......... .......... .......... 5761 .......... .......... .......... .......... .......... .......... 5821 .......... .......... .......... .......... .......... .......... 5881 .......... .......... .......... .......... .......... .......... 5941 .......... .......... .......... .......... .......... .......... 6001 .......... .......... .......... .......... .......... .......... 6061 .......... .......... .......... .......... .......... .......... 6121 .......... .......... .......... .......... .......... .......... 6181 .......... .......... .......... .......... .......... .......... 6241 .......... .......... .......... .......... .......... .......... 6301 .......... .......... .......... .......... .......... .......... 6361 .......... .......... .......... .......... .......... .......... 6421 .......... .......... .......... .......... .......... .......... 6481 .......... .......... .......... .......... .......... .......... 6541 .......... .......... .......... .......... .......... .......... 6601 .......... .......... .......... .......... .......... .......... 6661 .......... .......... .......... .......... .......... .......... 6721 .......... .......... .......... .......... .......... .......... 6781 .......... .......... .......... .......... .......... .......... 6841 .......... .......... .......... .......... .......... .......... 6901 .......... .......... .......... .......... .......... .......... 6961 .......... .......... .......... .......... .......... .......... 7021 .......... .......... .......... .......... .......... .......... 7081 .......... .......... .......... .......... .......... .......... 7141 .......... .......... .......... .......... .......... .......... 7201 .......... .......... .......... .......... .......... .......... 7261 .......... .......... .......... .......... .......... .......... 7321 .......... .......... .......... .......... .......... .......... 7381 .......... .......... .......... .......... .......... .......... 7441 .......... .......... .......... .......... .......... .......... 7501 .......... .......... .......... .......... .......... .......... 7561 .......... .......... .......... .......... .......... .......... 7621 .......... .......... .......... .......... .......... .......... 7681 .......... .......... .......... .......... .......... .......... 7741 .......... .......... .......... .......... .......... .......... 7801 .......... .......... .......... .......... .......... .......... 7861 .......... .......... .......... .......... .......... .......... 7921 .......... .......... .......... .......... .......... .......... 7981 .......... .......... .......... .......... .......... .......... 8041 .......... .......... .......... .......... .......... .......... 8101 .......... .......... .......... .......... .......... .......... 8161 .......... .......... .......... .......... .......... .......... 8221 .......... .......... .......... .......... .......... .......... 8281 .......... .......... .......... .......... .......... .......... 8341 .......... .......... .......... .......... .......... .......... 8401 .......... .......... .......... .......... .......... .......... 8461 .......... .......... .......... .......... .......... .......... 8521 .......... .......... .......... .......... .......... .......... 8581 .......... .......... .......... .......... .......... .......... 8641 .......... .......... .......... .......... .......... .......... 8701 .......... .......... .......... .......... .......... .......... 8761 .......... .......... .......... .......... .......... .......... 8821 .......... .......... .......... .......... .......... .......... 8881 .......... .......... .......... .......... .......... .......... 8941 .......... .......... .......... .......... .......... .......... 9001 .......... .......... .......... .......... .......... .......... 9061 .......... .......... .......... .......... .......... .......... 9121 .......... .......... .......... .......... .......... .......... 9181 .......... .......... .......... .......... .......... .......... 9241 .......... .......... .......... .......... .......... .......... 9301 .......... .......... .......... .......... .......... .......... 9361 .......... .......... .......... .......... .......... .......... 9421 .......... .......... .......... .......... .......... .......... 9481 .......... .......... .......... .......... .......... .......... 9541 .......... .......... .......... .......... .......... .......... 9601 .......... .......... .......... .......... .......... .......... 9661 .......... .......... .......... .......... .......... .......... 9721 .......... .......... .......... .......... .......... .......... 9781 .......... .......... .......... .......... .......... .......... 9841 .......... .......... .......... .......... .......... .......... 9901 .......... .......... .......... .......... .......... .......... 9961 .......... .......... .......... .......... .......... .......... 10021 .......... .......... .......... .......... .......... .......... 10081 .......... .......... .......... .......... .......... .......... 10141 .......... .......... .......... .......... .......... .......... 10201 .......... .......... .......... .......... .......... .......... 10261 .......... .......... .......... .......... .......... .......... 10321 .......... .......... .......... .......... .......... .......... 10381 .......... .......... .......... .......... .......... .......... 10441 .......... .......... .......... .......... .......... .......... 10501 .......... .......... .......... .......... .......... .......... 10561 .......... .......... .......... .......... .......... .......... 10621 .......... .......... .......... .......... .......... .......... 10681 .......... .......... .......... .......... .......... .......... 10741 .......... .......... .......... ||||| // LOCUS (16)-EUTEL 10775 bp RNA RNA 09-JAN-1999 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 10775) Corresponding GenBank entry: DIVIDER BASE COUNT 0 a 0 c 0 g 0 t 10775 others ORIGIN 1 |......... .......... .......... .......... .......... .......... 61 .......... .......... .......... .......... .......... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......... .......... .......... .......... 241 .......... .......... .......... .......... .......... .......... 301 .......... .......... .......... .......... .......... .......... 361 .......... .......... .......... .......... .......... .......... 421 .......... .......... .......... .......... .......... .......... 481 .......... .......... .......... .......... .......... .......... 541 .......... .......... .......... .......... .......... .......... 601 .......... .......... .......... .......... .......... .......... 661 .......... .......... .......... .......... .......... .......... 721 .......... .......... .......... .......... .......... .......... 781 .......... .......... .......... .......... .......... .......... 841 .......... .......... .......... .......... .......... .......... 901 .......... .......... .......... .......... .......... .......... 961 .......... .......... .......... .......... .......... .......... 1021 .......... .......... .......... .......... .......... .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .......... .......... .......... .......... .......... 1201 .......... .......... .......... .......... .......... .......... 1261 .......... .......... .......... .......... .......... .......... 1321 .......... .......... .......... .......... .......... .......... 1381 .......... .......... .......... .......... .......... .......... 1441 .......... .......... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... .......... .......... .......... .......... .......... 1621 .......... .......... .......... .......... .......... .......... 1681 .......... .......... .......... .......... .......... .......... 1741 .......... .......... .......... .......... .......... .......... 1801 .......... .......... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .......... .......... 1921 .......... .......... .......... .......... .......... .......... 1981 .......... .......... .......... .......... .......... .......... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... .......... .......... .......... .......... .......... 2161 .......... .......... .......... .......... .......... .......... 2221 .......... .......... .......... .......... .......... .......... 2281 .......... .......... .......... .......... .......... .......... 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... .......... 2701 .......... .......... .......... .......... .......... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... .......... 2881 .......... .......... .......... .......... .......... .......... 2941 .......... .......... .......... .......... .......... .......... 3001 .......... .......... .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .......... .......... 3181 .......... .......... .......... .......... .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .......... .......... .......... 3361 .......... .......... .......... .......... .......... .......... 3421 .......... .......... .......... .......... .......... .......... 3481 .......... .......... .......... .......... .......... .......... 3541 .......... .......... .......... .......... .......... .......... 3601 .......... .......... .......... .......... .......... .......... 3661 .......... .......... .......... .......... .......... .......... 3721 .......... .......... .......... .......... .......... .......... 3781 .....-.... .......... .......... .......... .......... .......... 3841 .......... .......... .......... .......... .......... .......... 3901 .......... .......... .......... .......... .......... .......... 3961 .......... .......... .......... .......... .......... .......... 4021 .......... .......... .......... .......... .......... .......... 4081 .......... .......... .......... .......... .......... .......... 4141 .......... .......... .......... .......... .......... .......... 4201 .......... .......... .......... .......... .......... .......... 4261 .......... .......... .......... .......... .......... .......... 4321 .......... .......... .......... .......... .......... .......... 4381 .......... .......... .......... .......... .......... .......... 4441 .......... .......... .......... .......... .......... .......... 4501 .......... .......... .......... .......... .......... .......... 4561 .......... .......... .......... .......... .......... .......... 4621 .......... .......... .......... .......... .......... .......... 4681 .......... .......... .......... .......... .......... .......... 4741 .......... .......... .......... .......... .......... .......... 4801 .......... .......... .......... ..)....... .......... .......... 4861 .......... .......... .......... .......... .......... .......... 4921 .......... .......... .......... .......... .......... .......... 4981 .......... .......... .......... .......... .......... .......... 5041 .......... .......... .......... .......... .......... .......... 5101 .......... .......... .......... .......... .......... .......... 5161 .......... .......... .......... .......... .......... .......... 5221 .......... .......... .......... .......... .......... .......... 5281 .......... .......... .......... .......... .......... .......... 5341 .......... .......... .......... .......... .......... .......... 5401 .......... .......... .......... .......... .......... .......... 5461 .......... .......... .......... .......... .......... .......... 5521 .......... .......... .......... .......... .......... .......... 5581 .......... .......... .......... .......... .......... .......... 5641 .......... .......... .......... .......... .......... .......... 5701 .......... .......... .......... .......... .......... .......... 5761 .......... .......... .......... .......... .......... .......... 5821 .......... .......... .......... .......... .......... .......... 5881 .......... .......... .......... .......... .......... .......... 5941 .......... .......... .......... .......... .......... .......... 6001 .......... .......... .......... .......... .......... .......... 6061 .......... .......... .......... .......... .......... .......... 6121 .......... .......... .......... .......... .......... .......... 6181 .......... .......... .......... .......... .......... .......... 6241 .......... .......... .......... .......... .......... .......... 6301 .......... .......... .......... .......... .......... .......... 6361 .......... .......... .......... .......... .......... .......... 6421 .......... .......... .......... .......... .......... .......... 6481 .......... .......... .......... .......... .......... .......... 6541 .......... .......... .......... .......... .......... .......... 6601 .......... .......... .......... .......... .......... .......... 6661 .......... .......... .......... .......... .......... .......... 6721 .......... .......... .......... .......... .......... .......... 6781 .......... .......... .......... .......... .......... .......... 6841 .......... .......... .......... .......... .......... .......... 6901 .......... .......... .......... .......... .......... .......... 6961 .......... .......... .......... .......... .......... .......... 7021 .......... .......... .......... .......... .......... .......... 7081 .......... .......... .......... .......... .......... .......... 7141 .......... .......... .......... .......... .......... .......... 7201 .......... .......... .......... .......... .......... .......... 7261 .......... .......... .......... .......... .......... .......... 7321 .......... .......... .......... .......... .......... .......... 7381 .......... .......... .......... .......... .......... .......... 7441 .......... .......... .......... .......... .......... .......... 7501 .......... .......... .......... .......... .......... .......... 7561 .......... .......... .......... .......... .......... .......... 7621 .......... .......... .......... .......... .......... .......... 7681 .......... .......... .......... .......... .......... .......... 7741 .......... .......... .......... .......... .......... .......... 7801 .......... .......... .......... .......... .......... .......... 7861 .......... .......... .......... .......... .......... .......... 7921 .......... .......... .......... .......... .......... .......... 7981 .......... .......... .......... .......... .......... .......... 8041 .......... .......... .......... .......... .......... .......... 8101 .......... .......... .......... .......... .......... .......... 8161 .......... .......... .......... .......... .......... .......... 8221 .......... .......... .......... .......... .......... .......... 8281 .......... .......... .......... .......... .......... .......... 8341 .......... .......... .......... .......... .......... .......... 8401 .......... .......... .......... .......... .......... .......... 8461 .......... .......... .......... .......... .......... .......... 8521 .......... .......... .......... .......... .......... .......... 8581 .......... .......... .......... .......... .......... .......... 8641 .......... .......... .......... .......... .......... .......... 8701 .......... .......... .......... .......... .......... .......... 8761 .......... .......... .......... .......... .......... .......... 8821 .......... .......... .......... .......... .......... .......... 8881 .......... .......... .......... .......... .......... .......... 8941 .......... .......... .......... .......... .......... .......... 9001 .......... .......... .......... .......... .......... .......... 9061 .......... .......... .......... .......... .......... .......... 9121 .......... .......... .......... .......... .......... .......... 9181 .......... .......... .......... .......... .......... .......... 9241 .......... .......... .......... .......... .......... .......... 9301 .......... .......... .......... .......... .......... .......... 9361 .......... .......... .......... .......... .......... .......... 9421 .......... .......... .......... .......... .......... .......... 9481 .......... .......... .......... .......... .......... .......... 9541 .......... .......... .......... .......... .......... .......... 9601 .......... .......... .......... .......... .......... .......... 9661 .......... .......... .......... .......... .......... .......... 9721 .......... .......... .......... .......... .......... .......... 9781 .......... .......... .......... .......... .......... .......... 9841 .......... .......... .......... .......... .......... .......... 9901 .......... .......... .......... .......... .......... .......... 9961 .......... .......... .......... .......... .......... .......... 10021 .......... .......... .......... .......... .......... .......... 10081 .......... .......... .......... .......... .......... .......... 10141 .......... .......... .......... .......... .......... .......... 10201 .......... .......... .......... .......... .......... .......... 10261 .......... .......... .......... .......... .......... .......... 10321 .......... .......... .......... .......... .......... .......... 10381 .......... .......... .......... .......... .......... .......... 10441 .......... .......... .......... .......... .......... .......... 10501 .......... .......... .......... .......... .......... .......... 10561 .......... .......... .......... .......... .......... .......... 10621 .......... .......... .......... .......... .......... .......... 10681 .......... .......... .......... .......... .......... .......... 10741 .......... .......... .......... ||||| // LOCUS (17)-OSTAR 10775 bp RNA RNA 09-JAN-1999 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 10775) Corresponding GenBank entry: DIVIDER BASE COUNT 0 a 0 c 0 g 0 t 10775 others ORIGIN 1 |......... .......... .......... .......... .......... .......... 61 .......... .......... .......... .......... .......... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......... .......... .......... .......... 241 .......... .......... .......... .......... .......... .......... 301 .......... .......... .......... .......... .......... .......... 361 .......... .......... .......... .......... .......... .......... 421 .......... .......... .......... .......... .......... .......... 481 .......... .......... .......... .......... .......... .......... 541 .......... .......... .......... .......... .......... .......... 601 .......... .......... .......... .......... .......... .......... 661 .......... .......... .......... .......... .......... .......... 721 .......... .......... .......... .......... .......... .......... 781 .......... .......... .......... .......... .......... .......... 841 .......... .......... .......... .......... .......... .......... 901 .......... .......... .......... .......... .......... .......... 961 .......... .......... .......... .......... .......... .......... 1021 .......... .......... .......... .......... .......... .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .......... .......... .......... .......... .......... 1201 .......... .......... .......... .......... .......... .......... 1261 .......... .......... .......... .......... .......... .......... 1321 .......... .......... .......... .......... .......... .......... 1381 .......... .......... .......... .......... .......... .......... 1441 .......... .......... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... .......... .......... .......... .......... .......... 1621 .......... .......... .......... .......... .......... .......... 1681 .......... .......... .......... .......... .......... .......... 1741 .......... .......... .......... .......... .......... .......... 1801 .......... .......... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .......... .......... 1921 .......... .......... .......... .......... .......... .......... 1981 .......... .......... .......... .......... .......... .......... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... .......... .......... .......... .......... .......... 2161 .......... .......... .......... .......... .......... .......... 2221 .......... .......... .......... .......... .......... .......... 2281 .......... .......... .......... .......... .......... .......... 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... .......... 2701 .......... .......... .......... .......... .......... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... .......... 2881 .......... .......... .......... .......... .......... .......... 2941 .......... .......... .......... .......... .......... .......... 3001 .......... .......... .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .......... .......... 3181 .......... .......... .......... .......... .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .......... .......... .......... 3361 .......... .......... .......... .......... .......... .......... 3421 .......... .......... .......... .......... .......... .......... 3481 .......... .......... .......... .......... .......... .......... 3541 .......... .......... .......... .......... .......... .......... 3601 .......... .......... .......... .......... .......... .......... 3661 .......... .......... .......... .......... .......... .......... 3721 .......... .......... .......... .......... .......... .......... 3781 .....-.... .......... .......... .......... .......... .......... 3841 .......... .......... .......... .......... .......... .......... 3901 .......... .......... .......... .......... .......... .......... 3961 .......... .......... .......... .......... .......... .......... 4021 .......... .......... .......... .......... .......... .......... 4081 .......... .......... .......... .......... .......... .......... 4141 .......... .......... .......... .......... .......... .......... 4201 .......... .......... .......... .......... .......... .......... 4261 .......... .......... .......... .......... .......... .......... 4321 .......... .......... .......... .......... .......... .......... 4381 .......... .......... .......... .......... .......... .......... 4441 .......... .......... .......... .......... .......... .......... 4501 .......... .......... .......... .......... .......... .......... 4561 .......... .......... .......... .......... .......... .......... 4621 .......... .......... .......... .......... .......... .......... 4681 .......... .......... .......... .......... .......... .......... 4741 .......... .......... .......... .......... .......... .......... 4801 .......... .......... .......... ..)....... .......... .......... 4861 .......... .......... .......... .......... .......... .......... 4921 .......... .......... .......... .......... .......... .......... 4981 .......... .......... .......... .......... .......... .......... 5041 .......... .......... .......... .......... .......... .......... 5101 .......... .......... .......... .......... .......... .......... 5161 .......... .......... .......... .......... .......... .......... 5221 .......... .......... .......... .......... .......... .......... 5281 .......... .......... .......... .......... .......... .......... 5341 .......... .......... .......... .......... .......... .......... 5401 .......... .......... .......... .......... .......... .......... 5461 .......... .......... .......... .......... .......... .......... 5521 .......... .......... .......... .......... .......... .......... 5581 .......... .......... .......... .......... .......... .......... 5641 .......... .......... .......... .......... .......... .......... 5701 .......... .......... .......... .......... .......... .......... 5761 .......... .......... .......... .......... .......... .......... 5821 .......... .......... .......... .......... .......... .......... 5881 .......... .......... .......... .......... .......... .......... 5941 .......... .......... .......... .......... .......... .......... 6001 .......... .......... .......... .......... .......... .......... 6061 .......... .......... .......... .......... .......... .......... 6121 .......... .......... .......... .......... .......... .......... 6181 .......... .......... .......... .......... .......... .......... 6241 .......... .......... .......... .......... .......... .......... 6301 .......... .......... .......... .......... .......... .......... 6361 .......... .......... .......... .......... .......... .......... 6421 .......... .......... .......... .......... .......... .......... 6481 .......... .......... .......... .......... .......... .......... 6541 .......... .......... .......... .......... .......... .......... 6601 .......... .......... .......... .......... .......... .......... 6661 .......... .......... .......... .......... .......... .......... 6721 .......... .......... .......... .......... .......... .......... 6781 .......... .......... .......... .......... .......... .......... 6841 .......... .......... .......... .......... .......... .......... 6901 .......... .......... .......... .......... .......... .......... 6961 .......... .......... .......... .......... .......... .......... 7021 .......... .......... .......... .......... .......... .......... 7081 .......... .......... .......... .......... .......... .......... 7141 .......... .......... .......... .......... .......... .......... 7201 .......... .......... .......... .......... .......... .......... 7261 .......... .......... .......... .......... .......... .......... 7321 .......... .......... .......... .......... .......... .......... 7381 .......... .......... .......... .......... .......... .......... 7441 .......... .......... .......... .......... .......... .......... 7501 .......... .......... .......... .......... .......... .......... 7561 .......... .......... .......... .......... .......... .......... 7621 .......... .......... .......... .......... .......... .......... 7681 .......... .......... .......... .......... .......... .......... 7741 .......... .......... .......... .......... .......... .......... 7801 .......... .......... .......... .......... .......... .......... 7861 .......... .......... .......... .......... .......... .......... 7921 .......... .......... .......... .......... .......... .......... 7981 .......... .......... .......... .......... .......... .......... 8041 .......... .......... .......... .......... .......... .......... 8101 .......... .......... .......... .......... .......... .......... 8161 .......... .......... .......... .......... .......... .......... 8221 .......... .......... .......... .......... .......... .......... 8281 .......... .......... .......... .......... .......... .......... 8341 .......... .......... .......... .......... .......... .......... 8401 .......... .......... .......... .......... .......... .......... 8461 .......... .......... .......... .......... .......... .......... 8521 .......... .......... .......... .......... .......... .......... 8581 .......... .......... .......... .......... .......... .......... 8641 .......... .......... .......... .......... .......... .......... 8701 .......... .......... .......... .......... .......... .......... 8761 .......... .......... .......... .......... .......... .......... 8821 .......... .......... .......... .......... .......... .......... 8881 .......... .......... .......... .......... .......... .......... 8941 .......... .......... .......... .......... .......... .......... 9001 .......... .......... .......... .......... .......... .......... 9061 .......... .......... .......... .......... .......... .......... 9121 .......... .......... .......... .......... .......... .......... 9181 .......... .......... .......... .......... .......... .......... 9241 .......... .......... .......... .......... .......... .......... 9301 .......... .......... .......... .......... .......... .......... 9361 .......... .......... .......... .......... .......... .......... 9421 .......... .......... .......... .......... .......... .......... 9481 .......... .......... .......... .......... .......... .......... 9541 .......... .......... .......... .......... .......... .......... 9601 .......... .......... .......... .......... .......... .......... 9661 .......... .......... .......... .......... .......... .......... 9721 .......... .......... .......... .......... .......... .......... 9781 .......... .......... .......... .......... .......... .......... 9841 .......... .......... .......... .......... .......... .......... 9901 .......... .......... .......... .......... .......... .......... 9961 .......... .......... .......... .......... .......... .......... 10021 .......... .......... .......... .......... .......... .......... 10081 .......... .......... .......... .......... .......... .......... 10141 .......... .......... .......... .......... .......... .......... 10201 .......... .......... .......... .......... .......... .......... 10261 .......... .......... .......... .......... .......... .......... 10321 .......... .......... .......... .......... .......... .......... 10381 .......... .......... .......... .......... .......... .......... 10441 .......... .......... .......... .......... .......... .......... 10501 .......... .......... .......... .......... .......... .......... 10561 .......... .......... .......... .......... .......... .......... 10621 .......... .......... .......... .......... .......... .......... 10681 .......... .......... .......... .......... .......... .......... 10741 .......... .......... .......... ||||| // LOCUS (18)-CYPRI 10775 bp RNA RNA 09-JAN-1999 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 10775) Corresponding GenBank entry: DIVIDER BASE COUNT 0 a 0 c 0 g 0 t 10775 others ORIGIN 1 |......... .......... .......... .......... .......... .......... 61 .......... .......... .......... .......... .......... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......... .......... .......... .......... 241 .......... .......... .......... .......... .......... .......... 301 .......... .......... .......... .......... .......... .......... 361 .......... .......... .......... .......... .......... .......... 421 .......... .......... .......... .......... .......... .......... 481 .......... .......... .......... .......... .......... .......... 541 .......... .......... .......... .......... .......... .......... 601 .......... .......... .......... .......... .......... .......... 661 .......... .......... .......... .......... .......... .......... 721 .......... .......... .......... .......... .......... .......... 781 .......... .......... .......... .......... .......... .......... 841 .......... .......... .......... .......... .......... .......... 901 .......... .......... .......... .......... .......... .......... 961 .......... .......... .......... .......... .......... .......... 1021 .......... .......... .......... .......... .......... .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .......... .......... .......... .......... .......... 1201 .......... .......... .......... .......... .......... .......... 1261 .......... .......... .......... .......... .......... .......... 1321 .......... .......... .......... .......... .......... .......... 1381 .......... .......... .......... .......... .......... .......... 1441 .......... .......... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... .......... .......... .......... .......... .......... 1621 .......... .......... .......... .......... .......... .......... 1681 .......... .......... .......... .......... .......... .......... 1741 .......... .......... .......... .......... .......... .......... 1801 .......... .......... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .......... .......... 1921 .......... .......... .......... .......... .......... .......... 1981 .......... .......... .......... .......... .......... .......... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... .......... .......... .......... .......... .......... 2161 .......... .......... .......... .......... .......... .......... 2221 .......... .......... .......... .......... .......... .......... 2281 .......... .......... .......... .......... .......... .......... 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... .......... 2701 .......... .......... .......... .......... .......... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... .......... 2881 .......... .......... .......... .......... .......... .......... 2941 .......... .......... .......... .......... .......... .......... 3001 .......... .......... .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .......... .......... 3181 .......... .......... .......... .......... .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .......... .......... .......... 3361 .......... .......... .......... .......... .......... .......... 3421 .......... .......... .......... .......... .......... .......... 3481 .......... .......... .......... .......... .......... .......... 3541 .......... .......... .......... .......... .......... .......... 3601 .......... .......... .......... .......... .......... .......... 3661 .......... .......... .......... .......... .......... .......... 3721 .......... .......... .......... .......... .......... .......... 3781 .....-.... .......... .......... .......... .......... .......... 3841 .......... .......... .......... .......... .......... .......... 3901 .......... .......... .......... .......... .......... .......... 3961 .......... .......... .......... .......... .......... .......... 4021 .......... .......... .......... .......... .......... .......... 4081 .......... .......... .......... .......... .......... .......... 4141 .......... .......... .......... .......... .......... .......... 4201 .......... .......... .......... .......... .......... .......... 4261 .......... .......... .......... .......... .......... .......... 4321 .......... .......... .......... .......... .......... .......... 4381 .......... .......... .......... .......... .......... .......... 4441 .......... .......... .......... .......... .......... .......... 4501 .......... .......... .......... .......... .......... .......... 4561 .......... .......... .......... .......... .......... .......... 4621 .......... .......... .......... .......... .......... .......... 4681 .......... .......... .......... .......... .......... .......... 4741 .......... .......... .......... .......... .......... .......... 4801 .......... .......... .......... ..)....... .......... .......... 4861 .......... .......... .......... .......... .......... .......... 4921 .......... .......... .......... .......... .......... .......... 4981 .......... .......... .......... .......... .......... .......... 5041 .......... .......... .......... .......... .......... .......... 5101 .......... .......... .......... .......... .......... .......... 5161 .......... .......... .......... .......... .......... .......... 5221 .......... .......... .......... .......... .......... .......... 5281 .......... .......... .......... .......... .......... .......... 5341 .......... .......... .......... .......... .......... .......... 5401 .......... .......... .......... .......... .......... .......... 5461 .......... .......... .......... .......... .......... .......... 5521 .......... .......... .......... .......... .......... .......... 5581 .......... .......... .......... .......... .......... .......... 5641 .......... .......... .......... .......... .......... .......... 5701 .......... .......... .......... .......... .......... .......... 5761 .......... .......... .......... .......... .......... .......... 5821 .......... .......... .......... .......... .......... .......... 5881 .......... .......... .......... .......... .......... .......... 5941 .......... .......... .......... .......... .......... .......... 6001 .......... .......... .......... .......... .......... .......... 6061 .......... .......... .......... .......... .......... .......... 6121 .......... .......... .......... .......... .......... .......... 6181 .......... .......... .......... .......... .......... .......... 6241 .......... .......... .......... .......... .......... .......... 6301 .......... .......... .......... .......... .......... .......... 6361 .......... .......... .......... .......... .......... .......... 6421 .......... .......... .......... .......... .......... .......... 6481 .......... .......... .......... .......... .......... .......... 6541 .......... .......... .......... .......... .......... .......... 6601 .......... .......... .......... .......... .......... .......... 6661 .......... .......... .......... .......... .......... .......... 6721 .......... .......... .......... .......... .......... .......... 6781 .......... .......... .......... .......... .......... .......... 6841 .......... .......... .......... .......... .......... .......... 6901 .......... .......... .......... .......... .......... .......... 6961 .......... .......... .......... .......... .......... .......... 7021 .......... .......... .......... .......... .......... .......... 7081 .......... .......... .......... .......... .......... .......... 7141 .......... .......... .......... .......... .......... .......... 7201 .......... .......... .......... .......... .......... .......... 7261 .......... .......... .......... .......... .......... .......... 7321 .......... .......... .......... .......... .......... .......... 7381 .......... .......... .......... .......... .......... .......... 7441 .......... .......... .......... .......... .......... .......... 7501 .......... .......... .......... .......... .......... .......... 7561 .......... .......... .......... .......... .......... .......... 7621 .......... .......... .......... .......... .......... .......... 7681 .......... .......... .......... .......... .......... .......... 7741 .......... .......... .......... .......... .......... .......... 7801 .......... .......... .......... .......... .......... .......... 7861 .......... .......... .......... .......... .......... .......... 7921 .......... .......... .......... .......... .......... .......... 7981 .......... .......... .......... .......... .......... .......... 8041 .......... .......... .......... .......... .......... .......... 8101 .......... .......... .......... .......... .......... .......... 8161 .......... .......... .......... .......... .......... .......... 8221 .......... .......... .......... .......... .......... .......... 8281 .......... .......... .......... .......... .......... .......... 8341 .......... .......... .......... .......... .......... .......... 8401 .......... .......... .......... .......... .......... .......... 8461 .......... .......... .......... .......... .......... .......... 8521 .......... .......... .......... .......... .......... .......... 8581 .......... .......... .......... .......... .......... .......... 8641 .......... .......... .......... .......... .......... .......... 8701 .......... .......... .......... .......... .......... .......... 8761 .......... .......... .......... .......... .......... .......... 8821 .......... .......... .......... .......... .......... .......... 8881 .......... .......... .......... .......... .......... .......... 8941 .......... .......... .......... .......... .......... .......... 9001 .......... .......... .......... .......... .......... .......... 9061 .......... .......... .......... .......... .......... .......... 9121 .......... .......... .......... .......... .......... .......... 9181 .......... .......... .......... .......... .......... .......... 9241 .......... .......... .......... .......... .......... .......... 9301 .......... .......... .......... .......... .......... .......... 9361 .......... .......... .......... .......... .......... .......... 9421 .......... .......... .......... .......... .......... .......... 9481 .......... .......... .......... .......... .......... .......... 9541 .......... .......... .......... .......... .......... .......... 9601 .......... .......... .......... .......... .......... .......... 9661 .......... .......... .......... .......... .......... .......... 9721 .......... .......... .......... .......... .......... .......... 9781 .......... .......... .......... .......... .......... .......... 9841 .......... .......... .......... .......... .......... .......... 9901 .......... .......... .......... .......... .......... .......... 9961 .......... .......... .......... .......... .......... .......... 10021 .......... .......... .......... .......... .......... .......... 10081 .......... .......... .......... .......... .......... .......... 10141 .......... .......... .......... .......... .......... .......... 10201 .......... .......... .......... .......... .......... .......... 10261 .......... .......... .......... .......... .......... .......... 10321 .......... .......... .......... .......... .......... .......... 10381 .......... .......... .......... .......... .......... .......... 10441 .......... .......... .......... .......... .......... .......... 10501 .......... .......... .......... .......... .......... .......... 10561 .......... .......... .......... .......... .......... .......... 10621 .......... .......... .......... .......... .......... .......... 10681 .......... .......... .......... .......... .......... .......... 10741 .......... .......... .......... ||||| // LOCUS (19)-CYPRI 10775 bp RNA RNA 09-JAN-1999 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 10775) Corresponding GenBank entry: DIVIDER BASE COUNT 0 a 0 c 0 g 0 t 10775 others ORIGIN 1 |......... .......... .......... .......... .......... .......... 61 .......... .......... .......... .......... .......... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......... .......... .......... .......... 241 .......... .......... .......... .......... .......... .......... 301 .......... .......... .......... .......... .......... .......... 361 .......... .......... .......... .......... .......... .......... 421 .......... .......... .......... .......... .......... .......... 481 .......... .......... .......... .......... .......... .......... 541 .......... .......... .......... .......... .......... .......... 601 .......... .......... .......... .......... .......... .......... 661 .......... .......... .......... .......... .......... .......... 721 .......... .......... .......... .......... .......... .......... 781 .......... .......... .......... .......... .......... .......... 841 .......... .......... .......... .......... .......... .......... 901 .......... .......... .......... .......... .......... .......... 961 .......... .......... .......... .......... .......... .......... 1021 .......... .......... .......... .......... .......... .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .......... .......... .......... .......... .......... 1201 .......... .......... .......... .......... .......... .......... 1261 .......... .......... .......... .......... .......... .......... 1321 .......... .......... .......... .......... .......... .......... 1381 .......... .......... .......... .......... .......... .......... 1441 .......... .......... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... .......... .......... .......... .......... .......... 1621 .......... .......... .......... .......... .......... .......... 1681 .......... .......... .......... .......... .......... .......... 1741 .......... .......... .......... .......... .......... .......... 1801 .......... .......... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .......... .......... 1921 .......... .......... .......... .......... .......... .......... 1981 .......... .......... .......... .......... .......... .......... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... .......... .......... .......... .......... .......... 2161 .......... .......... .......... .......... .......... .......... 2221 .......... .......... .......... .......... .......... .......... 2281 .......... .......... .......... .......... .......... .......... 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... .......... 2701 .......... .......... .......... .......... .......... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... .......... 2881 .......... .......... .......... .......... .......... .......... 2941 .......... .......... .......... .......... .......... .......... 3001 .......... .......... .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .......... .......... 3181 .......... .......... .......... .......... .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .......... .......... .......... 3361 .......... .......... .......... .......... .......... .......... 3421 .......... .......... .......... .......... .......... .......... 3481 .......... .......... .......... .......... .......... .......... 3541 .......... .......... .......... .......... .......... .......... 3601 .......... .......... .......... .......... .......... .......... 3661 .......... .......... .......... .......... .......... .......... 3721 .......... .......... .......... .......... .......... .......... 3781 .....-.... .......... .......... .......... .......... .......... 3841 .......... .......... .......... .......... .......... .......... 3901 .......... .......... .......... .......... .......... .......... 3961 .......... .......... .......... .......... .......... .......... 4021 .......... .......... .......... .......... .......... .......... 4081 .......... .......... .......... .......... .......... .......... 4141 .......... .......... .......... .......... .......... .......... 4201 .......... .......... .......... .......... .......... .......... 4261 .......... .......... .......... .......... .......... .......... 4321 .......... .......... .......... .......... .......... .......... 4381 .......... .......... .......... .......... .......... .......... 4441 .......... .......... .......... .......... .......... .......... 4501 .......... .......... .......... .......... .......... .......... 4561 .......... .......... .......... .......... .......... .......... 4621 .......... .......... .......... .......... .......... .......... 4681 .......... .......... .......... .......... .......... .......... 4741 .......... .......... .......... .......... .......... .......... 4801 .......... .......... .......... ..)....... .......... .......... 4861 .......... .......... .......... .......... .......... .......... 4921 .......... .......... .......... .......... .......... .......... 4981 .......... .......... .......... .......... .......... .......... 5041 .......... .......... .......... .......... .......... .......... 5101 .......... .......... .......... .......... .......... .......... 5161 .......... .......... .......... .......... .......... .......... 5221 .......... .......... .......... .......... .......... .......... 5281 .......... .......... .......... .......... .......... .......... 5341 .......... .......... .......... .......... .......... .......... 5401 .......... .......... .......... .......... .......... .......... 5461 .......... .......... .......... .......... .......... .......... 5521 .......... .......... .......... .......... .......... .......... 5581 .......... .......... .......... .......... .......... .......... 5641 .......... .......... .......... .......... .......... .......... 5701 .......... .......... .......... .......... .......... .......... 5761 .......... .......... .......... .......... .......... .......... 5821 .......... .......... .......... .......... .......... .......... 5881 .......... .......... .......... .......... .......... .......... 5941 .......... .......... .......... .......... .......... .......... 6001 .......... .......... .......... .......... .......... .......... 6061 .......... .......... .......... .......... .......... .......... 6121 .......... .......... .......... .......... .......... .......... 6181 .......... .......... .......... .......... .......... .......... 6241 .......... .......... .......... .......... .......... .......... 6301 .......... .......... .......... .......... .......... .......... 6361 .......... .......... .......... .......... .......... .......... 6421 .......... .......... .......... .......... .......... .......... 6481 .......... .......... .......... .......... .......... .......... 6541 .......... .......... .......... .......... .......... .......... 6601 .......... .......... .......... .......... .......... .......... 6661 .......... .......... .......... .......... .......... .......... 6721 .......... .......... .......... .......... .......... .......... 6781 .......... .......... .......... .......... .......... .......... 6841 .......... .......... .......... .......... .......... .......... 6901 .......... .......... .......... .......... .......... .......... 6961 .......... .......... .......... .......... .......... .......... 7021 .......... .......... .......... .......... .......... .......... 7081 .......... .......... .......... .......... .......... .......... 7141 .......... .......... .......... .......... .......... .......... 7201 .......... .......... .......... .......... .......... .......... 7261 .......... .......... .......... .......... .......... .......... 7321 .......... .......... .......... .......... .......... .......... 7381 .......... .......... .......... .......... .......... .......... 7441 .......... .......... .......... .......... .......... .......... 7501 .......... .......... .......... .......... .......... .......... 7561 .......... .......... .......... .......... .......... .......... 7621 .......... .......... .......... .......... .......... .......... 7681 .......... .......... .......... .......... .......... .......... 7741 .......... .......... .......... .......... .......... .......... 7801 .......... .......... .......... .......... .......... .......... 7861 .......... .......... .......... .......... .......... .......... 7921 .......... .......... .......... .......... .......... .......... 7981 .......... .......... .......... .......... .......... .......... 8041 .......... .......... .......... .......... .......... .......... 8101 .......... .......... .......... .......... .......... .......... 8161 .......... .......... .......... .......... .......... .......... 8221 .......... .......... .......... .......... .......... .......... 8281 .......... .......... .......... .......... .......... .......... 8341 .......... .......... .......... .......... .......... .......... 8401 .......... .......... .......... .......... .......... .......... 8461 .......... .......... .......... .......... .......... .......... 8521 .......... .......... .......... .......... .......... .......... 8581 .......... .......... .......... .......... .......... .......... 8641 .......... .......... .......... .......... .......... .......... 8701 .......... .......... .......... .......... .......... .......... 8761 .......... .......... .......... .......... .......... .......... 8821 .......... .......... .......... .......... .......... .......... 8881 .......... .......... .......... .......... .......... .......... 8941 .......... .......... .......... .......... .......... .......... 9001 .......... .......... .......... .......... .......... .......... 9061 .......... .......... .......... .......... .......... .......... 9121 .......... .......... .......... .......... .......... .......... 9181 .......... .......... .......... .......... .......... .......... 9241 .......... .......... .......... .......... .......... .......... 9301 .......... .......... .......... .......... .......... .......... 9361 .......... .......... .......... .......... .......... .......... 9421 .......... .......... .......... .......... .......... .......... 9481 .......... .......... .......... .......... .......... .......... 9541 .......... .......... .......... .......... .......... .......... 9601 .......... .......... .......... .......... .......... .......... 9661 .......... .......... .......... .......... .......... .......... 9721 .......... .......... .......... .......... .......... .......... 9781 .......... .......... .......... .......... .......... .......... 9841 .......... .......... .......... .......... .......... .......... 9901 .......... .......... .......... .......... .......... .......... 9961 .......... .......... .......... .......... .......... .......... 10021 .......... .......... .......... .......... .......... .......... 10081 .......... .......... .......... .......... .......... .......... 10141 .......... .......... .......... .......... .......... .......... 10201 .......... .......... .......... .......... .......... .......... 10261 .......... .......... .......... .......... .......... .......... 10321 .......... .......... .......... .......... .......... .......... 10381 .......... .......... .......... .......... .......... .......... 10441 .......... .......... .......... .......... .......... .......... 10501 .......... .......... .......... .......... .......... .......... 10561 .......... .......... .......... .......... .......... .......... 10621 .......... .......... .......... .......... .......... .......... 10681 .......... .......... .......... .......... .......... .......... 10741 .......... .......... .......... ||||| // LOCUS (20)-CYPRI 10775 bp RNA RNA 09-JAN-1999 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 10775) Corresponding GenBank entry: DIVIDER BASE COUNT 0 a 0 c 0 g 0 t 10775 others ORIGIN 1 |......... .......... .......... .......... .......... .......... 61 .......... .......... .......... .......... .......... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......... .......... .......... .......... 241 .......... .......... .......... .......... .......... .......... 301 .......... .......... .......... .......... .......... .......... 361 .......... .......... .......... .......... .......... .......... 421 .......... .......... .......... .......... .......... .......... 481 .......... .......... .......... .......... .......... .......... 541 .......... .......... .......... .......... .......... .......... 601 .......... .......... .......... .......... .......... .......... 661 .......... .......... .......... .......... .......... .......... 721 .......... .......... .......... .......... .......... .......... 781 .......... .......... .......... .......... .......... .......... 841 .......... .......... .......... .......... .......... .......... 901 .......... .......... .......... .......... .......... .......... 961 .......... .......... .......... .......... .......... .......... 1021 .......... .......... .......... .......... .......... .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .......... .......... .......... .......... .......... 1201 .......... .......... .......... .......... .......... .......... 1261 .......... .......... .......... .......... .......... .......... 1321 .......... .......... .......... .......... .......... .......... 1381 .......... .......... .......... .......... .......... .......... 1441 .......... .......... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... .......... .......... .......... .......... .......... 1621 .......... .......... .......... .......... .......... .......... 1681 .......... .......... .......... .......... .......... .......... 1741 .......... .......... .......... .......... .......... .......... 1801 .......... .......... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .......... .......... 1921 .......... .......... .......... .......... .......... .......... 1981 .......... .......... .......... .......... .......... .......... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... .......... .......... .......... .......... .......... 2161 .......... .......... .......... .......... .......... .......... 2221 .......... .......... .......... .......... .......... .......... 2281 .......... .......... .......... .......... .......... .......... 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... .......... 2701 .......... .......... .......... .......... .......... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... .......... 2881 .......... .......... .......... .......... .......... .......... 2941 .......... .......... .......... .......... .......... .......... 3001 .......... .......... .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .......... .......... 3181 .......... .......... .......... .......... .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .......... .......... .......... 3361 .......... .......... .......... .......... .......... .......... 3421 .......... .......... .......... .......... .......... .......... 3481 .......... .......... .......... .......... .......... .......... 3541 .......... .......... .......... .......... .......... .......... 3601 .......... .......... .......... .......... .......... .......... 3661 .......... .......... .......... .......... .......... .......... 3721 .......... .......... .......... .......... .......... .......... 3781 .....-.... .......... .......... .......... .......... .......... 3841 .......... .......... .......... .......... .......... .......... 3901 .......... .......... .......... .......... .......... .......... 3961 .......... .......... .......... .......... .......... .......... 4021 .......... .......... .......... .......... .......... .......... 4081 .......... .......... .......... .......... .......... .......... 4141 .......... .......... .......... .......... .......... .......... 4201 .......... .......... .......... .......... .......... .......... 4261 .......... .......... .......... .......... .......... .......... 4321 .......... .......... .......... .......... .......... .......... 4381 .......... .......... .......... .......... .......... .......... 4441 .......... .......... .......... .......... .......... .......... 4501 .......... .......... .......... .......... .......... .......... 4561 .......... .......... .......... .......... .......... .......... 4621 .......... .......... .......... .......... .......... .......... 4681 .......... .......... .......... .......... .......... .......... 4741 .......... .......... .......... .......... .......... .......... 4801 .......... .......... .......... ..)....... .......... .......... 4861 .......... .......... .......... .......... .......... .......... 4921 .......... .......... .......... .......... .......... .......... 4981 .......... .......... .......... .......... .......... .......... 5041 .......... .......... .......... .......... .......... .......... 5101 .......... .......... .......... .......... .......... .......... 5161 .......... .......... .......... .......... .......... .......... 5221 .......... .......... .......... .......... .......... .......... 5281 .......... .......... .......... .......... .......... .......... 5341 .......... .......... .......... .......... .......... .......... 5401 .......... .......... .......... .......... .......... .......... 5461 .......... .......... .......... .......... .......... .......... 5521 .......... .......... .......... .......... .......... .......... 5581 .......... .......... .......... .......... .......... .......... 5641 .......... .......... .......... .......... .......... .......... 5701 .......... .......... .......... .......... .......... .......... 5761 .......... .......... .......... .......... .......... .......... 5821 .......... .......... .......... .......... .......... .......... 5881 .......... .......... .......... .......... .......... .......... 5941 .......... .......... .......... .......... .......... .......... 6001 .......... .......... .......... .......... .......... .......... 6061 .......... .......... .......... .......... .......... .......... 6121 .......... .......... .......... .......... .......... .......... 6181 .......... .......... .......... .......... .......... .......... 6241 .......... .......... .......... .......... .......... .......... 6301 .......... .......... .......... .......... .......... .......... 6361 .......... .......... .......... .......... .......... .......... 6421 .......... .......... .......... .......... .......... .......... 6481 .......... .......... .......... .......... .......... .......... 6541 .......... .......... .......... .......... .......... .......... 6601 .......... .......... .......... .......... .......... .......... 6661 .......... .......... .......... .......... .......... .......... 6721 .......... .......... .......... .......... .......... .......... 6781 .......... .......... .......... .......... .......... .......... 6841 .......... .......... .......... .......... .......... .......... 6901 .......... .......... .......... .......... .......... .......... 6961 .......... .......... .......... .......... .......... .......... 7021 .......... .......... .......... .......... .......... .......... 7081 .......... .......... .......... .......... .......... .......... 7141 .......... .......... .......... .......... .......... .......... 7201 .......... .......... .......... .......... .......... .......... 7261 .......... .......... .......... .......... .......... .......... 7321 .......... .......... .......... .......... .......... .......... 7381 .......... .......... .......... .......... .......... .......... 7441 .......... .......... .......... .......... .......... .......... 7501 .......... .......... .......... .......... .......... .......... 7561 .......... .......... .......... .......... .......... .......... 7621 .......... .......... .......... .......... .......... .......... 7681 .......... .......... .......... .......... .......... .......... 7741 .......... .......... .......... .......... .......... .......... 7801 .......... .......... .......... .......... .......... .......... 7861 .......... .......... .......... .......... .......... .......... 7921 .......... .......... .......... .......... .......... .......... 7981 .......... .......... .......... .......... .......... .......... 8041 .......... .......... .......... .......... .......... .......... 8101 .......... .......... .......... .......... .......... .......... 8161 .......... .......... .......... .......... .......... .......... 8221 .......... .......... .......... .......... .......... .......... 8281 .......... .......... .......... .......... .......... .......... 8341 .......... .......... .......... .......... .......... .......... 8401 .......... .......... .......... .......... .......... .......... 8461 .......... .......... .......... .......... .......... .......... 8521 .......... .......... .......... .......... .......... .......... 8581 .......... .......... .......... .......... .......... .......... 8641 .......... .......... .......... .......... .......... .......... 8701 .......... .......... .......... .......... .......... .......... 8761 .......... .......... .......... .......... .......... .......... 8821 .......... .......... .......... .......... .......... .......... 8881 .......... .......... .......... .......... .......... .......... 8941 .......... .......... .......... .......... .......... .......... 9001 .......... .......... .......... .......... .......... .......... 9061 .......... .......... .......... .......... .......... .......... 9121 .......... .......... .......... .......... .......... .......... 9181 .......... .......... .......... .......... .......... .......... 9241 .......... .......... .......... .......... .......... .......... 9301 .......... .......... .......... .......... .......... .......... 9361 .......... .......... .......... .......... .......... .......... 9421 .......... .......... .......... .......... .......... .......... 9481 .......... .......... .......... .......... .......... .......... 9541 .......... .......... .......... .......... .......... .......... 9601 .......... .......... .......... .......... .......... .......... 9661 .......... .......... .......... .......... .......... .......... 9721 .......... .......... .......... .......... .......... .......... 9781 .......... .......... .......... .......... .......... .......... 9841 .......... .......... .......... .......... .......... .......... 9901 .......... .......... .......... .......... .......... .......... 9961 .......... .......... .......... .......... .......... .......... 10021 .......... .......... .......... .......... .......... .......... 10081 .......... .......... .......... .......... .......... .......... 10141 .......... .......... .......... .......... .......... .......... 10201 .......... .......... .......... .......... .......... .......... 10261 .......... .......... .......... .......... .......... .......... 10321 .......... .......... .......... .......... .......... .......... 10381 .......... .......... .......... .......... .......... .......... 10441 .......... .......... .......... .......... .......... .......... 10501 .......... .......... .......... .......... .......... .......... 10561 .......... .......... .......... .......... .......... .......... 10621 .......... .......... .......... .......... .......... .......... 10681 .......... .......... .......... .......... .......... .......... 10741 .......... .......... .......... ||||| // LOCUS mt.C.aur.1 10775 bp RNA RNA 04-JUL-1998 DEFINITION Mitochondrion Carassius auratus.; NADH dehydrogenase subunit 1; tRNA-Pro; tRNA-Thr; cytochrome b; tRNA-Glu; NADH dehydrogenase subunit 6; NADH hydrogenase subunit 5; tRNA-Leu(CUN); tRNA-Ser(AGY) ; tRNA-His; NADH dehydrogenase subunit 4; tRNA-Arg; tRNA-Gly; cytochrome c oxidase subunit III; ATPase 6; ATPase 8; tRNA-Lys; cytochrome c oxidase subunit II; tRNA-Asp; tRNA-Ser(UCN); cytochrome c oxidase subunit I; tRNA-Tyr; tRNA-Cys; tRNA-Asn; tRNA-Ala; tRNA-Trp; NADH dehydrogenase subunit 4L; NADH dehydrogenase subunit 3; NADH dehydrogenase subunit 2; tRNA-Met; tRNA-Gln; tRNA-Ile; tRNA-Leu(UUR); 16S ribosomal RNA; tRNA-Val; 12S ribosomal RNA; tRNA-Phe. ACCESSION AB006953 KEYWORDS NADH dehydrogenase subunit 1; tRNA-Pro; tRNA-Thr; cytochrome b; tRNA-Glu; NADH dehydrogenase subunit 6; NADH hydrogenase subunit 5; tRNA-Leu(CUN); tRNA-Ser(AGY); tRNA-His; NADH dehydrogenase subunit 4; tRNA-Arg; tRNA-Gly; cytochrome c oxidase subunit III; ATPase 6; ATPase 8; tRNA-Lys; cytochrome c oxidase subunit II; tRNA-Asp; tRNA-Ser(UCN); cytochrome c oxidase subunit I; tRNA-Tyr; tRNA-Cys; tRNA-Asn; tRNA-Ala; tRNA-Trp; NADH dehydrogenase subunit 4L; NADH dehydrogenase subunit 3; NADH dehydrogenase subunit 2; tRNA-Met; tRNA-Gln; tRNA-Ile; tRNA-Leu(UUR); 16S ribosomal RNA; tRNA-Val; 12S ribosomal RNA; tRNA-Phe. SOURCE Mitochondrion Carassius auratus. ORGANISM Mitochondrion Carassius auratus. REFERENCE 1 (sites) AUTHORS Murakami,M., Yamashita,Y. and Fujitani,H. TITLE ) The complete sequence of mitochondrial genome from a gynogenetic triploid 'ginbuna' (Carassius auratus langsdorfi JOURNAL Zool. Sci. (1998) In press STANDARD No information REFERENCE 2 (bases 1 to 16578) AUTHORS Murakami,M. TITLE Direct Submission JOURNAL Submitted (29-AUG-1997) to the DDBJ/EMBL/GenBank databases. Masaru Murakami, Azabu University School of Veterinary Medicine, Laboratory of Molecular Biology; 1-17-71 Fuchinobe, Sagamihara, Kanagawa 229-8501, Japan (E-mail:murakami@azabu-u.ac.jp, Tel: 0427-54-7111, Fax: 0427-53-3395) STANDARD No information COMMENTS Sequence information (bases 1 to 10775) Corresponding GenBank entry: AB006953 BASE COUNT 608 a 387 c 345 g 342 t 9093 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~G C--------- ----caaaca 301 |gcu--agc| uua------- -|-------- ---------- ---------| -----(---- 361 ---------) -|-------- -------|-- -------(-- ---------- ---------- 421 -------)-- ---------- ---------- ---------- ---------- -----(---- 481 )---|----- --(-----)- ---------- ---------- ---------- -(------)- 541 ---------- ---------- ---- ---------- |-----AAAU 841 UAA(AUCA)U UCU------- ---------- ---------- ---------- --------uu 901 ------(--- --)------- |uac-cugA- -GUAU-G(-G GAGA)CAGAA -aaggu---- 961 -------<-- --ucca---- ---------- ---------- ---------- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- --->------ 1201 ---------- ---------- ---------- ---------< ---------- ---------- 1261 ---------- ---------- ---------> (------)-- ---------- ---|-(---) 1321 -------(-- -----)---- ---------- ---------- ---------- --<------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- >--------- ------(--- ---------- 1561 -------)-- ---------- ---------- -(-------) ---------- ---------- 1621 ---------- C-AAAGCAAU AGAA-AC--- ---AGUACC( -GCAA-)GGG ---AAA-GC- 1681 ugaaagagaa gugaaauaac ccaua----- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- -----uaa-G C-AAAA GCAAAG---- --------<- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------> (--auuaaac 2041 --)------- -----CUU-G UACCUU(UU- GCAUC)AUGA |UUU-AGCCA GUaca--cc- 2101 caagcaaag- ---------- -------(-- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- -)-------- ---------- 2521 ----(----- )-----<--- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- agac->---- --(------) ---------- ---------- -cuuuaguuu 2701 gaa-acCCCG AA-ACCAG-G UG-AGCUACC CCG-AGA-CA GCCU------ ---------- 2761 -(-------- ---------- ---------- ---------- ----auuga) ---------- 2821 -GGGCCAA-C CC-GUCUCU( GUGGCAA-A) AGAG-UGGGA --AGAGCUC- CGGGUAG-AA 2881 GU(G-ACAG) ACC-UACC-G A-ACCUGGUG AUAGCU-GGU UGCCU--AAG AA-AUG-GAU 2941 (-AGAA)GUU CA-GC-CUCG UACU<----- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ------->-- ---|------ 3061 -|------|- ---------- ---------- --------(- --------)< ccccaaauca 3121 agua-----a acauuaacaa gacaaca--- ---------- ---------- ---------- 3181 ----agagaa au-------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---->----- ---------- 3301 ---------- ---------- ----|----- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ------AC-A -CGAG-AGUU AGUUA--AA- GG-GG(-GUA 3481 CAG)CCCCUU UG-AC----- -aAAGG(AUA -CAA)CCU-u ucuag-g-ag -ga-UAA--- 3541 --agaucaua auacaua-a- aacaua---- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ------cugu u<-------- ---------- ---------- 3721 ---------- ---------- ---------- ---------- -->CUAGU-G GGC(CUAAAA 3781 GC-A)-GCCA -CCUA|-(a- ac)a|GAAAG C(--GUUAAA )GC|-UCAg- acag--<--- 3841 --acagaagu uuauuauccu gauaauaua- ---------- ---------- ---------- 3901 ->-------- -------|-- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- ---------- 4021 ---------- ---------- ---------- ---------- ---------- ---------- 4081 -------|uc ucac--ucc| c--c-ua|-- ---------- ---------- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- ---------- ---------- ---------- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ----aauacu aUUAG-GC|- CA-ACCCAUG ---------- 4501 ---------- ---------- (ccca---)< ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ------->-- ---------- ---------| cAUGGAAGAG AUUAUGC-UA 4681 AA|AUGAGUA -ACAA-GAA- gg-------- (-cccgcccu ---------- ---------- 4741 ---------- -----)---- ---uc-|ucc ----aa-GCA CAA--gugua a|----gcca 4801 aauc----gg ---------- ----(--acu ag)c-c|--a uuggca---- ---------- 4861 ---acuaa-- -cga------ ---------- -------(-- ---------- ------)<-- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 >--------- ---------- ---------- ----(----- ---------- ---------- 5041 ---------- ---------- ----)----- |-----|--- ---------- |--<------ 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ---------- ---------- 5221 ---------- ---------- ---------- ---------- ---------- ---------- 5281 ---------- ---------- ---------- ---------- ---------- ---------- 5341 ---------- ---------- ---------- ---------- ---------- ---------- 5401 ---------- ---------- ------->-- ---------- ---------- ---------- 5461 -----(---- ------)--- ---|------ --------|- ---------- -(-----)-- 5521 |--------- ---------- ---------- -----(---- )--------- ---------- 5581 --<------- ---------- ---------- ---------- ---------- ---------- 5641 ---------- ---------- ------->-- ---------- ---------- ---<------ 5701 ---------a cucaacccaa gagagcaaug ugguauuaca aaaaaaccua gaaaaaccca 5761 caaccuaagu a--------- ---------- ---------- ---------- ---------- 5821 ---------- ---------- ---------- ---------- ---------- ---------- 5881 ---------- ---------- ---------- ---------- ---------- ---------- 5941 ---------- ---------- ---------- ---------- ---------- ---------- 6001 ---------- ---------- ---------- ---------- ---------- ---------- 6061 ---------- ---------- ---------- ---------- ---------- ---------- 6121 ---------- ---------- ---------- ---------- ---------- ---------- 6181 ---------- ---------- ---------- ---------- ---------- ---------- 6241 ---------- ---------- ---------- ---------- ---------- ---------- 6301 ---------- ---------- ---------- ---------- ---------- ---------- 6361 ---------- ---------- ---------- ---------- ---------- ---------- 6421 ---------- ---------- ------>--- ---------- ---------- --ucgu-|-- 6481 ---UACCCC- -(CACACU)G G|AGUGC--- ----(aacaa a-----)--- -----ggaa| 6541 |---AGAC-U A--AAAGAAA -AGGA-AGGA ACUCGGCAAA ---------- ---------- 6601 ---------- ---------- ---------- ---------- ---------- ---------- 6661 ---------- ---------- ---------- ---------- ---------- ---------- 6721 ---------- ---------- ---------- ---------- ---------- ---------- 6781 ------(--- )--------c acAAGCCU|C GC---CUG-U UU(ACCAA)A AA-CAUC-GC 6841 CUCCUG|C-- ---------- ---------- (aacacaacc aa----)--- ---------- 6901 ------GUA- UAG-GAGGUC CAGCCU<--- ---------- ---------- ---------- 6961 ---------- ---------- -------->G CC-CA-GU|G AC-------- ---------- 7021 ---------- --(------- ---------- ---------- ---------- ---------- 7081 ---------- ---------- --------ua caa)------ ---------- ---------| 7141 ---GUUC-AA C-|GG-C|-C -GCGGU-(AU -UUUG)ACCG UG|C(AAA)- GG-UAGCGCA 7201 AUC-AC-U-U |GUCUUU(-U AAAU-)AGAG AC|CU-GUAU GAAUGGCUAA A-CGAGGGCU 7261 UA-------- ---------- -------ACU GUCUCCCCUU UCCA-GU-CA ----GUGAAA 7321 UU|G|AUCUA CC-CG(U-GC AGAAG)CGGG UAU----AAU AAUACAAGAC GAGAAG-ACC 7381 CUUUGG-|-A GCUUA--AGG UA|-caaaac uca--a---| <--------- ---------- 7441 ---------- ---------- --->------ ---------- ---------- ---------- 7501 ---------- ---------- ---------- --<------- ------ccac guuaa-gcaa 7561 cu-caauaaa aaaugaaaac uuuguggaau a--------- ---------- ---------- 7621 ---------- ---------- ---------> --(------- -)-------- ---------- 7681 ---------- -------|-- ---------- ---------- ---------- ---------- 7741 -----(---- ----)----- ---------- ---------- ---------- --------<- 7801 ---------- ---------- ---------- ---------- ---------- ---------- 7861 ---------- ---------- ---------- ---------- ---------- ---------- 7921 ---------- ---------- ---------- ---------- ---------- ---------- 7981 ---------- ---------- ---------- ---------- ---------- ---------- 8041 ---------- ---------- ---------- ---------- ---------- ---------- 8101 ---------- ---------- ----->---- ----u-gaga uuu---U-AC CUUCGGUUG( 8161 GGG)CG-AC- C|ACGGAG(- --------GA AAAAAAAGC- )CUCC-AG|G |u|gg---|< 8221 ---------- ---------- ---------- ---------- ---------- ---------- 8281 ---------- ---------- ---------- ---------- ---------- ------accg 8341 ggagaauu-- uccua----- ---------- ---------- ---------- ->-------- 8401 ---------- ---------- ---------- ---------- ---------- ---------- 8461 ---------- ---------- ---------- ---------- ---------- ---------- 8521 ---------- ---------- ---------- ---------- ---------- ---------- 8581 ---------- ---------- ---------- ---------- ---------- ---------- 8641 ---------- ---------- ---------- ---------- ---------- ---------- 8701 ---------- ---------- ---------- ---------- --|------- ---------- 8761 --------aa acuaa-gag( -agacau--- )cucua-agc -cacagaaca ucug------ 8821 ---------- ---------- ---------- ---------- ---------- --------ac 8881 c|---aaaua UGAUC-cggc u--------- ---------- ---(------ ---------- 8941 ---------- ---------- ---------- ---------- ------aaua ca)--|--AG 9001 CCGAUCAAC- |GAA-CCAAG UUACCC|UAG G|GAUAACAG |C-GCA-A-U CCUCUCCCAG 9061 AG(U--CCAU )AUCGACGAG --GGGGUUUA CG-ACCUCGA UGUU|GG--A U|C|AGGAC| 9121 AU-CC-UAAU GG-UG(--CA -GC)CGCUAU UAAG-GGU|U CGUU(UGUUC )AACGA-UUA 9181 A--AGUCCU- --ACGUGAUC UGAGUUCAGA CC|GG-A(GC AA)UCCAGGU CAGUUUCUAU 9241 CU|GUA---- --|-|<---- ---------- ---------- ---------- -----acgc- 9301 >--------- ---------- -uA-CUU-UU CC--(UAGU- AC(-GAAA)G GAUC-)GGAA 9361 A--AG-- ggggcca-au gc-------- 9421 -|-------- (-----) 9541 ---------- ---------- gcac-gcccc acc------- ---------- -------ccu 9601 ---------- ---aauuuau (gaaaac--a aauaa)a-ua -aa-auaaag g--------- 9661 ---------- ---------| ------(--- )--------- -------|gg 9961 cc-(gaaaua a--)-ggaca u~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10021 ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~~~ 10141 ~~~~~~~~~~ ~~~~~~~~~~ ~)~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10201 ~~~~~~~~~~ ~|~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10321 ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ||||| // LOCUS mt.C.aur.2 10775 bp RNA RNA 11-JAN-191 DEFINITION Mitochondrion Carassius auratus. ACCESSION No information KEYWORDS No information. SOURCE Mitochondrion Carassius auratus. ORGANISM Mitochondrion Carassius auratus. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 10775) Corresponding GenBank entry: S50055 LOCUS S50055 1626 bp rRNA VRT 10-FEB-1993 DEFINITION large ribosomal RNA [goldfish, rRNA Mitochondrial, 1626 nt]. ACCESSION S50055 KEYWORDS . SOURCE goldfish. ORGANISM Unknown. Unclassified. REFERENCE 1 (bases 1 to 1626) AUTHORS Peng,G., Taylor,J.D. and Tchen,T.T. TITLE Increased mitochondrial activities in pigmented (melanized) fish cells and nucleotide sequence of mitochondrial large rRNA JOURNAL Biochem. Biophys. Res. Commun. 189 (1), 445-449 (1992) MEDLINE 93080595 REMARK GenBank staff at the National Library of Medicine created this entry [NCBI gibbsq 119190] from the original journal article. This sequence comes from Fig. 1. COMMENT NCBI gi: 260861 FEATURES Location/Qualifiers source 1..1626 /organism="unknown" /mitochondrion /note="goldfish" CDS 712..1212 /note="Description: orf" /codon_start=1 /transl_table=2 misc_feature 1..1212 /note="Description: large ribosomal RNA" BASE COUNT 586 a 370 c 339 g 331 t ORIGIN BASE COUNT 586 a 370 c 339 g 331 t 9149 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 |~~~~~~~~| ~~~~~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~~(~~~~ 361 ~~~~~~~~~) ~|~~~~~~~~ ~~~~~~~|~~ ~~~~~~~(~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~)~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~(~~~~ 481 )~~~|~~~~~ ~~(~~~~~)~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~~~)~ 541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~<~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~>~ ~~~~~~~~~~ |~~~~~~~AU 841 UAA(AUCA)U UCU------- ---------- ---------- ---------- --------uu 901 ------(--- --)------- |uac-cugA- -GUAU-G(-G GCGA)CAGAA -aaggu---- 961 -------<-- --ucca---- ---------- ---------- ---------- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- --->------ 1201 ---------- ---------- ---------- ---------< ---------- ---------- 1261 ---------- ---------- ---------> (------)-- ---------- ---|-(---) 1321 -------(-- -----)---- ---------- ---------- ---------- --<------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- >--------- ------(--- ---------- 1561 -------)-- ---------- ---------- -(-------) ---------- ---------- 1621 ---------- C-AAAGCGAU AGAA-AU--- ---AGUACC( -GCAA-)GGG ---AAA-GC- 1681 ugaaagagaa augaaauaac ccaua----- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- -----uaa-G C-AAAA GCAAAG---- --------<- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------> (--auuaaac 2041 --)------- -----CUU-G UACCUU(UU- GCAUC)AUGA |UUU-AGCCA GUaca--cc- 2101 caagcaaag- ---------- -------(-- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- -)-------- ---------- 2521 ----(----- )-----<--- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- agac->---- --(------) ---------- ---------- -cuuuaguuu 2701 gaa-acCCCG AA-GCCAG-G UG-AGCUACC CCG-AGA-CA GCCU------ ---------- 2761 -(-------- ---------- ---------- ---------- ----auuga) ---------- 2821 -GGGCCAA-C CC-GUCUCU( GUGGCAA-A) AGAG-UGGGA --AGAGCUC- CGGGUAG--A 2881 GU(G-ACAG) ACC-UACC-G A-ACCUGGUG AUAGCU-GGU UGCCU--AAG AA-AUG-GAU 2941 (-AGAA)GUU CA-GC-CUCG UACU<----- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ------->-- ---|------ 3061 -|------|- ---------- ---------- --------(- --------)< ccccaaauca 3121 aaua-----a acauuaauaa gacaaca--- ---------- ---------- ---------- 3181 ----agagaa ac-------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---->----- ---------- 3301 ---------- ---------- ----|----- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ------AU-A -CGAG-AGUU AGUUA--AA- GG-GG(-GUA 3481 CAG)CCCUUU -G-AC----- -aAAGG(AUA -CAA)CCU-u ucuag-g-ag -ga-UAA--- 3541 --agaucaua auacaua-a- aacaua---- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ------cugu u<-------- ---------- ---------- 3721 ---------- ---------- ---------- ---------- -->CUAGU-G GGC(CUAAAA 3781 GC-A)GGCCA -CCUA|G(A- UA)-|GAAAG C(--GUUAA- )GC|-UCAg- acag--<--- 3841 --auagaagu uuauuauccu gauaauaua- ---------- ---------- ---------- 3901 ->-------- -------|-- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- ---------- 4021 ---------- ---------- ---------- ---------- ---------- ---------- 4081 -------|uc uuac--ucc| c--c-ua|-- ---------- ---------- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- ---------- ---------- ---------- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ----aauacu aUUAG-GC|- CA-ACCCAUG ---------- 4501 ---------- ---------- (ccca---)< ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ------->-- ---------- ---------| CAUGGAAGAG AUUAUGC-UA 4681 AA|AUGAGUA -ACAA-GAA- gg-------- (-cccgcccu ---------- ---------- 4741 ---------- -----)---- ---uc-|ucc ----aa-GCA CAA--gugua a|----gcca 4801 aauc----gg ---------- ----(--aca ag)c-c|--a uuggca---- ---------- 4861 ---acuaa-- -cga------ ---------- -------(-- ---------- ------)<-- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 >--------- ---------- ---------- ----(----- ---------- ---------- 5041 ---------- ---------- ----)----- |-----|--- ---------- |--<------ 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ---------- ---------- 5221 ---------- ---------- ---------- ---------- ---------- ---------- 5281 ---------- ---------- ---------- ---------- ---------- ---------- 5341 ---------- ---------- ---------- ---------- ---------- ---------- 5401 ---------- ---------- ------->-- ---------- ---------- ---------- 5461 -----(---- ------)--- ---|------ --------|- ---------- -(-----)-- 5521 |--------- ---------- ---------- -----(---- )--------- ---------- 5581 --<------- ---------- ---------- ---------- ---------- ---------- 5641 ---------- ---------- ------->-- ---------- ---------- ---<------ 5701 ---------- acucaaccaa agagagcaau gugguaucac aaaaaaccua gaaaaaccca 5761 caaccuaaau a--------- ---------- ---------- ---------- ---------- 5821 ---------- ---------- ---------- ---------- ---------- ---------- 5881 ---------- ---------- ---------- ---------- ---------- ---------- 5941 ---------- ---------- ---------- ---------- ---------- ---------- 6001 ---------- ---------- ---------- ---------- ---------- ---------- 6061 ---------- ---------- ---------- ---------- ---------- ---------- 6121 ---------- ---------- ---------- ---------- ---------- ---------- 6181 ---------- ---------- ---------- ---------- ---------- ---------- 6241 ---------- ---------- ---------- ---------- ---------- ---------- 6301 ---------- ---------- ---------- ---------- ---------- ---------- 6361 ---------- ---------- ---------- ---------- ---------- ---------- 6421 ---------- ---------- ------>--- ---------- ---------- --ucgu-|-- 6481 ---UACCCC- -(CACGCU)G G|AGUGC--- ----(aacaa a-----)--- -----ggaa| 6541 |---AGAC-U A--AAAGAAA -AGGA-AGGA ACUCGGCAAA ---------- ---------- 6601 ---------- ---------- ---------- ---------- ---------- ---------- 6661 ---------- ---------- ---------- ---------- ---------- ---------- 6721 ---------- ---------- ---------- ---------- ---------- ---------- 6781 ------(--- )--------c acAAGCCU|C GC---CUG-U UU(ACCAA)A AA-CAUC-GC 6841 CUCCUG|C-- ---------- ---------- (aacacaacc aa----)--- ---------- 6901 ------GUA- UAG-GAGGUC CAGCCU<--- ---------- ---------- ---------- 6961 ---------- ---------- -------->G CC-CA-GU|G AC-------- ---------- 7021 ---------- --(------- ---------- ---------- ---------- ---------- 7081 ---------- ---------- --------ua caa)------ ---------- ---------| 7141 ---GUUC-AA C-|GG-C|-C -GCGGU-(AU -UUUG)ACCG UG|C(AAA)- GG-UAGCGCA 7201 AUC-AC-U-U |GUCUUU(-U AAUU-)AGAG AC|CU-GUAU GAAUGGCUAA A-CGAGGGCU 7261 UA-------- ---------- -------ACU GUCUCCCCUU UCCA-GU-CA ----GUGAAA 7321 UU|G|AUCUA CC-CG(U-GC AGAAG)CGGG UAU----AAU AAUACAAGAC GAGAAG-ACC 7381 CUUUGG-|-A GCUUA--AGG UA|-caaaac uca--a---| <--------- ---------- 7441 ---------- ---------- --->------ ---------- ---------- ---------- 7501 ---------- ---------- ---------- --<------- ------ccac guuaa-gcaa 7561 cu-caauaaa aagugaaaac uuuguggaac a--------- ---------- ---------- 7621 ---------- ---------- ---------> --(------- -)-------- ---------- 7681 ---------- -------|-- ---------- ---------- ---------- ---------- 7741 -----(---- ----)----- ---------- ---------- ---------- --------<- 7801 ---------- ---------- ---------- ---------- ---------- ---------- 7861 ---------- ---------- ---------- ---------- ---------- ---------- 7921 ---------- ---------- ---------- ---------- ---------- ---------- 7981 ---------- ---------- ---------- ---------- ---------- ---------- 8041 ---------- ---------- ---------- ---------- ---------- ---------- 8101 ---------- ---------- ----->---- ----u-gaga uuu---U-AC CUUCGGUUG( 8161 GGG)CG-AC- C|ACGGAG(- --------GA AAAAAAAGC- )CUCC-AG|G |u|gg---|< 8221 ---------- ---------- ---------- ---------- ---------- ---------- 8281 ---------- ---------- ---------- ---------- ---------- ------aacg 8341 ggaaaauu-- uccua----- ---------- ---------- ---------- ->-------- 8401 ---------- ---------- ---------- ---------- ---------- ---------- 8461 ---------- ---------- ---------- ---------- ---------- ---------- 8521 ---------- ---------- ---------- ---------- ---------- ---------- 8581 ---------- ---------- ---------- ---------- ---------- ---------- 8641 ---------- ---------- ---------- ---------- ---------- ---------- 8701 ---------- ---------- ---------- ---------- --|------- ---------- 8761 --------aa acuaa-gag( -agacau--- )cucua-agc -cacagaaca ucug------ 8821 ---------- ---------- ---------- ---------- ---------- --------ac 8881 c|---aaaua UGAUC-cggc u--------- ---------- ---(------ ---------- 8941 ---------- ---------- ---------- ---------- -------aau ac)--|--AG 9001 CCGAUCAAC- |GAA-CCAAG UUACCC|UAG G|GAUAACAG |C-GCA-A-U CCUCUCCCAG 9061 AG(U--CCAU )AUCGACGAG --GGGGUUUA CG-ACCUCGA UGUU|GG--A U|C|AGGAC| 9121 AU-CC-UAAU GG-U-(--CA -GC)CGCUAU UAAG-GGU|U CGUC(UGUUC )AACGA-UUA 9181 A--AGUCCU- --ACGUGAUC UGAGUUCAGA CC|GG-A(GC AA)UCCAGGU CAGUUUCUAU 9241 CU|GUA---- --|-|<---- ---------- ---------- ---------- -----acgc- 9301 >--------- ---------- --u-CUU-UU CC--(U-GU- GC(--AAA)G GAUC-)GGAA 9361 A--AG-- ggggcca-au gc-------- 9421 -|-------- (-----) 9541 ---------- ---------- gcac-gcccc acc------- ---------- -------ccu 9601 ---------- ---aauuuau (gaaaac--a aauaa)a-ua -aa-auaaag g--------- 9661 ---------- ---------| ------(--- )--------- -------|gg 9961 cc-(aaaaua a--)-ggaca uacuggaaaa aaaaaaaaaa aaaaa~~~~~ ~~~~~~~~~~ 10021 ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~~~ 10141 ~~~~~~~~~~ ~~~~~~~~~~ ~)~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10201 ~~~~~~~~~~ ~|~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10321 ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ||||| // LOCUS mt.C.carpi 10775 bp RNA RNA 29-JUL-1994 DEFINITION Mitochondrion Cyprinus carpio.; 12S ribosomal RNA; 16S ribosomal RNA homologue; ATPase 6; ATPase 8; cytochrome b; cytochrome oxidase I; cytochrome oxidase II; cytochrome oxidase III; NADH-ubiquinone oxidoreductase subunit 1; NADH-ubiquinone oxidoreductase subunit 2; NADH-ubiquinone oxidoreductase subunit 3; NADH-ubiquinone oxidoreductase subunit 4; NADH-ubiquinone oxidoreductase subunit 4L; NADH-ubiquinone oxidoreductase subunit 5; NADH-ubiquinone oxidoreductase subunit 6; transfer RNA-Ala; transfer RNA-Arg; transfer RNA-Asn; transfer RNA-Asp; transfer RNA-Cys; transfer RNA-Gln; transfer RNA-Glu; transfer RNA-Gly; transfer RNA-His; transfer RNA-Ile; transfer RNA-Leu; transfer RNA-Lys; transfer RNA-Met; transfer RNA-Phe; transfer RNA-Pro; transfer RNA-Ser; transfer RNA-Thr; transfer RNA-Trp; transfer RNA-Tyr; transfer RNA-Val. ACCESSION X61010 KEYWORDS 12S ribosomal RNA; 16S ribosomal RNA homologue; ATPase 6; ATPase 8; cytochrome b; cytochrome oxidase I; cytochrome oxidase II; cytochrome oxidase III; NADH-ubiquinone oxidoreductase subunit 1; NADH-ubiquinone oxidoreductase subunit 2; NADH-ubiquinone oxidoreductase subunit 3; NADH-ubiquinone oxidoreductase subunit 4; NADH-ubiquinone oxidoreductase subunit 4L; NADH-ubiquinone oxidoreductase subunit 5; NADH-ubiquinone oxidoreductase subunit 6; transfer RNA-Ala; transfer RNA-Arg; transfer RNA-Asn; transfer RNA-Asp; transfer RNA-Cys; transfer RNA-Gln; transfer RNA-Glu; transfer RNA-Gly; transfer RNA-His; transfer RNA-Ile; transfer RNA-Leu; transfer RNA-Lys; transfer RNA-Met; transfer RNA-Phe; transfer RNA-Pro; transfer RNA-Ser; transfer RNA-Thr; transfer RNA-Trp; transfer RNA-Tyr; transfer RNA-Val. SOURCE Mitochondrion Cyprinus carpio. ORGANISM Mitochondrion Cyprinus carpio. REFERENCE 1 (bases 1 to 16575) AUTHORS Huang,F.l. TITLE Direct Submission JOURNAL Chemistry, Academia Sinica, P O Box 23-106, Taipei, Taiwan Submitted (09-JUL-1991) F.L. Huang, Institute of Biological STANDARD No information REFERENCE 2 (bases 1 to 16575) AUTHORS Huang,F.l. TITLE Direct Submission JOURNAL Submitted (20-DEC-1993) F.L. Huang, Institute of Biological Chemistry, Academia Sinica, P O Box 23-106, Taipei, Taiwan STANDARD No information REFERENCE 3 (bases 1 to 16575) AUTHORS Chang,Y.S., Huang,F.L. and Lo,T.B. TITLE The complete nucleotide sequence and gene organization of carp (Cyprinus carpio) mitochondrial genome JOURNAL J. Mol. Evol. 38 (2), 138-155 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 10775) Corresponding GenBank entry: X61010 On Dec 30, 1993 this sequence version replaced gi:12833. See X00918 and X17006 for overlapping sequences. BASE COUNT 615 a 397 c 335 g 334 t 9094 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~G C--------- ----caaaca 301 |GCU--AGC| UUA------- -|-------- ---------- ---------| -----(---- 361 ---------) -|-------- -------|-- -------(-- ---------- ---------- 421 -------)-- ---------- ---------- ---------- ---------- -----(---- 481 )---|----- --(-----)- ---------- ---------- ---------- -(------)- 541 ---------- ---------- ---- ---------- |-----AAAC 841 UAA(ACCA)U UUU------- ---------- ---------- ---------- --------uu 901 ------(--- --)------- |uac-cuGA- -GUAU-G(-G GAGA)CAGAA -Aaggu---- 961 -------<-- --uccac--- ---------- ---------- ---------- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- --->------ 1201 ---------- ---------- ---------- ---------< ---------- ---------- 1261 ---------- ---------- ---------> (------)-- ---------- ---|-(---) 1321 -------(-- -----)---- ---------- ---------- ---------- --<------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- >--------- ------(--- ---------- 1561 -------)-- ---------- ---------- -(-------) ---------- ---------- 1621 ---------- A-AA-GCGAU AGAA-AU--- ---AGUACC( -GCAA-)GGG ---AAA-GC- 1681 UGaaagagaa augaaauaac ccaua----- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- -----uaa-G C-AAAA GCAAAG---- --------<- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------> (--auuaaac 2041 --)------- -----CUC-G UACCUU(UU- GCAUC)AUGA |UUU-AGCCA GUaca--cc- 2101 caagcaaag- ---------- -------(-- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- -)-------- ---------- 2521 ----(----- )-----<--- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- agac->---- --(------) ---------- ---------- -cuuuaguuu 2701 gaa-acCCCG AA-ACCAG-G UG-AGCUACC CCG-AGA-CA GCCU------ ---------- 2761 -(-------- ---------- ---------- ---------- ----auuau) ---------- 2821 -GGCCCAC-C CC-GUCUCU( GUGGCAA-A) AGAG-UGGGA --AGAGCUC- CGGGUAG-AA 2881 GU(G-ACAG) ACC-UACC-G A-ACCUGGUG AUAGCU-GGU UGCCU--AAG AA-AUG-AAU 2941 (-AGAA)GUU CA-GC-CUCG UGCA<----- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ------->-- ---|------ 3061 -|------|- ---------- ---------- --------(- --------)< ccucaaauca 3121 caca-----a acaaaacaag acuaaga--- ---------- ---------- ---------- 3181 ----gaaac- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---->----- ---------- 3301 ---------- ---------- ----|----- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ------AC-A -UGAG-AGUU AGUUA--AA- GG-GG(-GUA 3481 CAG)CCCCUU UA-AC----- -aAAGG(ACA -CAA)CCU-u uccag-g-ag -ga-UAA--- 3541 --agaucaua auacaua-a- aacaua---- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ------cugu u<-------- ---------- ---------- 3721 ---------- ---------- ---------- ---------- -->CUAGU-G GGC(CUAAAA 3781 GC-A)-GCCA -UCUA|A(A- CA)-|GAAAG C(--GUUAAA )GC|-UCAg- acag--<--- 3841 --aaaaaagu uuauuauccc gauaaaaaa- ---------- ---------- ---------- 3901 ->-------- -------|-- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- ---------- 4021 ---------- ---------- ---------- ---------- ---------- ---------- 4081 -------|uc uuac--ucc| c--c-ua|-- ---------- ---------- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- ---------- ---------- ---------- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ----aauacu aUUAG-GC|- CA-ACCCAUG ---------- 4501 ---------- ---------- (cccc---)< ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ------->-- ---------- ---------| CAUGGAAGAG AUUAUGC-UA 4681 AA|AUGAGUA -ACAA-GAA- gg-------- (-cccgc--- ---------- ---------- 4741 ---------- -----)---- ---cc-|uuc uuccaa-gaA CAA--gugua a|----gcca 4801 aacc----gg ---------- ----(--acc aa)c-c|--a uuggca---- ---------- 4861 ---acuaa-- -cga------ ---------- -------(-- ---------- ------)<-- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 >--------- ---------- ---------- ----(----- ---------- ---------- 5041 ---------- ---------- ----)----- |-----|--- ---------- |--<------ 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ---------- ---------- 5221 ---------- ---------- ---------- ---------- ---------- ---------- 5281 ---------- ---------- ---------- ---------- ---------- ---------- 5341 ---------- ---------- ---------- ---------- ---------- ---------- 5401 ---------- ---------- ------->-- ---------- ---------- ---------- 5461 -----(---- ------)--- ---|------ --------|- ---------- -(-----)-- 5521 |--------- ---------- ---------- -----(---- )--------- ---------- 5581 --<------- ---------- ---------- ---------- ---------- ---------- 5641 ---------- ---------- ------->-- ---------- ---------- ---<------ 5701 ---------- acucaaucaa agagagcaau gugaauuaca aaaaaaccca agaaaaaucc 5761 acaacuaagc ua-------- ---------- ---------- ---------- ---------- 5821 ---------- ---------- ---------- ---------- ---------- ---------- 5881 ---------- ---------- ---------- ---------- ---------- ---------- 5941 ---------- ---------- ---------- ---------- ---------- ---------- 6001 ---------- ---------- ---------- ---------- ---------- ---------- 6061 ---------- ---------- ---------- ---------- ---------- ---------- 6121 ---------- ---------- ---------- ---------- ---------- ---------- 6181 ---------- ---------- ---------- ---------- ---------- ---------- 6241 ---------- ---------- ---------- ---------- ---------- ---------- 6301 ---------- ---------- ---------- ---------- ---------- ---------- 6361 ---------- ---------- ---------- ---------- ---------- ---------- 6421 ---------- ---------- ------>--- ---------- ---------- --ucg--|-- 6481 -u-UACCCC- -(CACACU)G G|AGUGC--- ----(ccuaa ------)--- ----aggaa| 6541 |---AGAC-U A--AAAGAAA -AGGA-AGGA ACUCGGCAAA ---------- ---------- 6601 ---------- ---------- ---------- ---------- ---------- ---------- 6661 ---------- ---------- ---------- ---------- ---------- ---------- 6721 ---------- ---------- ---------- ---------- ---------- ---------- 6781 ------(--- )--------c aCAAGCCU|C GC---CUG-U UU(ACCAA)A AA-CAUC-GC 6841 CUCCUG|C-- ---------- ---------- (-aacgaacc aa----)--- ---------- 6901 ------GUA- UAG-GAGGUC CAGCCU<--- ---------- ---------- ---------- 6961 ---------- ---------- -------->G CC-CA-GU|G AC-------- ---------- 7021 ---------- --(------- ---------- ---------- ---------- ---------- 7081 ---------- ---------- --------ua caa)------ ---------- ---------| 7141 ---GUUC-AA C-|GG-C|CC GGCGGUU(AU -UUUG)ACCG UG|C(AAA)- GG-UAGCGCA 7201 AUC-AC-U-U |GUCUUU(-U AAAU-)AGAG AC|CU-GUAU GAAUGGCUAA A-CGAGGGCU 7261 UA-------- ---------- -------ACU GUCUCCCCUU UCAA-GU-CA ----GUGAAA 7321 UU|G|AUCUA CC-CG(U-GC AGAAG)CGGG UAU----AAU ACUACAAGAC GAGAAG-ACC 7381 CUUUGG-|-A GCUUA--AGG UA|--c-aaa acu--ca--| <--------- ---------- 7441 ---------- ---------- --->------ ---------- ---------- ---------- 7501 ---------- ---------- ---------- --<--accac -guuaagcaa --cuc-aaua 7561 aa-aagcaa- aaacc--uu- -guggauca- ---------- ---------- ---------- 7621 ---------- ---------- ---------> --(------- -)-------- ---------- 7681 ---------- -------|-- ---------- ---------- ---------- ---------- 7741 -----(---- ----)----- ---------- ---------- ---------- --------<- 7801 ---------- ---------- ---------- ---------- ---------- ---------- 7861 ---------- ---------- ---------- ---------- ---------- ---------- 7921 ---------- ---------- ---------- ---------- ---------- ---------- 7981 ---------- ---------- ---------- ---------- ---------- ---------- 8041 ---------- ---------- ---------- ---------- ---------- ---------- 8101 ---------- ---------- ----->---- --uga-g-au -uu---U-AC CUUCGGUUG( 8161 GGG)CG-AC- C|ACGGAG(- --------GA AAGAAAAGC- )CUCC-AG|G |u|gg---|< 8221 ---------- ---------- ---------- ---------- ---------- ---------- 8281 ---------- ---------- ---------- ---------- ---------- -------acu 8341 gggaaaacc- uccuaaa--- ---------- ---------- ---------- ->-------- 8401 ---------- ---------- ---------- ---------- ---------- ---------- 8461 ---------- ---------- ---------- ---------- ---------- ---------- 8521 ---------- ---------- ---------- ---------- ---------- ---------- 8581 ---------- ---------- ---------- ---------- ---------- ---------- 8641 ---------- ---------- ---------- ---------- ---------- ---------- 8701 ---------- ---------- ---------- ---------- --|------- ---------- 8761 ---------- accaa-gag( -agacau--- )cucua-agc --acagaaca ucug------ 8821 ---------- ---------- ---------- ---------- ---------- --------ac 8881 c|---aaaua UGAUC-cggc ua-------- ---------- ---(------ ---------- 8941 ---------- ---------- ---------- ---------- -------aca ca)--|-uaG 9001 CCGAUCAAC- |GAA-CCAAG UUACCC|UAG G|GAUAACAG |C-GCA-A-U CCUCUCCCAG 9061 AG(U--CCAU )AUCGACGAG --GGGGUUUA CG-ACCUCGA UGUU|GG--A U|C|AGGAC| 9121 AU-CC-UAAU GG-UG(--CA -GC)CGCUAU UAAG-GGU|U CGUU(UGUUC )AACGA-UUA 9181 A--AGUCCU- --ACGUGAUC UGAGUUCAGA CC|GG-A(GC AA)UCCAGGU CAGUUUCUAU 9241 CU|GUA---- --|-|<---- ---------- ---------- ---------- ----acgcu- 9301 >--------- ---------- --A-CUU-UU CC--(UAGU- AC(-GAAA)G GAUC-)GGAA 9361 A--AG-- ggggccc-au ac-------- 9421 -|-------- (-----) 9541 ---------- ---------- gcac-gcccc acc------- ---------- -------ccu 9601 ---------- ---aauuuau (gaaaac--a aauaa)a-ua -aa-auaaag g--------- 9661 ---------- ---------| ------(--- )--------- -------|gg 9961 cc-(aaaaua a--)-ggaca ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10021 ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~~~ 10141 ~~~~~~~~~~ ~~~~~~~~~~ ~)~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10201 ~~~~~~~~~~ ~|~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10321 ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ||||| // LOCUS mt.A.bjoer 10775 bp RNA RNA 02-JUN-1998 DEFINITION Mitochondrion Abramis bjoerkna.; . ACCESSION AF0384 8 KEYWORDS . SOURCE Mitochondrion Abramis bjoerkna. ORGANISM Mitochondrion Abramis bjoerkna. REFERENCE 1 (bases 1 to 2717) AUTHORS Simons,A.M. and Mayden,R.L. TITLE Mitochondrial 12S and 16S Ribosomal RNA Sequences Phylogenetic Relationships of the Western North American Phoxinins (Actinopterygii: Cyprinidae) as Inferred from JOURNAL Mol. Phylogenet. Evol. (1998) In press STANDARD No information REFERENCE 2 (bases 1 to 2717) AUTHORS Simons,A.M. and Mayden,R.L. TITLE Direct Submission JOURNAL Submitted (15-DEC-1997) Department of Biological Sciences, The University of Alabama, Box 870344, Tuscaloosa, AL 35487-0344, USA STANDARD No information COMMENTS Sequence information (bases 1 to 10775) Corresponding GenBank entry: AF038468 BASE COUNT 585 a 393 c 368 g 362 t 9067 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~ug caaauuggau ca-cccugaG C--------- ----caacca 301 |gcu--agc| uu-------- -|-------- ---------- ---------| -----(---- 361 ---------) -|-------- -------|-- -------(-- ---------- ---------- 421 -------)-- ---------- ---------- ---------- ---------- -----(---- 481 )---|----- --(-----)- ---------- ---------- ---------- -(------)- 541 ---------- ---------- ---- ---------- |------aac 841 uAA(ACCA)U UCU------- ---------- ---------- ---------- --------uu 901 ------(--- --)------- |uac-cuaA- -GUAC-G(-G GAGA)CGGAA -aaggu---- 961 -------<-- --ucaaccu- ---------- ---------- ---------- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- --->------ 1201 ---------- ---------- ---------- ---------< ---------- ---------- 1261 ---------- ---------- ---------> (------)-- ---------- ---|-(---) 1321 -------(-- -----)---- ---------- ---------- ---------- --<------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- >--------- ------(--- ---------- 1561 -------)-- ---------- ---------- -(-------) ---------- ---------- 1621 ---------- --AAAGCAAU AGAG-AA--- ---AGUACC( -GCAA-)GG- ---AAA-GC- 1681 ugaaagagaa gugaaacaac ccaua----- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- -----uaa-G C-AAAA ACAAAG---- --------<- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------> (--acuaaac 2041 --)------- -----CUU-G UACCUU(UU- GCAUC)AUGA |UUU-AGCCA GCacc--cu- 2101 caagcgaag- ---------- -------(-- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- -)-------- ---------- 2521 ----(----- )-----<--- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- agac->---- --(------) ---------- ---------- -cuuuaguuu 2701 gaa-acCCCG AA-ACCAG-G UG-AGCUACC CCG-AGA-CA GCCU------ ---------- 2761 -(-------- ---------- ---------- --------au guuaauuua) ---------- 2821 -GGGCUAA-C CC-GUCUCU( GUGGCAA-A) AGAG-UGGGA --AGAGCUC- CGGGUAG-AA 2881 GU(G-ACAG) ACC-UACC-G A-ACCUGGUG AUAGCU-GGU UGCCU--GAG AA-GUG-GAU 2941 (-AGAA)GUU CA-GC-CUCA UAUA<----- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ------->-- ---|------ 3061 -|------|- ---------- ---------- --------(- --------)< uccccaaacc 3121 aaag-----a auacaccacu aagguacuc- ---------- ---------- ---------- 3181 ----agggua au-------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---->----- ---------- 3301 ---------- ---------- ----|----- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ------AU-A -CGAG-AGUU AGUUG--AA- GG-GG(-GUA 3481 CAG)CCCCUU UA-AC----- -aAAGG(AUA -CAA)CCU-u uacag-g-ag -ga-UAA--- 3541 --agaucaua auauaua-a- aacaca---- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ------cugu u<-------- ---------- ---------- 3721 ---------- ---------- ---------- ---------- -->CUAGU-G GGC(CUAAAG 3781 GC-A)-GCCA -cCUA|A(A- CA)-|GAAAG C(--GUUAAA )GC|-UCAg- acag--<--- 3841 --aaggaagu uuauuauacc gauaaaaaa- ---------- ---------- ---------- 3901 ->-------- -------|-- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- ---------- 4021 ---------- ---------- ---------- ---------- ---------- ---------- 4081 -------|uc uuau--ucc| c--c-ua|-- ---------- ---------- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- ---------- ---------- ---------- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- -----auugu auCAG-GC|- CA-ACCCAUG ---------- 4501 ---------- ---------- (ccaa---)< ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ------->-- ---------- ---------| CAUGGAAGAG AUUAUGC-UA 4681 AA|AUGAGUA -ACAA-GAA- ga-------- (-cuugcucu ---------- ---------- 4741 ---------- -----)---- ---uc-|ucc ----ca-GCA CAA--gugua a|----acca 4801 gauc----gg ---------- ----(--acu aa)c-c|--a cuggaa---- ---------- 4861 ---uuuaa-- -cga------ ---------- -------(-- ---------- ------)<-- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 >--------- ---------- ---------- ----(----- ---------- ---------- 5041 ---------- ---------- ----)----- |-----|--- ---------- |--<------ 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ---------- ---------- 5221 ---------- ---------- ---------- ---------- ---------- ---------- 5281 ---------- ---------- ---------- ---------- ---------- ---------- 5341 ---------- ---------- ---------- ---------- ---------- ---------- 5401 ---------- ---------- ------->-- ---------- ---------- ---------- 5461 -----(---- ------)--- ---|------ --------|- ---------- -(-----)-- 5521 |--------- ---------- ---------- -----(---- )--------- ---------- 5581 --<------- ---------- ---------- ---------- ---------- ---------- 5641 ---------- ---------- ------->-- ---------- ---------- ---<------ 5701 ---------- acccaaccaa agaggguagu gugaacuaua cagaccucaa gaaaaacuca 5761 ca-gcuaaau aa-------- ---------- ---------- ---------- ---------- 5821 ---------- ---------- ---------- ---------- ---------- ---------- 5881 ---------- ---------- ---------- ---------- ---------- ---------- 5941 ---------- ---------- ---------- ---------- ---------- ---------- 6001 ---------- ---------- ---------- ---------- ---------- ---------- 6061 ---------- ---------- ---------- ---------- ---------- ---------- 6121 ---------- ---------- ---------- ---------- ---------- ---------- 6181 ---------- ---------- ---------- ---------- ---------- ---------- 6241 ---------- ---------- ---------- ---------- ---------- ---------- 6301 ---------- ---------- ---------- ---------- ---------- ---------- 6361 ---------- ---------- ---------- ---------- ---------- ---------- 6421 ---------- ---------- ------>--- ---------- ---------- --ucgu-|-- 6481 ---UAACCC- -(CACACU)G G|AGUGC--- ----(uauuu uuaag-)--- -----ggaa| 6541 |---AGAC-U A--AAAGAAG -GGGA-AGGA ACUCGGCAAA ---------- ---------- 6601 ---------- ---------- ---------- ---------- ---------- ---------- 6661 ---------- ---------- ---------- ---------- ---------- ---------- 6721 ---------- ---------- ---------- ---------- ---------- ---------- 6781 ------(--- )--------c acAAGCCU|C GC---CUG-U UU(ACCAA)A AA-CAUC-GC 6841 CUCCUG|C-- ---------- ---------- (aacuacauu ga----)--- ---------- 6901 ------GUA- UAG-GAGGUC CAGCCU<--- ---------- ---------- ---------- 6961 ---------- ---------- -------->G CC-CA-GU|G AC-------- ---------- 7021 ---------- --(------- ---------- ---------- ---------- ---------- 7081 ---------- ---------- --------ua cgg)------ ---------- ---------| 7141 ---GUUC-AA C-|GG-C|-C -GCGGU-(AU -UUUG)ACCG UG|C(AAA)- GG-UAGCGCA 7201 AUC-AC-U-U |GUCUCU(-U AAAU-)AGAG AC|CU-GUAU GAAUGGCUAG A-CGAGGGCU 7261 UA-------- ---------- -------ACU GUCUCCCCCC UCCA-GU-CA ----GUGAAA 7321 UU|G|AUCUA UC-CG(U-GC AGAAG)CGGG UAU----AAC UAUACAAGAC GAGAAG-ACC 7381 CUUUGG-|-A GCUUA--AGG UA|-ca-aau uca--a---| <--------- ---------- 7441 ---------- ---------- --->------ ---------- ---------- ---------- 7501 ---------- ---------- ---------- --<------- ------ccac guuaa-acga 7561 cu-ccauaga aagcaagaac uuaguggcga a--------- ---------- ---------- 7621 ---------- ---------- ---------> --(------- -)-------- ---------- 7681 ---------- -------|-- ---------- ---------- ---------- ---------- 7741 -----(---- ----)----- ---------- ---------- ---------- --------<- 7801 ---------- ---------- ---------- ---------- ---------- ---------- 7861 ---------- ---------- ---------- ---------- ---------- ---------- 7921 ---------- ---------- ---------- ---------- ---------- ---------- 7981 ---------- ---------- ---------- ---------- ---------- ---------- 8041 ---------- ---------- ---------- ---------- ---------- ---------- 8101 ---------- ---------- ----->---- ----u-gaaa uuu---U-AC CUUCGGUUG( 8161 GGG)CG-AC- C|ACGGAG(- --------GA GAAAGAAGC- )CUCC-GA|G |u|gg---|< 8221 ---------- ---------- ---------- ---------- ---------- ---------- 8281 ---------- ---------- ---------- ---------- ---------- ------acug 8341 ggcuaaa--- cccua----- ---------- ---------- ---------- ->-------- 8401 ---------- ---------- ---------- ---------- ---------- ---------- 8461 ---------- ---------- ---------- ---------- ---------- ---------- 8521 ---------- ---------- ---------- ---------- ---------- ---------- 8581 ---------- ---------- ---------- ---------- ---------- ---------- 8641 ---------- ---------- ---------- ---------- ---------- ---------- 8701 ---------- ---------- ---------- ---------- --|------- ---------- 8761 --------aa gccaa-gag( -auacau--- )cuaca-agc -cgcagaaca ucug------ 8821 ---------- ---------- ---------- ---------- ---------- --------ac 8881 c|---aauaa UGAUC-cgac u--------- ---------- ---(------ ---------- 8941 ---------- ---------- ---------- ---------- --------ga aa)--|--ag 9001 ccgAUCAAC- |GAA-CCAAG UUACCC|UAG G|GAUAACAG |C-GCA-A-U CCUCUCCCAG 9061 AG(U--CCAU )AUCGACGAG --GGGGUUUA CG-ACCUCGA UGUU|GG--A U|C|AGGAC| 9121 AU-CC-UAAU GG-UG(--CA -GC)CGCUAU UAAG-GGU|U CGUU(UGUUC )AACGA-UUA 9181 A--AGUCCU- --ACGUGAUC UGAGUUCAGA CC|GG-A(GC AA)UCCAGGU CAGUUUCUAU 9241 CU|GUA---- --|-|<---- ---------- ---------- ---------- -----gcgc- 9301 >--------- ---------- -uA-CUU-UU CC--(UAGU- AC(-GAAA)G GAUC-)GGAA 9361 A--AG-- ggggccc-au ac-------- 9421 -|-------- (-----) 9541 ---------- ---------- gcau-gcccc acc------- ---------- -------ccu 9601 ---------- ---aauugau (gaaaac--a aauaa)a-uu -aa-guaaag g--------- 9661 ---------- ---------| ------(--- )--------- -------|gu 9961 cc-(gaaaga a--)-ggaca ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10021 ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~~~ 10141 ~~~~~~~~~~ ~~~~~~~~~~ ~)~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10201 ~~~~~~~~~~ ~|~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10321 ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ||||| // LOCUS mt.A.aluta 10775 bp RNA RNA 02-JUN-1998 DEFINITION Mitochondrion Acrocheilus alutaceus.; . ACCESSION AF0384 9 KEYWORDS . SOURCE Mitochondrion Acrocheilus alutaceus. ORGANISM Mitochondrion Acrocheilus alutaceus. REFERENCE 1 (bases 1 to 1764) AUTHORS Simons,A.M. and Mayden,R.L. TITLE Phoxinins (Actinopterygii: Cyprinidae) as Inferred from Mitochondrial 12S and 16S Ribosomal RNA Sequences Phylogenetic Relationships of the Western North American JOURNAL Mol. Phylogenet. Evol. (1998) In press STANDARD No information REFERENCE 2 (bases 1 to 1764) AUTHORS Simons,A.M. and Mayden,R.L. TITLE Direct Submission JOURNAL Submitted (15-DEC-1997) Department of Biological Sciences, The University of Alabama, Box 870344, Tuscaloosa, AL 35487-0344, USA STANDARD No information COMMENTS Sequence information (bases 1 to 10775) Corresponding GenBank entry: AF038469 BASE COUNT 592 a 380 c 367 g 372 t 9064 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~ug caaauuggau cg-cccugaG C--------- ----caaaca 301 |gcu--agc| uu-------- -|-------- ---------- ---------| -----(---- 361 ---------) -|-------- -------|-- -------(-- ---------- ---------- 421 -------)-- ---------- ---------- ---------- ---------- -----(---- 481 )---|----- --(-----)- ---------- ---------- ---------- -(------)- 541 ---------- ---------- ---- ---------- |------aac 841 uAA(ACCA)U UUU------- ---------- ---------- ---------- --------uu 901 ------(--- --)------- |uac-cuaA- -GUAC-G(-G GAGA)CGGAA -aaggu---- 961 -------<-- --ucaaccu- ---------- ---------- ---------- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- --->------ 1201 ---------- ---------- ---------- ---------< ---------- ---------- 1261 ---------- ---------- ---------> (------)-- ---------- ---|-(---) 1321 -------(-- -----)---- ---------- ---------- ---------- --<------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- >--------- ------(--- ---------- 1561 -------)-- ---------- ---------- -(-------) ---------- ---------- 1621 ---------- --AAAGCAAU AGAG-AA--- ---AGUACC( -GCAA-)GG- ---AAA-GC- 1681 ugaaagagaa augaaacaac ccaua----- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- -----uaa-G C-AGAA ACAAAG---- --------<- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------> (--acuaaac 2041 --)------- -----CUU-G UACCUU(UU- GCAUC)AUGA |UUU-AGCCA GCacc--cu- 2101 caagcaaag- ---------- -------(-- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- -)-------- ---------- 2521 ----(----- )-----<--- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- agac->---- --(------) ---------- ---------- -cuuuaguuu 2701 gaa-acCCCG AA-ACCAG-G UG-AGCUACC CCG-AGA-CA GCCU------ ---------- 2761 -(-------- ---------- ---------- --------au auu-auuua) ---------- 2821 -GGGCUAA-C CC-GUCUCU( GUGGCAA-A) AGAG-UGGGA --AGAGCUC- CGGGUAG-AA 2881 GU(G-ACAG) ACC-UACC-G A-ACCUGGUG AUAGCU-GGU UGUCU--GAG AA-GUG-GAU 2941 (-AGAA)GUU CA-GC-CUCA UACG<----- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ------->-- ---|------ 3061 -|------|- ---------- ---------- --------(- --------)< ccccagauca 3121 a--------- -cauguaua- uuauu-a--- ---------- ---------- ---------- 3181 ----agauac uaagggaaau a--------- ---------- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---->----- ---------- 3301 ---------- ---------- ----|----- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- -------u-a -uGAG-AGUU AGUUG--AA- AG-GG(-GUA 3481 CAG)CCCUUU UA-AC----- -aAAGG(AUA -CAA)CCU-u uacag-g-ag -ga-UAA--- 3541 --agaucaua auauaua-a- aacaua---- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ------cugu u<-------- ---------- ---------- 3721 ---------- ---------- ---------- ---------- -->UUAGU-G GGC(CUAAAA 3781 GC-A)-GCCA -cCUA|A(A- UA)-|GAAAG C(--GUUAAA )GC|-uCag- acag--<--- 3841 --aaggaagu uuauuauacc gauaaaaaa- ---------- ---------- ---------- 3901 ->-------- -------|-- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- ---------- 4021 ---------- ---------- ---------- ---------- ---------- ---------- 4081 -------|uc uuau--ucc| c--c-ua|-- ---------- ---------- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- ---------- ---------- ---------- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- -----auuau auCAG-AU|- CA-ACCCAUG ---------- 4501 ---------- ---------- (ccca---)< ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ------->-- ---------- ---------| CAUGGGAGAG AUUAUGC-UA 4681 GA|AUGAGUA -ACAA-GAA- ga-------- (-ccugcacu ---------- ---------- 4741 ---------- -----)---- ---uc-|ucc ----uu-GCA CAA--gugua a|----gcca 4801 gauc----gg ---------- ----(--aca aa)c-c|--a cuggaa---- ---------- 4861 ---uuuaa-- -cga------ ---------- -------(-- ---------- ------)<-- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 >--------- ---------- ---------- ----(----- ---------- ---------- 5041 ---------- ---------- ----)----- |-----|--- ---------- |--<------ 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ---------- ---------- 5221 ---------- ---------- ---------- ---------- ---------- ---------- 5281 ---------- ---------- ---------- ---------- ---------- ---------- 5341 ---------- ---------- ---------- ---------- ---------- ---------- 5401 ---------- ---------- ------->-- ---------- ---------- ---------- 5461 -----(---- ------)--- ---|------ --------|- ---------- -(-----)-- 5521 |--------- ---------- ---------- -----(---- )--------- ---------- 5581 --<------- ---------- ---------- ---------- ---------- ---------- 5641 ---------- ---------- ------->-- ---------- ---------- ---<------ 5701 ---------- acccaaccca agagggcaau gug-aacaac aaaaauaucg aagaagaauu 5761 cacaauuaaa cuga------ ---------- ---------- ---------- ---------- 5821 ---------- ---------- ---------- ---------- ---------- ---------- 5881 ---------- ---------- ---------- ---------- ---------- ---------- 5941 ---------- ---------- ---------- ---------- ---------- ---------- 6001 ---------- ---------- ---------- ---------- ---------- ---------- 6061 ---------- ---------- ---------- ---------- ---------- ---------- 6121 ---------- ---------- ---------- ---------- ---------- ---------- 6181 ---------- ---------- ---------- ---------- ---------- ---------- 6241 ---------- ---------- ---------- ---------- ---------- ---------- 6301 ---------- ---------- ---------- ---------- ---------- ---------- 6361 ---------- ---------- ---------- ---------- ---------- ---------- 6421 ---------- ---------- ------>--- ---------- ---------- --ucgu-|-- 6481 ---UAACCC- -(CACACU)G G|AGUGC--- ----(cauuu uauaaa)--- -----ggaa| 6541 |---AGAC-U A--AAAGGUG -GGAA-AGGA ACUCGGCAAA ---------- ---------- 6601 ---------- ---------- ---------- ---------- ---------- ---------- 6661 ---------- ---------- ---------- ---------- ---------- ---------- 6721 ---------- ---------- ---------- ---------- ---------- ---------- 6781 ------(--- )--------c acAAGCCU|C GC---CUG-U UU(ACCAA)A AA-CAUC-GC 6841 CUCCUG|C-- ---------- ---------- (aacuaaauu ga----)--- ---------- 6901 ------GUA- UAG-GAGGUC CAGCCU<--- ---------- ---------- ---------- 6961 ---------- ---------- -------->G CC-CA-GU|G AC-------- ---------- 7021 ---------- --(------- ---------- ---------- ---------- ---------- 7081 ---------- ---------- --------ua cgg)------ ---------- ---------| 7141 ---GUUC-AA C-|GG-C|-C -GCGGU-(AU -UUUG)ACCG UG|C(AAA)- GG-UAGCGCA 7201 AUC-AC-U-U |GUCUCU(-U AAAU-)AGAG AC|CU-GUAU GAAUGGCUAG A-CGAGGGCU 7261 UA-------- ---------- -------ACU GUCUCCCCCA CCAA-GU-CA ----GUGAAA 7321 UU|G|AUCUA UC-CG(U-GC AGAAG)CGGG UAU----GAC UAUACAAGAC GAGAAG-ACC 7381 CUUUGG-|-A GCUUA--AGG UA|-ca-agu uua--c---| <--------- ---------- 7441 ---------- ---------- --->------ ---------- ---------- ---------- 7501 ---------- ---------- ---------- --<------- ------ccac guuaa-acaa 7561 cu-ccauaaa aaguaagaac uuaguggcaa a--------- ---------- ---------- 7621 ---------- ---------- ---------> --(------- -)-------- ---------- 7681 ---------- -------|-- ---------- ---------- ---------- ---------- 7741 -----(---- ----)----- ---------- ---------- ---------- --------<- 7801 ---------- ---------- ---------- ---------- ---------- ---------- 7861 ---------- ---------- ---------- ---------- ---------- ---------- 7921 ---------- ---------- ---------- ---------- ---------- ---------- 7981 ---------- ---------- ---------- ---------- ---------- ---------- 8041 ---------- ---------- ---------- ---------- ---------- ---------- 8101 ---------- ---------- ----->---- ----u-agaa uuu---U-AC CUUCGGUUG( 8161 GGG)CG-AC- C|ACGGAG(- --------GA AAAACAAGC- )CUCC-GA|G |u|gg---|< 8221 ---------- ---------- ---------- ---------- ---------- ---------- 8281 ---------- ---------- ---------- ---------- ---------- ------acug 8341 ggguaaac-- cccua----- ---------- ---------- ---------- ->-------- 8401 ---------- ---------- ---------- ---------- ---------- ---------- 8461 ---------- ---------- ---------- ---------- ---------- ---------- 8521 ---------- ---------- ---------- ---------- ---------- ---------- 8581 ---------- ---------- ---------- ---------- ---------- ---------- 8641 ---------- ---------- ---------- ---------- ---------- ---------- 8701 ---------- ---------- ---------- ---------- --|------- ---------- 8761 --------aa gcuaa-uag( -aaacau--- )cugua-agc -cgcagaaug ucug------ 8821 ---------- ---------- ---------- ---------- ---------- --------ac 8881 c|---aaaaa UGAUC-cgac c--------- ---------- ---(------ ---------- 8941 ---------- ---------- ---------- ---------- -------cca ga)--|--gg 9001 ucgAUCAAC- |GAA-CCAAG UUACCC|UAG G|GAUAACAG |C-GCA-A-U CCCCUCCCAG 9061 AG(U--CCAU )AUCGACGAG --GGGGUUUA CG-ACCUCGA UGUU|GG--A U|C|AGGAC| 9121 AU-CC-UAAU GG-UG(--CA -GC)CGCUAU UAAG-GGG|U CGUU(UGUUC )AACGA-UUA 9181 A--AGUCCU- --ACGUGAUC UGAGUUCAGA CC|GG-A(GC AA)UCCAGGU CAGUUUCUAU 9241 CU|GUA---- --|-|<---- ---------- ---------- ---------- -----acgc- 9301 >--------- ---------- -uA-CUU-UU CC--(UAGU- AC(-GAAA)G GAUU-)GGAA 9361 A--AG-- ggggccc-au ac-------- 9421 -|-------- (-----) 9541 ---------- ---------- gcac-gcccc gcc------- ---------- -------cca 9601 ---------- ---aauuaau (gaaaac--a aauaa)a-uu -aa-guaaag g--------- 9661 ---------- ---------| ------(--- )--------- -------|gu 9961 uc-(aagaua a--)-ggaca ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10021 ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~~~ 10141 ~~~~~~~~~~ ~~~~~~~~~~ ~)~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10201 ~~~~~~~~~~ ~|~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10321 ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ||||| // LOCUS mt.C.plumb 10775 bp RNA RNA 02-JUN-1998 DEFINITION Mitochondrion Couesius plumbeus.; . ACCESSION AF0384 0 KEYWORDS . SOURCE Mitochondrion Couesius plumbeus. ORGANISM Mitochondrion Couesius plumbeus. REFERENCE 1 (bases 1 to 1756) AUTHORS Simons,A.M. and Mayden,R.L. TITLE Phoxinins (Actinopterygii: Cyprinidae) as Inferred from Mitochondrial 12S and 16S Ribosomal RNA Sequences Phylogenetic Relationships of the Western North American JOURNAL Mol. Phylogenet. Evol. (1998) In press STANDARD No information REFERENCE 2 (bases 1 to 1756) AUTHORS Simons,A.M. and Mayden,R.L. TITLE Direct Submission JOURNAL Submitted (15-DEC-1997) Department of Biological Sciences, The University of Alabama, Box 870344, Tuscaloosa, AL 35487-0344, USA STANDARD No information COMMENTS Sequence information (bases 1 to 10775) Corresponding GenBank entry: AF038470 BASE COUNT 579 a 404 c 358 g 362 t 9072 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~ug caaauuggau ca-cccugaG C--------- ----caacca 301 |gcu--agc| uu-------- -|-------- ---------- ---------| -----(---- 361 ---------) -|-------- -------|-- -------(-- ---------- ---------- 421 -------)-- ---------- ---------- ---------- ---------- -----(---- 481 )---|----- --(-----)- ---------- ---------- ---------- -(------)- 541 ---------- ---------- ---- ---------- |------aac 841 uAA(ACCA)U UUU------- ---------- ---------- ---------- --------uu 901 ------(--- --)------- |uac-cugA- -GUAU-G(-G GAGA)CAGAA -aaggu---- 961 -------<-- --ucca---- ---------- ---------- ---------- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- --->------ 1201 ---------- ---------- ---------- ---------< ---------- ---------- 1261 ---------- ---------- ---------> (------)-- ---------- ---|-(---) 1321 -------(-- -----)---- ---------- ---------- ---------- --<------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- >--------- ------(--- ---------- 1561 -------)-- ---------- ---------- -(-------) ---------- ---------- 1621 --------CC C-GAAGCAAU AGAA-AA--- ---AGUACC( -GCAA-)GG- ---AAA-GC- 1681 ugaaagagaa augaaauaac ccaua----- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- -----uaa-G C-AAAA ACAAAG---- --------<- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------> (--acuaaac 2041 --)------- -----CUU-G UACCUU(UU- GCAUC)AUGA |UUU-AGCCA GCacc--cu- 2101 caagcaaag- ---------- -------(-- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- -)-------- ---------- 2521 ----(----- )-----<--- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- agac->---- --(------) ---------- ---------- -cuuuaguuu 2701 gaa-gcCCCG AA-ACCAA-G UG-AGCUACC CCG-AGA-CA GCCU------ ---------- 2761 -(-------- ---------- ---------- --------au auuaaucua) ---------- 2821 -GGGCUAA-C CC-GUCUCU( GUGGCAA-A) AGAG-UGGGA --AGAGCUC- CGGGUAG-AA 2881 GU(G-ACAG) ACC-UACC-G A-ACUUGGUG AUAGCU-GGU UGCCU--GAG AA-GUG-GAU 2941 (-AGAA)GUU CA-GC-CUCG CACA<----- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ------->-- ---|------ 3061 -|------|- ---------- ---------- --------(- --------)< ccccaaacca 3121 -aua-----a a--u--aua- u-cauua--- ---------- ---------- ---------- 3181 ----agauac uaagggaaau a--------- ---------- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---->----- ---------- 3301 ---------- ---------- ----|----- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- -------u-g -CGAG-AGUU AGUUG--AA- GG-GG(-GUA 3481 CAG)CCCCUU UA-AC----- -aAAGG(AUA -CAA)CCU-u cacag-g-ag -ga-UAA--- 3541 --agaucaua guacaca-a- aacaua---- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ------cugu u<-------- ---------- ---------- 3721 ---------- ---------- ---------- ---------- -->CUAGU-G GGC(CUAAAA 3781 GC-A)-GCCA -cCUA|A(A- CA)-|GAAAG C(--GUUAAA )GC|-uCcg- acag--<--- 3841 --agagaagu uuauuauauc gauaagaaa- ---------- ---------- ---------- 3901 ->-------- -------|-- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- ---------- 4021 ---------- ---------- ---------- ---------- ---------- ---------- 4081 -------|uc uuau--ucc| c--c-ua|-- ---------- ---------- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- ---------- ---------- ---------- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- -----aguau auCAG-AC|- CA-ACCCAUG ---------- 4501 ---------- ---------- (cccc---)< ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ------->-- ---------- ---------| CAUGGAAGAG AUUAUGC-UA 4681 AA|AUGAGUA -ACAA-GAA- ga-------- (-ccugcucu ---------- ---------- 4741 ---------- -----)---- ---uc-|ucc ----ca-GCA CAC--gugua a|----acca 4801 gauu----gg ---------- ----(--acc aa)c-c|--a cuggac---- ---------- 4861 ---cuuaa-- -cga------ ---------- -------(-- ---------- ------)<-- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 >--------- ---------- ---------- ----(----- ---------- ---------- 5041 ---------- ---------- ----)----- |-----|--- ---------- |--<------ 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ---------- ---------- 5221 ---------- ---------- ---------- ---------- ---------- ---------- 5281 ---------- ---------- ---------- ---------- ---------- ---------- 5341 ---------- ---------- ---------- ---------- ---------- ---------- 5401 ---------- ---------- ------->-- ---------- ---------- ---------- 5461 -----(---- ------)--- ---|------ --------|- ---------- -(-----)-- 5521 |--------- ---------- ---------- -----(---- )--------- ---------- 5581 --<------- ---------- ---------- ---------- ---------- ---------- 5641 ---------- ---------- ------->-- ---------- ---------- ---<------ 5701 ---------- acccaaccca agaggguagu gugaauaaua agaaccucaa gaagaccuca 5761 caccc-aaau a--------- ---------- ---------- ---------- ---------- 5821 ---------- ---------- ---------- ---------- ---------- ---------- 5881 ---------- ---------- ---------- ---------- ---------- ---------- 5941 ---------- ---------- ---------- ---------- ---------- ---------- 6001 ---------- ---------- ---------- ---------- ---------- ---------- 6061 ---------- ---------- ---------- ---------- ---------- ---------- 6121 ---------- ---------- ---------- ---------- ---------- ---------- 6181 ---------- ---------- ---------- ---------- ---------- ---------- 6241 ---------- ---------- ---------- ---------- ---------- ---------- 6301 ---------- ---------- ---------- ---------- ---------- ---------- 6361 ---------- ---------- ---------- ---------- ---------- ---------- 6421 ---------- ---------- ------>--- ---------- ---------- --ucgu-|-- 6481 ---UAACCC- -(CACACU)G G|CGUGC--- ----(uauuu a-aaa-)--- -----ggaa| 6541 |---AGAC-U A--AAAGAAA -GGGA-AGGA ACUCGGCAAA ---------- ---------- 6601 ---------- ---------- ---------- ---------- ---------- ---------- 6661 ---------- ---------- ---------- ---------- ---------- ---------- 6721 ---------- ---------- ---------- ---------- ---------- ---------- 6781 ------(--- )--------c acAAGCCU|C GC---CUG-U UU(ACCAA)A AA-CAUC-GC 6841 CUCCUG|C-- ---------- ---------- (aacuauuaa ------)--- ---------- 6901 ------GUA- UAG-GAGGUC CAGCCU<--- ---------- ---------- ---------- 6961 ---------- ---------- -------->G CC-CA-GU|G AC-------- ---------- 7021 ---------- --(------- ---------- ---------- ---------- ---------- 7081 ---------- ---------- --------ua cgg)------ ---------- ---------| 7141 ---GUUC-AA C-|GG-C|-C -GCGGU-(AU -CUUG)ACCG UG|C(AAA)- GG-UAGCGCA 7201 AUC-AC-U-U |GUCUCU(-U AAAU-)AGAG AC|CU-GUAU GAAUGGCUAG A-CGAGGGCU 7261 UA-------- ---------- -------ACU GUCUCCCCCU UCCA-GU-CA ----GUGAAA 7321 UU|G|AUCUA UC-CG(U-GC AGAAG)CGGG UAU----AAA UCUACAAGAC GAGAAG-ACC 7381 CUUUGG-|-A GCUUA--AGG UA|-caaaac uca--a---| <--------- ---------- 7441 ---------- ---------- --->------ ---------- ---------- ---------- 7501 ---------- ---------- ---------- --<------- ------ccac guuaa-acaa 7561 cu-cuauaaa aaguaagaac uuaguggccu g--------- ---------- ---------- 7621 ---------- ---------- ---------> --(------- -)-------- ---------- 7681 ---------- -------|-- ---------- ---------- ---------- ---------- 7741 -----(---- ----)----- ---------- ---------- ---------- --------<- 7801 ---------- ---------- ---------- ---------- ---------- ---------- 7861 ---------- ---------- ---------- ---------- ---------- ---------- 7921 ---------- ---------- ---------- ---------- ---------- ---------- 7981 ---------- ---------- ---------- ---------- ---------- ---------- 8041 ---------- ---------- ---------- ---------- ---------- ---------- 8101 ---------- ---------- ----->---- ----u-gaga uuu---U-AC CUUCGGUUG( 8161 GGG)CG-AC- C|ACGGAG(- --------GA AAAAUGAGC- )CUCC-GA|G |u|gg---|< 8221 ---------- ---------- ---------- ---------- ---------- ---------- 8281 ---------- ---------- ---------- ---------- ---------- ------acug 8341 ggccaaau-- cccua----- ---------- ---------- ---------- ->-------- 8401 ---------- ---------- ---------- ---------- ---------- ---------- 8461 ---------- ---------- ---------- ---------- ---------- ---------- 8521 ---------- ---------- ---------- ---------- ---------- ---------- 8581 ---------- ---------- ---------- ---------- ---------- ---------- 8641 ---------- ---------- ---------- ---------- ---------- ---------- 8701 ---------- ---------- ---------- ---------- --|------- ---------- 8761 --------aa uccga-aag( -agacau--- )cuuua-ggc -cacagaaua ucug------ 8821 ---------- ---------- ---------- ---------- ---------- --------ac 8881 c|---aauaa UGAUC-cg-c u--------- ---------- ---(------ ---------- 8941 ---------- ---------- ---------- ---------- -------caa au)--|---g 9001 ccgAUCAAC- |GAA-CCAAG UUACCC|UAG G|GAUAACAG |C-GCA-A-U CCUCUCCCAG 9061 AG(C--CCGU )AUCGACGAG --GGGGUUUA CG-ACCUCGA UGUU|GG--A U|C|AGGAC| 9121 AU-CC-UAAU GG-UG(--CA -GC)CGCUAU UAAG-GGU|U CGUU(UGUUC )AACGA-UUA 9181 A--AGUCCU- --ACGUGAUC UGAGUUCAGA CC|GG-A(GU AA)UCCAGGU CAGUUUCUAU 9241 CU|GUA---- --|-|<---- ---------- ---------- ---------- -----acgc- 9301 >--------- ---------- -uA-CUU-UU CC--(UAGU- AC(-GAAA)G GAUC-)GGAA 9361 A--AG-- ggggccc-au ac-------- 9421 -|-------- (-----) 9541 ---------- ---------- gcau-gcccc gcc------- ---------- -------ccu 9601 ---------- ---aauucau (gaaaac--a aauaa)a-uu -aa-guaaag g--------- 9661 ---------- ---------| ------(--- )--------- -------|gc 9961 cc-(uaaaua a--)-ggaca ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10021 ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~~~ 10141 ~~~~~~~~~~ ~~~~~~~~~~ ~)~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10201 ~~~~~~~~~~ ~|~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10321 ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ||||| // LOCUS mt.E.acros 10775 bp RNA RNA 02-JUN-1998 DEFINITION Mitochondrion Eremichthys acros.; . ACCESSION AF0384 1 KEYWORDS . SOURCE Mitochondrion Eremichthys acros. ORGANISM Mitochondrion Eremichthys acros. REFERENCE 1 (bases 1 to 2655) AUTHORS Simons,A.M. and Mayden,R.L. TITLE Phylogenetic Relationships of the Western North American Phoxinins (Actinopterygii: Cyprinidae) as Inferred from Mitochondrial 12S and 16S Ribosomal RNA Sequences JOURNAL Mol. Phylogenet. Evol. (1998) In press STANDARD No information REFERENCE 2 (bases 1 to 2655) AUTHORS Simons,A.M. and Mayden,R.L. TITLE Direct Submission JOURNAL Submitted (15-DEC-1997) Department of Biological Sciences, The University of Alabama, Box 870344, Tuscaloosa, AL 35487-0344, USA STANDARD No information COMMENTS Sequence information (bases 1 to 10775) Corresponding GenBank entry: AF038471 BASE COUNT 563 a 370 c 353 g 360 t 9129 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~ug caaguuggau uaccccugaG C--------- ----caaaca 301 |gcu--agc| uu-------- -|-------- ---------- ---------| -----(---- 361 ---------) -|-------- -------|-- -------(-- ---------- ---------- 421 -------)-- ---------- ---------- ---------- ---------- -----(---- 481 )---|----- --(-----)- ---------- ---------- ---------- -(------)- 541 ---------- ---------- ---- ---------- |------aac 841 uAA(ACCA)U UUU------- ---------- ---------- ---------- --------uu 901 ------(--- --)------- |uac-cugA- -GUAC-G(-G GAGA)CGGAA -aaggu---- 961 -------<-- --ucaaccu- ---------- ---------- ---------- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- --->------ 1201 ---------- ---------- ---------- ---------< ---------- ---------- 1261 ---------- ---------- ---------> (------)-- ---------- ---|-(---) 1321 -------(-- -----)---- ---------- ---------- ---------- --<------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- >--------- ------(--- ---------- 1561 -------)-- ---------- ---------- -(-------) ---------- ---------- 1621 ---------- --AGAGCGAU AGAA-AA--- ---AGUACC( -GCAA-)GG- ---AAG-GC- 1681 ugaaagagaa augaaacaac ccaua----- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- -----uaa-G C-AAAA ACAAAG---- --------<- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------> (--auuaaac 2041 --)------- -----CUU-G UACCUU(UU- GCAUC)AUGA |UUU-AGCCA GCacc--cu- 2101 caagcaaag- ---------- -------(-- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- -)-------- ---------- 2521 ----(----- )-----<--- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- agac->---- --(------) ---------- ---------- -cuuuaguuu 2701 gaa-acCCCG AA-ACCAG-G UG-AGCUACC CCG-AGA-CA GCCU------ ---------- 2761 -(-------- ---------- ---------- --------au guu-auuua) ---------- 2821 -GGGCUAA-C CC-GUCUCU( GUGGCAA-A) AGAG-UGGGG --AGAGCUC- CGGGUAG-AA 2881 GU(G-ACAG) ACU-UACC-G A-ACCUGGUG AUAGCU-GGU UGCCU--GAG AA-GUG-GAU 2941 (-AGAA)GUU CA-GC-CUCA UACA<----- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ------->-- ---|------ 3061 -|------|- ---------- ---------- --------(- --------)< ccccgcauca 3121 ---a-----a acau--acau uau--ca--- ---------- ---------- ---------- 3181 ----agauac ccaagggaaa ua-------- ---------- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---->----- ---------- 3301 ---------- ---------- ----|----- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- -------u-a -uGAG-AGUU AGUUG--AA- AG-GG(-GUA 3481 CAG)CCCUUU UA-AC----- -aAAGG(AUA -CAA)CCU-u uacag-g-ag -ga-UAA--- 3541 --agaucaua auaugua-a- aacaua---- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ------cugu u<-------- ---------- ---------- 3721 ---------- ---------- ---------- ---------- -->UUAGU-G GGC(CUAAAA 3781 GC-A)-GCCA -cCUA|A(G- UA)-|GAAAG C(--GUUAAA )GC|-uCag- acag--<--- 3841 --aaggaagu uuauuauacu gauaaacaa- ---------- ---------- ---------- 3901 ->-------- -------|-- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- ---------- 4021 ---------- ---------- ---------- ---------- ---------- ---------- 4081 -------|uc uuau--ucc| c--c-ua|-- ---------- ---------- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- ---------- ---------- ---------- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- -----auuuu auCAG-AC|- CA-ACCCAUG ---------- 4501 ---------- ---------- (cccg---)< ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ------->-- ---------- ---------| CAUGGAAGAG AUUAUGC-UA 4681 GA|AUGAGUA -ACAA-GAA- ga-------- (-ccugcgcu ---------- ---------- 4741 ---------- -----)---- ---uc-|ucc ----uu-GCA CAA--gugua a|----acca 4801 gauc----gg ---------- ----(--aca aa)c-c|--a cuggaa---- ---------- 4861 ---cuuaa-- -cga------ ---------- -------(-- ---------- ------)<-- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 >--------- ---------- ---------- ----(----- ---------- ---------- 5041 ---------- ---------- ----)----- |-----|--- ---------- |--<------ 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ---------- ---------- 5221 ---------- ---------- ---------- ---------- ---------- ---------- 5281 ---------- ---------- ---------- ---------- ---------- ---------- 5341 ---------- ---------- ---------- ---------- ---------- ---------- 5401 ---------- ---------- ------->-- ---------- ---------- ---------- 5461 -----(---- ------)--- ---|------ --------|- ---------- -(-----)-- 5521 |--------- ---------- ---------- -----(---- )--------- ---------- 5581 --<------- ---------- ---------- ---------- ---------- ---------- 5641 ---------- ---------- ------->-- ---------- ---------- ---<------ 5701 ---------- acccaaccca agagggcaau gugg-auaac a-uaaaccuc aagaagaguu 5761 cacaauuaga ---------- ---------- ---------- ---------- ---------- 5821 ---------- ---------- ---------- ---------- ---------- ---------- 5881 ---------- ---------- ---------- ---------- ---------- ---------- 5941 ---------- ---------- ---------- ---------- ---------- ---------- 6001 ---------- ---------- ---------- ---------- ---------- ---------- 6061 ---------- ---------- ---------- ---------- ---------- ---------- 6121 ---------- ---------- ---------- ---------- ---------- ---------- 6181 ---------- ---------- ---------- ---------- ---------- ---------- 6241 ---------- ---------- ---------- ---------- ---------- ---------- 6301 ---------- ---------- ---------- ---------- ---------- ---------- 6361 ---------- ---------- ---------- ---------- ---------- ---------- 6421 ---------- ---------- ------>--- ---------- ---------- -------|-- 6481 ---------- -(------)- -|-------- ----(----- ------)--- ---------| 6541 |--------- ---------- ---------- ---CGGCAAA ---------- ---------- 6601 ---------- ---------- ---------- ---------- ---------- ---------- 6661 ---------- ---------- ---------- ---------- ---------- ---------- 6721 ---------- ---------- ---------- ---------- ---------- ---------- 6781 ------(--- )--------c acAAGCCU|C GC---CUG-U UU(ACCAA)A AA-CAUC-GC 6841 CUCCUG|C-- ---------- ---------- (aacuaaauu uga---)--- ---------- 6901 ------GUA- UAG-GAGGUC CAGCCU<--- ---------- ---------- ---------- 6961 ---------- ---------- -------->G CC-CA-GU|G AC-------- ---------- 7021 ---------- --(------- ---------- ---------- ---------- ---------- 7081 ---------- ---------- --------ua cgg)------ ---------- ---------| 7141 ---GUUC-AA C-|GG-C|-C -GCGGU-(AU -UUUG)ACCG UG|C(AAA)- GG-UAGCGCA 7201 AUC-AC-U-U |GUCUCU(-U AAAU-)AGAG AC|CU-GUAU GAAUGGCUAG A-CGAGGGCU 7261 UA-------- ---------- -------ACU GUCUCCCCUA UCAA-GU-CA ----GUGAAA 7321 UU|G|AUCUA UC-CG(U-GC AGAAG)CGGG UAU----AAC UAUACAAGAC GAGAAG-ACC 7381 CUUUGG-|-A GCUUA--AGG UA|-ca-aau uua--a---| <--------- ---------- 7441 ---------- ---------- --->------ ---------- ---------- ---------- 7501 ---------- ---------- ---------- --<------- ------ccac guuaa-acaa 7561 cu-ccguaaa aaguaagaac uuaguggcaa a--------- ---------- ---------- 7621 ---------- ---------- ---------> --(------- -)-------- ---------- 7681 ---------- -------|-- ---------- ---------- ---------- ---------- 7741 -----(---- ----)----- ---------- ---------- ---------- --------<- 7801 ---------- ---------- ---------- ---------- ---------- ---------- 7861 ---------- ---------- ---------- ---------- ---------- ---------- 7921 ---------- ---------- ---------- ---------- ---------- ---------- 7981 ---------- ---------- ---------- ---------- ---------- ---------- 8041 ---------- ---------- ---------- ---------- ---------- ---------- 8101 ---------- ---------- ----->---- ----u-aaaa uuu---U-AC CUUCGGUUG( 8161 GGG)CG-AC- C|GCGGAG(- --------GA AAGACAAGC- )CUCC-GA|G |u|gg---|< 8221 ---------- ---------- ---------- ---------- ---------- ---------- 8281 ---------- ---------- ---------- ---------- ---------- ------gcug 8341 ggcaaau--- cccua----- ---------- ---------- ---------- ->-------- 8401 ---------- ---------- ---------- ---------- ---------- ---------- 8461 ---------- ---------- ---------- ---------- ---------- ---------- 8521 ---------- ---------- ---------- ---------- ---------- ---------- 8581 ---------- ---------- ---------- ---------- ---------- ---------- 8641 ---------- ---------- ---------- ---------- ---------- ---------- 8701 ---------- ---------- ---------- ---------- --|------- ---------- 8761 --------aa gccaa-uag( -agacau--- )cuaua-agc -cgcagaaua ucug------ 8821 ---------- ---------- ---------- ---------- ---------- --------ac 8881 c|---aaaaa UGAUC-cgau c--------- ---------- ---(------ ---------- 8941 ---------- ---------- ---------- ---------- -------aca gc)--|--ga 9001 ucgAUCAAC- |GAA-CCAAG UUACCC|UAG G|GAUAACAG |C-GCA-A-U CCCCUCCCAG 9061 AG(U--CCAU )AUCGACGAG --GGGGUUUA CG-ACCUCGA UGUU|GG--A U|C|AGGAC| 9121 AU-CC-UAAU GG-UG(--CA -GC)CGCUAU UAAG-GGU|U CGUU(UGUUC )AACGA-UUA 9181 A--AGUCCU- --ACGUGAUC UGAGUUCAGA CC|GG-A(GU AA)UCCAGGU CAGUUUCUAU 9241 CU|GUA---- --|-|<---- ---------- ---------- ---------- -----acgc- 9301 >--------- ---------- -uA-CUU-UU CC--(UAGU- AC(-GAAA)G GAUU-)GGAA 9361 A--AG-- ggggccc-au gc-------- 9421 -|-------- (-----) 9541 ---------- ---------- gcac-gcccc gcc------- ---------- -------cca 9601 ---------- ---aauuaau (gaaaac--a aauaa)a-uu -aa-guaaag g--------- 9661 ---------- ---------| ------(--- )--------- -------|gu 9961 uc-(aagaua a--)-ggaca ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10021 ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~~~ 10141 ~~~~~~~~~~ ~~~~~~~~~~ ~)~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10201 ~~~~~~~~~~ ~|~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10321 ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ||||| // LOCUS mt.G.atrar 10775 bp RNA RNA 02-JUN-1998 DEFINITION Mitochondrion Gila atraria.; . ACCESSION AF0384 2 KEYWORDS . SOURCE Mitochondrion Gila atraria. ORGANISM Mitochondrion Gila atraria. REFERENCE 1 (bases 1 to 2718) AUTHORS Simons,A.M. and Mayden,R.L. TITLE Phoxinins (Actinopterygii: Cyprinidae) as Inferred from Mitochondrial 12S and 16S Ribosomal RNA Sequences Phylogenetic Relationships of the Western North American JOURNAL Mol. Phylogenet. Evol. (1998) In press STANDARD No information REFERENCE 2 (bases 1 to 2718) AUTHORS Simons,A.M. and Mayden,R.L. TITLE Direct Submission JOURNAL Submitted (15-DEC-1997) Department of Biological Sciences, The University of Alabama, Box 870344, Tuscaloosa, AL 35487-0344, USA STANDARD No information COMMENTS Sequence information (bases 1 to 10775) Corresponding GenBank entry: AF038472 BASE COUNT 595 a 376 c 364 g 375 t 9065 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~ug caaguugggu cg-cccugaG C--------- ----caaaca 301 |gcu--agc| uu-------- -|-------- ---------- ---------| -----(---- 361 ---------) -|-------- -------|-- -------(-- ---------- ---------- 421 -------)-- ---------- ---------- ---------- ---------- -----(---- 481 )---|----- --(-----)- ---------- ---------- ---------- -(------)- 541 ---------- ---------- ---- ---------- |------aac 841 uAA(ACCA)U UUU------- ---------- ---------- ---------- --------uu 901 ------(--- --)------- |uac-cuaA- -GUAC-G(-G GAGA)CGGAA -aaggu---- 961 -------<-- --ucaaccu- ---------- ---------- ---------- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- --->------ 1201 ---------- ---------- ---------- ---------< ---------- ---------- 1261 ---------- ---------- ---------> (------)-- ---------- ---|-(---) 1321 -------(-- -----)---- ---------- ---------- ---------- --<------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- >--------- ------(--- ---------- 1561 -------)-- ---------- ---------- -(-------) ---------- ---------- 1621 ---------- --AAAGCAAU AGAG-AA--- ---AGUACC( -GCAA-)GG- ---AAA-GC- 1681 ugaaagagaa gugaaacaac ccaua----- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- -----uaa-G C-AGAA ACAAAG---- --------<- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------> (--acuaaac 2041 --)------- -----CUU-G UACCUU(UU- GCAUC)AUGA |UUU-AGCCA GCacc--cu- 2101 caagcaaag- ---------- -------(-- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- -)-------- ---------- 2521 ----(----- )-----<--- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- agac->---- --(------) ---------- ---------- -cuuuaguuu 2701 gaa-gcCCCG AA-ACCAG-G UG-AGCUACC CCG-AGA-CA GCCU------ ---------- 2761 -(-------- ---------- ---------- --------au auu-auuua) ---------- 2821 -GGGCUAA-C CC-GUCUCU( GUGGCAA-A) AGAG-UGGGA --AGAGCUC- CGGGUAG-AA 2881 GU(G-ACAG) ACC-UACC-G A-ACCUGGUG AUAGCU-GGU UGUCU--GAG AA-GUG-GAU 2941 (-AGAA)GUU CA-GC-CUCA UGCA<----- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ------->-- ---|------ 3061 -|------|- ---------- ---------- --------(- --------)< ccccaaauca 3121 a--------u augu--aua- uuauu-a--- ---------- ---------- ---------- 3181 ----agauac ugagggaaau a--------- ---------- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---->----- ---------- 3301 ---------- ---------- ----|----- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- -------u-a -uGAG-AGUU AGUUG--AA- AG-GG(-GUA 3481 CAG)CCCUUU UA-AC----- -aAAGG(AUA -CAA)CCU-u uacag-g-ag -aa-UAA--- 3541 --agaucaua auaugua-a- aacaua---- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ------cugu u<-------- ---------- ---------- 3721 ---------- ---------- ---------- ---------- -->UUAGU-G GGC(CUAAAA 3781 GC-A)-GCCA -cCUA|A(A- UA)-|GAAAG C(--GUUAAA )GC|-uCag- acag--<--- 3841 --aaagaagu uuauuauacc gauaaaaaa- ---------- ---------- ---------- 3901 ->-------- -------|-- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- ---------- 4021 ---------- ---------- ---------- ---------- ---------- ---------- 4081 -------|uc uuau--uuc| c--c-ua|-- ---------- ---------- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- ---------- ---------- ---------- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- -----auuau auCAG-AU|- UA-ACCCAUG ---------- 4501 ---------- ---------- (ccaa---)< ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ------->-- ---------- ---------| CAUGGAAGAA AUUAUGC-UA 4681 GA|AUGAGUA -ACAA-GAA- ga-------- (-ccugcgcu ---------- ---------- 4741 ---------- -----)---- ---uc-|ucc ----uu-GCA CAA--gugua a|----acca 4801 gauc----gg ---------- ----(--aca ag)c-c|--a cuggaa---- ---------- 4861 ---cuuaa-- -cga------ ---------- -------(-- ---------- ------)<-- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 >--------- ---------- ---------- ----(----- ---------- ---------- 5041 ---------- ---------- ----)----- |-----|--- ---------- |--<------ 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ---------- ---------- 5221 ---------- ---------- ---------- ---------- ---------- ---------- 5281 ---------- ---------- ---------- ---------- ---------- ---------- 5341 ---------- ---------- ---------- ---------- ---------- ---------- 5401 ---------- ---------- ------->-- ---------- ---------- ---------- 5461 -----(---- ------)--- ---|------ --------|- ---------- -(-----)-- 5521 |--------- ---------- ---------- -----(---- )--------- ---------- 5581 --<------- ---------- ---------- ---------- ---------- ---------- 5641 ---------- ---------- ------->-- ---------- ---------- ---<------ 5701 ---------- acccaaccca agaggguaau gug-aacaac aaaaauauca agaagaauuc 5761 acaauuagac uaa------- ---------- ---------- ---------- ---------- 5821 ---------- ---------- ---------- ---------- ---------- ---------- 5881 ---------- ---------- ---------- ---------- ---------- ---------- 5941 ---------- ---------- ---------- ---------- ---------- ---------- 6001 ---------- ---------- ---------- ---------- ---------- ---------- 6061 ---------- ---------- ---------- ---------- ---------- ---------- 6121 ---------- ---------- ---------- ---------- ---------- ---------- 6181 ---------- ---------- ---------- ---------- ---------- ---------- 6241 ---------- ---------- ---------- ---------- ---------- ---------- 6301 ---------- ---------- ---------- ---------- ---------- ---------- 6361 ---------- ---------- ---------- ---------- ---------- ---------- 6421 ---------- ---------- ------>--- ---------- ---------- --ucgu-|-- 6481 ---UAACCC- -(CACACU)G G|AGUGC--- ----(uauuu uauaag)--- -----ggaa| 6541 |---AGAC-U A--AAGGGUG -GGAA-AGGA ACUCGGCAAA ---------- ---------- 6601 ---------- ---------- ---------- ---------- ---------- ---------- 6661 ---------- ---------- ---------- ---------- ---------- ---------- 6721 ---------- ---------- ---------- ---------- ---------- ---------- 6781 ------(--- )--------c acAAGCCU|C GC---CUG-U UU(ACCAA)A AA-CAUC-GC 6841 CUCCUG|C-- ---------- ---------- (aacuaaauu ga----)--- ---------- 6901 ------GUA- UAG-GAGGUC CAGCCU<--- ---------- ---------- ---------- 6961 ---------- ---------- -------->G CC-CA-GU|G AC-------- ---------- 7021 ---------- --(------- ---------- ---------- ---------- ---------- 7081 ---------- ---------- --------ua cgg)------ ---------- ---------| 7141 ---GUUC-AA C-|GG-C|-C -GCGGU-(AU -UUUG)ACCG UG|C(AAA)- GG-UAGCGCA 7201 AUC-AC-U-U |GUCUCU(-U AAAU-)AGAG AC|CU-GUAU GAAUGGCUAG A-CGAGGGCU 7261 UA-------- ---------- -------ACU GUCUCCCCCA CCAA-GU-CA ----GUGAAA 7321 UU|G|AUCUA UC-CG(U-GC AGAAG)CGGG UAU----GAC CAUACAAGAC GAGAAG-ACC 7381 CUUUGG-|-A GCUUA--AGG UA|-ca-aau uua--u---| <--------- ---------- 7441 ---------- ---------- --->------ ---------- ---------- ---------- 7501 ---------- ---------- ---------- --<------- ------ccac guuaa-acaa 7561 cu-cuauaaa aaguaagaac uuaguggcaa a--------- ---------- ---------- 7621 ---------- ---------- ---------> --(------- -)-------- ---------- 7681 ---------- -------|-- ---------- ---------- ---------- ---------- 7741 -----(---- ----)----- ---------- ---------- ---------- --------<- 7801 ---------- ---------- ---------- ---------- ---------- ---------- 7861 ---------- ---------- ---------- ---------- ---------- ---------- 7921 ---------- ---------- ---------- ---------- ---------- ---------- 7981 ---------- ---------- ---------- ---------- ---------- ---------- 8041 ---------- ---------- ---------- ---------- ---------- ---------- 8101 ---------- ---------- ----->---- ----u-aaaa uuu---U-AC CUUCGGUUG( 8161 GGG)CG-AC- C|GCGGAG(- --------GA AAAACAAGC- )CUCC-GA|G |u|gg---|< 8221 ---------- ---------- ---------- ---------- ---------- ---------- 8281 ---------- ---------- ---------- ---------- ---------- ------acug 8341 gggcaaac-- cccua----- ---------- ---------- ---------- ->-------- 8401 ---------- ---------- ---------- ---------- ---------- ---------- 8461 ---------- ---------- ---------- ---------- ---------- ---------- 8521 ---------- ---------- ---------- ---------- ---------- ---------- 8581 ---------- ---------- ---------- ---------- ---------- ---------- 8641 ---------- ---------- ---------- ---------- ---------- ---------- 8701 ---------- ---------- ---------- ---------- --|------- ---------- 8761 --------aa gccaa-uag( -aaacau--- )cuaua-agc -cgcagaaua ucug------ 8821 ---------- ---------- ---------- ---------- ---------- --------ac 8881 c|---aaaaa UGAUC-cgac u--------- ---------- ---(------ ---------- 8941 ---------- ---------- ---------- ---------- -------cca ga)--|--ag 9001 ucgAUCAAC- |GAA-CCAAG UUACCC|UAG G|GAUAACAG |C-GCA-A-U CCCCUCCCAG 9061 AG(U--CCAU )AUCGACGAG --GGGGUUUA CG-ACCUCGA UGUU|GG--A U|C|AGGAC| 9121 AU-CC-UAAU GG-UG(--CA -GC)CGCUAU UAAG-GGU|U CGUU(UGUUC )AACGA-UUA 9181 A--AGUCCU- --ACGUGAUC UGAGUUCAGA CC|GG-A(GU AA)UCCAGGU CAGUUUCUAU 9241 CU|GUA---- --|-|<---- ---------- ---------- ---------- -----acgc- 9301 >--------- ---------- -uA-CUU-UU CC--(UAGU- AC(-GAAA)G GAUU-)GGAA 9361 A--AG-- ggggccc-au ac-------- 9421 -|-------- (-----) 9541 ---------- ---------- gcac-gcccc gcc------- ---------- -------cca 9601 ---------- ---aauuaau (gaaaac--a aauaa)a-uu -aa-guaaag g--------- 9661 ---------- ---------| ------(--- )--------- -------|gu 9961 uc-(aagaua a--)-ggaca ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10021 ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~~~ 10141 ~~~~~~~~~~ ~~~~~~~~~~ ~)~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10201 ~~~~~~~~~~ ~|~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10321 ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ||||| // LOCUS mt.G.coe.2 10775 bp RNA RNA 02-JUN-1998 DEFINITION Mitochondrion Gila coerulea.; . ACCESSION AF0384 4 KEYWORDS . SOURCE Mitochondrion Gila coerulea. ORGANISM Mitochondrion Gila coerulea. REFERENCE 1 (bases 1 to 2716) AUTHORS Simons,A.M. and Mayden,R.L. TITLE Phoxinins (Actinopterygii: Cyprinidae) as Inferred from Mitochondrial 12S and 16S Ribosomal RNA Sequences Phylogenetic Relationships of the Western North American JOURNAL Mol. Phylogenet. Evol. (1998) In press STANDARD No information REFERENCE 2 (bases 1 to 2716) AUTHORS Simons,A.M. and Mayden,R.L. TITLE Direct Submission JOURNAL Submitted (15-DEC-1997) Department of Biological Sciences, The University of Alabama, Box 870344, Tuscaloosa, AL 35487-0344, USA STANDARD No information COMMENTS Sequence information (bases 1 to 10775) Corresponding GenBank entry: AF038474 BASE COUNT 592 a 380 c 362 g 374 t 9067 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~ug caaguugggu cg-cccugaG C--------- ----caaaca 301 |gcu--agc| uu-------- -|-------- ---------- ---------| -----(---- 361 ---------) -|-------- -------|-- -------(-- ---------- ---------- 421 -------)-- ---------- ---------- ---------- ---------- -----(---- 481 )---|----- --(-----)- ---------- ---------- ---------- -(------)- 541 ---------- ---------- ---- ---------- |------aac 841 uAA(ACCA)U UUU------- ---------- ---------- ---------- --------uu 901 ------(--- --)------- |uac-cugA- -GUAC-G(-G GAGA)CGGAA -aaggu---- 961 -------<-- --ucgaccu- ---------- ---------- ---------- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- --->------ 1201 ---------- ---------- ---------- ---------< ---------- ---------- 1261 ---------- ---------- ---------> (------)-- ---------- ---|-(---) 1321 -------(-- -----)---- ---------- ---------- ---------- --<------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- >--------- ------(--- ---------- 1561 -------)-- ---------- ---------- -(-------) ---------- ---------- 1621 ---------- --AAAGCAAU AGAG-AA--- ---AGUACC( -GCAA-)GG- ---AAA-GC- 1681 ugaaagagaa augaaacaac ccaua----- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- -----uaa-G C-AGAA ACAAAG---- --------<- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------> (--acuaaac 2041 --)------- -----CUU-G UACCUU(UU- GCAUC)AUGA |UUU-AGCCA GCacc--cu- 2101 caagcaaag- ---------- -------(-- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- -)-------- ---------- 2521 ----(----- )-----<--- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- agac->---- --(------) ---------- ---------- -cuuuaguuu 2701 gaa-acCCCG AA-ACCAG-G UG-AGCUACC CCG-AGA-CA GCCU------ ---------- 2761 -(-------- ---------- ---------- --------au auu-auuua) ---------- 2821 -GGGCUAA-C CC-GUCUCU( GUGGCAA-A) AGAG-UGGGA --AGAGCUC- CGGGUAG-AA 2881 GU(G-ACAG) ACC-UACC-G A-ACCUGGUG AUAGCU-GGU UGUCU--GAG AA-GUG-GAU 2941 (-AGAA)GUU CA-GC-CUCA UACG<----- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ------->-- ---|------ 3061 -|------|- ---------- ---------- --------(- --------)< ccccaaauca 3121 a--------- -cauguaua- uuauu-a--- ---------- ---------- ---------- 3181 ----agauac uaagggagau a--------- ---------- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---->----- ---------- 3301 ---------- ---------- ----|----- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- -------u-a -uGAG-AGUU AGUUG--AA- AG-GG(-GUA 3481 CAG)CCCUUU UA-AC----- -aAAGG(AUA -CAA)CCU-u uacag-g-ag -ga-UAA--- 3541 --agaucaua auauaua-a- aacaua---- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ------cugu u<-------- ---------- ---------- 3721 ---------- ---------- ---------- ---------- -->UUAGU-G GGC(CUAAAA 3781 GC-A)-GCCA -cCUA|A(A- UA)-|GAAAG C(--GUUAAA )GC|-uCag- acag--<--- 3841 --aaagaagu uuauuauacc gauaaaaaa- ---------- ---------- ---------- 3901 ->-------- -------|-- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- ---------- 4021 ---------- ---------- ---------- ---------- ---------- ---------- 4081 -------|uc uuau--ucc| c--c-ua|-- ---------- ---------- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- ---------- ---------- ---------- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- -----auuau auCAG-AU|- CA-ACCCAUG ---------- 4501 ---------- ---------- (cccc---)< ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ------->-- ---------- ---------| CAUGG-AGAG AUUAUGC-UA 4681 GA|AUGAGUA -ACAA-GAA- ga-------- (-ccugcacu ---------- ---------- 4741 ---------- -----)---- ---uc-|ucc ----uu-GCA CAA--gugua a|----acca 4801 gauc----gg ---------- ----(--aca aa)c-c|--a cuggaa---- ---------- 4861 ---cuuaa-- -cga------ ---------- -------(-- ---------- ------)<-- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 >--------- ---------- ---------- ----(----- ---------- ---------- 5041 ---------- ---------- ----)----- |-----|--- ---------- |--<------ 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ---------- ---------- 5221 ---------- ---------- ---------- ---------- ---------- ---------- 5281 ---------- ---------- ---------- ---------- ---------- ---------- 5341 ---------- ---------- ---------- ---------- ---------- ---------- 5401 ---------- ---------- ------->-- ---------- ---------- ---------- 5461 -----(---- ------)--- ---|------ --------|- ---------- -(-----)-- 5521 |--------- ---------- ---------- -----(---- )--------- ---------- 5581 --<------- ---------- ---------- ---------- ---------- ---------- 5641 ---------- ---------- ------->-- ---------- ---------- ---<------ 5701 ---------- acccaaccca agaggguaau gug-aacaac aaaaauauca agaagaauuc 5761 acaauuaaac uaa------- ---------- ---------- ---------- ---------- 5821 ---------- ---------- ---------- ---------- ---------- ---------- 5881 ---------- ---------- ---------- ---------- ---------- ---------- 5941 ---------- ---------- ---------- ---------- ---------- ---------- 6001 ---------- ---------- ---------- ---------- ---------- ---------- 6061 ---------- ---------- ---------- ---------- ---------- ---------- 6121 ---------- ---------- ---------- ---------- ---------- ---------- 6181 ---------- ---------- ---------- ---------- ---------- ---------- 6241 ---------- ---------- ---------- ---------- ---------- ---------- 6301 ---------- ---------- ---------- ---------- ---------- ---------- 6361 ---------- ---------- ---------- ---------- ---------- ---------- 6421 ---------- ---------- ------>--- ---------- ---------- --ucgu-|-- 6481 ---UAACCC- -(CACACU)G G|AGUGC--- ----(cauuu uauaa-)--- -----ggaa| 6541 |---AGAC-U A--AAAGGUG -GGAA-AGGA ACUCGGCAAA ---------- ---------- 6601 ---------- ---------- ---------- ---------- ---------- ---------- 6661 ---------- ---------- ---------- ---------- ---------- ---------- 6721 ---------- ---------- ---------- ---------- ---------- ---------- 6781 ------(--- )--------c acAAGCCU|C GC---CUG-U UU(ACCAA)A AA-CAUC-GC 6841 CUCCUG|C-- ---------- ---------- (aacugaauu ga----)--- ---------- 6901 ------GUA- UAG-GAGGUC CAGCCU<--- ---------- ---------- ---------- 6961 ---------- ---------- -------->G CC-CA-GU|G AC-------- ---------- 7021 ---------- --(------- ---------- ---------- ---------- ---------- 7081 ---------- ---------- --------ua cgg)------ ---------- ---------| 7141 ---GUUC-AA C-|GG-C|-C -GCGGU-(AU -UUUG)ACCG UG|C(AAA)- GG-UAGCGCA 7201 AUC-AC-U-U |GUCUCU(-U AAAU-)AGAG AC|CU-GUAU GAAUGGCUAG A-CGAGGGCU 7261 UA-------- ---------- -------ACU GUCUCCCCCA CCAA-GU-CA ----GUGAAA 7321 UU|G|AUCUA UC-CG(U-GC AGAAG)CGGG UAU----GAC UAUACAAGAC GAGAAG-ACC 7381 CUUUGG-|-A GCUUA--AGG UA|-ca-aau uua--c---| <--------- ---------- 7441 ---------- ---------- --->------ ---------- ---------- ---------- 7501 ---------- ---------- ---------- --<------- ------ccac guuaa-acaa 7561 cu-ccauaaa aacuaagaac uuaguggcaa a--------- ---------- ---------- 7621 ---------- ---------- ---------> --(------- -)-------- ---------- 7681 ---------- -------|-- ---------- ---------- ---------- ---------- 7741 -----(---- ----)----- ---------- ---------- ---------- --------<- 7801 ---------- ---------- ---------- ---------- ---------- ---------- 7861 ---------- ---------- ---------- ---------- ---------- ---------- 7921 ---------- ---------- ---------- ---------- ---------- ---------- 7981 ---------- ---------- ---------- ---------- ---------- ---------- 8041 ---------- ---------- ---------- ---------- ---------- ---------- 8101 ---------- ---------- ----->---- ----u-aaaa uuu---U-AC CUUCGGUUG( 8161 GGG)CG-AC- C|GCGGAG(- --------GA AAAACGAGC- )CUCC-GA|G |u|gg---|< 8221 ---------- ---------- ---------- ---------- ---------- ---------- 8281 ---------- ---------- ---------- ---------- ---------- ------acug 8341 gggcaaac-- cccua----- ---------- ---------- ---------- ->-------- 8401 ---------- ---------- ---------- ---------- ---------- ---------- 8461 ---------- ---------- ---------- ---------- ---------- ---------- 8521 ---------- ---------- ---------- ---------- ---------- ---------- 8581 ---------- ---------- ---------- ---------- ---------- ---------- 8641 ---------- ---------- ---------- ---------- ---------- ---------- 8701 ---------- ---------- ---------- ---------- --|------- ---------- 8761 --------aa gcuaa-uag( -aaacau--- )cuaua-agc -cgcagaaua ucug------ 8821 ---------- ---------- ---------- ---------- ---------- --------ac 8881 c|---aaaaa UGAUC-cgac c--------- ---------- ---(------ ---------- 8941 ---------- ---------- ---------- ---------- -------cca ga)--|--gg 9001 ucgAUCAAC- |GAA-CCAAG UUACCC|UAG G|GAUAACAG |C-GCA-A-U CCCCUCCCAG 9061 AG(U--CCAU )AUCGACGAG --GGGGUUUA CG-ACCUCGA UGUU|GG--A U|C|AGGAC| 9121 AU-CC-UAAU GG-UG(--CA -GC)CGCUAU UAAG-GGU|U CGUU(UGUUC )AACGA-UUA 9181 A--AGUCCU- --ACGUGAUC UGAGUUCAGA CC|GG-A(GU AA)UCCAGGU CAGUUUCUAU 9241 CU|GUA---- --|-|<---- ---------- ---------- ---------- -----acgc- 9301 >--------- ---------- -uA-CUU-UU CC--(UAGU- AC(-GAAA)G GAUU-)GGAA 9361 A--AG-- ggggccu-au ac-------- 9421 -|-------- (-----) 9541 ---------- ---------- gcac-gcccc gcc------- ---------- -------cca 9601 ---------- ---aauuaau (gaaaac--a aauaa)a-uu -aa-guaaag g--------- 9661 ---------- ---------| ------(--- )--------- -------|gu 9961 uc-(aagaua a--)-ggaca ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10021 ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~~~ 10141 ~~~~~~~~~~ ~~~~~~~~~~ ~)~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10201 ~~~~~~~~~~ ~|~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10321 ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ||||| // LOCUS mt.G.coe.1 10775 bp RNA RNA 02-JUN-1998 DEFINITION Mitochondrion Gila coerulea.; . ACCESSION AF0384 3 KEYWORDS . SOURCE Mitochondrion Gila coerulea. ORGANISM Mitochondrion Gila coerulea. REFERENCE 1 (bases 1 to 2716) AUTHORS Simons,A.M. and Mayden,R.L. TITLE Phylogenetic Relationships of the Western North American Phoxinins (Actinopterygii: Cyprinidae) as Inferred from Mitochondrial 12S and 16S Ribosomal RNA Sequences JOURNAL Mol. Phylogenet. Evol. (1998) In press STANDARD No information REFERENCE 2 (bases 1 to 2716) AUTHORS Simons,A.M. and Mayden,R.L. TITLE Direct Submission JOURNAL Submitted (15-DEC-1997) Department of Biological Sciences, The University of Alabama, Box 870344, Tuscaloosa, AL 35487-0344, USA STANDARD No information COMMENTS Sequence information (bases 1 to 10775) Corresponding GenBank entry: AF038473 BASE COUNT 591 a 378 c 364 g 375 t 9067 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~ug caaguugggu cg-cccugaG C--------- ----caaaca 301 |gcu--agc| uu-------- -|-------- ---------- ---------| -----(---- 361 ---------) -|-------- -------|-- -------(-- ---------- ---------- 421 -------)-- ---------- ---------- ---------- ---------- -----(---- 481 )---|----- --(-----)- ---------- ---------- ---------- -(------)- 541 ---------- ---------- ---- ---------- |------aau 841 uAA(ACCA)U UUU------- ---------- ---------- ---------- --------uu 901 ------(--- --)------- |uac-cugA- -GUAC-G(-G GAGA)CGGAA -aaggu---- 961 -------<-- --ucgaccu- ---------- ---------- ---------- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- --->------ 1201 ---------- ---------- ---------- ---------< ---------- ---------- 1261 ---------- ---------- ---------> (------)-- ---------- ---|-(---) 1321 -------(-- -----)---- ---------- ---------- ---------- --<------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- >--------- ------(--- ---------- 1561 -------)-- ---------- ---------- -(-------) ---------- ---------- 1621 ---------- --AAAGCAAU AGAG-AA--- ---AGUACC( -GCAA-)GG- ---AAA-GC- 1681 ugaaagagaa augaaacaac ccaua----- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- -----uaa-G C-AGAA ACAAAG---- --------<- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------> (--acuaaac 2041 --)------- -----CUU-G UACCUU(UU- GCAUC)AUGA |UUU-AGCCA GCacc--cu- 2101 caagcaaag- ---------- -------(-- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- -)-------- ---------- 2521 ----(----- )-----<--- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- agac->---- --(------) ---------- ---------- -cuuuaguuu 2701 gaa-acCCCG AA-ACCAG-G UG-AGCUACC CCG-AGA-CA GCCU------ ---------- 2761 -(-------- ---------- ---------- --------au auu-auuua) ---------- 2821 -GGGCUAA-C CC-GUCUCU( GUGGCAA-A) AGAG-UGGGA --AGAGCUC- CGGGUAG-AA 2881 GU(G-ACAG) ACC-UACC-G A-ACCUGGUG AUAGCU-GGU UGUCU--GAG AA-GUG-GAU 2941 (-AGAA)GUU CA-GC-CUCA UACG<----- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ------->-- ---|------ 3061 -|------|- ---------- ---------- --------(- --------)< ccccaaauca 3121 a--------- -cauguaua- uuauu-a--- ---------- ---------- ---------- 3181 ----agauac uaagggagau a--------- ---------- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---->----- ---------- 3301 ---------- ---------- ----|----- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- -------u-a -uGAG-AGUU AGUUG--AA- AG-GG(-GUA 3481 CAG)CCCUUU UA-AC----- -aAAGG(AUA -CAA)CCU-u uacag-g-ag -ga-UAA--- 3541 --agaucaua auauaua-a- aacaua---- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ------cugu u<-------- ---------- ---------- 3721 ---------- ---------- ---------- ---------- -->UUAGU-G GGC(CUAAAA 3781 GC-A)-GCCA -cCUA|A(A- UA)-|GAAAG C(--GUUAAA )GC|-uCag- acag--<--- 3841 --aaagaagu uuauuauacc gauaaaaaa- ---------- ---------- ---------- 3901 ->-------- -------|-- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- ---------- 4021 ---------- ---------- ---------- ---------- ---------- ---------- 4081 -------|uc uuau--ucc| c--c-ua|-- ---------- ---------- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- ---------- ---------- ---------- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- -----auuau auCAG-AU|- CA-ACCCAUG ---------- 4501 ---------- ---------- (cccc---)< ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ------->-- ---------- ---------| CAUGG-AGAG AUUAUGC-UA 4681 GA|AUGAGUA -ACAA-GAA- ga-------- (-ccugcacu ---------- ---------- 4741 ---------- -----)---- ---uc-|ucc ----uu-GCA CAA--gugua a|----acca 4801 gauc----gg ---------- ----(--aca aa)c-c|--a cuggaa---- ---------- 4861 ---cuuaa-- -cga------ ---------- -------(-- ---------- ------)<-- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 >--------- ---------- ---------- ----(----- ---------- ---------- 5041 ---------- ---------- ----)----- |-----|--- ---------- |--<------ 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ---------- ---------- 5221 ---------- ---------- ---------- ---------- ---------- ---------- 5281 ---------- ---------- ---------- ---------- ---------- ---------- 5341 ---------- ---------- ---------- ---------- ---------- ---------- 5401 ---------- ---------- ------->-- ---------- ---------- ---------- 5461 -----(---- ------)--- ---|------ --------|- ---------- -(-----)-- 5521 |--------- ---------- ---------- -----(---- )--------- ---------- 5581 --<------- ---------- ---------- ---------- ---------- ---------- 5641 ---------- ---------- ------->-- ---------- ---------- ---<------ 5701 ---------- acccaaccca agaggguaau gug-aacaac aaaaauauca agaagaauuc 5761 acaauuaaac uaa------- ---------- ---------- ---------- ---------- 5821 ---------- ---------- ---------- ---------- ---------- ---------- 5881 ---------- ---------- ---------- ---------- ---------- ---------- 5941 ---------- ---------- ---------- ---------- ---------- ---------- 6001 ---------- ---------- ---------- ---------- ---------- ---------- 6061 ---------- ---------- ---------- ---------- ---------- ---------- 6121 ---------- ---------- ---------- ---------- ---------- ---------- 6181 ---------- ---------- ---------- ---------- ---------- ---------- 6241 ---------- ---------- ---------- ---------- ---------- ---------- 6301 ---------- ---------- ---------- ---------- ---------- ---------- 6361 ---------- ---------- ---------- ---------- ---------- ---------- 6421 ---------- ---------- ------>--- ---------- ---------- --ucgu-|-- 6481 ---UAACCC- -(CACACU)G G|AGUGC--- ----(cauuu uauaa-)--- -----ggaa| 6541 |---AGAC-U A--AAAGGUG -GGAA-AGGA ACUCGGCAAA ---------- ---------- 6601 ---------- ---------- ---------- ---------- ---------- ---------- 6661 ---------- ---------- ---------- ---------- ---------- ---------- 6721 ---------- ---------- ---------- ---------- ---------- ---------- 6781 ------(--- )--------c acAAGCCU|C GC---CUG-U UU(ACCAA)A AA-CAUC-GC 6841 CUCCUG|C-- ---------- ---------- (aacugaauu ga----)--- ---------- 6901 ------GUA- UAG-GAGGUC CAGCCU<--- ---------- ---------- ---------- 6961 ---------- ---------- -------->G CC-CA-GU|G AC-------- ---------- 7021 ---------- --(------- ---------- ---------- ---------- ---------- 7081 ---------- ---------- --------ua cgg)------ ---------- ---------| 7141 ---GUUC-AA C-|GG-C|-C -GCGGU-(AU -UUUG)ACCG UG|C(AAA)- GG-UAGCGCA 7201 AUC-AC-U-U |GUCUCU(-U AAAU-)AGAG AC|CU-GUAU GAAUGGCUAG A-CGAGGGCU 7261 UA-------- ---------- -------ACU GUCUCCCCCA CCAA-GU-CA ----GUGAAA 7321 UU|G|AUCUA UC-CG(U-GC AGAAG)CGGG UGU----GAC UAUACAAGAC GAGAAG-ACC 7381 CUUUGG-|-A GCUUA--AGG UA|-ca-aau uua--c---| <--------- ---------- 7441 ---------- ---------- --->------ ---------- ---------- ---------- 7501 ---------- ---------- ---------- --<------- ------ccac guuaa-acaa 7561 cu-ccauaaa aaguaagaac uuaguggcaa a--------- ---------- ---------- 7621 ---------- ---------- ---------> --(------- -)-------- ---------- 7681 ---------- -------|-- ---------- ---------- ---------- ---------- 7741 -----(---- ----)----- ---------- ---------- ---------- --------<- 7801 ---------- ---------- ---------- ---------- ---------- ---------- 7861 ---------- ---------- ---------- ---------- ---------- ---------- 7921 ---------- ---------- ---------- ---------- ---------- ---------- 7981 ---------- ---------- ---------- ---------- ---------- ---------- 8041 ---------- ---------- ---------- ---------- ---------- ---------- 8101 ---------- ---------- ----->---- ----u-aaaa uuu---U-AC CUUCGGUUG( 8161 GGG)CG-AC- C|GCGGAG(- --------GA AAAACGAGC- )CUCC-GA|G |u|gg---|< 8221 ---------- ---------- ---------- ---------- ---------- ---------- 8281 ---------- ---------- ---------- ---------- ---------- ------acug 8341 gggcaaac-- cccua----- ---------- ---------- ---------- ->-------- 8401 ---------- ---------- ---------- ---------- ---------- ---------- 8461 ---------- ---------- ---------- ---------- ---------- ---------- 8521 ---------- ---------- ---------- ---------- ---------- ---------- 8581 ---------- ---------- ---------- ---------- ---------- ---------- 8641 ---------- ---------- ---------- ---------- ---------- ---------- 8701 ---------- ---------- ---------- ---------- --|------- ---------- 8761 --------aa gcuaa-uag( -aaacau--- )cuaua-agc -cgcagaaua ucug------ 8821 ---------- ---------- ---------- ---------- ---------- --------ac 8881 c|---aaaaa UGAUC-cgac c--------- ---------- ---(------ ---------- 8941 ---------- ---------- ---------- ---------- -------cca ga)--|--gg 9001 ucgAUCAAC- |GAA-CCAAG UUACCC|UAG G|GAUAACAG |C-GCA-A-U CCCCUCCCAG 9061 AG(U--CCAU )AUCGACGAG --GGGGUUUA CG-ACCUCGA UGUU|GG--A U|C|AGGAC| 9121 AU-CC-UAAU GG-UG(--CA -GC)CGCUAU UAAG-GGU|U CGUU(UGUUC )AACGA-UUA 9181 A--AGUCCU- --ACGUGAUC UGAGUUCAGA CC|GG-A(GU AA)UCCAGGU CAGUUUCUAU 9241 CU|GUA---- --|-|<---- ---------- ---------- ---------- -----acgc- 9301 >--------- ---------- -uA-CUU-UU CC--(UAGU- AC(-GAAA)G GAUU-)GGAA 9361 A--AG-- ggggccu-au ac-------- 9421 -|-------- (-----) 9541 ---------- ---------- gcac-gcccc gcc------- ---------- -------cca 9601 ---------- ---aauuaau (gaaaac--a aauaa)a-uu -aa-guaaag g--------- 9661 ---------- ---------| ------(--- )--------- -------|gu 9961 uc-(aagaua a--)-ggaca ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10021 ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~~~ 10141 ~~~~~~~~~~ ~~~~~~~~~~ ~)~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10201 ~~~~~~~~~~ ~|~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10321 ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ||||| // LOCUS mt.G.consp 10775 bp RNA RNA 02-JUN-1998 DEFINITION Mitochondrion Gila conspersa.; . ACCESSION AF0384 5 KEYWORDS . SOURCE Mitochondrion Gila conspersa. ORGANISM Mitochondrion Gila conspersa. REFERENCE 1 (bases 1 to 2718) AUTHORS Simons,A.M. and Mayden,R.L. TITLE Phoxinins (Actinopterygii: Cyprinidae) as Inferred from Mitochondrial 12S and 16S Ribosomal RNA Sequences Phylogenetic Relationships of the Western North American JOURNAL Mol. Phylogenet. Evol. (1998) In press STANDARD No information REFERENCE 2 (bases 1 to 2718) AUTHORS Simons,A.M. and Mayden,R.L. TITLE Direct Submission JOURNAL Submitted (15-DEC-1997) Department of Biological Sciences, The University of Alabama, Box 870344, Tuscaloosa, AL 35487-0344, USA STANDARD No information COMMENTS Sequence information (bases 1 to 10775) Corresponding GenBank entry: AF038475 BASE COUNT 599 a 383 c 358 g 370 t 9065 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~ug caaauugggu cg-cccugaG C--------- ----caaaca 301 |gcu--agc| uu-------- -|-------- ---------- ---------| -----(---- 361 ---------) -|-------- -------|-- -------(-- ---------- ---------- 421 -------)-- ---------- ---------- ---------- ---------- -----(---- 481 )---|----- --(-----)- ---------- ---------- ---------- -(------)- 541 ---------- ---------- ---- ---------- |------aac 841 uAA(ACCA)U UUU------- ---------- ---------- ---------- --------uu 901 ------(--- --)------- |uac-cuaA- -GUAC-G(-G GAGA)CGGAA -aaggu---- 961 -------<-- --ccaaccu- ---------- ---------- ---------- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- --->------ 1201 ---------- ---------- ---------- ---------< ---------- ---------- 1261 ---------- ---------- ---------> (------)-- ---------- ---|-(---) 1321 -------(-- -----)---- ---------- ---------- ---------- --<------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- >--------- ------(--- ---------- 1561 -------)-- ---------- ---------- -(-------) ---------- ---------- 1621 ---------- --AAAGCAAU AGAG-AA--- ---AGUACC( -GCAA-)GG- ---AAA-GC- 1681 ugaaagagaa augaaacaac ccaua----- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- -----uaa-G C-AGAA ACAAAG---- --------<- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------> (--acuaaac 2041 --)------- -----CUU-G UACCUU(UU- GCAUC)AUGA |UUU-AGCCA GCacc--cu- 2101 caagcaaag- ---------- -------(-- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- -)-------- ---------- 2521 ----(----- )-----<--- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- agac->---- --(------) ---------- ---------- -cuuuaguuu 2701 gaa-acCCCG AA-ACCGG-G UG-AGCUACC CCG-AGA-CA GCCU------ ---------- 2761 -(-------- ---------- ---------- --------au auu-auuua) ---------- 2821 -GGGCUAA-C CC-GUCUCU( GUGGCAA-A) AGAG-UGGGA --AGAGCUC- CGGGUAG-AA 2881 GU(G-ACAG) ACC-UACC-G A-ACCUGGUG AUAGCU-GGU UAUCU--GAG AA-AUG-GAU 2941 (-AGAA)GUU CA-GC-CUCA UACA<----- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ------->-- ---|------ 3061 -|------|- ---------- ---------- --------(- --------)< ccccaaauca 3121 a--------- -cauguaua- uuauu-a--- ---------- ---------- ---------- 3181 ----agauau caagggaaau a--------- ---------- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---->----- ---------- 3301 ---------- ---------- ----|----- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- -------u-a -uGAG-CGUU AGUUG--AA- AG-GG(-GUA 3481 CAG)CCCUUU UA-AC----- -aAAGG(AUA -CAA)CCU-u uacag-g-ag -aa-UAA--- 3541 --agaucaua auaugua-a- aacaua---- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ------cugu u<-------- ---------- ---------- 3721 ---------- ---------- ---------- ---------- -->UUAGU-G GGC(CUAAAA 3781 GC-A)-GCCA -cCUA|A(A- UA)-|GAAAG C(--GUUAAA )GC|-uCag- acag--<--- 3841 --aaagaggu uuauuauacc gauaaaaaa- ---------- ---------- ---------- 3901 ->-------- -------|-- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- ---------- 4021 ---------- ---------- ---------- ---------- ---------- ---------- 4081 -------|uc uuau--uuc| c--c-ua|-- ---------- ---------- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- ---------- ---------- ---------- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- -----auuau auCAG-AU|- CA-ACCCAUG ---------- 4501 ---------- ---------- (ccaa---)< ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ------->-- ---------- ---------| CAUGGAAGAG AUUAUGC-UA 4681 GA|AUGAGUA -ACAA-GAA- ga-------- (-ccugcgcu ---------- ---------- 4741 ---------- -----)---- ---uc-|ucc ----uu-GCA CAA--gugua a|----acca 4801 gauc----gg ---------- ----(--aca ag)c-c|--a cuggaa---- ---------- 4861 ---cuuaa-- -cga------ ---------- -------(-- ---------- ------)<-- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 >--------- ---------- ---------- ----(----- ---------- ---------- 5041 ---------- ---------- ----)----- |-----|--- ---------- |--<------ 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ---------- ---------- 5221 ---------- ---------- ---------- ---------- ---------- ---------- 5281 ---------- ---------- ---------- ---------- ---------- ---------- 5341 ---------- ---------- ---------- ---------- ---------- ---------- 5401 ---------- ---------- ------->-- ---------- ---------- ---------- 5461 -----(---- ------)--- ---|------ --------|- ---------- -(-----)-- 5521 |--------- ---------- ---------- -----(---- )--------- ---------- 5581 --<------- ---------- ---------- ---------- ---------- ---------- 5641 ---------- ---------- ------->-- ---------- ---------- ---<------ 5701 ---------- acccaaccca agaggguaau gug-agcaac aaaaauauca agaagaacuc 5761 acaauuaaac caa------- ---------- ---------- ---------- ---------- 5821 ---------- ---------- ---------- ---------- ---------- ---------- 5881 ---------- ---------- ---------- ---------- ---------- ---------- 5941 ---------- ---------- ---------- ---------- ---------- ---------- 6001 ---------- ---------- ---------- ---------- ---------- ---------- 6061 ---------- ---------- ---------- ---------- ---------- ---------- 6121 ---------- ---------- ---------- ---------- ---------- ---------- 6181 ---------- ---------- ---------- ---------- ---------- ---------- 6241 ---------- ---------- ---------- ---------- ---------- ---------- 6301 ---------- ---------- ---------- ---------- ---------- ---------- 6361 ---------- ---------- ---------- ---------- ---------- ---------- 6421 ---------- ---------- ------>--- ---------- ---------- --ucgu-|-- 6481 ---UAACCC- -(CACACU)G G|AGUGC--- ----(uauuu uauaaa)--- -----ggaa| 6541 |---AGAC-U A--AAAGGUG -GGAA-AGGA ACUCGGCAAA ---------- ---------- 6601 ---------- ---------- ---------- ---------- ---------- ---------- 6661 ---------- ---------- ---------- ---------- ---------- ---------- 6721 ---------- ---------- ---------- ---------- ---------- ---------- 6781 ------(--- )--------c acAAGCCU|C GC---CUG-U UU(ACCAA)A AA-CAUC-GC 6841 CUCCUG|C-- ---------- ---------- (aacuaaauc ga----)--- ---------- 6901 ------GUA- UAG-GAGGUC CAGCCU<--- ---------- ---------- ---------- 6961 ---------- ---------- -------->G CC-CA-GU|G AC-------- ---------- 7021 ---------- --(------- ---------- ---------- ---------- ---------- 7081 ---------- ---------- --------ua cgg)------ ---------- ---------| 7141 ---GUUC-AA C-|GG-C|-C -GCGGU-(AU -UUUG)ACCG UG|C(AAA)- GG-UAGCGCA 7201 AUC-AC-U-U |GUCUCU(-U AAAU-)AGAG AC|CU-GUAU GAAUGGCUAG A-CGAGGGCU 7261 UA-------- ---------- -------ACU GUCUCCCCCA CCAA-GU-CA ----GUGAAA 7321 UU|G|AUCUA UC-CG(U-GC AGAAG)CGGG UAU----GAC UAUACAAGAC GAGAAG-ACC 7381 CUUUGG-|-A GCUUA--AGG UA|-ca-aau uua--u---| <--------- ---------- 7441 ---------- ---------- --->------ ---------- ---------- ---------- 7501 ---------- ---------- ---------- --<------- ------ccac guuaa-acaa 7561 cu-ucauaaa aaguaagaac uuaguggcaa a--------- ---------- ---------- 7621 ---------- ---------- ---------> --(------- -)-------- ---------- 7681 ---------- -------|-- ---------- ---------- ---------- ---------- 7741 -----(---- ----)----- ---------- ---------- ---------- --------<- 7801 ---------- ---------- ---------- ---------- ---------- ---------- 7861 ---------- ---------- ---------- ---------- ---------- ---------- 7921 ---------- ---------- ---------- ---------- ---------- ---------- 7981 ---------- ---------- ---------- ---------- ---------- ---------- 8041 ---------- ---------- ---------- ---------- ---------- ---------- 8101 ---------- ---------- ----->---- ----u-aaac uuu---U-AC CUUCGGUUG( 8161 GGG)CG-AC- C|ACGGAA(- --------GA AAAACAAGC- )CUCC-GA|G |u|gg---|< 8221 ---------- ---------- ---------- ---------- ---------- ---------- 8281 ---------- ---------- ---------- ---------- ---------- ------acug 8341 gggcgaac-- cccua----- ---------- ---------- ---------- ->-------- 8401 ---------- ---------- ---------- ---------- ---------- ---------- 8461 ---------- ---------- ---------- ---------- ---------- ---------- 8521 ---------- ---------- ---------- ---------- ---------- ---------- 8581 ---------- ---------- ---------- ---------- ---------- ---------- 8641 ---------- ---------- ---------- ---------- ---------- ---------- 8701 ---------- ---------- ---------- ---------- --|------- ---------- 8761 --------aa gccaa-uag( -aaacau--- )cuaua-agc -cgcagaaua ucug------ 8821 ---------- ---------- ---------- ---------- ---------- --------ac 8881 c|---aaaaa UGAUC-cgac c--------- ---------- ---(------ ---------- 8941 ---------- ---------- ---------- ---------- -------cca ga)--|--ag 9001 ucgAUCAAC- |GGA-CCAAG UUACCC|UAG G|GAUAACAG |C-GCA-A-U CCCCUCCCAG 9061 AG(U--CCAU )AUCGACGAG --GGGGUUUA CG-ACCUCGA UGUU|GG--A U|C|AGGAC| 9121 AU-CC-UAAU GG-UG(--CA -GC)CGCUAU UAAG-GGU|U CGUU(UGUUC )AACGA-UUA 9181 A--AGUCCU- --ACGUGAUC UGAGUUCAGA CC|GG-A(GU AA)UCCAGGU CAGUUUCUAU 9241 CU|GUA---- --|-|<---- ---------- ---------- ---------- -----acgc- 9301 >--------- ---------- -uA-CUU-UU CC--(UAGU- AC(-GAAA)G GAUU-)GGAA 9361 A--AG-- ggggccc-au gc-------- 9421 -|-------- (-----) 9541 ---------- ---------- gcac-gcccc gcc------- ---------- -------cca 9601 ---------- ---aauuaau (gaaaac--a aauaa)a-uu -aa-guaaag g--------- 9661 ---------- ---------| ------(--- )--------- -------|gu 9961 uc-(aagaua a--)-ggaca ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10021 ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~~~ 10141 ~~~~~~~~~~ ~~~~~~~~~~ ~)~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10201 ~~~~~~~~~~ ~|~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10321 ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ||||| // LOCUS mt.G.cypha 10775 bp RNA RNA 02-JUN-1998 DEFINITION Mitochondrion Gila cypha.; . ACCESSION AF0384 7 KEYWORDS . SOURCE Mitochondrion Gila cypha. ORGANISM Mitochondrion Gila cypha. REFERENCE 1 (bases 1 to 1763) AUTHORS Simons,A.M. and Mayden,R.L. TITLE Phylogenetic Relationships of the Western North American Phoxinins (Actinopterygii: Cyprinidae) as Inferred from Mitochondrial 12S and 16S Ribosomal RNA Sequences JOURNAL Mol. Phylogenet. Evol. (1998) In press STANDARD No information REFERENCE 2 (bases 1 to 1763) AUTHORS Simons,A.M. and Mayden,R.L. TITLE Direct Submission JOURNAL Submitted (15-DEC-1997) Department of Biological Sciences, The University of Alabama, Box 870344, Tuscaloosa, AL 35487-0344, USA STANDARD No information COMMENTS Sequence information (bases 1 to 10775) Corresponding GenBank entry: AF038477 BASE COUNT 598 a 377 c 361 g 374 t 9065 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~ug caaauugggu cg-cccugaG C--------- ----caaaca 301 |gcu--agc| uu-------- -|-------- ---------- ---------| -----(---- 361 ---------) -|-------- -------|-- -------(-- ---------- ---------- 421 -------)-- ---------- ---------- ---------- ---------- -----(---- 481 )---|----- --(-----)- ---------- ---------- ---------- -(------)- 541 ---------- ---------- ---- ---------- |------aac 841 uAA(ACCA)U UUU------- ---------- ---------- ---------- --------uu 901 ------(--- --)------- |uac-cuaA- -GUAC-G(-G GAGA)CGGAA -aaggu---- 961 -------<-- --ucaaccu- ---------- ---------- ---------- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- --->------ 1201 ---------- ---------- ---------- ---------< ---------- ---------- 1261 ---------- ---------- ---------> (------)-- ---------- ---|-(---) 1321 -------(-- -----)---- ---------- ---------- ---------- --<------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- >--------- ------(--- ---------- 1561 -------)-- ---------- ---------- -(-------) ---------- ---------- 1621 ---------- --AAAGCAAU AGAG-AA--- ---AGUACC( -GCAA-)GG- ---AAA-GC- 1681 ugaaagagaa gugaaacaac ccaua----- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- -----uaa-G C-AGAA ACAAAG---- --------<- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------> (--acuaaac 2041 --)------- -----CUU-G UACCUU(UU- GCAUC)AUGA |UUU-AGCCA GCacc--cu- 2101 caagcaaag- ---------- -------(-- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- -)-------- ---------- 2521 ----(----- )-----<--- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- agac->---- --(------) ---------- ---------- -cuuuaguuu 2701 gaa-acCCCG AA-ACCAA-G UG-AGCUACC CCG-AGA-CA GCCU------ ---------- 2761 -(-------- ---------- ---------- --------au auu-auuua) ---------- 2821 -GGGCUAA-C CC-GUCUCU( GUGGCAA-A) AGAG-UGGGA --AGAGCUC- CGGGUAG-AA 2881 GU(G-ACAG) ACC-UACC-G A-ACCUGGUG AUAGCU-GGU UGUCU--GAG AA-GUG-GAU 2941 (-AGAA)GUU CA-GC-CUCA UACA<----- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ------->-- ---|------ 3061 -|------|- ---------- ---------- --------(- --------)< ccccaaauca 3121 a--------u augu--aua- uuauu-a--- ---------- ---------- ---------- 3181 ----agacac ugagggaaau a--------- ---------- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---->----- ---------- 3301 ---------- ---------- ----|----- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- -------u-a -uGAG-AGUU AGUUG--AA- AG-GG(-GUA 3481 CAG)CCCUUU UA-gC----- -aAAGG(AUA -CAA)CCU-u uacag-g-ag -aa-UAA--- 3541 --agaucaua auaugua-a- aacaua---- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ------cugu u<-------- ---------- ---------- 3721 ---------- ---------- ---------- ---------- -->UUAGU-G GGC(CUAAAA 3781 GC-A)-GCCA -cCUA|A(A- UA)-|GAAAG C(--GUUAAA )GC|-uCag- acag--<--- 3841 --aaagaagu uuauuauacc gauaaaaaa- ---------- ---------- ---------- 3901 ->-------- -------|-- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- ---------- 4021 ---------- ---------- ---------- ---------- ---------- ---------- 4081 -------|uc uuau--uuc| c--c-ua|-- ---------- ---------- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- ---------- ---------- ---------- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- -----auuau auCAG-AU|- UA-ACCCAUG ---------- 4501 ---------- ---------- (ccaa---)< ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ------->-- ---------- ---------| CAUGGAAGAA AUUAUGC-UA 4681 GA|AUGAGUA -ACAA-GAA- ga-------- (-ccugcgcu ---------- ---------- 4741 ---------- -----)---- ---uc-|ucc ----uu-GCA CAA--gugua a|----acca 4801 gauc----gg ---------- ----(--aca ag)c-c|--a cuggaa---- ---------- 4861 ---cuuaa-- -cga------ ---------- -------(-- ---------- ------)<-- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 >--------- ---------- ---------- ----(----- ---------- ---------- 5041 ---------- ---------- ----)----- |-----|--- ---------- |--<------ 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ---------- ---------- 5221 ---------- ---------- ---------- ---------- ---------- ---------- 5281 ---------- ---------- ---------- ---------- ---------- ---------- 5341 ---------- ---------- ---------- ---------- ---------- ---------- 5401 ---------- ---------- ------->-- ---------- ---------- ---------- 5461 -----(---- ------)--- ---|------ --------|- ---------- -(-----)-- 5521 |--------- ---------- ---------- -----(---- )--------- ---------- 5581 --<------- ---------- ---------- ---------- ---------- ---------- 5641 ---------- ---------- ------->-- ---------- ---------- ---<------ 5701 ---------- acccaaccca agaggguaau gug-aacaac aaaaauauca agaagaauuc 5761 acaguuagac uaa------- ---------- ---------- ---------- ---------- 5821 ---------- ---------- ---------- ---------- ---------- ---------- 5881 ---------- ---------- ---------- ---------- ---------- ---------- 5941 ---------- ---------- ---------- ---------- ---------- ---------- 6001 ---------- ---------- ---------- ---------- ---------- ---------- 6061 ---------- ---------- ---------- ---------- ---------- ---------- 6121 ---------- ---------- ---------- ---------- ---------- ---------- 6181 ---------- ---------- ---------- ---------- ---------- ---------- 6241 ---------- ---------- ---------- ---------- ---------- ---------- 6301 ---------- ---------- ---------- ---------- ---------- ---------- 6361 ---------- ---------- ---------- ---------- ---------- ---------- 6421 ---------- ---------- ------>--- ---------- ---------- --ucgu-|-- 6481 ---UAACCC- -(CACACU)G G|AGUGC--- ----(uauuu uauaaa)--- -----ggaa| 6541 |---AGAC-U A--AAGGGUG -GGAA-AGGA ACUCGGCAAA ---------- ---------- 6601 ---------- ---------- ---------- ---------- ---------- ---------- 6661 ---------- ---------- ---------- ---------- ---------- ---------- 6721 ---------- ---------- ---------- ---------- ---------- ---------- 6781 ------(--- )--------c acAAGCCU|C GC---CUG-U UU(ACCAA)A AA-CAUC-GC 6841 CUCCUG|C-- ---------- ---------- (aacuaaauu ga----)--- ---------- 6901 ------GUA- UAG-GAGGUC CAGCCU<--- ---------- ---------- ---------- 6961 ---------- ---------- -------->G CC-CA-GU|G AC-------- ---------- 7021 ---------- --(------- ---------- ---------- ---------- ---------- 7081 ---------- ---------- --------ua cgg)------ ---------- ---------| 7141 ---GUUC-AA C-|GG-C|-C -GCGGU-(AU -UUUG)ACCG UG|C(AAA)- GG-UAGCGCA 7201 AUC-AC-U-U |GUCUCU(-U AAAU-)AGAG AC|CU-GUAU GAAUGGCUAG A-CGAGGGCU 7261 UA-------- ---------- -------ACU GUCUCCCCCA CCAA-GU-CA ----GUGAAA 7321 UU|G|AUCUA UC-CG(U-GC AGAAG)CGGG UAU----GAC CAUACAAGAC GAGAAG-ACC 7381 CUUUGG-|-A GCUUA--AGG UA|-ca-aac uua--u---| <--------- ---------- 7441 ---------- ---------- --->------ ---------- ---------- ---------- 7501 ---------- ---------- ---------- --<------- ------ccac guuaa-acaa 7561 cu-cuauaaa aaguaagaac uuaguggcaa a--------- ---------- ---------- 7621 ---------- ---------- ---------> --(------- -)-------- ---------- 7681 ---------- -------|-- ---------- ---------- ---------- ---------- 7741 -----(---- ----)----- ---------- ---------- ---------- --------<- 7801 ---------- ---------- ---------- ---------- ---------- ---------- 7861 ---------- ---------- ---------- ---------- ---------- ---------- 7921 ---------- ---------- ---------- ---------- ---------- ---------- 7981 ---------- ---------- ---------- ---------- ---------- ---------- 8041 ---------- ---------- ---------- ---------- ---------- ---------- 8101 ---------- ---------- ----->---- ----u-aaaa uuu---U-AC CUUCGGUUG( 8161 GGG)CG-AC- C|GCGGAG(- --------GA AAAACAAGC- )CUCC-GA|G |u|gg---|< 8221 ---------- ---------- ---------- ---------- ---------- ---------- 8281 ---------- ---------- ---------- ---------- ---------- ------acug 8341 gggcaaac-- cccua----- ---------- ---------- ---------- ->-------- 8401 ---------- ---------- ---------- ---------- ---------- ---------- 8461 ---------- ---------- ---------- ---------- ---------- ---------- 8521 ---------- ---------- ---------- ---------- ---------- ---------- 8581 ---------- ---------- ---------- ---------- ---------- ---------- 8641 ---------- ---------- ---------- ---------- ---------- ---------- 8701 ---------- ---------- ---------- ---------- --|------- ---------- 8761 --------aa gccaa-uag( -aaacau--- )cuaua-agc -cgcagaaua ucug------ 8821 ---------- ---------- ---------- ---------- ---------- --------ac 8881 c|---aaaaa UGAUC-cgac u--------- ---------- ---(------ ---------- 8941 ---------- ---------- ---------- ---------- -------cca ga)--|--ag 9001 ucgAUCAAC- |GAA-CCAAG UUACCC|UAG G|GAUAACAG |C-GCA-A-U CCCCUCCCAG 9061 AG(U--CCAU )AUCGACGAG --GGGGUUUA CG-ACCUCGA UGUU|GG--A U|C|AGGAC| 9121 AU-CC-UAAU GG-UG(--CA -GC)CGCUAU UAAG-GGU|U CGUU(UGUUC )AACGA-UUA 9181 A--AGUCCU- --ACGUGAUC UGAGUUCAGA CC|GG-A(GU AA)UCCAGGU CAGUUUCUAU 9241 CU|GUA---- --|-|<---- ---------- ---------- ---------- -----acgc- 9301 >--------- ---------- -uA-CUU-UU CC--(UAGU- AC(-GAAA)G GAUU-)GGAA 9361 A--AG-- ggggccc-au ac-------- 9421 -|-------- (-----) 9541 ---------- ---------- gcac-gcccc gcc------- ---------- -------cca 9601 ---------- ---aauuaau (gaaaac--a aauaa)a-uu -aa-guaaag g--------- 9661 ---------- ---------| ------(--- )--------- -------|gc 9961 uc-(aagaua a--)-ggaca ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10021 ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~~~ 10141 ~~~~~~~~~~ ~~~~~~~~~~ ~)~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10201 ~~~~~~~~~~ ~|~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10321 ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ||||| // LOCUS mt.G.ditae 10775 bp RNA RNA 02-JUN-1998 DEFINITION Mitochondrion Gila ditaenia.; . ACCESSION AF0384 6 KEYWORDS . SOURCE Mitochondrion Gila ditaenia. ORGANISM Mitochondrion Gila ditaenia. REFERENCE 1 (bases 1 to 2720) AUTHORS Simons,A.M. and Mayden,R.L. TITLE Phoxinins (Actinopterygii: Cyprinidae) as Inferred from Mitochondrial 12S and 16S Ribosomal RNA Sequences Phylogenetic Relationships of the Western North American JOURNAL Mol. Phylogenet. Evol. (1998) In press STANDARD No information REFERENCE 2 (bases 1 to 2720) AUTHORS Simons,A.M. and Mayden,R.L. TITLE Direct Submission JOURNAL Submitted (15-DEC-1997) Department of Biological Sciences, The University of Alabama, Box 870344, Tuscaloosa, AL 35487-0344, USA STANDARD No information COMMENTS Sequence information (bases 1 to 10775) Corresponding GenBank entry: AF038476 BASE COUNT 581 a 382 c 377 g 372 t 9063 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~ug caaguugggu cg-cccugaG C--------- ----caaaca 301 |gcu--agc| uu-------- -|-------- ---------- ---------| -----(---- 361 ---------) -|-------- -------|-- -------(-- ---------- ---------- 421 -------)-- ---------- ---------- ---------- ---------- -----(---- 481 )---|----- --(-----)- ---------- ---------- ---------- -(------)- 541 ---------- ---------- ---- ---------- |------aac 841 uAA(ACCA)U UUU------- ---------- ---------- ---------- --------uu 901 ------(--- --)------- |uac-cuaA- -GUAC-G(-G GAGA)CGGAA -aaggu---- 961 -------<-- --ucaaccu- ---------- ---------- ---------- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- --->------ 1201 ---------- ---------- ---------- ---------< ---------- ---------- 1261 ---------- ---------- ---------> (------)-- ---------- ---|-(---) 1321 -------(-- -----)---- ---------- ---------- ---------- --<------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- >--------- ------(--- ---------- 1561 -------)-- ---------- ---------- -(-------) ---------- ---------- 1621 ---------- --AAAGCAAU AGAG-AA--- ---AGUACC( -GCAA-)GG- ---AAA-GC- 1681 ugaaagagaa augaaacaac ccaua----- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- -----uaa-G C-AGAA ACAAAG---- --------<- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------> (--acuaaac 2041 --)------- -----CUU-G UACCUU(UU- GCAUC)AUGA |UUU-AGCCA GCacc--cu- 2101 caagcgaag- ---------- -------(-- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- -)-------- ---------- 2521 ----(----- )-----<--- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- agac->---- --(------) ---------- ---------- -cuuuaguuu 2701 gaa-acCCCG AA-ACCAG-G UG-AGCUACC CCG-AGA-CA GCCU------ ---------- 2761 -(-------- ---------- ---------- --------au guu-auuua) ---------- 2821 -GGGCUAA-C CC-GUCUCU( GUGGCAA-A) AGAG-UGGGA --AGAGCUC- CGGGUAG-AA 2881 GU(G-ACAG) ACC-UACC-G A-ACCUGGUG AUAGCU-GGU UGUCU--GAG AA-GUG-GAU 2941 (-AGAA)GUU CA-GC-CUCA UACA<----- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ------->-- ---|------ 3061 -|------|- ---------- ---------- --------(- --------)< ccccaaauc- 3121 --g------- acau-guaaa uuauuua--- ---------- ---------- ---------- 3181 ----agauau uaagggagac a--------- ---------- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---->----- ---------- 3301 ---------- ---------- ----|----- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- -------u-a -uGAG-AGUU AGUUG--AA- AG-GG(-GUA 3481 CAG)CCCUUU UA-AC----- -aAAGG(AUA -CAA)CCU-u ugcag-g-ag -aa-UAA--- 3541 --agaucaua auaugua-a- gacaua---- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ------cugu u<-------- ---------- ---------- 3721 ---------- ---------- ---------- ---------- -->UUAGU-G GGC(CUAAAA 3781 GC-A)-GCCA -cCUA|A(A- UA)-|GAAAG C(--GUUAAA )GC|-uCag- acag--<--- 3841 --aaagaggu uuauuauacc gauaagaua- ---------- ---------- ---------- 3901 ->-------- -------|-- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- ---------- 4021 ---------- ---------- ---------- ---------- ---------- ---------- 4081 -------|uc uuau--uuc| c--c-ua|-- ---------- ---------- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- ---------- ---------- ---------- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- -----guuau auCAG-AU|- CA-ACCCAUG ---------- 4501 ---------- ---------- (ccaa---)< ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ------->-- ---------- ---------| CAUGGAAGAG AUUAUGC-UA 4681 GA|AUGAGUA -ACAA-GAA- gg-------- (-ccugcacu ---------- ---------- 4741 ---------- -----)---- ---uc-|ucc ----uc-GCA CAA--gugua a|----acca 4801 gauc----gg ---------- ----(--aca ag)c-c|--a cuggaa---- ---------- 4861 ---cuuaa-- -cga------ ---------- -------(-- ---------- ------)<-- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 >--------- ---------- ---------- ----(----- ---------- ---------- 5041 ---------- ---------- ----)----- |-----|--- ---------- |--<------ 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ---------- ---------- 5221 ---------- ---------- ---------- ---------- ---------- ---------- 5281 ---------- ---------- ---------- ---------- ---------- ---------- 5341 ---------- ---------- ---------- ---------- ---------- ---------- 5401 ---------- ---------- ------->-- ---------- ---------- ---------- 5461 -----(---- ------)--- ---|------ --------|- ---------- -(-----)-- 5521 |--------- ---------- ---------- -----(---- )--------- ---------- 5581 --<------- ---------- ---------- ---------- ---------- ---------- 5641 ---------- ---------- ------->-- ---------- ---------- ---<------ 5701 ---------- acccaaccca agaggguaau gug-aacaac aaaaacauca aggaagaauu 5761 cacaacuaag cuaa------ ---------- ---------- ---------- ---------- 5821 ---------- ---------- ---------- ---------- ---------- ---------- 5881 ---------- ---------- ---------- ---------- ---------- ---------- 5941 ---------- ---------- ---------- ---------- ---------- ---------- 6001 ---------- ---------- ---------- ---------- ---------- ---------- 6061 ---------- ---------- ---------- ---------- ---------- ---------- 6121 ---------- ---------- ---------- ---------- ---------- ---------- 6181 ---------- ---------- ---------- ---------- ---------- ---------- 6241 ---------- ---------- ---------- ---------- ---------- ---------- 6301 ---------- ---------- ---------- ---------- ---------- ---------- 6361 ---------- ---------- ---------- ---------- ---------- ---------- 6421 ---------- ---------- ------>--- ---------- ---------- --ucgu-|-- 6481 ---UAACCC- -(CACACU)G G|AGUGC--- ----(uauuu uauaaa)--- -----ggaa| 6541 |---AGAC-U A--AAGGGUG -GGAA-AGGA ACUCGGCAAA ---------- ---------- 6601 ---------- ---------- ---------- ---------- ---------- ---------- 6661 ---------- ---------- ---------- ---------- ---------- ---------- 6721 ---------- ---------- ---------- ---------- ---------- ---------- 6781 ------(--- )--------c acAAGCCU|C GC---CUG-U UU(ACCAA)A AA-CAUC-GC 6841 CUCCUG|C-- ---------- ---------- (aacuaaguu ga----)--- ---------- 6901 ------GUA- UAG-GAGGUC CAGCCU<--- ---------- ---------- ---------- 6961 ---------- ---------- -------->G CC-CA-GU|G AC-------- ---------- 7021 ---------- --(------- ---------- ---------- ---------- ---------- 7081 ---------- ---------- --------ua cgg)------ ---------- ---------| 7141 ---GUUC-AA C-|GG-C|-C -GCGGU-(AU -UUUG)ACCG UG|C(AAA)- GG-UAGCGCA 7201 AUC-AC-U-U |GUCUCU(-U AAAU-)AGAG AC|CU-GUAU GAAUGGCUAG A-CGAGGGCU 7261 UA-------- ---------- -------ACU GUCUCCCCCA CCAA-GU-CA ----GUGAAA 7321 UU|G|AUCUA UC-CG(U-GC AGAAG)CGGG UAU----GAC UAUACAAGAC GAGAAG-ACC 7381 CUUUGG-|-A GCUUA--AGG UA|-ca-aac cua--c---| <--------- ---------- 7441 ---------- ---------- --->------ ---------- ---------- ---------- 7501 ---------- ---------- ---------- --<------- ------ccac guuaa-gcaa 7561 cu-ccauaaa aaguaagaac uuaguggcaa g--------- ---------- ---------- 7621 ---------- ---------- ---------> --(------- -)-------- ---------- 7681 ---------- -------|-- ---------- ---------- ---------- ---------- 7741 -----(---- ----)----- ---------- ---------- ---------- --------<- 7801 ---------- ---------- ---------- ---------- ---------- ---------- 7861 ---------- ---------- ---------- ---------- ---------- ---------- 7921 ---------- ---------- ---------- ---------- ---------- ---------- 7981 ---------- ---------- ---------- ---------- ---------- ---------- 8041 ---------- ---------- ---------- ---------- ---------- ---------- 8101 ---------- ---------- ----->---- ----u-aaag uuu---U-AC CUUCGGUUG( 8161 GGG)CG-AC- C|ACGGAG(- --------GA GAAGCAAGC- )CUCC-GA|G |u|gg---|< 8221 ---------- ---------- ---------- ---------- ---------- ---------- 8281 ---------- ---------- ---------- ---------- ---------- ------acug 8341 gggcaaac-- cccua----- ---------- ---------- ---------- ->-------- 8401 ---------- ---------- ---------- ---------- ---------- ---------- 8461 ---------- ---------- ---------- ---------- ---------- ---------- 8521 ---------- ---------- ---------- ---------- ---------- ---------- 8581 ---------- ---------- ---------- ---------- ---------- ---------- 8641 ---------- ---------- ---------- ---------- ---------- ---------- 8701 ---------- ---------- ---------- ---------- --|------- ---------- 8761 --------aa gcuaa-uag( -gaacac--- )cuaua-agc -cgcagaaua ucug------ 8821 ---------- ---------- ---------- ---------- ---------- --------ac 8881 c|---aaaaa UGAUC-cgac u--------- ---------- ---(------ ---------- 8941 ---------- ---------- ---------- ---------- -------ccg ua)--|--gg 9001 ucgAUCAAC- |GAA-CCAAG UUACCC|UAG G|GAUAACAG |C-GCA-A-U CCCCUCCCAG 9061 AG(U--CCAU )AUCGACGAG --GGGGUUUA CG-ACCUCGA UGUU|GG--A U|C|AGGAC| 9121 AU-CC-UAAU GG-UG(--CA -GC)CGCUAU UAAG-GGU|U CGUU(UGUUC )AACGA-UUA 9181 A--AGUCCU- --ACGUGAUC UGAGUUCAGA CC|GG-A(GU AA)UCCAGGU CAGUUUCUAU 9241 CU|GUA---- --|-|<---- ---------- ---------- ---------- -----acgc- 9301 >--------- ---------- -uA-CUU-UU CC--(UAGU- AC(-GAAA)G GAUU-)GGAA 9361 A--AG-- ggggccc-au gc-------- 9421 -|-------- (-----) 9541 ---------- ---------- gcac-gcccc gcc------- ---------- -------cca 9601 ---------- ---aauuaau (gaaacc--a aauaa)a-uu -aa-guaaag g--------- 9661 ---------- ---------| ------(--- )--------- -------|gu 9961 uc-(aagaua a--)-ggaca ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10021 ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~~~ 10141 ~~~~~~~~~~ ~~~~~~~~~~ ~)~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10201 ~~~~~~~~~~ ~|~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10321 ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ||||| // LOCUS mt.G.nigre 10775 bp RNA RNA 02-JUN-1998 DEFINITION Mitochondrion Gila nigrescens.; . ACCESSION AF0384 8 KEYWORDS . SOURCE Mitochondrion Gila nigrescens. ORGANISM Mitochondrion Gila nigrescens. REFERENCE 1 (bases 1 to 2717) AUTHORS Simons,A.M. and Mayden,R.L. TITLE Phoxinins (Actinopterygii: Cyprinidae) as Inferred from Mitochondrial 12S and 16S Ribosomal RNA Sequences Phylogenetic Relationships of the Western North American JOURNAL Mol. Phylogenet. Evol. (1998) In press STANDARD No information REFERENCE 2 (bases 1 to 2717) AUTHORS Simons,A.M. and Mayden,R.L. TITLE Direct Submission JOURNAL Submitted (15-DEC-1997) Department of Biological Sciences, The University of Alabama, Box 870344, Tuscaloosa, AL 35487-0344, USA STANDARD No information COMMENTS Sequence information (bases 1 to 10775) Corresponding GenBank entry: AF038478 BASE COUNT 592 a 379 c 363 g 375 t 9066 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~ug caaguugggu cg-cccugaG C--------- ----caaaca 301 |gcu--agc| uu-------- -|-------- ---------- ---------| -----(---- 361 ---------) -|-------- -------|-- -------(-- ---------- ---------- 421 -------)-- ---------- ---------- ---------- ---------- -----(---- 481 )---|----- --(-----)- ---------- ---------- ---------- -(------)- 541 ---------- ---------- ---- ---------- |------aac 841 uAA(ACCA)U UUU------- ---------- ---------- ---------- --------uu 901 ------(--- --)------- |uac-cuaA- -GUAC-G(-G GAGA)CGGAA -aaggu---- 961 -------<-- --ucaaccu- ---------- ---------- ---------- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- --->------ 1201 ---------- ---------- ---------- ---------< ---------- ---------- 1261 ---------- ---------- ---------> (------)-- ---------- ---|-(---) 1321 -------(-- -----)---- ---------- ---------- ---------- --<------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- >--------- ------(--- ---------- 1561 -------)-- ---------- ---------- -(-------) ---------- ---------- 1621 ---------- --AAAGCAAU AGAG-AA--- ---AGUACC( -GCAA-)GG- ---AAA-GC- 1681 ugaaagagaa augaaacaac ccaua----- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- -----uaa-G C-AGAA ACAAAG---- --------<- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------> (--acuaaac 2041 --)------- -----CUU-G UACCUU(UU- GCAUC)AUGA |UUU-AGCCA GCacc--cu- 2101 caagcaaag- ---------- -------(-- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- -)-------- ---------- 2521 ----(----- )-----<--- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- agac->---- --(------) ---------- ---------- -cuuu-guuu 2701 gaa-acCCCG AA-ACCGG-G UG-AGCUACC CCG-AGA-CA GCCU------ ---------- 2761 -(-------- ---------- ---------- --------au acu-auuua) ---------- 2821 -GGGCUAA-C CC-GUCUCU( GUGGCAA-A) AGAG-UGGGA --AGAGCUC- CGGGUAG-AA 2881 GU(G-ACAG) ACC-UACC-G A-ACCUGGUG AUAGCU-GGU UAUCU--GAG AA-GUG-GAU 2941 (-AGAA)GUU CA-GC-CUCA UACA<----- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ------->-- ---|------ 3061 -|------|- ---------- ---------- --------(- --------)< ccccaaauca 3121 a--------u auau--aua- cuauu-a--- ---------- ---------- ---------- 3181 ----agauau uaagggagau a--------- ---------- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---->----- ---------- 3301 ---------- ---------- ----|----- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- -------u-a -uGAG-AGUU AGUUG--AA- AG-GG(-GUA 3481 CAG)CCCUUU UA-AC----- -aAAGG(AUA -CAA)CCU-u ugcag-g-ag -aa-UAA--- 3541 --agaucaua auaugua-a- gacaua---- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ------cugu u<-------- ---------- ---------- 3721 ---------- ---------- ---------- ---------- -->UUAGU-G GGC(CUAAAA 3781 GC-A)-GCCA -cCUA|C(A- UA)-|GAAAG C(--GUUAAA )GC|-uCag- acag--<--- 3841 --aaagaagu uuauuauacc gauaaaaaa- ---------- ---------- ---------- 3901 ->-------- -------|-- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- ---------- 4021 ---------- ---------- ---------- ---------- ---------- ---------- 4081 -------|uc uuau--uuc| c--c-ua|-- ---------- ---------- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- ---------- ---------- ---------- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- -----auuau auCAG-AU|- CA-ACCCAUG ---------- 4501 ---------- ---------- (ccaa---)< ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ------->-- ---------- ---------| CAUGGAAGAG AUUAUGC-UA 4681 GA|AUGAGUA -ACAA-GAA- ga-------- (-ccugcgcu ---------- ---------- 4741 ---------- -----)---- ---uc-|ucc ----uu-GCA CAA--gugua a|----acca 4801 gauc----gg ---------- ----(--aca ag)c-c|--a cuggaa---- ---------- 4861 ---cuuaa-- -cga------ ---------- -------(-- ---------- ------)<-- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 >--------- ---------- ---------- ----(----- ---------- ---------- 5041 ---------- ---------- ----)----- |-----|--- ---------- |--<------ 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ---------- ---------- 5221 ---------- ---------- ---------- ---------- ---------- ---------- 5281 ---------- ---------- ---------- ---------- ---------- ---------- 5341 ---------- ---------- ---------- ---------- ---------- ---------- 5401 ---------- ---------- ------->-- ---------- ---------- ---------- 5461 -----(---- ------)--- ---|------ --------|- ---------- -(-----)-- 5521 |--------- ---------- ---------- -----(---- )--------- ---------- 5581 --<------- ---------- ---------- ---------- ---------- ---------- 5641 ---------- ---------- ------->-- ---------- ---------- ---<------ 5701 ---------- acccaaccca agaggguagu gugaccaaca aagauaucaa gaagaauuca 5761 caauuaaacu aa-------- ---------- ---------- ---------- ---------- 5821 ---------- ---------- ---------- ---------- ---------- ---------- 5881 ---------- ---------- ---------- ---------- ---------- ---------- 5941 ---------- ---------- ---------- ---------- ---------- ---------- 6001 ---------- ---------- ---------- ---------- ---------- ---------- 6061 ---------- ---------- ---------- ---------- ---------- ---------- 6121 ---------- ---------- ---------- ---------- ---------- ---------- 6181 ---------- ---------- ---------- ---------- ---------- ---------- 6241 ---------- ---------- ---------- ---------- ---------- ---------- 6301 ---------- ---------- ---------- ---------- ---------- ---------- 6361 ---------- ---------- ---------- ---------- ---------- ---------- 6421 ---------- ---------- ------>--- ---------- ---------- --ucgu-|-- 6481 ---UAACCC- -(CACACU)G G|AGUGC--- ----(uauuu uauaag)--- -----ggaa| 6541 |---AGAC-U A--AAAGGUG -GGAA-AGGA ACUCGGCAAA ---------- ---------- 6601 ---------- ---------- ---------- ---------- ---------- ---------- 6661 ---------- ---------- ---------- ---------- ---------- ---------- 6721 ---------- ---------- ---------- ---------- ---------- ---------- 6781 ------(--- )--------c acAAGCCU|C GC---CUG-U UU(ACCAA)A AA-CAUC-GC 6841 CUCCUG|C-- ---------- ---------- (aacuaaacu ga----)--- ---------- 6901 ------GUA- UAG-GAGGUC CAGCCU<--- ---------- ---------- ---------- 6961 ---------- ---------- -------->G CC-CA-GU|G AC-------- ---------- 7021 ---------- --(------- ---------- ---------- ---------- ---------- 7081 ---------- ---------- --------ua cgg)------ ---------- ---------| 7141 ---GUUC-AA C-|GG-C|-C -GCGGU-(AU -UUUG)ACCG UG|C(AAA)- GG-UAGCGCA 7201 AUC-AC-U-U |GUCUCU(-U AAAU-)AGAG AC|CU-GUAU GAAUGGCUAG A-CGAGGGCU 7261 UA-------- ---------- -------ACU GUCUCCCCCA CCAA-GU-CA ----GUGAAA 7321 UU|G|AUCUA UC-CG(U-GC AGAAG)CGGG UAU----AAC UAUACAAGAC GAGAAG-ACC 7381 CUUUGG-|-A GCUUA--AGG UA|-ca-aau uua--u---| <--------- ---------- 7441 ---------- ---------- --->------ ---------- ---------- ---------- 7501 ---------- ---------- ---------- --<------- ------ccac guuaa-acaa 7561 cu-ccauaaa aaguaagaac uuaguggcaa a--------- ---------- ---------- 7621 ---------- ---------- ---------> --(------- -)-------- ---------- 7681 ---------- -------|-- ---------- ---------- ---------- ---------- 7741 -----(---- ----)----- ---------- ---------- ---------- --------<- 7801 ---------- ---------- ---------- ---------- ---------- ---------- 7861 ---------- ---------- ---------- ---------- ---------- ---------- 7921 ---------- ---------- ---------- ---------- ---------- ---------- 7981 ---------- ---------- ---------- ---------- ---------- ---------- 8041 ---------- ---------- ---------- ---------- ---------- ---------- 8101 ---------- ---------- ----->---- ----u-aaac uuu---U-AC CUUCGGUUG( 8161 GGG)CG-AC- C|ACGGAA(- --------GA AAAGCAAGC- )CUCC-GA|G |u|gg---|< 8221 ---------- ---------- ---------- ---------- ---------- ---------- 8281 ---------- ---------- ---------- ---------- ---------- ------acug 8341 ggguaaac-- cccua----- ---------- ---------- ---------- ->-------- 8401 ---------- ---------- ---------- ---------- ---------- ---------- 8461 ---------- ---------- ---------- ---------- ---------- ---------- 8521 ---------- ---------- ---------- ---------- ---------- ---------- 8581 ---------- ---------- ---------- ---------- ---------- ---------- 8641 ---------- ---------- ---------- ---------- ---------- ---------- 8701 ---------- ---------- ---------- ---------- --|------- ---------- 8761 --------aa gccaa-uag( -aaacau--- )cuaua-agc -cgcagaaua ucug------ 8821 ---------- ---------- ---------- ---------- ---------- --------ac 8881 c|---aaaaa UGAUC-cgac c--------- ---------- ---(------ ---------- 8941 ---------- ---------- ---------- ---------- -------cca ga)--|--gg 9001 ucgAUCAAC- |GGA-CCAAG UUACCC|UAG G|GAUAACAG |C-GCA-A-U CCCCUCCCAG 9061 AG(U--CCAU )AUCGACGAG --GGGGUUUA CG-ACCUCGA UGUU|GG--A U|C|AGGAC| 9121 AU-CC-UAAU GG-UG(--CA -GC)CGCUAU UAAG-GGU|U CGUU(UGUUC )AACGA-UUA 9181 A--AGUCCU- --ACGUGAUC UGAGUUCAGA CC|GG-A(GU AA)UCCAGGU CAGUUUCUAU 9241 CU|GUA---- --|-|<---- ---------- ---------- ---------- -----acgc- 9301 >--------- ---------- -uA-CUU-UU CC--(UAGU- AC(-GAAA)G GAUU-)GGAA 9361 A--AG-- ggggccc-au gc-------- 9421 -|-------- (-----) 9541 ---------- ---------- gcac-gcccc gcc------- ---------- -------cca 9601 ---------- ---aauuaau (gaaaac--a aauaa)a-uu -aa-guaaag g--------- 9661 ---------- ---------| ------(--- )--------- -------|gu 9961 uc-(aagaua a--)-ggaca ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10021 ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~~~ 10141 ~~~~~~~~~~ ~~~~~~~~~~ ~)~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10201 ~~~~~~~~~~ ~|~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10321 ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ||||| // LOCUS mt.G.orcut 10775 bp RNA RNA 02-JUN-1998 DEFINITION Mitochondrion Gila orcutti.; . ACCESSION AF0384 9 KEYWORDS . SOURCE Mitochondrion Gila orcutti. ORGANISM Mitochondrion Gila orcutti. REFERENCE 1 (bases 1 to 2719) AUTHORS Simons,A.M. and Mayden,R.L. TITLE Phoxinins (Actinopterygii: Cyprinidae) as Inferred from Mitochondrial 12S and 16S Ribosomal RNA Sequences Phylogenetic Relationships of the Western North American JOURNAL Mol. Phylogenet. Evol. (1998) In press STANDARD No information REFERENCE 2 (bases 1 to 2719) AUTHORS Simons,A.M. and Mayden,R.L. TITLE Direct Submission JOURNAL Submitted (15-DEC-1997) Department of Biological Sciences, The University of Alabama, Box 870344, Tuscaloosa, AL 35487-0344, USA STANDARD No information COMMENTS Sequence information (bases 1 to 10775) Corresponding GenBank entry: AF038479 BASE COUNT 591 a 375 c 366 g 380 t 9063 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~ug caaguugggu cg-cccugaG C--------- ----caaaca 301 |gcu--agc| uu-------- -|-------- ---------- ---------| -----(---- 361 ---------) -|-------- -------|-- -------(-- ---------- ---------- 421 -------)-- ---------- ---------- ---------- ---------- -----(---- 481 )---|----- --(-----)- ---------- ---------- ---------- -(------)- 541 ---------- ---------- ---- ---------- |------aac 841 uAA(ACCA)U UUU------- ---------- ---------- ---------- --------uu 901 ------(--- --)------- |uac-cuaA- -GUAC-G(-G GAGA)CGGAA -aaggu---- 961 -------<-- --ucaaccu- ---------- ---------- ---------- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- --->------ 1201 ---------- ---------- ---------- ---------< ---------- ---------- 1261 ---------- ---------- ---------> (------)-- ---------- ---|-(---) 1321 -------(-- -----)---- ---------- ---------- ---------- --<------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- >--------- ------(--- ---------- 1561 -------)-- ---------- ---------- -(-------) ---------- ---------- 1621 ---------- --AAAGCAAU AGAG-AA--- ---AGUACC( -GCAA-)GG- ---AAA-GC- 1681 ugaaagagaa augaaacaac cuaua----- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- -----uaa-G C-AGAA ACAAAG---- --------<- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------> (--acuaaac 2041 --)------- -----CUU-G UACCUU(UU- GCAUC)AUGA |UUU-AGCCA GCacc--cu- 2101 caagcaaag- ---------- -------(-- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- -)-------- ---------- 2521 ----(----- )-----<--- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- agac->---- --(------) ---------- ---------- -cuuuaguuu 2701 gaa-acCCCG AA-ACCAG-G UG-AGCUACC CCG-AGA-CA GCCU------ ---------- 2761 -(-------- ---------- ---------- --------au guu-auuua) ---------- 2821 -GGGCUAA-C CC-GUCUCU( GUGGCAA-A) AGAG-UGGGA --AGAGCUC- CGGGUAG-AA 2881 GU(G-ACAG) ACC-UAUU-G A-ACCUGGUG AUAGCU-GGU UAUCU--GAG AA-GUG-GAU 2941 (-AGAA)GUU CA-GC-CUCG UACA<----- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ------->-- ---|------ 3061 -|------|- ---------- ---------- --------(- --------)< ccccaaauca 3121 a--------- -cauuuguau acuauua--- ---------- ---------- ---------- 3181 ----agauac uaagggaaau a--------- ---------- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---->----- ---------- 3301 ---------- ---------- ----|----- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- -------u-a -uGAG-AGUU AGUUG--AA- AG-GG(-GUA 3481 CAG)CCCUUU UA-AC----- -aAAGG(AUA -CAA)CCU-u ugcag-g-ag -aa-UAA--- 3541 --agaucaua auaugua-a- aacaua---- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ------cugu u<-------- ---------- ---------- 3721 ---------- ---------- ---------- ---------- -->UUAGU-G GGC(CUAAAA 3781 GC-A)-GCCA -uCUA|A(G- UA)-|GAAAG C(--GUUAAA )GC|-uCag- acag--<--- 3841 --aaagaagu uuauuauacc gauaaaaaa- ---------- ---------- ---------- 3901 ->-------- -------|-- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- ---------- 4021 ---------- ---------- ---------- ---------- ---------- ---------- 4081 -------|uc uuau--uuc| c--c-ua|-- ---------- ---------- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- ---------- ---------- ---------- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- -----uuuau auCAG-Au|- UA-ACCCAUG ---------- 4501 ---------- ---------- (ccaa---)< ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ------->-- ---------- ---------| CAUGGAAGAA AUUAUGC-UA 4681 GA|AUGAGUA -ACAA-GAA- ga-------- (-ccugcgcu ---------- ---------- 4741 ---------- -----)---- ---uc-|ucc ----uu-GCA CAA--gugua a|----acca 4801 gauc----gg ---------- ----(--acu aa)c-c|--a cuggaa---- ---------- 4861 ---cuuaa-- -cga------ ---------- -------(-- ---------- ------)<-- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 >--------- ---------- ---------- ----(----- ---------- ---------- 5041 ---------- ---------- ----)----- |-----|--- ---------- |--<------ 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ---------- ---------- 5221 ---------- ---------- ---------- ---------- ---------- ---------- 5281 ---------- ---------- ---------- ---------- ---------- ---------- 5341 ---------- ---------- ---------- ---------- ---------- ---------- 5401 ---------- ---------- ------->-- ---------- ---------- ---------- 5461 -----(---- ------)--- ---|------ --------|- ---------- -(-----)-- 5521 |--------- ---------- ---------- -----(---- )--------- ---------- 5581 --<------- ---------- ---------- ---------- ---------- ---------- 5641 ---------- ---------- ------->-- ---------- ---------- ---<------ 5701 ---------- acccaaccca agagaguaau gugagcaaca aagauaucaa gaaaaauuca 5761 caa-uuaaac uaa------- ---------- ---------- ---------- ---------- 5821 ---------- ---------- ---------- ---------- ---------- ---------- 5881 ---------- ---------- ---------- ---------- ---------- ---------- 5941 ---------- ---------- ---------- ---------- ---------- ---------- 6001 ---------- ---------- ---------- ---------- ---------- ---------- 6061 ---------- ---------- ---------- ---------- ---------- ---------- 6121 ---------- ---------- ---------- ---------- ---------- ---------- 6181 ---------- ---------- ---------- ---------- ---------- ---------- 6241 ---------- ---------- ---------- ---------- ---------- ---------- 6301 ---------- ---------- ---------- ---------- ---------- ---------- 6361 ---------- ---------- ---------- ---------- ---------- ---------- 6421 ---------- ---------- ------>--- ---------- ---------- --ucgu-|-- 6481 ---UAACCC- -(CACACU)G G|AGUGC--- ----(uauuu uauaaa)--- -----ggaa| 6541 |---AGAC-U A--AAAGGUG -GGAA-AGGA ACUCGGCAAA ---------- ---------- 6601 ---------- ---------- ---------- ---------- ---------- ---------- 6661 ---------- ---------- ---------- ---------- ---------- ---------- 6721 ---------- ---------- ---------- ---------- ---------- ---------- 6781 ------(--- )--------c acAAGCCU|C GC---CUG-U UU(ACCAA)A AA-CAUC-GC 6841 CUCCUG|C-- ---------- ---------- (aacuaaguu ga----)--- ---------- 6901 ------GUA- UAG-GAGGUC CAGCCU<--- ---------- ---------- ---------- 6961 ---------- ---------- -------->G CC-CA-GU|G AC-------- ---------- 7021 ---------- --(------- ---------- ---------- ---------- ---------- 7081 ---------- ---------- --------ua cgg)------ ---------- ---------| 7141 ---GUUC-AA C-|GG-C|-C -GCGGU-(AU -UUUG)ACCG UG|C(AAA)- GG-UAGCGCA 7201 AUC-AC-U-U |GUCUCU(-U AAAU-)AGAG AC|CU-GUAU GAAUGGCUAG A-CGAGGGCU 7261 UA-------- ---------- -------ACU GUCUCCCCCA UCAA-GU-CA ----GUGAAA 7321 UU|G|AUCUA UC-CG(U-GC AGAAG)CGGG UAU----AAU CAUACAAGAC GAGAAG-ACC 7381 CUUUGG-|-A GCUUA--AGG UA|-ca-aau uua--u---| <--------- ---------- 7441 ---------- ---------- --->------ ---------- ---------- ---------- 7501 ---------- ---------- ---------- --<------- ------ccac gucaa-acaa 7561 cu-ccauaag aaguaagaac uuaguggcag a--------- ---------- ---------- 7621 ---------- ---------- ---------> --(------- -)-------- ---------- 7681 ---------- -------|-- ---------- ---------- ---------- ---------- 7741 -----(---- ----)----- ---------- ---------- ---------- --------<- 7801 ---------- ---------- ---------- ---------- ---------- ---------- 7861 ---------- ---------- ---------- ---------- ---------- ---------- 7921 ---------- ---------- ---------- ---------- ---------- ---------- 7981 ---------- ---------- ---------- ---------- ---------- ---------- 8041 ---------- ---------- ---------- ---------- ---------- ---------- 8101 ---------- ---------- ----->---- ----u-aaaa uuu---U-AC CUUCGGUUG( 8161 GGG)CG-AC- C|ACGGAG(- --------AA AAAGAAAGC- )CUCC-GA|G |u|gg---|< 8221 ---------- ---------- ---------- ---------- ---------- ---------- 8281 ---------- ---------- ---------- ---------- ---------- ------acug 8341 gggcaaac-- cccua----- ---------- ---------- ---------- ->-------- 8401 ---------- ---------- ---------- ---------- ---------- ---------- 8461 ---------- ---------- ---------- ---------- ---------- ---------- 8521 ---------- ---------- ---------- ---------- ---------- ---------- 8581 ---------- ---------- ---------- ---------- ---------- ---------- 8641 ---------- ---------- ---------- ---------- ---------- ---------- 8701 ---------- ---------- ---------- ---------- --|------- ---------- 8761 --------aa gccaa-uag( -aaacgu--- )cuaua-ggc -cgcagaaua ucug------ 8821 ---------- ---------- ---------- ---------- ---------- --------ac 8881 c|---aagaa UGAUC-cgac c--------- ---------- ---(------ ---------- 8941 ---------- ---------- ---------- ---------- -------cca ga)--|--gg 9001 ucgAUCAAC- |GAA-CCAAG UUACCC|UAG G|GAUAACAG |C-GCA-A-U CCCCUCCCAG 9061 AG(U--CCAU )AUCGACGAG --GGGGUUUA CG-ACCUCGA UGUU|GG--A U|C|AGGAC| 9121 AU-CC-UAAU GG-UG(--CA -GC)CGCUAU UAAG-GGU|U CGUU(UGUUC )AACGA-UUA 9181 A--AGUCCU- --ACGUGAUC UGAGUUCAGA CC|GG-A(GU AA)UCCAGGU CAGUUUCUAU 9241 CU|GUA---- --|-|<---- ---------- ---------- ---------- -----gcgc- 9301 >--------- ---------- -uA-CUU-UU CC--(UAGU- AC(-GAAA)G GAUU-)GGAA 9361 A--AG-- ggggccc-au gc-------- 9421 -|-------- (-----) 9541 ---------- ---------- gcac-gcccc gcc------- ---------- -------cca 9601 ---------- ---aauuaau (gaaaac--a aauaa)a-uu -aa-guaaag g--------- 9661 ---------- ---------| ------(--- )--------- -------|gu 9961 uc-(aagaua a--)-ggaca ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10021 ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~~~ 10141 ~~~~~~~~~~ ~~~~~~~~~~ ~)~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10201 ~~~~~~~~~~ ~|~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10321 ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ||||| // LOCUS mt.G.pando 10775 bp RNA RNA 02-JUN-1998 DEFINITION Mitochondrion Gila pandora.; . ACCESSION AF0384 0 KEYWORDS . SOURCE Mitochondrion Gila pandora. ORGANISM Mitochondrion Gila pandora. REFERENCE 1 (bases 1 to 2718) AUTHORS Simons,A.M. and Mayden,R.L. TITLE Phoxinins (Actinopterygii: Cyprinidae) as Inferred from Mitochondrial 12S and 16S Ribosomal RNA Sequences Phylogenetic Relationships of the Western North American JOURNAL Mol. Phylogenet. Evol. (1998) In press STANDARD No information REFERENCE 2 (bases 1 to 2718) AUTHORS Simons,A.M. and Mayden,R.L. TITLE Direct Submission JOURNAL Submitted (15-DEC-1997) Department of Biological Sciences, The University of Alabama, Box 870344, Tuscaloosa, AL 35487-0344, USA STANDARD No information COMMENTS Sequence information (bases 1 to 10775) Corresponding GenBank entry: AF038480 BASE COUNT 597 a 379 c 360 g 374 t 9065 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~ug caaguugggu cg-cccugaG C--------- ----caaaca 301 |gcu--agc| uu-------- -|-------- ---------- ---------| -----(---- 361 ---------) -|-------- -------|-- -------(-- ---------- ---------- 421 -------)-- ---------- ---------- ---------- ---------- -----(---- 481 )---|----- --(-----)- ---------- ---------- ---------- -(------)- 541 ---------- ---------- ---- ---------- |------aac 841 cAA(ACCA)U UUU------- ---------- ---------- ---------- --------uu 901 ------(--- --)------- |uac-cuaA- -GUAC-G(-G GAGA)CGGAA -aaggu---- 961 -------<-- --ucaaccu- ---------- ---------- ---------- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- --->------ 1201 ---------- ---------- ---------- ---------< ---------- ---------- 1261 ---------- ---------- ---------> (------)-- ---------- ---|-(---) 1321 -------(-- -----)---- ---------- ---------- ---------- --<------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- >--------- ------(--- ---------- 1561 -------)-- ---------- ---------- -(-------) ---------- ---------- 1621 ---------- --AAAGCAAU AGAG-AA--- ---AGUACC( -GCAA-)GG- ---AAA-GC- 1681 ugaaagagaa augaaacaac ccaua----- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- -----uaa-G C-AGAA ACAAAG---- --------<- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------> (--acuaaac 2041 --)------- -----CUU-G UACCUU(UU- GCAUC)AUGA |UUU-AGCCA GCacc--cu- 2101 caagcaaag- ---------- -------(-- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- -)-------- ---------- 2521 ----(----- )-----<--- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- agac->---- --(------) ---------- ---------- -cuuuaguuu 2701 gaa-acCCCG AA-ACCAG-G UG-AGCUACC CCG-AGA-CA GCCU------ ---------- 2761 -(-------- ---------- ---------- --------au auu-auuua) ---------- 2821 -GGGCUAA-C CC-GUCUCU( GUGGCAA-A) AGAG-UGGGA --AGAGCUC- CGGGUAG-AA 2881 GU(G-ACAG) ACC-UACC-G A-ACCUGGUG AUAGCU-GGU UAUCU--GAG AA-GUG-GAU 2941 (-AGAA)GUU CA-GC-CUCA UAUA<----- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ------->-- ---|------ 3061 -|------|- ---------- ---------- --------(- --------)< ccccaaauca 3121 a--------- -cauauaua- uuauu-a--- ---------- ---------- ---------- 3181 ----agauau uaagggaaau ---------- ---------- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---->----- ---------- 3301 ---------- ---------- ----|----- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ------au-a -uGAG-AGUU AGUUG--AA- AG-GG(-GUA 3481 CAG)CCCUUU UA-AC----- -aAAGG(AUA -CAA)CCU-u uacag-g-ag -aa-UAA--- 3541 --agaucaua auaugua-a- aacaua---- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ------cugu u<-------- ---------- ---------- 3721 ---------- ---------- ---------- ---------- -->UUAGU-G GGC(CUAAAA 3781 GC-A)-GCCA -cCUA|A(A- UA)-|GAAAG C(--GUUAAA )GC|-uCag- acag--<--- 3841 --agaggagu uuauuauacc gauaaaaaa- ---------- ---------- ---------- 3901 ->-------- -------|-- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- ---------- 4021 ---------- ---------- ---------- ---------- ---------- ---------- 4081 -------|uc uuau--uuc| c--c-ua|-- ---------- ---------- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- ---------- ---------- ---------- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- -----auuau auCAG-AU|- CA-ACCCAUG ---------- 4501 ---------- ---------- (ccaa---)< ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ------->-- ---------- ---------| CAUGGAAGAG AUUAUGC-UA 4681 GA|AUGAGUA -ACAA-GAA- ga-------- (-ccugcgcu ---------- ---------- 4741 ---------- -----)---- ---uc-|ucc ----uu-GCA CAA--gugua a|----acca 4801 gauc----gg ---------- ----(--aca ag)c-c|--a cuggaa---- ---------- 4861 ---cuuaa-- -cga------ ---------- -------(-- ---------- ------)<-- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 >--------- ---------- ---------- ----(----- ---------- ---------- 5041 ---------- ---------- ----)----- |-----|--- ---------- |--<------ 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ---------- ---------- 5221 ---------- ---------- ---------- ---------- ---------- ---------- 5281 ---------- ---------- ---------- ---------- ---------- ---------- 5341 ---------- ---------- ---------- ---------- ---------- ---------- 5401 ---------- ---------- ------->-- ---------- ---------- ---------- 5461 -----(---- ------)--- ---|------ --------|- ---------- -(-----)-- 5521 |--------- ---------- ---------- -----(---- )--------- ---------- 5581 --<------- ---------- ---------- ---------- ---------- ---------- 5641 ---------- ---------- ------->-- ---------- ---------- ---<------ 5701 ---------- acccaaccca agaggguaau gug-agcaac aaaaauauca agaagaauuc 5761 acaauuaaac uaa------- ---------- ---------- ---------- ---------- 5821 ---------- ---------- ---------- ---------- ---------- ---------- 5881 ---------- ---------- ---------- ---------- ---------- ---------- 5941 ---------- ---------- ---------- ---------- ---------- ---------- 6001 ---------- ---------- ---------- ---------- ---------- ---------- 6061 ---------- ---------- ---------- ---------- ---------- ---------- 6121 ---------- ---------- ---------- ---------- ---------- ---------- 6181 ---------- ---------- ---------- ---------- ---------- ---------- 6241 ---------- ---------- ---------- ---------- ---------- ---------- 6301 ---------- ---------- ---------- ---------- ---------- ---------- 6361 ---------- ---------- ---------- ---------- ---------- ---------- 6421 ---------- ---------- ------>--- ---------- ---------- --ucgu-|-- 6481 ---UAACCC- -(CACACU)G G|AGUGC--- ----(uauuu uauaaa)--- -----ggaa| 6541 |---AGAC-U A--AAAGGUG -GGAA-AGGA ACUCGGCAAA ---------- ---------- 6601 ---------- ---------- ---------- ---------- ---------- ---------- 6661 ---------- ---------- ---------- ---------- ---------- ---------- 6721 ---------- ---------- ---------- ---------- ---------- ---------- 6781 ------(--- )--------c acAAGCCU|C GC---CUG-U UU(ACCAA)A AA-CAUC-GC 6841 CUCCUG|C-- ---------- ---------- (aacuaaauu ga----)--- ---------- 6901 ------GUA- UAG-GAGGUC CAGCCU<--- ---------- ---------- ---------- 6961 ---------- ---------- -------->G CC-CA-GU|G AC-------- ---------- 7021 ---------- --(------- ---------- ---------- ---------- ---------- 7081 ---------- ---------- --------ua cgg)------ ---------- ---------| 7141 ---GUUC-AA C-|GG-C|-C -GCGGU-(AU -UUUG)ACCG UG|C(AAA)- GG-UAGCGCA 7201 AUC-AC-U-U |GUCUCU(-U AAAU-)AGAG AC|CU-GUAU GAAUGGCUAG A-CGAGGGCU 7261 UA-------- ---------- -------ACU GUCUCCCCCA CCAA-GU-CA ----GUGAAA 7321 UU|G|AUCUA UC-CG(U-GC AGAAG)CGGG UAU----GAC CAUACAAGAC GAGAAG-ACC 7381 CUUUGG-|-A GCUUA--AGG UA|-ca-aau uua--u---| <--------- ---------- 7441 ---------- ---------- --->------ ---------- ---------- ---------- 7501 ---------- ---------- ---------- --<------- ------ccac guuaa-acaa 7561 cu-ccauaaa aaguaagaac uuaguggcga a--------- ---------- ---------- 7621 ---------- ---------- ---------> --(------- -)-------- ---------- 7681 ---------- -------|-- ---------- ---------- ---------- ---------- 7741 -----(---- ----)----- ---------- ---------- ---------- --------<- 7801 ---------- ---------- ---------- ---------- ---------- ---------- 7861 ---------- ---------- ---------- ---------- ---------- ---------- 7921 ---------- ---------- ---------- ---------- ---------- ---------- 7981 ---------- ---------- ---------- ---------- ---------- ---------- 8041 ---------- ---------- ---------- ---------- ---------- ---------- 8101 ---------- ---------- ----->---- ----u-aaac uuu---U-AC CUUCGGUUG( 8161 GGG)CG-AC- C|ACGGAA(- --------GA AAAACAAGC- )CUCC-GA|G |u|gg---|< 8221 ---------- ---------- ---------- ---------- ---------- ---------- 8281 ---------- ---------- ---------- ---------- ---------- ------acug 8341 gggcgaac-- cccua----- ---------- ---------- ---------- ->-------- 8401 ---------- ---------- ---------- ---------- ---------- ---------- 8461 ---------- ---------- ---------- ---------- ---------- ---------- 8521 ---------- ---------- ---------- ---------- ---------- ---------- 8581 ---------- ---------- ---------- ---------- ---------- ---------- 8641 ---------- ---------- ---------- ---------- ---------- ---------- 8701 ---------- ---------- ---------- ---------- --|------- ---------- 8761 --------aa gccaa-uag( -aaacau--- )cuaua-agc -cgcagaaua ucug------ 8821 ---------- ---------- ---------- ---------- ---------- --------ac 8881 c|---aaaaa UGAUC-cgac c--------- ---------- ---(------ ---------- 8941 ---------- ---------- ---------- ---------- -------cca ga)--|--gg 9001 ucgAUCAAC- |GGA-CCAAG UUACCC|UAG G|GAUAACAG |C-GCA-A-U CCCCUCCCAG 9061 AG(U--CCAU )AUCGACGAG --GGGGUUUA CG-ACCUCGA UGUU|GG--A U|C|AGGAC| 9121 AU-CC-UAAU GG-UG(--CA -GC)CGCUAU UAAG-GGU|U CGUU(UGUUC )AACGA-UUA 9181 A--AGUCCU- --ACGUGAUC UGAGUUCAGA CC|GG-A(GU AA)UCCAGGU CAGUUUCUAU 9241 CU|GUA---- --|-|<---- ---------- ---------- ---------- -----acgc- 9301 >--------- ---------- -uA-CUU-UU CC--(UAGU- AC(-GAAA)G GAUU-)GGAA 9361 A--AG-- ggggccc-au gc-------- 9421 -|-------- (-----) 9541 ---------- ---------- gcac-gcccc gcc------- ---------- -------cca 9601 ---------- ---aauuaau (gaaaac--a aauaa)a-uu -aa-guaaag g--------- 9661 ---------- ---------| ------(--- )--------- -------|gu 9961 uc-(aagaua a--)-ggaca ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10021 ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~~~ 10141 ~~~~~~~~~~ ~~~~~~~~~~ ~)~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10201 ~~~~~~~~~~ ~|~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10321 ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ||||| // LOCUS mt.G.robus 10775 bp RNA RNA 02-JUN-1998 DEFINITION Mitochondrion Gila robusta.; . ACCESSION AF0384 1 KEYWORDS . SOURCE Mitochondrion Gila robusta. ORGANISM Mitochondrion Gila robusta. REFERENCE 1 (bases 1 to 2718) AUTHORS Simons,A.M. and Mayden,R.L. TITLE Phoxinins (Actinopterygii: Cyprinidae) as Inferred from Mitochondrial 12S and 16S Ribosomal RNA Sequences Phylogenetic Relationships of the Western North American JOURNAL Mol. Phylogenet. Evol. (1998) In press STANDARD No information REFERENCE 2 (bases 1 to 2718) AUTHORS Simons,A.M. and Mayden,R.L. TITLE Direct Submission JOURNAL Submitted (15-DEC-1997) Department of Biological Sciences, The University of Alabama, Box 870344, Tuscaloosa, AL 35487-0344, USA STANDARD No information COMMENTS Sequence information (bases 1 to 10775) Corresponding GenBank entry: AF038481 BASE COUNT 594 a 376 c 368 g 373 t 9064 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~ug caaauugggu cg-cccugaG C--------- ----caaaca 301 |gcu--agc| uu-------- -|-------- ---------- ---------| -----(---- 361 ---------) -|-------- -------|-- -------(-- ---------- ---------- 421 -------)-- ---------- ---------- ---------- ---------- -----(---- 481 )---|----- --(-----)- ---------- ---------- ---------- -(------)- 541 ---------- ---------- ---- ---------- |------agc 841 uAA(ACCA)U UUU------- ---------- ---------- ---------- --------uu 901 ------(--- --)------- |uac-cuaA- -GUAC-G(-G GAGA)CGGAA -aaggu---- 961 -------<-- --ucaacac- ---------- ---------- ---------- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- --->------ 1201 ---------- ---------- ---------- ---------< ---------- ---------- 1261 ---------- ---------- ---------> (------)-- ---------- ---|-(---) 1321 -------(-- -----)---- ---------- ---------- ---------- --<------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- >--------- ------(--- ---------- 1561 -------)-- ---------- ---------- -(-------) ---------- ---------- 1621 ---------- --AAAGCAAU AGAG-AA--- ---AGUACC( -GCAA-)GG- ---AAA-GC- 1681 ugaaagagaa gugaaacaac ccaua----- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- -----uaa-G C-AGAA ACAAAG---- --------<- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------> (--acuaaac 2041 --)------- -----CUU-G UACCUU(UU- GCAUC)AUGA |UUU-AGCCA GCacc--cu- 2101 caagcaaag- ---------- -------(-- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- -)-------- ---------- 2521 ----(----- )-----<--- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- agac->---- --(------) ---------- ---------- -cuuuaguuu 2701 gaa-acCCCG AA-ACCAA-G UG-AGCUACC CCG-AGA-CA GCCU------ ---------- 2761 -(-------- ---------- ---------- --------au auu-auuua) ---------- 2821 -GGGCUAA-C CC-GUCUCU( GUGGCAA-A) AGAG-UGGGA --AGAGCUC- CGGGUAG-AA 2881 GU(G-ACAG) ACC-UACC-G A-ACCUGGUG AUAGCU-GGU UGUCU--GAG AA-GUG-GAU 2941 (-AGAA)GUU CA-GC-CUCA UACA<----- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ------->-- ---|------ 3061 -|------|- ---------- ---------- --------(- --------)< ccccaaauca 3121 a--------- -cau--auaa auuauua--- ---------- ---------- ---------- 3181 ----agauau uaagggagau a--------- ---------- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---->----- ---------- 3301 ---------- ---------- ----|----- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- -------u-a -uGAG-AGUU AGUUG--AA- AG-GG(-GUA 3481 CAG)CCCUUU UA-AC----- -aAAGG(AUA -CAA)CCU-u uacag-g-ag -aa-UAA--- 3541 --agaucaua auauaua-a- gacaua---- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ------cugu u<-------- ---------- ---------- 3721 ---------- ---------- ---------- ---------- -->UUAGU-G GGC(CUAAAA 3781 GC-A)-GCCA -cCUA|A(A- UA)-|GAAAG C(--GUUAAA )GC|-uCaa- acag--<--- 3841 --aaagaggu uuauuauacc gauaaaaga- ---------- ---------- ---------- 3901 ->-------- -------|-- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- ---------- 4021 ---------- ---------- ---------- ---------- ---------- ---------- 4081 -------|uc uuau--uuc| c--c-ua|-- ---------- ---------- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- ---------- ---------- ---------- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- -----guuau auCAG-AU|- CA-ACCCAUG ---------- 4501 ---------- ---------- (ccaa---)< ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ------->-- ---------- ---------| CAUGGAAGAG AUUAUGC-UA 4681 GA|AUGAGUA -ACAA-GAA- ga-------- (-ccugcacu ---------- ---------- 4741 ---------- -----)---- ---uc-|ucc ----uu-GCA CAA--gugua a|----acca 4801 gauc----gg ---------- ----(--aca ag)c-c|--a cuggaa---- ---------- 4861 ---cuuaa-- -cga------ ---------- -------(-- ---------- ------)<-- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 >--------- ---------- ---------- ----(----- ---------- ---------- 5041 ---------- ---------- ----)----- |-----|--- ---------- |--<------ 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ---------- ---------- 5221 ---------- ---------- ---------- ---------- ---------- ---------- 5281 ---------- ---------- ---------- ---------- ---------- ---------- 5341 ---------- ---------- ---------- ---------- ---------- ---------- 5401 ---------- ---------- ------->-- ---------- ---------- ---------- 5461 -----(---- ------)--- ---|------ --------|- ---------- -(-----)-- 5521 |--------- ---------- ---------- -----(---- )--------- ---------- 5581 --<------- ---------- ---------- ---------- ---------- ---------- 5641 ---------- ---------- ------->-- ---------- ---------- ---<------ 5701 ---------- acccaaccca agaggguaau gug-aacaac aaaaauauca ggaagaauuc 5761 acaauuaaaa uaa------- ---------- ---------- ---------- ---------- 5821 ---------- ---------- ---------- ---------- ---------- ---------- 5881 ---------- ---------- ---------- ---------- ---------- ---------- 5941 ---------- ---------- ---------- ---------- ---------- ---------- 6001 ---------- ---------- ---------- ---------- ---------- ---------- 6061 ---------- ---------- ---------- ---------- ---------- ---------- 6121 ---------- ---------- ---------- ---------- ---------- ---------- 6181 ---------- ---------- ---------- ---------- ---------- ---------- 6241 ---------- ---------- ---------- ---------- ---------- ---------- 6301 ---------- ---------- ---------- ---------- ---------- ---------- 6361 ---------- ---------- ---------- ---------- ---------- ---------- 6421 ---------- ---------- ------>--- ---------- ---------- --ucgu-|-- 6481 ---UAACCC- -(CACACU)G G|AGUGC--- ----(uauuu uauaga)--- -----ggaa| 6541 |---AGAC-U A--AAGGGUG -GGAA-AGGA ACUCGGCAAA ---------- ---------- 6601 ---------- ---------- ---------- ---------- ---------- ---------- 6661 ---------- ---------- ---------- ---------- ---------- ---------- 6721 ---------- ---------- ---------- ---------- ---------- ---------- 6781 ------(--- )--------c acAAGCCU|C GC---CUG-U UU(ACCAA)A AA-CAUC-GC 6841 CUCCUG|C-- ---------- ---------- (aacuagauu ga----)--- ---------- 6901 ------GUA- UAG-GAGGUC CAGCCU<--- ---------- ---------- ---------- 6961 ---------- ---------- -------->G CC-CA-GU|G AC-------- ---------- 7021 ---------- --(------- ---------- ---------- ---------- ---------- 7081 ---------- ---------- --------ua cgg)------ ---------- ---------| 7141 ---GUUC-AA C-|GG-C|-C -GCGGU-(AU -UUUG)ACCG UG|C(AAA)- GG-UAGCGCA 7201 AUC-AC-U-U |GUCUCU(-U AAAU-)AGAG AC|CU-GUAU GAAUGGCUAG A-CGAGGGCU 7261 UA-------- ---------- -------ACU GUCUCCCCCA CCAA-GU-CA ----GUGAAA 7321 UU|G|AUCUA UC-CG(U-GC AGAAG)CGGG UAU----GAC UAUACAAGAC GAGAAG-ACC 7381 CUUUGG-|-A GCUUA--AGG UA|-ca-agu uua--c---| <--------- ---------- 7441 ---------- ---------- --->------ ---------- ---------- ---------- 7501 ---------- ---------- ---------- --<------- ------ccac guuaa-acaa 7561 cu-ccauaaa aagugagaac uuaguggcaa a--------- ---------- ---------- 7621 ---------- ---------- ---------> --(------- -)-------- ---------- 7681 ---------- -------|-- ---------- ---------- ---------- ---------- 7741 -----(---- ----)----- ---------- ---------- ---------- --------<- 7801 ---------- ---------- ---------- ---------- ---------- ---------- 7861 ---------- ---------- ---------- ---------- ---------- ---------- 7921 ---------- ---------- ---------- ---------- ---------- ---------- 7981 ---------- ---------- ---------- ---------- ---------- ---------- 8041 ---------- ---------- ---------- ---------- ---------- ---------- 8101 ---------- ---------- ----->---- ----u-aaaa uuuu--U-AC CUUCGGUUG( 8161 GGG)CG-AC- C|GCGGAG(- --------GA AAAACAAGC- )CUCC-GA|G |u|gg---|< 8221 ---------- ---------- ---------- ---------- ---------- ---------- 8281 ---------- ---------- ---------- ---------- ---------- ------accg 8341 ggguagac-- cccua----- ---------- ---------- ---------- ->-------- 8401 ---------- ---------- ---------- ---------- ---------- ---------- 8461 ---------- ---------- ---------- ---------- ---------- ---------- 8521 ---------- ---------- ---------- ---------- ---------- ---------- 8581 ---------- ---------- ---------- ---------- ---------- ---------- 8641 ---------- ---------- ---------- ---------- ---------- ---------- 8701 ---------- ---------- ---------- ---------- --|------- ---------- 8761 --------aa gccaa-uag( -aaacau--- )cuaua-agc -cgcagaaua ucug------ 8821 ---------- ---------- ---------- ---------- ---------- --------ac 8881 c|---aagaa UGAUC-cgac c--------- ---------- ---(------ ---------- 8941 ---------- ---------- ---------- ---------- -------cca ga)--|--gg 9001 ucgAUCAAC- |GAA-CCAAG UUACCC|UAG G|GAUAACAG |C-GCA-A-U CCCCUCCCAG 9061 AG(U--CCAU )AUCGACGAG --GGGGUUUA CG-ACCUCGA UGUU|GG--A U|C|AGGAC| 9121 AU-CC-UAAU GG-UG(--CA -GC)CGCUAU UAAG-GGU|U CGUU(UGUUC )AACGA-UUA 9181 A--AGUCCU- --ACGUGAUC UGAGUUCAGA CC|GG-A(GU AA)UCCAGGU CAGUUUCUAU 9241 CU|GUA---- --|-|<---- ---------- ---------- ---------- -----acgc- 9301 >--------- ---------- -uA-CUU-UU CC--(UAGU- AC(-GAAA)G GAUU-)GGAA 9361 A--AG-- ggggccc-au ac-------- 9421 -|-------- (-----) 9541 ---------- ---------- gcac-gcccc gcc------- ---------- -------cca 9601 ---------- ---aauuaau (gaaaac--a aauaa)a-uu -aa-guaaag g--------- 9661 ---------- ---------| ------(--- )--------- -------|gu 9961 uc-(aagaua a--)-ggaca ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10021 ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~~~ 10141 ~~~~~~~~~~ ~~~~~~~~~~ ~)~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10201 ~~~~~~~~~~ ~|~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10321 ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ||||| // LOCUS mt.L.exi.1 10775 bp RNA RNA 02-JUN-1998 DEFINITION Mitochondrion Lavinia exilicauda.; . ACCESSION AF0384 2 KEYWORDS . SOURCE Mitochondrion Lavinia exilicauda. ORGANISM Mitochondrion Lavinia exilicauda. REFERENCE 1 (bases 1 to 2716) AUTHORS Simons,A.M. and Mayden,R.L. TITLE Phoxinins (Actinopterygii: Cyprinidae) as Inferred from Mitochondrial 12S and 16S Ribosomal RNA Sequences Phylogenetic Relationships of the Western North American JOURNAL Mol. Phylogenet. Evol. (1998) In press STANDARD No information REFERENCE 2 (bases 1 to 2716) AUTHORS Simons,A.M. and Mayden,R.L. TITLE Direct Submission JOURNAL Submitted (15-DEC-1997) Department of Biological Sciences, The University of Alabama, Box 870344, Tuscaloosa, AL 35487-0344, USA STANDARD No information COMMENTS Sequence information (bases 1 to 10775) Corresponding GenBank entry: AF038482 BASE COUNT 598 a 380 c 360 g 371 t 9066 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~ug caaauuggau ca-cccugaG C--------- ----caaaca 301 |gcu--agc| uu-------- -|-------- ---------- ---------| -----(---- 361 ---------) -|-------- -------|-- -------(-- ---------- ---------- 421 -------)-- ---------- ---------- ---------- ---------- -----(---- 481 )---|----- --(-----)- ---------- ---------- ---------- -(------)- 541 ---------- ---------- ---- ---------- |------aau 841 uAA(ACCA)U UUU------- ---------- ---------- ---------- --------uu 901 ------(--- --)------- |uac-cuaA- -GUAC-G(-G GAGA)CGGAA -aaggu---- 961 -------<-- --ccaacau- ---------- ---------- ---------- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- --->------ 1201 ---------- ---------- ---------- ---------< ---------- ---------- 1261 ---------- ---------- ---------> (------)-- ---------- ---|-(---) 1321 -------(-- -----)---- ---------- ---------- ---------- --<------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- >--------- ------(--- ---------- 1561 -------)-- ---------- ---------- -(-------) ---------- ---------- 1621 ---------- --AAAGCGAU AGAG-AA--- ---AGUACC( -GCAA-)GG- ---AAA-GC- 1681 ugaaagagaa augaaauaac ccaua----- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- -----uaa-G C-AGAA ACAAAG---- --------<- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------> (--acuaaac 2041 --)------- -----CUU-G UACCUU(UU- GCAUC)AUGA |UUU-AGCCA GCacc--cu- 2101 caagcaaag- ---------- -------(-- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- -)-------- ---------- 2521 ----(----- )-----<--- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- agac->---- --(------) ---------- ---------- -cuuuaguuu 2701 gaa-gcCCCG AA-ACCAG-G UG-AGCUACC CCG-AGA-CA GCCU------ ---------- 2761 -(-------- ---------- ---------- --------au auu-auuua) ---------- 2821 -GGGCUAA-C CC-GUCUCU( GUGGCAA-A) AGAG-UGGGA --AGAGCUC- CGGGUAG-AA 2881 GU(G-ACAG) ACC-UACC-G A-ACCUGGUG AUAGCU-GGU UGUCU--GAG AA-GUG-GAU 2941 (-AGAA)GUU CA-GC-CUCA UGCA<----- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ------->-- ---|------ 3061 -|------|- ---------- ---------- --------(- --------)< ccccaaauc- 3121 --g------- acau--auac auuauua--- ---------- ---------- ---------- 3181 ----agauac uaagggaaau a--------- ---------- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---->----- ---------- 3301 ---------- ---------- ----|----- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- -------u-a -uGAG-AGUU AGUUA--AA- AG-GG(-GUA 3481 CAG)CCCUUU UA-AC----- -aAAGG(AUA -CAA)CCU-u uacag-g-ag -ga-UAA--- 3541 --agaucaua auauaua-a- aacaua---- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ------cugu u<-------- ---------- ---------- 3721 ---------- ---------- ---------- ---------- -->UUAGU-G GGC(CUAAAA 3781 GC-A)-GCCA -cCUA|A(A- UA)-|GAAAG C(--GUUAAA )GC|-uCag- acag--<--- 3841 --aaagaagu uuauuauauc gauaaaaaa- ---------- ---------- ---------- 3901 ->-------- -------|-- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- ---------- 4021 ---------- ---------- ---------- ---------- ---------- ---------- 4081 -------|uc uuau--ucc| c--c-ua|-- ---------- ---------- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- ---------- ---------- ---------- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- -----auuau auCAG-AC|- CA-ACCCAUG ---------- 4501 ---------- ---------- (ccca---)< ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ------->-- ---------- ---------| CAUGGGAGAG AUUAUGC-UA 4681 AA|AUGAGUA -ACAA-GAA- ga-------- (-ccugcgcu ---------- ---------- 4741 ---------- -----)---- ---uc-|ucc ----uu-GCA CAA--gugua a|----acca 4801 gauc----gg ---------- ----(--aca aa)c-c|--a cuggaa---- ---------- 4861 ---cuuaa-- -cga------ ---------- -------(-- ---------- ------)<-- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 >--------- ---------- ---------- ----(----- ---------- ---------- 5041 ---------- ---------- ----)----- |-----|--- ---------- |--<------ 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ---------- ---------- 5221 ---------- ---------- ---------- ---------- ---------- ---------- 5281 ---------- ---------- ---------- ---------- ---------- ---------- 5341 ---------- ---------- ---------- ---------- ---------- ---------- 5401 ---------- ---------- ------->-- ---------- ---------- ---------- 5461 -----(---- ------)--- ---|------ --------|- ---------- -(-----)-- 5521 |--------- ---------- ---------- -----(---- )--------- ---------- 5581 --<------- ---------- ---------- ---------- ---------- ---------- 5641 ---------- ---------- ------->-- ---------- ---------- ---<------ 5701 ---------- acccaaccca agagggcaau gug-agcaac aauagaccuc aagaagaacu 5761 cacagucaua auaa------ ---------- ---------- ---------- ---------- 5821 ---------- ---------- ---------- ---------- ---------- ---------- 5881 ---------- ---------- ---------- ---------- ---------- ---------- 5941 ---------- ---------- ---------- ---------- ---------- ---------- 6001 ---------- ---------- ---------- ---------- ---------- ---------- 6061 ---------- ---------- ---------- ---------- ---------- ---------- 6121 ---------- ---------- ---------- ---------- ---------- ---------- 6181 ---------- ---------- ---------- ---------- ---------- ---------- 6241 ---------- ---------- ---------- ---------- ---------- ---------- 6301 ---------- ---------- ---------- ---------- ---------- ---------- 6361 ---------- ---------- ---------- ---------- ---------- ---------- 6421 ---------- ---------- ------>--- ---------- ---------- --ucgu-|-- 6481 ---UAACCC- -(CACACU)G G|AGUGC--- ----(cauuu auaaa-)--- -----ggaa| 6541 |---AGAC-U A--AAAGAUA -GGGA-AGGA ACUCGGCAAA ---------- ---------- 6601 ---------- ---------- ---------- ---------- ---------- ---------- 6661 ---------- ---------- ---------- ---------- ---------- ---------- 6721 ---------- ---------- ---------- ---------- ---------- ---------- 6781 ------(--- )--------c acAAGCCU|C GC---CUG-U UU(ACCAA)A AA-CAUC-GC 6841 CUCCUG|C-- ---------- ---------- (aacuagauu ga----)--- ---------- 6901 ------GUA- UAG-GAGGUC CAGCCU<--- ---------- ---------- ---------- 6961 ---------- ---------- -------->G CC-CA-GU|G AC-------- ---------- 7021 ---------- --(------- ---------- ---------- ---------- ---------- 7081 ---------- ---------- --------ua cgg)------ ---------- ---------| 7141 ---GUUC-AA C-|GG-C|-C -GCGGU-(AU -UUUG)ACCG UG|C(AAA)- GG-UAGCGCA 7201 AUC-AC-U-U |GUCUCU(-U AAAU-)AGAG AC|CU-GUAU GAAUGGCUAG A-CGAGGGCU 7261 UA-------- ---------- -------ACU GUCUCCCCUA UCAA-GU-CA ----GUGAAA 7321 UU|G|AUCUA UC-CG(U-GC AGAAG)CGGG UAU----AUU UAUACAAGAC GAGAAG-ACC 7381 CUUUGG-|-A GCUUA--AGG UA|-ca-aau cua--c---| <--------- ---------- 7441 ---------- ---------- --->------ ---------- ---------- ---------- 7501 ---------- ---------- ---------- --<------- ------ccac guuaa-acaa 7561 cu-cuauaaa aaguaagaac uuaguggcga a--------- ---------- ---------- 7621 ---------- ---------- ---------> --(------- -)-------- ---------- 7681 ---------- -------|-- ---------- ---------- ---------- ---------- 7741 -----(---- ----)----- ---------- ---------- ---------- --------<- 7801 ---------- ---------- ---------- ---------- ---------- ---------- 7861 ---------- ---------- ---------- ---------- ---------- ---------- 7921 ---------- ---------- ---------- ---------- ---------- ---------- 7981 ---------- ---------- ---------- ---------- ---------- ---------- 8041 ---------- ---------- ---------- ---------- ---------- ---------- 8101 ---------- ---------- ----->---- ----u-agaa uuu---U-AC CUUCGGUUG( 8161 GGG)CG-AC- C|ACGGAG(- --------GA GAAACAAGC- )CUCC-GA|G |u|gg---|< 8221 ---------- ---------- ---------- ---------- ---------- ---------- 8281 ---------- ---------- ---------- ---------- ---------- ------acug 8341 ggccaa-a-- gccua----- ---------- ---------- ---------- ->-------- 8401 ---------- ---------- ---------- ---------- ---------- ---------- 8461 ---------- ---------- ---------- ---------- ---------- ---------- 8521 ---------- ---------- ---------- ---------- ---------- ---------- 8581 ---------- ---------- ---------- ---------- ---------- ---------- 8641 ---------- ---------- ---------- ---------- ---------- ---------- 8701 ---------- ---------- ---------- ---------- --|------- ---------- 8761 --------aa gcuaa-uag( -aaacau--- )cuaua-agc -cgcagaaua ucug------ 8821 ---------- ---------- ---------- ---------- ---------- --------ac 8881 c|---aaaaa UGAUC-cgac c--------- ---------- ---(------ ---------- 8941 ---------- ---------- ---------- ---------- -------aca gc)--|--gg 9001 ucgAUCAAC- |GAA-CCAAG UUACCC|UAG G|GAUAACAG |C-GCA-A-U CCCCUCCCAG 9061 AG(U--CCAU )AUCGACGAG --GGGGUUUA CG-ACCUCGA UGUU|GG--A U|C|AGGAC| 9121 AU-CC-UAAU GG-UG(--CA -GC)CGCUAU UAAG-GGU|U CGUU(UGUUC )AACGA-UUA 9181 A--AGUCCU- --ACGUGAUC UGAGUUCAGA CC|GG-A(GC AA)UCCAGGU CAGUUUCUAU 9241 CU|GUA---- --|-|<---- ---------- ---------- ---------- -----acgc- 9301 >--------- ---------- -uA-CUU-UU CC--(UAGU- AC(-GAAA)G GAUU-)GGAA 9361 A--AG-- ggggccu-au ac-------- 9421 -|-------- (-----) 9541 ---------- ---------- gcac-gcccc gcc------- ---------- -------cca 9601 ---------- ---aauuaau (gaaaac--a aauaa)a-uu -aa-guaaag g--------- 9661 ---------- -------<-- ----gaggg- ---------- ---------- ---------- 9721 ---------- ---------- ---------- ---------- ---------- ---------- 9781 ---------- ---------- ---------- ---------- ---------- ---------- 9841 ---------- ---------- ---------- ---------- ---------- ---------- 9901 -------cca aaaccccugc c----->--| ------(--- )--------- -------|gu 9961 uc-(aagaua a--)-ggaca ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10021 ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~~~ 10141 ~~~~~~~~~~ ~~~~~~~~~~ ~)~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10201 ~~~~~~~~~~ ~|~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10321 ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ||||| // LOCUS mt.L.exi.2 10775 bp RNA RNA 02-JUN-1998 DEFINITION Mitochondrion Lavinia exilicauda.; . ACCESSION AF0384 3 KEYWORDS . SOURCE Mitochondrion Lavinia exilicauda. ORGANISM Mitochondrion Lavinia exilicauda. REFERENCE 1 (bases 1 to 2717) AUTHORS Simons,A.M. and Mayden,R.L. TITLE Phylogenetic Relationships of the Western North American Phoxinins (Actinopterygii: Cyprinidae) as Inferred from Mitochondrial 12S and 16S Ribosomal RNA Sequences JOURNAL Mol. Phylogenet. Evol. (1998) In press STANDARD No information REFERENCE 2 (bases 1 to 2717) AUTHORS Simons,A.M. and Mayden,R.L. TITLE Direct Submission JOURNAL Submitted (15-DEC-1997) Department of Biological Sciences, The University of Alabama, Box 870344, Tuscaloosa, AL 35487-0344, USA STANDARD No information COMMENTS Sequence information (bases 1 to 10775) Corresponding GenBank entry: AF038483 BASE COUNT 598 a 381 c 360 g 371 t 9065 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~ug caaauuggau ca-cccugaG C--------- ----caaaca 301 |gcu--agc| uu-------- -|-------- ---------- ---------| -----(---- 361 ---------) -|-------- -------|-- -------(-- ---------- ---------- 421 -------)-- ---------- ---------- ---------- ---------- -----(---- 481 )---|----- --(-----)- ---------- ---------- ---------- -(------)- 541 ---------- ---------- ---- ---------- |------aau 841 uAA(ACCA)U UUU------- ---------- ---------- ---------- --------uu 901 ------(--- --)------- |uac-cuaA- -GUAC-G(-G GAGA)CGGAA -aaggu---- 961 -------<-- --ccaacgu- ---------- ---------- ---------- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- --->------ 1201 ---------- ---------- ---------- ---------< ---------- ---------- 1261 ---------- ---------- ---------> (------)-- ---------- ---|-(---) 1321 -------(-- -----)---- ---------- ---------- ---------- --<------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- >--------- ------(--- ---------- 1561 -------)-- ---------- ---------- -(-------) ---------- ---------- 1621 ---------- --AAAGCGAU AGAG-AA--- ---AGUACC( -GCAA-)GG- ---AAA-GC- 1681 ugaaagagaa augaaauaac ccaua----- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- -----uaa-G C-AGAA ACAAAG---- --------<- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------> (--acuaaac 2041 --)------- -----CUU-G UACCUU(UU- GCAUC)AUGA |UUU-AGCCA GCacc--cu- 2101 caagcaaag- ---------- -------(-- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- -)-------- ---------- 2521 ----(----- )-----<--- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- agac->---- --(------) ---------- ---------- -cuuuaguuu 2701 gaa-gcCCCG AA-ACCAG-G UG-AGCUACC CCG-AGA-CA GCCU------ ---------- 2761 -(-------- ---------- ---------- --------au auu-auuua) ---------- 2821 -GGGCUAA-C CC-GUCUCU( GUGGCAA-A) AGAG-UGGGA --AGAGCUC- CGGGUAG-AA 2881 GU(G-ACAG) ACC-UACC-G A-ACCUGGUG AUAGCU-GGU UGUCU--GAG AA-GUG-GAU 2941 (-AGAA)GUU CA-GC-CUCA UGCA<----- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ------->-- ---|------ 3061 -|------|- ---------- ---------- --------(- --------)< ccccaaauc- 3121 --g------- acau--auac auuauua--- ---------- ---------- ---------- 3181 ----agauac uaagggaaau a--------- ---------- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---->----- ---------- 3301 ---------- ---------- ----|----- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- -------u-a -uGAG-AGUU AGUUA--AA- AG-GG(-GUA 3481 CAG)CCCUUU UA-AC----- -aAAGG(AUA -CAA)CCU-u uacag-g-ag -ga-UAA--- 3541 --agaucaua auauaua-a- aacaua---- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ------cugu u<-------- ---------- ---------- 3721 ---------- ---------- ---------- ---------- -->UUAGU-G GGC(CUAAAA 3781 GC-A)-GCCA -cCUA|A(A- UA)-|GAAAG C(--GUUAAA )GC|-uCag- acag--<--- 3841 --aaagaagu uuauuauauc aauaaaaaa- ---------- ---------- ---------- 3901 ->-------- -------|-- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- ---------- 4021 ---------- ---------- ---------- ---------- ---------- ---------- 4081 -------|uc uuau--ucc| c--c-ua|-- ---------- ---------- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- ---------- ---------- ---------- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- -----auuau auCAg-AC|- CA-ACCCAUG ---------- 4501 ---------- ---------- (ccca---)< ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ------->-- ---------- ---------| CAUGGGAGAG AUUAUGC-UA 4681 AA|AUGAGUA -ACAA-GAA- ga-------- (-ccugcgcu ---------- ---------- 4741 ---------- -----)---- ---uc-|ucc ----uu-GCA CAA--gugua a|----acca 4801 gauc----gg ---------- ----(--aca aa)c-c|--a cuggaa---- ---------- 4861 ---cuuaa-- -cga------ ---------- -------(-- ---------- ------)<-- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 >--------- ---------- ---------- ----(----- ---------- ---------- 5041 ---------- ---------- ----)----- |-----|--- ---------- |--<------ 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ---------- ---------- 5221 ---------- ---------- ---------- ---------- ---------- ---------- 5281 ---------- ---------- ---------- ---------- ---------- ---------- 5341 ---------- ---------- ---------- ---------- ---------- ---------- 5401 ---------- ---------- ------->-- ---------- ---------- ---------- 5461 -----(---- ------)--- ---|------ --------|- ---------- -(-----)-- 5521 |--------- ---------- ---------- -----(---- )--------- ---------- 5581 --<------- ---------- ---------- ---------- ---------- ---------- 5641 ---------- ---------- ------->-- ---------- ---------- ---<------ 5701 ---------- acccaaccca agagggcaau gug-agcaac aauagaccuc aagaagaacu 5761 cacagucaua auaa------ ---------- ---------- ---------- ---------- 5821 ---------- ---------- ---------- ---------- ---------- ---------- 5881 ---------- ---------- ---------- ---------- ---------- ---------- 5941 ---------- ---------- ---------- ---------- ---------- ---------- 6001 ---------- ---------- ---------- ---------- ---------- ---------- 6061 ---------- ---------- ---------- ---------- ---------- ---------- 6121 ---------- ---------- ---------- ---------- ---------- ---------- 6181 ---------- ---------- ---------- ---------- ---------- ---------- 6241 ---------- ---------- ---------- ---------- ---------- ---------- 6301 ---------- ---------- ---------- ---------- ---------- ---------- 6361 ---------- ---------- ---------- ---------- ---------- ---------- 6421 ---------- ---------- ------>--- ---------- ---------- --ucgu-|-- 6481 ---UAACCC- -(CACACU)G G|AGUGC--- ----(cauuu auaaa-)--- -----ggaa| 6541 |---AGAC-U A--AAAGAUA -GGGA-AGGA ACUCGGCAAA ---------- ---------- 6601 ---------- ---------- ---------- ---------- ---------- ---------- 6661 ---------- ---------- ---------- ---------- ---------- ---------- 6721 ---------- ---------- ---------- ---------- ---------- ---------- 6781 ------(--- )--------c acAAGCCU|C GC---CUG-U UU(ACCAA)A AA-CAUC-GC 6841 CUCCUG|C-- ---------- ---------- (aacuagauu ga----)--- ---------- 6901 ------GUA- UAG-GAGGUC CAGCCU<--- ---------- ---------- ---------- 6961 ---------- ---------- -------->G CC-CA-GU|G AC-------- ---------- 7021 ---------- --(------- ---------- ---------- ---------- ---------- 7081 ---------- ---------- --------ua cgg)------ ---------- ---------| 7141 ---GUUC-AA C-|GG-C|-C -GCGGU-(AU -UUUG)ACCG UG|C(AAA)- GG-UAGCGCA 7201 AUC-AC-U-U |GUCUCU(-U AAAU-)AGAG AC|CU-GUAU GAAUGGCUAG A-CGAGGGCU 7261 UA-------- ---------- -------ACU GUCUCCCCUA UCAA-GU-CA ----GUGAAA 7321 UU|G|AUCUA CC-CG(U-GC AGAAG)CGGG UAU----AUU UAUACAAGAC GAGAAG-ACC 7381 CUUUGG-|-A GCUUA--AGG UA|-ca-aau cua--c---| <--------- ---------- 7441 ---------- ---------- --->------ ---------- ---------- ---------- 7501 ---------- ---------- ---------- --<------- ------ccac guuaa-acaa 7561 cu-cuauaaa aaguaagaac uuaguggcga a--------- ---------- ---------- 7621 ---------- ---------- ---------> --(------- -)-------- ---------- 7681 ---------- -------|-- ---------- ---------- ---------- ---------- 7741 -----(---- ----)----- ---------- ---------- ---------- --------<- 7801 ---------- ---------- ---------- ---------- ---------- ---------- 7861 ---------- ---------- ---------- ---------- ---------- ---------- 7921 ---------- ---------- ---------- ---------- ---------- ---------- 7981 ---------- ---------- ---------- ---------- ---------- ---------- 8041 ---------- ---------- ---------- ---------- ---------- ---------- 8101 ---------- ---------- ----->---- ----u-agaa uuu---U-AC CUUCGGUUG( 8161 GGG)CG-AC- C|ACGGAG(- --------GA GAAACAAGC- )CUCC-GA|G |u|gg---|< 8221 ---------- ---------- ---------- ---------- ---------- ---------- 8281 ---------- ---------- ---------- ---------- ---------- ------acug 8341 ggccaa-a-- gccua----- ---------- ---------- ---------- ->-------- 8401 ---------- ---------- ---------- ---------- ---------- ---------- 8461 ---------- ---------- ---------- ---------- ---------- ---------- 8521 ---------- ---------- ---------- ---------- ---------- ---------- 8581 ---------- ---------- ---------- ---------- ---------- ---------- 8641 ---------- ---------- ---------- ---------- ---------- ---------- 8701 ---------- ---------- ---------- ---------- --|------- ---------- 8761 --------aa gcuaa-uag( -aaacau--- )cuaua-agc -cgcagaaua ucug------ 8821 ---------- ---------- ---------- ---------- ---------- --------ac 8881 c|---aaaaa UGAUC-cgac c--------- ---------- ---(------ ---------- 8941 ---------- ---------- ---------- ---------- -------aca gc)--|--gg 9001 ucgAUCAAC- |GAA-CCAAG UUACCC|UAG G|GAUAACAG |C-GCA-A-U CCCCUCCCAG 9061 AG(U--CCAU )AUCGACGAG --GGGGUUUA CG-ACCUCGA UGUU|GG--A U|C|AGGAC| 9121 AU-CC-UAAU GG-UG(--CA -GC)CGCUAU UAAG-GGU|U CGUU(UGUUC )AACGA-UUA 9181 A--AGUCCU- --ACGUGAUC UGAGUUCAGA CC|GG-A(GC AA)UCCAGGU CAGUUUCUAU 9241 CU|GUA---- --|-|<---- ---------- ---------- ---------- -----acgc- 9301 >--------- ---------- -uA-CUU-UU CC--(UAGU- AC(-GAAA)G GAUU-)GGAA 9361 A--AG-- ggggccu-au ac-------- 9421 -|-------- (-----) 9541 ---------- ---------- gcac-gcccc gcc------- ---------- -------cca 9601 ---------- ---aauuaau (gaaaac--a aauaa)a-uu -aa-guaaag g--------- 9661 ---------- -------<-- ----gaggg- ---------- ---------- ---------- 9721 ---------- ---------- ---------- ---------- ---------- ---------- 9781 ---------- ---------- ---------- ---------- ---------- ---------- 9841 ---------- ---------- ---------- ---------- ---------- ---------- 9901 -------cca aaaccccugc c----->--| ------(--- )--------- -------|gu 9961 uc-(aagaua a--)-ggaca ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10021 ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~~~ 10141 ~~~~~~~~~~ ~~~~~~~~~~ ~)~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10201 ~~~~~~~~~~ ~|~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10321 ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ||||| // LOCUS mt.L.rutil 10775 bp RNA RNA 02-JUN-1998 DEFINITION Mitochondrion Leuciscus rutilus.; . ACCESSION AF0384 4 KEYWORDS . SOURCE Mitochondrion Leuciscus rutilus. ORGANISM Mitochondrion Leuciscus rutilus. REFERENCE 1 (bases 1 to 2717) AUTHORS Simons,A.M. and Mayden,R.L. TITLE Phylogenetic Relationships of the Western North American Phoxinins (Actinopterygii: Cyprinidae) as Inferred from Mitochondrial 12S and 16S Ribosomal RNA Sequences JOURNAL Mol. Phylogenet. Evol. (1998) In press STANDARD No information REFERENCE 2 (bases 1 to 2717) AUTHORS Simons,A.M. and Mayden,R.L. TITLE Direct Submission JOURNAL Submitted (15-DEC-1997) Department of Biological Sciences, The University of Alabama, Box 870344, Tuscaloosa, AL 35487-0344, USA STANDARD No information COMMENTS Sequence information (bases 1 to 10775) Corresponding GenBank entry: AF038484 BASE COUNT 582 a 392 c 370 g 364 t 9067 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~ug uaaauuggau cg-cccugaG C--------- ----caacca 301 |gcu--agc| uu-------- -|-------- ---------- ---------| -----(---- 361 ---------) -|-------- -------|-- -------(-- ---------- ---------- 421 -------)-- ---------- ---------- ---------- ---------- -----(---- 481 )---|----- --(-----)- ---------- ---------- ---------- -(------)- 541 ---------- ---------- ---- ---------- |------aac 841 uAA(ACCA)U UUU------- ---------- ---------- ---------- --------uu 901 ------(--- --)------- |uac-cuaA- -GUAC-G(-G GAGA)CGGAA -aaggu---- 961 -------<-- --ucaaccc- ---------- ---------- ---------- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- --->------ 1201 ---------- ---------- ---------- ---------< ---------- ---------- 1261 ---------- ---------- ---------> (------)-- ---------- ---|-(---) 1321 -------(-- -----)---- ---------- ---------- ---------- --<------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- >--------- ------(--- ---------- 1561 -------)-- ---------- ---------- -(-------) ---------- ---------- 1621 ---------- --AAAGCAAU AGAG-AA--- ---AGUACC( -GCAA-)GG- ---AAA-GC- 1681 ugaaagagaa gugaaacaac ccaua----- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- -----uaa-G C-AAAA ACAAAG---- --------<- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------> (--acuaaac 2041 --)------- -----CUU-G UACCUU(UU- GCAUC)AUGA |UUU-AGCCA GCacc--cu- 2101 caagcaaag- ---------- -------(-- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- -)-------- ---------- 2521 ----(----- )-----<--- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- agac->---- --(------) ---------- ---------- -cuuuaguuu 2701 gaa-acCCCG AA-ACCAG-G UG-AGCUACC CCG-AGA-CA GCCU------ ---------- 2761 -(-------- ---------- ---------- --------au -u-aauuua) ---------- 2821 -GGGCUAA-C CC-GUCUCU( GUGGCAA-A) AGAG-UGGGA --AGAGCUC- CGGGUAG-AA 2881 GU(G-ACAG) ACC-UACC-G A-ACCUGGUG AUAGCU-GGU UGCCU--GAG AA-GUG-GAU 2941 (-AGAA)GUU CA-GC-CUCG UAUA<----- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ------->-- ---|------ 3061 -|------|- ---------- ---------- --------(- --------)< ccccaaacca 3121 aa-------- -g---aauac acuacca--- ---------- ---------- ---------- 3181 ----aggugc ucagggaaau ---------- ---------- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---->----- ---------- 3301 ---------- ---------- ----|----- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ------AC-A -CGAG-AGUU AGUUG--AA- GG-GG(-GUA 3481 CAG)CCCcUU UA-AC----- -aAAGG(AUA -CAA)CCU-u uacag-g-ag -ga-UAA--- 3541 --agaucaua auauaua-a- aacaca---- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ------cugu u<-------- ---------- ---------- 3721 ---------- ---------- ---------- ---------- -->CUAGU-G GGC(CUAAAG 3781 GC-A)-GCCA -cCUA|A(A- CA)-|GAAAG C(--GUUAAA )GC|-UCAg- acag--<--- 3841 --aaagaagu uuauuauacc gauaaaaaa- ---------- ---------- ---------- 3901 ->-------- -------|-- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- ---------- 4021 ---------- ---------- ---------- ---------- ---------- ---------- 4081 -------|uc uuac--ucc| c--c-ua|-- ---------- ---------- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- ---------- ---------- ---------- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- -----auuau auCAG-GC|- CA-ACCCAUG ---------- 4501 ---------- ---------- (ccaa---)< ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ------->-- ---------- ---------| CAUGGAAGAG AUUAUGC-UA 4681 AA|AUGAGUA -ACAA-GAA- ga-------- (-ccugcucu ---------- ---------- 4741 ---------- -----)---- ---uc-|ucc ----ca-GCA CAA--gugua a|----gcca 4801 gauc----gg ---------- ----(--acc aa)c-c|--a cuggaa---- ---------- 4861 ---cuuaa-- -cga------ ---------- -------(-- ---------- ------)<-- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 >--------- ---------- ---------- ----(----- ---------- ---------- 5041 ---------- ---------- ----)----- |-----|--- ---------- |--<------ 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ---------- ---------- 5221 ---------- ---------- ---------- ---------- ---------- ---------- 5281 ---------- ---------- ---------- ---------- ---------- ---------- 5341 ---------- ---------- ---------- ---------- ---------- ---------- 5401 ---------- ---------- ------->-- ---------- ---------- ---------- 5461 -----(---- ------)--- ---|------ --------|- ---------- -(-----)-- 5521 |--------- ---------- ---------- -----(---- )--------- ---------- 5581 --<------- ---------- ---------- ---------- ---------- ---------- 5641 ---------- ---------- ------->-- ---------- ---------- ---<------ 5701 ---------- acccaaccca agaggguaau gugaacaaca uagacuucag gaaggacuca 5761 caa-cuaaau aa-------- ---------- ---------- ---------- ---------- 5821 ---------- ---------- ---------- ---------- ---------- ---------- 5881 ---------- ---------- ---------- ---------- ---------- ---------- 5941 ---------- ---------- ---------- ---------- ---------- ---------- 6001 ---------- ---------- ---------- ---------- ---------- ---------- 6061 ---------- ---------- ---------- ---------- ---------- ---------- 6121 ---------- ---------- ---------- ---------- ---------- ---------- 6181 ---------- ---------- ---------- ---------- ---------- ---------- 6241 ---------- ---------- ---------- ---------- ---------- ---------- 6301 ---------- ---------- ---------- ---------- ---------- ---------- 6361 ---------- ---------- ---------- ---------- ---------- ---------- 6421 ---------- ---------- ------>--- ---------- ---------- --ucgu-|-- 6481 ---UAAUCC- -(CACACU)G G|AGUGC--- ----(uauuu uuuaag)--- -----ggaa| 6541 |---AGAC-U A--AAAGAAG -GGAA-AGGA ACUCGGCAAA ---------- ---------- 6601 ---------- ---------- ---------- ---------- ---------- ---------- 6661 ---------- ---------- ---------- ---------- ---------- ---------- 6721 ---------- ---------- ---------- ---------- ---------- ---------- 6781 ------(--- )--------c acAAGCCU|C GC---CUG-U UU(ACCAA)A AA-CAUC-GC 6841 CUCCUG|C-- ---------- ---------- (gacuacauu ga----)--- ---------- 6901 ------GUA- UAG-GAGGUC CAGCCU<--- ---------- ---------- ---------- 6961 ---------- ---------- -------->G CC-CA-GU|G AC-------- ---------- 7021 ---------- --(------- ---------- ---------- ---------- ---------- 7081 ---------- ---------- --------ua cgg)------ ---------- ---------| 7141 ---GUUC-AA C-|GG-C|-C -GCGGU-(AU -UUUG)ACCG UG|C(AAA)- GG-UAGCGCA 7201 AUC-AC-U-U |GUCUCU(-U AAAU-)AGAG AC|CU-GUAU GAAUGGCUAG A-CGAGGGCU 7261 UA-------- ---------- -------ACU GUCUCCCCCU UCCA-GU-CA ----GUGAAA 7321 UU|G|AUCUA UC-CG(U-GC AGAAG)CGGG UAU----AAU UAUACAAGAC GAGAAG-ACC 7381 CUUUGG-|-A GCUUA--AGG UA|-caaaau uca--g---| <--------- ---------- 7441 ---------- ---------- --->------ ---------- ---------- ---------- 7501 ---------- ---------- ---------- --<------- ------ccac guuaa-auga 7561 cu-cuacaaa aagcaagaac cuaguggcca g--------- ---------- ---------- 7621 ---------- ---------- ---------> --(------- -)-------- ---------- 7681 ---------- -------|-- ---------- ---------- ---------- ---------- 7741 -----(---- ----)----- ---------- ---------- ---------- --------<- 7801 ---------- ---------- ---------- ---------- ---------- ---------- 7861 ---------- ---------- ---------- ---------- ---------- ---------- 7921 ---------- ---------- ---------- ---------- ---------- ---------- 7981 ---------- ---------- ---------- ---------- ---------- ---------- 8041 ---------- ---------- ---------- ---------- ---------- ---------- 8101 ---------- ---------- ----->---- ----u-gaag uuu---U-AC CUUCGGUUG( 8161 GGG)CG-AC- C|ACGGAG(- --------GA AAGAUAAGC- )CUCC-GA|G |u|gg---|< 8221 ---------- ---------- ---------- ---------- ---------- ---------- 8281 ---------- ---------- ---------- ---------- ---------- ------acug 8341 ggcuaaau-- cccca----- ---------- ---------- ---------- ->-------- 8401 ---------- ---------- ---------- ---------- ---------- ---------- 8461 ---------- ---------- ---------- ---------- ---------- ---------- 8521 ---------- ---------- ---------- ---------- ---------- ---------- 8581 ---------- ---------- ---------- ---------- ---------- ---------- 8641 ---------- ---------- ---------- ---------- ---------- ---------- 8701 ---------- ---------- ---------- ---------- --|------- ---------- 8761 --------aa gccaa-gag( -auacau--- )cuaua-agc -cgcagaaca ucug------ 8821 ---------- ---------- ---------- ---------- ---------- --------ac 8881 c|---aagaa UGAUC-cgac u--------- ---------- ---(------ ---------- 8941 ---------- ---------- ---------- ---------- --------ga aa)--|--ag 9001 ccgAUCAAC- |GAA-CCAAG UUACCC|UAG G|GAUAACAG |C-GCA-A-U CCUCUCCCAG 9061 AG(U--CCAU )AUCGACGAG --GGGGUUUA CG-ACCUCGA UGUU|GG--A U|C|AGGAC| 9121 AU-CC-UAAU GG-UG(--CA -GC)CGCUAU UAAG-GGU|U CGUU(UGUUC )AACGA-UUA 9181 A--AGUCCU- --ACGUGAUC UGAGUUCAGA CC|GG-A(GU AA)UCCAGGU CAGUUUCUAU 9241 CU|GUA---- --|-|<---- ---------- ---------- ---------- -----gcgc- 9301 >--------- ---------- -uA-CUU-UU CC--(UAGU- AC(-GAAA)G GAUC-)GGAA 9361 A--AG-- ggggccu-au ac-------- 9421 -|-------- (-----) 9541 ---------- ---------- gcac-gcccc gcc------- ---------- -------ccu 9601 ---------- ---aauugau (gaaaac--a aauaa)a-uu -aa-guaaag g--------- 9661 ---------- -------<-- ----gaggg- ---------- ---------- ---------- 9721 ---------- ---------- ---------- ---------- ---------- ---------- 9781 ---------- ---------- ---------- ---------- ---------- ---------- 9841 ---------- ---------- ---------- ---------- ---------- ---------- 9901 -------cca aaaccccuac c----->--| ------(--- )--------- -------|gu 9961 cc-(aaaaua a--)-ggaca ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10021 ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~~~ 10141 ~~~~~~~~~~ ~~~~~~~~~~ ~)~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10201 ~~~~~~~~~~ ~|~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10321 ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ||||| // LOCUS mt.L.chr.1 10775 bp RNA RNA 11-JAN-191 DEFINITION Mitochondrion Luxilus chrysocephalus. ACCESSION No information KEYWORDS No information. SOURCE Mitochondrion Luxilus chrysocephalus. ORGANISM Mitochondrion Luxilus chrysocephalus. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 10775) Corresponding GenBank entry: U09469 LOCUS LCU09469 2007 bp DNA VRT 22-MAY-1994 DEFINITION Luxilus chrysocephalus chrysocephalus Whitewater R., Bollinger Co., MO, USA, mitochondrion 12S rRNA and 16S rRNA genes, partial sequence, and tRNA-Val gene, complete sequence. ACCESSION U09469 KEYWORDS . SOURCE striped shiner ORGANISM Mitochondrion Luxilus chrysocephalus Eukaryotae; Hyperchondria; Eukaryote crown group; Metazoa/Eumycota group; Metazoa; Eumetazoa; Bilateria; Coelomata; Deuterostomia; Chordata; Vertebrata; Gnathostomata; Osteichthyes; Actinopterygii; Actinopteri; Holostei; Halecostomi; Teleostei; Elopocephala; Clupeocephala; Euteleostei; Ostariophysi; Otophysi; Cypriniformes; Cyprinoidea; Cyprinidae; Luxilus. REFERENCE 1 (bases 1 to 2007) AUTHORS Duvernell,D.D. and Aspinwall,N. TITLE Introgression of Luxilus cornutus mtDNA into allopatric populations of Luxilus chrysocephalus (Teleostei:Cyprinidae) in Missouri and Arkansas JOURNAL Unpublished STANDARD full automatic REFERENCE 2 (bases 1 to 2007) AUTHORS Aspinwall,N. TITLE Direct Submission JOURNAL Submitted (06-MAY-1994) Nevin Aspinwall, Saint Louis University, Biology, 3507 Laclede, St. Louis, MO 63103-2010, USA STANDARD full automatic COMMENT NCBI gi: 488578 FEATURES Location/Qualifiers rRNA <1..469 /product="12S rRNA" tRNA 470..540 /product="tRNA-Val" rRNA 541..>2007 /product="16S rRNA" source 1..2007 /mitochondrion /organism="Luxilus chrysocephalus" /sub_species="chrysocephalus" /isolate="Collection site: Whitewater R., Bollinger Co., MO, USA" /haplotype="CHRC" /tissue_type="muscle, skeletal" /dev_stage="adult" BASE COUNT 662 a 468 c 451 g 426 t ORIGIN BASE COUNT 500 a 332 c 320 g 315 t 9308 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~G C--------- ----caacca 301 |GCU--AGC| UUa------- -|-------- ---------- ---------| -----(---- 361 ---------) -|-------- -------|-- -------(-- ---------- ---------- 421 -------)-- ---------- ---------- ---------- ---------- -----(---- 481 )---|----- --(-----)- ---------- ---------- ---------- -(------)- 541 ---------- ---------- ---- ---------- |-----ACAA 841 CUA(ACCA)U UUU------- ---------- ---------- ---------- ---------- 901 ------(--- --)------- |uac-cugA- -GUAU-G(-- gaga)CAGAA -Aagg-u--- 961 -------<-- --ucacc--- ---------- ---------- ---------- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- --->------ 1201 ---------- ---------- ---------- ---------< ---------- ---------- 1261 ---------- ---------- ---------> (------)-- ---------- ---|-(---) 1321 -------(-- -----)---- ---------- ---------- ---------- --<------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- >--------- ------(--- ---------- 1561 -------)-- ---------- ---------- -(-------) ---------- ---------- 1621 ---------u c-GA-GCGAU AGAA-AA--- ---AGUACC( -GCAA-)GGG ---AAA-GC- 1681 ugaaagagaa augaaacaac ccaua----- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- -----uaa-G C-AAAA ACAAAG---- --------<- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------> (--acuaaac 2041 --)------- -----CUU-G UACCUU(UU- GCAUC)AUGA |UUU-AGCCA GUacc--cu- 2101 caagcaaag- ---------- -------(-- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- -)-------- ---------- 2521 ----(----- )-----<--- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- agau->---- --(------) ---------- ---------- -cuuuaguuu 2701 gau-acCCCG AA-ACCAG-G UG-AGCUACC CCG-AGA-CA GCCU------ ---------- 2761 -(-------- ---------- ---------- ---------a uauaauuua) ---------- 2821 -GGGCUAA-C CC-GUCUCU( GUGGCAA-A) AGAG-UGGGA --AGAGCUC- CGGGUAG-AA 2881 GU(G-ACAG) ACC-UACC-G A-ACCUGGUG AUAGCU-GGU UGCCU--AAG AA-AUG-AA- 2941 (-uag-)-UU CG----CUCG CACA<----- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ------->-- ---|------ 3061 -|------|- ---------- ---------- --------(- --------)< cccuuaauca 3121 aaaa-----a cacaucacca agauauu--- ---------- ---------- ---------- 3181 ----auggaa ac-------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---->----- ---------- 3301 ---------- ---------- ----|----- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ------GU-A -CGAG-AGUU AGUUG--AA- GG-gg(-GUA 3481 CAG)--CCUU UA-AC----- -aAAGG(AUA -CAA)CCU-u uacag-g-ag -ga-UAA--- 3541 --agaucaua auaaaua-a- aauaua---- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ------cugu u<-------- ---------- ---------- 3721 ---------- ---------- ---------- ---------- -->CUAGU-G GGC(CUGAAA 3781 GC-A)-GCCA -UCUA|A(A- CA)-|GAAAG C(--GUUAAA )GC|-ucgg- acag--<--- 3841 --aaggaaau uuauuauccg auaaaa---- ---------- ---------- ---------- 3901 ->-------- -------|-- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- ---------- 4021 ---------- ---------- ---------- ---------- ---------- ---------- 4081 -------|uc u-ac--ucc| cuac-ug|-- ---------- ---------- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- ---------- ---------- ---------- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------u aUUAG--C|- CA-ACCAUG- ---------- 4501 ---------- ---------- (-cua---)< ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ------->-- ---------- ---------| CAUGG-UGAG ACUAUGC-UA 4681 A-|AUGAGUA -ACAA-GAA- ---------- (-gacuuga- ---------- ---------- 4741 ---------- -----)---- ------|ucu u-cucc-gCA Caa--gugua a|-----aca 4801 gauc----ga ---------- ----(---cu ag)c-c|--a cuggaa---- ---------- 4861 ---uuuaa-- -cga------ ---------- -------(-- ---------- ------)<-- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 >--------- ---------- ---------- ----(----- ---------- ---------- 5041 ---------- ---------- ----)----- |-----|--- ---------- |--<------ 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ---------- ---------- 5221 ---------- ---------- ---------- ---------- ---------- ---------- 5281 ---------- ---------- ---------- ---------- ---------- ---------- 5341 ---------- ---------- ---------- ---------- ---------- ---------- 5401 ---------- ---------- ------->-- ---------- ---------- ---------- 5461 -----(---- ------)--- ---|------ --------|- ---------- -(-----)-- 5521 |--------- ---------- ---------- -----(---- )--------- ---------- 5581 --<------- ---------- ---------- ---------- ---------- ---------- 5641 ---------- ---------- ------->-- ---------- ---------- ---<------ 5701 ---------- gcccaaccaa agaggcauug ugaauaauau agaccucaag aagagcucac 5761 aauuaaguaa ---------- ---------- ---------- ---------- ---------- 5821 ---------- ---------- ---------- ---------- ---------- ---------- 5881 ---------- ---------- ---------- ---------- ---------- ---------- 5941 ---------- ---------- ---------- ---------- ---------- ---------- 6001 ---------- ---------- ---------- ---------- ---------- ---------- 6061 ---------- ---------- ---------- ---------- ---------- ---------- 6121 ---------- ---------- ---------- ---------- ---------- ---------- 6181 ---------- ---------- ---------- ---------- ---------- ---------- 6241 ---------- ---------- ---------- ---------- ---------- ---------- 6301 ---------- ---------- ---------- ---------- ---------- ---------- 6361 ---------- ---------- ---------- ---------- ---------- ---------- 6421 ---------- ---------- ------>--- ---------- ---------- --ucg--|-- 6481 --uuaacCC- -(CACACU)G G|AGUGg--- ----(cauuu uaa---)--- ----gggaa| 6541 |---AGAC-U A--AAAGAAG -GGGA-AGGA ACUCGGCAAA ---------- ---------- 6601 ---------- ---------- ---------- ---------- ---------- ---------- 6661 ---------- ---------- ---------- ---------- ---------- ---------- 6721 ---------- ---------- ---------- ---------- ---------- ---------- 6781 ------(--- )--------- cacAAGCC|U GC---CUG-U UU(ACCAA)A AA-CAUG--C 6841 CUCCUG|C-- ---------- ---------- (-agcaaaga ------)--- ---------- 6901 ------GUA- UAG-GAGGUC CAGCCU<--- ---------- ---------- ---------- 6961 ---------- ---------- -------->G CC-CA-GU|G AC-------- ---------- 7021 ---------- --(------- ---------- ---------- ---------- ---------- 7081 ---------- ---------- --------ua cgg)------ ---------- ---------| 7141 ---GUUC-AA C-|GG-C|cC -GCGGU-(AU -AUUG)ACCG UG|C(AAA)- GG-UAGCGCA 7201 AUC-AC-U-U |GUCUUU(-U AAAU-)AGAG AC|CU-GUAU GAAUGGCUAG A-CGAGGGCU 7261 UA-------- ---------- -------ACU GUCUCCCCCU UCCA-GU-CG ----GUGAAA 7321 UU|G|AUCUA UC-CG(U-GC AGAAG)CGUA UAU-----AU --UACGAGAC GAGAAG-ACC 7381 CUUUGG-|-A GCUUA--AGG UA|caaaguu ca-------| <--------- ---------- 7441 ---------- ---------- --->------ ---------- ---------- ---------- 7501 ---------- ---------- ---------- --<-aucacg uuaagcaacu ccaua-agaa 7561 cg---aag-- ---aacuua- ---------- gugg------ ---------- ---------- 7621 ---------- ---------- ---------> --(------- -)-------- ---------- 7681 ---------- -------|-- ---------- ---------- ---------- ---------- 7741 -----(---- ----)----- ---------- ---------- ---------- --------<- 7801 ---------- ---------- ---------- ---------- ---------- ---------- 7861 ---------- ---------- ---------- ---------- ---------- ---------- 7921 ---------- ---------- ---------- ---------- ---------- ---------- 7981 ---------- ---------- ---------- ---------- ---------- ---------- 8041 ---------- ---------- ---------- ---------- ---------- ---------- 8101 ---------- ---------- ----->---- -ccau-gaaa uu----u-uc auUCGGUUG( 8161 GGG)CG-AC- C|ACGGAG(- --------GA AAAACAAGC- )CUCC-GA|G |u|gg---|< 8221 ---------- ---------- ---------- ---------- ---------- ---------- 8281 ---------- ---------- ---------- ---------- ---------- ----acuggg 8341 ccaagac-cc cua------- ---------- ---------- ---------- ->-------- 8401 ---------- ---------- ---------- ---------- ---------- ---------- 8461 ---------- ---------- ---------- ---------- ---------- ---------- 8521 ---------- ---------- ---------- ---------- ---------- ---------- 8581 ---------- ---------- ---------- ---------- ---------- ---------- 8641 ---------- ---------- ---------- ---------- ---------- ---------- 8701 ---------- ---------- ---------- ---------- --|------- ---------- 8761 --------aa gccaa-aag( -gaacac--- )cuuua-agc -cgcagaaca ucug------ 8821 ---------- ---------- ---------- ---------- ---------- --------ac 8881 c|---aacaa UGAUC-cggc u--------- ---------- ---(------ ---------- 8941 ---------- ---------- ---------- ---------- --------aa aa)--|--ag 9001 ccgAUCAAC- |GGA-CCAAG UUACCC|UAG G|GAUAACAG |C-GCA-A-U CCUCUCCCAG 9061 AG(C--CCAU )AUCGACGAG --GGGGUUUA CG-ACCUCGA UGUU|GG--A U|C|AGGAC| 9121 AU-CC-UGGU GG-UG(--CA -GC)CGCUAU UAAG-GGU|U CGUU(UGUUC )AACGA-UUA 9181 A--AGUCCU- --AC~~~~~~ ~~~~~~~~~~ ~~|~~~~(~~ ~~)~~~~~~~ ~~~~~~~~~~ 9241 ~~|~~~~~~~ ~~|~|<~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9301 >~~~~~~~~~ ~~~~~~~~~~ ~~~-~~~~~~ ~~~~(~~~~~ ~~(~~~~~)~ ~~~~~)~~~~ 9361 ~~~~~-<~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~>~ ~~~~~~~~~~ ~~~~~~~~~~ 9421 ~|~~~~~~~~ (~~~~~)<~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~> 9541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9601 ~~~~~~~~~~ ~~~~~~~~~~ (~~~~~~~~~ ~~~~~)~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9661 ~~~~~~~~~~ ~~~~~~~<~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~>~~| ~~~~~~(~~~ )~~~~~~~~~ ~~~~~~~|~~ 9961 ~~~(~~~~~~ ~~~)~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10021 ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~~~ 10141 ~~~~~~~~~~ ~~~~~~~~~~ ~)~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10201 ~~~~~~~~~~ ~|~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10321 ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ||||| // LOCUS mt.L.chr.2 10775 bp RNA RNA 11-JAN-191 DEFINITION Mitochondrion Luxilus chrysocephalus. ACCESSION No information KEYWORDS No information. SOURCE Mitochondrion Luxilus chrysocephalus. ORGANISM Mitochondrion Luxilus chrysocephalus. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 10775) Corresponding GenBank entry: U09472 LOCUS LCU09472 2008 bp DNA VRT 22-MAY-1994 DEFINITION Luxilus chrysocephalus isolepis mitochondrion 12S rRNA and 16S rRNA genes, partial sequence, and tRNA-Val gene, complete sequence. ACCESSION U09472 KEYWORDS . SOURCE striped shiner ORGANISM Mitochondrion Luxilus chrysocephalus Eukaryotae; Hyperchondria; Eukaryote crown group; Metazoa/Eumycota group; Metazoa; Eumetazoa; Bilateria; Coelomata; Deuterostomia; Chordata; Vertebrata; Gnathostomata; Osteichthyes; Actinopterygii; Actinopteri; Holostei; Halecostomi; Teleostei; Elopocephala; Clupeocephala; Euteleostei; Ostariophysi; Otophysi; Cypriniformes; Cyprinoidea; Cyprinidae; Luxilus. REFERENCE 1 (bases 1 to 2008) AUTHORS Duvernell,D.D. and Aspinwall,N. TITLE Introgression of Luxilus cornutus mtDNA into allopatric populations of Luxilus chrysocephalus (Teleostei:Cyprinidae) in Missouri and Arkansas JOURNAL Unpublished STANDARD full automatic REFERENCE 2 (bases 1 to 2008) AUTHORS Aspinwall,N. TITLE Direct Submission JOURNAL Submitted (06-MAY-1994) Nevin Aspinwall, Saint Louis University, Biology, 3507 Laclede, St. Louis, MO 63103-2010, USA STANDARD full automatic COMMENT NCBI gi: 488581 FEATURES Location/Qualifiers rRNA <1..469 /product="12S rRNA" tRNA 470..540 /product="tRNA-Val" rRNA 541..>2008 /product="16S rRNA" source 1..2008 /mitochondrion /organism="Luxilus chrysocephalus" /sub_species="isolepis" /isolate="Collection site: Saline R., Grant Co., AR, USA" /haplotype="CHRI" /tissue_type="muscle, skeletal" /dev_stage="adult" BASE COUNT 661 a 468 c 451 g 428 t ORIGIN BASE COUNT 500 a 332 c 320 g 316 t 9307 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~G C--------- ----caacca 301 |GCU--AGC| UUa------- -|-------- ---------- ---------| -----(---- 361 ---------) -|-------- -------|-- -------(-- ---------- ---------- 421 -------)-- ---------- ---------- ---------- ---------- -----(---- 481 )---|----- --(-----)- ---------- ---------- ---------- -(------)- 541 ---------- ---------- ---- ---------- |-----ACAA 841 CUA(ACCA)U UUU------- ---------- ---------- ---------- ---------- 901 ------(--- --)------- |uac-cugA- -GUAU-G(-- gaga)CAGAA -Aagg-u--- 961 -------<-- --ucacc--- ---------- ---------- ---------- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- --->------ 1201 ---------- ---------- ---------- ---------< ---------- ---------- 1261 ---------- ---------- ---------> (------)-- ---------- ---|-(---) 1321 -------(-- -----)---- ---------- ---------- ---------- --<------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- >--------- ------(--- ---------- 1561 -------)-- ---------- ---------- -(-------) ---------- ---------- 1621 ---------u c-GA-GCGAU AGAA-AA--- ---AGUACC( -GCAA-)GGG ---AAA-GC- 1681 ugaaagagaa augaaacaac ccaua----- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- -----uaa-G C-AAAA ACAAAG---- --------<- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------> (--acuaaac 2041 --)------- -----CUU-G UACCUU(UU- GCAUC)AUGA |UUU-AGCCA GUacc--cu- 2101 caagcaaag- ---------- -------(-- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- -)-------- ---------- 2521 ----(----- )-----<--- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- agau->---- --(------) ---------- ---------- -cuuuaguuu 2701 gau-acCCCG AA-ACCAG-G UG-AGCUACC CCG-AGA-CA GCCU------ ---------- 2761 -(-------- ---------- ---------- ---------a uauaauuua) ---------- 2821 -GGGCUAA-C CC-GUCUCU( GUGGCAA-A) AGAG-UGGGA --AGAGCUC- CGGGUAG-AA 2881 GU(G-ACAG) ACC-UACC-G A-ACCUGGUG AUAGCU-GGU UGCCU--AAG AA-AUG-AA- 2941 (-uag-)-UU CG----CUCG CACA<----- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ------->-- ---|------ 3061 -|------|- ---------- ---------- --------(- --------)< cccuuaauca 3121 aaga-----a cacaucacca agauauu--- ---------- ---------- ---------- 3181 ----auggaa ac-------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---->----- ---------- 3301 ---------- ---------- ----|----- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ------GU-A -CGAG-AGUU AGUUG--AA- GG-gg(-GUA 3481 CAG)--CCUU UA-AC----- -aAAGG(AUA -CAA)CCU-u uacag-g-ag -ga-UAA--- 3541 --agaucaua auaaaua-a- aauaua---- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ------cugu u<-------- ---------- ---------- 3721 ---------- ---------- ---------- ---------- -->CUAGU-G GGC(CUGAAA 3781 GC-A)-GCCA -UCUA|A(A- CA)-|GAAAG C(--GUUAAA )GC|-ucgg- acag--<--- 3841 --aaggaaau uuauuauccg auaaaa---- ---------- ---------- ---------- 3901 ->-------- -------|-- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- ---------- 4021 ---------- ---------- ---------- ---------- ---------- ---------- 4081 -------|uc u-ac--ucc| cuac-ug|-- ---------- ---------- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- ---------- ---------- ---------- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------u aUUAG--C|- CA-ACCAUG- ---------- 4501 ---------- ---------- (-cua---)< ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ------->-- ---------- ---------| CAUGG-UGAG ACUAUGC-UA 4681 A-|AUGAGUA -ACAA-GAA- ---------- (-gacuuga- ---------- ---------- 4741 ---------- -----)---- ------|ucu u-cucc-gCA Caa--gugua a|-----aca 4801 gauc----ga ---------- ----(---cu ag)c-c|--a cuggaa---- ---------- 4861 ---uuuaa-- -cga------ ---------- -------(-- ---------- ------)<-- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 >--------- ---------- ---------- ----(----- ---------- ---------- 5041 ---------- ---------- ----)----- |-----|--- ---------- |--<------ 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ---------- ---------- 5221 ---------- ---------- ---------- ---------- ---------- ---------- 5281 ---------- ---------- ---------- ---------- ---------- ---------- 5341 ---------- ---------- ---------- ---------- ---------- ---------- 5401 ---------- ---------- ------->-- ---------- ---------- ---------- 5461 -----(---- ------)--- ---|------ --------|- ---------- -(-----)-- 5521 |--------- ---------- ---------- -----(---- )--------- ---------- 5581 --<------- ---------- ---------- ---------- ---------- ---------- 5641 ---------- ---------- ------->-- ---------- ---------- ---<------ 5701 ---------- gcccaaccaa agaggcauug ugaauaauaa agaccucaag aagaacucac 5761 aauuaaguaa ---------- ---------- ---------- ---------- ---------- 5821 ---------- ---------- ---------- ---------- ---------- ---------- 5881 ---------- ---------- ---------- ---------- ---------- ---------- 5941 ---------- ---------- ---------- ---------- ---------- ---------- 6001 ---------- ---------- ---------- ---------- ---------- ---------- 6061 ---------- ---------- ---------- ---------- ---------- ---------- 6121 ---------- ---------- ---------- ---------- ---------- ---------- 6181 ---------- ---------- ---------- ---------- ---------- ---------- 6241 ---------- ---------- ---------- ---------- ---------- ---------- 6301 ---------- ---------- ---------- ---------- ---------- ---------- 6361 ---------- ---------- ---------- ---------- ---------- ---------- 6421 ---------- ---------- ------>--- ---------- ---------- --ucg--|-- 6481 --uuaacCC- -(CACACU)G G|AGUGg--- ----(cauuu uaa---)--- ----gggaa| 6541 |---AGAC-U A--AAAGAAG -GGGA-AGGA ACUCGGCAAA ---------- ---------- 6601 ---------- ---------- ---------- ---------- ---------- ---------- 6661 ---------- ---------- ---------- ---------- ---------- ---------- 6721 ---------- ---------- ---------- ---------- ---------- ---------- 6781 ------(--- )--------- cacAAGCC|U GC---CUG-U UU(ACCAA)A AA-CAUG--C 6841 CUCCUG|C-- ---------- ---------- (-agcaaaaa ------)--- ---------- 6901 ------GUA- UAG-GAGGUC CAGCCU<--- ---------- ---------- ---------- 6961 ---------- ---------- -------->G CC-CA-GU|G AC-------- ---------- 7021 ---------- --(------- ---------- ---------- ---------- ---------- 7081 ---------- ---------- --------ua cgg)------ ---------- ---------| 7141 ---GUUC-AA C-|GG-C|cC -GCGGU-(AU -AUUG)ACCG UG|C(AAA)- GG-UAGCGCA 7201 AUC-AC-U-U |GUCUUU(-U AAAU-)AGAG AC|CU-GUAU GAAUGGCUAG A-CGAGGGCU 7261 UA-------- ---------- -------ACU GUCUCCCCCU UCCA-GU-CG ----GUGAAA 7321 UU|G|AUCUA UC-CG(U-GC AGAAG)CGUA UAU-----AU --UACGAGAC GAGAAG-ACC 7381 CUUUGG-|-A GCUUA--AGG UA|caaaauu ca-------| <--------- ---------- 7441 ---------- ---------- --->------ ---------- ---------- ---------- 7501 ---------- ---------- ---------- --<-gccacg uuaagcaacu ccaua-agaa 7561 ---------- ---------g caagaacuua augg------ ---------- ---------- 7621 ---------- ---------- ---------> --(------- -)-------- ---------- 7681 ---------- -------|-- ---------- ---------- ---------- ---------- 7741 -----(---- ----)----- ---------- ---------- ---------- --------<- 7801 ---------- ---------- ---------- ---------- ---------- ---------- 7861 ---------- ---------- ---------- ---------- ---------- ---------- 7921 ---------- ---------- ---------- ---------- ---------- ---------- 7981 ---------- ---------- ---------- ---------- ---------- ---------- 8041 ---------- ---------- ---------- ---------- ---------- ---------- 8101 ---------- ---------- ----->---- -ccau-gaag uu----u-uc auUCGGUUG( 8161 GGG)CG-AC- C|ACGGAG(- --------GA AAAGCAAGC- )CUCC-GA|G |u|gg---|< 8221 ---------- ---------- ---------- ---------- ---------- ---------- 8281 ---------- ---------- ---------- ---------- ---------- ----acuggg 8341 ccaagac-cc cua------- ---------- ---------- ---------- ->-------- 8401 ---------- ---------- ---------- ---------- ---------- ---------- 8461 ---------- ---------- ---------- ---------- ---------- ---------- 8521 ---------- ---------- ---------- ---------- ---------- ---------- 8581 ---------- ---------- ---------- ---------- ---------- ---------- 8641 ---------- ---------- ---------- ---------- ---------- ---------- 8701 ---------- ---------- ---------- ---------- --|------- ---------- 8761 --------aa gccaa-aag( -agacac--- )cuuua-agc -cgcagaaca ucug------ 8821 ---------- ---------- ---------- ---------- ---------- --------ac 8881 c|---aauaa UGAUC-cggc u--------- ---------- ---(------ ---------- 8941 ---------- ---------- ---------- ---------- -------aau aa)--|--ag 9001 ccgAUCAAC- |GGA-CCAAG UUACCC|UAG G|GAUAACAG |C-GCA-A-U CCUCUCCCAG 9061 AG(C--CCAU )AUCGACGAG --GGGGUUUA CG-ACCUCGA UGUU|GG--A U|C|AGGAC| 9121 AU-CC-UGGU GG-UG(--CA -GC)CGCUAU UAAG-GGU|U CGUU(UGUUC )AACGA-UUA 9181 A--AGUCCU- --AC~~~~~~ ~~~~~~~~~~ ~~|~~~~(~~ ~~)~~~~~~~ ~~~~~~~~~~ 9241 ~~|~~~~~~~ ~~|~|<~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9301 >~~~~~~~~~ ~~~~~~~~~~ ~~~-~~~~~~ ~~~~(~~~~~ ~~(~~~~~)~ ~~~~~)~~~~ 9361 ~~~~~-<~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~>~ ~~~~~~~~~~ ~~~~~~~~~~ 9421 ~|~~~~~~~~ (~~~~~)<~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~> 9541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9601 ~~~~~~~~~~ ~~~~~~~~~~ (~~~~~~~~~ ~~~~~)~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9661 ~~~~~~~~~~ ~~~~~~~<~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~>~~| ~~~~~~(~~~ )~~~~~~~~~ ~~~~~~~|~~ 9961 ~~~(~~~~~~ ~~~)~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10021 ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~~~ 10141 ~~~~~~~~~~ ~~~~~~~~~~ ~)~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10201 ~~~~~~~~~~ ~|~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10321 ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ||||| // LOCUS mt.L.chr.3 10775 bp RNA RNA 11-JAN-191 DEFINITION Mitochondrion Luxilus chrysocephalus. ACCESSION No information KEYWORDS No information. SOURCE Mitochondrion Luxilus chrysocephalus. ORGANISM Mitochondrion Luxilus chrysocephalus. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 10775) Corresponding GenBank entry: U09473 LOCUS LCU09473 2003 bp DNA VRT 22-MAY-1994 DEFINITION Luxilus chrysocephalus chrysocephalus Meramec R., Jefferson Co., MO, USA, mitochondrion 12S rRNA and 16S rRNA genes, partial sequence, and tRNA-Val gene, complete sequence. ACCESSION U09473 KEYWORDS . SOURCE striped shiner ORGANISM Mitochondrion Luxilus chrysocephalus Eukaryotae; Hyperchondria; Eukaryote crown group; Metazoa/Eumycota group; Metazoa; Eumetazoa; Bilateria; Coelomata; Deuterostomia; Chordata; Vertebrata; Gnathostomata; Osteichthyes; Actinopterygii; Actinopteri; Holostei; Halecostomi; Teleostei; Elopocephala; Clupeocephala; Euteleostei; Ostariophysi; Otophysi; Cypriniformes; Cyprinoidea; Cyprinidae; Luxilus. REFERENCE 1 (bases 1 to 2003) AUTHORS Duvernell,D.D. and Aspinwall,N. TITLE Introgression of Luxilus cornutus mtDNA into allopatric populations of Luxilus chrysocephalus (Teleostei:Cyprinidae) in Missouri and Arkansas JOURNAL Unpublished STANDARD full automatic REFERENCE 2 (bases 1 to 2003) AUTHORS Aspinwall,N. TITLE Direct Submission JOURNAL Submitted (06-MAY-1994) Nevin Aspinwall, Saint Louis University, Biology, 3507 Laclede, St. Louis, MO 63103-2010, USA STANDARD full automatic COMMENT NCBI gi: 488582 FEATURES Location/Qualifiers rRNA <1..469 /product="12S rRNA" tRNA 470..540 /product="tRNA-Val" rRNA 541..>2003 /product="16S rRNA" source 1..2003 /mitochondrion /organism="Luxilus chrysocephalus" /sub_species="chrysocephalus" /isolate="Collection site: Meramec R., Jefferson Co., MO, USA" /haplotype="CORN3" /tissue_type="muscle, skeletal" /dev_stage="adult" /note="mtDNA sequence is an introgressed haplotype from L. cornutus" BASE COUNT 656 a 468 c 454 g 425 t ORIGIN BASE COUNT 496 a 331 c 320 g 316 t 9312 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~G C--------- ----caacca 301 |GCU--AGC| UUa------- -|-------- ---------- ---------| -----(---- 361 ---------) -|-------- -------|-- -------(-- ---------- ---------- 421 -------)-- ---------- ---------- ---------- ---------- -----(---- 481 )---|----- --(-----)- ---------- ---------- ---------- -(------)- 541 ---------- ---------- ---- ---------- |-----ACAA 841 CUA(ACCA)U UUU------- ---------- ---------- ---------- ---------- 901 ------(--- --)------- |uac-cugA- -GUAU-G(-- gaga)CAGAA -Aagg-u--- 961 -------<-- --ucacc--- ---------- ---------- ---------- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- --->------ 1201 ---------- ---------- ---------- ---------< ---------- ---------- 1261 ---------- ---------- ---------> (------)-- ---------- ---|-(---) 1321 -------(-- -----)---- ---------- ---------- ---------- --<------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- >--------- ------(--- ---------- 1561 -------)-- ---------- ---------- -(-------) ---------- ---------- 1621 ---------u c-AA-GCGAU AGAA-AA--- ---AGUACC( -GCAA-)GGG ---AAA-GC- 1681 ugaaagagaa augaaacaac ccaua----- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- -----uaa-G C-AAAA ACAAAG---- --------<- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------> (--acuaaac 2041 --)------- -----CUU-G UACCUU(UU- GCAUC)AUGA |UUU-AGCCA GUacc--cu- 2101 caagcaaag- ---------- -------(-- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- -)-------- ---------- 2521 ----(----- )-----<--- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- agau->---- --(------) ---------- ---------- -cuuuaguuu 2701 gau-acCCCG AA-ACCAG-G UG-AGCUACC CCG-AGA-CA GCCU------ ---------- 2761 -(-------- ---------- ---------- ---------a uauaauuua) ---------- 2821 -GGGCUAA-C CC-GUCUCU( GUGGCAA-A) AGAG-UGGGA --AGAGCUC- CGGGUAG-AA 2881 GU(G-ACAG) ACC-UACC-G A-ACCUGGUG AUAGCU-GGU UGCCU--AAG AA-AUG-AA- 2941 (-uag-)-UU CG----CUCG CACA<----- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ------->-- ---|------ 3061 -|------|- ---------- ---------- --------(- --------)< cccuuaauca 3121 agaa-----a cacaucauca agauauu--- ---------- ---------- ---------- 3181 ----auggaa ac-------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---->----- ---------- 3301 ---------- ---------- ----|----- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ------GU-A -CGAG-AGUU AGUUG--AA- GG-gg(-GUA 3481 CAG)--CCUU UA-AC----- -aAAGG(AUA -CAA)CCU-u uacag-g-ag -ga-UAA--- 3541 --agaucaua cuaagua-a- aauaua---- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ------cugu u<-------- ---------- ---------- 3721 ---------- ---------- ---------- ---------- -->CUAGU-G GGC(CUGAAA 3781 GC-A)-GCCA -UCUA|A(A- CA)-|GAAAG C(--GUUAAA )GC|-ucgg- acag--<--- 3841 --aaggaaau uuauuauccg auaaaa---- ---------- ---------- ---------- 3901 ->-------- -------|-- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- ---------- 4021 ---------- ---------- ---------- ---------- ---------- ---------- 4081 -------|uc u-ac--ucc| cuac-ug|-- ---------- ---------- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- ---------- ---------- ---------- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------u aUUAG--C|- CA-ACCAUG- ---------- 4501 ---------- ---------- (-cua---)< ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ------->-- ---------- ---------| CAUGG-UGAG ACUAUGC-UA 4681 A-|AUGAGUA -ACAA-GAA- ---------- (-gacuuga- ---------- ---------- 4741 ---------- -----)---- ------|ucu u-cucc-gCA Caa--gugua a|-----aca 4801 gauc----ga ---------- ----(---cu aa)c-c|--g cuggaa---- ---------- 4861 ---uuuaa-- -cga------ ---------- -------(-- ---------- ------)<-- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 >--------- ---------- ---------- ----(----- ---------- ---------- 5041 ---------- ---------- ----)----- |-----|--- ---------- |--<------ 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ---------- ---------- 5221 ---------- ---------- ---------- ---------- ---------- ---------- 5281 ---------- ---------- ---------- ---------- ---------- ---------- 5341 ---------- ---------- ---------- ---------- ---------- ---------- 5401 ---------- ---------- ------->-- ---------- ---------- ---------- 5461 -----(---- ------)--- ---|------ --------|- ---------- -(-----)-- 5521 |--------- ---------- ---------- -----(---- )--------- ---------- 5581 --<------- ---------- ---------- ---------- ---------- ---------- 5641 ---------- ---------- ------->-- ---------- ---------- ---<------ 5701 ---------- gcccaaccaa agaggcauug ugaauaauau aaaccucaag aagaacucac 5761 aauuaaguaa ---------- ---------- ---------- ---------- ---------- 5821 ---------- ---------- ---------- ---------- ---------- ---------- 5881 ---------- ---------- ---------- ---------- ---------- ---------- 5941 ---------- ---------- ---------- ---------- ---------- ---------- 6001 ---------- ---------- ---------- ---------- ---------- ---------- 6061 ---------- ---------- ---------- ---------- ---------- ---------- 6121 ---------- ---------- ---------- ---------- ---------- ---------- 6181 ---------- ---------- ---------- ---------- ---------- ---------- 6241 ---------- ---------- ---------- ---------- ---------- ---------- 6301 ---------- ---------- ---------- ---------- ---------- ---------- 6361 ---------- ---------- ---------- ---------- ---------- ---------- 6421 ---------- ---------- ------>--- ---------- ---------- --ucg--|-- 6481 --uugaUCC- -(CACACU)G -|AGUGg--- ----(ca-uu uaa---)--- ----aggaa| 6541 |---AGAC-U A--AAAGAAG -GGGA-AGGA ACUCGGCAAA ---------- ---------- 6601 ---------- ---------- ---------- ---------- ---------- ---------- 6661 ---------- ---------- ---------- ---------- ---------- ---------- 6721 ---------- ---------- ---------- ---------- ---------- ---------- 6781 ------(--- )--------- cacAAGCC|U GC---CUG-U UU(ACCAA)A AA-CAUG--C 6841 CUCCUG|C-- ---------- ---------- (-agcauaaa ------)--- ---------- 6901 ------GUA- UAG-GAGGUC CAGCCU<--- ---------- ---------- ---------- 6961 ---------- ---------- -------->G CC-CA-GU|G AC-------- ---------- 7021 ---------- --(------- ---------- ---------- ---------- ---------- 7081 ---------- ---------- --------ua cgg)------ ---------- ---------| 7141 ---GUUC-AA C-|GG-C|cC -GCGGU-(AU -AUUG)ACCG UG|C(AAA)- GG-UAGCGCA 7201 AUC-AC-U-U |GUCUUU(-U AAAU-)AGAG AC|CU-GUAU GAAUGGCUAG A-CGAGGGCU 7261 UA-------- ---------- -------ACU GUCUCCCCCC UCCA-GU-CA ----GUGAAA 7321 UU|G|AUCUA UC-CG(U-GC AGAAG)CGUA UAU-----AU --UACGAGAC GAGAAG-ACC 7381 CUUUGG-|-A GCUUA--AGG UA|cagaauu ca-------| <--------- ---------- 7441 ---------- ---------- --->------ ---------- ---------- ---------- 7501 ---------- ---------- ---------- --<-gccacg uuaagcaacu ---------- 7561 ---------- ccaugagaag caagaacuua gugg------ ---------- ---------- 7621 ---------- ---------- ---------> --(------- -)-------- ---------- 7681 ---------- -------|-- ---------- ---------- ---------- ---------- 7741 -----(---- ----)----- ---------- ---------- ---------- --------<- 7801 ---------- ---------- ---------- ---------- ---------- ---------- 7861 ---------- ---------- ---------- ---------- ---------- ---------- 7921 ---------- ---------- ---------- ---------- ---------- ---------- 7981 ---------- ---------- ---------- ---------- ---------- ---------- 8041 ---------- ---------- ---------- ---------- ---------- ---------- 8101 ---------- ---------- ----->---- -ccgu-gaag uu----u-uc auUCGGUUG( 8161 GGG)CG-AC- C|ACGGAG(- --------GA AAAGCAAGC- )CUCC-GA|G |u|gg---|< 8221 ---------- ---------- ---------- ---------- ---------- ---------- 8281 ---------- ---------- ---------- ---------- ---------- ----acuggg 8341 ccaacac-cc cua------- ---------- ---------- ---------- ->-------- 8401 ---------- ---------- ---------- ---------- ---------- ---------- 8461 ---------- ---------- ---------- ---------- ---------- ---------- 8521 ---------- ---------- ---------- ---------- ---------- ---------- 8581 ---------- ---------- ---------- ---------- ---------- ---------- 8641 ---------- ---------- ---------- ---------- ---------- ---------- 8701 ---------- ---------- ---------- ---------- --|------- ---------- 8761 --------aa gccaa-aag( -agacau--- )cuuua-agc -cgcagaaua ucug------ 8821 ---------- ---------- ---------- ---------- ---------- --------ac 8881 c|---aauaa GGAUC-cggc u--------- ---------- ---(------ ---------- 8941 ---------- ---------- ---------- ---------- --------aa aa)--|--ag 9001 ccgAUCAAC- |GGA-CCAAG UUACCC|UAG G|GAUAACAG |C-GCA-A-U CCUCUCCCAG 9061 AG(C--CCAU )AUCGACGAG --GGGGUUUA CG-ACCUCGA UGUU|GG--A U|C|AGGAC| 9121 AU-CC-UGGU GG-UG(--CA -GC)CGCUAU UAAG-GGU|U CGUU(UGUUC )AACGA-UUA 9181 A--AGUCCU- --AC~~~~~~ ~~~~~~~~~~ ~~|~~~~(~~ ~~)~~~~~~~ ~~~~~~~~~~ 9241 ~~|~~~~~~~ ~~|~|<~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9301 >~~~~~~~~~ ~~~~~~~~~~ ~~~-~~~~~~ ~~~~(~~~~~ ~~(~~~~~)~ ~~~~~)~~~~ 9361 ~~~~~-<~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~>~ ~~~~~~~~~~ ~~~~~~~~~~ 9421 ~|~~~~~~~~ (~~~~~)<~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~> 9541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9601 ~~~~~~~~~~ ~~~~~~~~~~ (~~~~~~~~~ ~~~~~)~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9661 ~~~~~~~~~~ ~~~~~~~<~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~>~~| ~~~~~~(~~~ )~~~~~~~~~ ~~~~~~~|~~ 9961 ~~~(~~~~~~ ~~~)~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10021 ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~~~ 10141 ~~~~~~~~~~ ~~~~~~~~~~ ~)~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10201 ~~~~~~~~~~ ~|~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10321 ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ||||| // LOCUS mt.L.chr.4 10775 bp RNA RNA 11-JAN-191 DEFINITION Mitochondrion Luxilus chrysocephalus. ACCESSION No information KEYWORDS No information. SOURCE Mitochondrion Luxilus chrysocephalus. ORGANISM Mitochondrion Luxilus chrysocephalus. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 10775) Corresponding GenBank entry: U09474 LOCUS LCU09474 2006 bp DNA VRT 22-MAY-1994 DEFINITION Luxilus chrysocephalus chrysocephalus Fourche A Du Clos Cr., Ste. Genevieve, MO, USA, mitochondrion 12S rRNA and 16S rRNA genes, partial sequence, and tRNA-Val gene, complete sequence. ACCESSION U09474 KEYWORDS . SOURCE striped shiner ORGANISM Mitochondrion Luxilus chrysocephalus Eukaryotae; Hyperchondria; Eukaryote crown group; Metazoa/Eumycota group; Metazoa; Eumetazoa; Bilateria; Coelomata; Deuterostomia; Chordata; Vertebrata; Gnathostomata; Osteichthyes; Actinopterygii; Actinopteri; Holostei; Halecostomi; Teleostei; Elopocephala; Clupeocephala; Euteleostei; Ostariophysi; Otophysi; Cypriniformes; Cyprinoidea; Cyprinidae; Luxilus. REFERENCE 1 (bases 1 to 2006) AUTHORS Duvernell,D.D. and Aspinwall,N. TITLE Introgression of Luxilus cornutus mtDNA into allopatric populations of Luxilus chrysocephalus (Teleostei:Cyprinidae) in Missouri and Arkansas JOURNAL Unpublished STANDARD full automatic REFERENCE 2 (bases 1 to 2006) AUTHORS Aspinwall,N. TITLE Direct Submission JOURNAL Submitted (06-MAY-1994) Nevin Aspinwall, Saint Louis University, Biology, 3507 Laclede, St. Louis, MO 63103-2010, USA STANDARD full automatic COMMENT NCBI gi: 488583 FEATURES Location/Qualifiers rRNA <1..470 /product="12S rRNA" tRNA 470..540 /product="tRNA-Val" rRNA 541..>2006 /product="16S rRNA" source 1..2006 /mitochondrion /organism="Luxilus chrysocephalus" /sub_species="chrysocephalus" /isolate="Collection site: Fourche A Du Clos Cr., Ste. Genevieve, MO, USA" /haplotype="CORN4" /tissue_type="muscle, skeletal" /dev_stage="adult" /note="mtDNA sequence is an introgressed haplotype from L. cornutus" BASE COUNT 662 a 470 c 451 g 423 t ORIGIN BASE COUNT 502 a 333 c 317 g 314 t 9309 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~G C--------- ----caacca 301 |GCU--AGC| UUa------- -|-------- ---------- ---------| -----(---- 361 ---------) -|-------- -------|-- -------(-- ---------- ---------- 421 -------)-- ---------- ---------- ---------- ---------- -----(---- 481 )---|----- --(-----)- ---------- ---------- ---------- -(------)- 541 ---------- ---------- ---- ---------- |-----ACAA 841 CUA(ACCA)U UUU------- ---------- ---------- ---------- ---------- 901 ------(--- --)------- |uac-cugA- -GUAU-G(-- gaga)CAGAA -Aagg-u--- 961 -------<-- --ucacc--- ---------- ---------- ---------- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- --->------ 1201 ---------- ---------- ---------- ---------< ---------- ---------- 1261 ---------- ---------- ---------> (------)-- ---------- ---|-(---) 1321 -------(-- -----)---- ---------- ---------- ---------- --<------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- >--------- ------(--- ---------- 1561 -------)-- ---------- ---------- -(-------) ---------- ---------- 1621 ---------u c-AA-GCGAU AGAA-AA--- ---AGUACC( -GCAA-)GGG ---AAA-GC- 1681 ugaaagagaa augaaacaac ccaua----- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- -----uaa-G C-AAAA ACAAAG---- --------<- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------> (--acuaaac 2041 --)------- -----CUU-G UACCUU(UU- GCAUC)AUGA |UUU-AGCCA GUacc--cu- 2101 caagcaaag- ---------- -------(-- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- -)-------- ---------- 2521 ----(----- )-----<--- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- agau->---- --(------) ---------- ---------- -cuuuaguuu 2701 gau-acCCCG AA-ACCAG-G UG-AGCUACC CCG-AGA-CA GCCU------ ---------- 2761 -(-------- ---------- ---------- ---------a uauaauuua) ---------- 2821 -GGGCUAA-C CC-GUCUCU( GUGGCAA-A) AGAG-UGGGA --AGAGCUC- CGGGUAG-AA 2881 GU(G-ACAG) ACC-UACC-G A-ACCUGGUG AUAGCU-GGU UGCCU--AAG AA-AUG-AA- 2941 (-uag-)-UU CG----CUCG CACA<----- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ------->-- ---|------ 3061 -|------|- ---------- ---------- --------(- --------)< cccuuaauca 3121 agaa-----a cacaucacca agauauu--- ---------- ---------- ---------- 3181 ----auggaa ac-------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---->----- ---------- 3301 ---------- ---------- ----|----- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ------GU-A -CGAG-AGUU AGUUG--AA- GG-gg(-GUA 3481 CAG)--CCUU UA-AC----- -aAAGG(AUA -CAA)CCU-u uacag-g-ag -ga-UAA--- 3541 --agaucaua cuaaaua-a- aauaua---- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ------cugu u<-------- ---------- ---------- 3721 ---------- ---------- ---------- ---------- -->CUAGU-G GGC(CUGAAA 3781 GC-A)-GCCA -UCUA|A(A- CA)-|GAAAG C(--GUUAAA )GC|-ucgg- acag--<--- 3841 --aaggaaau uuauuauccg auaaaa---- ---------- ---------- ---------- 3901 ->-------- -------|-- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- ---------- 4021 ---------- ---------- ---------- ---------- ---------- ---------- 4081 -------|uc u-ac--ucc| cuac-ug|-- ---------- ---------- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- ---------- ---------- ---------- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------u aUUAG--C|- CA-ACCAUG- ---------- 4501 ---------- ---------- (-cca---)< ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ------->-- ---------- ---------| CAUGG-UGAG ACUAUGC-UA 4681 A-|AUGAGUA -ACAA-GAA- ---------- (-gacuuga- ---------- ---------- 4741 ---------- -----)---- ------|ucu u-cucc-gCA Caa--gugua a|-----aca 4801 gauc----ga ---------- ----(---cu aa)c-c|--g cuggaa---- ---------- 4861 ---uuuaa-- -cga------ ---------- -------(-- ---------- ------)<-- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 >--------- ---------- ---------- ----(----- ---------- ---------- 5041 ---------- ---------- ----)----- |-----|--- ---------- |--<------ 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ---------- ---------- 5221 ---------- ---------- ---------- ---------- ---------- ---------- 5281 ---------- ---------- ---------- ---------- ---------- ---------- 5341 ---------- ---------- ---------- ---------- ---------- ---------- 5401 ---------- ---------- ------->-- ---------- ---------- ---------- 5461 -----(---- ------)--- ---|------ --------|- ---------- -(-----)-- 5521 |--------- ---------- ---------- -----(---- )--------- ---------- 5581 --<------- ---------- ---------- ---------- ---------- ---------- 5641 ---------- ---------- ------->-- ---------- ---------- ---<------ 5701 ---------- gcccaaccaa agaggcauug ugaauaauau aaaccucaag aagaacucac 5761 aauuaaguaa ---------- ---------- ---------- ---------- ---------- 5821 ---------- ---------- ---------- ---------- ---------- ---------- 5881 ---------- ---------- ---------- ---------- ---------- ---------- 5941 ---------- ---------- ---------- ---------- ---------- ---------- 6001 ---------- ---------- ---------- ---------- ---------- ---------- 6061 ---------- ---------- ---------- ---------- ---------- ---------- 6121 ---------- ---------- ---------- ---------- ---------- ---------- 6181 ---------- ---------- ---------- ---------- ---------- ---------- 6241 ---------- ---------- ---------- ---------- ---------- ---------- 6301 ---------- ---------- ---------- ---------- ---------- ---------- 6361 ---------- ---------- ---------- ---------- ---------- ---------- 6421 ---------- ---------- ------>--- ---------- ---------- --ucg--|-- 6481 --uugauCC- -(CACACU)G G|AGUGg--- ----(ca-uu uaa---)--- ----aggaa| 6541 |---AGAC-U A--AAAGAAG -GGGA-AGGA ACUCGGCAAA ---------- ---------- 6601 ---------- ---------- ---------- ---------- ---------- ---------- 6661 ---------- ---------- ---------- ---------- ---------- ---------- 6721 ---------- ---------- ---------- ---------- ---------- ---------- 6781 ------(--- )--------- cacAAGCC|U GC---CUG-U UU(ACCAA)A AA-CAUG--C 6841 CUCCUG|C-- ---------- ---------- (-agcaaaaa ------)--- ---------- 6901 ------GUA- UAG-GAGGUC CAGCCU<--- ---------- ---------- ---------- 6961 ---------- ---------- -------->G CC-CA-GU|G AC-------- ---------- 7021 ---------- --(------- ---------- ---------- ---------- ---------- 7081 ---------- ---------- --------ua cgg)------ ---------- ---------| 7141 ---GUUC-AA C-|GG-C|cC -GCGGU-(AU -AUUG)ACCG UG|C(AAA)- GG-AAGCGCA 7201 AUC-AC-U-U |GUCUUU(-U AAAU-)AGAG AC|CU-GUAU GAAUGGCUAG A-CGAGGGCU 7261 UA-------- ---------- -------ACU GUCUCCCCCC UCCA-GU-CA ----GUGAAA 7321 UU|G|AUCUA UC-CG(U-GC AGAAG)CGUA UAU-----AU --UACGAGAC GAGAAG-ACC 7381 CUUUGG-|-A GCUUA--AGG UA|caaaauu ca-------| <--------- ---------- 7441 ---------- ---------- --->------ ---------- ---------- ---------- 7501 ---------- ---------- ---------- --<-gccacg uuaagcaacu ccuua-agaa 7561 ---------- ---------g caagaacuua augg------ ---------- ---------- 7621 ---------- ---------- ---------> --(------- -)-------- ---------- 7681 ---------- -------|-- ---------- ---------- ---------- ---------- 7741 -----(---- ----)----- ---------- ---------- ---------- --------<- 7801 ---------- ---------- ---------- ---------- ---------- ---------- 7861 ---------- ---------- ---------- ---------- ---------- ---------- 7921 ---------- ---------- ---------- ---------- ---------- ---------- 7981 ---------- ---------- ---------- ---------- ---------- ---------- 8041 ---------- ---------- ---------- ---------- ---------- ---------- 8101 ---------- ---------- ----->---- -ccau-gaag uu----u-uc auUCGGUUG( 8161 GGG)CG-AC- C|ACGGAG(- --------GA AAAGCAAGC- )CUCC-GA|G |u|gg---|< 8221 ---------- ---------- ---------- ---------- ---------- ---------- 8281 ---------- ---------- ---------- ---------- ---------- ----acuggg 8341 ccaacac-cc cua------- ---------- ---------- ---------- ->-------- 8401 ---------- ---------- ---------- ---------- ---------- ---------- 8461 ---------- ---------- ---------- ---------- ---------- ---------- 8521 ---------- ---------- ---------- ---------- ---------- ---------- 8581 ---------- ---------- ---------- ---------- ---------- ---------- 8641 ---------- ---------- ---------- ---------- ---------- ---------- 8701 ---------- ---------- ---------- ---------- --|------- ---------- 8761 --------aa gccaa-aag( -agacau--- )cuuua-agc -cgcagaaua ucug------ 8821 ---------- ---------- ---------- ---------- ---------- --------ac 8881 c|---aauaa GGAUC-cggc u--------- ---------- ---(------ ---------- 8941 ---------- ---------- ---------- ---------- --------aa aa)--|--ag 9001 ccgAUCAAC- |GGA-CCAAG UUACCC|UAG G|GAUAACAG |C-GCA-A-U CCUCUCCCAG 9061 AG(C--CCAU )AUCGACGAG --GGGGUUUA CG-ACCUCGA UGUU|GG--A U|C|AGGAC| 9121 AU-CC-UGGU GG-UG(--CA -GC)CGCUAU UAAG-GGU|U CGUU(UGUUC )AACGA-UUA 9181 A--AGUCCU- --AC~~~~~~ ~~~~~~~~~~ ~~|~~~~(~~ ~~)~~~~~~~ ~~~~~~~~~~ 9241 ~~|~~~~~~~ ~~|~|<~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9301 >~~~~~~~~~ ~~~~~~~~~~ ~~~-~~~~~~ ~~~~(~~~~~ ~~(~~~~~)~ ~~~~~)~~~~ 9361 ~~~~~-<~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~>~ ~~~~~~~~~~ ~~~~~~~~~~ 9421 ~|~~~~~~~~ (~~~~~)<~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~> 9541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9601 ~~~~~~~~~~ ~~~~~~~~~~ (~~~~~~~~~ ~~~~~)~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9661 ~~~~~~~~~~ ~~~~~~~<~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~>~~| ~~~~~~(~~~ )~~~~~~~~~ ~~~~~~~|~~ 9961 ~~~(~~~~~~ ~~~)~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10021 ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~~~ 10141 ~~~~~~~~~~ ~~~~~~~~~~ ~)~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10201 ~~~~~~~~~~ ~|~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10321 ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ||||| // LOCUS mt.L.cor.1 10775 bp RNA RNA 11-JAN-191 DEFINITION Mitochondrion Luxilus cornutus. ACCESSION No information KEYWORDS No information. SOURCE Mitochondrion Luxilus cornutus. ORGANISM Mitochondrion Luxilus cornutus. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 10775) Corresponding GenBank entry: U09470 LOCUS LCU09470 2004 bp DNA VRT 22-MAY-1994 DEFINITION Luxilus cornutus Yellow R., Chippewa Co., WI, USA, mitochondrion 12S rRNA and 16S rRNA genes, partial sequence, and tRNA-Val gene, complete sequence. ACCESSION U09470 KEYWORDS . SOURCE common shiner ORGANISM Mitochondrion Luxilus cornutus Eukaryotae; Hyperchondria; Eukaryote crown group; Metazoa/Eumycota group; Metazoa; Eumetazoa; Bilateria; Coelomata; Deuterostomia; Chordata; Vertebrata; Gnathostomata; Osteichthyes; Actinopterygii; Actinopteri; Holostei; Halecostomi; Teleostei; Elopocephala; Clupeocephala; Euteleostei; Ostariophysi; Otophysi; Cypriniformes; Cyprinoidea; Cyprinidae; Luxilus. REFERENCE 1 (bases 1 to 2004) AUTHORS Duvernell,D.D. and Aspinwall,N. TITLE Introgression of Luxilus cornutus mtDNA into allopatric populations of Luxilus chrysocephalus (Teleostei:Cyprinidae) in Missouri and Arkansas JOURNAL Unpublished STANDARD full automatic REFERENCE 2 (bases 1 to 2004) AUTHORS Aspinwall,N. TITLE Direct Submission JOURNAL Submitted (06-MAY-1994) Nevin Aspinwall, Saint Louis University, Biology, 3507 Laclede, St. Louis, MO 63103-2010, USA STANDARD full automatic COMMENT NCBI gi: 488579 FEATURES Location/Qualifiers rRNA <1..469 /product="12S rRNA" tRNA 470..540 /product="tRNA-Val" rRNA 541..>2004 /product="16S rRNA" source 1..2004 /mitochondrion /organism="Luxilus cornutus" /isolate="Collection site: Yellow R., Chippewa Co., WI, USA" /haplotype="CORN1" /tissue_type="muscle, skeletal" /dev_stage="adult" BASE COUNT 660 a 469 c 451 g 424 t ORIGIN BASE COUNT 500 a 332 c 317 g 315 t 9311 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~G C--------- ----caacca 301 |GCU--AGC| UUa------- -|-------- ---------- ---------| -----(---- 361 ---------) -|-------- -------|-- -------(-- ---------- ---------- 421 -------)-- ---------- ---------- ---------- ---------- -----(---- 481 )---|----- --(-----)- ---------- ---------- ---------- -(------)- 541 ---------- ---------- ---- ---------- |-----ACAA 841 CUA(ACCA)U UUU------- ---------- ---------- ---------- ---------- 901 ------(--- --)------- |uac-cugA- -GUAU-G(-- gaga)CAGAA -Aagg-u--- 961 -------<-- --ucacc--- ---------- ---------- ---------- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- --->------ 1201 ---------- ---------- ---------- ---------< ---------- ---------- 1261 ---------- ---------- ---------> (------)-- ---------- ---|-(---) 1321 -------(-- -----)---- ---------- ---------- ---------- --<------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- >--------- ------(--- ---------- 1561 -------)-- ---------- ---------- -(-------) ---------- ---------- 1621 ---------u c-AA-GCGAU AGAA-AA--- ---AGUACC( -GCAA-)GGG ---AAA-GC- 1681 ugaaagagaa augaaacaac ccaua----- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- -----uaa-G C-AAAA ACAAAG---- --------<- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------> (--acuaaac 2041 --)------- -----CUU-G UACCUU(UU- GCAUC)AUGA |UUU-AGCCA GUacc--cu- 2101 caagcaaag- ---------- -------(-- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- -)-------- ---------- 2521 ----(----- )-----<--- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- agau->---- --(------) ---------- ---------- -cuuuaguuu 2701 gau-acCCCG AA-ACCAG-G UG-AGCUACC CCG-AGA-CA GCCU------ ---------- 2761 -(-------- ---------- ---------- ---------a uauaauuua) ---------- 2821 -GGGCUAA-C CC-GUCUCU( GUGGCAA-A) AGAG-UGGGA --AGAGCUC- CGGGUAG-AA 2881 GU(G-ACAG) ACC-UACC-G A-ACCUGGUG AUAGCU-GGU UGCCU--AGG AA-AUG-AA- 2941 (-uag-)-UU CG----CUCG CACA<----- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ------->-- ---|------ 3061 -|------|- ---------- ---------- --------(- --------)< cccuuaauca 3121 agaa-----a cacaucacca agauauu--- ---------- ---------- ---------- 3181 ----auggaa ac-------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---->----- ---------- 3301 ---------- ---------- ----|----- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ------GU-A -CGAG-AGUU AGUUG--AA- GG-gg(-GUA 3481 CAG)--CCUU UA-AC----- -aAAGG(AUA -CAA)CCU-u uacag-g-ag -ga-UAA--- 3541 --agaucaua cuaaaua-a- aauaua---- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ------cugu u<-------- ---------- ---------- 3721 ---------- ---------- ---------- ---------- -->CUAGU-G GGC(CUGAAA 3781 GC-A)-GCCA -UCUA|A(A- CA)-|GAAAG C(--GUUAAA )GC|-ucgg- acag--<--- 3841 --aaggaaau uuauuauccg auaaaa---- ---------- ---------- ---------- 3901 ->-------- -------|-- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- ---------- 4021 ---------- ---------- ---------- ---------- ---------- ---------- 4081 -------|uc u-ac--ucc| cuac-ug|-- ---------- ---------- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- ---------- ---------- ---------- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------u aUUAG--C|- CA-ACCAUG- ---------- 4501 ---------- ---------- (-cua---)< ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ------->-- ---------- ---------| CAUGG-UGAG ACUAUGC-UA 4681 A-|AUGAGUA -ACAA-GAA- ---------- (-gacuuga- ---------- ---------- 4741 ---------- -----)---- ------|ucu u-cucc-gCA Caa--gugua a|-----aca 4801 gauc----ga ---------- ----(---cu aa)c-c|--a cuggaa---- ---------- 4861 ---uuuaa-- -cga------ ---------- -------(-- ---------- ------)<-- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 >--------- ---------- ---------- ----(----- ---------- ---------- 5041 ---------- ---------- ----)----- |-----|--- ---------- |--<------ 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ---------- ---------- 5221 ---------- ---------- ---------- ---------- ---------- ---------- 5281 ---------- ---------- ---------- ---------- ---------- ---------- 5341 ---------- ---------- ---------- ---------- ---------- ---------- 5401 ---------- ---------- ------->-- ---------- ---------- ---------- 5461 -----(---- ------)--- ---|------ --------|- ---------- -(-----)-- 5521 |--------- ---------- ---------- -----(---- )--------- ---------- 5581 --<------- ---------- ---------- ---------- ---------- ---------- 5641 ---------- ---------- ------->-- ---------- ---------- ---<------ 5701 ---------- gcccaaccaa agaggcauug ugaauaauau aaaccucaag aagaacucac 5761 aauuaaguaa ---------- ---------- ---------- ---------- ---------- 5821 ---------- ---------- ---------- ---------- ---------- ---------- 5881 ---------- ---------- ---------- ---------- ---------- ---------- 5941 ---------- ---------- ---------- ---------- ---------- ---------- 6001 ---------- ---------- ---------- ---------- ---------- ---------- 6061 ---------- ---------- ---------- ---------- ---------- ---------- 6121 ---------- ---------- ---------- ---------- ---------- ---------- 6181 ---------- ---------- ---------- ---------- ---------- ---------- 6241 ---------- ---------- ---------- ---------- ---------- ---------- 6301 ---------- ---------- ---------- ---------- ---------- ---------- 6361 ---------- ---------- ---------- ---------- ---------- ---------- 6421 ---------- ---------- ------>--- ---------- ---------- --ucg--|-- 6481 --uugauCC- -(CACACU)G G|AGUGg--- ----(ca-uu uaa---)--- ----aggaa| 6541 |---AGAC-U A--AAAGAAG -GGGA-AGGA ACUCGGCAAA ---------- ---------- 6601 ---------- ---------- ---------- ---------- ---------- ---------- 6661 ---------- ---------- ---------- ---------- ---------- ---------- 6721 ---------- ---------- ---------- ---------- ---------- ---------- 6781 ------(--- )--------- cacAAGCC|U GC---CUG-U UU(ACCAA)A AA-CAUG--C 6841 CUCCUG|C-- ---------- ---------- (-agcaaaaa ------)--- ---------- 6901 ------GUA- UAG-GAGGUC CAGCCU<--- ---------- ---------- ---------- 6961 ---------- ---------- -------->G CC-CA-GU|G AC-------- ---------- 7021 ---------- --(------- ---------- ---------- ---------- ---------- 7081 ---------- ---------- --------ua cgg)------ ---------- ---------| 7141 ---GUUC-AA C-|GG-C|cC -GCGGU-(AU -AUUG)ACCG UG|C(AAA)- GG-UAGCGCA 7201 AUC-AC-U-U |GUCUUU(-U AAAU-)AGAG AC|CU-GUAU GAAUGGCUAG A-CGAGGGCU 7261 UA-------- ---------- -------ACU GUCUCCCCCC UCCA-GU-CA ----GUGAAA 7321 UU|G|AUCUA UC-CG(U-GC AGAAG)CGUA UAU-----AU --UACGAGAC GAGAAG-ACC 7381 CUUUGG-|-A GCUUA--AGG UA|caaaauu ca-------| <--------- ---------- 7441 ---------- ---------- --->------ ---------- ---------- ---------- 7501 ---------- ---------- ---------- --<-gccacg uuaagcaacu ccuua-agaa 7561 ---------- ---------g caagaacuua augg------ ---------- ---------- 7621 ---------- ---------- ---------> --(------- -)-------- ---------- 7681 ---------- -------|-- ---------- ---------- ---------- ---------- 7741 -----(---- ----)----- ---------- ---------- ---------- --------<- 7801 ---------- ---------- ---------- ---------- ---------- ---------- 7861 ---------- ---------- ---------- ---------- ---------- ---------- 7921 ---------- ---------- ---------- ---------- ---------- ---------- 7981 ---------- ---------- ---------- ---------- ---------- ---------- 8041 ---------- ---------- ---------- ---------- ---------- ---------- 8101 ---------- ---------- ----->---- -ccau-gaag uu----u-uc auUCGGUUG( 8161 GGG)CG-AC- C|ACGGAG(- --------GA AAAGCAAGC- )CUCC-GA|G |u|gg---|< 8221 ---------- ---------- ---------- ---------- ---------- ---------- 8281 ---------- ---------- ---------- ---------- ---------- ----acuggg 8341 ccaacac-cc cua------- ---------- ---------- ---------- ->-------- 8401 ---------- ---------- ---------- ---------- ---------- ---------- 8461 ---------- ---------- ---------- ---------- ---------- ---------- 8521 ---------- ---------- ---------- ---------- ---------- ---------- 8581 ---------- ---------- ---------- ---------- ---------- ---------- 8641 ---------- ---------- ---------- ---------- ---------- ---------- 8701 ---------- ---------- ---------- ---------- --|------- ---------- 8761 --------aa gccaa-aag( -agacau--- )cuuua-agc -cgcagaaua ucug------ 8821 ---------- ---------- ---------- ---------- ---------- --------ac 8881 c|---aauaa GGAUC-cggc u--------- ---------- ---(------ ---------- 8941 ---------- ---------- ---------- ---------- --------aa aa)--|--ag 9001 ccgAUCAAC- |GGA-CCAAG UUACCC|UAG G|GAUAACAG |C-GCA-A-U CCUCUCCCAG 9061 AG(C--CCAU )AUCGACGAG --GGGGUUUA CG-ACCUCGA UGUU|GG--A U|C|AGGAC| 9121 AU-CC-UGGU GG-UG(--CA -GC)CGCUAU UAAG-GGU|U CGUU(UGUUC )AACGA-UUA 9181 A--AGUCCU- --AC~~~~~~ ~~~~~~~~~~ ~~|~~~~(~~ ~~)~~~~~~~ ~~~~~~~~~~ 9241 ~~|~~~~~~~ ~~|~|<~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9301 >~~~~~~~~~ ~~~~~~~~~~ ~~~-~~~~~~ ~~~~(~~~~~ ~~(~~~~~)~ ~~~~~)~~~~ 9361 ~~~~~-<~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~>~ ~~~~~~~~~~ ~~~~~~~~~~ 9421 ~|~~~~~~~~ (~~~~~)<~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~> 9541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9601 ~~~~~~~~~~ ~~~~~~~~~~ (~~~~~~~~~ ~~~~~)~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9661 ~~~~~~~~~~ ~~~~~~~<~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~>~~| ~~~~~~(~~~ )~~~~~~~~~ ~~~~~~~|~~ 9961 ~~~(~~~~~~ ~~~)~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10021 ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~~~ 10141 ~~~~~~~~~~ ~~~~~~~~~~ ~)~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10201 ~~~~~~~~~~ ~|~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10321 ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ||||| // LOCUS mt.L.cor.2 10775 bp RNA RNA 11-JAN-191 DEFINITION Luxilus cornutus. ACCESSION No information KEYWORDS No information. SOURCE Luxilus cornutus. ORGANISM Luxilus cornutus. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 10775) Corresponding GenBank entry: U09471 LOCUS LCU09471 2004 bp DNA VRT 22-MAY-1994 DEFINITION Luxilus cornutus Perche Cr., Boone Co., MO, USA, mitochondrion 12S rRNA and 16S rRNA genes, partial sequence, and tRNA-Val gene, complete sequence. ACCESSION U09471 KEYWORDS . SOURCE common shiner ORGANISM Mitochondrion Luxilus cornutus Eukaryotae; Hyperchondria; Eukaryote crown group; Metazoa/Eumycota group; Metazoa; Eumetazoa; Bilateria; Coelomata; Deuterostomia; Chordata; Vertebrata; Gnathostomata; Osteichthyes; Actinopterygii; Actinopteri; Holostei; Halecostomi; Teleostei; Elopocephala; Clupeocephala; Euteleostei; Ostariophysi; Otophysi; Cypriniformes; Cyprinoidea; Cyprinidae; Luxilus. REFERENCE 1 (bases 1 to 2004) AUTHORS Duvernell,D.D. and Aspinwall,N. TITLE Introgression of Luxilus cornutus mtDNA into allopatric populations of Luxilus chrysocephalus (Teleostei:Cyprinidae) in Missouri and Arkansas JOURNAL Unpublished STANDARD full automatic REFERENCE 2 (bases 1 to 2004) AUTHORS Aspinwall,N. TITLE Direct Submission JOURNAL Submitted (06-MAY-1994) Nevin Aspinwall, Saint Louis University, Biology, 3507 Laclede, St. Louis, MO 63103-2010, USA STANDARD full automatic COMMENT NCBI gi: 488580 FEATURES Location/Qualifiers rRNA <1..470 /product="12S rRNA" tRNA 470..540 /product="tRNA-Val" rRNA 541..>2004 /product="16S rRNA" source 1..2004 /mitochondrion /organism="Luxilus cornutus" /isolate="Collection site: Perche Cr., Boone Co., MO, USA" /haplotype="CORN2" /tissue_type="muscle, skeletal" /dev_stage="adult" BASE COUNT 658 a 468 c 453 g 425 t ORIGIN BASE COUNT 498 a 331 c 319 g 316 t 9311 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~G C--------- ----caacca 301 |GCU--AGC| UUa------- -|-------- ---------- ---------| -----(---- 361 ---------) -|-------- -------|-- -------(-- ---------- ---------- 421 -------)-- ---------- ---------- ---------- ---------- -----(---- 481 )---|----- --(-----)- ---------- ---------- ---------- -(------)- 541 ---------- ---------- ---- ---------- |-----ACAA 841 CUA(ACCA)U UUU------- ---------- ---------- ---------- ---------- 901 ------(--- --)------- |uac-cugA- -GUAU-G(-- gaga)CAGAA -Aagg-u--- 961 -------<-- --ucacc--- ---------- ---------- ---------- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- --->------ 1201 ---------- ---------- ---------- ---------< ---------- ---------- 1261 ---------- ---------- ---------> (------)-- ---------- ---|-(---) 1321 -------(-- -----)---- ---------- ---------- ---------- --<------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- >--------- ------(--- ---------- 1561 -------)-- ---------- ---------- -(-------) ---------- ---------- 1621 ---------u c-AA-GCGAU AGAA-AA--- ---AGUACC( -GCAA-)GGG ---AAA-GC- 1681 ugaaagagaa augaaacaac ccaua----- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- -----uaa-G C-AAAA ACAAAG---- --------<- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------> (--acuaaac 2041 --)------- -----CUU-G UACCUU(UU- GCAUC)AUGA |UUU-AGCCA GUacc--cu- 2101 caagcaaag- ---------- -------(-- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- -)-------- ---------- 2521 ----(----- )-----<--- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- agau->---- --(------) ---------- ---------- -cuuuaguuu 2701 gau-acCCCG AA-ACCAG-G UG-AGCUACC CCG-AGA-CA GCCU------ ---------- 2761 -(-------- ---------- ---------- ---------a uauaauuua) ---------- 2821 -GGGCUAA-C CC-GUCUCU( GUGGCAA-A) AGAG-UGGGA --AGAGCUC- CGGGUAG-AA 2881 GU(G-ACAG) ACC-UACC-G A-ACCUGGUG AUAGCU-GGU UGCCU--AAG AA-AUG-AA- 2941 (-uag-)-UU CG----CUCG CACA<----- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ------->-- ---|------ 3061 -|------|- ---------- ---------- --------(- --------)< cccuuaauca 3121 agaa-----a cacaucauca agauauu--- ---------- ---------- ---------- 3181 ----auggaa ac-------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---->----- ---------- 3301 ---------- ---------- ----|----- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ------GU-A -CGAG-AGUU AGUUG--AA- GG-gg(-GUA 3481 CAG)--CCUU UA-AC----- -aAAGG(AUA -CAA)CCU-u uacag-g-ag -ga-UAA--- 3541 --agaucaua cuaagua-a- aauaua---- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ------cugu u<-------- ---------- ---------- 3721 ---------- ---------- ---------- ---------- -->CUAGU-G GGC(CUGAAA 3781 GC-A)-GCCA -UCUA|A(A- CA)-|GAAAG C(--GUUAAA )GC|-ucgg- acag--<--- 3841 --aaggaaau uuauuauccg auaaaa---- ---------- ---------- ---------- 3901 ->-------- -------|-- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- ---------- 4021 ---------- ---------- ---------- ---------- ---------- ---------- 4081 -------|uc u-ac--ucc| cuac-ug|-- ---------- ---------- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- ---------- ---------- ---------- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------u aUUAG--C|- CA-ACCAUG- ---------- 4501 ---------- ---------- (-cua---)< ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ------->-- ---------- ---------| CAUGG-UGAG ACUAUGC-UA 4681 A-|AUGAGUA -ACAA-GAA- ---------- (-gacuuga- ---------- ---------- 4741 ---------- -----)---- ------|ucu u-cucc-gCA Caa--gugua a|-----aca 4801 gauc----ga ---------- ----(---cu aa)c-c|--g cuggaa---- ---------- 4861 ---uuuaa-- -cga------ ---------- -------(-- ---------- ------)<-- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 >--------- ---------- ---------- ----(----- ---------- ---------- 5041 ---------- ---------- ----)----- |-----|--- ---------- |--<------ 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ---------- ---------- 5221 ---------- ---------- ---------- ---------- ---------- ---------- 5281 ---------- ---------- ---------- ---------- ---------- ---------- 5341 ---------- ---------- ---------- ---------- ---------- ---------- 5401 ---------- ---------- ------->-- ---------- ---------- ---------- 5461 -----(---- ------)--- ---|------ --------|- ---------- -(-----)-- 5521 |--------- ---------- ---------- -----(---- )--------- ---------- 5581 --<------- ---------- ---------- ---------- ---------- ---------- 5641 ---------- ---------- ------->-- ---------- ---------- ---<------ 5701 -------gcc caaccaaaga ggcauuguga auaauauaaa ---ccucaag aagaacucac 5761 aauuaaguaa ---------- ---------- ---------- ---------- ---------- 5821 ---------- ---------- ---------- ---------- ---------- ---------- 5881 ---------- ---------- ---------- ---------- ---------- ---------- 5941 ---------- ---------- ---------- ---------- ---------- ---------- 6001 ---------- ---------- ---------- ---------- ---------- ---------- 6061 ---------- ---------- ---------- ---------- ---------- ---------- 6121 ---------- ---------- ---------- ---------- ---------- ---------- 6181 ---------- ---------- ---------- ---------- ---------- ---------- 6241 ---------- ---------- ---------- ---------- ---------- ---------- 6301 ---------- ---------- ---------- ---------- ---------- ---------- 6361 ---------- ---------- ---------- ---------- ---------- ---------- 6421 ---------- ---------- ------>--- ---------- ---------- --ucg--|-- 6481 --uugauCC- -(CACACU)G G|AGUGg--- ----(ca-uu uaa---)--- ----aggaa| 6541 |---AGAC-U A--AAAGAAG -GGGA-AGGA ACUCGGCAAA ---------- ---------- 6601 ---------- ---------- ---------- ---------- ---------- ---------- 6661 ---------- ---------- ---------- ---------- ---------- ---------- 6721 ---------- ---------- ---------- ---------- ---------- ---------- 6781 ------(--- )--------- cacAAGCC|U GC---CUG-U UU(ACCAA)A AA-CAUG--C 6841 CUCCUG|C-- ---------- ---------- (-agcauaaa ------)--- ---------- 6901 ------GUA- UAG-GAGGUC CAGCCU<--- ---------- ---------- ---------- 6961 ---------- ---------- -------->G CC-CA-GU|G AC-------- ---------- 7021 ---------- --(------- ---------- ---------- ---------- ---------- 7081 ---------- ---------- --------ua cgg)------ ---------- ---------| 7141 ---GUUC-AA C-|GG-C|cC -GCGGU-(AU -AUUG)ACCG UG|C(AAA)- GG-UAGCGCA 7201 AUC-AC-U-U |GUCUUU(-U AAAU-)AGAG AC|CU-GUAU GAAUGGCUAG A-CGAGGGCU 7261 UA-------- ---------- -------ACU GUCUCCCCCC UCCA-GU-CA ----GUGAAA 7321 UU|G|AUCUA UC-CG(U-GC AGAAG)CGUA UAU-----AU --UACGAGAC GAGAAG-ACC 7381 CUUUGG-|-A GCUUA--AGG UA|cagaauu ca-------| <--------- ---------- 7441 ---------- ---------- --->------ ---------- ---------- ---------- 7501 ---------- ---------- ---------- --<-gccacg uuaagcaacu ccaua-agaa 7561 ---------- ---------g caagaacuua augg------ ---------- ---------- 7621 ---------- ---------- ---------> --(------- -)-------- ---------- 7681 ---------- -------|-- ---------- ---------- ---------- ---------- 7741 -----(---- ----)----- ---------- ---------- ---------- --------<- 7801 ---------- ---------- ---------- ---------- ---------- ---------- 7861 ---------- ---------- ---------- ---------- ---------- ---------- 7921 ---------- ---------- ---------- ---------- ---------- ---------- 7981 ---------- ---------- ---------- ---------- ---------- ---------- 8041 ---------- ---------- ---------- ---------- ---------- ---------- 8101 ---------- ---------- ----->---- -ccgu-gaag uu----u-uc auUCGGUUG( 8161 GGG)CG-AC- C|ACGGAG(- --------GA AAAGCAAGC- )CUCC-GA|G |u|gg---|< 8221 ---------- ---------- ---------- ---------- ---------- ---------- 8281 ---------- ---------- ---------- ---------- ---------- ----acuggg 8341 ccaacac-cc cua------- ---------- ---------- ---------- ->-------- 8401 ---------- ---------- ---------- ---------- ---------- ---------- 8461 ---------- ---------- ---------- ---------- ---------- ---------- 8521 ---------- ---------- ---------- ---------- ---------- ---------- 8581 ---------- ---------- ---------- ---------- ---------- ---------- 8641 ---------- ---------- ---------- ---------- ---------- ---------- 8701 ---------- ---------- ---------- ---------- --|------- ---------- 8761 --------aa gccaa-aag( -agacau--- )cuuua-agc -cgcagaaua ucug------ 8821 ---------- ---------- ---------- ---------- ---------- --------ac 8881 c|---aauaa GGAUC-cggc u--------- ---------- ---(------ ---------- 8941 ---------- ---------- ---------- ---------- --------aa aa)--|--ag 9001 ccgAUCAAC- |GGA-CCAAG UUACCC|UAG G|GAUAACAG |C-GCA-A-U CCUCUCCCAG 9061 AG(C--CCAU )AUCGACGAG --GGGGUUUA CG-ACCUCGA UGUU|GG--A U|C|AGGAC| 9121 AU-CC-UGGU GG-UG(--CA -GC)CGCUAU UAAG-GGU|U CGUU(UGUUC )AACGA-UUA 9181 A--AGUCCU- --AC~~~~~~ ~~~~~~~~~~ ~~|~~~~(~~ ~~)~~~~~~~ ~~~~~~~~~~ 9241 ~~|~~~~~~~ ~~|~|<~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9301 >~~~~~~~~~ ~~~~~~~~~~ ~~~-~~~~~~ ~~~~(~~~~~ ~~(~~~~~)~ ~~~~~)~~~~ 9361 ~~~~~-<~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~>~ ~~~~~~~~~~ ~~~~~~~~~~ 9421 ~|~~~~~~~~ (~~~~~)<~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~> 9541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9601 ~~~~~~~~~~ ~~~~~~~~~~ (~~~~~~~~~ ~~~~~)~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9661 ~~~~~~~~~~ ~~~~~~~<~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~>~~| ~~~~~~(~~~ )~~~~~~~~~ ~~~~~~~|~~ 9961 ~~~(~~~~~~ ~~~)~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10021 ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~~~ 10141 ~~~~~~~~~~ ~~~~~~~~~~ ~)~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10201 ~~~~~~~~~~ ~|~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10321 ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ||||| // LOCUS mt.M.marga 10775 bp RNA RNA 02-JUN-1998 DEFINITION Mitochondrion Margariscus margarita.; . ACCESSION AF0384 5 KEYWORDS . SOURCE Mitochondrion Margariscus margarita. ORGANISM Mitochondrion Margariscus margarita. REFERENCE 1 (bases 1 to 1755) AUTHORS Simons,A.M. and Mayden,R.L. TITLE Phoxinins (Actinopterygii: Cyprinidae) as Inferred from Mitochondrial 12S and 16S Ribosomal RNA Sequences Phylogenetic Relationships of the Western North American JOURNAL Mol. Phylogenet. Evol. (1998) In press STANDARD No information REFERENCE 2 (bases 1 to 1755) AUTHORS Simons,A.M. and Mayden,R.L. TITLE Direct Submission JOURNAL Submitted (15-DEC-1997) Department of Biological Sciences, The University of Alabama, Box 870344, Tuscaloosa, AL 35487-0344, USA STANDARD No information COMMENTS Sequence information (bases 1 to 10775) Corresponding GenBank entry: AF038485 BASE COUNT 591 a 383 c 361 g 367 t 9073 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~ug caaauuggau ua-cccugaG C--------- ----caacca 301 |gcu--agc| uu-------- -|-------- ---------- ---------| -----(---- 361 ---------) -|-------- -------|-- -------(-- ---------- ---------- 421 -------)-- ---------- ---------- ---------- ---------- -----(---- 481 )---|----- --(-----)- ---------- ---------- ---------- -(------)- 541 ---------- ---------- ---- ---------- |------aau 841 uAA(ACCA)U UUU------- ---------- ---------- ---------- --------uu 901 ------(--- --)------- |uac-cugA- -GUAU-G(-G GAGA)CAGAA -aaggu---- 961 -------<-- --ucaacc-- ---------- ---------- ---------- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- --->------ 1201 ---------- ---------- ---------- ---------< ---------- ---------- 1261 ---------- ---------- ---------> (------)-- ---------- ---|-(---) 1321 -------(-- -----)---- ---------- ---------- ---------- --<------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- >--------- ------(--- ---------- 1561 -------)-- ---------- ---------- -(-------) ---------- ---------- 1621 ---------- --AAAGCAAU AGAA-AA--- ---AGUACC( -GCAA-)GG- ---AAA-GC- 1681 ugaaagagaa augaaauaac ccaua----- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- -----uaa-G C-AAAA ACAAAG---- --------<- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------> (--acuaaac 2041 --)------- -----CUU-G UACCUU(UU- GCAUC)AUGA |UUU-AGCCA GCacc--cu- 2101 caagcaaag- ---------- -------(-- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- -)-------- ---------- 2521 ----(----- )-----<--- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- agac->---- --(------) ---------- ---------- -cuuuaguuu 2701 gaa-gcCCCG AA-ACCAG-G UG-AGCUACC CCG-AGA-CA GCCU------ ---------- 2761 -(-------- ---------- ---------- --------au au-aauuua) ---------- 2821 -GGGCUAA-C CC-GUCUCU( GUGGCAA-A) AGAG-UGGGA --AGAGCUC- CGGGUAG-AA 2881 GU(G-ACAG) ACC-UACC-G A-ACUUGGUG AUAGCU-GGU UGCCU--GAG AA-GUG-GAU 2941 (-AGAA)GUU CA-GC-CUUA CGUA<----- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ------->-- ---|------ 3061 -|------|- ---------- ---------- --------(- --------)< ccccaaacca 3121 a--------- ug---aauau aucauua--- ---------- ---------- ---------- 3181 ----agauac uaagggaaau ---------- ---------- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---->----- ---------- 3301 ---------- ---------- ----|----- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ------AU-g -uGAG-AGUU AGUUA--AA- GG-GG(-GUA 3481 CAG)CCCCUU UG-AC----- -aAAGG(AUA -CAA)CCU-u cgcag-g-ag -ga-UAA--- 3541 --agaucaua auacaua-a- aacaua---- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ------cugu u<-------- ---------- ---------- 3721 ---------- ---------- ---------- ---------- -->CUAGU-G GGC(CUAAGA 3781 GC-A)-GCCA -cCUA|A(A- CA)-|GAAAG C(--GUUAAA )GC|-UCAg- acag--<--- 3841 --aaagaagu uuauuauacc gauaaaaaa- ---------- ---------- ---------- 3901 ---------- -------|-- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- ---------- 4021 ---------- ---------- ---------- ---------- ---------- ---------- 4081 -------|uc uuau--ucc| c--c-ua|-- ---------- ---------- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- ---------- ---------- ---------- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- -----aaugu auCAG-GC|- CA-ACCCAUG ---------- 4501 ---------- ---------- (ccua---)< ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ------->-- ---------- ---------| CAUGGAAGAG AUUAUGC-UA 4681 AA|AUGAGUA -ACAA-GAA- ga-------- (-cuugcucu ---------- ---------- 4741 ---------- -----)---- ---uc-|ucc ----aa-GCA CAA--gugua a|----acca 4801 gauc----gg ---------- ----(--acc aa)c-c|--a cuggaa---- ---------- 4861 ---cuuaa-- -cga------ ---------- -------(-- ---------- ------)<-- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 >--------- ---------- ---------- ----(----- ---------- ---------- 5041 ---------- ---------- ----)----- |-----|--- ---------- |--<------ 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ---------- ---------- 5221 ---------- ---------- ---------- ---------- ---------- ---------- 5281 ---------- ---------- ---------- ---------- ---------- ---------- 5341 ---------- ---------- ---------- ---------- ---------- ---------- 5401 ---------- ---------- ------->-- ---------- ---------- ---------- 5461 -----(---- ------)--- ---|------ --------|- ---------- -(-----)-- 5521 |--------- ---------- ---------- -----(---- )--------- ---------- 5581 --<------- ---------- ---------- ---------- ---------- ---------- 5641 ---------- ---------- ------->-- ---------- ---------- ---<------ 5701 ---------- acccaaccca agaggguagu gugaacaaua aaaaucucaa gaagaccuca 5761 acaguuagau a--------- ---------- ---------- ---------- ---------- 5821 ---------- ---------- ---------- ---------- ---------- ---------- 5881 ---------- ---------- ---------- ---------- ---------- ---------- 5941 ---------- ---------- ---------- ---------- ---------- ---------- 6001 ---------- ---------- ---------- ---------- ---------- ---------- 6061 ---------- ---------- ---------- ---------- ---------- ---------- 6121 ---------- ---------- ---------- ---------- ---------- ---------- 6181 ---------- ---------- ---------- ---------- ---------- ---------- 6241 ---------- ---------- ---------- ---------- ---------- ---------- 6301 ---------- ---------- ---------- ---------- ---------- ---------- 6361 ---------- ---------- ---------- ---------- ---------- ---------- 6421 ---------- ---------- ------>--- ---------- ---------- --ucgu-|-- 6481 ---UAACCC- -(CACACU)G G|AGUGC--- ----(cauuu uaaa--)--- -----ggaa| 6541 |---AGAC-U A--AAAGAAG -GGGA-AGGA ACUCGGCAAA ---------- ---------- 6601 ---------- ---------- ---------- ---------- ---------- ---------- 6661 ---------- ---------- ---------- ---------- ---------- ---------- 6721 ---------- ---------- ---------- ---------- ---------- ---------- 6781 ------(--- )--------c acAAGCCU|C GC---CUG-U UU(ACCAA)A AA-CAUC-GC 6841 CUCCUG|C-- ---------- ---------- (aacuauuaa ------)--- ---------- 6901 ------GUA- UAG-GAGGUC CAGCCU<--- ---------- ---------- ---------- 6961 ---------- ---------- -------->G CC-CA-GU|G AC-------- ---------- 7021 ---------- --(------- ---------- ---------- ---------- ---------- 7081 ---------- ---------- --------ua cgg)------ ---------- ---------| 7141 ---GUUC-AA C-|GG-C|-C -GCGGU-(AU -UUUG)ACCG UG|C(AAA)- GG-UAGCGCA 7201 AUC-AC-U-U |GUCUCU(-U AAAU-)AGAG AC|CU-GUAU GAAUGGCUAG A-CGAGGGCU 7261 UA-------- ---------- -------ACU GUCUCCCCCC UCCA-GU-CA ----GUGAAA 7321 UU|G|AUCUA UC-CG(U-GC AGAAG)CGGG UAU----AAA UAUACAAGAC GAGAAG-ACC 7381 CUUUGG-|-A GCUUA--AGG UA|-caagau uca--a---- ---------- ---------- 7441 ---------- ---------- ---------- ---------- ---------- ---------- 7501 ---------- ---------- ---------- --<------- ------ccac gucaa-auaa 7561 cu-ccauaaa aaguaagaac uuaauggcac a--------- ---------- ---------- 7621 ---------- ---------- ---------- ---------- ---------- ---------- 7681 ---------- ---------- ---------- ---------- ---------- ---------- 7741 ---------- ---------- ---------- ---------- ---------- ---------- 7801 ---------- ---------- ---------- ---------- ---------- ---------- 7861 ---------- ---------- ---------- ---------- ---------- ---------- 7921 ---------- ---------- ---------- ---------- ---------- ---------- 7981 ---------- ---------- ---------- ---------- ---------- ---------- 8041 ---------- ---------- ---------- ---------- ---------- ---------- 8101 ---------- ---------- ----->---- ----u-gaaa uuu---U-AC CUUCGGUUG( 8161 GGG)CG-AC- C|ACGGAG(- --------GA UAAAUAAGC- )CUCC-GC|G |u|gg---|< 8221 ---------- ---------- ---------- ---------- ---------- ---------- 8281 ---------- ---------- ---------- ---------- ---------- ------acug 8341 ggccaaau-- cccua----- ---------- ---------- ---------- ---------- 8401 ---------- ---------- ---------- ---------- ---------- ---------- 8461 ---------- ---------- ---------- ---------- ---------- ---------- 8521 ---------- ---------- ---------- ---------- ---------- ---------- 8581 ---------- ---------- ---------- ---------- ---------- ---------- 8641 ---------- ---------- ---------- ---------- ---------- ---------- 8701 ---------- ---------- ---------- ---------- --|------- ---------- 8761 --------aa gccaa-gag( -agacau--- )cucua-ggc -cacagaaua ucug------ 8821 ---------- ---------- ---------- ---------- ---------- --------ac 8881 c|---aauaa UGAUC-cggc u--------- ---------- ---(------ ---------- 8941 ---------- ---------- ---------- ---------- -------aa- ag)--|--ag 9001 ccgAUCAAC- |GAA-CCAAG UUACCC|UAG G|GAUAACAG |C-GCA-A-U CCUCUCCCAG 9061 AG(U--CCAU )AUCGACGAG --GGGGUUUA CG-ACCUCGA UGUU|GG--A U|C|AGGAC| 9121 AU-CC-UAAU GG-UG(--CA -GC)CGCUAU UAAG-GGU|U CGUU(UGUUC )AACGA-UUA 9181 A--AGUCCU- --ACGUGAUC UGAGUUCAGA CC|GG-A(GU AA)UCCAGGU CAGUUUCUAU 9241 CU|GUA---- --|-|<---- ---------- ---------- ---------- -----acgc- 9301 >--------- ---------- -uA-CUU-UU CC--(UAGU- AC(-GAAA)G GAUC-)GGAA 9361 A--AG-- ggggccc-au ac-------- 9421 -|-------- (-----) 9541 ---------- ---------- gcau-gcccc gcc------- ---------- -------ccu 9601 ---------- ---aauuaau (gaaaac--a aauaa)a-uu -ga-guaaag g--------- 9661 ---------- -------<-- ----gaggg- ---------- ---------- ---------- 9721 ---------- ---------- ---------- ---------- ---------- ---------- 9781 ---------- ---------- ---------- ---------- ---------- ---------- 9841 ---------- ---------- ---------- ---------- ---------- ---------- 9901 -------cca aag--ccuac c----->--| ------(--- )--------- -------|gu 9961 cc-(gaaaua a--)-ggaca ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10021 ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~~~ 10141 ~~~~~~~~~~ ~~~~~~~~~~ ~)~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10201 ~~~~~~~~~~ ~|~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10321 ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ||||| // LOCUS mt.N.ather 10775 bp RNA RNA 02-JUN-1998 DEFINITION Mitochondrion Notropis atherinoides.; . ACCESSION AF0384 6 KEYWORDS . SOURCE Mitochondrion Notropis atherinoides. ORGANISM Mitochondrion Notropis atherinoides. REFERENCE 1 (bases 1 to 1753) AUTHORS Simons,A.M. and Mayden,R.L. TITLE Mitochondrial 12S and 16S Ribosomal RNA Sequences Phylogenetic Relationships of the Western North American Phoxinins (Actinopterygii: Cyprinidae) as Inferred from JOURNAL Mol. Phylogenet. Evol. (1998) In press STANDARD No information REFERENCE 2 (bases 1 to 1753) AUTHORS Simons,A.M. and Mayden,R.L. TITLE Direct Submission JOURNAL Submitted (15-DEC-1997) Department of Biological Sciences, The University of Alabama, Box 870344, Tuscaloosa, AL 35487-0344, USA STANDARD No information COMMENTS Sequence information (bases 1 to 10775) Corresponding GenBank entry: AF038486 BASE COUNT 568 a 399 c 375 g 358 t 9075 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~ug caaauugggu cg-cccugaG C--------- ----caacca 301 |gcu--agc| uu-------- -|-------- ---------- ---------| -----(---- 361 ---------) -|-------- -------|-- -------(-- ---------- ---------- 421 -------)-- ---------- ---------- ---------- ---------- -----(---- 481 )---|----- --(-----)- ---------- ---------- ---------- -(------)- 541 ---------- ---------- ---- ---------- |------aac 841 uAA(ACCA)U UUU------- ---------- ---------- ---------- --------uu 901 ------(--- --)------- |uac-cugA- -GUAU-G(-G GAGA)CAGAA -aaggu---- 961 -------<-- --ucaccu-- ---------- ---------- ---------- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- --->------ 1201 ---------- ---------- ---------- ---------< ---------- ---------- 1261 ---------- ---------- ---------> (------)-- ---------- ---|-(---) 1321 -------(-- -----)---- ---------- ---------- ---------- --<------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- >--------- ------(--- ---------- 1561 -------)-- ---------- ---------- -(-------) ---------- ---------- 1621 ---------- --AGAGCAAU AGAG-AA--- ---AGUACC( -GCAA-)GG- ---AAA-GC- 1681 ugaaagagaa augaaacaac ccaua----- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- -----uaa-G C-AAAA ACAAAG---- --------<- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------> (--acuaaac 2041 --)------- -----CUU-G UACCUU(UU- GCAUC)AUGA |UUU-AGCCA GUacc--cu- 2101 caagcaaag- ---------- -------(-- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- -)-------- ---------- 2521 ----(----- )-----<--- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- agau->---- --(------) ---------- ---------- -cuuuaguuu 2701 gau-acCCCG AA-ACCAG-G UG-AGCUACC CCG-AGA-CA GCCU------ ---------- 2761 -(-------- ---------- ---------- --------au au-aauuua) ---------- 2821 -GGGCUAA-C CC-GUCUCU( GUGGCAA-A) AGAG-UGGGA --AGAGCUC- CGGGUAG-AA 2881 GU(G-ACAG) ACC-UACC-G A-ACCUGGUG AUAGCU-GGU UGCCU--AAG AA-AUG-AAU 2941 (-AGAA)GUU CA-GC-CUCG CACG<----- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ------->-- ---|------ 3061 -|------|- ---------- ---------- --------(- --------)< cccuuaauca 3121 a--------- ga---aauac aucauca--- ---------- ---------- ---------- 3181 ----agauau uauggauau- ---------- ---------- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---->----- ---------- 3301 ---------- ---------- ----|----- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ------AU-A -CGAG-AGUU AGUUG--AA- GG-GG(-GUA 3481 CAG)CCCCUU UA-AC----- -aAAGG(AUA -CAA)CCU-u aacag-g-ag -ga-UAA--- 3541 --agaucaua auuaaua-a- aauaua---- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ------cugu u<-------- ---------- ---------- 3721 ---------- ---------- ---------- ---------- -->CUAGU-G GGC(CUGAAA 3781 GC-A)-GCCA -uCUA|A(A- CA)-|GAAAG C(--GUUAAA )GC|-uCgg- acag--<--- 3841 --aacgaagu uuauuauccc gauaaaaaa- ---------- ---------- ---------- 3901 ->-------- -------|-- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- ---------- 4021 ---------- ---------- ---------- ---------- ---------- ---------- 4081 -------|uc uuac--ucc| c--c-ua|-- ---------- ---------- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- ---------- ---------- ---------- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- -----acugu aUUAG-GC|- CA-ACCCAUG ---------- 4501 ---------- ---------- (ccua---)< ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ------->-- ---------- ---------| CAUGGGUGAG ACUAUGC-UA 4681 AA|AUGAGUA -ACAA-GAA- ga-------- (-cucgaucu ---------- ---------- 4741 ---------- -----)---- ---uc-|ucc ----cg-CCA CAA--gugua a|----acca 4801 gauc----gg ---------- ----(--acu ag)c-c|--g cuggaa---- ---------- 4861 ---uuuaa-- -cga------ ---------- -------(-- ---------- ------)<-- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 >--------- ---------- ---------- ----(----- ---------- ---------- 5041 ---------- ---------- ----)----- |-----|--- ---------- |--<------ 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ---------- ---------- 5221 ---------- ---------- ---------- ---------- ---------- ---------- 5281 ---------- ---------- ---------- ---------- ---------- ---------- 5341 ---------- ---------- ---------- ---------- ---------- ---------- 5401 ---------- ---------- ------->-- ---------- ---------- ---------- 5461 -----(---- ------)--- ---|------ --------|- ---------- -(-----)-- 5521 |--------- ---------- ---------- -----(---- )--------- ---------- 5581 --<------- ---------- ---------- ---------- ---------- ---------- 5641 ---------- ---------- ------->-- ---------- ---------- ---<------ 5701 ---------- gcccaaccaa agagggcauu gcgaauaaua aagaccucag gaagagcccg 5761 caauuaacug a--------- ---------- ---------- ---------- ---------- 5821 ---------- ---------- ---------- ---------- ---------- ---------- 5881 ---------- ---------- ---------- ---------- ---------- ---------- 5941 ---------- ---------- ---------- ---------- ---------- ---------- 6001 ---------- ---------- ---------- ---------- ---------- ---------- 6061 ---------- ---------- ---------- ---------- ---------- ---------- 6121 ---------- ---------- ---------- ---------- ---------- ---------- 6181 ---------- ---------- ---------- ---------- ---------- ---------- 6241 ---------- ---------- ---------- ---------- ---------- ---------- 6301 ---------- ---------- ---------- ---------- ---------- ---------- 6361 ---------- ---------- ---------- ---------- ---------- ---------- 6421 ---------- ---------- ------>--- ---------- ---------- --ucgu-|-- 6481 ---UAACCC- -(CACACU)G G|AGUGG--- ----(cauuu uaag--)--- -----ggaa| 6541 |---AGAC-U A--AAAGAAG -GGGA-AGGA ACUCGGCAAA ---------- ---------- 6601 ---------- ---------- ---------- ---------- ---------- ---------- 6661 ---------- ---------- ---------- ---------- ---------- ---------- 6721 ---------- ---------- ---------- ---------- ---------- ---------- 6781 ------(--- )--------c acAAGCCU|C GC---CUG-U UU(ACCAA)A AA-CAUC-GC 6841 CUCCUG|C-- ---------- ---------- (agcauaaa- ------)--- ---------- 6901 ------GUA- UAG-GAGGUC CAGCCU<--- ---------- ---------- ---------- 6961 ---------- ---------- -------->G CC-CA-GU|G AC-------- ---------- 7021 ---------- --(------- ---------- ---------- ---------- ---------- 7081 ---------- ---------- --------ua cgg)------ ---------- ---------| 7141 ---GUUC-AA C-|GG-C|-C -GCGGU-(AU -AUUG)ACCG UG|C(AAA)- GG-UAGCGCA 7201 AUC-AC-U-U |GUCUUU(-U AAAU-)AGAG AC|CU-GUAU GAAUGGCUAG A-CGAGGGCU 7261 UA-------- ---------- -------ACU GUCUCCCCCC UCCA-GU-CA ----GUGAAA 7321 UU|G|AUCUA UC-CG(U-GC AGAAG)CGGG UAU----AGU ACUACAAGAC GAGAAG-ACC 7381 CUUUGG-|-A GCUUA--AGG UA|-cagaau uca--g---- ---------- ---------- 7441 ---------- ---------- ---------- ---------- ---------- ---------- 7501 ---------- ---------- ---------- --<------- ------ccac guuaa-gcaa 7561 cu-ccauaaa cagcaagaac uuagugg-uc a--------- ---------- ---------- 7621 ---------- ---------- ---------- ---------- ---------- ---------- 7681 ---------- ---------- ---------- ---------- ---------- ---------- 7741 ---------- ---------- ---------- ---------- ---------- ---------- 7801 ---------- ---------- ---------- ---------- ---------- ---------- 7861 ---------- ---------- ---------- ---------- ---------- ---------- 7921 ---------- ---------- ---------- ---------- ---------- ---------- 7981 ---------- ---------- ---------- ---------- ---------- ---------- 8041 ---------- ---------- ---------- ---------- ---------- ---------- 8101 ---------- ---------- ---------- ----u-gaaa uuu---U-AC CUUCGGUUG( 8161 GGG)CG-AC- C|GCGGAG(- --------GA AAAGCAAGC- )CUCC-GA|G |u|gg---|< 8221 ---------- ---------- ---------- ---------- ---------- ---------- 8281 ---------- ---------- ---------- ---------- ---------- ------acug 8341 ggccgaga-- cccua----- ---------- ---------- ---------- ---------- 8401 ---------- ---------- ---------- ---------- ---------- ---------- 8461 ---------- ---------- ---------- ---------- ---------- ---------- 8521 ---------- ---------- ---------- ---------- ---------- ---------- 8581 ---------- ---------- ---------- ---------- ---------- ---------- 8641 ---------- ---------- ---------- ---------- ---------- ---------- 8701 ---------- ---------- ---------- ---------- --|------- ---------- 8761 --------aa gccaa-gag( -aaacau--- )cuuca-agc -cgcagaaca ucug------ 8821 ---------- ---------- ---------- ---------- ---------- --------ac 8881 c|---aauaa UGAUC-cggc u--------- ---------- ---(------ ---------- 8941 ---------- ---------- ---------- ---------- -------a-g aa)--|--ag 9001 ccgAUCAAC- |GGA-CCAAG UUACCC|UAG G|GAUAACAG |C-GCA-A-U CCUCUCCCAG 9061 AG(C--CCAU )AUCGACGAG --GGGGUUUA CG-ACCUCGA UGUU|GG--A U|C|AGGAC| 9121 AU-CC-UGGU GG-UG(--CA -GC)CGCUAU UAAG-GGU|U CGUU(UGUUC )AACGA-UUA 9181 A--AGUCCU- --ACGUGAUC UGAGUUCAGA CC|GG-A(GC AA)UCCAGGU CAGUUUCUAU 9241 CU|GUA---- --|-|<---- ---------- ---------- ---------- -----acgc- 9301 >--------- ---------- -uA-CUU-UU CC--(CAGU- AC(-GAAA)G GAUC-)GGAA 9361 A--AG-- ggggccu-au ac-------- 9421 -|-------- (-----) 9541 ---------- ---------- gcau-gcccc acc------- ---------- -------ccu 9601 ---------- ---aauucau (gaaaac--a aauaa)a-uc -aa-auaagg g--------- 9661 ---------- -------<-- -----aggg- ---------- ---------- ---------- 9721 ---------- ---------- ---------- ---------- ---------- ---------- 9781 ---------- ---------- ---------- ---------- ---------- ---------- 9841 ---------- ---------- ---------- ---------- ---------- ---------- 9901 -------cca aaaccccugc c----->--| ------(--- )--------- -------|gc 9961 cc-(aagaua a--)-gggca ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10021 ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~~~ 10141 ~~~~~~~~~~ ~~~~~~~~~~ ~)~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10201 ~~~~~~~~~~ ~|~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10321 ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ||||| // LOCUS mt.N.rubel 10775 bp RNA RNA 11-JAN-191 DEFINITION Mitochondrion Notropis rubellus. ACCESSION No information KEYWORDS No information. SOURCE Mitochondrion Notropis rubellus. ORGANISM Mitochondrion Notropis rubellus. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 10775) Corresponding GenBank entry: U09475 LOCUS NRU09475 2003 bp DNA VRT 22-MAY-1994 DEFINITION Notropis rubellus mitochondrion 12S rRNA and 16S rRNA genes, partial sequence, and tRNA-Val gene, complete sequence. ACCESSION U09475 KEYWORDS . SOURCE rosyface shiner ORGANISM Mitochondrion Notropis rubellus Eukaryotae; Hyperchondria; Eukaryote crown group; Metazoa/Eumycota group; Metazoa; Eumetazoa; Bilateria; Coelomata; Deuterostomia; Chordata; Vertebrata; Gnathostomata; Osteichthyes; Actinopterygii; Actinopteri; Holostei; Halecostomi; Teleostei; Elopocephala; Clupeocephala; Euteleostei; Ostariophysi; Otophysi; Cypriniformes; Cyprinoidea; Cyprinidae; Notropis. REFERENCE 1 (bases 1 to 2003) AUTHORS Duvernell,D.D. and Aspinwall,N. TITLE Introgression of Luxilus cornutus mtDNA into allopatric populations of Luxilus chrysocephalus (Teleostei:Cyprinidae) in Missouri and Arkansas JOURNAL Unpublished STANDARD full automatic REFERENCE 2 (bases 1 to 2003) AUTHORS Aspinwall,N. TITLE Direct Submission JOURNAL Submitted (06-MAY-1994) Nevin Aspinwall, Saint Louis University, Biology, 3507 Laclede, St. Louis, MO 63103-2010, USA STANDARD full automatic COMMENT NCBI gi: 488584 FEATURES Location/Qualifiers rRNA <1..469 /product="12S rRNA" tRNA 470..540 /product="tRNA-Val" rRNA 541..>2003 /product="16S rRNA" source 1..2003 /mitochondrion /organism="Notropis rubellus" /isolate="Collection site: Meramec R., Franklin Co., MO, USA" /haplotype="RUBE" /tissue_type="muscle, skeletal" /dev_stage="adult" BASE COUNT 649 a 470 c 460 g 424 t ORIGIN BASE COUNT 489 a 334 c 327 g 313 t 9312 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~G C--------- ----caacca 301 |GCU--AGC| UUa------- -|-------- ---------- ---------| -----(---- 361 ---------) -|-------- -------|-- -------(-- ---------- ---------- 421 -------)-- ---------- ---------- ---------- ---------- -----(---- 481 )---|----- --(-----)- ---------- ---------- ---------- -(------)- 541 ---------- ---------- ---- ---------- |-----AUAA 841 CUA(ACCA)U UUU------- ---------- ---------- ---------- ---------- 901 ------(--- --)------- |uac-cugA- -GUAU-G(-- gaga)CAGAA -Aagg-u--- 961 -------<-- --ucacc--- ---------- ---------- ---------- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- --->------ 1201 ---------- ---------- ---------- ---------< ---------- ---------- 1261 ---------- ---------- ---------> (------)-- ---------- ---|-(---) 1321 -------(-- -----)---- ---------- ---------- ---------- --<------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- >--------- ------(--- ---------- 1561 -------)-- ---------- ---------- -(-------) ---------- ---------- 1621 ---------u a-GA-GCAAU AGAA-AA--- ---AGUACC( -GCAA-)GGG ---AAA-GC- 1681 ugaaagagaa gugaaacaac ccaua----- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- -----uaa-G C-AAAA ACAAAG---- --------<- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------> (--acuaaac 2041 --)------- -----CUU-G UACCUU(UU- GCAUC)AUGA |UUU-AGCCA GUacc--cu- 2101 caagcaaag- ---------- -------(-- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- -)-------- ---------- 2521 ----(----- )-----<--- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- agau->---- --(------) ---------- ---------- -cuuuaguuu 2701 gau-acCCCG AA-ACCAG-G UG-AGCUACC CCG-AGA-CA GCCU------ ---------- 2761 -(-------- ---------- ---------- ---------a uauaauuua) ---------- 2821 -GGGCCAA-C CC-GUCUCU( GUGGCAA-A) AGAG-UGGGA --AGAGCUC- CGGGUAG-AG 2881 GU(G-ACAG) ACC-UACC-G A-ACCUGGUG AUAGCU-GGU UGCCU--AAG AA-AUG-AA- 2941 (-uag-)-UU CG----CUCG CACA<----- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ------->-- ---|------ 3061 -|------|- ---------- ---------- --------(- --------)< cccuuaauca 3121 agga-----g cacaucauca agauaau--- ---------- ---------- ---------- 3181 ----auggau ac-------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---->----- ---------- 3301 ---------- ---------- ----|----- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ------AU-A -CGAG-AGUU AGUUG--AA- GG-gg(-GUA 3481 CAG)--CCUU UA-AC----- -aAAGG(AUA -CAA)CCU-u agcag-g-ag -ga-UAA--- 3541 --agaucaua guuaaua-a- gauaua---- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ------cugu u<-------- ---------- ---------- 3721 ---------- ---------- ---------- ---------- -->CUAGU-G GGC(CUGAAA 3781 GC-A)-GCCA -UCUA|A(A- CA)-|GAAAG C(--GUUAAA )GC|-ucag- acag--<--- 3841 --aaggaaau uuauuauccg auaaaa---- ---------- ---------- ---------- 3901 ->-------- -------|-- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- ---------- 4021 ---------- ---------- ---------- ---------- ---------- ---------- 4081 -------|uc u-ac--ucc| cuac-ug|-- ---------- ---------- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- ---------- ---------- ---------- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------u aUUAG--C|- CA-ACCAUG- ---------- 4501 ---------- ---------- (-cca---)< ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ------->-- ---------- ---------| CAUGG-UGAG ACUAUGC-UA 4681 A-|AUGAGUA -ACAA-GAA- ---------- (-gacuuga- ---------- ---------- 4741 ---------- -----)---- ------|ucu u-cucc-gCA Caa--gugua a|-----aca 4801 gauc----ga ---------- ----(---cu ag)c-c|--g cuggaa---- ---------- 4861 ---uuuaa-- -cga------ ---------- -------(-- ---------- ------)<-- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 >--------- ---------- ---------- ----(----- ---------- ---------- 5041 ---------- ---------- ----)----- |-----|--- ---------- |--<------ 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ---------- ---------- 5221 ---------- ---------- ---------- ---------- ---------- ---------- 5281 ---------- ---------- ---------- ---------- ---------- ---------- 5341 ---------- ---------- ---------- ---------- ---------- ---------- 5401 ---------- ---------- ------->-- ---------- ---------- ---------- 5461 -----(---- ------)--- ---|------ --------|- ---------- -(-----)-- 5521 |--------- ---------- ---------- -----(---- )--------- ---------- 5581 --<------- ---------- ---------- ---------- ---------- ---------- 5641 ---------- ---------- ------->-- ---------- ---------- ---<------ 5701 -------gcc caaccaaaga ggcauugcgu aauauaaa-- ---ccucaag aagaacccgc 5761 aauuaacuaa ---------- ---------- ---------- ---------- ---------- 5821 ---------- ---------- ---------- ---------- ---------- ---------- 5881 ---------- ---------- ---------- ---------- ---------- ---------- 5941 ---------- ---------- ---------- ---------- ---------- ---------- 6001 ---------- ---------- ---------- ---------- ---------- ---------- 6061 ---------- ---------- ---------- ---------- ---------- ---------- 6121 ---------- ---------- ---------- ---------- ---------- ---------- 6181 ---------- ---------- ---------- ---------- ---------- ---------- 6241 ---------- ---------- ---------- ---------- ---------- ---------- 6301 ---------- ---------- ---------- ---------- ---------- ---------- 6361 ---------- ---------- ---------- ---------- ---------- ---------- 6421 ---------- ---------- ------>--- ---------- ---------- --ucg--|-- 6481 --uugacCC- -(CACACU)G G|AGUGg--- ----(cauuu uaa---)--- ----gggaa| 6541 |---AGGC-U A--AAAGAAG -GGGA-AGGA ACUCGGCAAA ---------- ---------- 6601 ---------- ---------- ---------- ---------- ---------- ---------- 6661 ---------- ---------- ---------- ---------- ---------- ---------- 6721 ---------- ---------- ---------- ---------- ---------- ---------- 6781 ------(--- )--------- cacAAGCC|U GC---CUG-U UU(ACCAA)A AA-CAUG--C 6841 CUCCUG|C-- ---------- ---------- (-aacauaaa ------)--- ---------- 6901 ------GUA- UAG-GAGGUC CAGCCU<--- ---------- ---------- ---------- 6961 ---------- ---------- -------->G CC-CA-GU|G AC-------- ---------- 7021 ---------- --(------- ---------- ---------- ---------- ---------- 7081 ---------- ---------- --------ua cgg)------ ---------- ---------| 7141 ---GUUC-AA C-|GG-C|cC -GCGGU-(AU -AUUG)ACCG UG|C(AAA)- GG-UAGCGCA 7201 AUC-AC-U-U |GUCUUU(-U AAAU-)AGAG AC|CU-GUAU GAAUGGCUAG A-CGAGGGCU 7261 UA-------- ---------- -------ACU GUCUCCCCCU UCCA-GU-CA ----GUGAAA 7321 UU|G|AUCUA UC-CG(U-GC AGAAG)CGUA UAU------- ACUACGAGAC GAGAAG-ACC 7381 CUUUGG-|-A GCUUA--AGG UA|caaaguu ca-------| <--------- ---------- 7441 ---------- ---------- --->------ ---------- ---------- ---------- 7501 ---------- ---------- ---------- --<-gccacg uuaagcaacu ccaua-agaa 7561 ---------- ---------g caagaacuua gugg------ ---------- ---------- 7621 ---------- ---------- ---------> --(------- -)-------- ---------- 7681 ---------- -------|-- ---------- ---------- ---------- ---------- 7741 -----(---- ----)----- ---------- ---------- ---------- --------<- 7801 ---------- ---------- ---------- ---------- ---------- ---------- 7861 ---------- ---------- ---------- ---------- ---------- ---------- 7921 ---------- ---------- ---------- ---------- ---------- ---------- 7981 ---------- ---------- ---------- ---------- ---------- ---------- 8041 ---------- ---------- ---------- ---------- ---------- ---------- 8101 ---------- ---------- ----->---- -uuau-gaag uu----u-uc auUCGGUUG( 8161 GGU)CG-AC- C|GCGGAG(- --------GA AAAGCAAGC- )CUCC-GA|G |u|gg---|< 8221 ---------- ---------- ---------- ---------- ---------- ---------- 8281 ---------- ---------- ---------- ---------- ---------- ----acuggg 8341 ccgagac--c cua------- ---------- ---------- ---------- ->-------- 8401 ---------- ---------- ---------- ---------- ---------- ---------- 8461 ---------- ---------- ---------- ---------- ---------- ---------- 8521 ---------- ---------- ---------- ---------- ---------- ---------- 8581 ---------- ---------- ---------- ---------- ---------- ---------- 8641 ---------- ---------- ---------- ---------- ---------- ---------- 8701 ---------- ---------- ---------- ---------- --|------- ---------- 8761 --------aa gccaa-aag( -agacau--- )cuuca-agc -cgcagaaca ucug------ 8821 ---------- ---------- ---------- ---------- ---------- --------ac 8881 c|---aauaa UGAUC-cggc u--------- ---------- ---(------ ---------- 8941 ---------- ---------- ---------- ---------- --------aa aa)--|--ag 9001 ccgAUCAAC- |GGA-CCAAG UUACCC|UAG G|GAUAACAG |C-GCA-A-U CCUCUCCCAG 9061 AG(C--CCAU )AUCGACGAG --GGGGUUUA CG-ACCUCGA UGUU|GG--A U|C|AGGAC| 9121 AU-CC-UGGU GG-UG(--CA -GC)CGCUAU UAAG-GGU|U CGUU(UGUUC )AACGA-UUA 9181 A--AGUCCU- --AC~~~~~~ ~~~~~~~~~~ ~~|~~~~(~~ ~~)~~~~~~~ ~~~~~~~~~~ 9241 ~~|~~~~~~~ ~~|~|<~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9301 >~~~~~~~~~ ~~~~~~~~~~ ~~~-~~~~~~ ~~~~(~~~~~ ~~(~~~~~)~ ~~~~~)~~~~ 9361 ~~~~~-<~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~>~ ~~~~~~~~~~ ~~~~~~~~~~ 9421 ~|~~~~~~~~ (~~~~~)<~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~> 9541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9601 ~~~~~~~~~~ ~~~~~~~~~~ (~~~~~~~~~ ~~~~~)~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9661 ~~~~~~~~~~ ~~~~~~~<~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~>~~| ~~~~~~(~~~ )~~~~~~~~~ ~~~~~~~|~~ 9961 ~~~(~~~~~~ ~~~)~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10021 ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~~~ 10141 ~~~~~~~~~~ ~~~~~~~~~~ ~)~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10201 ~~~~~~~~~~ ~|~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10321 ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ||||| // LOCUS mt.P.mirab 10775 bp RNA RNA 02-JUN-1998 DEFINITION Mitochondrion Phenacobius mirabilis.; . ACCESSION AF0384 2 KEYWORDS . SOURCE Mitochondrion Phenacobius mirabilis. ORGANISM Mitochondrion Phenacobius mirabilis. REFERENCE 1 (bases 1 to 2705) AUTHORS Simons,A.M. and Mayden,R.L. TITLE Phylogenetic Relationships of the Western North American Phoxinins (Actinopterygii: Cyprinidae) as Inferred from Mitochondrial 12S and 16S Ribosomal RNA Sequences JOURNAL Mol. Phylogenet. Evol. (1998) In press STANDARD No information REFERENCE 2 (bases 1 to 2705) AUTHORS Simons,A.M. and Mayden,R.L. TITLE Direct Submission JOURNAL Submitted (15-DEC-1997) Department of Biological Sciences, The University of Alabama, Box 870344, Tuscaloosa, AL 35487-0344, USA STANDARD No information COMMENTS Sequence information (bases 1 to 10775) Corresponding GenBank entry: AF038492 BASE COUNT 570 a 401 c 357 g 366 t 9081 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~ug caaauuggau ca-cccugaG C--------- ----caacca 301 |gcu--agc| uu-------- -|-------- ---------- ---------| -----(---- 361 ---------) -|-------- -------|-- -------(-- ---------- ---------- 421 -------)-- ---------- ---------- ---------- ---------- -----(---- 481 )---|----- --(-----)- ---------- ---------- ---------- -(------)- 541 ---------- ---------- ---- ---------- |------aac 841 uAA(ACCA)U UUU------- ---------- ---------- ---------- --------uu 901 ------(--- --)------- |uac-cuaA- -GUAU-G(-G GAGA)CAGAA --aggg---- 961 -------<-- --cucaccu- ---------- ---------- ---------- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- --->------ 1201 ---------- ---------- ---------- ---------< ---------- ---------- 1261 ---------- ---------- ---------> (------)-- ---------- ---|-(---) 1321 -------(-- -----)---- ---------- ---------- ---------- --<------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- >--------- ------(--- ---------- 1561 -------)-- ---------- ---------- -(-------) ---------- ---------- 1621 ---------- --GAAGCAAU AGAA-AA--- ---AGUACC( -GCAA-)GG- ---AAA-GC- 1681 ugaaagagaa augaaauaau ccaua----- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- -----uaa-G C-AAAA ACAAAG---- --------<- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------> (--acuaaac 2041 --)------- -----CUU-G UACCUU(UU- GCAUC)AUGA |UUU-AGCCA GCacc--cu- 2101 caagcgaag- ---------- -------(-- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- -)-------- ---------- 2521 ----(----- )-----<--- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- agac->---- --(------) ---------- ---------- -cuuuaguuu 2701 gau-acCCCG AA-ACCAG-G UG-AGCUACC CCG-AGA-CA GCCU------ ---------- 2761 -(-------- ---------- ---------- --------au au-a-uuua) ---------- 2821 -GGGCUAA-C CC-GUCUCU( GUGGCAA-A) AGAG-UGGGA --UGAGCUC- CGGGUAG-AA 2881 GU(G-AUAA) ACU-UACC-G A-ACCUGGUG AUAGCU-GGU UGCCU--AAG AA-AUG-AAU 2941 (-AGAA)GUU CA-GC-CUCG UCCA<----- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ------->-- ---|------ 3061 -|------|- ---------- ---------- --------(- --------)< cccuuuguca 3121 ggaa-----a uauacuacua agacacc--- ---------- ---------- ---------- 3181 ----uuggaa au-------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---->----- ---------- 3301 ---------- ---------- ----|----- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ------ac-A -CGAG-AGUU AGUUu--AA- GG-GG(-GUA 3481 CAG)CCCCUU UA-AC----- -aAAGG(AUA -CAA)CCU-u cacag-g-ag -ga-UAA--- 3541 --agaucaua auuaaua-a- aaccua---- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ------cugu u<-------- ---------- ---------- 3721 ---------- ---------- ---------- ---------- -->CUAGU-G GGC(CUGAAA 3781 GC-A)-GCCA -cCUA|A(U- UA)-|GAAAG C(--GUUAAA )GC|-uCag- acag--<--- 3841 --gaaaaagu uuauuauacc aauaaaaaaa ---------- ---------- ---------- 3901 ->-------- -------|-- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- ---------- 4021 ---------- ---------- ---------- ---------- ---------- ---------- 4081 -------|uc uuac--ucc| c--c-ua|-- ---------- ---------- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- ---------- ---------- ---------- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- -----acuau auUAG-GC|- UA-ACCCAUA ---------- 4501 ---------- ---------- (cuuc---)< ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ------->-- ---------- ---------| UAUGGGUGAA ACUAUGC-UA 4681 AA|AUGAGUA -AUAA-GAA- ga-------- (-ccugaucu ---------- ---------- 4741 ---------- -----)---- ---uc-|ucc ----ug-GCA CAA--gugua a|----acca 4801 gauc----gg ---------- ----(--acu ag)c-c|--g cuggga---- ---------- 4861 ---uucaa-- -cga------ ---------- -------(-- ---------- ------)<-- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 >--------- ---------- ---------- ----(----- ---------- ---------- 5041 ---------- ---------- ----)----- |-----|--- ---------- |--<------ 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ---------- ---------- 5221 ---------- ---------- ---------- ---------- ---------- ---------- 5281 ---------- ---------- ---------- ---------- ---------- ---------- 5341 ---------- ---------- ---------- ---------- ---------- ---------- 5401 ---------- ---------- ------->-- ---------- ---------- ---------- 5461 -----(---- ------)--- ---|------ --------|- ---------- -(-----)-- 5521 |--------- ---------- ---------- -----(---- )--------- ---------- 5581 --<------- ---------- ---------- ---------- ---------- ---------- 5641 ---------- ---------- ------->-- ---------- ---------- ---<------ 5701 ---------- ccccaaccaa agagggcauu gugauuaaua aaaaccucaa ggagagcuca 5761 caauuaagua a--------- ---------- ---------- ---------- ---------- 5821 ---------- ---------- ---------- ---------- ---------- ---------- 5881 ---------- ---------- ---------- ---------- ---------- ---------- 5941 ---------- ---------- ---------- ---------- ---------- ---------- 6001 ---------- ---------- ---------- ---------- ---------- ---------- 6061 ---------- ---------- ---------- ---------- ---------- ---------- 6121 ---------- ---------- ---------- ---------- ---------- ---------- 6181 ---------- ---------- ---------- ---------- ---------- ---------- 6241 ---------- ---------- ---------- ---------- ---------- ---------- 6301 ---------- ---------- ---------- ---------- ---------- ---------- 6361 ---------- ---------- ---------- ---------- ---------- ---------- 6421 ---------- ---------- ------>--- ---------- ---------- --ucgu-|-- 6481 ---UACCCC- -(CACACU)G G|AGUGC--- ----(ca-uu uaaa--)--- -----ggaa| 6541 |---AGAC-U U--AAAGAGG -AGGA-AGGA ACUCGGCAAA ---------- ---------- 6601 ---------- ---------- ---------- ---------- ---------- ---------- 6661 ---------- ---------- ---------- ---------- ---------- ---------- 6721 ---------- ---------- ---------- ---------- ---------- ---------- 6781 ------(--- )--------c aaAAGCCU|C GC---CUG-U UU(ACCAA)A AA-CAUC-GC 6841 CUCCUG|C-- ---------- ---------- (aacacaa-- ------)--- ---------- 6901 ------GUA- UAG-GAGGUC CAGCCU<--- ---------- ---------- ---------- 6961 ---------- ---------- -------->G CC-CA-GU|G AC-------- ---------- 7021 ---------- --(------- ---------- ---------- ---------- ---------- 7081 ---------- ---------- --------ua cgg)------ ---------- ---------| 7141 ---GUUC-AA C-|GG-C|-C -GCGGU-(AU -AUUG)ACCG UG|C(AAA)- GG-UAGCGCA 7201 AUC-AC-U-U |GUCUUU(-U AAAU-)AGAG AC|CU-GUAU GAAUGGCUAG A-CGAGGGCU 7261 UG-------- ---------- -------ACU GUCUCCCCCC UCCA-GU-CA ----GUGAAA 7321 UU|G|AUCUG CC-CG(U-GC AGAAG)CGGA CAU----AAA ACUACAAGAC GAGAAG-ACC 7381 CUAUGG-|-A GCUUA--AGG UA|-caaaac uua--a---| <--------- ---------- 7441 ---------- ---------- --->------ ---------- ---------- ---------- 7501 ---------- ---------- ---------- --<------- ------ccac guuaa-acga 7561 cu-cuuucaa aagcaagaac cuagugg-cc c--------- ---------- ---------- 7621 ---------- ---------- ---------- ---------- ---------- ---------- 7681 ---------- ---------- ---------- ---------- ---------- ---------- 7741 ---------- ---------- ---------- ---------- ---------- ---------- 7801 ---------- ---------- ---------- ---------- ---------- ---------- 7861 ---------- ---------- ---------- ---------- ---------- ---------- 7921 ---------- ---------- ---------- ---------- ---------- ---------- 7981 ---------- ---------- ---------- ---------- ---------- ---------- 8041 ---------- ---------- ---------- ---------- ---------- ---------- 8101 ---------- ---------- ---------- ----u-aaag ucu---U-AC CUUCGGUUG( 8161 GGG)CG-AC- C|ACGGAG(- --------GA AAACUAAGC- )CUCC-GA|G |u|gg---|< 8221 ---------- ---------- ---------- ---------- ---------- ---------- 8281 ---------- ---------- ---------- ---------- ---------- ------aaug 8341 gg-uaau--- cccua----- ---------- ---------- ---------- ---------- 8401 ---------- ---------- ---------- ---------- ---------- ---------- 8461 ---------- ---------- ---------- ---------- ---------- ---------- 8521 ---------- ---------- ---------- ---------- ---------- ---------- 8581 ---------- ---------- ---------- ---------- ---------- ---------- 8641 ---------- ---------- ---------- ---------- ---------- ---------- 8701 ---------- ---------- ---------- ---------- --|------- ---------- 8761 --------aa gccaa-aag( -agacau--- )cuuua-agc -cgcagaaca ucug------ 8821 ---------- ---------- ---------- ---------- ---------- --------ac 8881 c|---aacaa UGAUC-cggc u--------- ---------- ---(------ ---------- 8941 ---------- ---------- ---------- ---------- --------cu ag)--|--gg 9001 ccgAUCAAC- |GAA-CCAAG UUACCC|UAG G|GAUAACAG |C-GCA-A-U CCUCUCCCAG 9061 AG(C--CCAU )AUCGACGAG --GGGGUUUA CG-ACCUCGA UGUU|GG--A U|C|AGGAC| 9121 AU-CC-UAAU GG-UG(--CA -GC)CGCUAU UAAG-GGU|U CGUU(UGUUC )AACGA-UUA 9181 A--AGUCCU- --ACGUGAUC UGAGUUCAGA CC|GG-A(GU AA)UCCAGGU CAGUUUCUAU 9241 CU|GUA---- --|-|<---- ---------- ---------- ---------- -----acgc- 9301 >--------- ---------- -uA-CUU-UU CC--(UAGU- AC(-GAAA)G GAUC-)GGAA 9361 A--AA-- ggggccu-au gc-------- 9421 -|-------- (-----) 9541 ---------- ---------- gcac-gcccc acc------- ---------- -------ccu 9601 ---------- ---aauuuau (gaaacc--a aauaa)a-uu -aa--acaag g--------- 9661 ---------- -------<-- ----gcggg- ---------- ---------- ---------- 9721 ---------- ---------- ---------- ---------- ---------- ---------- 9781 ---------- ---------- ---------- ---------- ---------- ---------- 9841 ---------- ---------- ---------- ---------- ---------- ---------- 9901 -------cca aa--cccugc c----->--| ------(--- )--------- -------|gc 9961 cc-(aaaaua a--)-gggca ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10021 ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~~~ 10141 ~~~~~~~~~~ ~~~~~~~~~~ ~)~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10201 ~~~~~~~~~~ ~|~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10321 ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ||||| // LOCUS mt.P.graci 10775 bp RNA RNA 02-JUN-1998 DEFINITION Mitochondrion Platygobio gracilis.; . ACCESSION AF0384 1 KEYWORDS . SOURCE Mitochondrion Platygobio gracilis. ORGANISM Mitochondrion Platygobio gracilis. REFERENCE 1 (bases 1 to 1754) AUTHORS Simons,A.M. and Mayden,R.L. TITLE Phoxinins (Actinopterygii: Cyprinidae) as Inferred from Mitochondrial 12S and 16S Ribosomal RNA Sequences Phylogenetic Relationships of the Western North American JOURNAL Mol. Phylogenet. Evol. (1998) In press STANDARD No information REFERENCE 2 (bases 1 to 1754) AUTHORS Simons,A.M. and Mayden,R.L. TITLE Direct Submission JOURNAL Submitted (15-DEC-1997) Department of Biological Sciences, The University of Alabama, Box 870344, Tuscaloosa, AL 35487-0344, USA STANDARD No information COMMENTS Sequence information (bases 1 to 10775) Corresponding GenBank entry: AF038491 BASE COUNT 578 a 400 c 367 g 356 t 9074 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~ug caaauuggau ca-cccugaG C--------- ----uaacca 301 |gcu--agc| uu-------- -|-------- ---------- ---------| -----(---- 361 ---------) -|-------- -------|-- -------(-- ---------- ---------- 421 -------)-- ---------- ---------- ---------- ---------- -----(---- 481 )---|----- --(-----)- ---------- ---------- ---------- -(------)- 541 ---------- ---------- ---- ---------- |------aac 841 uAA(ACCA)U UuU------- ---------- ---------- ---------- --------uu 901 ------(--- --)------- |uac-cugA- -GUAU-G(-G GAGA)CAGAA -aaggu---- 961 -------<-- --ucaccc-- ---------- ---------- ---------- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- --->------ 1201 ---------- ---------- ---------- ---------< ---------- ---------- 1261 ---------- ---------- ---------> (------)-- ---------- ---|-(---) 1321 -------(-- -----)---- ---------- ---------- ---------- --<------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- >--------- ------(--- ---------- 1561 -------)-- ---------- ---------- -(-------) ---------- ---------- 1621 ---------- --AAAGCAAU AGAG-AA--- ---AGUACC( -GCAA-)GG- ---AAA-GC- 1681 ugaaagagaa augaaauaac ccaua----- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- -----uaa-G C-AAAA ACAAAG---- --------<- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------> (--acuaaac 2041 --)------- -----CUU-G UACCUU(UU- GCAUC)AUGA |UUU-AGCCA GCacc--cu- 2101 caagcaaag- ---------- -------(-- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- -)-------- ---------- 2521 ----(----- )-----<--- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- agau->---- --(------) ---------- ---------- -cuuuaguuu 2701 gau-acCCCG AA-ACCAG-G UG-AGCUACC CCG-AGA-CA GCCU------ ---------- 2761 -(-------- ---------- ---------- --------au guaa-uuua) ---------- 2821 -GGGCUAA-C CC-GUCUCU( GUGGCAA-A) AGAG-UGGGA --AGAGCUC- CGGGUAG-AA 2881 GU(G-ACAG) ACC-UACC-G A-ACCUGGUG AUAGCU-GGU UGCCU--GGG AA-AUG-AAU 2941 (-AGAA)GUU CA-GC-CUCG CACA<----- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ------->-- ---|------ 3061 -|------|- ---------- ---------- --------(- --------)< cccuuaauca 3121 a-ga-----a acau---acc gu---ca--- ---------- ---------- ---------- 3181 ----agacau uauggaaaa- ---------- ---------- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---->----- ---------- 3301 ---------- ---------- ----|----- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ------AU-A -CGAG-AGUU AGUUG--AA- GG-GG(-GUA 3481 CAG)CCCCUU UA-AC----- -aAAGG(AUA -CAA)CCU-u uacag-g-ag -ga-UAA--- 3541 --agaucaua auauaua-a- aauaua---- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ------cugu u<-------- ---------- ---------- 3721 ---------- ---------- ---------- ---------- -->CUAGU-G GGC(CUGAAA 3781 GC-A)-GCCA -cCUA|A(A- CA)-|GAAAG C(--GUUAAA )GC|-uCgg- acag--<--- 3841 --aaggaagu uuauuauacc gauaaaaaa- ---------- ---------- ---------- 3901 ->-------- -------|-- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- ---------- 4021 ---------- ---------- ---------- ---------- ---------- ---------- 4081 -------|uc uuac--ucc| c--c-ua|-- ---------- ---------- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- ---------- ---------- ---------- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- -----auugu auCAG-GC|- CA-ACCCAUG ---------- 4501 ---------- ---------- (ccca---)< ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ------->-- ---------- ---------| CAUGGAUGAG ACUAUGC-UA 4681 AA|AUGAGUA -ACAA-GAA- ga-------- (-ccugaucu ---------- ---------- 4741 ---------- -----)---- ---uc-|ucc ----cg-CCA CAA--gugua g|----acca 4801 gauc----gg ---------- ----(--acc aa)c-c|--a cuggaa---- ---------- 4861 ---uuuaa-- -cga------ ---------- -------(-- ---------- ------)<-- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 >--------- ---------- ---------- ----(----- ---------- ---------- 5041 ---------- ---------- ----)----- |-----|--- ---------- |--<------ 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ---------- ---------- 5221 ---------- ---------- ---------- ---------- ---------- ---------- 5281 ---------- ---------- ---------- ---------- ---------- ---------- 5341 ---------- ---------- ---------- ---------- ---------- ---------- 5401 ---------- ---------- ------->-- ---------- ---------- ---------- 5461 -----(---- ------)--- ---|------ --------|- ---------- -(-----)-- 5521 |--------- ---------- ---------- -----(---- )--------- ---------- 5581 --<------- ---------- ---------- ---------- ---------- ---------- 5641 ---------- ---------- ------->-- ---------- ---------- ---<------ 5701 ---------- gcccaacuaa agagggcauu gugaauaaua aagaccucaa gaagaacuca 5761 ca-cuaaaug a--------- ---------- ---------- ---------- ---------- 5821 ---------- ---------- ---------- ---------- ---------- ---------- 5881 ---------- ---------- ---------- ---------- ---------- ---------- 5941 ---------- ---------- ---------- ---------- ---------- ---------- 6001 ---------- ---------- ---------- ---------- ---------- ---------- 6061 ---------- ---------- ---------- ---------- ---------- ---------- 6121 ---------- ---------- ---------- ---------- ---------- ---------- 6181 ---------- ---------- ---------- ---------- ---------- ---------- 6241 ---------- ---------- ---------- ---------- ---------- ---------- 6301 ---------- ---------- ---------- ---------- ---------- ---------- 6361 ---------- ---------- ---------- ---------- ---------- ---------- 6421 ---------- ---------- ------>--- ---------- ---------- --ucgu-|-- 6481 ---UAACCC- -(CACACU)G G|AGUGC--- ----(cauau uaag--)--- -----ggaa| 6541 |---AGAC-U A--AAAGAAG -GGGA-AGGA ACUCGGCAAA ---------- ---------- 6601 ---------- ---------- ---------- ---------- ---------- ---------- 6661 ---------- ---------- ---------- ---------- ---------- ---------- 6721 ---------- ---------- ---------- ---------- ---------- ---------- 6781 ------(--- )--------c acAAGCCU|C GC---CUG-U UU(ACCAA)A AA-CAUC-GC 6841 CUCCUG|C-- ---------- ---------- (aacauuaa- ------)--- ---------- 6901 ------GUA- UAG-GAGGUC CAGCCU<--- ---------- ---------- ---------- 6961 ---------- ---------- -------->G CC-CA-GU|G AC-------- ---------- 7021 ---------- --(------- ---------- ---------- ---------- ---------- 7081 ---------- ---------- --------ua cgg)------ ---------- ---------| 7141 ---GUUC-AA C-|GG-C|-C -GCGGU-(AU -AUUG)ACCG UG|C(AAA)- GG-UAGCGCA 7201 AUC-AC-U-U |GUCUUU(-U AAAU-)AGAG AC|CU-GUAU GAAUGGCUAG A-CGAGGGCU 7261 UA-------- ---------- -------ACU GUCUCCCCCC UCCA-GU-CA ----GUGAAA 7321 UU|G|AUCUA UC-CG(U-GC AGAAG)CGGG UAU----AAC AGUACAAGAC GAGAAG-ACC 7381 CUUUGG-|-A GCUUA--AGG UA|-caagac uca--g---- ---------- ---------- 7441 ---------- ---------- ---------- ---------- ---------- ---------- 7501 ---------- ---------- ---------- --<------- ------ccac guuaa-acaa 7561 cu-ccguaga aagcaagaac uuagugg-cc a--------- ---------- ---------- 7621 ---------- ---------- ---------- ---------- ---------- ---------- 7681 ---------- ---------- ---------- ---------- ---------- ---------- 7741 ---------- ---------- ---------- ---------- ---------- ---------- 7801 ---------- ---------- ---------- ---------- ---------- ---------- 7861 ---------- ---------- ---------- ---------- ---------- ---------- 7921 ---------- ---------- ---------- ---------- ---------- ---------- 7981 ---------- ---------- ---------- ---------- ---------- ---------- 8041 ---------- ---------- ---------- ---------- ---------- ---------- 8101 ---------- ---------- ---------- ----u-gaaa cuu---U-AC CUUCGGUUG( 8161 GGG)CG-AC- C|ACGGAG(- --------GA AAAACAAGC- )CUCC-GA|G |u|gg---|< 8221 ---------- ---------- ---------- ---------- ---------- ---------- 8281 ---------- ---------- ---------- ---------- ---------- ------acug 8341 gg-ccaaaac cccua----- ---------- ---------- ---------- ---------- 8401 ---------- ---------- ---------- ---------- ---------- ---------- 8461 ---------- ---------- ---------- ---------- ---------- ---------- 8521 ---------- ---------- ---------- ---------- ---------- ---------- 8581 ---------- ---------- ---------- ---------- ---------- ---------- 8641 ---------- ---------- ---------- ---------- ---------- ---------- 8701 ---------- ---------- ---------- ---------- --|------- ---------- 8761 --------aa gccaa-gag( -agacau--- )cuuua-agc -cgcagaaca ucug------ 8821 ---------- ---------- ---------- ---------- ---------- --------ac 8881 c|---aauaa UGAUC-cggc u--------- ---------- ---(------ ---------- 8941 ---------- ---------- ---------- ---------- -------aau aa)--|--ag 9001 ccgAUCAAC- |GAA-CCAAG UUACCC|UAG G|GAUAACAG |C-GCA-A-U CCUCUCCCAG 9061 AG(C--CCAU )AUCGACGAG --GGGGUUUA CG-ACCUCGA UGUU|GG--A U|C|AGGAC| 9121 AU-CC-UGGU GG-UG(--CA -GC)CGCUAU UAAG-GGU|U CGUU(UGUUC )AACGA-UUA 9181 A--AGUCCU- --ACGUGAUC UGAGUUCAGA CC|GG-A(GC AA)UCCAGGU CAGUUUCUAU 9241 CU|GUA---- --|-|<---- ---------- ---------- ---------- -----acgc- 9301 >--------- ---------- -uA-CUU-UU CC--(UAGU- AC(-GAAA)G GAUC-)GGAA 9361 A--AG-- ggggccc-au ac-------- 9421 -|-------- (-----) 9541 ---------- ---------- gcau-gcccc acc------- ---------- -------ccu 9601 ---------- ---aauucau (gaaaac--a aauaa)a-uu -aa-auaagg g--------- 9661 ---------- -------<-- -----aggg- ---------- ---------- ---------- 9721 ---------- ---------- ---------- ---------- ---------- ---------- 9781 ---------- ---------- ---------- ---------- ---------- ---------- 9841 ---------- ---------- ---------- ---------- ---------- ---------- 9901 -------cca gaaccccugc c----->--| ------(--- )--------- -------|gc 9961 cc-(aaguua a--)-gggca ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10021 ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~~~ 10141 ~~~~~~~~~~ ~~~~~~~~~~ ~)~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10201 ~~~~~~~~~~ ~|~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10321 ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ||||| // LOCUS mt.R.atrat 10775 bp RNA RNA 02-JUN-1998 DEFINITION Mitochondrion Rhinichthys atratulus.; . ACCESSION AF0384 5 KEYWORDS . SOURCE Mitochondrion Rhinichthys atratulus. ORGANISM Mitochondrion Rhinichthys atratulus. REFERENCE 1 (bases 1 to 1759) AUTHORS Simons,A.M. and Mayden,R.L. TITLE Mitochondrial 12S and 16S Ribosomal RNA Sequences Phylogenetic Relationships of the Western North American Phoxinins (Actinopterygii: Cyprinidae) as Inferred from JOURNAL Mol. Phylogenet. Evol. (1998) In press STANDARD No information REFERENCE 2 (bases 1 to 1759) AUTHORS Simons,A.M. and Mayden,R.L. TITLE Direct Submission JOURNAL Submitted (15-DEC-1997) Department of Biological Sciences, The University of Alabama, Box 870344, Tuscaloosa, AL 35487-0344, USA STANDARD No information COMMENTS Sequence information (bases 1 to 10775) Corresponding GenBank entry: AF038495 BASE COUNT 571 a 402 c 379 g 354 t 9069 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~ug caaguuggau ca-cccugaG C--------- ----uaacca 301 |gcu--agc| uu-------- -|-------- ---------- ---------| -----(---- 361 ---------) -|-------- -------|-- -------(-- ---------- ---------- 421 -------)-- ---------- ---------- ---------- ---------- -----(---- 481 )---|----- --(-----)- ---------- ---------- ---------- -(------)- 541 ---------- ---------- ---- ---------- |------aac 841 uAA(ACCA)U Uuu------- ---------- ---------- ---------- --------uu 901 ------(--- --)------- |uac-cuaA- -GUAU-G(-G GAGA)CAGAA -aaggu---- 961 -------<-- --ucaaccc- ---------- ---------- ---------- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- --->------ 1201 ---------- ---------- ---------- ---------< ---------- ---------- 1261 ---------- ---------- ---------> (------)-- ---------- ---|-(---) 1321 -------(-- -----)---- ---------- ---------- ---------- --<------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- >--------- ------(--- ---------- 1561 -------)-- ---------- ---------- -(-------) ---------- ---------- 1621 ---------- --AAAGCGAU AGAG-AG--- ---AGUACC( -GCAA-)GG- ---AAA-GC- 1681 ugaaagagaa gugaaacaac ccaua----- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- -----uaa-G C-AGAA ACAAAG---- --------<- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------> (--auuaaac 2041 --)------- -----CUU-G UACCUU(UU- GCAUC)AUGA |UUU-AGCCA GUacc--cu- 2101 caagcaaag- ---------- -------(-- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- -)-------- ---------- 2521 ----(----- )-----<--- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- agac->---- --(------) ---------- ---------- -cuuuaguuu 2701 gau-acCCCG AA-ACCAG-G UG-AGCUACC CCG-AGA-CA GCCU------ ---------- 2761 -(-------- ---------- ---------- --------au guaa-uuua) ---------- 2821 -GGGCUAA-C CC-GUCUCU( GUGGCAA-A) AGAG-UGGGA --AGAGCUC- CGGGUAG-AA 2881 GU(G-ACAG) ACC-UACC-G A-ACCUGGUG AUAGCU-GGU UGCCU--GAG AA-AUG-GAU 2941 (-AGAA)GUU CA-GC-CUCG CACC<----- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ------->-- ---|------ 3061 -|------|- ---------- ---------- --------(- --------)< ccccgaauca 3121 aa-------- -agaaguauc ac---ca--- ---------- ---------- ---------- 3181 ----agaugc uuaagggaaa ---------- ---------- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---->----- ---------- 3301 ---------- ---------- ----|----- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ------gu-g -CGAG-AGUU AGUUg--AA- GG-GG(-GUA 3481 CAG)CCCCUU CA-AC----- -aAAGG(AUA -CAA)CCU-u cccag-g-ag -ga-UAA--- 3541 --agaucaua auacaua-a- gacaca---- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ------cugu u<-------- ---------- ---------- 3721 ---------- ---------- ---------- ---------- -->CUAGU-G GGC(CUGAAA 3781 GC-A)-GCCA -uCUA|A(G- CA)-|GAAAG C(--GUUAAA )GC|-UCAg- acag--<--- 3841 --aaguaaau uuauuauacc gauaaacaa- ---------- ---------- ---------- 3901 ->-------- -------|-- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- ---------- 4021 ---------- ---------- ---------- ---------- ---------- ---------- 4081 -------|uc uuac--ucc| c--c-ua|-- ---------- ---------- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- ---------- ---------- ---------- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- -----auugu auCAG-GC|- cg-ACCCAUG ---------- 4501 ---------- ---------- -cccg----- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ------->-- ---------- ---------| CAUGGAAGAG AUUAUGC-UA 4681 AA|AUGAGUA -ACAA-GAA- ga-------- (-ccugaucu ---------- ---------- 4741 ---------- -----)---- ---uc-|ucc ----cg-CCA CAA--gugua a|----acca 4801 gauc----gg ---------- ----(--acc aa)c-c|--g cuggaa---- ---------- 4861 ---cuuaa-- -cga------ ---------- -------(-- ---------- ------)<-- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 >--------- ---------- ---------- ----(----- ---------- ---------- 5041 ---------- ---------- ----)----- |-----|--- ---------- |--<------ 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ---------- ---------- 5221 ---------- ---------- ---------- ---------- ---------- ---------- 5281 ---------- ---------- ---------- ---------- ---------- ---------- 5341 ---------- ---------- ---------- ---------- ---------- ---------- 5401 ---------- ---------- ------->-- ---------- ---------- ---------- 5461 -----(---- ------)--- ---|------ --------|- ---------- -(-----)-- 5521 |--------- ---------- ---------- -----(---- )--------- ---------- 5581 --<------- ---------- ---------- ---------- ---------- ---------- 5641 ---------- ---------- ------->-- ---------- ---------- ---<------ 5701 ---------- acccaacuca agagggcaau gugaauaaua aagaccccaa gaagaacuca 5761 caacuaaaug a--------- ---------- ---------- ---------- ---------- 5821 ---------- ---------- ---------- ---------- ---------- ---------- 5881 ---------- ---------- ---------- ---------- ---------- ---------- 5941 ---------- ---------- ---------- ---------- ---------- ---------- 6001 ---------- ---------- ---------- ---------- ---------- ---------- 6061 ---------- ---------- ---------- ---------- ---------- ---------- 6121 ---------- ---------- ---------- ---------- ---------- ---------- 6181 ---------- ---------- ---------- ---------- ---------- ---------- 6241 ---------- ---------- ---------- ---------- ---------- ---------- 6301 ---------- ---------- ---------- ---------- ---------- ---------- 6361 ---------- ---------- ---------- ---------- ---------- ---------- 6421 ---------- ---------- ------>--- ---------- ---------- --ucgu-|-- 6481 ---UAACCC- -(CACACU)G G|AGUGC--- ----(cauuu uaag--)--- -----ggaa| 6541 |---AGAC-U A--AAAGAAA -GGGA-AGGA ACUCGGCAAA ---------- ---------- 6601 ---------- ---------- ---------- ---------- ---------- ---------- 6661 ---------- ---------- ---------- ---------- ---------- ---------- 6721 ---------- ---------- ---------- ---------- ---------- ---------- 6781 ------(--- )--------c acAAGCCU|C GC---CUG-U UU(ACCAA)A AA-CAUC-GC 6841 CUCCUG|C-- ---------- ---------- (aacuagauu ga----)--- ---------- 6901 ------GUA- UAG-GAGGUC CAGCCU<--- ---------- ---------- ---------- 6961 ---------- ---------- -------->G CC-CA-GU|G AC-------- ---------- 7021 ---------- --(------- ---------- ---------- ---------- ---------- 7081 ---------- ---------- --------ua cgg)------ ---------- ---------| 7141 ---GUUC-AA C-|GG-C|-C -GCGGU-(AU -UUUG)ACCG UG|C(AAA)- GG-UAGCGCA 7201 AUC-AC-U-U |GUCUCU(-U AAAU-)AGAG AC|CU-GUAU GAAUGGCUAG A-CGAGGGCU 7261 UA-------- ---------- -------ACU GUCUCCCCCU UCCA-GU-CA ----GUGAAA 7321 UU|G|AUCUA UC-CG(U-GC AGAAG)CGGG UAU----AAU AGUACAAGAC GAGAAG-ACC 7381 CUUUGG-|-A GCUUA--AGG UA|-caaaau uca--g---- ---------- ---------- 7441 ---------- ---------- ---------- ---------- ---------- ---------- 7501 ---------- ---------- ---------- --<------- ------ccac guuaa-acga 7561 cu-ccuuaag aagcaagaac uuagugg-cc g--------- ---------- ---------- 7621 ---------- ---------- ---------- ---------- ---------- ---------- 7681 ---------- ---------- ---------- ---------- ---------- ---------- 7741 ---------- ---------- ---------- ---------- ---------- ---------- 7801 ---------- ---------- ---------- ---------- ---------- ---------- 7861 ---------- ---------- ---------- ---------- ---------- ---------- 7921 ---------- ---------- ---------- ---------- ---------- ---------- 7981 ---------- ---------- ---------- ---------- ---------- ---------- 8041 ---------- ---------- ---------- ---------- ---------- ---------- 8101 ---------- ---------- ---------- ----u-gaaa uuu---U-AC CUUCGGUUG( 8161 GGG)CG-AC- C|ACGGAG(- --------GA AAAAUGAGC- )CUCC-GA|G |u|gg---|< 8221 ---------- ---------- ---------- ---------- ---------- ---------- 8281 ---------- ---------- ---------- ---------- ---------- ------auug 8341 ggccaaac-- cccua----- ---------- ---------- ---------- ---------- 8401 ---------- ---------- ---------- ---------- ---------- ---------- 8461 ---------- ---------- ---------- ---------- ---------- ---------- 8521 ---------- ---------- ---------- ---------- ---------- ---------- 8581 ---------- ---------- ---------- ---------- ---------- ---------- 8641 ---------- ---------- ---------- ---------- ---------- ---------- 8701 ---------- ---------- ---------- ---------- --|------- ---------- 8761 --------aa gccaa-gag( -aaacau--- )cucua-agc -cgcagaaua ucug------ 8821 ---------- ---------- ---------- ---------- ---------- --------ac 8881 c|---aauaa UGAUC-cgac u--------- ---------- ---(------ ---------- 8941 ---------- ---------- ---------- ---------- -------aaa a-)--|--ag 9001 ucgAUCAAC- |GAA-CCAAG UUACCC|UAG G|GAUAACAG |C-GCA-A-U CCUCUCCCAG 9061 AG(C--CCAU )AUCGACGAG --GGGGUUUA CG-ACCUCGA UGUU|GG--A U|C|AGGAC| 9121 AU-CC-UAAU GG-UG(--CA -GC)CGCUAU UAAG-GGU|U CGUU(UGUUC )AACGA-UUA 9181 A--AGUCCU- --ACGUGAUC UGAGUUCAGA CC|GG-A(GC AA)UCCAGGU CAGUUUCUAU 9241 CU|GUA---- --|-|<---- ---------- ---------- ---------- -----acgc- 9301 >--------- ---------- -uA-CUU-UU CC--(CAGU- AC(-GAAA)G GAUC-)GGAA 9361 A--AG-- ggggccu-au gc-------- 9421 -|-------- (-----) 9541 ---------- ---------- gcau-gcccc gcc------- ---------- -------ccu 9601 ---------- ---aauugau (gaaaac--a aauaa)a-uu -aa-gugaag g--------- 9661 ---------- -------<-- ----gaggg- ---------- ---------- ---------- 9721 ---------- ---------- ---------- ---------- ---------- ---------- 9781 ---------- ---------- ---------- ---------- ---------- ---------- 9841 ---------- ---------- ---------- ---------- ---------- ---------- 9901 -------cca aaaccccuac c----->--| ------(--- )--------- -------|gc 9961 cc-(gauaga a--)-gggca ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10021 ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~~~ 10141 ~~~~~~~~~~ ~~~~~~~~~~ ~)~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10201 ~~~~~~~~~~ ~|~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10321 ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ||||| // LOCUS mt.S.copei 10775 bp RNA RNA 02-JUN-1998 DEFINITION Mitochondrion Snyderichthys copei.; . ACCESSION AF0384 8 KEYWORDS . SOURCE Mitochondrion Snyderichthys copei. ORGANISM Mitochondrion Snyderichthys copei. REFERENCE 1 (bases 1 to 1755) AUTHORS Simons,A.M. and Mayden,R.L. TITLE Phylogenetic Relationships of the Western North American Phoxinins (Actinopterygii: Cyprinidae) as Inferred from Mitochondrial 12S and 16S Ribosomal RNA Sequences JOURNAL Mol. Phylogenet. Evol. (1998) In press STANDARD No information REFERENCE 2 (bases 1 to 1755) AUTHORS Simons,A.M. and Mayden,R.L. TITLE Direct Submission JOURNAL Submitted (15-DEC-1997) Department of Biological Sciences, The University of Alabama, Box 870344, Tuscaloosa, AL 35487-0344, USA STANDARD No information COMMENTS Sequence information (bases 1 to 10775) Corresponding GenBank entry: AF038498 BASE COUNT 556 a 393 c 388 g 365 t 9073 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~ug caaauuggau ca-cccugaG C--------- ----cgacca 301 |gcu--agc| cu-------- -|-------- ---------- ---------| -----(---- 361 ---------) -|-------- -------|-- -------(-- ---------- ---------- 421 -------)-- ---------- ---------- ---------- ---------- -----(---- 481 )---|----- --(-----)- ---------- ---------- ---------- -(------)- 541 ---------- ---------- ---- ---------- |------aau 841 uAA(ACCA)U UuU------- ---------- ---------- ---------- --------uu 901 ------(--- --)------- |uac-cugA- -GUAU-G(-G GAGA)CAGAA -agggu---- 961 -------<-- --ucacccc- ---------- ---------- ---------- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- --->------ 1201 ---------- ---------- ---------- ---------< ---------- ---------- 1261 ---------- ---------- ---------> (------)-- ---------- ---|-(---) 1321 -------(-- -----)---- ---------- ---------- ---------- --<------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- >--------- ------(--- ---------- 1561 -------)-- ---------- ---------- -(-------) ---------- ---------- 1621 ---------- --AGAGCAGU AGAG-AA--- ---AGUACC( -GCAA-)GG- ---AAA-GC- 1681 ugaaagagaa gugaaauaac ccaua----- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- -----uaa-G U-AAAA ACAAAG---- --------<- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------> (--acuagac 2041 --)------- -----CUU-G UACCUU(UU- GCAUC)AUGA |UUU-AGCAA GUacc--cu- 2101 caagcgaag- ---------- -------(-- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- -)-------- ---------- 2521 ----(----- )-----<--- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- agac->---- --(------) ---------- ---------- -cuuuaguuu 2701 gaa-acCCCG AA-ACCAA-G UG-AGCUACC CCG-AGA-CA GCCU------ ---------- 2761 -(-------- ---------- ---------- --------au auuaauuua) ---------- 2821 -GGGCUAA-C CC-GUCUCU( GUGGCAA-A) AGAG-UGGGA --AGAGCUC- CGGGUAG-AA 2881 GU(G-ACAG) ACC-UACC-G A-ACUUGGUG AUAGCU-GGU UGCCU--GAG AA-GUG-GAU 2941 (-AGAA)GUU CA-GC-CUUA UGCC<----- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ------->-- ---|------ 3061 -|------|- ---------- ---------- --------(- --------)< ccccggauca 3121 aa-------- -g---aauau auuauua--- ---------- ---------- ---------- 3181 ----agauac ucugggcgau ---------- ---------- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---->----- ---------- 3301 ---------- ---------- ----|----- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ------ac-g -uGAG-AGUU AGUUG--AA- GG-GG(-GUA 3481 CAG)CCCCUU UA-AC----- -aAAGG(AUA -CAA)CCU-u cacag-g-ag -ga-UAA--- 3541 --agaucaua auauaca-a- gacaua---- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ------cugu u<-------- ---------- ---------- 3721 ---------- ---------- ---------- ---------- -->CUAGU-G GGC(CUGAAA 3781 GC-A)-GCCA -cCUA|A(G- CA)-|GAAAG C(--GUUAAA )GC|-UCAg- acag--<--- 3841 --agagaagu uuauuauacc gauaaguaa- ---------- ---------- ---------- 3901 ---------- -------|-- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- ---------- 4021 ---------- ---------- ---------- ---------- ---------- ---------- 4081 -------|uc uuau--ucc| c--c-ua|-- ---------- ---------- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- ---------- ---------- ---------- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- -----acugu auCAG-AC|- CA-ACCCAUG ---------- 4501 ---------- ---------- (ccug----- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- ---------- ---------| CAUG-AAGAG AUUAUGC-UA 4681 AA|AUGAGUA -ACAA-GAA- ga-------- (-ccugcucu ---------- ---------- 4741 ---------- -----)---- ---uc-|ucc ----cg-GCA CAA--gugua a|----acca 4801 gauc----gg ---------- ----(--acc aa)c-c|--a cuggaa---- ---------- 4861 ---auuaa-- -cga------ ---------- -------(-- ---------- ------)<-- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 >--------- ---------- ---------- ----(----- ---------- ---------- 5041 ---------- ---------- ----)----- |-----|--- ---------- |--<------ 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ---------- ---------- 5221 ---------- ---------- ---------- ---------- ---------- ---------- 5281 ---------- ---------- ---------- ---------- ---------- ---------- 5341 ---------- ---------- ---------- ---------- ---------- ---------- 5401 ---------- ---------- ------->-- ---------- ---------- ---------- 5461 -----(---- ------)--- ---|------ --------|- ---------- -(-----)-- 5521 |--------- ---------- ---------- -----(---- )--------- ---------- 5581 --<------- ---------- ---------- ---------- ---------- ---------- 5641 ---------- ---------- ------->-- ---------- ---------- ---<------ 5701 ---------- acccaaccca agaggguacu gugaacaaua uaaaccucaa gaagaccuca 5761 caaucaagca a--------- ---------- ---------- ---------- ---------- 5821 ---------- ---------- ---------- ---------- ---------- ---------- 5881 ---------- ---------- ---------- ---------- ---------- ---------- 5941 ---------- ---------- ---------- ---------- ---------- ---------- 6001 ---------- ---------- ---------- ---------- ---------- ---------- 6061 ---------- ---------- ---------- ---------- ---------- ---------- 6121 ---------- ---------- ---------- ---------- ---------- ---------- 6181 ---------- ---------- ---------- ---------- ---------- ---------- 6241 ---------- ---------- ---------- ---------- ---------- ---------- 6301 ---------- ---------- ---------- ---------- ---------- ---------- 6361 ---------- ---------- ---------- ---------- ---------- ---------- 6421 ---------- ---------- ------>--- ---------- ---------- --ucgu-|-- 6481 ---UAACCU- -(CACACU)A G|CGUGC--- ----(cguuu uaag--)--- -----ggaa| 6541 |---AGAC-U A--AAAGAAG -GGGA-AGGA ACUCGGCAAA ---------- ---------- 6601 ---------- ---------- ---------- ---------- ---------- ---------- 6661 ---------- ---------- ---------- ---------- ---------- ---------- 6721 ---------- ---------- ---------- ---------- ---------- ---------- 6781 ------(--- )--------c acAAGCCU|C GC---CUG-U UU(ACCAA)A AA-CAUC-GC 6841 CUCCUG|C-- ---------- ---------- (aguuauuaa ------)--- ---------- 6901 ------GUA- UAG-GAGGUC CAGCCU<--- ---------- ---------- ---------- 6961 ---------- ---------- -------->G CC-CA-GU|G AC-------- ---------- 7021 ---------- --(------- ---------- ---------- ---------- ---------- 7081 ---------- ---------- --------ua cgg)------ ---------- ---------| 7141 ---GUUC-AA C-|GG-C|-C -GCGGU-(AU -UUUG)ACCG UG|C(AAA)- GG-UAGCGCA 7201 AUC-AC-U-U |GUCUCU(-U AAAU-)AGAG AC|CU-GUAU GAAUGGCUAG A-CGAGGGCU 7261 UA-------- ---------- -------ACU GUCUCCCCCC UCCA-GU-CA ----GUGAAA 7321 UU|G|AUCUA UC-CG(U-GC AGAAG)CGGG UGU----AAA UAUACAAGAC GAGAAG-ACC 7381 CUUUGG-|-A GCUUA--AGG UA|-caagau uca--g---- ---------- ---------- 7441 ---------- ---------- ---------- ---------- ---------- ---------- 7501 ---------- ---------- ---------- --<------- ------ccgc guuaa-acaa 7561 cu-cccuaaa aagcaagaac uuaguggcau a--------- ---------- ---------- 7621 ---------- ---------- ---------- ---------- ---------- ---------- 7681 ---------- ---------- ---------- ---------- ---------- ---------- 7741 ---------- ---------- ---------- ---------- ---------- ---------- 7801 ---------- ---------- ---------- ---------- ---------- ---------- 7861 ---------- ---------- ---------- ---------- ---------- ---------- 7921 ---------- ---------- ---------- ---------- ---------- ---------- 7981 ---------- ---------- ---------- ---------- ---------- ---------- 8041 ---------- ---------- ---------- ---------- ---------- ---------- 8101 ---------- ---------- ----->---- ----u-gaaa uuu---U-AC CUUCGGUUG( 8161 GGG)CG-AC- C|GCGGAG(- --------GA AAAGUAAGC- )CUCC-GA|G |u|gg---|< 8221 ---------- ---------- ---------- ---------- ---------- ---------- 8281 ---------- ---------- ---------- ---------- ---------- ------acug 8341 ggcgaa-a-- cccua----- ---------- ---------- ---------- ---------- 8401 ---------- ---------- ---------- ---------- ---------- ---------- 8461 ---------- ---------- ---------- ---------- ---------- ---------- 8521 ---------- ---------- ---------- ---------- ---------- ---------- 8581 ---------- ---------- ---------- ---------- ---------- ---------- 8641 ---------- ---------- ---------- ---------- ---------- ---------- 8701 ---------- ---------- ---------- ---------- --|------- ---------- 8761 --------aa gccga-gag( -agacau--- )cucua-ggc -cgcagaaua ucug------ 8821 ---------- ---------- ---------- ---------- ---------- --------ac 8881 c|---aauaa UGAUC-cggc ---------- ---------- ---(------ ---------- 8941 ---------- ---------- ---------- ---------- -------cgg a-)--|--ag 9001 ccgAUCAAC- |GGA-CCAAG UUACCC|UAG G|GAUAACAG |C-GCA-A-U CCUCUCCCAG 9061 AG(C--CCGU )AUCGACGAG --GGGGUUUA CG-ACCUCGA UGUU|GG--A U|C|AGGAC| 9121 AU-CC-UAAU GG-UG(--CA -GC)CGCUAU UAAG-GGU|U CGUU(UGUUC )AACGA-UUA 9181 A--AGUCCU- --ACGUGAUC UGAGUUCAGA CC|GG-A(GU AA)UCCAGGU CAGUUUCUAU 9241 CU|GUA---- --|-|<---- ---------- ---------- ---------- -----acgc- 9301 >--------- ---------- -uA-CUU-UU CC--(UAGU- AC(-GAAA)G GAUC-)GGAA 9361 A--AG-- ggggccu-au gc-------- 9421 -|-------- (-----) 9541 ---------- ---------a gcau-gcccc gcc------- ---------- -------ccu 9601 ---------- ---aauugau (gaggac--a aauaa)a-uu -aa-gcaaag g--------- 9661 ---------- -------<-- ----gaggg- ---------- ---------- ---------- 9721 ---------- ---------- ---------- ---------- ---------- ---------- 9781 ---------- ---------- ---------- ---------- ---------- ---------- 9841 ---------- ---------- ---------- ---------- ---------- ---------- 9901 -------cca aag-cccuac c----->--| ------(--- )--------- -------|gu 9961 cc-(gaaaua a--)-ggaca ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10021 ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~~~ 10141 ~~~~~~~~~~ ~~~~~~~~~~ ~)~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10201 ~~~~~~~~~~ ~|~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10321 ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ||||| // LOCUS mt.O.mic.1 10775 bp RNA RNA 02-JUN-1998 DEFINITION Mitochondrion Orthodon microlepidotus.; . ACCESSION AF0384 8 KEYWORDS . SOURCE Mitochondrion Orthodon microlepidotus. ORGANISM Mitochondrion Orthodon microlepidotus. REFERENCE 1 (bases 1 to 2721) AUTHORS Simons,A.M. and Mayden,R.L. TITLE Phylogenetic Relationships of the Western North American Phoxinins (Actinopterygii: Cyprinidae) as Inferred from Mitochondrial 12S and 16S Ribosomal RNA Sequences JOURNAL Mol. Phylogenet. Evol. (1998) In press STANDARD No information REFERENCE 2 (bases 1 to 2721) AUTHORS Simons,A.M. and Mayden,R.L. TITLE Direct Submission JOURNAL Submitted (15-DEC-1997) Department of Biological Sciences, The University of Alabama, Box 870344, Tuscaloosa, AL 35487-0344, USA STANDARD No information COMMENTS Sequence information (bases 1 to 10775) Corresponding GenBank entry: AF038488 BASE COUNT 594 a 392 c 365 g 359 t 9065 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~ug caaguuggau ca-cccugaG C--------- ----caaaca 301 |gcu--agc| uu-------- -|-------- ---------- ---------| -----(---- 361 ---------) -|-------- -------|-- -------(-- ---------- ---------- 421 -------)-- ---------- ---------- ---------- ---------- -----(---- 481 )---|----- --(-----)- ---------- ---------- ---------- -(------)- 541 ---------- ---------- ---- ---------- |------aac 841 uAA(ACCA)U Uuu------- ---------- ---------- ---------- --------uu 901 ------(--- --)------- |uac-cuaA- -GUAC-G(-G GAGA)CGGAA -aaggu---- 961 -------<-- --ucaaucu- ---------- ---------- ---------- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- --->------ 1201 ---------- ---------- ---------- ---------< ---------- ---------- 1261 ---------- ---------- ---------> (------)-- ---------- ---|-(---) 1321 -------(-- -----)---- ---------- ---------- ---------- --<------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- >--------- ------(--- ---------- 1561 -------)-- ---------- ---------- -(-------) ---------- ---------- 1621 ---------- --AGAGCGAU AGAG-AA--- ---AGUACC( -GCAA-)GG- ---AAA-GC- 1681 ugaaagagaa augaaacaac ccaua----- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- -----uaa-G C-AAAA ACAAAG---- --------<- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------> (--acuaaac 2041 --)------- -----CUU-G UACCUU(UU- GCAUC)AUGA |UUU-AGCCA GCacc--cu- 2101 caagcaaag- ---------- -------(-- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- -)-------- ---------- 2521 ----(----- )-----<--- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- agac->---- --(------) ---------- ---------- -cuuuaguuu 2701 gac-gcCCCG AA-ACCAG-G UG-AGCUACC CCG-AGA-CA GCCU------ ---------- 2761 -(-------- ---------- ---------- --------aa acua-auua) ---------- 2821 -GGGCUAA-C CC-GUCUCU( GUGGCAA-A) AGAG-UGGGA --AGAGCUC- CGGGUAG-AA 2881 GU(G-ACAG) ACC-UACC-G A-ACCUGGUG AUAGCU-GGU UCUCU--GAG AA-GUG-GAU 2941 (-AGAA)GUU CA-GC-CUCA UAcg<----- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ------->-- ---|------ 3061 -|------|- ---------- ---------- --------(- --------)< ccccaaauca 3121 a--------- -cauguaua- uuauu-a--- ---------- ---------- ---------- 3181 ----agauac caggagaaau ---------- ---------- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---->----- ---------- 3301 ---------- ---------- ----|----- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ------AU-A -UGAG-AGUU AGUUA--AA- AG-GG(-GUA 3481 CAG)CCCUUU UA-AC----- -aAAGG(AUA -CAA)CCU-u cacag-g-ag -ga-UAA--- 3541 --agaucaua auauaua-a- aacaua---- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ------cugu u<-------- ---------- ---------- 3721 ---------- ---------- ---------- ---------- -->UUAGU-G GGC(CUAAAA 3781 GC-A)-GCCA -uCUA|A(A- UA)-|GAAAG C(--GUUAAA )GC|-uCag- acag--<--- 3841 --aaagaagu uuauuauacc gauagaaaa- ---------- ---------- ---------- 3901 ->-------- -------|-- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- ---------- 4021 ---------- ---------- ---------- ---------- ---------- ---------- 4081 -------|uc uuac--ucc| c--c-ua|-- ---------- ---------- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- ---------- ---------- ---------- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- -----auuau auCAG-AU|- CA-ACCCAUG ---------- 4501 ---------- ---------- (ccca---)< ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ------->-- ---------- ---------| CAUGGAAGAG AUUAUGC-UA 4681 AA|AUGAGUA -ACAA-GAA- ga-------- (-ccugcucu ---------- ---------- 4741 ---------- -----)---- ---uc-|ucc ----ua-GCA CAA--gugua a|----gcca 4801 gauc----gg ---------- ----(--aca aa)c-c|--a cuggaa---- ---------- 4861 ---auuaa-- -cga------ ---------- -------(-- ---------- ------)<-- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 >--------- ---------- ---------- ----(----- ---------- ---------- 5041 ---------- ---------- ----)----- |-----|--- ---------- |--<------ 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ---------- ---------- 5221 ---------- ---------- ---------- ---------- ---------- ---------- 5281 ---------- ---------- ---------- ---------- ---------- ---------- 5341 ---------- ---------- ---------- ---------- ---------- ---------- 5401 ---------- ---------- ------->-- ---------- ---------- ---------- 5461 -----(---- ------)--- ---|------ --------|- ---------- -(-----)-- 5521 |--------- ---------- ---------- -----(---- )--------- ---------- 5581 --<------- ---------- ---------- ---------- ---------- ---------- 5641 ---------- ---------- ------->-- ---------- ---------- ---<------ 5701 ---------- gcccaaccca agagggcaau gugaacaaca aagaccccaa gaagaacuca 5761 caaguaagcu a--------- ---------- ---------- ---------- ---------- 5821 ---------- ---------- ---------- ---------- ---------- ---------- 5881 ---------- ---------- ---------- ---------- ---------- ---------- 5941 ---------- ---------- ---------- ---------- ---------- ---------- 6001 ---------- ---------- ---------- ---------- ---------- ---------- 6061 ---------- ---------- ---------- ---------- ---------- ---------- 6121 ---------- ---------- ---------- ---------- ---------- ---------- 6181 ---------- ---------- ---------- ---------- ---------- ---------- 6241 ---------- ---------- ---------- ---------- ---------- ---------- 6301 ---------- ---------- ---------- ---------- ---------- ---------- 6361 ---------- ---------- ---------- ---------- ---------- ---------- 6421 ---------- ---------- ------>--- ---------- ---------- --ucgu-|-- 6481 ---UAACCC- -(CACACU)G G|AGUGC--- ----(cauuu uauaaa)--- -----ggaa| 6541 |---AGAC-U A--AAAGAGA -GGGA-AGGA ACUCGGCAAA ---------- ---------- 6601 ---------- ---------- ---------- ---------- ---------- ---------- 6661 ---------- ---------- ---------- ---------- ---------- ---------- 6721 ---------- ---------- ---------- ---------- ---------- ---------- 6781 ------(--- )--------c acAAGCCU|C GC---CUG-U UU(ACCAA)A AA-CAUC-GC 6841 CUCCUG|C-- ---------- ---------- (aacuagacu ga----)--- ---------- 6901 ------GUA- UAG-GAGGUC CAGCCU<--- ---------- ---------- ---------- 6961 ---------- ---------- -------->G CC-CA-GU|G AC-------- ---------- 7021 ---------- --(------- ---------- ---------- ---------- ---------- 7081 ---------- ---------- --------ua cgg)------ ---------- ---------| 7141 ---GUUC-AA C-|GG-C|-C -GCGGU-(AU -UUUG)ACCG UG|C(AAA)- GG-UAGCGCA 7201 AUC-AC-U-U |GUCUCU(-U AAAU-)AGAG AC|CU-GUAU GAAUGGCUAG A-CGAGGGCU 7261 UA-------- ---------- -------ACU GUCUCCCCCC UUAA-GU-CA ----GUGAAA 7321 UU|G|AUCUA UC-CG(U-GC AGAAG)CGGG UAU----GAC CAUACAAGAC GAGAAG-ACC 7381 CUUUGG-|-A GCUUA--AGG UA|-caaaau uua--a---- ---------- ---------- 7441 ---------- ---------- ---------- ---------- ---------- ---------- 7501 ---------- ---------- ---------- --<------- ------ucac guuaa-acaa 7561 cu-ucauaaa aagugagaac uuagugacag a--------- ---------- ---------- 7621 ---------- ---------- ---------- ---------- ---------- ---------- 7681 ---------- ---------- ---------- ---------- ---------- ---------- 7741 ---------- ---------- ---------- ---------- ---------- ---------- 7801 ---------- ---------- ---------- ---------- ---------- ---------- 7861 ---------- ---------- ---------- ---------- ---------- ---------- 7921 ---------- ---------- ---------- ---------- ---------- ---------- 7981 ---------- ---------- ---------- ---------- ---------- ---------- 8041 ---------- ---------- ---------- ---------- ---------- ---------- 8101 ---------- ---------- ----->---- ----u-aaaa uuu---U-AC CUUCGGUUG( 8161 GGG)CG-AC- C|GCGGAG(- --------GA AAAGCAAGC- )CUCC-GA|G |u|gg---|< 8221 ---------- ---------- ---------- ---------- ---------- ---------- 8281 ---------- ---------- ---------- ---------- ---------- ------acug 8341 ggccaaac-- cccua----- ---------- ---------- ---------- ---------- 8401 ---------- ---------- ---------- ---------- ---------- ---------- 8461 ---------- ---------- ---------- ---------- ---------- ---------- 8521 ---------- ---------- ---------- ---------- ---------- ---------- 8581 ---------- ---------- ---------- ---------- ---------- ---------- 8641 ---------- ---------- ---------- ---------- ---------- ---------- 8701 ---------- ---------- ---------- ---------- --|------- ---------- 8761 --------aa gcuaa-cag( -agacac--- )cugua-agc -cgcagaaua ucug------ 8821 ---------- ---------- ---------- ---------- ---------- --------ac 8881 c|---aaaag UGAUC-cgac c--------- ---------- ---(------ ---------- 8941 ---------- ---------- ---------- ---------- -------aca ag)--|--ag 9001 ucgAUCAAC- |GGA-CCAAG UUACCC|UAG G|GAUAACAG |C-GCA-A-U CCCCUCCCAG 9061 AG(U--CCAU )AUCGACGAG --GGGGUUUA CG-ACCUCGA UGUU|GG--A U|C|AGGAC| 9121 AU-CC-UAAU GG-UG(--CA -GC)CGCUAU UAAG-GGU|U CGUU(UGUUC )AACGA-UUA 9181 A--AGUCCU- --ACGUGAUC UGAGUUCAGA CC|GG-A(GC AA)UCCAGGU CAGUUUCUAU 9241 CU|GUA---- --|-|<---- ---------- ---------- ---------- -----acgc- 9301 >--------- ---------- -uA-CUU-Uu CC--(UAGU- AC(-GAAA)G GAUU-)GGAA 9361 A--AG-- ggggccu-au acc------- 9421 -|-------- (-----) 9541 ---------- ---------- gcac-gcccc gcc------- ---------- -------cca 9601 ---------- ---aauuaau (gaaaac--a aauaa)a-uu -aa-guaaag g--------- 9661 ---------- -------<-- ----gaggg- ---------- ---------- ---------- 9721 ---------- ---------- ---------- ---------- ---------- ---------- 9781 ---------- ---------- ---------- ---------- ---------- ---------- 9841 ---------- ---------- ---------- ---------- ---------- ---------- 9901 -------cca aaaccccugc c----->--| ------(--- )--------- -------|gu 9961 uc-(aagaua a--)-ggaca ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10021 ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~~~ 10141 ~~~~~~~~~~ ~~~~~~~~~~ ~)~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10201 ~~~~~~~~~~ ~|~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10321 ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ||||| // LOCUS mt.O.mic.2 10775 bp RNA RNA 02-JUN-1998 DEFINITION Mitochondrion Orthodon microlepidotus.; . ACCESSION AF0384 9 KEYWORDS . SOURCE Mitochondrion Orthodon microlepidotus. ORGANISM Mitochondrion Orthodon microlepidotus. REFERENCE 1 (bases 1 to 2721) AUTHORS Simons,A.M. and Mayden,R.L. TITLE Phoxinins (Actinopterygii: Cyprinidae) as Inferred from Mitochondrial 12S and 16S Ribosomal RNA Sequences Phylogenetic Relationships of the Western North American JOURNAL Mol. Phylogenet. Evol. (1998) In press STANDARD No information REFERENCE 2 (bases 1 to 2721) AUTHORS Simons,A.M. and Mayden,R.L. TITLE Direct Submission JOURNAL Submitted (15-DEC-1997) Department of Biological Sciences, The University of Alabama, Box 870344, Tuscaloosa, AL 35487-0344, USA STANDARD No information COMMENTS Sequence information (bases 1 to 10775) Corresponding GenBank entry: AF038489 BASE COUNT 595 a 392 c 363 g 359 t 9066 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~ug caaguuggau ca-cccugaG C--------- ----caaaca 301 |gcu--agc| uu-------- -|-------- ---------- ---------| -----(---- 361 ---------) -|-------- -------|-- -------(-- ---------- ---------- 421 -------)-- ---------- ---------- ---------- ---------- -----(---- 481 )---|----- --(-----)- ---------- ---------- ---------- -(------)- 541 ---------- ---------- ---- ---------- |------aac 841 uAA(ACCA)U Uuu------- ---------- ---------- ---------- --------uu 901 ------(--- --)------- |uac-cuaA- -GUAC-G(-G GAGA)CGGAA -aaggu---- 961 -------<-- --ucaaucu- ---------- ---------- ---------- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- --->------ 1201 ---------- ---------- ---------- ---------< ---------- ---------- 1261 ---------- ---------- ---------> (------)-- ---------- ---|-(---) 1321 -------(-- -----)---- ---------- ---------- ---------- --<------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- >--------- ------(--- ---------- 1561 -------)-- ---------- ---------- -(-------) ---------- ---------- 1621 ---------- --AGAGCGAU AGAG-AA--- ---AGUACC( -GCAA-)GG- ---AAA-GC- 1681 ugaaagagaa augaaacaac ccaua----- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- -----uaa-G C-AAAA ACAAAG---- --------<- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------> (--acuaaac 2041 --)------- -----CUU-G UACCUU(UU- GCAUC)AUGA |UUU-AGCCA GCacc--cu- 2101 caagcaaag- ---------- -------(-- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- -)-------- ---------- 2521 ----(----- )-----<--- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- agac->---- --(------) ---------- ---------- -cuuuaguuu 2701 gac-gcCCCG AA-ACCAG-G UG-AGCUACC CCG-AGA-CA GCCU------ ---------- 2761 -(-------- ---------- ---------- --------aa acua-auua) ---------- 2821 -GGGCUAA-C CC-GUCUCU( GUGGCAA-A) AGAG-UGGGA --AGAGCUC- CGGGUAG-AA 2881 GU(G-ACAG) ACC-UACC-G A-ACCUGGUG AUAGCU-GGU UCUCU--GAG AA-GUG-GAU 2941 (-AGAA)GUU CA-GC-CUCA UACK<----- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ------->-- ---|------ 3061 -|------|- ---------- ---------- --------(- --------)< ccccaaauca 3121 a--------- -cauguaua- uuauu-a--- ---------- ---------- ---------- 3181 ----agauac caggagaaau ---------- ---------- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---->----- ---------- 3301 ---------- ---------- ----|----- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ------AU-A -UGAG-AGUU AGUUA--AA- AG-GG(-GUA 3481 CAG)CCCUUU UA-AC----- -aAAGG(AUA -CAA)CCU-u cacag-g-ag -ga-UAA--- 3541 --agaucaua auauaua-a- aacaua---- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ------cugu u<-------- ---------- ---------- 3721 ---------- ---------- ---------- ---------- -->UUAGU-G GGC(CUAAAA 3781 GC-A)-GCCA -uCUA|A(A- UA)-|GAAAG C(--GUUAAA )GC|-uCag- acag--<--- 3841 --aaagaagu uuauuauacc gauagaaaa- ---------- ---------- ---------- 3901 ->-------- -------|-- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- ---------- 4021 ---------- ---------- ---------- ---------- ---------- ---------- 4081 -------|uc uuac--ucc| c--c-ua|-- ---------- ---------- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- ---------- ---------- ---------- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- -----auuau auCAG-AU|- CA-ACCCAUG ---------- 4501 ---------- ---------- (ccca---)< ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ------->-- ---------- ---------| CAUGGAAGAG AUUAUGC-UA 4681 AA|AUGAGUA -ACAA-GAA- ga-------- (-ccugcucu ---------- ---------- 4741 ---------- -----)---- ---uc-|ucc ----ua-GCA CAA--gugua a|----gcca 4801 gauc----gg ---------- ----(--aca aa)c-c|--a cuggaa---- ---------- 4861 ---auuaa-- -cga------ ---------- -------(-- ---------- ------)<-- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 >--------- ---------- ---------- ----(----- ---------- ---------- 5041 ---------- ---------- ----)----- |-----|--- ---------- |--<------ 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ---------- ---------- 5221 ---------- ---------- ---------- ---------- ---------- ---------- 5281 ---------- ---------- ---------- ---------- ---------- ---------- 5341 ---------- ---------- ---------- ---------- ---------- ---------- 5401 ---------- ---------- ------->-- ---------- ---------- ---------- 5461 -----(---- ------)--- ---|------ --------|- ---------- -(-----)-- 5521 |--------- ---------- ---------- -----(---- )--------- ---------- 5581 --<------- ---------- ---------- ---------- ---------- ---------- 5641 ---------- ---------- ------->-- ---------- ---------- ---<------ 5701 ---------- gcccaaccca agagggcaau gugaacaaca aagaccccaa gaagaacuca 5761 caaguaagcu a--------- ---------- ---------- ---------- ---------- 5821 ---------- ---------- ---------- ---------- ---------- ---------- 5881 ---------- ---------- ---------- ---------- ---------- ---------- 5941 ---------- ---------- ---------- ---------- ---------- ---------- 6001 ---------- ---------- ---------- ---------- ---------- ---------- 6061 ---------- ---------- ---------- ---------- ---------- ---------- 6121 ---------- ---------- ---------- ---------- ---------- ---------- 6181 ---------- ---------- ---------- ---------- ---------- ---------- 6241 ---------- ---------- ---------- ---------- ---------- ---------- 6301 ---------- ---------- ---------- ---------- ---------- ---------- 6361 ---------- ---------- ---------- ---------- ---------- ---------- 6421 ---------- ---------- ------>--- ---------- ---------- --ucgu-|-- 6481 ---UAACCC- -(CACACU)G G|AGUGC--- ----(cauuu uauaaa)--- -----ggaa| 6541 |---AGAC-U A--AAAGAGA -GGGA-AGGA ACUCGGCAAA ---------- ---------- 6601 ---------- ---------- ---------- ---------- ---------- ---------- 6661 ---------- ---------- ---------- ---------- ---------- ---------- 6721 ---------- ---------- ---------- ---------- ---------- ---------- 6781 ------(--- )--------c acAAGCCU|C GC---CUG-U UU(ACCAA)A AA-CAUC-GC 6841 CUCCUG|C-- ---------- ---------- (aacuagacu ga----)--- ---------- 6901 ------GUA- UAG-GAGGUC CAGCCU<--- ---------- ---------- ---------- 6961 ---------- ---------- -------->G CC-CA-GU|G AC-------- ---------- 7021 ---------- --(------- ---------- ---------- ---------- ---------- 7081 ---------- ---------- --------ua cgg)------ ---------- ---------| 7141 ---GUUC-AA C-|GG-C|-C -GCGGU-(AU -UUUG)ACCG UG|C(AAA)- GG-UAGCGCA 7201 AUC-AC-U-U |GUCUCU(-U AAAU-)AGAG AC|CU-GUAU GAAUGGCUAG A-CGAGGGCU 7261 UA-------- ---------- -------ACU GUCUCCCCCC UUAA-GU-CA ----GUGAAA 7321 UU|G|AUCUA UC-CG(U-GC AGAAG)CGGG UAU----GAC CAUACAAGAC GAGAAG-ACC 7381 CUUUGG-|-A GCUUA--AGG UA|-caaaau uua--a---- ---------- ---------- 7441 ---------- ---------- ---------- ---------- ---------- ---------- 7501 ---------- ---------- ---------- --<------- ------ucac guuaa-acaa 7561 cu-ucauaaa aagugagaac uuagugacag a--------- ---------- ---------- 7621 ---------- ---------- ---------- ---------- ---------- ---------- 7681 ---------- ---------- ---------- ---------- ---------- ---------- 7741 ---------- ---------- ---------- ---------- ---------- ---------- 7801 ---------- ---------- ---------- ---------- ---------- ---------- 7861 ---------- ---------- ---------- ---------- ---------- ---------- 7921 ---------- ---------- ---------- ---------- ---------- ---------- 7981 ---------- ---------- ---------- ---------- ---------- ---------- 8041 ---------- ---------- ---------- ---------- ---------- ---------- 8101 ---------- ---------- ----->---- ----u-aaaa uuu---U-AC CUUCGGUUG( 8161 GGG)CG-AC- C|GCGGAG(- --------GA AAAACAAGC- )CUCC-GA|G |u|gg---|< 8221 ---------- ---------- ---------- ---------- ---------- ---------- 8281 ---------- ---------- ---------- ---------- ---------- ------acug 8341 ggccaaac-- cccua----- ---------- ---------- ---------- ---------- 8401 ---------- ---------- ---------- ---------- ---------- ---------- 8461 ---------- ---------- ---------- ---------- ---------- ---------- 8521 ---------- ---------- ---------- ---------- ---------- ---------- 8581 ---------- ---------- ---------- ---------- ---------- ---------- 8641 ---------- ---------- ---------- ---------- ---------- ---------- 8701 ---------- ---------- ---------- ---------- --|------- ---------- 8761 --------aa gcuaa-cag( -agacac--- )cugua-agc -cgcagaaua ucug------ 8821 ---------- ---------- ---------- ---------- ---------- --------ac 8881 c|---aaaag UGAUC-cgac c--------- ---------- ---(------ ---------- 8941 ---------- ---------- ---------- ---------- -------aca ag)--|--ag 9001 ucgAUCAAC- |GGA-CCAAG UUACCC|UAG G|GAUAACAG |C-GCA-A-U CCCCUCCCAG 9061 AG(U--CCAU )AUCGACGAG --GGGGUUUA CG-ACCUCGA UGUU|GG--A U|C|AGGAC| 9121 AU-CC-UAAU GG-UG(--CA -GC)CGCUAU UAAG-GGU|U CGUU(UGUUC )AACGA-UUA 9181 A--AGUCCU- --ACGUGAUC UGAGUUCAGA CC|GG-A(GC AA)UCCAGGU CAGUUUCUAU 9241 CU|GUA---- --|-|<---- ---------- ---------- ---------- -----acgc- 9301 >--------- ---------- -uA-CUU-UU CC--(UAGU- AC(-GAAA)G GAUU-)GGAA 9361 A--AG-- ggggccu-au acc------- 9421 -|-------- (-----) 9541 ---------- ---------- gcac-gcccc gcc------- ---------- -------cca 9601 ---------- ---aauuaau (gaaaac--a aauaa)a-uu -aa-guaaag g--------- 9661 ---------- -------<-- ----gaggg- ---------- ---------- ---------- 9721 ---------- ---------- ---------- ---------- ---------- ---------- 9781 ---------- ---------- ---------- ---------- ---------- ---------- 9841 ---------- ---------- ---------- ---------- ---------- ---------- 9901 -------cca aaaccccugc c----->--| ------(--- )--------- -------|gu 9961 uc-(aagaua a--)-ggaca ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10021 ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~~~ 10141 ~~~~~~~~~~ ~~~~~~~~~~ ~)~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10201 ~~~~~~~~~~ ~|~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10321 ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ||||| // LOCUS mt.P.neoga 10775 bp RNA RNA 02-JUN-1998 DEFINITION Mitochondrion Phoxinus neogaeus.; . ACCESSION AF0384 3 KEYWORDS . SOURCE Mitochondrion Phoxinus neogaeus. ORGANISM Mitochondrion Phoxinus neogaeus. REFERENCE 1 (bases 1 to 2714) AUTHORS Simons,A.M. and Mayden,R.L. TITLE Phoxinins (Actinopterygii: Cyprinidae) as Inferred from Mitochondrial 12S and 16S Ribosomal RNA Sequences Phylogenetic Relationships of the Western North American JOURNAL Mol. Phylogenet. Evol. (1998) In press STANDARD No information REFERENCE 2 (bases 1 to 2714) AUTHORS Simons,A.M. and Mayden,R.L. TITLE Direct Submission JOURNAL Submitted (15-DEC-1997) Department of Biological Sciences, The University of Alabama, Box 870344, Tuscaloosa, AL 35487-0344, USA STANDARD No information COMMENTS Sequence information (bases 1 to 10775) Corresponding GenBank entry: AF038493 BASE COUNT 585 a 379 c 363 g 378 t 9070 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~ug caaguuggau ua-cccugaG C--------- ----caaaca 301 |gcu--agc| uu-------- -|-------- ---------- ---------| -----(---- 361 ---------) -|-------- -------|-- -------(-- ---------- ---------- 421 -------)-- ---------- ---------- ---------- ---------- -----(---- 481 )---|----- --(-----)- ---------- ---------- ---------- -(------)- 541 ---------- ---------- ---- ---------- |------aau 841 uAA(ACCA)U Uuu------- ---------- ---------- ---------- --------uu 901 ------(--- --)------- |uac-cuaA- -GUAC-G(-G GAGA)CGGAA -aaggu---- 961 -------<-- --ccacuau- ---------- ---------- ---------- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- --->------ 1201 ---------- ---------- ---------- ---------< ---------- ---------- 1261 ---------- ---------- ---------> (------)-- ---------- ---|-(---) 1321 -------(-- -----)---- ---------- ---------- ---------- --<------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- >--------- ------(--- ---------- 1561 -------)-- ---------- ---------- -(-------) ---------- ---------- 1621 ---------- --AAAGCCAU AGAA-AA--- ---AGUACC( -GCAA-)GG- ---AAA-GC- 1681 ugaaagagaa augaaacaac ccaua----- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- -----uaa-G C-AAAA ACAAAG---- --------<- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------> (--acuaaac 2041 --)------- -----CUU-G UACCUU(UU- GCAUC)AUGA |UUU-AGCCA GCacc--cu- 2101 caagcaaag- ---------- -------(-- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- -)-------- ---------- 2521 ----(----- )-----<--- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- agac->---- --(------) ---------- ---------- -cuuuaguuu 2701 gga-acCCCG AA-ACCAG-G UG-AGCUACC CCG-AGA-CA GCCU------ ---------- 2761 -(-------- ---------- ---------- --------au auua-uuua) ---------- 2821 -GGGCUAA-C CC-GUCUCU( GUGGCAA-A) AGAG-UGGGA --AGAGCUC- CGGGUAG-AA 2881 GU(G-ACAG) ACC-UACC-G A-ACCUGGUG AUAGCU-GGU UAUCU--GAG AA-CUG-GAU 2941 (-AGAA)GUU CA-GC-CUCA UACA<----- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ------->-- ---|------ 3061 -|------|- ---------- ---------- --------(- --------)< cccccaaauc 3121 aagg-----a auauauuaug aagauauuaa gggc------ ---------- ---------- 3181 ----g----- ac-------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---->----- ---------- 3301 ---------- ---------- ----|----- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ------au-a -uGAG-AGUU AGUUA--AA- AG-GG(-GUA 3481 CAG)CCCUUU UG-AC----- -aAAGG(AUA -CAA)CCU-u cacag-g-ag -ga-UAA--- 3541 --agaucaua auauaua-a- aauaua---- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ------cugu u<-------- ---------- ---------- 3721 ---------- ---------- ---------- ---------- -->UUAGU-G GGC(CUGAAA 3781 GC-A)-GCCA -cCUA|A(A- UA)-|GAAAG C(--GUUAAA )GC|-uCgg- acag--<--- 3841 --aaagaagu uuauuauacc gauaaaaaa- ---------- ---------- ---------- 3901 ---------- -------|-- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- ---------- 4021 ---------- ---------- ---------- ---------- ---------- ---------- 4081 -------|uc uuau--ucc| c--c-ua|-- ---------- ---------- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- ---------- ---------- ---------- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- -----auugu auCAG-AU|- UA-ACCCAUG ---------- 4501 ---------- ---------- -ccua----- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- ---------- ---------| CAUGGAAGAA AUUAUGC-UA 4681 AA|AUGAGUA -ACAA-GAA- ga-------- (-ccugcucu ---------- ---------- 4741 ---------- -----)---- ---uc-|ucc ----ua-GCA CAA--gugua a|----gcca 4801 gauc----gg ---------- ----(--aca aa)c-c|--a cuggaa---- ---------- 4861 ---cuuaa-- -cga------ ---------- -------(-- ---------- ------)<-- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 >--------- ---------- ---------- ----(----- ---------- ---------- 5041 ---------- ---------- ----)----- |-----|--- ---------- |--<------ 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ---------- ---------- 5221 ---------- ---------- ---------- ---------- ---------- ---------- 5281 ---------- ---------- ---------- ---------- ---------- ---------- 5341 ---------- ---------- ---------- ---------- ---------- ---------- 5401 ---------- ---------- ------->-- ---------- ---------- ---------- 5461 -----(---- ------)--- ---|------ --------|- ---------- -(-----)-- 5521 |--------- ---------- ---------- -----(---- )--------- ---------- 5581 --<------- ---------- ---------- ---------- ---------- ---------- 5641 ---------- ---------- ------->-- ---------- ---------- ---<------ 5701 ---------- acccaaccua agagggcaau gugaacagua aagacuucaa gaagaacuca 5761 caa-uugaau a--------- ---------- ---------- ---------- ---------- 5821 ---------- ---------- ---------- ---------- ---------- ---------- 5881 ---------- ---------- ---------- ---------- ---------- ---------- 5941 ---------- ---------- ---------- ---------- ---------- ---------- 6001 ---------- ---------- ---------- ---------- ---------- ---------- 6061 ---------- ---------- ---------- ---------- ---------- ---------- 6121 ---------- ---------- ---------- ---------- ---------- ---------- 6181 ---------- ---------- ---------- ---------- ---------- ---------- 6241 ---------- ---------- ---------- ---------- ---------- ---------- 6301 ---------- ---------- ---------- ---------- ---------- ---------- 6361 ---------- ---------- ---------- ---------- ---------- ---------- 6421 ---------- ---------- ------>--- ---------- ---------- --ucgu-|-- 6481 ---UAACCC- -(CACACU)G G|AGUGC--- ----(uguuu uuaaa-)--- -----ggaa| 6541 |---AGAC-U A--AAAGAUA AGGGA-AGGA ACUCGGCAAA ---------- ---------- 6601 ---------- ---------- ---------- ---------- ---------- ---------- 6661 ---------- ---------- ---------- ---------- ---------- ---------- 6721 ---------- ---------- ---------- ---------- ---------- ---------- 6781 ------(--- )--------c acAAGCCU|C GC---CUG-U UU(ACCAA)A AA-CAUC-GC 6841 CUCCUG|C-- ---------- ---------- (aacuaaauu ga----)--- ---------- 6901 ------GUA- UAG-GAGGUC CAGCCU<--- ---------- ---------- ---------- 6961 ---------- ---------- -------->G CC-CA-GU|G AC-------- ---------- 7021 ---------- --(------- ---------- ---------- ---------- ---------- 7081 ---------- ---------- --------ua cgg)------ ---------- ---------| 7141 ---GUUC-AA C-|GG-C|-C -GCGGU-(AU -UUUG)ACCG UG|C(AAA)- GG-UAGCGCA 7201 AUC-AC-U-U |GUCUCU(-U AAAU-)AGAG AC|CU-GUAU GAAUGGCUAG A-CGAGGGCU 7261 UA-------- ---------- -------ACU GUCUCCCCCC UCCA-GU-CA ----GUGAAA 7321 UU|G|AUCUA UC-CG(U-GC AGAAG)CGGG UAU----AAU UAUACAAGAC GAGAAG-ACC 7381 CUUUGG-|-A GCUUA--AGG UA|-ca-aau uua--g---- ---------- ---------- 7441 ---------- ---------- ---------- ---------- ---------- ---------- 7501 ---------- ---------- ---------- --<------- ------ccac gucaa-acaa 7561 cu-cuauaga aaguaagaac uuaguggaca g--------- ---------- ---------- 7621 ---------- ---------- ---------- ---------- ---------- ---------- 7681 ---------- ---------- ---------- ---------- ---------- ---------- 7741 ---------- ---------- ---------- ---------- ---------- ---------- 7801 ---------- ---------- ---------- ---------- ---------- ---------- 7861 ---------- ---------- ---------- ---------- ---------- ---------- 7921 ---------- ---------- ---------- ---------- ---------- ---------- 7981 ---------- ---------- ---------- ---------- ---------- ---------- 8041 ---------- ---------- ---------- ---------- ---------- ---------- 8101 ---------- ---------- ----->---- ----u-aaca uuu---U-AC CUUCGGUUG( 8161 GGG)CG-AC- C|GCGGAG(- --------GA AAAACGAGC- )CUCC-GA|G |u|gg---|< 8221 ---------- ---------- ---------- ---------- ---------- ---------- 8281 ---------- ---------- ---------- ---------- ---------- ------acug 8341 ggccaa-a-- cccua----- ---------- ---------- ---------- ---------- 8401 ---------- ---------- ---------- ---------- ---------- ---------- 8461 ---------- ---------- ---------- ---------- ---------- ---------- 8521 ---------- ---------- ---------- ---------- ---------- ---------- 8581 ---------- ---------- ---------- ---------- ---------- ---------- 8641 ---------- ---------- ---------- ---------- ---------- ---------- 8701 ---------- ---------- ---------- ---------- --|------- ---------- 8761 --------aa gcuaa-uag( -guacac--- )cuaua-agc -cucagaauu ucug------ 8821 ---------- ---------- ---------- ---------- ---------- --------ac 8881 c|---aauaa UGAUC-cga- ---------- ---------- ---(------ ---------- 8941 ---------- ---------- ---------- ---------- -------cag aa)--|---g 9001 ucgAUCAAC- |GGA-CCAAG UUACCC|UAG G|GAUAACAG |C-GCA-A-U CCCCUCCCAG 9061 AG(G--CCAU )AUCGACGAG --GGGGUUUA CG-ACCUCGA UGUU|GG--A U|C|AGGAC| 9121 AU-CC-UAAU GG-UG(--CA -GC)CGCUAU UAAG-GGU|U CGUU(UGUUC )AACGA-UUA 9181 A--AGUCCU- --ACGUGAUC UGAGUUCAGA CC|GG-A(GU AA)UCCAGGU CAGUUUCUAU 9241 CU|GUA---- --|-|<---- ---------- ---------- ---------- -----acgc- 9301 >--------- ---------- -uA-CUU-UU CC--(UAGU- AC(-GAAA)G GAUU-)GGAA 9361 A--AG-- ggggccc-au ac-------- 9421 -|-------- (-----) 9541 ---------- ---------- gcac-gcccc gcc------- ---------- -------ccu 9601 ---------- ---aauuaau (gaaaac--a aauaa)a-uu -ga-guaaag g--------- 9661 ---------- -------<-- ----guggg- ---------- ---------- ---------- 9721 ---------- ---------- ---------- ---------- ---------- ---------- 9781 ---------- ---------- ---------- ---------- ---------- ---------- 9841 ---------- ---------- ---------- ---------- ---------- ---------- 9901 -------cca aaacccccgc c----->--| ------(--- )--------- -------|gc 9961 cc-(aagaga a--)-gggca ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10021 ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~~~ 10141 ~~~~~~~~~~ ~~~~~~~~~~ ~)~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10201 ~~~~~~~~~~ ~|~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10321 ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ||||| // LOCUS mt.P.eryth 10775 bp RNA RNA 02-JUN-1998 DEFINITION Mitochondrion Phoxinus erythrogaster.; . ACCESSION AF0384 0 KEYWORDS . SOURCE Mitochondrion Phoxinus erythrogaster. ORGANISM Mitochondrion Phoxinus erythrogaster. REFERENCE 1 (bases 1 to 2661) AUTHORS Simons,A.M. and Mayden,R.L. TITLE Phoxinins (Actinopterygii: Cyprinidae) as Inferred from Mitochondrial 12S and 16S Ribosomal RNA Sequences Phylogenetic Relationships of the Western North American JOURNAL Mol. Phylogenet. Evol. (1998) In press STANDARD No information REFERENCE 2 (bases 1 to 2661) AUTHORS Simons,A.M. and Mayden,R.L. TITLE Direct Submission JOURNAL Submitted (15-DEC-1997) Department of Biological Sciences, The University of Alabama, Box 870344, Tuscaloosa, AL 35487-0344, USA STANDARD No information COMMENTS Sequence information (bases 1 to 10775) Corresponding GenBank entry: AF038490 BASE COUNT 580 a 383 c 370 g 370 t 9072 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~ug caaauuggau ua-cccugaG C--------- ----caaaca 301 |gcu--agc| uu-------- -|-------- ---------- ---------| -----(---- 361 ---------) -|-------- -------|-- -------(-- ---------- ---------- 421 -------)-- ---------- ---------- ---------- ---------- -----(---- 481 )---|----- --(-----)- ---------- ---------- ---------- -(------)- 541 ---------- ---------- ---- ---------- |------aac 841 uAA(ACCA)U Uuu------- ---------- ---------- ---------- --------uu 901 ------(--- --)------- |uac-cuaA- -GUAC-G(-G GAGA)CGGAA -aaggu---- 961 -------<-- --ccauuau- ---------- ---------- ---------- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- --->------ 1201 ---------- ---------- ---------- ---------< ---------- ---------- 1261 ---------- ---------- ---------> (------)-- ---------- ---|-(---) 1321 -------(-- -----)---- ---------- ---------- ---------- --<------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- >--------- ------(--- ---------- 1561 -------)-- ---------- ---------- -(-------) ---------- ---------- 1621 ---------- --AAAGCAAU AGAA-AA--- ---AGUACC( -GCAA-)GG- ---AAA-GC- 1681 ugaaagagaa augaaacaac ccaua----- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- -----uaa-G C-AAAA ACAAAG---- --------<- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------> (--acuaaac 2041 --)------- -----CUU-G UACCUU(UU- GCAUC)AUGA |UUU-AGCCA GCacc--cu- 2101 caagcaaag- ---------- -------(-- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- -)-------- ---------- 2521 ----(----- )-----<--- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- agac->---- --(------) ---------- ---------- -cuuuaguuu 2701 gga-ucCCCG AA-ACCAG-G UG-AGCUACC CCG-AGA-CA GCCU------ ---------- 2761 -(-------- ---------- ---------- --------au auua-uuua) ---------- 2821 -GGGCUAA-C CC-GUCUCU( GUGGCAA-A) AGAG-UGGGA --GGAGCUC- CGGGUAG-AA 2881 GU(G-ACAG) ACC-UACC-G A-ACCUGGUG AUAGCU-GGU UAUCU--GAG AA-GUG-GAU 2941 (-AGAA)GUU CA-GC-CUCA UGUa<----- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ------->-- ---|------ 3061 -|------|- ---------- ---------- --------(- --------)< ccccaaguca 3121 agga-----a gauauuauua agauacua-- ---------- ---------- ---------- 3181 ----agggaa ac-------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---->----- ---------- 3301 ---------- ---------- ----|----- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ------AU-A -UGAG-AGUU AGUUA--AA- AG-GG(-GUA 3481 CAG)CCCUUU UA-AC----- -aAAGG(AUA -CAA)CCUuc uacag-g-ag -ga-UAA--- 3541 --agaucaua auauaua-a- aauaua---- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ------cugu u<-------- ---------- ---------- 3721 ---------- ---------- ---------- ---------- -->UUAGU-G GGC(CUGAAA 3781 GC-A)-GCCA -cCUA|A(U- UA)-|GAAAG C(--GUUAAA )GC|-uCgg- acag--<--- 3841 --acggaagu uuauuauacc gauaaaaaa- ---------- ---------- ---------- 3901 ->-------- -------|-- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- ---------- 4021 ---------- ---------- ---------- ---------- ---------- ---------- 4081 -------|uc uuac--ucc| c--c-ua|-- ---------- ---------- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- ---------- ---------- ---------- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- -----auuau auCAG-AU|- UA-ACCCAUG ---------- 4501 ---------- ---------- -ccua----- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ------->-- ---------- ---------| CAUGGAAGAA AUUAUGC-UA 4681 AA|AUGAGUA -ACAA-GAA- ga-------- (-ccugcucu ---------- ---------- 4741 ---------- -----)---- ---uc-|ucc ----ug-GCA CAA--gugua a|----acca 4801 gauc----gg ---------- ----(--aca ag)c-c|--g cuggaa---- ---------- 4861 ---cuuaa-- -cga------ ---------- -------(-- ---------- ------)<-- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 >--------- ---------- ---------- ----(----- ---------- ---------- 5041 ---------- ---------- ----)----- |-----|--- ---------- |--<------ 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ---------- ---------- 5221 ---------- ---------- ---------- ---------- ---------- ---------- 5281 ---------- ---------- ---------- ---------- ---------- ---------- 5341 ---------- ---------- ---------- ---------- ---------- ---------- 5401 ---------- ---------- ------->-- ---------- ---------- ---------- 5461 -----(---- ------)--- ---|------ --------|- ---------- -(-----)-- 5521 |--------- ---------- ---------- -----(---- )--------- ---------- 5581 --<------- ---------- ---------- ---------- ---------- ---------- 5641 ---------- ---------- ------->-- ---------- ---------- ---<------ 5701 ---------- acccaaccca agaggguaau gug--aacaa uagaggaccc caagaagaac 5761 ucacaacgc- a--------- ---------- ---------- ---------- ---------- 5821 ---------- ---------- ---------- ---------- ---------- ---------- 5881 ---------- ---------- ---------- ---------- ---------- ---------- 5941 ---------- ---------- ---------- ---------- ---------- ---------- 6001 ---------- ---------- ---------- ---------- ---------- ---------- 6061 ---------- ---------- ---------- ---------- ---------- ---------- 6121 ---------- ---------- ---------- ---------- ---------- ---------- 6181 ---------- ---------- ---------- ---------- ---------- ---------- 6241 ---------- ---------- ---------- ---------- ---------- ---------- 6301 ---------- ---------- ---------- ---------- ---------- ---------- 6361 ---------- ---------- ---------- ---------- ---------- ---------- 6421 ---------- ---------- ------>--- ---------- ---------- --ucgu-|-- 6481 ---UAACCC- -(CACACU)G G|AGUGC--- ----(uguuu uuaaa-)--- -----ggaa| 6541 |---AGAC-U A--AAAGAAA -GGGA-AGGA ACUCGGCAAA ---------- ---------- 6601 ---------- ---------- ---------- ---------- ---------- ---------- 6661 ---------- ---------- ---------- ---------- ---------- ---------- 6721 ---------- ---------- ---------- ---------- ---------- ---------- 6781 ------(--- )--------c acAAGCCU|C GC---CUG-U UU(ACCAA)A AA-CAUC-GC 6841 CUCCUG|C-- ---------- ---------- (aacuaaauu ga----)--- ---------- 6901 ------GUA- UAG-GAGGUC CAGCCU<--- ---------- ---------- ---------- 6961 ---------- ---------- -------->G CC-CA-GU|G AC-------- ---------- 7021 ---------- --(------- ---------- ---------- ---------- ---------- 7081 ---------- ---------- --------ua cgg)------ ---------- ---------| 7141 ---GUUC-AA C-|GG-C|-C -GCGGU-(AU -UUUG)ACCG UG|C(AAA)- GG-UAGCGCA 7201 AUC-AC-U-U |GUCUCU(-U AAAU-)AGAG AC|CU-GUAU GAACGGCUAG A-CGAGGGCU 7261 UA-------- ---------- -------ACU GUCUCCCCCC UCCA-GU-CA ----GUGAAA 7321 UU|G|AUCUA UC-CG(U-GC AGAAG)CGGG UAU----AAC UAUACAAGAC GAGAAG-ACC 7381 CUUUGG-|-A GCUUA--AGG UA|-ca-aau uua--g---- ---------- ---------- 7441 ---------- ---------- ---------- ---------- ---------- ---------- 7501 ---------- ---------- ---------- --<------- ------ccac guuaa-acaa 7561 cu-cuauaga aaguaagaac uuaguggaca g--------- ---------- ---------- 7621 ---------- ---------- ---------- ---------- ---------- ---------- 7681 ---------- ---------- ---------- ---------- ---------- ---------- 7741 ---------- ---------- ---------- ---------- ---------- ---------- 7801 ---------- ---------- ---------- ---------- ---------- ---------- 7861 ---------- ---------- ---------- ---------- ---------- ---------- 7921 ---------- ---------- ---------- ---------- ---------- ---------- 7981 ---------- ---------- ---------- ---------- ---------- ---------- 8041 ---------- ---------- ---------- ---------- ---------- ---------- 8101 ---------- ---------- ----->---- ----u-gaca uuu---U-AC CUUCGGUUG( 8161 GGG)CG-AC- C|ACGGAG(- --------GA AAAACAAGC- )CUCC-GA|G |u|gg---|< 8221 ---------- ---------- ---------- ---------- ---------- ---------- 8281 ---------- ---------- ---------- ---------- ---------- ------acug 8341 ggccaaau-- cccua----- ---------- ---------- ---------- ---------- 8401 ---------- ---------- ---------- ---------- ---------- ---------- 8461 ---------- ---------- ---------- ---------- ---------- ---------- 8521 ---------- ---------- ---------- ---------- ---------- ---------- 8581 ---------- ---------- ---------- ---------- ---------- ---------- 8641 ---------- ---------- ---------- ---------- ---------- ---------- 8701 ---------- ---------- ---------- ---------- --|------- ---------- 8761 --------aa gcuaa-uag( -gaacac--- )cuaua-agc -cgcagaauu ucug------ 8821 ---------- ---------- ---------- ---------- ---------- --------ac 8881 c|---aaaaa UGAUC-cggc ---------- ---------- ---(------ ---------- 8941 ---------- ---------- ---------- ---------- --------aa aa)--|---g 9001 ucgAUCAAC- |GAA-CCAAG UUACCC|UAG G|GAUAACAG |C-GCA-A-U CCCCUCCCAG 9061 AG(G--CCAU )AUCGACGAG --GGGGUUUA CG-ACCUCGA UGUU|GG--A U|C|AGGAC| 9121 AU-CC-UAAU GG-UG(--CA -GC)CGCUAU UAAG-GGU|U CGUU(UGUUC )AACGA-UUA 9181 A--AGUCCU- --ACGUGAUC UGAGUUCAGA CC|GG-A(GU AA)UCCAGGU CAGUUUCUAU 9241 CU|GUA---- --|-|<---- ---------- ---------- ---------- -----acgc- 9301 >--------- ---------- -uA-CUU-UU CC--(UAGU- AC(-GAAA)G GAUU-)GGAA 9361 A--AG-- ggggccc-au ac-------- 9421 -|-------- (-----) 9541 ---------- ---------- gcac-gcccc gcc------- ---------- -------ccu 9601 ---------- ---aauuaau (gaaaac--a aauaa)a-uu -ga-guaaag g--------- 9661 ---------- -------<-- ----gaggg- ---------- ---------- ---------- 9721 ---------- ---------- ---------- ---------- ---------- ---------- 9781 ---------- ---------- ---------- ---------- ---------- ---------- 9841 ---------- ---------- ---------- ---------- ---------- ---------- 9901 -------ccu aaacccccgc c----->--| ------(--- )--------- -------|gc 9961 cc-(aagaga a--)-gggca ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10021 ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~~~ 10141 ~~~~~~~~~~ ~~~~~~~~~~ ~)~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10201 ~~~~~~~~~~ ~|~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10321 ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ||||| // LOCUS mt.P.orego 10775 bp RNA RNA 02-JUN-1998 DEFINITION Mitochondrion Ptychocheilus oregonensis.; . ACCESSION AF0384 4 KEYWORDS . SOURCE Mitochondrion Ptychocheilus oregonensis. ORGANISM Mitochondrion Ptychocheilus oregonensis. REFERENCE 1 (bases 1 to 2718) AUTHORS Simons,A.M. and Mayden,R.L. TITLE Phoxinins (Actinopterygii: Cyprinidae) as Inferred from Mitochondrial 12S and 16S Ribosomal RNA Sequences Phylogenetic Relationships of the Western North American JOURNAL Mol. Phylogenet. Evol. (1998) In press STANDARD No information REFERENCE 2 (bases 1 to 2718) AUTHORS Simons,A.M. and Mayden,R.L. TITLE Direct Submission JOURNAL Submitted (15-DEC-1997) Department of Biological Sciences, The University of Alabama, Box 870344, Tuscaloosa, AL 35487-0344, USA STANDARD No information COMMENTS Sequence information (bases 1 to 10775) Corresponding GenBank entry: AF038494 BASE COUNT 593 a 382 c 363 g 373 t 9064 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~ug caaauugggu cg-cccugaG C--------- ----caaaca 301 |gcu--agc| uu-------- -|-------- ---------- ---------| -----(---- 361 ---------) -|-------- -------|-- -------(-- ---------- ---------- 421 -------)-- ---------- ---------- ---------- ---------- -----(---- 481 )---|----- --(-----)- ---------- ---------- ---------- -(------)- 541 ---------- ---------- ---- ---------- |------aac 841 uAA(ACCA)U Uuu------- ---------- ---------- ---------- --------uu 901 ------(--- --)------- |uac-cuaA- -GUAC-G(-G GAGA)CGGAA -aaggu---- 961 -------<-- --ucaaccu- ---------- ---------- ---------- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- --->------ 1201 ---------- ---------- ---------- ---------< ---------- ---------- 1261 ---------- ---------- ---------> (------)-- ---------- ---|-(---) 1321 -------(-- -----)---- ---------- ---------- ---------- --<------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- >--------- ------(--- ---------- 1561 -------)-- ---------- ---------- -(-------) ---------- ---------- 1621 ---------- --AAAGCAAU AGAG-AA--- ---AGUACC( -GCAA-)GG- ---AAA-GC- 1681 ugaaagagaa augaaacaac ccaua----- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- -----uaa-G C-AGAA ACAAAG---- --------<- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------> (--acuaaac 2041 --)------- -----CUU-G UACCUU(UU- GCAUC)AUGA |UUU-AGCCA GCacc--cu- 2101 caagcaaag- ---------- -------(-- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- -)-------- ---------- 2521 ----(----- )-----<--- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- agac->---- --(------) ---------- ---------- -cuuuaguuu 2701 gaa-acCCCG AA-ACCAG-G UG-AGCUACC CCG-AGA-CA GCCU------ ---------- 2761 -(-------- ---------- ---------- --------au auua-uuua) ---------- 2821 -GGGCUAA-C CC-GUCUCU( GUGGCAA-A) AGAG-UGGGA --AGAGCUC- CGGGUAG-AA 2881 GU(G-ACAG) ACC-UACC-G A-ACCUGGUG AUAGCU-GGU UAUCU--GAG AA-GUG-GAU 2941 (-AGAA)GUU CA-GC-CUCA UACG<----- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ------->-- ---|------ 3061 -|------|- ---------- ---------- --------(- --------)< ccccagauca 3121 a--------- uacguauguu auu---a--- ---------- ---------- ---------- 3181 ----agauac ucaagggaga u--------- ---------- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---->----- ---------- 3301 ---------- ---------- ----|----- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ------ac-a -uGAG-AGUU AGUUG--AA- AG-GG(-GUA 3481 CGG)CCCUUU UA-AC----- -aAAGG(AUA -CAA)CCU-u uacag-g-ag -ga-UAA--- 3541 --agaucaua auauaua-a- aacaua---- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ------cugu u<-------- ---------- ---------- 3721 ---------- ---------- ---------- ---------- -->UUAGU-G GGC(CUAAAA 3781 GC-A)-GCCA -cCUA|A(A- UA)-|GAAAG C(--GUUAAA )GC|-uCag- acag--<--- 3841 --aaagaagu uuauuauacc gauaaaaaa- ---------- ---------- ---------- 3901 ---------- -------|-- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- ---------- 4021 ---------- ---------- ---------- ---------- ---------- ---------- 4081 -------|uc uuau--ucc| c--c-ua|-- ---------- ---------- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- ---------- ---------- ---------- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- -----auuau auCAG-AU|- CA-ACCCAUG ---------- 4501 ---------- ---------- (ccca---)< ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ------->-- ---------- ---------| CAUGGAAGAG AUUAUGC-UA 4681 GA|AUGAGUA -ACAA-GAA- ga-------- (-ccugcgcu ---------- ---------- 4741 ---------- -----)---- ---uc-|ucc ----uu-GCA CAA--gugua a|----acca 4801 gauc----gg ---------- ----(--aca aa)c-c|--a cuggaa---- ---------- 4861 ---cuuaa-- -cga------ ---------- -------(-- ---------- ------)<-- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 >--------- ---------- ---------- ----(----- ---------- ---------- 5041 ---------- ---------- ----)----- |-----|--- ---------- |--<------ 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ---------- ---------- 5221 ---------- ---------- ---------- ---------- ---------- ---------- 5281 ---------- ---------- ---------- ---------- ---------- ---------- 5341 ---------- ---------- ---------- ---------- ---------- ---------- 5401 ---------- ---------- ------->-- ---------- ---------- ---------- 5461 -----(---- ------)--- ---|------ --------|- ---------- -(-----)-- 5521 |--------- ---------- ---------- -----(---- )--------- ---------- 5581 --<------- ---------- ---------- ---------- ---------- ---------- 5641 ---------- ---------- ------->-- ---------- ---------- ---<------ 5701 ---------- acccaaccca agagggcaau gug-aacaac aaaaaucuca agaagaacuc 5761 acaguuaaac uga------- ---------- ---------- ---------- ---------- 5821 ---------- ---------- ---------- ---------- ---------- ---------- 5881 ---------- ---------- ---------- ---------- ---------- ---------- 5941 ---------- ---------- ---------- ---------- ---------- ---------- 6001 ---------- ---------- ---------- ---------- ---------- ---------- 6061 ---------- ---------- ---------- ---------- ---------- ---------- 6121 ---------- ---------- ---------- ---------- ---------- ---------- 6181 ---------- ---------- ---------- ---------- ---------- ---------- 6241 ---------- ---------- ---------- ---------- ---------- ---------- 6301 ---------- ---------- ---------- ---------- ---------- ---------- 6361 ---------- ---------- ---------- ---------- ---------- ---------- 6421 ---------- ---------- ------>--- ---------- ---------- --ucgu-|-- 6481 ---UAACCC- -(CACACU)G G|AGUGC--- ----(uauuu uauaaa)--- -----ggaa| 6541 |---AGAC-U A--AAGGAUA -GGGA-AGGA ACUCGGCAAA ---------- ---------- 6601 ---------- ---------- ---------- ---------- ---------- ---------- 6661 ---------- ---------- ---------- ---------- ---------- ---------- 6721 ---------- ---------- ---------- ---------- ---------- ---------- 6781 ------(--- )--------c acAAGCCU|C GC---CUG-U UU(ACCAA)A AA-CAUC-GC 6841 CUCCUG|C-- ---------- ---------- (aacuaaacu ga----)--- ---------- 6901 ------GUA- UAG-GAGGUC CAGCCU<--- ---------- ---------- ---------- 6961 ---------- ---------- -------->G CC-CA-GU|G AC-------- ---------- 7021 ---------- --(------- ---------- ---------- ---------- ---------- 7081 ---------- ---------- --------ua cgg)------ ---------- ---------| 7141 ---GUUC-AA C-|GG-C|-C -GCGGU-(AU -UUUG)ACCG UG|C(AAA)- GG-UAGCGCA 7201 AUC-AC-U-U |GUCUCU(-U AAAU-)AGAG AC|CU-GUAU GAAUGGCUAG A-CGAGGGCU 7261 UA-------- ---------- -------ACU GUCUCCCCUA UCAA-GU-CA ----GUGAAA 7321 UU|G|AUCUA UC-CG(U-GC AGAAG)CGGG UAU----GAC UAUACAAGAC GAGAAG-ACC 7381 CUUUGG-|-A GCUUA--AGG UA|-ca-aau uua--c---- ---------- ---------- 7441 ---------- ---------- ---------- ---------- ---------- ---------- 7501 ---------- ---------- ---------- --<------- ------ccac guuaa-acaa 7561 cu-ccauaaa aaguaagaac uuaguggcag a--------- ---------- ---------- 7621 ---------- ---------- ---------- ---------- ---------- ---------- 7681 ---------- ---------- ---------- ---------- ---------- ---------- 7741 ---------- ---------- ---------- ---------- ---------- ---------- 7801 ---------- ---------- ---------- ---------- ---------- ---------- 7861 ---------- ---------- ---------- ---------- ---------- ---------- 7921 ---------- ---------- ---------- ---------- ---------- ---------- 7981 ---------- ---------- ---------- ---------- ---------- ---------- 8041 ---------- ---------- ---------- ---------- ---------- ---------- 8101 ---------- ---------- ----->---- ----u-aaaa uuu---U-AC CUUCGGUUG( 8161 GGG)CG-AC- C|GCGGAG(- --------GA AAAACAAGC- )CUCC-GA|G |u|gg---|< 8221 ---------- ---------- ---------- ---------- ---------- ---------- 8281 ---------- ---------- ---------- ---------- ---------- ------acug 8341 ggccaaac-- cccua----- ---------- ---------- ---------- ---------- 8401 ---------- ---------- ---------- ---------- ---------- ---------- 8461 ---------- ---------- ---------- ---------- ---------- ---------- 8521 ---------- ---------- ---------- ---------- ---------- ---------- 8581 ---------- ---------- ---------- ---------- ---------- ---------- 8641 ---------- ---------- ---------- ---------- ---------- ---------- 8701 ---------- ---------- ---------- ---------- --|------- ---------- 8761 --------aa gcuaa-uag( -agacau--- )uuaua-agc -cgcagaaua ucug------ 8821 ---------- ---------- ---------- ---------- ---------- --------ac 8881 c|---aaaaa UGAUC-cgac c--------- ---------- ---(------ ---------- 8941 ---------- ---------- ---------- ---------- -------aca gu)--|--ga 9001 ucgAUCAAC- |GAA-CCAAG UUACCC|UAG G|GAUAACAG |C-GCA-A-U CCCCUCCCAG 9061 AG(U--CCAU )AUCGACGAG --GGGGUUUA CG-ACCUCGA UGUU|GG--A U|C|AGGAC| 9121 AU-CC-UAAU GG-UG(--CA -GC)CGCUAU UAAG-GGU|U CGUU(UGUUC )AACGA-UUA 9181 A--AGUCCU- --ACGUGAUC UGAGUUCAGA CC|GG-A(GU AA)UCCAGGU CAGUUUCUAU 9241 CU|GUA---- --|-|<---- ---------- ---------- ---------- -----acgc- 9301 >--------- ---------- -uA-CUU-UU CC--(UAGU- AC(-GAAA)G GAUU-)GGAA 9361 A--AG-- ggggccc-au gc-------- 9421 -|-------- (-----) 9541 ---------- ---------- gcac-gcccc gcc------- ---------- -------cca 9601 ---------- ---aauugau (gaaaac--a aauaa)a-uu -aa-guaaag g--------- 9661 ---------- -------<-- ----gaggg- ---------- ---------- ---------- 9721 ---------- ---------- ---------- ---------- ---------- ---------- 9781 ---------- ---------- ---------- ---------- ---------- ---------- 9841 ---------- ---------- ---------- ---------- ---------- ---------- 9901 -------cca aaaccccugc c----->--| ------(--- )--------- -------|gu 9961 uc-(aagaua a--)-ggaca ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10021 ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~~~ 10141 ~~~~~~~~~~ ~~~~~~~~~~ ~)~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10201 ~~~~~~~~~~ ~|~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10321 ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ||||| // LOCUS mt.R.solit 10775 bp RNA RNA 02-JUN-1998 DEFINITION Mitochondrion Relictus solitarius.; . ACCESSION AF0384 6 KEYWORDS . SOURCE Mitochondrion Relictus solitarius. ORGANISM Mitochondrion Relictus solitarius. REFERENCE 1 (bases 1 to 2717) AUTHORS Simons,A.M. and Mayden,R.L. TITLE Phylogenetic Relationships of the Western North American Phoxinins (Actinopterygii: Cyprinidae) as Inferred from Mitochondrial 12S and 16S Ribosomal RNA Sequences JOURNAL Mol. Phylogenet. Evol. (1998) In press STANDARD No information REFERENCE 2 (bases 1 to 2717) AUTHORS Simons,A.M. and Mayden,R.L. TITLE Direct Submission JOURNAL Submitted (15-DEC-1997) Department of Biological Sciences, The University of Alabama, Box 870344, Tuscaloosa, AL 35487-0344, USA STANDARD No information COMMENTS Sequence information (bases 1 to 10775) Corresponding GenBank entry: AF038496 BASE COUNT 587 a 382 c 366 g 374 t 9066 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~ug caaauugggu ca-cccugaG C--------- ----caaaca 301 |gcu--agc| uu-------- -|-------- ---------- ---------| -----(---- 361 ---------) -|-------- -------|-- -------(-- ---------- ---------- 421 -------)-- ---------- ---------- ---------- ---------- -----(---- 481 )---|----- --(-----)- ---------- ---------- ---------- -(------)- 541 ---------- ---------- ---- ---------- |------aac 841 uAA(ACCA)U Uuu------- ---------- ---------- ---------- --------uu 901 ------(--- --)------- |uac-cuaA- -GUAC-G(-G GAGA)CGGAA -aaggu---- 961 -------<-- --ucacccu- ---------- ---------- ---------- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- --->------ 1201 ---------- ---------- ---------- ---------< ---------- ---------- 1261 ---------- ---------- ---------> (------)-- ---------- ---|-(---) 1321 -------(-- -----)---- ---------- ---------- ---------- --<------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- >--------- ------(--- ---------- 1561 -------)-- ---------- ---------- -(-------) ---------- ---------- 1621 ---------- --AAAGCAAU AGAA-AA--- ---AGUACC( -GCAA-)GG- ---AAA-GC- 1681 ugaaagagaa augaaacaac ccaua----- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- -----uaa-G C-AGAA ACAAAG---- --------<- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------> (--acuaaac 2041 --)------- -----CUU-G UACCUU(UU- GCAUC)AUGA |UUU-AGCCA GCacc--cu- 2101 caagcaaag- ---------- -------(-- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- -)-------- ---------- 2521 ----(----- )-----<--- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- agac->---- --(------) ---------- ---------- -cuuuaguuu 2701 gga-acCCCG AA-ACCAG-G UG-AGCUACC CCG-AGA-CA GCCU------ ---------- 2761 -(-------- ---------- ---------- --------au auua-uuua) ---------- 2821 -GGGCUAA-C CC-GUCUCU( GUGGCAA-A) AGAG-UGGGA --AGAGCUC- CGGGUAG-AA 2881 GU(G-ACAG) ACC-UACC-G A-ACCUGGUG AUAGCU-GGU UGUCU--GAG AA-GUG-GAU 2941 (-AGAA)GUU CA-GC-CUCA UACC<----- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ------->-- ---|------ 3061 -|------|- ---------- ---------- --------(- --------)< ccccaaguca 3121 a-ca-----u auauuauuaa gauguuc--- ---------- ---------- ---------- 3181 ----agggaa au-------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---->----- ---------- 3301 ---------- ---------- ----|----- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ------au-a -uGAG-AGUU AGUUG--AA- AG-GG(-GUA 3481 CAG)CCCUUU UA-AC----- -aAAGG(AUA -CAA)CCU-u uacag-g-ag -ga-UAA--- 3541 --agaucaua auauaua-a- aacaua---- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ------cugu u<-------- ---------- ---------- 3721 ---------- ---------- ---------- ---------- -->UUAGU-G GGC(CUAAAA 3781 GC-A)-GCCA -CCUA|G(A- UA)-|GAAAG C(--GUUAAA )GC|-uCag- gcag--<--- 3841 --aaggaagu uuauuauacc gauaagaaaa ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- ---------- 4021 ---------- ---------- ---------- ---------- ---------- ---------- 4081 -------|uc uuau--ucc| c--c-ua|-- ---------- ---------- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- ---------- ---------- ---------- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- -----auuau auCAG-AU|- CA-ACCCAUG ---------- 4501 ---------- ---------- (cccc----- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ------->-- ---------- ---------| CAUGGAAGAG AUUAUGC-UA 4681 GA|AUGAGUA -ACAA-GAA- ga-------- (-cuugcacu ---------- ---------- 4741 ---------- -----)---- ---uc-|ucc ----uu-GCA CAA--gugua a|----acca 4801 gauc----gg ---------- ----(--aca ag)c-c|--a cuggaa---- ---------- 4861 ---cuuaa-- -cga------ ---------- -------(-- ---------- ------)<-- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 >--------- ---------- ---------- ----(----- ---------- ---------- 5041 ---------- ---------- ----)----- |-----|--- ---------- |--<------ 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ---------- ---------- 5221 ---------- ---------- ---------- ---------- ---------- ---------- 5281 ---------- ---------- ---------- ---------- ---------- ---------- 5341 ---------- ---------- ---------- ---------- ---------- ---------- 5401 ---------- ---------- ------->-- ---------- ---------- ---------- 5461 -----(---- ------)--- ---|------ --------|- ---------- -(-----)-- 5521 |--------- ---------- ---------- -----(---- )--------- ---------- 5581 --<------- ---------- ---------- ---------- ---------- ---------- 5641 ---------- ---------- ------->-- ---------- ---------- ---<------ 5701 ---------- acccaaccca agagggcaau gugagcaaca aagauaucaa gaagaauuca 5761 caauaaacua a--------- ---------- ---------- ---------- ---------- 5821 ---------- ---------- ---------- ---------- ---------- ---------- 5881 ---------- ---------- ---------- ---------- ---------- ---------- 5941 ---------- ---------- ---------- ---------- ---------- ---------- 6001 ---------- ---------- ---------- ---------- ---------- ---------- 6061 ---------- ---------- ---------- ---------- ---------- ---------- 6121 ---------- ---------- ---------- ---------- ---------- ---------- 6181 ---------- ---------- ---------- ---------- ---------- ---------- 6241 ---------- ---------- ---------- ---------- ---------- ---------- 6301 ---------- ---------- ---------- ---------- ---------- ---------- 6361 ---------- ---------- ---------- ---------- ---------- ---------- 6421 ---------- ---------- ------>--- ---------- ---------- --ucgu-|-- 6481 ---UAACCC- -(CACACU)G G|AGUGC--- ----(uauau uauaaa)--- -----ggaa| 6541 |---AGAC-U A--AAAGGUG -GGAA-AGGA ACUCGGCAAA ---------- ---------- 6601 ---------- ---------- ---------- ---------- ---------- ---------- 6661 ---------- ---------- ---------- ---------- ---------- ---------- 6721 ---------- ---------- ---------- ---------- ---------- ---------- 6781 ------(--- )--------c acAAGCCU|C GC---CUG-U UU(ACCAA)A AA-CAUC-GC 6841 CUCCUG|C-- ---------- ---------- (aacuacuuu ga----)--- ---------- 6901 ------GUA- UAG-GAGGUC CAGCCU<--- ---------- ---------- ---------- 6961 ---------- ---------- -------->G CC-CA-GU|G AC-------- ---------- 7021 ---------- --(------- ---------- ---------- ---------- ---------- 7081 ---------- ---------- --------ua cgg)------ ---------- ---------| 7141 ---GUUC-AA C-|GG-C|-C -GCGGU-(AU -UUUG)ACCG UG|C(AAA)- GG-UAGCGCA 7201 AUC-AC-U-U |GUCUCU(-U AAAU-)AGAG AC|CU-GUAU GAAUGGCUAG A-CGAGGGCU 7261 UA-------- ---------- -------ACU GUCUCCCCUA CCAA-GU-CA ----GUGAAA 7321 UU|G|AUCUA UC-CG(U-GC AGAAG)CGGG UAU----GAC CAUACAAGAC GAGAAG-ACC 7381 CUUUGG-|-A GCUUA--AGG UA|-caaugu uua--c---- ---------- ---------- 7441 ---------- ---------- ---------- ---------- ---------- ---------- 7501 ---------- ---------- ---------- --<------- ------ccac guuaa-acaa 7561 cu-ucauaaa aagcaagaac uuaguggcag a--------- ---------- ---------- 7621 ---------- ---------- ---------- ---------- ---------- ---------- 7681 ---------- ---------- ---------- ---------- ---------- ---------- 7741 ---------- ---------- ---------- ---------- ---------- ---------- 7801 ---------- ---------- ---------- ---------- ---------- ---------- 7861 ---------- ---------- ---------- ---------- ---------- ---------- 7921 ---------- ---------- ---------- ---------- ---------- ---------- 7981 ---------- ---------- ---------- ---------- ---------- ---------- 8041 ---------- ---------- ---------- ---------- ---------- ---------- 8101 ---------- ---------- ----->---- ----u-aaga cuu---U-AC CUUCGGUUG( 8161 GGG)CG-AC- C|ACGGAG(- --------GA GAAACGAGC- )CUCC-GA|G |u|gg---|< 8221 ---------- ---------- ---------- ---------- ---------- ---------- 8281 ---------- ---------- ---------- ---------- ---------- ------acug 8341 gggcaaac-- cccua----- ---------- ---------- ---------- ---------- 8401 ---------- ---------- ---------- ---------- ---------- ---------- 8461 ---------- ---------- ---------- ---------- ---------- ---------- 8521 ---------- ---------- ---------- ---------- ---------- ---------- 8581 ---------- ---------- ---------- ---------- ---------- ---------- 8641 ---------- ---------- ---------- ---------- ---------- ---------- 8701 ---------- ---------- ---------- ---------- --|------- ---------- 8761 --------aa gcuag-uag( -aaacau--- )cuaua-agc -cgcagaaua ucug------ 8821 ---------- ---------- ---------- ---------- ---------- --------ac 8881 c|---aaaga UGAUC-cgac c--------- ---------- ---(------ ---------- 8941 ---------- ---------- ---------- ---------- -------uua gc)--|--ag 9001 ucgAUCAAC- |GGA-CCAAG UUACCC|UAG G|GAUAACAG |C-GCA-A-U CCCCUCCCAG 9061 AG(U--CCAU )AUCGACGAG --GGGGUUUA CG-ACCUCGA UGUU|GG--A U|C|AGGAC| 9121 AU-CC-UAAU GG-UG(--CA -GC)CGCUAU UAAG-GGU|U CGUU(UGUUC )AACGA-UUA 9181 A--AGUCCU- --ACGUGAUC UGAGUUCAGA CC|GG-A(GU AA)UCCAGGU CAGUUUCUAU 9241 CU|GUA---- --|-|<---- ---------- ---------- ---------- -----acgc- 9301 >--------- ---------- -uA-CUU-UU CC--(UAGU- AC(-GAAA)G GAUu-)GGAA 9361 A--AG-- ggggccc-au gc-------- 9421 -|-------- (-----) 9541 ---------- ---------- gcac-gcccc gcc------- ---------- -------cca 9601 ---------- ---aauuaau (gaaaac--a aacaa)a-uu -aa-guaaag g--------- 9661 ---------- -------<-- ----gaggg- ---------- ---------- ---------- 9721 ---------- ---------- ---------- ---------- ---------- ---------- 9781 ---------- ---------- ---------- ---------- ---------- ---------- 9841 ---------- ---------- ---------- ---------- ---------- ---------- 9901 -------cua aaaccccuac c----->--| ------(--- )--------- -------|gc 9961 uc-(aagaua a--)-gggaa ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10021 ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~~~ 10141 ~~~~~~~~~~ ~~~~~~~~~~ ~)~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10201 ~~~~~~~~~~ ~|~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10321 ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ||||| // LOCUS mt.S.bicol 10775 bp RNA RNA 02-JUN-1998 DEFINITION Mitochondrion Siphateles bicolor.; . ACCESSION AF0384 7 KEYWORDS . SOURCE Mitochondrion Siphateles bicolor. ORGANISM Mitochondrion Siphateles bicolor. REFERENCE 1 (bases 1 to 2712) AUTHORS Simons,A.M. and Mayden,R.L. TITLE Phylogenetic Relationships of the Western North American Phoxinins (Actinopterygii: Cyprinidae) as Inferred from Mitochondrial 12S and 16S Ribosomal RNA Sequences JOURNAL Mol. Phylogenet. Evol. (1998) In press STANDARD No information REFERENCE 2 (bases 1 to 2712) AUTHORS Simons,A.M. and Mayden,R.L. TITLE Direct Submission JOURNAL Submitted (15-DEC-1997) Department of Biological Sciences, The University of Alabama, Box 870344, Tuscaloosa, AL 35487-0344, USA STANDARD No information COMMENTS Sequence information (bases 1 to 10775) Corresponding GenBank entry: AF038497 BASE COUNT 588 a 376 c 363 g 376 t 9072 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~ug caaauuggau ca-cccugaG C--------- ----caaaca 301 |gcu--agc| cu-------- -|-------- ---------- ---------| -----(---- 361 ---------) -|-------- -------|-- -------(-- ---------- ---------- 421 -------)-- ---------- ---------- ---------- ---------- -----(---- 481 )---|----- --(-----)- ---------- ---------- ---------- -(------)- 541 ---------- ---------- ---- ---------- |------aac 841 uAA(ACCA)U UuU------- ---------- ---------- ---------- --------uu 901 ------(--- --)------- |uac-cugA- -GUAC-G(-G GAGA)CGGAA -aaggu---- 961 -------<-- --ucaaccu- ---------- ---------- ---------- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- --->------ 1201 ---------- ---------- ---------- ---------< ---------- ---------- 1261 ---------- ---------- ---------> (------)-- ---------- ---|-(---) 1321 -------(-- -----)---- ---------- ---------- ---------- --<------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- >--------- ------(--- ---------- 1561 -------)-- ---------- ---------- -(-------) ---------- ---------- 1621 ---------- --AGAGCAAU AGAG-AA--- ---AGUACC( -GCAA-)GG- ---AAA-GC- 1681 ugaaagagaa gugaaacaac ccaua----- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- -----uaa-G C-AGAA ACAAAG---- --------<- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------> (--acuaaac 2041 --)------- -----CUU-G UACCUU(UU- GCAUC)AUGA |UUU-AGCCA GCacc--cu- 2101 caagcaaag- ---------- -------(-- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- -)-------- ---------- 2521 ----(----- )-----<--- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- agac->---- --(------) ---------- ---------- -cuuuaguuu 2701 gaa-acCCCG AA-ACCAG-G UG-AGCUACC CCG-AGA-CA GCCU------ ---------- 2761 -(-------- ---------- ---------- --------au auua-uuua) ---------- 2821 -GGGCUAA-C CC-GUCUCU( GUGGCAA-A) AGAG-UGGGA --AGAGCUC- CGGGUAG-AA 2881 GU(G-ACAG) ACC-UACC-G A-ACCUGGUG AUAGCU-GGU UGUCU--GAG AA-GUG-GAU 2941 (-AGAA)GUU CA-GC-CUCA UUCA<----- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ------->-- ---|------ 3061 -|------|- ---------- ---------- --------(- --------)< ccccaaauca 3121 a-ga-----u u-auuaa--g auacuau--- ---------- ---------- ---------- 3181 ----gg-gaa au-------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---->----- ---------- 3301 ---------- ---------- ----|----- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ------aU-A -UGAG-AGUU AGUUG--AA- AG-GG(-GUA 3481 CAG)CCCUUU UA-AC----- -aAAGG(AUA -CAA)CCUuu uacag-g-ag -ga-UAA--- 3541 --agaucaua auauaua-a- aacaua---- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ------cugu u<-------- ---------- ---------- 3721 ---------- ---------- ---------- ---------- -->UUAGU-G GGC(CUAAAA 3781 GC-A)-GCCA -uCUA|A(A- UA)-|GAAAG C(--GUUAAA )GC|-uCag- acag--<--- 3841 --aaagaagu uuauuauacc gauaaaaaa- ---------- ---------- ---------- 3901 ---------- -------|-- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- ---------- 4021 ---------- ---------- ---------- ---------- ---------- ---------- 4081 -------|uc uuau--ucc| c--c-ua|-- ---------- ---------- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- ---------- ---------- ---------- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- -----auuau auCAG-AU|- CA-ACCCAUG ---------- 4501 ---------- ---------- (ccca---)< ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ------->-- ---------- ---------| CAUGGAAGAG AUUAUGC-UA 4681 GA|AUGAGUA -ACAA-GAA- gu-------- (-cccgcgcu ---------- ---------- 4741 ---------- -----)---- ---uc-|ucc ----uu-GCA CAA--gugua a|----acca 4801 gauc----gg ---------- ----(--aca ag)c-c|--g cuggaa---- ---------- 4861 ---cuuag-- -cga------ ---------- -------(-- ---------- ------)<-- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 >--------- ---------- ---------- ----(----- ---------- ---------- 5041 ---------- ---------- ----)----- |-----|--- ---------- |--<------ 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ---------- ---------- 5221 ---------- ---------- ---------- ---------- ---------- ---------- 5281 ---------- ---------- ---------- ---------- ---------- ---------- 5341 ---------- ---------- ---------- ---------- ---------- ---------- 5401 ---------- ---------- ------->-- ---------- ---------- ---------- 5461 -----(---- ------)--- ---|------ --------|- ---------- -(-----)-- 5521 |--------- ---------- ---------- -----(---- )--------- ---------- 5581 --<------- ---------- ---------- ---------- ---------- ---------- 5641 ---------- ---------- ------->-- ---------- ---------- ---<------ 5701 ---------- acccaaccca agagggcaau gug-aacaac aaaaaucuca agaaaaauuc 5761 acaauuaaac a--------- ---------- ---------- ---------- ---------- 5821 ---------- ---------- ---------- ---------- ---------- ---------- 5881 ---------- ---------- ---------- ---------- ---------- ---------- 5941 ---------- ---------- ---------- ---------- ---------- ---------- 6001 ---------- ---------- ---------- ---------- ---------- ---------- 6061 ---------- ---------- ---------- ---------- ---------- ---------- 6121 ---------- ---------- ---------- ---------- ---------- ---------- 6181 ---------- ---------- ---------- ---------- ---------- ---------- 6241 ---------- ---------- ---------- ---------- ---------- ---------- 6301 ---------- ---------- ---------- ---------- ---------- ---------- 6361 ---------- ---------- ---------- ---------- ---------- ---------- 6421 ---------- ---------- ------>--- ---------- ---------- --ucgu-|-- 6481 ---UAAUCC- -(CACACU)G G|AGUGC--- ----(uauuu uauaaa)--- -----ggaa| 6541 |---AGAC-U A--AAGGAUA -GGAA-AGGA ACUCGGCAAA ---------- ---------- 6601 ---------- ---------- ---------- ---------- ---------- ---------- 6661 ---------- ---------- ---------- ---------- ---------- ---------- 6721 ---------- ---------- ---------- ---------- ---------- ---------- 6781 ------(--- )--------c acAAGCCU|C GC---CUG-U UU(ACCAA)A AA-CAUC-GC 6841 CUUCUG|C-- ---------- ---------- (aacuaaauu ga----)--- ---------- 6901 ------GUA- UAG-GAGGUC CAGCCU<--- ---------- ---------- ---------- 6961 ---------- ---------- -------->G CC-CA-GU|G AC-------- ---------- 7021 ---------- --(------- ---------- ---------- ---------- ---------- 7081 ---------- ---------- --------ua cgg)------ ---------- ---------| 7141 ---GUUC-AA C-|GG-C|-C -GCGGU-(AU -UUUG)ACCG UG|C(AAA)- GG-UAGCGCA 7201 AUC-AC-U-U |GUCUCU(-U AAAU-)AGAG AC|CU-GUAU GAAUGGCUAG A-CGAGGGCU 7261 UA-------- ---------- -------ACU GUCUCCCCUA UCAA-GU-CA ----GUGAAA 7321 UU|G|AUCUA UC-CG(U-GC AGAAG)CGGG UAU----GAC UCUACAAGAC GAGAAG-ACC 7381 CUUUGG-|-A GCUUA--AGG UA|-ca-aau uua--u---- ---------- ---------- 7441 ---------- ---------- ---------- ---------- ---------- ---------- 7501 ---------- ---------- ---------- --<------- ------ccac gucaa-acaa 7561 cu-ccauaaa aaguaagaac uuaguggcaa a--------- ---------- ---------- 7621 ---------- ---------- ---------- ---------- ---------- ---------- 7681 ---------- ---------- ---------- ---------- ---------- ---------- 7741 ---------- ---------- ---------- ---------- ---------- ---------- 7801 ---------- ---------- ---------- ---------- ---------- ---------- 7861 ---------- ---------- ---------- ---------- ---------- ---------- 7921 ---------- ---------- ---------- ---------- ---------- ---------- 7981 ---------- ---------- ---------- ---------- ---------- ---------- 8041 ---------- ---------- ---------- ---------- ---------- ---------- 8101 ---------- ---------- ----->---- ----u-gaaa uuu---U-AC CUUCGGUUG( 8161 GGG)CG-AC- C|GGGGAG(- --------GA AAAACGAGC- )CUCC-GA|G |u|gg---|< 8221 ---------- ---------- ---------- ---------- ---------- ---------- 8281 ---------- ---------- ---------- ---------- ---------- ------acug 8341 ggccaaac-- cccua----- ---------- ---------- ---------- ---------- 8401 ---------- ---------- ---------- ---------- ---------- ---------- 8461 ---------- ---------- ---------- ---------- ---------- ---------- 8521 ---------- ---------- ---------- ---------- ---------- ---------- 8581 ---------- ---------- ---------- ---------- ---------- ---------- 8641 ---------- ---------- ---------- ---------- ---------- ---------- 8701 ---------- ---------- ---------- ---------- --|------- ---------- 8761 --------aa gcuaa-uag( -aaacau--- )cuaua-agc -cgcagaaua ucug------ 8821 ---------- ---------- ---------- ---------- ---------- --------ac 8881 c|---aaaaa UGAUU-cgac c--------- ---------- ---(------ ---------- 8941 ---------- ---------- ---------- ---------- -------aca gg)--|--gg 9001 ucgAUCAAC- |GAA-CCAAG UUACCC|UAG G|GAUAACAG |C-GCA-A-U CCCCUCCCAG 9061 AG(U--CCAU )AUCGACGAG --GGGGUUUA CG-ACCUCGA UGUU|GG--A U|C|AGGAC| 9121 AU-CC-UAAU GG-UG(--CA -GC)CGCUAU UAAG-GGU|U CGUU(UGUUC )AACGA-UUA 9181 A--AGUCCU- --ACGUGAUC UGAGUUCAGA CC|GG-A(GU AA)UCCAGGU CAGUUUCUAU 9241 CU|GUA---- --|-|<---- ---------- ---------- ---------- -----acgc- 9301 >--------- ---------- -uA-CUU-UU CC--(UAGU- AC(-GAAA)G GAUu-)GGAA 9361 A--AG-- ggggccc-au gc-------- 9421 -|-------- (-----) 9541 ---------- ---------- gcac-gcccc gcc------- ---------- -------cca 9601 ---------- ---aauuaau (gaaaac--a aauaa)a-uu -aa-guaaag g--------- 9661 ---------- -------<-- ----gaggg- ---------- ---------- ---------- 9721 ---------- ---------- ---------- ---------- ---------- ---------- 9781 ---------- ---------- ---------- ---------- ---------- ---------- 9841 ---------- ---------- ---------- ---------- ---------- ---------- 9901 -------cca aaaccccugc c----->--| ------(--- )--------- -------|gu 9961 uc-(aagaua a--)-ggaca ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10021 ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~~~ 10141 ~~~~~~~~~~ ~~~~~~~~~~ ~)~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10201 ~~~~~~~~~~ ~|~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10321 ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ||||| // LOCUS (20)-Homal 10775 bp RNA RNA 09-JAN-1999 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 10775) Corresponding GenBank entry: DIVIDER BASE COUNT 0 a 0 c 0 g 0 t 10775 others ORIGIN 1 |......... .......... .......... .......... .......... .......... 61 .......... .......... .......... .......... .......... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......... .......... .......... .......... 241 .......... .......... .......... .......... .......... .......... 301 .......... .......... .......... .......... .......... .......... 361 .......... .......... .......... .......... .......... .......... 421 .......... .......... .......... .......... .......... .......... 481 .......... .......... .......... .......... .......... .......... 541 .......... .......... .......... .......... .......... .......... 601 .......... .......... .......... .......... .......... .......... 661 .......... .......... .......... .......... .......... .......... 721 .......... .......... .......... .......... .......... .......... 781 .......... .......... .......... .......... .......... .......... 841 .......... .......... .......... .......... .......... .......... 901 .......... .......... .......... .......... .......... .......... 961 .......... .......... .......... .......... .......... .......... 1021 .......... .......... .......... .......... .......... .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .......... .......... .......... .......... .......... 1201 .......... .......... .......... .......... .......... .......... 1261 .......... .......... .......... .......... .......... .......... 1321 .......... .......... .......... .......... .......... .......... 1381 .......... .......... .......... .......... .......... .......... 1441 .......... .......... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... .......... .......... .......... .......... .......... 1621 .......... .......... .......... .......... .......... .......... 1681 .......... .......... .......... .......... .......... .......... 1741 .......... .......... .......... .......... .......... .......... 1801 .......... .......... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .......... .......... 1921 .......... .......... .......... .......... .......... .......... 1981 .......... .......... .......... .......... .......... .......... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... .......... .......... .......... .......... .......... 2161 .......... .......... .......... .......... .......... .......... 2221 .......... .......... .......... .......... .......... .......... 2281 .......... .......... .......... .......... .......... .......... 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... .......... 2701 .......... .......... .......... .......... .......... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... .......... 2881 .......... .......... .......... .......... .......... .......... 2941 .......... .......... .......... .......... .......... .......... 3001 .......... .......... .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .......... .......... 3181 .......... .......... .......... .......... .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .......... .......... .......... 3361 .......... .......... .......... .......... .......... .......... 3421 .......... .......... .......... .......... .......... .......... 3481 .......... .......... .......... .......... .......... .......... 3541 .......... .......... .......... .......... .......... .......... 3601 .......... .......... .......... .......... .......... .......... 3661 .......... .......... .......... .......... .......... .......... 3721 .......... .......... .......... .......... .......... .......... 3781 .....-.... .......... .......... .......... .......... .......... 3841 .......... .......... .......... .......... .......... .......... 3901 .......... .......... .......... .......... .......... .......... 3961 .......... .......... .......... .......... .......... .......... 4021 .......... .......... .......... .......... .......... .......... 4081 .......... .......... .......... .......... .......... .......... 4141 .......... .......... .......... .......... .......... .......... 4201 .......... .......... .......... .......... .......... .......... 4261 .......... .......... .......... .......... .......... .......... 4321 .......... .......... .......... .......... .......... .......... 4381 .......... .......... .......... .......... .......... .......... 4441 .......... .......... .......... .......... .......... .......... 4501 .......... .......... .......... .......... .......... .......... 4561 .......... .......... .......... .......... .......... .......... 4621 .......... .......... .......... .......... .......... .......... 4681 .......... .......... .......... .......... .......... .......... 4741 .......... .......... .......... .......... .......... .......... 4801 .......... .......... .......... ..)....... .......... .......... 4861 .......... .......... .......... .......... .......... .......... 4921 .......... .......... .......... .......... .......... .......... 4981 .......... .......... .......... .......... .......... .......... 5041 .......... .......... .......... .......... .......... .......... 5101 .......... .......... .......... .......... .......... .......... 5161 .......... .......... .......... .......... .......... .......... 5221 .......... .......... .......... .......... .......... .......... 5281 .......... .......... .......... .......... .......... .......... 5341 .......... .......... .......... .......... .......... .......... 5401 .......... .......... .......... .......... .......... .......... 5461 .......... .......... .......... .......... .......... .......... 5521 .......... .......... .......... .......... .......... .......... 5581 .......... .......... .......... .......... .......... .......... 5641 .......... .......... .......... .......... .......... .......... 5701 .......... .......... .......... .......... .......... .......... 5761 .......... .......... .......... .......... .......... .......... 5821 .......... .......... .......... .......... .......... .......... 5881 .......... .......... .......... .......... .......... .......... 5941 .......... .......... .......... .......... .......... .......... 6001 .......... .......... .......... .......... .......... .......... 6061 .......... .......... .......... .......... .......... .......... 6121 .......... .......... .......... .......... .......... .......... 6181 .......... .......... .......... .......... .......... .......... 6241 .......... .......... .......... .......... .......... .......... 6301 .......... .......... .......... .......... .......... .......... 6361 .......... .......... .......... .......... .......... .......... 6421 .......... .......... .......... .......... .......... .......... 6481 .......... .......... .......... .......... .......... .......... 6541 .......... .......... .......... .......... .......... .......... 6601 .......... .......... .......... .......... .......... .......... 6661 .......... .......... .......... .......... .......... .......... 6721 .......... .......... .......... .......... .......... .......... 6781 .......... .......... .......... .......... .......... .......... 6841 .......... .......... .......... .......... .......... .......... 6901 .......... .......... .......... .......... .......... .......... 6961 .......... .......... .......... .......... .......... .......... 7021 .......... .......... .......... .......... .......... .......... 7081 .......... .......... .......... .......... .......... .......... 7141 .......... .......... .......... .......... .......... .......... 7201 .......... .......... .......... .......... .......... .......... 7261 .......... .......... .......... .......... .......... .......... 7321 .......... .......... .......... .......... .......... .......... 7381 .......... .......... .......... .......... .......... .......... 7441 .......... .......... .......... .......... .......... .......... 7501 .......... .......... .......... .......... .......... .......... 7561 .......... .......... .......... .......... .......... .......... 7621 .......... .......... .......... .......... .......... .......... 7681 .......... .......... .......... .......... .......... .......... 7741 .......... .......... .......... .......... .......... .......... 7801 .......... .......... .......... .......... .......... .......... 7861 .......... .......... .......... .......... .......... .......... 7921 .......... .......... .......... .......... .......... .......... 7981 .......... .......... .......... .......... .......... .......... 8041 .......... .......... .......... .......... .......... .......... 8101 .......... .......... .......... .......... .......... .......... 8161 .......... .......... .......... .......... .......... .......... 8221 .......... .......... .......... .......... .......... .......... 8281 .......... .......... .......... .......... .......... .......... 8341 .......... .......... .......... .......... .......... .......... 8401 .......... .......... .......... .......... .......... .......... 8461 .......... .......... .......... .......... .......... .......... 8521 .......... .......... .......... .......... .......... .......... 8581 .......... .......... .......... .......... .......... .......... 8641 .......... .......... .......... .......... .......... .......... 8701 .......... .......... .......... .......... .......... .......... 8761 .......... .......... .......... .......... .......... .......... 8821 .......... .......... .......... .......... .......... .......... 8881 .......... .......... .......... .......... .......... .......... 8941 .......... .......... .......... .......... .......... .......... 9001 .......... .......... .......... .......... .......... .......... 9061 .......... .......... .......... .......... .......... .......... 9121 .......... .......... .......... .......... .......... .......... 9181 .......... .......... .......... .......... .......... .......... 9241 .......... .......... .......... .......... .......... .......... 9301 .......... .......... .......... .......... .......... .......... 9361 .......... .......... .......... .......... .......... .......... 9421 .......... .......... .......... .......... .......... .......... 9481 .......... .......... .......... .......... .......... .......... 9541 .......... .......... .......... .......... .......... .......... 9601 .......... .......... .......... .......... .......... .......... 9661 .......... .......... .......... .......... .......... .......... 9721 .......... .......... .......... .......... .......... .......... 9781 .......... .......... .......... .......... .......... .......... 9841 .......... .......... .......... .......... .......... .......... 9901 .......... .......... .......... .......... .......... .......... 9961 .......... .......... .......... .......... .......... .......... 10021 .......... .......... .......... .......... .......... .......... 10081 .......... .......... .......... .......... .......... .......... 10141 .......... .......... .......... .......... .......... .......... 10201 .......... .......... .......... .......... .......... .......... 10261 .......... .......... .......... .......... .......... .......... 10321 .......... .......... .......... .......... .......... .......... 10381 .......... .......... .......... .......... .......... .......... 10441 .......... .......... .......... .......... .......... .......... 10501 .......... .......... .......... .......... .......... .......... 10561 .......... .......... .......... .......... .......... .......... 10621 .......... .......... .......... .......... .......... .......... 10681 .......... .......... .......... .......... .......... .......... 10741 .......... .......... .......... ||||| // LOCUS mt.C.lacus 10775 bp RNA RNA 11-JAN-191 DEFINITION mitochondrion Crossostoma lacustre. ACCESSION No information KEYWORDS No information. SOURCE mitochondrion Crossostoma lacustre. ORGANISM mitochondrion Crossostoma lacustre. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 10775) Corresponding GenBank entry: M91245 LOCUS CRQMTGENOM 16558 bp ds-DNA ORG 05-OCT-1992 DEFINITION Crossostoma lacustre mitochondrion, complete genome. ACCESSION M91245 KEYWORDS 12S rRNA; 16S rRNA; ATPase 6; ATPase 8; D-loop; NADH dehydrogenase; cytochrome b; cytochrome c oxidase; mitochondrial genome; tRNA. SOURCE Mitochondrion Crossostoma lacustre (chromosome Mitochondrion Crossostoma lacustre) female DNA. ORGANISM Mitochondrion Crossostoma lacustre Eukaryota; Animalia; Chordata; Vertebrata; Osteichthyes; Actinopterygii; Cypriniformes; Cyprioidei; Homalopteridae. REFERENCE 1 (bases 1 to 16558) AUTHORS Tzeng,C.-S., Shen,S.-C. and Huang,P.-C. TITLE Mitochondrial DNA identity of Crossostoma (Homalopteridae, Pisces) from two river systems of the same geographical origin JOURNAL Bull. Inst. Zool. Acad. Sin. 29, 11-19 (1990) STANDARD full automatic REFERENCE 2 (bases 1 to 16558) AUTHORS Tzeng,C.-S., Hui,C.-F., Shen,S.-C. and Huang,P.-C. TITLE The complete nucleotide sequence of the Crossostoma lacustre mitochondrial genome: Conservation and variations among vertebrates JOURNAL Nucleic Acids Res. 20, 4853-4858 (1992) STANDARD full automatic FEATURES Location/Qualifiers D-loop 1..896 tRNA 898..967 /note="anticodon unspecified" rRNA 968..1918 /product="12S ribosomal RNA" /note="putative" tRNA 1919..1990 /note="anticodon location unspecified; amino acid = Val" rRNA 1991..3670 /product="16S ribosomal RNA" tRNA 3671..3744 /note="anticodon location unspecified; amino acid = Leu (UUC)" /note="putative" tRNA 4728..4801 /note="anticodon location unspecified; amino acid = Ile" /note="putative" tRNA complement(4799..4869) /note="anticodon location unspecified; amino acid = Gln" /note="putative" tRNA 4871..4939 /note="anticodon location unspecified; amino acid = Met" /note="putative" tRNA 5985..6055 /note="anticodon location unspecified; amino acid = Trp" /note="putative" tRNA complement(6058..6126) /note="anticodon location unspecified; amino acid = Ala" /note="putative" tRNA complement(6128..6200) /note="anticodon location unspecified; amino acid = Asn" /note="putative" tRNA complement(6231..6298) /note="anticodon location unspecified; amino acid = Cys" /note="putative" tRNA complement(6298..6365) /note="anticodon location unspecified; amino acid = Tyr" /note="putative" tRNA complement(7920..7988) /note="anticodon location unspecified; amino acid = Ser" /note="putative" tRNA 7992..8064 /note="anticodon location unspecified; amino acid = Asp" /note="putative" tRNA 8769..8844 /note="anticodon location unspecified; amino acid = Lys" /note="putative" tRNA 10472..10543 /note="anticodon location unspecified; amino acid = Gly" /note="putative" tRNA 10893..10962 /note="anticodon location unspecified; amino acid = Arg" /note="putative" tRNA 12634..12704 /note="anticodon location unspecified; amino acid = His" /note="putative" tRNA 12704..12773 /note="anticodon location unspecified; amino acid = Ser" /note="putative" tRNA 12774..12846 /note="anticodon location unspecified; amino acid = Leu" /note="putative" tRNA complement(15205..15271) /note="anticodon location unspecified; amino acid = Glu" /note="putative" tRNA 16419..16490 /note="anticodon location unspecified; amino acid = Thr" /note="putative" tRNA complement(16489..16558) /note="anticodon location unspecified; amino acid = Pro" /note="putative" CDS 3746..4720 /note="putative" /product="NADH dehydrogenase subunit 1" /codon_start=1 /translation="MLNTLLTHLINPLAYIVPVLLAVAFLTLLERKVLGYMQLRKGPN IVGPYGLLQPIADGVKLFIKEPIRPSTASPTLFLVTPMLALTLAMTLWAPMPMPHPII DLNLGVLFILALSSLAVYSILGSGWASNSKYALIGALRAVAQTISYEVSLGLILRSII IFWGGYTVQTFNTTQEALWLLLPACPLAAMWYISTLAETNRAPFDLTEGESELAPGFN VEYAGGPFALLFLAEYANILLMNTLSAILFLGASHMPAIPELTTINLMTKAALLSVVF LWVRASYPRFRYDQLMHLVWKNFLPLTLALVLWHTALPIAFAGLPPQL" CDS 4940..5986 /note="putative" /product="NADH dehydrogenase subunit 2" /codon_start=1 /translation="MNPYVLMILISSLGLGTTLTFASSHWLLAWMGLEINTLAILRLM AQQHHPRAVEATTKYFLTQATAAAMILFAATTNAWATGEWDINNLTHPLASSLTMMAL ALKVGLAPMHFWMPEVLQGLDLTMGLILSTWQKLAPFALITQMAPNTNPMLLTTLGLL STLIGGWGGLNQTQLRKILAYSSIAHMGWMIIILQYTPQLTLIALGLYIFMTSAAFLS LKMASATKMNTLTAAWSKSPVLVSTTALTLLSLGGLPPLTGFMPKWLILQELTKQDLP ATATIMALAALLSLYFYLRLSYAMALTIYPNTTNALTPWRTNTTQSTLALALMMIGAL GLLPLTPTIMALFF" CDS 6367..7917 /note="putative" /product="cytochrome c oxidase subunit I" /codon_start=1 /translation="MAITRWFFSTNHKDIGTLYLVFGAWAGMVGTALSLLIRAELNQP GALLGDDQIYNVIVTAHAFVMIFFMVMPILIGGFGNWLVPLMIGAPHMAFPRMNNMSF WLLPPSFLLLLASSGVEAGAGTGWTVYPPLAGNLAHAGASVDLTIFSLHLAGVSSILG AINFITTTINMKPPALSQYQTPLFVWAVLITAVLLLLSLPVLAAGITMLLTDRNLNTT FFDPAGGGDPILYQHLFWFFGHPEVYILILPGFGIISHVVAYYAGKKEPFGYMGMVWA MMAIGLLGFIVWAHHMFTVGMDVDTRAYFTSATMIIAIPTGVKVFSWLATLHGGTIKW DTPMLWALGFIFLFTVGGLTGIVLSNSSLDIVLHDTYYVVAHFHYVLSMGAVFAIMAG FVHWFPLFTGFSLHDTWTKIHFGVMFIGVNLTFFPQHFLGLAGMPRRYSDYPDAYTLW NTVSSIGSLISLVAVIIFLFILWEAFASKRQVMSVELTMTNVEWLHGCPPPYHTFEEP AFVQVRSN" CDS 8078..8768 /note="putative" /product="cytochrome c oxidase subunit II" /codon_start=1 /translation="MAHPTQLGFQDAASPVMEELLHFHDHALMIVFLISALVLYVIIT TVSTKLTNMYILDSQEIEIVWTVLPALILILIALPSLRILYLMDEINDPHLTIKAMGH QWYWSYEYTDYENLSFDSYMIPTQDLTPGQFRLLETDHRMVVPMESPIRILVSAEDVL HSWALPAMGVKMDAVPGRLNQTAFIASRPGVFYGQCSEICGANHSFMPIVVEAVPLSH FENWSTLMLKDA" CDS 8846..9013 /note="putative" /product="ATPase 8" /codon_start=1 /translation="MPQLNPAPWFTILVFSWMIFLAIIPTKVMGHTSPNDSSPLSTEK HKTESWDWPWQ" CDS 9004..9687 /note="putative" /product="ATPase 6" /codon_start=1 /translation="MAMSFFDQFASPSYLGIPLIAIAIALPWVLFPLPSLRWVNNRLI TIQGWLINRFTNQLMLPLNTGGHKWALLLASLMVFLITINMLGLLPYTFTPTTQLSLN MGLAIPLWLATVIIGLRNQPTVALGDLLPEGTPLPLIPVLIIIETISLFIRPLALGVR LTANLTAGHLLIQLIATAVFVLLPMMPTVAILTATVLFLLTLLEVAVAMIQAYVFVLL LSLYLQENV" CDS 9687..10472 /note="putative" /product="cytochrome c oxidase III" /codon_start=1 /translation="MAHQAHAYHMVDPSPWPLTGAIRALFLTSGLAIWFHFQSVTLLT LGLILLLLTMYQWWRDIIREGTFQGHHTPPVQKGLRYGMILFITSEVFFFLGFFWAFY HSSLAPTPELGGCWPPTGITPLDPFEVPLLNTAVLLASGVTVTWAHHSLMEGARKQAI QALALTIILGVYFTALQAMEYYEAPFTIADGVYGSTFFVATGFHGLHVIIGSSFLAVC LLRQIQYHFTSEHHFGFEAAAWYWHFVDVVWLFLYVSIYWWGS" CDS 10544..10894 /note="putative" /product="NADH dehydrogenase subunit 3" /codon_start=1 /translation="MNLVISILAITIILSSILAVVSFWLPQMNPDAEKLSPYECGFDP LGSARLPFSIRFFLVAILFLLFDLEIALLLALPWGDQLYSATGTFFWATAVLILLTLG LIYEWTQGGLEWAE" CDS 10963..11259 /note="putative" /product="NADH dehydrogenase subunit 4L" /codon_start=1 /translation="MTPVHFSFTSAFILGLMGLAFYRTHLLSALLCLEGMMLSLFIAL ALWALQFESTGFSTAPMLLLAFSACEASAGPGLLVATARTHGTDRLQNLNLLQC" CDS 11253..12635 /note="putative" /product="NADH dehydrogenase subunit 4" /codon_start=1 /translation="MLKVLIPTIMLFPTIWLTPPKWLWSTTTAHGLLIALISLTWLKW SSEVGSATSSLYLASDPLSTPLLGLTCWLLPLMVLASQNHITPEPIIRQRLYITLLAS LQTFLIMAFGATEIIMFYIMFEATLIPTLIIITRWGNQTERLNAGTYFLFYTLAGSLP LLVALLLLQQTNGTLSLLILQHSQPLALTSWGHKIWWAGCLIAFLVKMPLYGVHLWLP KAHVEAPVAGSMVLAAVLLKLGGYGMMRMMVVLDPLSKELAYPFIILALWGIIMTGSI CLRQTDLKSLIAYSSVSHMGLVAGGILIQTPWGFTGAIILMIAHGLVSSALFCLANTA YERTHSRTMILARGLQMIFPLTAVWWFIANLANLALPPLPNLMGELMIITTLFNWSPL TIILTGTGTLITAGYSLYLFLMSQRGPTPKHIVGLPPFHTREHLLMALHLIPVLLLMT KPEIMWGWCY" CDS 12847..14683 /note="putative" /product="NADH dehydrogenase subunit 5" /codon_start=1 /translation="MHPTPLILSSSLLLVIIILIYPVLTSLNPNPQNPKWATSHVKTA VSSAFLISLLPLAVFLDQGTETIVTNWHWMNTTMFDINISFKFDYYSLVFTPIALYVT WSILEFASWYMHADPYVNRFFKYLLTFLIAMITLVTANNMFQLFIGWEGVGIMSFLLI GWWYGRADANTAALQAWIYNRVGDIGLIMSMAWLAMNLNSWEIQQIFFLSKDFDMTLP LMGLILAATGKSAQFGLHPWLPAAMEGPTPVSALLHSSTMVVAGIFLLIRLHAIMENN QLALTTCLCLGALTSLFTAACALTQNDIKKIVAFSTSSQLGLMMVTIGLNQPQLAFLH ICTHAFFKAMLFLCSGSIIHSLNDEQDIRKMGGLQNLLPFTSTCLTIGSLALTGTPFL AGFFSKDAIIEAMNTSYLNAWALTLTLIATSFTAVYSFRVVFFVSMGTPRFLPLSPIN ENNPAVINPIKRLAWGSIIAGLIITSNLLPSKSPVMTMPPTLKMAALMVTAIGLFTAM ELATLTSKQYKTNPITQTHHFSNMLGFFPSVVHRLMKKLNLTLGQLAATQMVDQTWFE AAGPKGASSTQIKMAKITSDTQRGMIKTYLTIFLLTTALATRLATI" CDS complement(14682..15203) /note="putative" /product="NADH dehydrogenase subunit 6" /codon_start=1 /translation="MTYLVSLLLMALIVGLIAVASNPAPYFAALGLVVAAGVGCGVLV SHGGSFLSLVLFLIYLGGMLVVFAYSAALAAEPFPEAWGDRSVVGYVMIYLLGVGLMV GVFWEGWYEGSWVVIDGLKEFSVLRGDTSGVAEMYSYGGGMLVICAWVLLLTLFVVLE LTRGLSRGTIRAV" CDS 15278..16418 /note="putative" /product="cytochrome b" /codon_start=1 /translation="MASLRKTHPLIKIANDALVDLPAPSNISVWWNFGSLLGLCLITQ ILTGLFLAMHYTSDISTAFSSVAHICRDVNYGWLIRNIHANGASFFFICLYLHIARGL YYGSYLYKETWNIGVVLFLLVMMTAFVGYVLPWGQMSFWGATVITNLLSAVPYVGDML VQWIWGGFSVDNATLTRFFAFHFLFPFIVAAVTILHLLFLHETGSNNPAGLNSDADKI SFHPYFSYKDLLGFVVMLLGLTTLALFSPNLLGDPENFTPANPLVTPPHIKPEWYFLF AYAILRSIPNKLGGVLALLFSILVLMVVPVLHTSKQRGLTFRPATQFLFWTLVADMII LTWIGGMPVEHPYIIIGQIASILYFALFLILIPLAGWLENKALEWV" BASE COUNT 4876 a 4743 c 2791 g 4148 t ORIGIN BASE COUNT 594 a 418 c 338 g 330 t 9095 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~G C--------- ----caaaca 301 |GCU--AGC| UUA------- -|-------- ---------- ---------| -----(---- 361 ---------) -|-------- -------|-- -------(-- ---------- ---------- 421 -------)-- ---------- ---------- ---------- ---------- -----(---- 481 )---|----- --(-----)- ---------- ---------- ---------- -(------)- 541 ---------- ---------- ---- ---------- |-----AAAC 841 UAA(ACCA)U UUU------- ---------- ---------- ---------- --------uc 901 ------(--- --)------- |cac-cuUA- -GUAC-G(-G GCGA)CGGAA -Aagga---- 961 -------<-- --uccgau-- ---------- ---------- ---------- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- --->------ 1201 ---------- ---------- ---------- ---------< ---------- ---------- 1261 ---------- ---------- ---------> (------)-- ---------- ---|-(---) 1321 -------(-- -----)---- ---------- ---------- ---------- --<------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- >--------- ------(--- ---------- 1561 -------)-- ---------- ---------- -(-------) ---------- ---------- 1621 ---------- U-AA-GCGAU AGAA-AA--- ---AGUACC( -GCAA-)GGG ---AAA-GC- 1681 UGaaaaagaa augaaacaac ccaua----- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- -----uaa-G C-CAAA GCAGAG---- --------<- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------> (--acacaac 2041 --)------- -----CUC-G UACCUU(UU- GCAUC)AUGA |UUU-AGCCA GAaca--cc- 2101 caagcaaag- ---------- -------(-- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- -)-------- ---------- 2521 ----(----- )-----<--- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- agac->---- --(------) ---------- ---------- -cuuuaguuu 2701 gaa-acCCCG AA-ACCAA-G UG-AGCUACC CCG-GGA-CC GCCA------ ---------- 2761 -(-------- ---------- ---------- ---------- -----acau) ---------- 2821 -GGGCCAA-C CC-AUCUCU( GUGGCAA-A) AGAG-UGGGG --AGAGCCC- CGGGUAG-AG 2881 GU(G-AUAG) ACC-UACC-G A-ACUUGGUG AUAGCU-GGU UGUCU--GGG AA-AUG-AAU 2941 (-AGAA)GUU CA-GC-CUCG CACC<----- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ------->-- ---|------ 3061 -|------|- ---------- ---------- --------(- --------)< ccuugaguua 3121 aaua-----a gaaacacucu aacauaa--- ---------- ---------- ---------- 3181 ----cacaaa aagagaa--- ---------- ---------- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---->----- ---------- 3301 ---------- ---------- ----|----- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ------AC-G -CGAG-AGUU AGUCA--AA- GG-GG(-GUA 3481 CAG)CCCCUC UG-AU----- -aAAGA(AUA -CAA)CCUua gccag-g-ag -ga-UAA--- 3541 --ggaucaua cuuaaca-a- aacacg---- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ------ucgu c<-------- ---------- ---------- 3721 ---------- ---------- ---------- ---------- -->UCAGU-G GGC(CCAAAA 3781 GC-A)-GCCA -UCUG|A(U- CA)-|GAAAG C(--GUUAAA )GC|-UCAa- acga--<--- 3841 --cacaaagu uuauuauucu gauaaacaa- ---------- ---------- ---------- 3901 ->-------- -------|-- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- ---------- 4021 ---------- ---------- ---------- ---------- ---------- ---------- 4081 -------|uc ccac--ucc| c--c-ua|-- ---------- ---------- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- ---------- ---------- ---------- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- -----aaauu aCCAG-AC|- UA-UUCCAUG ---------- 4501 ---------- ---------- (cccc---)< ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ------->-- ---------- ---------| CAUGGAAGAA ACUAUGC-UA 4681 AA|AUGAGUA -ACAA-GGG- ggu------- (-caug---- ---------- ---------- 4741 ---------- -----)---- --gcc-|ccc u-cccg-GCA CAA--gugua a|----gcca 4801 gacc----gg ---------- ----(--acc ca)c-c|--a cuggca---- ---------- 4861 ---auuaa-- -cga------ ---------- -------(-- ---------- ------)<-- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 >--------- ---------- ---------- ----(----- ---------- ---------- 5041 ---------- ---------- ----)----- |-----|--- ---------- |--<------ 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ---------- ---------- 5221 ---------- ---------- ---------- ---------- ---------- ---------- 5281 ---------- ---------- ---------- ---------- ---------- ---------- 5341 ---------- ---------- ---------- ---------- ---------- ---------- 5401 ---------- ---------- ------->-- ---------- ---------- ---------- 5461 -----(---- ------)--- ---|------ --------|- ---------- -(-----)-- 5521 |--------- ---------- ---------- -----(---- )--------- ---------- 5581 --<------- ---------- ---------- ---------- ---------- ---------- 5641 ---------- ---------- ------->-- ---------- ---------- ---<------ 5701 ---------- acccaaaaaa agagggaugc auggaaga-c aaaaaaccaa gaaaacccca 5761 uguuauaaca a--------- ---------- ---------- ---------- ---------- 5821 ---------- ---------- ---------- ---------- ---------- ---------- 5881 ---------- ---------- ---------- ---------- ---------- ---------- 5941 ---------- ---------- ---------- ---------- ---------- ---------- 6001 ---------- ---------- ---------- ---------- ---------- ---------- 6061 ---------- ---------- ---------- ---------- ---------- ---------- 6121 ---------- ---------- ---------- ---------- ---------- ---------- 6181 ---------- ---------- ---------- ---------- ---------- ---------- 6241 ---------- ---------- ---------- ---------- ---------- ---------- 6301 ---------- ---------- ---------- ---------- ---------- ---------- 6361 ---------- ---------- ---------- ---------- ---------- ---------- 6421 ---------- ---------- ------>--- ---------- ---------- --ucg--|-- 6481 -c-UAACCC- -(CACACU)G G|AGUGC--- ----(ccc-c ------)--- ----aggaa| 6541 |---AGAC-U A--AAAGAAA -AGGA-AGGA ACUCGGCAAA ---------- ---------- 6601 ---------- ---------- ---------- ---------- ---------- ---------- 6661 ---------- ---------- ---------- ---------- ---------- ---------- 6721 ---------- ---------- ---------- ---------- ---------- ---------- 6781 ------(--- )--------c aUAAGCCU|C GC---CUG-U UU(ACCAA)A AA-CAUC-GC 6841 CUCCUG|C-- ---------- ---------- (-aaaccacg aa----)--- ---------- 6901 ------GUA- UAG-GAGGUC CAGCCU<--- ---------- ---------- ---------- 6961 ---------- ---------- -------->G CC-CA-GU|G AC-------- ---------- 7021 ---------- --(------- ---------- ---------- ---------- ---------- 7081 ---------- ---------- -------cua caa)------ ---------- ---------| 7141 ---GUUC-AA C-|GG-C|-C -GCUGU-(AU -UUUG)ACCG UG|C(AAA)- GG-UAGCGCA 7201 AUC-AC-U-U |GUCUUU(-U AAAU-)AAAG AC|CU-GUAU GAAUGGCCAA A-CGAGGGCU 7261 UA-------- ---------- -------ACU GUCUCCCCUU UCAA-GU-CA ----GUGAAA 7321 UU|G|AUCUG CC-CG(U-GC AGAAG)CGGA CAU----AAA CCUACAAGAC GAGAAG-ACC 7381 CUUUGG-|-A GCUUA--AGG UA|--c-aaa ccc--aa--| <--------- ---------- 7441 ---------- ---------- --->------ ---------- ---------- ---------- 7501 ---------- ---------- ---------- --<---ccac -gucaagcaa ccaca-uaaa 7561 ug-gcauaaa auua------ -gugagua-- ---------- ---------- ---------- 7621 ---------- ---------- ---------> --(------- -)-------- ---------- 7681 ---------- -------|-- ---------- ---------- ---------- ---------- 7741 -----(---- ----)----- ---------- ---------- ---------- --------<- 7801 ---------- ---------- ---------- ---------- ---------- ---------- 7861 ---------- ---------- ---------- ---------- ---------- ---------- 7921 ---------- ---------- ---------- ---------- ---------- ---------- 7981 ---------- ---------- ---------- ---------- ---------- ---------- 8041 ---------- ---------- ---------- ---------- ---------- ---------- 8101 ---------- ---------- ----->---- --gug-g-aa -uu---U-UA CUUCGGUUG( 8161 GGG)CG-AC- C|ACGGAG(- --------AA AAAAAGAUC- )CUCC-GA|G |u|gg---|< 8221 ---------- ---------- ---------- ---------- ---------- ---------- 8281 ---------- ---------- ---------- ---------- ---------- -------acu 8341 gagccaacaa gcuuaaa--- ---------- ---------- ---------- ->-------- 8401 ---------- ---------- ---------- ---------- ---------- ---------- 8461 ---------- ---------- ---------- ---------- ---------- ---------- 8521 ---------- ---------- ---------- ---------- ---------- ---------- 8581 ---------- ---------- ---------- ---------- ---------- ---------- 8641 ---------- ---------- ---------- ---------- ---------- ---------- 8701 ---------- ---------- ---------- ---------- --|------- ---------- 8761 ---------- acuac-gaa( -aaacau--- )uucuu-ucu -cucuauccc ucug------ 8821 ---------- ---------- ---------- ---------- ---------- --------ac 8881 c|---aaaua UGAUC-cgac ---------- ---------- ---(------ ---------- 8941 ---------- ---------- ---------- ---------- -----cuaua aa)--|---G 9001 UCGAUCAAC- |GAA-CCAAG UUACCC|UAG G|GAUUACAG |C-GCA-A-U CCUCUCCCAG 9061 AG(U--CCAU )AUCGACGAG --AGGGUUUA CG-ACCUCGA UGUU|GG--A U|C|AGGAC| 9121 AU-CC-UAAU GG-UG(--CA -GC)CGCUAU UAAG-GGU|U CGUU(UGUUC )AACGA-UUA 9181 A--AGUCCU- --ACGUGAUC UGAGUUCAGU CU|GG-U(GU AA)UCCAGGU CAGUUUCUAU 9241 CU|GUA---- --|-|<---- ---------- ---------- ---------- ----acguu- 9301 >--------- ---------- --A-CUU-UU CC--(UAGU- AC(-GAAA)G GAACc)GGAA 9361 A--AG-- agggcca-ac ac-------- 9421 -|-------- (-----) 9541 ---------- ---------- gugc-gcccu acc------- ---------- -------ccu 9601 ---------- ---aauuaau (gaaacc--a acuaa)a-uu -aa-gcaaag g--------- 9661 ---------- ---------| ------(--- )--------- -------|ug 9961 cc-(aaaaua a--)-ggcca c~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10021 ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~~~ 10141 ~~~~~~~~~~ ~~~~~~~~~~ ~)~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10201 ~~~~~~~~~~ ~|~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10321 ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ||||| // LOCUS (17)-Parac 10775 bp RNA RNA 09-JAN-1999 DEFINITION Paracanthopterygii. ACCESSION No information KEYWORDS No information. SOURCE Paracanthopterygii. ORGANISM Paracanthopterygii. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 10775) Corresponding GenBank entry: DIVIDER BASE COUNT 0 a 0 c 0 g 0 t 10775 others ORIGIN 1 |......... .......... .......... .......... .......... .......... 61 .......... .......... .......... .......... .......... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......... .......... .......... .......... 241 .......... .......... .......... .......... .......... .......... 301 .......... .......... .......... .......... .......... .......... 361 .......... .......... .......... .......... .......... .......... 421 .......... .......... .......... .......... .......... .......... 481 .......... .......... .......... .......... .......... .......... 541 .......... .......... .......... .......... .......... .......... 601 .......... .......... .......... .......... .......... .......... 661 .......... .......... .......... .......... .......... .......... 721 .......... .......... .......... .......... .......... .......... 781 .......... .......... .......... .......... .......... .......... 841 .......... .......... .......... .......... .......... .......... 901 .......... .......... .......... .......... .......... .......... 961 .......... .......... .......... .......... .......... .......... 1021 .......... .......... .......... .......... .......... .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .......... .......... .......... .......... .......... 1201 .......... .......... .......... .......... .......... .......... 1261 .......... .......... .......... .......... .......... .......... 1321 .......... .......... .......... .......... .......... .......... 1381 .......... .......... .......... .......... .......... .......... 1441 .......... .......... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... .......... .......... .......... .......... .......... 1621 .......... .......... .......... .......... .......... .......... 1681 .......... .......... .......... .......... .......... .......... 1741 .......... .......... .......... .......... .......... .......... 1801 .......... .......... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .......... .......... 1921 .......... .......... .......... .......... .......... .......... 1981 .......... .......... .......... .......... .......... .......... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... .......... .......... .......... .......... .......... 2161 .......... .......... .......... .......... .......... .......... 2221 .......... .......... .......... .......... .......... .......... 2281 .......... .......... .......... .......... .......... .......... 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... .......... 2701 .......... .......... .......... .......... .......... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... .......... 2881 .......... .......... .......... .......... .......... .......... 2941 .......... .......... .......... .......... .......... .......... 3001 .......... .......... .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .......... .......... 3181 .......... .......... .......... .......... .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .......... .......... .......... 3361 .......... .......... .......... .......... .......... .......... 3421 .......... .......... .......... .......... .......... .......... 3481 .......... .......... .......... .......... .......... .......... 3541 .......... .......... .......... .......... .......... .......... 3601 .......... .......... .......... .......... .......... .......... 3661 .......... .......... .......... .......... .......... .......... 3721 .......... .......... .......... .......... .......... .......... 3781 .....-.... .......... .......... .......... .......... .......... 3841 .......... .......... .......... .......... .......... .......... 3901 .......... .......... .......... .......... .......... .......... 3961 .......... .......... .......... .......... .......... .......... 4021 .......... .......... .......... .......... .......... .......... 4081 .......... .......... .......... .......... .......... .......... 4141 .......... .......... .......... .......... .......... .......... 4201 .......... .......... .......... .......... .......... .......... 4261 .......... .......... .......... .......... .......... .......... 4321 .......... .......... .......... .......... .......... .......... 4381 .......... .......... .......... .......... .......... .......... 4441 .......... .......... .......... .......... .......... .......... 4501 .......... .......... .......... .......... .......... .......... 4561 .......... .......... .......... .......... .......... .......... 4621 .......... .......... .......... .......... .......... .......... 4681 .......... .......... .......... .......... .......... .......... 4741 .......... .......... .......... .......... .......... .......... 4801 .......... .......... .......... ..)....... .......... .......... 4861 .......... .......... .......... .......... .......... .......... 4921 .......... .......... .......... .......... .......... .......... 4981 .......... .......... .......... .......... .......... .......... 5041 .......... .......... .......... .......... .......... .......... 5101 .......... .......... .......... .......... .......... .......... 5161 .......... .......... .......... .......... .......... .......... 5221 .......... .......... .......... .......... .......... .......... 5281 .......... .......... .......... .......... .......... .......... 5341 .......... .......... .......... .......... .......... .......... 5401 .......... .......... .......... .......... .......... .......... 5461 .......... .......... .......... .......... .......... .......... 5521 .......... .......... .......... .......... .......... .......... 5581 .......... .......... .......... .......... .......... .......... 5641 .......... .......... .......... .......... .......... .......... 5701 .......... .......... .......... .......... .......... .......... 5761 .......... .......... .......... .......... .......... .......... 5821 .......... .......... .......... .......... .......... .......... 5881 .......... .......... .......... .......... .......... .......... 5941 .......... .......... .......... .......... .......... .......... 6001 .......... .......... .......... .......... .......... .......... 6061 .......... .......... .......... .......... .......... .......... 6121 .......... .......... .......... .......... .......... .......... 6181 .......... .......... .......... .......... .......... .......... 6241 .......... .......... .......... .......... .......... .......... 6301 .......... .......... .......... .......... .......... .......... 6361 .......... .......... .......... .......... .......... .......... 6421 .......... .......... .......... .......... .......... .......... 6481 .......... .......... .......... .......... .......... .......... 6541 .......... .......... .......... .......... .......... .......... 6601 .......... .......... .......... .......... .......... .......... 6661 .......... .......... .......... .......... .......... .......... 6721 .......... .......... .......... .......... .......... .......... 6781 .......... .......... .......... .......... .......... .......... 6841 .......... .......... .......... .......... .......... .......... 6901 .......... .......... .......... .......... .......... .......... 6961 .......... .......... .......... .......... .......... .......... 7021 .......... .......... .......... .......... .......... .......... 7081 .......... .......... .......... .......... .......... .......... 7141 .......... .......... .......... .......... .......... .......... 7201 .......... .......... .......... .......... .......... .......... 7261 .......... .......... .......... .......... .......... .......... 7321 .......... .......... .......... .......... .......... .......... 7381 .......... .......... .......... .......... .......... .......... 7441 .......... .......... .......... .......... .......... .......... 7501 .......... .......... .......... .......... .......... .......... 7561 .......... .......... .......... .......... .......... .......... 7621 .......... .......... .......... .......... .......... .......... 7681 .......... .......... .......... .......... .......... .......... 7741 .......... .......... .......... .......... .......... .......... 7801 .......... .......... .......... .......... .......... .......... 7861 .......... .......... .......... .......... .......... .......... 7921 .......... .......... .......... .......... .......... .......... 7981 .......... .......... .......... .......... .......... .......... 8041 .......... .......... .......... .......... .......... .......... 8101 .......... .......... .......... .......... .......... .......... 8161 .......... .......... .......... .......... .......... .......... 8221 .......... .......... .......... .......... .......... .......... 8281 .......... .......... .......... .......... .......... .......... 8341 .......... .......... .......... .......... .......... .......... 8401 .......... .......... .......... .......... .......... .......... 8461 .......... .......... .......... .......... .......... .......... 8521 .......... .......... .......... .......... .......... .......... 8581 .......... .......... .......... .......... .......... .......... 8641 .......... .......... .......... .......... .......... .......... 8701 .......... .......... .......... .......... .......... .......... 8761 .......... .......... .......... .......... .......... .......... 8821 .......... .......... .......... .......... .......... .......... 8881 .......... .......... .......... .......... .......... .......... 8941 .......... .......... .......... .......... .......... .......... 9001 .......... .......... .......... .......... .......... .......... 9061 .......... .......... .......... .......... .......... .......... 9121 .......... .......... .......... .......... .......... .......... 9181 .......... .......... .......... .......... .......... .......... 9241 .......... .......... .......... .......... .......... .......... 9301 .......... .......... .......... .......... .......... .......... 9361 .......... .......... .......... .......... .......... .......... 9421 .......... .......... .......... .......... .......... .......... 9481 .......... .......... .......... .......... .......... .......... 9541 .......... .......... .......... .......... .......... .......... 9601 .......... .......... .......... .......... .......... .......... 9661 .......... .......... .......... .......... .......... .......... 9721 .......... .......... .......... .......... .......... .......... 9781 .......... .......... .......... .......... .......... .......... 9841 .......... .......... .......... .......... .......... .......... 9901 .......... .......... .......... .......... .......... .......... 9961 .......... .......... .......... .......... .......... .......... 10021 .......... .......... .......... .......... .......... .......... 10081 .......... .......... .......... .......... .......... .......... 10141 .......... .......... .......... .......... .......... .......... 10201 .......... .......... .......... .......... .......... .......... 10261 .......... .......... .......... .......... .......... .......... 10321 .......... .......... .......... .......... .......... .......... 10381 .......... .......... .......... .......... .......... .......... 10441 .......... .......... .......... .......... .......... .......... 10501 .......... .......... .......... .......... .......... .......... 10561 .......... .......... .......... .......... .......... .......... 10621 .......... .......... .......... .......... .......... .......... 10681 .......... .......... .......... .......... .......... .......... 10741 .......... .......... .......... ||||| // LOCUS mt.G.morhu 10775 bp RNA RNA 08-AUG-1996 DEFINITION Mitochondrion Gadus morhua.; 12S ribosomal RNA; 12S rRNA gene; 16S ribosomal RNA; 16S rRNA gene; ATPase; cytochrome C; cytochrome oxidase; NADH dehydrogenase; transfer RNA-Ala; transfer RNA-Arg; transfer RNA-Asn; transfer RNA-Asp; transfer RNA-Cys; transfer RNA-Gln; transfer RNA-Glu; transfer RNA-Gly; transfer RNA-His; transfer RNA-Ile; transfer RNA-Leu; transfer RNA-Lys; transfer RNA-Met; transfer RNA-Phe; transfer RNA-Pro; transfer RNA-Ser; transfer RNA-Thr; transfer RNA-Trp; transfer RNA-Tyr; transfer RNA-Val; tRNA-Ala gene; tRNA-Arg gene; tRNA-Asn gene; tRNA-Asp gene; tRNA-Cys gene; tRNA-Gln gene; tRNA-Glu gene; tRNA-Gly gene; tRNA-His gene; tRNA-Ile gene; tRNA-Leu gene; tRNA-Lys gene; tRNA-Met gene; tRNA-Phe gene; tRNA-Pro gene; tRNA-Ser gene; tRNA-Thr gene; tRNA-Trp gene; tRNA-Tyr gene; tRNA-Val gene. ACCESSION X99772 KEYWORDS 12S ribosomal RNA; 12S rRNA gene; 16S ribosomal RNA; 16S rRNA gene; ATPase; cytochrome C; cytochrome oxidase; NADH dehydrogenase; transfer RNA-Ala; transfer RNA-Arg; transfer RNA-Asn; transfer RNA-Asp; transfer RNA-Cys; transfer RNA-Gln; transfer RNA-Glu; transfer RNA-Gly; transfer RNA-His; transfer RNA-Ile; transfer RNA-Leu; transfer RNA-Lys; transfer RNA-Met; transfer RNA-Phe; transfer RNA-Pro; transfer RNA-Ser; transfer RNA-Thr; transfer RNA-Trp; transfer RNA-Tyr; transfer RNA-Val; tRNA-Ala gene; tRNA-Arg gene; tRNA-Asn gene; tRNA-Asp gene; tRNA-Cys gene; tRNA-Gln gene; tRNA-Glu gene; tRNA-Gly gene; tRNA-His gene; tRNA-Ile gene; tRNA-Leu gene; tRNA-Lys gene; tRNA-Met gene; tRNA-Phe gene; tRNA-Pro gene; tRNA-Ser gene; tRNA-Thr gene; tRNA-Trp gene; tRNA-Tyr gene; tRNA-Val gene. SOURCE Mitochondrion Gadus morhua. ORGANISM Mitochondrion Gadus morhua. REFERENCE 1 (bases 1 to 16696) AUTHORS Johansen,S. and Bakke,I. TITLE The complete mitochondrial DNA sequence of Atlantic cod, Gadus morhua: relevance to taxonomic studies among cod-fishes JOURNAL Mol. Marine Biol. Biotechnol. In press STANDARD No information REFERENCE 2 (bases 1 to 16696) AUTHORS Johansen,S. TITLE Direct Submission JOURNAL Submitted (01-AUG-1996) S. Johansen, Institute of Medical Biology, University of Tromso, MH-Building, Breivika, 9037 Tromso, NORWAY STANDARD No information COMMENTS Sequence information (bases 1 to 10775) Corresponding GenBank entry: X99772 BASE COUNT 550 a 392 c 340 g 387 t 9106 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~uG C--------- ----cuaaca 301 |GCu--AGC| CUC------- -|-------- ---------- ---------| -----(---- 361 ---------) -|-------- -------|-- -------(-- ---------- ---------- 421 -------)-- ---------- ---------- ---------- ---------- -----(---- 481 )---|----- --(-----)- ---------- ---------- ---------- -(------)- 541 ---------- ---------- ---- ---------- |-----UAAA 841 CAA(AUCA)U UUU------- ---------- ---------- ---------- --------ac 901 ------(--- --)------- |ccc-cugA- -GUAC-G(-G GCGA)CAGAA -aagga---- 961 -------<-- --gaa----- ---------- ---------- ---------- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- --->------ 1201 ---------- ---------- ---------- ---------< ---------- ---------- 1261 ---------- ---------- ---------> (------)-- ---------- ---|-(---) 1321 -------(-- -----)---- ---------- ---------- ---------- --<------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- >--------- ------(--- ---------- 1561 -------)-- ---------- ---------- -(-------) ---------- ---------- 1621 ---------- A-AGAGCAAC AGAC-AA--- ---AGUACC( -GCAA-)GGG ---AAC-GC- 1681 ugaaaaagaa augaaauaaa ccauu----- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- -----uaa-G C-AGCA GCAGAG---- --------<- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------> (--uuuucua 2041 --)------- -----CUC-G UACCUU(UU- GCAUC)AUGA |UUU-AGCAA GAaaa--cua 2101 caagcaaag- ---------- -------(-- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- -)-------- ---------- 2521 ----(----- )-----<--- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- agcc->---- --(------) ---------- ---------- -cuuuaguuu 2701 gua-acCCCG AA-ACUGA-G CG-AGCUACU CCA-AGA-CA GCCU------ ---------- 2761 -(-------- ---------- ---------- ---------- ----auaaa) ---------- 2821 -GGGCAAA-C CC-GUCUCU( GUGGCAA-A) AGAG-UGGGA --AGAGCUU- UGAGUAG-AG 2881 GU(G-ACAA) ACC-UACC-G A-GCCCAGUU AUAGCU-GGU UGCCU--GUG AA-AUG-AAU 2941 (-AGGA)GUU CA-GC-CCUU UAAG<----- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ------->-- ---|------ 3061 -|------|- ---------- ---------- --------(- --------)< ucuuuccccc 3121 cuca-----c ccaugcuuac gcuaaaa--- ---------- ---------- ---------- 3181 ----uugauu aaggaaa--- ---------- ---------- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---->----- ---------- 3301 ---------- ---------- ----|----- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ------CU-A -AAGG-CGUU AAUCA--AA- AG-GG(-GUA 3481 CAG)CCCUUU UG-AU----- -aGAAG(AAA -CAA)CUU-u aacag-g-ug -accCAA--- 3541 --gaucauau uacccaa-g- gauuu----- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ------caaa u<-------- ---------- ---------- 3721 ---------- ---------- ---------- ---------- -->UAAGU-G GGC(CUAAAA 3781 GC-A)-GCCA -UCUU|-(au -c)a|GAAAG C(--GUUAAA )GC|-UCAa- auua--<--- 3841 ---gccuaua uccucauaua cugauauuac ---------- ---------- ---------- 3901 ->-------- -------|-- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- ---------- 4021 ---------- ---------- ---------- ---------- ---------- ---------- 4081 -------|au cucc--cuc| c--c-ug|-- ---------- ---------- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- ---------- ---------- ---------- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ----ccccuu aCCAG-GC|- UG-UCUUAUG ---------- 4501 ---------- ---------- (cccc---)< ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ------->-- ---------- ---------| CAUAAGAACA AUUAUGC-UA 4681 AA|AUGAGUA -AUAA-GAA- gaa------- (-uuuaauuc ---------- ---------- 4741 ---------- -----)---- --uuc-|ucc u----a-GCA CAU--gugua a|----gucg 4801 gaac----gg ---------- ----(--acc uc)c-c|--a ccgacu---- ---------- 4861 ---auuaau- -cga------ ---------- -------(-- ---------- ------)<-- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 >--------- ---------- ---------- ----(----- ---------- ---------- 5041 ---------- ---------- ----)----- |-----|--- ---------- |--<------ 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ---------- ---------- 5221 ---------- ---------- ---------- ---------- ---------- ---------- 5281 ---------- ---------- ---------- ---------- ---------- ---------- 5341 ---------- ---------- ---------- ---------- ---------- ---------- 5401 ---------- ---------- ------->-- ---------- ---------- ---------- 5461 -----(---- ------)--- ---|------ --------|- ---------- -(-----)-- 5521 |--------- ---------- ---------- -----(---- )--------- ---------- 5581 --<------- ---------- ---------- ---------- ---------- ---------- 5641 ---------- ---------- ------->-- ---------- ---------- ---<------ 5701 --------cc ccaaacccag aggguaauag gucaaaaaaa caagaaaaac accuauuuua 5761 ua-------- ---------- ---------- ---------- ---------- ---------- 5821 ---------- ---------- ---------- ---------- ---------- ---------- 5881 ---------- ---------- ---------- ---------- ---------- ---------- 5941 ---------- ---------- ---------- ---------- ---------- ---------- 6001 ---------- ---------- ---------- ---------- ---------- ---------- 6061 ---------- ---------- ---------- ---------- ---------- ---------- 6121 ---------- ---------- ---------- ---------- ---------- ---------- 6181 ---------- ---------- ---------- ---------- ---------- ---------- 6241 ---------- ---------- ---------- ---------- ---------- ---------- 6301 ---------- ---------- ---------- ---------- ---------- ---------- 6361 ---------- ---------- ---------- ---------- ---------- ---------- 6421 ---------- ---------- ------>--- ---------- ---------- --ucgu-|-- 6481 ---UAACCC- -(CACACA)G G|uGUGC--- ----(cuaa- ------)--- ----aggaa| 6541 |---AGAC-U A--AAAGAGA -AGGA-AGGA ACUCGGCAAA ---------- ---------- 6601 ---------- ---------- ---------- ---------- ---------- ---------- 6661 ---------- ---------- ---------- ---------- ---------- ---------- 6721 ---------- ---------- ---------- ---------- ---------- ---------- 6781 ------(--- )--------c acAAGCCU|C GC---CUG-U UU(ACCAA)A AA-CAUC-GC 6841 CUCUUG|c-- ---------- ---------- (--uccaaaa ------)--- ---------- 6901 ------aUA- UAA-GAGGUC CCGCCU<--- ---------- ---------- ---------- 6961 ---------- ---------- -------->G CC-CU-GU|G AC-------- ---------- 7021 ---------- --(------- ---------- ---------- ---------- ---------- 7081 ---------- ---------- --------ua uaa)------ ---------- ---------| 7141 ---GUUU-AA C-|GG-C|-C -GCGGU-(AU -UUUG)ACCG UG|C(GAA)- GG-UAGCGUA 7201 AUC-AC-U-U |GUCUUU(-U AAAU-)GAAG AC|CU-GUAU GAAUGGCAUC A-CGAGGGCU 7261 UA-------- ---------- -------GCU GUCUCCCAUC UCCA-GU-CA ----AUGAAA 7321 UU|G|ACCUC CC-CG(U-GC AGAGG)CGGG GAU----AAU UACAUAAGAC GAGAAG-ACC 7381 CUAUGG-|-A GCUUU--AGA CC|--u-aaa gua--agu-| <--------- ---------- 7441 ---------- ---------- --->------ ---------- ---------- ---------- 7501 ---------- ---------- ---------- --<------- ------cacg uuuaa-caug 7561 cu-gugauaa caguaaaaac uuagugauau u--------- ---------- ---------- 7621 ---------- ---------- ---------> --(------- -)-------- ---------- 7681 ---------- -------|-- ---------- ---------- ---------- ---------- 7741 -----(---- ----)----- ---------- ---------- ---------- --------<- 7801 ---------- ---------- ---------- ---------- ---------- ---------- 7861 ---------- ---------- ---------- ---------- ---------- ---------- 7921 ---------- ---------- ---------- ---------- ---------- ---------- 7981 ---------- ---------- ---------- ---------- ---------- ---------- 8041 ---------- ---------- ---------- ---------- ---------- ---------- 8101 ---------- ---------- ----->---- ----u-acug -aag--U-GU CUUUGGUUG( 8161 GGG)CG-AC- C|GCGGGG(- --------UA AAACACAAC- )CCCC-AU|G |u|gg---|< 8221 ---------- ---------- ---------- ---------- ---------- ---------- 8281 ---------- ---------- ---------- ---------- ---------- ------accg 8341 gggauauuau cccuaau--- ---------- ---------- ---------- ->-------- 8401 ---------- ---------- ---------- ---------- ---------- ---------- 8461 ---------- ---------- ---------- ---------- ---------- ---------- 8521 ---------- ---------- ---------- ---------- ---------- ---------- 8581 ---------- ---------- ---------- ---------- ---------- ---------- 8641 ---------- ---------- ---------- ---------- ---------- ---------- 8701 ---------- ---------- ---------- ---------- --|------- ---------- 8761 ---------- acuca-gag( ccuucuua-- )cucca-agu -aacagaaau ucug------ 8821 ---------- ---------- ---------- ---------- ---------- --------ac 8881 c|---uuuuc UGAUC-cggu ---------- ---------- ---(------ ---------- 8941 ---------- ---------- ---------- ---------- --------au a-)--|---A 9001 CCGAUCAAC- |GAA-CCGAG UUACCC|UAG G|GAUAACAG |C-GCA-A-U CCCCUCUCAG 9061 AG(C--CCAU )AUCGACGAG --GGGGUUUA CG-ACCUCGA UGUU|GG--A U|C|AGGAC| 9121 AU-CC-UAAU GG-UG(--CA -GC)CGCUAU UAAG-GGU|U CGUU(UGUUC )AACGA-UUA 9181 A--AGUCCU- --ACGUGAUC UGAGUUCAGA CC|GG-A(GU AA)UCCAGGU CAGUUUCUAU 9241 CU|AUG---- --|-|<---- ---------- ---------- ---------- --acaagcu- 9301 >--------- ---------- --c-UUU-UU CC--(-AGU- AC(-GAAA)G GACC-)GGAA 9361 A--AA-- ggggccu-au gc-------- 9421 -|-------- (-----) 9541 ---------- ---------- gcac-gcccc -uc------- ---------- -------ccc 9601 ---------- --uaaccgcu (gaaacc--c aauaa)a-gc -gg-auaagg g--------- 9661 ---------- ---------| ------(--- )--------- -------|cc 9961 ca-(aaaaga a--)-ugggu gu~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10021 ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~~~ 10141 ~~~~~~~~~~ ~~~~~~~~~~ ~)~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10201 ~~~~~~~~~~ ~|~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10321 ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ||||| // LOCUS mt.O.mykis 10775 bp RNA RNA 11-JAN-191 DEFINITION mitochondrion Oncorhynchus mykiss. ACCESSION No information KEYWORDS No information. SOURCE mitochondrion Oncorhynchus mykiss. ORGANISM mitochondrion Oncorhynchus mykiss. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 10775) Corresponding GenBank entry: L29771 LOCUS ONHMTCG 16660 bp ds-DNA Circular VRT 22-MAR-1994 DEFINITION Oncorhynchus mykiss mitochondrion complete genome. ACCESSION L29771 KEYWORDS complete genome. SOURCE Mitochondrion Oncorhynchus mykiss (organelle Mitochondrion Oncorhynchus mykiss) adult liver DNA. ORGANISM Mitochondrion Oncorhynchus mykiss Eukaryota; Animalia; Chordata; Vertebrata; Osteichthyes; Actinopterygii; Salmoniformes; Salmonoidei; Salmonidae. REFERENCE 1 (bases 1 to 16660) AUTHORS Zardoya,R., Bautista,J.M. and Garrido-Pertierra,A. TITLE The complete nucleotide sequence of the mitochondrial DNA of the Rainbow trout, Oncorhynchus mykiss JOURNAL Unpublished (1994) STANDARD full automatic COMMENT NCBI gi: 463153 FEATURES Location/Qualifiers D-loop 1..1003 /note="control region" tRNA 1004..1071 /anticodon=(pos:1034..1036,aa:Phe) /product="transfer RNA-Phe" /gene="tRNA-Phe" /note="putative" rRNA 1072..2015 /product="12S ribosomal RNA" /gene="12S rRNA" /note="putative" tRNA 2016..2087 /anticodon=(pos:2049..2051,aa:Val) /product="transfer RNA-Val" /gene="tRNA-Val" /note="putative" rRNA 2088..3767 /product="16S ribosomal RNA" /gene="16S rRNA" /note="putative" tRNA 3768..3843 /anticodon=(pos:3804..3806,aa:Leu) /product="transfer RNA-Leu" /gene="tRNA-Leu" /note="putative" tRNA 4819..4890 /anticodon=(pos:4851..4853,aa:Ile) /product="transfer RNA-Ile" /gene="tRNA-Ile" /note="putative" tRNA complement(4888..4958) /anticodon=(pos:4924..4926,aa:Gln) /product="transfer RNA-Gln" /gene="tRNA-Gln" /note="putative" tRNA 4958..5026 /anticodon=(pos:4988..4990,aa:Met) /product="transfer RNA-Met" /gene="tRNA-Met" /note="putative" tRNA 6079..6147 /anticodon=(pos:6111..6113,aa:Trp) /product="transfer RNA-Trp" /gene="tRNA-Trp" /note="putative" tRNA complement(6149..6217) /anticodon=(pos:6185..6187,aa:Ala) /product="transfer RNA-Ala" /gene="tRNA-Ala" /note="putative" tRNA complement(6219..6291) /anticodon=(pos:6257..6259,aa:Asn) /product="transfer RNA-Asn" /gene="tRNA-Asn" /note="putative" rep_origin complement(6292..6328) /standard_name="OriL" /note="Origin of L-strand replication; putative" tRNA complement(6329..6395) /anticodon=(pos:6365..6367,aa:Cys) /product="transfer RNA-Cys" /gene="tRNA-Cys" /note="putative" tRNA complement(6396..6466) /anticodon=(pos:6432..6434,aa:Tyr) /product="transfer RNA-Tyr" /gene="tRNA-Tyr" /note="putative" tRNA complement(8019..8089) /anticodon=(pos:8055..8057,aa:Ser) /product="transfer RNA-Ser" /gene="tRNA-Ser" /note="(UCN); putative" tRNA 8094..8166 /anticodon=(pos:8129..8131,aa:Asp) /product="transfer RNA-Asp" /gene="tRNA-Asp" /note="putative" tRNA 8872..8945 /anticodon=(pos:8906..8908,aa:Lys) /product="transfer RNA-Lys" /gene="tRNA-Lys" /note="putative" tRNA 10561..10630 /anticodon=(pos:10592..10594,aa:Gly) /product="transfer RNA-Gly" /gene="tRNA-Gly" /note="putative" tRNA 10981..11049 /anticodon=(pos:11011..11013,aa:Arg) /product="transfer RNA-Arg" /gene="tRNA-Arg" /note="putative" tRNA 12721..12789 /anticodon=(pos:12751..12753,aa:His) /product="transfer RNA-His" /gene="tRNA-His" /note="putative" tRNA 12790..12858 /anticodon=(pos:12817..12819,aa:Ser) /product="transfer RNA-Ser" /gene="tRNA-Ser" /note="(AGY); putative" tRNA 12860..12931 /anticodon=(pos:12893..12895,aa:Leu) /product="transfer RNA-Leu" /gene="tRNA-Leu" /note="(CUN); putative" tRNA complement(15307..15375) /anticodon=(pos:15343..15345,aa:Glu) /product="transfer RNA-Glu" /gene="tRNA-Glu" /note="putative" tRNA 16520..16591 /anticodon=(pos:16552..16554,aa:Thr) /product="transfer RNA-Thr" /gene="tRNA-Thr" /note="putative" tRNA complement(16591..16660) /anticodon=(pos:16627..16629,aa:Pro) /product="transfer RNA-Pro" /gene="tRNA-Pro" /note="putative" source 1..16660 /organism="Mitochondrion Oncorhynchus mykiss" /mitochondrion="Mitochondrion Oncorhynchus mykiss" /cell_type="hepatocyte" /dev_stage="adult" /sequenced_mol="DNA" /tissue_type="liver" CDS 3844..4815 /gene="NADH-1" /note="putative; NCBI gi: 463154." /product="NADH dehydrogenase subunit 1" /codon_start=1 /translation="MITLITHVINPLAYIVPVLLAVAFLTLLERKVLGYMQLRKGPNI VGPYGLLQPIADGLKLFIKETVRPSTSSPFLFLATPMLALTLALTLWAPMPIPYPVTD LNLGVLFVLALSSLAVYSILGSGWASNSKYALIGELRAVAQTISYEVSLGLILLSVII ITGGFTLQTFNVAQESIWLLVPAWPLAAMWYISTLAETNRAPFDLTEGESELVSGFNV EYAGGPFALFFLAEYANILLMNTLSAVLFLGASHIPAFPELTALNLMTKAALLSVVFL WVRASYPRFRYDQLMHLVWKSFLPLTLALVLWHLALPIALAGLPPQL" CDS 5027..6076 /gene="NADH-2" /note="putative; NCBI gi: 463155." /product="NADH dehydrogenase subunit 2" /codon_start=1 /translation="MNPYVLTILLSSLGLGTVLTFASSHWLLAWMGLEINTLAIIPIM AQQHHPRAIEATTKYFLTQATAAAMILFASTTNAWLVGEWEIHQLSHPLATTTVMLAL ALKLGLAPVHFWLPEVLQGLELTTGLILSTWQKLAPFALMIQVAPTINSSLLVTIGLL STLVGGWGGLNQTQLRKILAYLPIAHLGWMVLILQFAPSLTLLSLSLYIVMTSSAFLT LKTNNSLTINTLATSWTKSPTLAALTALVLLSLGGLPPLSGFMPKWLILQELTKQGLP LSATLAAMTALLSLYFYLRLCYALTLTIYPNTLTATAPWRLNFTMITLPLSITTIMAL GLLPLTPAVTAMLAL" CDS 6468..8018 /transl_except=(pos:6468..6470,aa:Met) /gene="COI" /note="putative; NCBI gi: 463156." /product="cytochrome oxidase subunit 1" /codon_start=1 /translation="MAITRWFFSTNHKDIGTLYLVFGAWAGMVGTALSLLIRAELSQP GALLGDDQIYNVIVTAHAFVMIFFMVMPIMIGGFGNWLIPLMIGAPDMAFPRMNNMSF WLLPPSFLLLLSSSGVEAGAGTGWTVYPPLAGNLAHAGASVDLTIFSLHLAGISSILG AINFITTIINMKPPAISQYQTPLFVWAVLVTAVLLLLSLPVLAAGITMLLTDRNLNTT FFDPAGGGDPILYQHLFWFFSHPEVYILILPGFGMISHIVAYYSGKKEPFGYMGMVWA MMAIGLLGFIVWAHHMFTVGMDVDTRAYFTSATMIIAIPTGVKVFSWLATLHGGSIKW ETPLLWALGFIFLFTVGGLTGIVLANSSLDIVLHDTYYVVAHFHYVLSMGAVFAIMGA FVHWFPLFTGYTLHSTWTKIHFGIMFIGVNLTFFPQHFLGLAGMPRRYSDYPDAYTLW NTVSSIGSLVSLVAVIMFLFILWEAFAAKREVASIELTSTNVEWLHGCPPPYHTFEEP AFVQVQAN" CDS 8181..8871 /gene="COII" /note="putative; NCBI gi: 463157." /product="cytochrome oxidase subunit 2" /codon_start=1 /translation="MAHPSQLGFQDAASPVMEELLHFHDHALMIVLLISTLVLYIIVA MVSTKLTNMYILDSQEIEIVWTVLPAVILILIALPSLRILYLMDEINDPHLTIKAMGH QWYWSYEYTDYEDLGFDSYMVPTQDLVPGQFRLLETDHRMVVPVESPIRVLVSAEDVL HSWAVPSLGVKMDAVPGRLNQTAFIASRPGVFYGQCSEICGANHSFMPIVVEAVPLEH FEKWSTMMLEDA" CDS 8947..9114 /gene="ATPase8" /note="putative; NCBI gi: 463158." /product="adenosine triphosphatase subunit 8" /codon_start=1 /translation="MPQLNPAPWFAILVFSWLVFLTVIPPKVLGHTFTNEPTSQSTEK AKPEPWNWPWH" CDS 9105..9776 /gene="ATPase6" /note="putative; NCBI gi: 463159." /product="adenosine triphosphatase subunit 6" /codon_start=1 /translation="MTLSFFDQFMSPTYLGIPLIAVALTLPWILFPTPSARWLNNRLI TLQGWFINRFTQQLLLPLNLGGHKWAALLTSLMLFLITLNMLGLLPYTFTPTTQLSLN MGLAVPLWLATVIIGMRNQPTAALGHLLPEGTPVPLIPVLIIIETISLFIRPALGVRL TANLTAGHQLIATAAFVLLPMMPTVAILTSIVLFLLTLLEIAVAMIQAYVFVLLLSLY LQENV" CDS 9776..10561 /gene="COIII" /note="putative; NCBI gi: 463160." /product="cytochrome oxidase subunit 3" /codon_start=1 /translation="MAHQAHAYHMVDPSPWPLTGAIAALLLTSGTAVWFHFHSLTLLT LGNILLLLTMYQWWRDIIREGTFQGHHTPPVQKGLRYGMILFITSEVFFFLGFFWAFY HASLAPTPELGGCWPPAGITTLDPFEVPLLNTAVLLASGVTVTWAHHSIMEGERKQTI QALTLTILLGFYFTFLQGMEYYEAPFTIADGVYGSTFFVATGFHGLHVIIGSTFLAVC LLRQVQYHFTSEHHFGFEAAAWYWHFVDVVWLFLYVSIYWWGS" CDS 10631..10979 /gene="NADH-3" /note="putative; NCBI gi: 463161." /product="NADH dehydrogenase subunit 3" /codon_start=1 /translation="MNLITTIITITITLSAVLATISFWLPQISPDAEKLSPYECGFDP LGSARLPFSLRFFLIAILFLLFDLEIALLLPLPWGDQLHTPTLTLIWSTAVLALLTLG LIYEWTQGGLEWAE" CDS 11050..11346 /gene="NADH-4L" /note="putative; NCBI gi: 463162." /product="NADH dehydrogenase subunit 4L" /codon_start=1 /translation="MTPVHFSFTSAFILGLMGLAFHRTHLLSALLCLEGMMLSLFIAL SLWALQMEATGYSVAPMLLLAFSACEASAGLALLVATARTHGTDRLQSLNLLQC" CDS 11340..12720 /gene="NADH-4" /note="putative; NCBI gi: 463163." /product="NADH dehydrogenase subunit 4" /codon_start=1 /translation="MLKILIPTLMLFPTIWLSPAKWLWTTSIAQSLIIALASLSWLKW SSETGWSSSNLYLATDPLSTPLLVLTCWLLPLMILASQSHLSPEPLNRQRAYISLLVS LQTFLVLAFGATEIIMFYVMFEATLLPTLIIITRWGNQTERLNAGTYFLFYTLAGSLP LLVALLLMQNDNGTLSMFTLQYTQPLHLLTWGDKLWWAACLLAFLVKMPLYGVHLWLP KAHVEAPIAGSMILAAVLLKLGGYGMMRMMVMLDPLTKELAYPFIVLALWGIIMTGSI CLRQTDLKSLIAYSSVGHMGLVAGGILIQTPWGFTGAIILMIAHGLASSALFCLANTS YERTHSRTMLLARGMQMILPLMTTWWFVASLANLALPPLPNLMGELMIITSMFNWSYW TLILTGLGTLITASYSLYLFLMTQRGPLPSHIIALEPTHTREHLLIILHLIPIVLLIL KPELMWGWCF" CDS 12932..14770 /gene="NADH-5" /note="putative; NCBI gi: 463164." /product="NADH dehydrogenase subunit 5" /codon_start=1 /translation="MHPTTLILSSSLLMIFTLLIYPLITTLTPTPQHKNWALTHVKTA IKMAFLVSLLPLFVFLDQGTETIVTNWQWMNTTTFDINLSFKFDHYSIIFTPIALYVT WSILEFASWYMHADPNMNRFFKYLLLFLIAMIILVTANNMFQLFIGWEGVGIMSFLLI GWWHGRADANTAAMQAVIYNRVGDIGLILSMAWFATNLNSWEIQQMFASSKGLDLTLP LMGLILAATGKSAQFGLHPWLPSAMEGPTPVSALLHSSTMVVAGIFLLIRLHPLMEDN QTALTVCLCLGALTTLFTATCALTQNDIKKIVAFSTSSQLGLMMVTIGLNQPQLAFLH ICTHAFFKAMLFLCSGSIIHSLNDEQDIRKMGGMHNLTPSTSSCLTIGSLALTGTPFL AGFFSKDAIIEALNTSHLNAWALTLTLLATSFTAIYSLRVIFFVSMGHPRFTATAPVN ENNPSVINPIKRLAWGSIIAGLLITSNFLPTNTPVMTMPTHLKLAALLVTISGLLIAL ELASLTNKQFKLHPTLTLHNFSNMLGFFPAIIHRLTPKLNLTLGQTIASQMVDHTWFE KVGPKELFQLTCLMVTTTSNIQQGMIKTYLTLFFLSTTLAVLLTLT" CDS complement(14767..15306) /gene="NADH-6" /note="putative; NCBI gi: 463165." /product="NADH dehydrogenase subunit 6" /codon_start=1 /translation="MTYLVSLFLLGLVLGLVAVASNPAPYFAALGLVVAAGVGCGVLV GHGGSFLSLVLFLIYLGGMLVVFAYSAALAAEPFPESWGDRSVLGDRSVLGYVVVYTV GVVLVAGLFWGGWYETSWVAVDEFKEFSVLRGDTSGVALMYSHGGGMLIACAWVLLLT LFVVLELTRGLSRGALRAV" CDS 15379..16519 /gene="Cyt b" /note="putative; NCBI gi: 463166." /product="cytochrome b" /codon_start=1 /translation="MANLRKTHPLLKIANDALVDLPAPSNISVWWNFGSLLGLCLATQ ILTGLFLAMHYTSDISTAFSSVCHICRDVSYGWLIRNIHANGASFFFICIYMHIARGL YYGSYLYKETWNIGVVLLLLTMMTAFVGYVLPWGQMSFWGATVITNLLSAVPYVGGAL VQWIWGGFSVDNATLTRFFAFHFLFPFVIAAATVLHLLFLHETGSNNPAGINSDADKI SFHPYFSYKDLLGFVAMLLGLTSLALFAPNLLGDPDNFTPANPLVTPPHIKPEWYFLF AYAILRSIPNKLGGVLALLFSILVLMVVPILHTSKQRGLTFRPLTQFLFWALVADMLI LTWIGGMPVEHPFIIIGQVASVIYFTIFLVLSPLAGWAEIKALQWA" BASE COUNT 4642 a 4818 c 2840 g 4360 t ORIGIN BASE COUNT 538 a 430 c 384 g 328 t 9095 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~G C--------- ----ugacua 301 |GCU--AGC| CAA------- -|-------- ---------- ---------| -----(---- 361 ---------) -|-------- -------|-- -------(-- ---------- ---------- 421 -------)-- ---------- ---------- ---------- ---------- -----(---- 481 )---|----- --(-----)- ---------- ---------- ---------- -(------)- 541 ---------- ---------- ---- ---------- |-----UCAA 841 CAA(ACCA)U UUU------- ---------- ---------- ---------- --------uc 901 ------(--- --)------- |cac-cuUA- -GUAG-G(-G GCGA)CCGAA -Aagga---- 961 -------<-- --gauaa--- ---------- ---------- ---------- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- --->------ 1201 ---------- ---------- ---------- ---------< ---------- ---------- 1261 ---------- ---------- ---------> (------)-- ---------- ---|-(---) 1321 -------(-- -----)---- ---------- ---------- ---------- --<------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- >--------- ------(--- ---------- 1561 -------)-- ---------- ---------- -(-------) ---------- ---------- 1621 ---------- U-UGAGCAAC AGAA-AA--- ---AGUACC( -GCAA-)GGG ---GAA-GC- 1681 UGaaagagaa uugaaauaac ccauu----- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- -----uaa-G C-AGAA GCAGAG---- --------<- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------> (--auuaaau 2041 --)------- -----CUC-G UACCUU(UU- GCAUC)AUGA |UUU-AGCCA GCaca--cc- 2101 ugagcaaag- ---------- -------(-- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- -)-------- ---------- 2521 ----(----- )-----<--- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- agaa->---- --(------) ---------- ---------- -cuuuaguuu 2701 agg-ccCCCG AA-ACUAG-A CG-AGCUACU CCG-GGA-CA GCCU------ ---------- 2761 -(-------- ---------- ---------- ---------- ---auugua) ---------- 2821 -GGGCCAA-C CC-GUCUCU( GUGGCAA-A) AGAG-UGGGA --CGAGCCC- CGAGUAG-AG 2881 GU(G-AUAA) ACC-UAUC-G A-GCCUAGUU AUAGCU-GGU UGCUU--AGG AA-AUG-AAU 2941 (-AGAA)GUU CA-GC-CCCC CGGC<----- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ------->-- ---|------ 3061 -|------|- ---------- ---------- --------(- --------)< uuucuuagga 3121 ccuu-----a agguaaaacu aauauug--- ---------- ---------- ---------- 3181 ----ucccaa agaaa----- ---------- ---------- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---->----- ---------- 3301 ---------- ---------- ----|----- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ------CC-A -GGAG-AGUU AGUCA--AA- GG-AG(-GUA 3481 CAG)CUCCUU UG-AA----- -cAAGG(ACA -CAA)CCU-u aacag-g-cg -gc-UAA--- 3541 --ggaucaua guuccaa-g- guaac----- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ------cugu u<-------- ---------- ---------- 3721 ---------- ---------- ---------- ---------- -->ACAGU-G GGC(CUAAGA 3781 GC-A)-GCCA -CCUG|C(A- CA)-|GAAAG C(--GUUAAA )GC|-UCAg- acag--<--- 3841 --auacaaac cucuuauccu gauaagaaa- ---------- ---------- ---------- 3901 ->-------- -------|-- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- ---------- 4021 ---------- ---------- ---------- ---------- ---------- ---------- 4081 -------|uc ccac--ccc| c--c-ua|-- ---------- ---------- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- ---------- ---------- ---------- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- -----accgu aCUAA-GC|- CG-UUCCAUG ---------- 4501 ---------- ---------- (cccc---)< ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ------->-- ---------- ---------| CAUGGAAGAG AUUAUGC-UA 4681 GA|AUGAGUA -AUAA-GAG- agu------- (-aca----- ---------- ---------- 4741 ---------- -----)---- --acu-|cuc u-ccca-GCA CAU--gugua a|----gucg 4801 gacc----gg ---------- ----(--acc cc)c-c|--a ccgaca---- ---------- 4861 ---aauaa-- -cga------ ---------- -------(-- ---------- ------)<-- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 >--------- ---------- ---------- ----(----- ---------- ---------- 5041 ---------- ---------- ----)----- |-----|--- ---------- |--<------ 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ---------- ---------- 5221 ---------- ---------- ---------- ---------- ---------- ---------- 5281 ---------- ---------- ---------- ---------- ---------- ---------- 5341 ---------- ---------- ---------- ---------- ---------- ---------- 5401 ---------- ---------- ------->-- ---------- ---------- ---------- 5461 -----(---- ------)--- ---|------ --------|- ---------- -(-----)-- 5521 |--------- ---------- ---------- -----(---- )--------- ---------- 5581 --<------- ---------- ---------- ---------- ---------- ---------- 5641 ---------- ---------- ------->-- ---------- ---------- ---<------ 5701 ---------- acccaaacca agagggaacu guaggccaga acaaacacca agaaaaaccu 5761 acaccaacaa a--------- ---------- ---------- ---------- ---------- 5821 ---------- ---------- ---------- ---------- ---------- ---------- 5881 ---------- ---------- ---------- ---------- ---------- ---------- 5941 ---------- ---------- ---------- ---------- ---------- ---------- 6001 ---------- ---------- ---------- ---------- ---------- ---------- 6061 ---------- ---------- ---------- ---------- ---------- ---------- 6121 ---------- ---------- ---------- ---------- ---------- ---------- 6181 ---------- ---------- ---------- ---------- ---------- ---------- 6241 ---------- ---------- ---------- ---------- ---------- ---------- 6301 ---------- ---------- ---------- ---------- ---------- ---------- 6361 ---------- ---------- ---------- ---------- ---------- ---------- 6421 ---------- ---------- ------>--- ---------- ---------- --ucg--|-- 6481 -u-UACCCC- -(CACACA)G G|AGUGC--- ----(ccc-a a-----)--- ----gggaa| 6541 |---AGAC-C C--AAAGGAA -GAGA-AGGA ACUCGGCAAA ---------- ---------- 6601 ---------- ---------- ---------- ---------- ---------- ---------- 6661 ---------- ---------- ---------- ---------- ---------- ---------- 6721 ---------- ---------- ---------- ---------- ---------- ---------- 6781 ------(--- )--------c aCAAGCCU|C GC---CUG-U UU(ACCAA)A AA-CAUC-GC 6841 CUCUUG|c-- ---------- ---------- (aaauca--- ------)--- ---------- 6901 ------aaa- CAUAGAGGU- CCGCCU<--- ---------- ---------- ---------- 6961 ---------- ---------- -------->G CC-CU-GU|G AC-------- ---------- 7021 ---------- --(------- ---------- ---------- ---------- ---------- 7081 ---------- ---------- --------ua ugg)------ ---------- ---------| 7141 ---GUUU-AA C-|GG-C|-C -GCGGU-(AU -UUUG)ACCG UG|C(GAA)- GG-UAGCGCA 7201 AUC-AC-U-U |GUCUUU(-U AAAU-)GAAG AC|CU-GUAU GAAUGGCAUC A-CGAGGGCU 7261 UA-------- ---------- -------GCU GUCUCCUCUU CCAA-GU-CA ----AUGAAA 7321 UU|G|AUCUG CC-CG(U-GC AGAAG)CGGA CAU----AAG CACAUAAGAC GAGAAG-ACC 7381 CUAUGG-|-A GCUUU--AGA CA|--c-cag gca--ga--| <--------- ---------- 7441 ---------- ---------- --->------ ---------- ---------- ---------- 7501 ---------- ---------- ---------- -- --(------- -)-------- ---------- 7681 ---------- -------|-- ---------- ---------- ---------- ---------- 7741 -----(---- ----)----- ---------- ---------- ---------- --------<- 7801 ---------- ---------- ---------- ---------- ---------- ---------- 7861 ---------- ---------- ---------- ---------- ---------- ---------- 7921 ---------- ---------- ---------- ---------- ---------- ---------- 7981 ---------- ---------- ---------- ---------- ---------- ---------- 8041 ---------- ---------- ---------- ---------- ---------- ---------- 8101 ---------- ---------- ----->---- --agc-c-ca -ua---U-GU CUUUGGUUG( 8161 GGG)CG-AC- C|GCGGGG(- --------GG AAAAUUAAG- )CCCC-CA|C |u|gu---|< 8221 ---------- ---------- ---------- ---------- ---------- ---------- 8281 ---------- ---------- ---------- ---------- ---------- --ggacuggg 8341 gggc--acu- gcccc----- ---------- ---------- ---------- ->-------- 8401 ---------- ---------- ---------- ---------- ---------- ---------- 8461 ---------- ---------- ---------- ---------- ---------- ---------- 8521 ---------- ---------- ---------- ---------- ---------- ---------- 8581 ---------- ---------- ---------- ---------- ---------- ---------- 8641 ---------- ---------- ---------- ---------- ---------- ---------- 8701 ---------- ---------- ---------- ---------- --|------- ---------- 8761 ------acca gccga-gag( -cuacag--- )cucua-agc accagaauau cug------- 8821 ---------- ---------- ---------- ---------- ---------- --------ac 8881 c|---aaaua UGAUC-cggc ---------- ---------- ---(------ ---------- 8941 ---------- ---------- ---------- ---------- ---------g aa)--|---c 9001 gcaUUCAAC- |GGA-CCGAG UUACCC|UAG G|GAUAACAG |C-GCA-A-U CCUCUCCCAG 9061 AG(U--CCCU )AUCGACGAG --GGGGUUUA CG-ACCUCGA UGUU|GG--A U|C|AGGAC| 9121 AU-CC-UAAU GG-UG(--CA -GC)CGCUAU UAAG-GGU|U CGUU(UGUUC )AACGA-UUA 9181 A--AGUCCU- --ACGUGAUC UGAGUUCAGA CC|GG-A(GU AA)UCCAGGU CAGUUUCUAU 9241 CU|AUG---- --|-|<---- ---------- ---------- ---------- ----aagug- 9301 >--------- ---------- --A-UGU-UU CC--(UAGU- AC(-GAAA)G GACC-)GGAA 9361 A--GA-- ggggccc-au gc-------- 9421 -|-------- (-----) 9541 ---------- ---------- gcac-gcccc acc------- ---------- -------ccc 9601 ---------- ---accugau (gaaggc--a acuaa)a-ac -ag-acaagg g--------- 9661 ---------- ---------| ------(--- )--------- -------|gc 9961 cu-(aaaaga a--)-cggcg c~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10021 ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~~~ 10141 ~~~~~~~~~~ ~~~~~~~~~~ ~)~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10201 ~~~~~~~~~~ ~|~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10321 ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ||||| // LOCUS mt.S.salar 10775 bp RNA RNA 11-JAN-191 DEFINITION Mitochondrion Salmo salar. ACCESSION No information KEYWORDS No information. SOURCE Mitochondrion Salmo salar. ORGANISM Mitochondrion Salmo salar. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 10775) Corresponding GenBank entry: U12143 LOCUS SSMITOCH1 2841 bp DNA VRT 07-FEB-1996 DEFINITION Salmo salar mitochondrion tRNA-Phe, 12S rRNA, tRNA-Val, 16S rRNA, and tRNA-Leu genes, NADH-ubiquinone oxidoreductase subunit 1 gene, partial cds. ACCESSION U12143 NID g1181629 KEYWORDS . SEGMENT 1 of 4 SOURCE Atlantic salmon. ORGANISM Mitochondrion Salmo salar Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Actinopterygii; Neopterygii; Teleostei; Euteleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Salmo. REFERENCE 1 (bases 1 to 2841) AUTHORS Hurst,C.D., Bartlett,S.E. and Davidson,W.S. TITLE Mitochondrial DNA sequence of Atlantic salmon (Salmo salar) JOURNAL Unpublished REFERENCE 2 (bases 1 to 2841) AUTHORS Hurst,C.D. TITLE Direct Submission JOURNAL Submitted (09-JUL-1994) Carolyn D. Hurst, Norwood Laboratory, School of Chemical and Life Sciences, University of Greenwich, Wellington Street, Woolwich, London, SE18 6PF COMMENT NCBI gi: 1181629 FEATURES Location/Qualifiers source 1..2841 /clone="CH52" /mitochondrion /organism="Salmo salar" /tissue_type="liver" tRNA 1..68 /anticodon=(pos:31..33,aa:Phe) /product="tRNA-Phe" rRNA 69..1016 /product="12S rRNA" tRNA 1017..1087 /anticodon=(pos:1049..1051,aa:Val) /product="tRNA-Val" rRNA 1088..2759 /product="16S rRNA" tRNA 2760..2832 /anticodon=(pos:2794..2796,aa:Leu) /product="tRNA-Leu" CDS 2833..>2841 /note="NCBI gi: 1181634" /codon_start=1 /transl_table=2 /product="NADH-ubiquinone oxidoreductase subunit 1" /db_xref="PID:g1181634" BASE COUNT 908 a 736 c 631 g 562 t 4 others ORIGIN BASE COUNT 553 a 422 c 367 g 328 t 9105 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~G C--------- ----ugacua 301 |GCu--AGC| CAA------- -|-------- ---------- ---------| -----(---- 361 ---------) -|-------- -------|-- -------(-- ---------- ---------- 421 -------)-- ---------- ---------- ---------- ---------- -----(---- 481 )---|----- --(-----)- ---------- ---------- ---------- -(------)- 541 ---------- ---------- ---- ---------- |-----UCAA 841 CAA(ACCA)U UUU------- ---------- ---------- ---------- --------uc 901 ------(--- --)------- |cac-cuuA- -GUAC-G(-G GCGA)CGGAA -aagga---- 961 -------<-- --aacaau-- ---------- ---------- ---------- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- --->------ 1201 ---------- ---------- ---------- ---------< ---------- ---------- 1261 ---------- ---------- ---------> (------)-- ---------- ---|-(---) 1321 -------(-- -----)---- ---------- ---------- ---------- --<------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- >--------- ------(--- ---------- 1561 -------)-- ---------- ---------- -(-------) ---------- ---------- 1621 ---------- U-UGAGCAAC AGAA-AA--- ---AGUACC( -GCAA-)GGA ---AAG--C- 1681 ugaaagagaa augaaacaac ccauu----- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- -----uaa-G C-AAAA GCAGAG---- --------<- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------> (--auuaaau 2041 --)------- -----CUC-G UACCUU(UU- GCAUC)AUGA |UUU-AGCCA GCaaa--cc- 2101 cgagcaaag- ---------- -------(-- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- -)-------- ---------- 2521 ----(----- )-----<--- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- agaa->---- --(------) ---------- ---------- -cuuuaguuc 2701 ag--gcCCCG AA-ACUAG-A CG-AGCUACU C-C-GGA-CA GCCU------ ---------- 2761 -(-------- ---------- ---------- ---------- ---auuaua) ---------- 2821 -GGGCCAA-C CC-GUCUCU( GUGGCAA-A) AGAG-UGGA- --CGAGCCC- CGAGUAG-AG 2881 GU(G-ACAA) ACC-UAUC-G A-GCCUAGUU AUAGCU-GGU UGCUU--AGG AA-AUG-AAU 2941 (-AGAA)GUU CA-GC-CCCC UGGC<----- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ------->-- ---|------ 3061 -|------|- ---------- ---------- --------(- --------)< cuucuuagga 3121 ccuc-----a agguaaaacu aaccuug--- ---------- ---------- ---------- 3181 ----ucccaa agaaa----- ---------- ---------- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---->----- ---------- 3301 ---------- ---------- ----|----- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ------CC-A -AGAG-AGUU AAUCA--AA- GG-AG(-GUA 3481 CAG)CUCCUU UG-AA----- -cAAGG(ACA -CAA)CCU-u aacag-g-cg -gc-UAA--- 3541 --ggaucaua auuacua-a- ggcaac---- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ------cugu u<-------- ---------- ---------- 3721 ---------- ---------- ---------- ---------- -->ACAGU-G GGC(CUAAGA 3781 GC-A)-GCCA -CCUG|-(ca -u)a|GAAAG C(--GUUAAA )GC|-UCAg- acag--<--- 3841 ---auauaag ccucuuaucc ugauaaaaaa ---------- ---------- ---------- 3901 ->-------- -------|-- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- ---------- 4021 ---------- ---------- ---------- ---------- ---------- ---------- 4081 -------|uc cuac--ccc| c--c-ua|-- ---------- ---------- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- ---------- ---------- ---------- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- -----accgu aCUAA-GC|- CG-UUCCAUG ---------- 4501 ---------- ---------- (cuca---)< ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ------->-- ---------- ---------| CAUGGAAGCG AUUAUGC-UA 4681 GA|AUGAGUA -AUAA-GAG- agg------- (-acaac--- ---------- ---------- 4741 ---------- -----)---- --ucuc|ucc c----a-GCA CAU--gugua a|----gucg 4801 gacc----gg ---------- ----(--acc cg)c-c|--a ccgaca---- ---------- 4861 ---aauaa-- -cga------ ---------- -------(-- ---------- ------)<-- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 >--------- ---------- ---------- ----(----- ---------- ---------- 5041 ---------- ---------- ----)----- |-----|--- ---------- |--<------ 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ---------- ---------- 5221 ---------- ---------- ---------- ---------- ---------- ---------- 5281 ---------- ---------- ---------- ---------- ---------- ---------- 5341 ---------- ---------- ---------- ---------- ---------- ---------- 5401 ---------- ---------- ------->-- ---------- ---------- ---------- 5461 -----(---- ------)--- ---|------ --------|- ---------- -(-----)-- 5521 |--------- ---------- ---------- -----(---- )--------- ---------- 5581 --<------- ---------- ---------- ---------- ---------- ---------- 5641 ---------- ---------- ------->-- ---------- ---------- ---<------ 5701 ---------a cccaagccaa gagggaacug uagcccagaa caaauaccga gaaaaaccua 5761 caucaacaaa ---------- ---------- ---------- ---------- ---------- 5821 ---------- ---------- ---------- ---------- ---------- ---------- 5881 ---------- ---------- ---------- ---------- ---------- ---------- 5941 ---------- ---------- ---------- ---------- ---------- ---------- 6001 ---------- ---------- ---------- ---------- ---------- ---------- 6061 ---------- ---------- ---------- ---------- ---------- ---------- 6121 ---------- ---------- ---------- ---------- ---------- ---------- 6181 ---------- ---------- ---------- ---------- ---------- ---------- 6241 ---------- ---------- ---------- ---------- ---------- ---------- 6301 ---------- ---------- ---------- ---------- ---------- ---------- 6361 ---------- ---------- ---------- ---------- ---------- ---------- 6421 ---------- ---------- ------>--- ---------- ---------- --ucgu-|-- 6481 ---UAACCC- -(CACACA)G G|AGUGC--- ----(ucaca ------)--- ----gggaa| 6541 |---AGAC-C U--AAAGGAA -GAGA-AGGA ACUCGGCAAA ---------- ---------- 6601 ---------- ---------- ---------- ---------- ---------- ---------- 6661 ---------- ---------- ---------- ---------- ---------- ---------- 6721 ---------- ---------- ---------- ---------- ---------- ---------- 6781 ------(--- )--------c acAAGCCU|C GC---CUG-U UU(ACCAA)A AA-CAUC-GC 6841 CUCUUG|U-- ---------- ---------- (aaaucaaa- ------)--- ---------- 6901 ------ACA- UAA-GAGGUC CCGCCU<--- ---------- ---------- ---------- 6961 ---------- ---------- -------->G CC-CU-GU|G AC-------- ---------- 7021 ---------- --(------- ---------- ---------- ---------- ---------- 7081 ---------- ---------- --------ua ugg)------ ---------- ---------| 7141 ---GUUU-AA C-|GG-C|-C -GCGGU-(AU -UUUG)ACCG UG|C(GAA)- GG-UAGCGCA 7201 AUC-AC-U-U |GUCUUU(-U AAAU-)GAAG AC|CU-GUAU GAAUGGCAUC A-CGAGGGCU 7261 UA-------- ---------- -------GCU GUCUCCUCUU CCAA-GU-CA ----AUGAAA 7321 UU|G|AUCUG CC-CG(U-GC AGAAG)CGGA CAU----AAA CACAUAAGAC GAGAAG-ACC 7381 CUAUGG-|-A GCUUU--AGA CA|--c-cag gca--gau-| <--------- ---------- 7441 ---------- ---------- --->------ ---------- ---------- ---------- 7501 ---------- ---------- ---------- --<------- ---cacguca aguaa-ccuu 7561 ga-auuaaca aguaaaaacg cagugacccc u--------- ---------- ---------- 7621 ---------- ---------- ---------> --(------- -)-------- ---------- 7681 ---------- -------|-- ---------- ---------- ---------- ---------- 7741 -----(---- ----)----- ---------- ---------- ---------- --------<- 7801 ---------- ---------- ---------- ---------- ---------- ---------- 7861 ---------- ---------- ---------- ---------- ---------- ---------- 7921 ---------- ---------- ---------- ---------- ---------- ---------- 7981 ---------- ---------- ---------- ---------- ---------- ---------- 8041 ---------- ---------- ---------- ---------- ---------- ---------- 8101 ---------- ---------- ----->---- ----a-gccc -aua--U-GU CUUUGGUUG( 8161 GGG)CG-AC- C|GCGGGG(- --------GA AAACAAAGC- )CCCC-AU|G |u|gg---|< 8221 ---------- ---------- ---------- ---------- ---------- ---------- 8281 ---------- ---------- ---------- ---------- ---------- ------acug 8341 ggggcacu-- gccac----- ---------- ---------- ---------- ->-------- 8401 ---------- ---------- ---------- ---------- ---------- ---------- 8461 ---------- ---------- ---------- ---------- ---------- ---------- 8521 ---------- ---------- ---------- ---------- ---------- ---------- 8581 ---------- ---------- ---------- ---------- ---------- ---------- 8641 ---------- ---------- ---------- ---------- ---------- ---------- 8701 ---------- ---------- ---------- ---------- --|------- ---------- 8761 ---------a accaa-gag( -ucacaa--- )cucua-agu -accagaauu ucug------ 8821 ---------- ---------- ---------- ---------- ---------- --------ac 8881 c|---aaaaa UGAUC-cggc ---------- ---------- ---(------ ---------- 8941 ---------- ---------- ---------- ---------- -------auc ac)--|---G 9001 CCGAUCAAC- |GGA-CCGAG UUACCC|UAG G|GAUAACAG |C-GCA-A-U CCUCUCCCAG 9061 AG(U--CCU- )AUCGACGAG --GGG-UUUA CG-ACCUCGA UGUU|GG--A U|C|AGGAC| 9121 AU-CC-UAAU GG-UG(--CA -GC)CGCUAU UAAG-GGU|U CGUU(UGUUC )AACGA-UUA 9181 A--AGUCCU- --ACGUGAUC UGAGUUCAGA CC|GG-A(GU AA)UCCAGGU CAGUUUCUAU 9241 CU|AUG---- --|-|<---- ---------- ---------- ---------- -----aagug 9301 >--------- ---------- --a-Ugu-UU CC--(UAGU- AC(-GAAA)G GACC-)GGAA 9361 A--gA-- ggggccc-au gc-------- 9421 -|-------- (-----) 9541 ---------- ---------- gcac-gcccc -au------- ---------- -------ccc 9601 ---------- --caccugau (gaaggc--a acuaa)a-ac -ag-aaaagg g--------- 9661 ---------- ---------| ------(--- )--------- -------|gc 9961 cc-(aaaaga a--)-cggnn ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10021 ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~~~ 10141 ~~~~~~~~~~ ~~~~~~~~~~ ~)~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10201 ~~~~~~~~~~ ~|~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10321 ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ||||| // LOCUS (13)-lobe 10775 bp RNA RNA 09-JAN-1999 DEFINITION lobe-finned fish and tetrapod clade. ACCESSION No information KEYWORDS No information. SOURCE lobe-finned fish and tetrapod clade. ORGANISM lobe-finned fish and tetrapod clade. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 10775) Corresponding GenBank entry: DIVIDER BASE COUNT 0 a 0 c 0 g 0 t 10775 others ORIGIN 1 |......... .......... .......... .......... .......... .......... 61 .......... .......... .......... .......... .......... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......... .......... .......... .......... 241 .......... .......... .......... .......... .......... .......... 301 .......... .......... .......... .......... .......... .......... 361 .......... .......... .......... .......... .......... .......... 421 .......... .......... .......... .......... .......... .......... 481 .......... .......... .......... .......... .......... .......... 541 .......... .......... .......... .......... .......... .......... 601 .......... .......... .......... .......... .......... .......... 661 .......... .......... .......... .......... .......... .......... 721 .......... .......... .......... .......... .......... .......... 781 .......... .......... .......... .......... .......... .......... 841 .......... .......... .......... .......... .......... .......... 901 .......... .......... .......... .......... .......... .......... 961 .......... .......... .......... .......... .......... .......... 1021 .......... .......... .......... .......... .......... .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .......... .......... .......... .......... .......... 1201 .......... .......... .......... .......... .......... .......... 1261 .......... .......... .......... .......... .......... .......... 1321 .......... .......... .......... .......... .......... .......... 1381 .......... .......... .......... .......... .......... .......... 1441 .......... .......... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... .......... .......... .......... .......... .......... 1621 .......... .......... .......... .......... .......... .......... 1681 .......... .......... .......... .......... .......... .......... 1741 .......... .......... .......... .......... .......... .......... 1801 .......... .......... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .......... .......... 1921 .......... .......... .......... .......... .......... .......... 1981 .......... .......... .......... .......... .......... .......... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... .......... .......... .......... .......... .......... 2161 .......... .......... .......... .......... .......... .......... 2221 .......... .......... .......... .......... .......... .......... 2281 .......... .......... .......... .......... .......... .......... 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... .......... 2701 .......... .......... .......... .......... .......... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... .......... 2881 .......... .......... .......... .......... .......... .......... 2941 .......... .......... .......... .......... .......... .......... 3001 .......... .......... .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .......... .......... 3181 .......... .......... .......... .......... .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .......... .......... .......... 3361 .......... .......... .......... .......... .......... .......... 3421 .......... .......... .......... .......... .......... .......... 3481 .......... .......... .......... .......... .......... .......... 3541 .......... .......... .......... .......... .......... .......... 3601 .......... .......... .......... .......... .......... .......... 3661 .......... .......... .......... .......... .......... .......... 3721 .......... .......... .......... .......... .......... .......... 3781 .....-.... .......... .......... .......... .......... .......... 3841 .......... .......... .......... .......... .......... .......... 3901 .......... .......... .......... .......... .......... .......... 3961 .......... .......... .......... .......... .......... .......... 4021 .......... .......... .......... .......... .......... .......... 4081 .......... .......... .......... .......... .......... .......... 4141 .......... .......... .......... .......... .......... .......... 4201 .......... .......... .......... .......... .......... .......... 4261 .......... .......... .......... .......... .......... .......... 4321 .......... .......... .......... .......... .......... .......... 4381 .......... .......... .......... .......... .......... .......... 4441 .......... .......... .......... .......... .......... .......... 4501 .......... .......... .......... .......... .......... .......... 4561 .......... .......... .......... .......... .......... .......... 4621 .......... .......... .......... .......... .......... .......... 4681 .......... .......... .......... .......... .......... .......... 4741 .......... .......... .......... .......... .......... .......... 4801 .......... .......... .......... ..)....... .......... .......... 4861 .......... .......... .......... .......... .......... .......... 4921 .......... .......... .......... .......... .......... .......... 4981 .......... .......... .......... .......... .......... .......... 5041 .......... .......... .......... .......... .......... .......... 5101 .......... .......... .......... .......... .......... .......... 5161 .......... .......... .......... .......... .......... .......... 5221 .......... .......... .......... .......... .......... .......... 5281 .......... .......... .......... .......... .......... .......... 5341 .......... .......... .......... .......... .......... .......... 5401 .......... .......... .......... .......... .......... .......... 5461 .......... .......... .......... .......... .......... .......... 5521 .......... .......... .......... .......... .......... .......... 5581 .......... .......... .......... .......... .......... .......... 5641 .......... .......... .......... .......... .......... .......... 5701 .......... .......... .......... .......... .......... .......... 5761 .......... .......... .......... .......... .......... .......... 5821 .......... .......... .......... .......... .......... .......... 5881 .......... .......... .......... .......... .......... .......... 5941 .......... .......... .......... .......... .......... .......... 6001 .......... .......... .......... .......... .......... .......... 6061 .......... .......... .......... .......... .......... .......... 6121 .......... .......... .......... .......... .......... .......... 6181 .......... .......... .......... .......... .......... .......... 6241 .......... .......... .......... .......... .......... .......... 6301 .......... .......... .......... .......... .......... .......... 6361 .......... .......... .......... .......... .......... .......... 6421 .......... .......... .......... .......... .......... .......... 6481 .......... .......... .......... .......... .......... .......... 6541 .......... .......... .......... .......... .......... .......... 6601 .......... .......... .......... .......... .......... .......... 6661 .......... .......... .......... .......... .......... .......... 6721 .......... .......... .......... .......... .......... .......... 6781 .......... .......... .......... .......... .......... .......... 6841 .......... .......... .......... .......... .......... .......... 6901 .......... .......... .......... .......... .......... .......... 6961 .......... .......... .......... .......... .......... .......... 7021 .......... .......... .......... .......... .......... .......... 7081 .......... .......... .......... .......... .......... .......... 7141 .......... .......... .......... .......... .......... .......... 7201 .......... .......... .......... .......... .......... .......... 7261 .......... .......... .......... .......... .......... .......... 7321 .......... .......... .......... .......... .......... .......... 7381 .......... .......... .......... .......... .......... .......... 7441 .......... .......... .......... .......... .......... .......... 7501 .......... .......... .......... .......... .......... .......... 7561 .......... .......... .......... .......... .......... .......... 7621 .......... .......... .......... .......... .......... .......... 7681 .......... .......... .......... .......... .......... .......... 7741 .......... .......... .......... .......... .......... .......... 7801 .......... .......... .......... .......... .......... .......... 7861 .......... .......... .......... .......... .......... .......... 7921 .......... .......... .......... .......... .......... .......... 7981 .......... .......... .......... .......... .......... .......... 8041 .......... .......... .......... .......... .......... .......... 8101 .......... .......... .......... .......... .......... .......... 8161 .......... .......... .......... .......... .......... .......... 8221 .......... .......... .......... .......... .......... .......... 8281 .......... .......... .......... .......... .......... .......... 8341 .......... .......... .......... .......... .......... .......... 8401 .......... .......... .......... .......... .......... .......... 8461 .......... .......... .......... .......... .......... .......... 8521 .......... .......... .......... .......... .......... .......... 8581 .......... .......... .......... .......... .......... .......... 8641 .......... .......... .......... .......... .......... .......... 8701 .......... .......... .......... .......... .......... .......... 8761 .......... .......... .......... .......... .......... .......... 8821 .......... .......... .......... .......... .......... .......... 8881 .......... .......... .......... .......... .......... .......... 8941 .......... .......... .......... .......... .......... .......... 9001 .......... .......... .......... .......... .......... .......... 9061 .......... .......... .......... .......... .......... .......... 9121 .......... .......... .......... .......... .......... .......... 9181 .......... .......... .......... .......... .......... .......... 9241 .......... .......... .......... .......... .......... .......... 9301 .......... .......... .......... .......... .......... .......... 9361 .......... .......... .......... .......... .......... .......... 9421 .......... .......... .......... .......... .......... .......... 9481 .......... .......... .......... .......... .......... .......... 9541 .......... .......... .......... .......... .......... .......... 9601 .......... .......... .......... .......... .......... .......... 9661 .......... .......... .......... .......... .......... .......... 9721 .......... .......... .......... .......... .......... .......... 9781 .......... .......... .......... .......... .......... .......... 9841 .......... .......... .......... .......... .......... .......... 9901 .......... .......... .......... .......... .......... .......... 9961 .......... .......... .......... .......... .......... .......... 10021 .......... .......... .......... .......... .......... .......... 10081 .......... .......... .......... .......... .......... .......... 10141 .......... .......... .......... .......... .......... .......... 10201 .......... .......... .......... .......... .......... .......... 10261 .......... .......... .......... .......... .......... .......... 10321 .......... .......... .......... .......... .......... .......... 10381 .......... .......... .......... .......... .......... .......... 10441 .......... .......... .......... .......... .......... .......... 10501 .......... .......... .......... .......... .......... .......... 10561 .......... .......... .......... .......... .......... .......... 10621 .......... .......... .......... .......... .......... .......... 10681 .......... .......... .......... .......... .......... .......... 10741 .......... .......... .......... ||||| // LOCUS (14)-Coela 10775 bp RNA RNA 09-JAN-1999 DEFINITION Coelacanthiformes. ACCESSION No information KEYWORDS No information. SOURCE Coelacanthiformes. ORGANISM Coelacanthiformes. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 10775) Corresponding GenBank entry: DIVIDER BASE COUNT 0 a 0 c 0 g 0 t 10775 others ORIGIN 1 |......... .......... .......... .......... .......... .......... 61 .......... .......... .......... .......... .......... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......... .......... .......... .......... 241 .......... .......... .......... .......... .......... .......... 301 .......... .......... .......... .......... .......... .......... 361 .......... .......... .......... .......... .......... .......... 421 .......... .......... .......... .......... .......... .......... 481 .......... .......... .......... .......... .......... .......... 541 .......... .......... .......... .......... .......... .......... 601 .......... .......... .......... .......... .......... .......... 661 .......... .......... .......... .......... .......... .......... 721 .......... .......... .......... .......... .......... .......... 781 .......... .......... .......... .......... .......... .......... 841 .......... .......... .......... .......... .......... .......... 901 .......... .......... .......... .......... .......... .......... 961 .......... .......... .......... .......... .......... .......... 1021 .......... .......... .......... .......... .......... .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .......... .......... .......... .......... .......... 1201 .......... .......... .......... .......... .......... .......... 1261 .......... .......... .......... .......... .......... .......... 1321 .......... .......... .......... .......... .......... .......... 1381 .......... .......... .......... .......... .......... .......... 1441 .......... .......... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... .......... .......... .......... .......... .......... 1621 .......... .......... .......... .......... .......... .......... 1681 .......... .......... .......... .......... .......... .......... 1741 .......... .......... .......... .......... .......... .......... 1801 .......... .......... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .......... .......... 1921 .......... .......... .......... .......... .......... .......... 1981 .......... .......... .......... .......... .......... .......... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... .......... .......... .......... .......... .......... 2161 .......... .......... .......... .......... .......... .......... 2221 .......... .......... .......... .......... .......... .......... 2281 .......... .......... .......... .......... .......... .......... 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... .......... 2701 .......... .......... .......... .......... .......... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... .......... 2881 .......... .......... .......... .......... .......... .......... 2941 .......... .......... .......... .......... .......... .......... 3001 .......... .......... .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .......... .......... 3181 .......... .......... .......... .......... .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .......... .......... .......... 3361 .......... .......... .......... .......... .......... .......... 3421 .......... .......... .......... .......... .......... .......... 3481 .......... .......... .......... .......... .......... .......... 3541 .......... .......... .......... .......... .......... .......... 3601 .......... .......... .......... .......... .......... .......... 3661 .......... .......... .......... .......... .......... .......... 3721 .......... .......... .......... .......... .......... .......... 3781 .....-.... .......... .......... .......... .......... .......... 3841 .......... .......... .......... .......... .......... .......... 3901 .......... .......... .......... .......... .......... .......... 3961 .......... .......... .......... .......... .......... .......... 4021 .......... .......... .......... .......... .......... .......... 4081 .......... .......... .......... .......... .......... .......... 4141 .......... .......... .......... .......... .......... .......... 4201 .......... .......... .......... .......... .......... .......... 4261 .......... .......... .......... .......... .......... .......... 4321 .......... .......... .......... .......... .......... .......... 4381 .......... .......... .......... .......... .......... .......... 4441 .......... .......... .......... .......... .......... .......... 4501 .......... .......... .......... .......... .......... .......... 4561 .......... .......... .......... .......... .......... .......... 4621 .......... .......... .......... .......... .......... .......... 4681 .......... .......... .......... .......... .......... .......... 4741 .......... .......... .......... .......... .......... .......... 4801 .......... .......... .......... ..)....... .......... .......... 4861 .......... .......... .......... .......... .......... .......... 4921 .......... .......... .......... .......... .......... .......... 4981 .......... .......... .......... .......... .......... .......... 5041 .......... .......... .......... .......... .......... .......... 5101 .......... .......... .......... .......... .......... .......... 5161 .......... .......... .......... .......... .......... .......... 5221 .......... .......... .......... .......... .......... .......... 5281 .......... .......... .......... .......... .......... .......... 5341 .......... .......... .......... .......... .......... .......... 5401 .......... .......... .......... .......... .......... .......... 5461 .......... .......... .......... .......... .......... .......... 5521 .......... .......... .......... .......... .......... .......... 5581 .......... .......... .......... .......... .......... .......... 5641 .......... .......... .......... .......... .......... .......... 5701 .......... .......... .......... .......... .......... .......... 5761 .......... .......... .......... .......... .......... .......... 5821 .......... .......... .......... .......... .......... .......... 5881 .......... .......... .......... .......... .......... .......... 5941 .......... .......... .......... .......... .......... .......... 6001 .......... .......... .......... .......... .......... .......... 6061 .......... .......... .......... .......... .......... .......... 6121 .......... .......... .......... .......... .......... .......... 6181 .......... .......... .......... .......... .......... .......... 6241 .......... .......... .......... .......... .......... .......... 6301 .......... .......... .......... .......... .......... .......... 6361 .......... .......... .......... .......... .......... .......... 6421 .......... .......... .......... .......... .......... .......... 6481 .......... .......... .......... .......... .......... .......... 6541 .......... .......... .......... .......... .......... .......... 6601 .......... .......... .......... .......... .......... .......... 6661 .......... .......... .......... .......... .......... .......... 6721 .......... .......... .......... .......... .......... .......... 6781 .......... .......... .......... .......... .......... .......... 6841 .......... .......... .......... .......... .......... .......... 6901 .......... .......... .......... .......... .......... .......... 6961 .......... .......... .......... .......... .......... .......... 7021 .......... .......... .......... .......... .......... .......... 7081 .......... .......... .......... .......... .......... .......... 7141 .......... .......... .......... .......... .......... .......... 7201 .......... .......... .......... .......... .......... .......... 7261 .......... .......... .......... .......... .......... .......... 7321 .......... .......... .......... .......... .......... .......... 7381 .......... .......... .......... .......... .......... .......... 7441 .......... .......... .......... .......... .......... .......... 7501 .......... .......... .......... .......... .......... .......... 7561 .......... .......... .......... .......... .......... .......... 7621 .......... .......... .......... .......... .......... .......... 7681 .......... .......... .......... .......... .......... .......... 7741 .......... .......... .......... .......... .......... .......... 7801 .......... .......... .......... .......... .......... .......... 7861 .......... .......... .......... .......... .......... .......... 7921 .......... .......... .......... .......... .......... .......... 7981 .......... .......... .......... .......... .......... .......... 8041 .......... .......... .......... .......... .......... .......... 8101 .......... .......... .......... .......... .......... .......... 8161 .......... .......... .......... .......... .......... .......... 8221 .......... .......... .......... .......... .......... .......... 8281 .......... .......... .......... .......... .......... .......... 8341 .......... .......... .......... .......... .......... .......... 8401 .......... .......... .......... .......... .......... .......... 8461 .......... .......... .......... .......... .......... .......... 8521 .......... .......... .......... .......... .......... .......... 8581 .......... .......... .......... .......... .......... .......... 8641 .......... .......... .......... .......... .......... .......... 8701 .......... .......... .......... .......... .......... .......... 8761 .......... .......... .......... .......... .......... .......... 8821 .......... .......... .......... .......... .......... .......... 8881 .......... .......... .......... .......... .......... .......... 8941 .......... .......... .......... .......... .......... .......... 9001 .......... .......... .......... .......... .......... .......... 9061 .......... .......... .......... .......... .......... .......... 9121 .......... .......... .......... .......... .......... .......... 9181 .......... .......... .......... .......... .......... .......... 9241 .......... .......... .......... .......... .......... .......... 9301 .......... .......... .......... .......... .......... .......... 9361 .......... .......... .......... .......... .......... .......... 9421 .......... .......... .......... .......... .......... .......... 9481 .......... .......... .......... .......... .......... .......... 9541 .......... .......... .......... .......... .......... .......... 9601 .......... .......... .......... .......... .......... .......... 9661 .......... .......... .......... .......... .......... .......... 9721 .......... .......... .......... .......... .......... .......... 9781 .......... .......... .......... .......... .......... .......... 9841 .......... .......... .......... .......... .......... .......... 9901 .......... .......... .......... .......... .......... .......... 9961 .......... .......... .......... .......... .......... .......... 10021 .......... .......... .......... .......... .......... .......... 10081 .......... .......... .......... .......... .......... .......... 10141 .......... .......... .......... .......... .......... .......... 10201 .......... .......... .......... .......... .......... .......... 10261 .......... .......... .......... .......... .......... .......... 10321 .......... .......... .......... .......... .......... .......... 10381 .......... .......... .......... .......... .......... .......... 10441 .......... .......... .......... .......... .......... .......... 10501 .......... .......... .......... .......... .......... .......... 10561 .......... .......... .......... .......... .......... .......... 10621 .......... .......... .......... .......... .......... .......... 10681 .......... .......... .......... .......... .......... .......... 10741 .......... .......... .......... ||||| // LOCUS mt.L.cha.1 10775 bp RNA RNA 11-JAN-191 DEFINITION mitochondrion Latimeria chalumnae. ACCESSION No information KEYWORDS No information. SOURCE mitochondrion Latimeria chalumnae. ORGANISM mitochondrion Latimeria chalumnae. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 10775) Corresponding GenBank entry: Z21921 ID MTLC12SRA standard; DNA; ORG; 2734 BP. XX AC Z21921; XX DT 14-JUN-1993 (Rel. 36, Created) DT 14-JUN-1993 (Rel. 36, Last updated, Version 2) XX DE L.chalumnae mitochondrion 12S and 16S rRNA genes, and tRNA-Val and DE -Leu genes. XX KW 12S ribosomal RNA; 16S ribosomal RNA; transfer RNA-Leu; KW transfer RNA-Val. XX OS Latimeria chalumnae OC Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Osteichthyes; OC Coelacanthiformes; Latimeriidae. XX OG Mitochondrion XX RN [1] RC (sites) RA Hedges S., Hass C.A., Maxson L.R.; RT "Relations of fish and tetrapods"; RL Nature 363:501-502(1993). XX RN [2] RP 1-2734 RA Hedges S.; RT ; RL Submitted (05-MAR-1993) on tape to the EMBL Data Library by: RL Hedges S., Pennsylvania State University, Biology, 208 Mueller Lab, RL University Park, PA, USA, 16802 XX FH Key Location/Qualifiers FH FT source 1..2734 FT /organism="Latimeria chalumnae" FT /mitochondrion FT rRNA 1..975 FT /product="12S rRNA" FT /citation=[1] FT tRNA 976..1042 FT /product="tRNA-Val" FT /citation=[1] FT rRNA 1043..2705 FT /product="16S rRNA" FT /citation=[1] FT tRNA 2706..2734 FT /product="tRNA-Leu" FT /citation=[1] XX SQ Sequence 2734 BP; 997 A; 676 C; 505 G; 556 T; 0 other; BASE COUNT 614 a 392 c 297 g 360 t 9112 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~G C--------- ----uauaua 301 |GCU--AGG| CCA------- -|-------- ---------- ---------| -----(---- 361 ---------) -|-------- -------|-- -------(-- ---------- ---------- 421 -------)-- ---------- ---------- ---------- ---------- -----(---- 481 )---|----- --(-----)- ---------- ---------- ---------- -(------)- 541 ---------- ---------- ---- ---------- |-----AACC 841 UAA(ACCA)U UUA------- ---------- ---------- ---------- --------c- 901 ------(--- --)------- |cau-ccAA- -GUAU-A(-G GCGA)UAGAA -Aagac---- 961 -------<-- --ac------ ---------- ---------- ---------- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- --->------ 1201 ---------- ---------- ---------- ---------< ---------- ---------- 1261 ---------- ---------- ---------> (------)-- ---------- ---|-(---) 1321 -------(-- -----)---- ---------- ---------- ---------- --<------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- >--------- ------(--- ---------- 1561 -------)-- ---------- ---------- -(-------) ---------- ---------- 1621 ---------- C-GGCACAAU AGUA-AA--- ---AGUACC( -GCAA-)GG- ---AAC-GC- 1681 UGaaaaagaa augaaacaac ucgua----- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- -----aaa-G C-AAAA CCAAAG---- --------<- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------> (--acuaacc 2041 --)------- -----CUU-G UACCUU(UU- GCAUU)AUGA |UCU-AGUUA GAccc--ac- 2101 cgggcaaaa- ---------- -------(-- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- -)-------- ---------- 2521 ----(----- )-----<--- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ugaa->---- --(------) ---------- ---------- -uuuaagucc 2701 aac-ccCCCG AA-ACUAA-G UG-AGCUACU UCG-AAA-CA GCCU------ ---------- 2761 -(-------- ---------- ---------- ---------- -----auga) ---------- 2821 -GGGCAAA-C CC-UUCUCU( GUGGCAA-A) AGAG-UGGGA --AGAUUUC- CAAGUAG-AG 2881 GC(G-AUAA) ACC-UAAC-G A-GCUUAGUG AUAGCU-GGU UAUUC--GAG AA-AUG-AUU 2941 (-UUUA)GUU CA-GC-CCCU CGGC<----- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ------->-- ---|------ 3061 -|------|- ---------- ---------- --------(- --------)< cuccaaaccc 3121 uaac-----a acauaaaacc aauguga--- ---------- ---------- ---------- 3181 ----gc---- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---->----- ---------- 3301 ---------- ---------- ----|----- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ------CA-G -AGAG-AGUU AUUCA--AA- GG-GG(-GUA 3481 CAG)CCCCUU UG-AA----- -aAAGG(ACA -CAA)CCU-u cuaagac-ag -ga-UAA--- 3541 --ag-acuau auuaacu-c- aaggaucag- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ------cugc c<-------- ---------- ---------- 3721 ---------- ---------- ---------- ---------- -->CAAGU-G GAC(CUAAAA 3781 GC-A)-GUCA -CCU-|-(-- aa)-|AAAAG C(--GUUAAA )GC|-UUAa- gcag--<--- 3841 --cacuaaac caaccuauac uaauaaauuu aa-------- ---------- ---------- 3901 ->-------- -------|-- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- ---------- 4021 ---------- ---------- ---------- ---------- ---------- ---------- 4081 -------|cc ucau--ucc| a--c-ca|-- ---------- ---------- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- ---------- ---------- ---------- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- -----ucacu aUCGA-AU|- UA-UUCUAU- ---------- 4501 ---------- ---------- (augc---)< ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ------->-- ---------- ---------| -AUAGAAGAA UAAAUGC-UA 4681 GA|AUUAGUA -ACAA-GAA- ggc------- (-cauuaa-- ---------- ---------- 4741 ---------- -----)---- --gcc-|uuc ucuaacuGCA UAA--gugua c|----auca 4801 gauu----ag ---------- ----(--auu aa)c-c|--a cugaua---- ---------- 4861 ---auuaa-- -cga------ ---------- -------(-- ---------- ------)<-- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 >--------- ---------- ---------- ----(----- ---------- ---------- 5041 ---------- ---------- ----)----- |-----|--- ---------- |--<------ 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ---------- ---------- 5221 ---------- ---------- ---------- ---------- ---------- ---------- 5281 ---------- ---------- ---------- ---------- ---------- ---------- 5341 ---------- ---------- ---------- ---------- ---------- ---------- 5401 ---------- ---------- ------->-- ---------- ---------- ---------- 5461 -----(---- ------)--- ---|------ --------|- ---------- -(-----)-- 5521 |--------- ---------- ---------- -----(---- )--------- ---------- 5581 --<------- ---------- ---------- ---------- ---------- ---------- 5641 ---------- ---------- ------->-- ---------- ---------- ---<------ 5701 ---------c uucaaagaga auacuaugac auaaaaca-- ---------a gaaaagcaca 5761 cacacccaca ---------- ---------- ---------- ---------- ---------- 5821 ---------- ---------- ---------- ---------- ---------- ---------- 5881 ---------- ---------- ---------- ---------- ---------- ---------- 5941 ---------- ---------- ---------- ---------- ---------- ---------- 6001 ---------- ---------- ---------- ---------- ---------- ---------- 6061 ---------- ---------- ---------- ---------- ---------- ---------- 6121 ---------- ---------- ---------- ---------- ---------- ---------- 6181 ---------- ---------- ---------- ---------- ---------- ---------- 6241 ---------- ---------- ---------- ---------- ---------- ---------- 6301 ---------- ---------- ---------- ---------- ---------- ---------- 6361 ---------- ---------- ---------- ---------- ---------- ---------- 6421 ---------- ---------- ------>--- ---------- ---------- --ucg--|-- 6481 -u-UAAUCC- -(AACACA)G G|AAUGC--- ----(aac-c ------)--- ----acgaa| 6541 |---AGAU-U A--AAAGAAA -GAAA-AGGA ACUCGGCAAA ---------- ---------- 6601 ---------- ---------- ---------- ---------- ---------- ---------- 6661 ---------- ---------- ---------- ---------- ---------- ---------- 6721 ---------- ---------- ---------- ---------- ---------- ---------- 6781 ------(--- )-------cu aUAAGCCC|C GC---CUG-U UU(ACCAA)A AA-CAUC-GC 6841 CUCCCG|C-- ---------- ---------- (caacaacag aa----)--- ---------- 6901 ------GUA- UUG-GAGGUC CCGCCU<--- ---------- ---------- ---------- 6961 ---------- ---------- -------->G CC-CA-GU|G AC-------- ---------- 7021 ---------- --(------- ---------- ---------- ---------- ---------- 7081 ---------- ---------- ---------- aag)------ ---------- ---------| 7141 ---AUUU-AA C-|GG-C|-C -GCGGU-(AU -CCUG)ACCG UG|C(AAA)- GG-UAGCGAA 7201 AUC-AC-U-U |GUCUUU(-U AAAU-)GAAG AC|CU-GUAU GAAUGGCACC A-CGAGGGCU 7261 UA-------- ---------- -------ACU GUCUCCUCUU UCCA-AU-CA ----GUAAAA 7321 UU|G|AUCUG UC-CG(U-GC AGAAG)CGGA CUU----AAC UACAUUAGAC GAGAAG-ACC 7381 CUGUGG-|-A GCUUC--AGA CA|--c-aaa gcc--aa--| <--------- ---------- 7441 ---------- ---------- --->------ ---------- ---------- ---------- 7501 ---------- ---------- ---------- --<---cuac --a--aauaa acacu-uaga 7561 ua-auaaauu gauaaaacca -guagccuaa uacu------ ---------- ---------- 7621 ---------- ---------- ---------> --(------- -)-------- ---------- 7681 ---------- -------|-- ---------- ---------- ---------- ---------- 7741 -----(---- ----)----- ---------- ---------- ---------- --------<- 7801 ---------- ---------- ---------- ---------- ---------- ---------- 7861 ---------- ---------- ---------- ---------- ---------- ---------- 7921 ---------- ---------- ---------- ---------- ---------- ---------- 7981 ---------- ---------- ---------- ---------- ---------- ---------- 8041 ---------- ---------- ---------- ---------- ---------- ---------- 8101 ---------- ---------- ----->---- --ggc-c-cu -au---U-GU CUUUGGUUG( 8161 GGG)CG-AC- C|ACGGAG(- --------AA AAAACAAUC- )CUCC-AA|G |c|cg---|< 8221 ---------- ---------- ---------- ---------- ---------- ---------- 8281 ---------- ---------- ---------- ---------- ---------- -------auu 8341 gguaccaccu guacua---- ---------- ---------- ---------- ->-------- 8401 ---------- ---------- ---------- ---------- ---------- ---------- 8461 ---------- ---------- ---------- ---------- ---------- ---------- 8521 ---------- ---------- ---------- ---------- ---------- ---------- 8581 ---------- ---------- ---------- ---------- ---------- ---------- 8641 ---------- ---------- ---------- ---------- ---------- ---------- 8701 ---------- ---------- ---------- ---------- --|------- ---------- 8761 --------aa acaaa-ggg( -uaacac--- )cccaa-agu aauaaaaauu uu-------- 8821 ---------- ---------- ---------- ---------- ---------- --------au 8881 c|---ggaca UGACC-cagg ---------- ---------- ---(------ ---------- 8941 ---------- ---------- ---------- ---------- -----aacua aa)--|---C 9001 CUGAUCAAC- |GAA-CCAAG UUACCC|CAG G|GAUAACAG |C-GCA-A-U CCUUUCCAAG 9061 AG(U--CCAA )AUCGACGAA --AGGGUUUA CG-ACCUCGA UGUU|GG--A U|C|AGGAC| 9121 AC-CC-CAUU GG-UG(--UA -AC)CGCUAU UAAU-GGU|U CGUU(UGUUC )AACGA-UUA 9181 A--AGUCCU- --ACGUGAUC UGAGUUCAGA CC|GG-A(GU AA)UCCAGGU CGGUUUCUAU 9241 CU|AUG---- --|-|<---- ---------- ---------- ---------- ---acuau-- 9301 >--------- ---------- --G-UCUcUU CC--(UAGU- AC(-GAAA)G GACC-)GGGG 9361 A--AA-- aaggccc-au gc-------- 9421 -|-------- (-----) 9541 ---------- ---------- guac-gccuu acc------- ---------- -------uau 9601 ---------- --aauuuaau (gcacgu--a acuaa)a-uu -aa--uaauu a--------- 9661 ---------- ---------| ------(--- )--------- -------|uc 9961 uc-(aaaaca a--)-gagaa c~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10021 ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~~~ 10141 ~~~~~~~~~~ ~~~~~~~~~~ ~)~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10201 ~~~~~~~~~~ ~|~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10321 ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ||||| // LOCUS mt.L.cha.2 10775 bp RNA RNA 02-APR-1997 DEFINITION Mitochondrion Latimeria chalumnae.; . ACCESSION U82228 KEYWORDS . SOURCE Mitochondrion Latimeria chalumnae. ORGANISM Mitochondrion Latimeria chalumnae. REFERENCE 1 (bases 1 to 16407) AUTHORS Zardoya,R. and Meyer,A. TITLE of the coelacanth, Latimeria chalumnae and the phylogenetic relationships among living sarcopterygians The complete nucleotide sequence of the mitochondrial genome JOURNAL Unpublished STANDARD No information REFERENCE 2 (bases 1 to 16407) AUTHORS Zardoya,R. TITLE Direct Submission JOURNAL Submitted (13-DEC-1996) Ecology & Evolution, State University of New York, 662 Life Sciences, Stony Brook, NY 11794-5245, USA STANDARD No information COMMENTS Sequence information (bases 1 to 10775) Corresponding GenBank entry: U82228 BASE COUNT 619 a 396 c 302 g 348 t 9110 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~G C--------- ----uauaua 301 |GCU--AGg| CCA------- -|-------- ---------- ---------| -----(---- 361 ---------) -|-------- -------|-- -------(-- ---------- ---------- 421 -------)-- ---------- ---------- ---------- ---------- -----(---- 481 )---|----- --(-----)- ---------- ---------- ---------- -(------)- 541 ---------- ---------- ---- ---------- |-----AACC 841 UAA(ACCA)U UU-------- ---------- ---------- ---------- --------ac 901 ------(--- --)------- |cau-ccAA- -GUAU-A(-G GCGA)UAGAA -Aaga----- 961 -------<-- --cacca--- ---------- ---------- ---------- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- --->------ 1201 ---------- ---------- ---------- ---------< ---------- ---------- 1261 ---------- ---------- ---------> (------)-- ---------- ---|-(---) 1321 -------(-- -----)---- ---------- ---------- ---------- --<------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- >--------- ------(--- ---------- 1561 -------)-- ---------- ---------- -(-------) ---------- ---------- 1621 ---------- --GGCACAAU AGUA-AA--- ---AGUACC( -GCAA-)GGG ---AAC-GC- 1681 UGaaaaagaa augaaacaac ucgua----- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- -----aaa-G C-AAAA CCAAAG---- --------<- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------> (--acuaacc 2041 --)------- -----CUU-G UACCUU(UU- GCAUU)AUGA |UCU-AGUUA GAccc-cac- 2101 cgggcaaaa- ---------- -------(-- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- -)-------- ---------- 2521 ----(----- )-----<--- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ugaa->---- --(------) ---------- ---------- -uuuaagucc 2701 aac-ccCCCG AA-ACUAA-G UG-AGCUACU UCG-AAA-CA GCCU------ ---------- 2761 -(-------- ---------- ---------- ---------- -----auga) ---------- 2821 -GGGCAAA-C CC-UUCUCU( GUGGCAA-A) AGAG-UGGGA --AGAUUUC- CAAGUAG-AG 2881 GC(G-AUAA) ACC-UAAC-G A-GCUUAGUG AUAGCU-GGU UAUUC--GAG AA-AUG-AUU 2941 (-UUUA)GUU CA-GC-CCCU CGGC<----- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ------->-- ---|------ 3061 -|------|- ---------- ---------- --------(- --------)< cuccaaaccc 3121 uaac-----a acauaaaacc aau-gug--- ---------- ---------- ---------- 3181 ----a----- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---->----- ---------- 3301 ---------- ---------- ----|----- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- -----gCCAG -AGAG-AGUU AUUCA--AA- GG-GG(-GUA 3481 CAG)CCCCUU UG-AA----- -aAAGG(ACA -CAA)CCU-u cuaagac-ag -ga-UAA--- 3541 --agacuaua uuaacuc-a- aggaucag-- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ------cugc c<-------- ---------- ---------- 3721 ---------- ---------- ---------- ---------- -->CAAGU-G GAC(CUAAAA 3781 GC-A)-GUCA -CCU-|-(-- AA)-|AAAAG C(--GUUAAA )GC|-UUAa- gcag--<--- 3841 --cacuaaac caaccuauac uaauaaauuu aa-------- ---------- ---------- 3901 ->-------- -------|-- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- ---------- 4021 ---------- ---------- ---------- ---------- ---------- ---------- 4081 -------|cc ucau--ucc| a--c-ca|-- ---------- ---------- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- ---------- ---------- ---------- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- -----ucacu aUCGA-AU|- UA-UUCUAU- ---------- 4501 ---------- ---------- (augc---)< ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ------->-- ---------- ---------| -AUAGAAGAA UAAAUGC-UA 4681 GA|AUUAGUA -ACAA-GAa- ggc------- (-cauuaa-- ---------- ---------- 4741 ---------- -----)---- --gcc-|uuc ucuaacuGCA UAA--gugua c|----auca 4801 gauu----ag ---------- ----(--auu aa)c-c|--a cugaua---- ---------- 4861 ---auuaa-- -cga------ ---------- -------(-- ---------- ------)<-- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 >--------- ---------- ---------- ----(----- ---------- ---------- 5041 ---------- ---------- ----)----- |-----|--- ---------- |--<------ 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ---------- ---------- 5221 ---------- ---------- ---------- ---------- ---------- ---------- 5281 ---------- ---------- ---------- ---------- ---------- ---------- 5341 ---------- ---------- ---------- ---------- ---------- ---------- 5401 ---------- ---------- ------->-- ---------- ---------- ---------- 5461 -----(---- ------)--- ---|------ --------|- ---------- -(-----)-- 5521 |--------- ---------- ---------- -----(---- )--------- ---------- 5581 --<------- ---------- ---------- ---------- ---------- ---------- 5641 ---------- ---------- ------->-- ---------- ---------- ---<------ 5701 ---------- --cuuca--a agagaauacu --augacaua --aaa---ca agaaaagcac 5761 acacgcccac a--------- ---------- ---------- ---------- ---------- 5821 ---------- ---------- ---------- ---------- ---------- ---------- 5881 ---------- ---------- ---------- ---------- ---------- ---------- 5941 ---------- ---------- ---------- ---------- ---------- ---------- 6001 ---------- ---------- ---------- ---------- ---------- ---------- 6061 ---------- ---------- ---------- ---------- ---------- ---------- 6121 ---------- ---------- ---------- ---------- ---------- ---------- 6181 ---------- ---------- ---------- ---------- ---------- ---------- 6241 ---------- ---------- ---------- ---------- ---------- ---------- 6301 ---------- ---------- ---------- ---------- ---------- ---------- 6361 ---------- ---------- ---------- ---------- ---------- ---------- 6421 ---------- ---------- ------>--- ---------- ---------- --ucg----- 6481 -u-UAAUCC- -(AACACA)G G|AAUGC--- ----(aac-c ------)--- ----acgaa| 6541 |---AGAU-U A--AAAGAAA -GAAA-AGGA ACUCGGCAAA ---------- ---------- 6601 ---------- ---------- ---------- ---------- ---------- ---------- 6661 ---------- ---------- ---------- ---------- ---------- ---------- 6721 ---------- ---------- ---------- ---------- ---------- ---------- 6781 ------(--- )-------cu aUAAGCCC|C GC---CUG-U UU(ACCAA)A AA-CAUC-GC 6841 CUCCCG|C-- ---------- ---------- (caacaacag aa----)--- ---------- 6901 ------GUA- UUG-GAGGUC CCGCCU<--- ---------- ---------- ---------- 6961 ---------- ---------- -------->G CC-CA-GU|G AC-------- ---------- 7021 ---------- --(------- ---------- ---------- ---------- ---------- 7081 ---------- ---------- ---------- aag)------ ---------- ---------| 7141 ---AUUU-AA C-|GG-C|-C -GCGGU-(AU -CCUG)ACCG UG|C(AAA)- GG-UAGCGAA 7201 AUC-AC-U-U |GUCUUU(-U AAAU-)GAAG AC|CU-GUAU GAAUGGCACC A-CGAGGGCU 7261 UA-------- ---------- -------ACU GUCUCCUCUU UCCA-AU-CA ----GUAAAA 7321 UU|G|AUCUG UC-CG(U-GC AGAAG)CGGA CUU----AAC UACAUUAGAC GAGAAG-ACC 7381 CUGUGG-|-A GCUUC--AGA CA|--c-aaa gcc--aa--| <--------- ---------- 7441 ---------- ---------- --->------ ---------- ---------- ---------- 7501 ---------- ---------- ---------- --<---cuac aaauaaacac uuagauaaua 7561 aauugau-a- aaac--cagu agccuaauac u--------- ---------- ---------- 7621 ---------- ---------- ---------> --(------- -)-------- ---------- 7681 ---------- -------|-- ---------- ---------- ---------- ---------- 7741 -----(---- ----)----- ---------- ---------- ---------- --------<- 7801 ---------- ---------- ---------- ---------- ---------- ---------- 7861 ---------- ---------- ---------- ---------- ---------- ---------- 7921 ---------- ---------- ---------- ---------- ---------- ---------- 7981 ---------- ---------- ---------- ---------- ---------- ---------- 8041 ---------- ---------- ---------- ---------- ---------- ---------- 8101 ---------- ---------- ----->---- --ggc-c-cu -au---U-GU CUUUGGUUG( 8161 GGG)CG-AC- C|ACGGAG(- --------AA AAAACAAUC- )CUCC-AA|G |c|cg---|< 8221 ---------- ---------- ---------- ---------- ---------- ---------- 8281 ---------- ---------- ---------- ---------- ---------- -------auu 8341 gguaccaccu guacua---- ---------- ---------- ---------- ->-------- 8401 ---------- ---------- ---------- ---------- ---------- ---------- 8461 ---------- ---------- ---------- ---------- ---------- ---------- 8521 ---------- ---------- ---------- ---------- ---------- ---------- 8581 ---------- ---------- ---------- ---------- ---------- ---------- 8641 ---------- ---------- ---------- ---------- ---------- ---------- 8701 ---------- ---------- ---------- ---------- --|------- ---------- 8761 --------aa acaaa-ggg( -uaacac--- )cccaa-agu aauaaaaauu uu-------- 8821 ---------- ---------- ---------- ---------- ---------- --------au 8881 c|---ggaca UGACC-cagg ---------- ---------- ---(------ ---------- 8941 ---------- ---------- ---------- ---------- -----gacua aa)--|---C 9001 CUGAUCAAC- |GAA-CCAAG UUACCC|CAG G|GAUAACAG |C-GCA-A-U CCUUUCCAAG 9061 AG(U--CCAA )AUCGACGAA --AGGGUUUA CG-ACCUCGA UGUU|GG--A U|C|AGGAC| 9121 AC-CC-CAAU GG-UG(--AA -GC)CGCUAU UAAA-GGU|U UGUU(UGUUC )AACAA-UUA 9181 A--AGUCCU- --ACGUGAUC UGAGUUCAGA CC|GG-A(GA AA)UCCAGGU CAGUUUCUAU 9241 CU|AUG---- --|-|<---- ---------- ---------- ---------- ----auguu- 9301 >--------- ---------- --A-AUU-CU CC--(CAGU- AC(-GAAA)G GACC-)GGAG 9361 A--AC-- ugagcca-au gc-------- 9421 -|-------- (-----) 9541 ---------- ---------- gcac-gcuca ucu------- ---------- -------uca 9601 ---------- ---accugau (gaaaac--a acuaa)a-ac -ag-auaaag a--------- 9661 ---------- ---------| ------(--- )--------- -------|cc 9961 cg-(uaaaca a--)-cgggc aau~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10021 ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~~~ 10141 ~~~~~~~~~~ ~~~~~~~~~~ ~)~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10201 ~~~~~~~~~~ ~|~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10321 ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ||||| // LOCUS (14)-Dipno 10775 bp RNA RNA 09-JAN-1999 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 10775) Corresponding GenBank entry: DIVIDER BASE COUNT 0 a 0 c 0 g 0 t 10775 others ORIGIN 1 |......... .......... .......... .......... .......... .......... 61 .......... .......... .......... .......... .......... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......... .......... .......... .......... 241 .......... .......... .......... .......... .......... .......... 301 .......... .......... .......... .......... .......... .......... 361 .......... .......... .......... .......... .......... .......... 421 .......... .......... .......... .......... .......... .......... 481 .......... .......... .......... .......... .......... .......... 541 .......... .......... .......... .......... .......... .......... 601 .......... .......... .......... .......... .......... .......... 661 .......... .......... .......... .......... .......... .......... 721 .......... .......... .......... .......... .......... .......... 781 .......... .......... .......... .......... .......... .......... 841 .......... .......... .......... .......... .......... .......... 901 .......... .......... .......... .......... .......... .......... 961 .......... .......... .......... .......... .......... .......... 1021 .......... .......... .......... .......... .......... .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .......... .......... .......... .......... .......... 1201 .......... .......... .......... .......... .......... .......... 1261 .......... .......... .......... .......... .......... .......... 1321 .......... .......... .......... .......... .......... .......... 1381 .......... .......... .......... .......... .......... .......... 1441 .......... .......... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... .......... .......... .......... .......... .......... 1621 .......... .......... .......... .......... .......... .......... 1681 .......... .......... .......... .......... .......... .......... 1741 .......... .......... .......... .......... .......... .......... 1801 .......... .......... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .......... .......... 1921 .......... .......... .......... .......... .......... .......... 1981 .......... .......... .......... .......... .......... .......... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... .......... .......... .......... .......... .......... 2161 .......... .......... .......... .......... .......... .......... 2221 .......... .......... .......... .......... .......... .......... 2281 .......... .......... .......... .......... .......... .......... 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... .......... 2701 .......... .......... .......... .......... .......... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... .......... 2881 .......... .......... .......... .......... .......... .......... 2941 .......... .......... .......... .......... .......... .......... 3001 .......... .......... .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .......... .......... 3181 .......... .......... .......... .......... .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .......... .......... .......... 3361 .......... .......... .......... .......... .......... .......... 3421 .......... .......... .......... .......... .......... .......... 3481 .......... .......... .......... .......... .......... .......... 3541 .......... .......... .......... .......... .......... .......... 3601 .......... .......... .......... .......... .......... .......... 3661 .......... .......... .......... .......... .......... .......... 3721 .......... .......... .......... .......... .......... .......... 3781 .....-.... .......... .......... .......... .......... .......... 3841 .......... .......... .......... .......... .......... .......... 3901 .......... .......... .......... .......... .......... .......... 3961 .......... .......... .......... .......... .......... .......... 4021 .......... .......... .......... .......... .......... .......... 4081 .......... .......... .......... .......... .......... .......... 4141 .......... .......... .......... .......... .......... .......... 4201 .......... .......... .......... .......... .......... .......... 4261 .......... .......... .......... .......... .......... .......... 4321 .......... .......... .......... .......... .......... .......... 4381 .......... .......... .......... .......... .......... .......... 4441 .......... .......... .......... .......... .......... .......... 4501 .......... .......... .......... .......... .......... .......... 4561 .......... .......... .......... .......... .......... .......... 4621 .......... .......... .......... .......... .......... .......... 4681 .......... .......... .......... .......... .......... .......... 4741 .......... .......... .......... .......... .......... .......... 4801 .......... .......... .......... ..)....... .......... .......... 4861 .......... .......... .......... .......... .......... .......... 4921 .......... .......... .......... .......... .......... .......... 4981 .......... .......... .......... .......... .......... .......... 5041 .......... .......... .......... .......... .......... .......... 5101 .......... .......... .......... .......... .......... .......... 5161 .......... .......... .......... .......... .......... .......... 5221 .......... .......... .......... .......... .......... .......... 5281 .......... .......... .......... .......... .......... .......... 5341 .......... .......... .......... .......... .......... .......... 5401 .......... .......... .......... .......... .......... .......... 5461 .......... .......... .......... .......... .......... .......... 5521 .......... .......... .......... .......... .......... .......... 5581 .......... .......... .......... .......... .......... .......... 5641 .......... .......... .......... .......... .......... .......... 5701 .......... .......... .......... .......... .......... .......... 5761 .......... .......... .......... .......... .......... .......... 5821 .......... .......... .......... .......... .......... .......... 5881 .......... .......... .......... .......... .......... .......... 5941 .......... .......... .......... .......... .......... .......... 6001 .......... .......... .......... .......... .......... .......... 6061 .......... .......... .......... .......... .......... .......... 6121 .......... .......... .......... .......... .......... .......... 6181 .......... .......... .......... .......... .......... .......... 6241 .......... .......... .......... .......... .......... .......... 6301 .......... .......... .......... .......... .......... .......... 6361 .......... .......... .......... .......... .......... .......... 6421 .......... .......... .......... .......... .......... .......... 6481 .......... .......... .......... .......... .......... .......... 6541 .......... .......... .......... .......... .......... .......... 6601 .......... .......... .......... .......... .......... .......... 6661 .......... .......... .......... .......... .......... .......... 6721 .......... .......... .......... .......... .......... .......... 6781 .......... .......... .......... .......... .......... .......... 6841 .......... .......... .......... .......... .......... .......... 6901 .......... .......... .......... .......... .......... .......... 6961 .......... .......... .......... .......... .......... .......... 7021 .......... .......... .......... .......... .......... .......... 7081 .......... .......... .......... .......... .......... .......... 7141 .......... .......... .......... .......... .......... .......... 7201 .......... .......... .......... .......... .......... .......... 7261 .......... .......... .......... .......... .......... .......... 7321 .......... .......... .......... .......... .......... .......... 7381 .......... .......... .......... .......... .......... .......... 7441 .......... .......... .......... .......... .......... .......... 7501 .......... .......... .......... .......... .......... .......... 7561 .......... .......... .......... .......... .......... .......... 7621 .......... .......... .......... .......... .......... .......... 7681 .......... .......... .......... .......... .......... .......... 7741 .......... .......... .......... .......... .......... .......... 7801 .......... .......... .......... .......... .......... .......... 7861 .......... .......... .......... .......... .......... .......... 7921 .......... .......... .......... .......... .......... .......... 7981 .......... .......... .......... .......... .......... .......... 8041 .......... .......... .......... .......... .......... .......... 8101 .......... .......... .......... .......... .......... .......... 8161 .......... .......... .......... .......... .......... .......... 8221 .......... .......... .......... .......... .......... .......... 8281 .......... .......... .......... .......... .......... .......... 8341 .......... .......... .......... .......... .......... .......... 8401 .......... .......... .......... .......... .......... .......... 8461 .......... .......... .......... .......... .......... .......... 8521 .......... .......... .......... .......... .......... .......... 8581 .......... .......... .......... .......... .......... .......... 8641 .......... .......... .......... .......... .......... .......... 8701 .......... .......... .......... .......... .......... .......... 8761 .......... .......... .......... .......... .......... .......... 8821 .......... .......... .......... .......... .......... .......... 8881 .......... .......... .......... .......... .......... .......... 8941 .......... .......... .......... .......... .......... .......... 9001 .......... .......... .......... .......... .......... .......... 9061 .......... .......... .......... .......... .......... .......... 9121 .......... .......... .......... .......... .......... .......... 9181 .......... .......... .......... .......... .......... .......... 9241 .......... .......... .......... .......... .......... .......... 9301 .......... .......... .......... .......... .......... .......... 9361 .......... .......... .......... .......... .......... .......... 9421 .......... .......... .......... .......... .......... .......... 9481 .......... .......... .......... .......... .......... .......... 9541 .......... .......... .......... .......... .......... .......... 9601 .......... .......... .......... .......... .......... .......... 9661 .......... .......... .......... .......... .......... .......... 9721 .......... .......... .......... .......... .......... .......... 9781 .......... .......... .......... .......... .......... .......... 9841 .......... .......... .......... .......... .......... .......... 9901 .......... .......... .......... .......... .......... .......... 9961 .......... .......... .......... .......... .......... .......... 10021 .......... .......... .......... .......... .......... .......... 10081 .......... .......... .......... .......... .......... .......... 10141 .......... .......... .......... .......... .......... .......... 10201 .......... .......... .......... .......... .......... .......... 10261 .......... .......... .......... .......... .......... .......... 10321 .......... .......... .......... .......... .......... .......... 10381 .......... .......... .......... .......... .......... .......... 10441 .......... .......... .......... .......... .......... .......... 10501 .......... .......... .......... .......... .......... .......... 10561 .......... .......... .......... .......... .......... .......... 10621 .......... .......... .......... .......... .......... .......... 10681 .......... .......... .......... .......... .......... .......... 10741 .......... .......... .......... ||||| // LOCUS mt.N.for.1 10775 bp RNA RNA 11-JAN-191 DEFINITION mitochondrion Neoceratodus foresteri. ACCESSION No information KEYWORDS No information. SOURCE mitochondrion Neoceratodus foresteri. ORGANISM mitochondrion Neoceratodus foresteri. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 10775) Corresponding GenBank entry: Z21927 ID MTNF12SRB standard; DNA; ORG; 2730 BP. XX AC Z21927; XX DT 14-JUN-1993 (Rel. 36, Created) DT 14-JUN-1993 (Rel. 36, Last updated, Version 3) XX DE N.forsteri mitochondrion 12S and 16S rRNA genes, and tRNA-Val and DE -Leu genes. XX KW 12S ribosomal RNA; 16S ribosomal RNA; transfer RNA-Leu; KW transfer RNA-Val. XX OS Neoceratodus foresteri OC Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Osteichthyes; OC Sarcopterygii; Lepidosireniformes; Ceratodidae. XX OG Mitochondrion XX RN [2] RP 1-2730 RA Hedges S.; RT ; RL Submitted (05-MAR-1993) on tape to the EMBL Data Library by: RL Hedges S., Pennsylvania State University, Biology, 208 Mueller Lab, RL University Park, PA, USA, 16802 XX RN [3] RP 1-2730 RA Hedges S., Hass C.A., Maxson L.R.; RT "Relations of fish and tetrapods"; RL Nature 363:501-502(1993). XX FH Key Location/Qualifiers FH FT source 1..2730 FT /organism="Neoceratodus foresteri" FT /mitochondrion FT rRNA 1..951 FT /product="12S rRNA" FT /citation=[1] FT tRNA 952..1022 FT /product="tRNA-Val" FT /citation=[1] FT rRNA 1023..2701 FT /product="16S rRNA" FT /citation=[1] FT tRNA 2702..2730 FT /product="tRNA-Leu" FT /citation=[1] XX SQ Sequence 2730 BP; 989 A; 633 C; 530 G; 574 T; 4 other; BASE COUNT 634 a 372 c 311 g 360 t 9098 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~G C--------- ----uaaacu 301 |GCU--AGC| CUA------- -|-------- ---------- ---------| -----(---- 361 ---------) -|-------- -------|-- -------(-- ---------- ---------- 421 -------)-- ---------- ---------- ---------- ---------- -----(---- 481 )---|----- --(-----)- ---------- ---------- ---------- -(------)- 541 ---------- ---------- ---- ---------- |-----AAAA 841 UAA(ACCA)U UCA------- ---------- ---------- ---------- --------cu 901 ------(--- --)------- |aau-caGA- -GUAU-G(-G GCGA)CAGAA -Aacga---- 961 -------<-- --accua--- ---------- ---------- ---------- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- --->------ 1201 ---------- ---------- ---------- ---------< ---------- ---------- 1261 ---------- ---------- ---------> (------)-- ---------- ---|-(---) 1321 -------(-- -----)---- ---------- ---------- ---------- --<------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- >--------- ------(--- ---------- 1561 -------)-- ---------- ---------- -(-------) ---------- ---------- 1621 ---------- U-AGCGCCAU AGAA-AA--- ---AGUACC( -GCAA-)GG- ---AAA-GC- 1681 UGaaaaagaa augaaaaacc aauu------ ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- -----uaa-G C-CAAA GUAGAG---- --------<- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------> (--auauaaa 2041 --)------- -----CUC-G UACCUU(UU- GCAUC)AUGG |UCU-AGCAA GUcaa--cc- 2101 ugggcaaag- ---------- -------(-- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- -)-------- ---------- 2521 ----(----- )-----<--- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- agug->---- --(------) ---------- ---------- -cuuaagucc 2701 aac-ucCCCG AA-ACUAG-G CG-AGCUACU UCG-AGA-CA GCUU------ ---------- 2761 -(-------- ---------- ---------- ---------- --aaauaua) ---------- 2821 -GAGCCAA-C CC-GUCCCU( GUGGCAA-A) AGGUGUGGGA --AGAUCUC- CAAGUAG-GG 2881 GU(G-ACAG) ACC-UAAC-G A-GCCUAGUU AUAGCU-GGU UGCUC--GGG AA-AUG-AAU 2941 (-AUUA)GUU CA-AC-UUUA AAAC<----- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ------->-- ---|------ 3061 -|------|- ---------- ---------- --------(- --------)< ccuccacuua 3121 cuaa-----a caaguaacaa cuaacca--- ---------- ---------- ---------- 3181 ----ucaaac uaaguaguaa g--------- ---------- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---->----- ---------- 3301 ---------- ---------- ----|----- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ------UU-U -UAAA-AUAU AUUUA--AA- AG-AG(-GGA 3481 CAG)CUCUUU UA-AA----- -cGAGG(ACA -CAA)CCU-u aaaaa-u-ug -gg-UAA--- 3541 --agaucaua cuaaaag-a- agaauc---- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ------gcgc u<-------- ---------- ---------- 3721 ---------- ---------- ---------- ---------- -->AAAGU-G GGC(CUAAAA 3781 GC-A)-GCCA -CCGU|A(A- AA)-|GAAAG C(--GUUACA )GC|-UCAa- guac--<--- 3841 --auaacuuc uacaaauaau gauacucaa- ---------- ---------- ---------- 3901 ->-------- -------|-- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- ---------- 4021 ---------- ---------- ---------- ---------- ---------- ---------- 4081 -------|uc ucaa--ccc| g--c-aa|-- ---------- ---------- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- ---------- ---------- ---------- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- -----aaacu aCUGA-GC|- UA-ACUUAUA ---------- 4501 ---------- ---------- (aaaa---)< ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ------->-- ---------- ---------| UAUAAGUGCA AUAAUGC-UA 4681 GA|AUUAGUA -ACAA-GAA- g--------- (-aagcc--- ---------- ---------- 4741 ---------- -----)---- ----c-|uuc u-ccga-GCA UAG--gugua a|----auca 4801 aaac----gg ---------- ----(--acu ac)c-c|--a uugaua---- ---------- 4861 ---auuaa-- -cga------ ---------- -------(-- ---------- ------)<-- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 >--------- ---------- ---------- ----(----- ---------- ---------- 5041 ---------- ---------- ----)----- |-----|--- ---------- |--<------ 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ---------- ---------- 5221 ---------- ---------- ---------- ---------- ---------- ---------- 5281 ---------- ---------- ---------- ---------- ---------- ---------- 5341 ---------- ---------- ---------- ---------- ---------- ---------- 5401 ---------- ---------- ------->-- ---------- ---------- ---------- 5461 -----(---- ------)--- ---|------ --------|- ---------- -(-----)-- 5521 |--------- ---------- ---------- -----(---- )--------- ---------- 5581 --<------- ---------- ---------- ---------- ---------- ---------- 5641 ---------- ---------- ------->-- ---------- ---------- ---<------ 5701 ---------- ccccacgaag gaaguauaac gacucauaa- ----aacaca agaaaaccaa 5761 aucaaaacaa ---------- ---------- ---------- ---------- ---------- 5821 ---------- ---------- ---------- ---------- ---------- ---------- 5881 ---------- ---------- ---------- ---------- ---------- ---------- 5941 ---------- ---------- ---------- ---------- ---------- ---------- 6001 ---------- ---------- ---------- ---------- ---------- ---------- 6061 ---------- ---------- ---------- ---------- ---------- ---------- 6121 ---------- ---------- ---------- ---------- ---------- ---------- 6181 ---------- ---------- ---------- ---------- ---------- ---------- 6241 ---------- ---------- ---------- ---------- ---------- ---------- 6301 ---------- ---------- ---------- ---------- ---------- ---------- 6361 ---------- ---------- ---------- ---------- ---------- ---------- 6421 ---------- ---------- ------>--- ---------- ---------- --ucg--|-- 6481 -u-UAACAC- -(CACACA)G U|AAUGC--- ----(aac-c a-----)--- ----aggaa| 6541 |---AGGU-U A--AACAAUG -AGGA-AGGA ACUCGGCAAA ---------- ---------- 6601 ---------- ---------- ---------- ---------- ---------- ---------- 6661 ---------- ---------- ---------- ---------- ---------- ---------- 6721 ---------- ---------- ---------- ---------- ---------- ---------- 6781 ------(--- )--------c aCAAACCC|C CC---CUG-U UU(ACCAA)A AA-CAUC-GC 6841 CUCCUG|C-- ---------- ---------- (aaauaucag ac----)--- ---------- 6901 ------GUA- UUA-GAGGUC CCGCCU<--- ---------- ---------- ---------- 6961 ---------- ---------- -------->G CC-CU-GU|G AC-------- ---------- 7021 ---------- --(------- ---------- ---------- ---------- ---------- 7081 ---------- ---------- ---------a aua)------ ---------- ---------| 7141 ---GUUC-AA C-|GG-C|-C -GCGGU-(AU -UUUG)ACCG UG|C(GAA)- GG-UAGnGUA 7201 AUC-AC-U-U |GUCUUU(-U AAAU-)AAAG AC|CU-GUAU GAAUGGCAAC A-CGAGGGUU 7261 CA-------- ---------- -------ACU GUCUCCCCCA UUUU-AC-CA ----GUGAAA 7321 UU|G|AUCUG CC-CG(U-GC AGAAG)CGGG CAU----AAA ACCAUAAGAC GAGAAG-ACC 7381 CUAUGG-|-A GCUUA--AAA UU|--acuaa ugc--ua--| <--------- ---------- 7441 ---------- ---------- --->------ ---------- ---------- ---------- 7501 ---------- ---------- ---------- --<--acugc -guaagaaag cuaua-cugc 7561 uu-uuaaagc uaaaaacaua -gcaaaca-- ---------- ---------- ---------- 7621 ---------- ---------- ---------> --(------- -)-------- ---------- 7681 ---------- -------|-- ---------- ---------- ---------- ---------- 7741 -----(---- ----)----- ---------- ---------- ---------- --------<- 7801 ---------- ---------- ---------- ---------- ---------- ---------- 7861 ---------- ---------- ---------- ---------- ---------- ---------- 7921 ---------- ---------- ---------- ---------- ---------- ---------- 7981 ---------- ---------- ---------- ---------- ---------- ---------- 8041 ---------- ---------- ---------- ---------- ---------- ---------- 8101 ---------- ---------- ----->---- --uag-c-au -ua---A-CU UUUUGGUUG( 8161 GGG)CG-AC- C|GCGGAG(- --------AA AAAAAAAUC- )CUCC-GC|A |a|cu---|< 8221 ---------- ---------- ---------- ---------- ---------- ---------- 8281 ---------- ---------- ---------- ---------- --aaacaggg u-auu--acc 8341 cu-------- ---------- ---------- ---------- ---------- ->-------- 8401 ---------- ---------- ---------- ---------- ---------- ---------- 8461 ---------- ---------- ---------- ---------- ---------- ---------- 8521 ---------- ---------- ---------- ---------- ---------- ---------- 8581 ---------- ---------- ---------- ---------- ---------- ---------- 8641 ---------- ---------- ---------- ---------- ---------- ---------- 8701 ---------- ---------- ---------- ---------- --|------- ---------- 8761 --------ga aauaa-ggg( -cgacag--- )cccaa-aau aacagaacau cu-------- 8821 ---------- ---------- ---------- ---------- ---------- ---------g 8881 a|---cauaa AGAUC-caga ---------- ---------- ---(------ ---------- 8941 ---------- ---------- ---------- ---------- --------ua uu)--|---U 9001 CUGAUCAAC- |GAA-CCAAG UUACCC|UAG G|GAUAACAG |C-GCA-A-U CCUUUCUAAG 9061 AG(U--CCAU )AUCGACGAA --AGGGCUUA CG-ACCUCGA UGUU|GG--A U|C|AGGAC| 9121 AU-CC-UAGU GG-UG(--CA -GC)CGCUAC UAAG-GGU|U UGUU(UGUUC )AACAA-UUA 9181 A-uAGUCCU- --ACGUGAUC UGAGUUCAGA CC|GG-A(GC AA)UCCAGGU CAGUUUCUAU 9241 CU|AUG---- --|-|<---- ---------- ---------- ---------- -uucaaacc- 9301 >--------- ---------- --U-AUn-UU UC--(UAGU- AC(-GAAA)G GACC-)GAAA 9361 A--GU-- gaggcca-au gc-------- 9421 -|-------- (-----) 9541 ---------- ---------- cuau-gccuc acc------- ---------- -------cac 9601 ---------- ---acccaau (gaaauu--a acuaa)a-au -aa-cauaau g--------- 9661 ---------- ---------| ------(--- )--------- -------|ga 9961 ccc(aagaca ---)agguua a~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10021 ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~~~ 10141 ~~~~~~~~~~ ~~~~~~~~~~ ~)~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10201 ~~~~~~~~~~ ~|~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10321 ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ||||| // LOCUS mt.N.for.2 10775 bp RNA RNA 11-JAN-191 DEFINITION mitochondrion Neoceratodus foresteri. ACCESSION No information KEYWORDS No information. SOURCE mitochondrion Neoceratodus foresteri. ORGANISM mitochondrion Neoceratodus foresteri. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 10775) Corresponding GenBank entry: Z21926 ID MTNF12SRA standard; DNA; ORG; 2730 BP. XX AC Z21926; XX DT 14-JUN-1993 (Rel. 36, Created) DT 14-JUN-1993 (Rel. 36, Last updated, Version 3) XX DE N.forsteri mitochondrion 12S and 16S rRNA genes, and tRNA-Val and DE -Leu genes. XX KW 12S ribosomal RNA; 16S ribosomal RNA; transfer RNA-Leu; KW transfer RNA-Val. XX OS Neoceratodus foresteri OC Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Osteichthyes; OC Sarcopterygii; Lepidosireniformes; Ceratodidae. XX OG Mitochondrion XX RN [2] RP 1-2730 RA Hedges S.; RT ; RL Submitted (05-MAR-1993) on tape to the EMBL Data Library by: RL Hedges S., Pennsylvania State University, Biology, 208 Mueller Lab, RL University Park, PA, USA, 16802 XX RN [3] RP 1-2730 RA Hedges S., Hass C.A., Maxson L.R.; RT "Relations of fish and tetrapods"; RL Nature 363:501-502(1993). XX FH Key Location/Qualifiers FH FT source 1..2730 FT /organism="Neoceratodus foresteri" FT /mitochondrion FT rRNA 1..951 FT /product="12S rRNA" FT /citation=[1] FT tRNA 952..1022 FT /product="tRNA-Val" FT /citation=[1] FT rRNA 1023..2701 FT /product="16S rRNA" FT /citation=[1] FT tRNA 2702..2730 FT /product="tRNA-Leu" FT /citation=[1] XX SQ Sequence 2730 BP; 989 A; 633 C; 530 G; 574 T; 4 other; BASE COUNT 634 a 372 c 311 g 360 t 9098 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~G C--------- ----uaaacu 301 |GCU--AGC| CUA------- -|-------- ---------- ---------| -----(---- 361 ---------) -|-------- -------|-- -------(-- ---------- ---------- 421 -------)-- ---------- ---------- ---------- ---------- -----(---- 481 )---|----- --(-----)- ---------- ---------- ---------- -(------)- 541 ---------- ---------- ---- ---------- |-----AAAA 841 UAA(ACCA)U UCA------- ---------- ---------- ---------- --------cu 901 ------(--- --)------- |aau-caGA- -GUAU-G(-G GCGA)CAGAA -Aacga---- 961 -------<-- --accua--- ---------- ---------- ---------- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- --->------ 1201 ---------- ---------- ---------- ---------< ---------- ---------- 1261 ---------- ---------- ---------> (------)-- ---------- ---|-(---) 1321 -------(-- -----)---- ---------- ---------- ---------- --<------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- >--------- ------(--- ---------- 1561 -------)-- ---------- ---------- -(-------) ---------- ---------- 1621 ---------- U-AGCGCCAU AGAA-AA--- ---AGUACC( -GCAA-)GG- ---AAA-GC- 1681 UGaaaaagaa augaaaaacc aauu------ ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- -----uaa-G C-CAAA GUAGAG---- --------<- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------> (--auauaaa 2041 --)------- -----CUC-G UACCUU(UU- GCAUC)AUGG |UCU-AGCAA GUcaa--cc- 2101 ugggcaaag- ---------- -------(-- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- -)-------- ---------- 2521 ----(----- )-----<--- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- agug->---- --(------) ---------- ---------- -cuuaagucc 2701 aac-ucCCCG AA-ACUAG-G CG-AGCUACU UCG-AGA-CA GCUU------ ---------- 2761 -(-------- ---------- ---------- ---------- --aaauaua) ---------- 2821 -GAGCCAA-C CC-GUCCCU( GUGGCAA-A) AGGUGUGGGA --AGAUCUC- CAAGUAG-GG 2881 GU(G-ACAG) ACC-UAAC-G A-GCCUAGUU AUAGCU-GGU UGCUC--GGG AA-AUG-AAU 2941 (-AUUA)GUU CA-AC-UUUA AAAC<----- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ------->-- ---|------ 3061 -|------|- ---------- ---------- --------(- --------)< ccuccacuua 3121 cuaa-----a caaguaacaa cuaacca--- ---------- ---------- ---------- 3181 ----ucaaac uaaguaguaa g--------- ---------- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---->----- ---------- 3301 ---------- ---------- ----|----- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ------UU-U -UAAA-AUAU AUUUA--AA- AG-AG(-GGA 3481 CAG)CUCUUU UA-AA----- -cGAGG(ACA -CAA)CCU-u aaaaa-u-ug -gg-UAA--- 3541 --agaucaua cuaaaag-a- agaauc---- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ------gcgc u<-------- ---------- ---------- 3721 ---------- ---------- ---------- ---------- -->AAAGU-G GGC(CUAAAA 3781 GC-A)-GCCA -CCGU|A(A- AA)-|GAAAG C(--GUUACA )GC|-UCAa- guac--<--- 3841 --auaacuuc uacaaauaau gauacucaa- ---------- ---------- ---------- 3901 ->-------- -------|-- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- ---------- 4021 ---------- ---------- ---------- ---------- ---------- ---------- 4081 -------|uc ucaa--ccc| g--c-aa|-- ---------- ---------- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- ---------- ---------- ---------- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- -----aaacu aCUGA-GC|- UA-ACUUAUA ---------- 4501 ---------- ---------- (aaaa---)< ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ------->-- ---------- ---------| UAUAAGUGCA AUAAUGC-UA 4681 GA|AUUAGUA -ACAA-GAA- g--------- (-aagcc--- ---------- ---------- 4741 ---------- -----)---- ----c-|uuc u-ccga-GCA UAG--gugua a|----auca 4801 aaac----gg ---------- ----(--acu ac)c-c|--a uugaua---- ---------- 4861 ---auuaa-- -cga------ ---------- -------(-- ---------- ------)<-- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 >--------- ---------- ---------- ----(----- ---------- ---------- 5041 ---------- ---------- ----)----- |-----|--- ---------- |--<------ 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ---------- ---------- 5221 ---------- ---------- ---------- ---------- ---------- ---------- 5281 ---------- ---------- ---------- ---------- ---------- ---------- 5341 ---------- ---------- ---------- ---------- ---------- ---------- 5401 ---------- ---------- ------->-- ---------- ---------- ---------- 5461 -----(---- ------)--- ---|------ --------|- ---------- -(-----)-- 5521 |--------- ---------- ---------- -----(---- )--------- ---------- 5581 --<------- ---------- ---------- ---------- ---------- ---------- 5641 ---------- ---------- ------->-- ---------- ---------- ---<------ 5701 ---------- ccccacgaag gaaguauaac gacucaua-- ---aaacaca agaaaaccaa 5761 aucaaaacaa ---------- ---------- ---------- ---------- ---------- 5821 ---------- ---------- ---------- ---------- ---------- ---------- 5881 ---------- ---------- ---------- ---------- ---------- ---------- 5941 ---------- ---------- ---------- ---------- ---------- ---------- 6001 ---------- ---------- ---------- ---------- ---------- ---------- 6061 ---------- ---------- ---------- ---------- ---------- ---------- 6121 ---------- ---------- ---------- ---------- ---------- ---------- 6181 ---------- ---------- ---------- ---------- ---------- ---------- 6241 ---------- ---------- ---------- ---------- ---------- ---------- 6301 ---------- ---------- ---------- ---------- ---------- ---------- 6361 ---------- ---------- ---------- ---------- ---------- ---------- 6421 ---------- ---------- ------>--- ---------- ---------- --ucg--|-- 6481 -u-UAACAC- -(CACACA)G U|AAUGC--- ----(aac-c a-----)--- ----aggaa| 6541 |---AGGU-U A--AACAAUG -AGGA-AGGA ACUCGGCAAA ---------- ---------- 6601 ---------- ---------- ---------- ---------- ---------- ---------- 6661 ---------- ---------- ---------- ---------- ---------- ---------- 6721 ---------- ---------- ---------- ---------- ---------- ---------- 6781 ------(--- )--------c aCAAACCC|C CC---CUG-U UU(ACCAA)A AA-CAUC-GC 6841 CUCCUG|C-- ---------- ---------- (aaauaucag ac----)--- ---------- 6901 ------GUA- UUA-GAGGUC CCGCCU<--- ---------- ---------- ---------- 6961 ---------- ---------- -------->G CC-CU-GU|G AC-------- ---------- 7021 ---------- --(------- ---------- ---------- ---------- ---------- 7081 ---------- ---------- ---------a aua)------ ---------- ---------| 7141 ---GUUC-AA C-|GG-C|-C -GCGGU-(AU -UUUG)ACCG UG|C(GAA)- GG-UAGnGUA 7201 AUC-AC-U-U |GUCUUU(-U AAAU-)AAAG AC|CU-GUAU GAAUGGCAAC A-CGAGGGUU 7261 CA-------- ---------- -------ACU GUCUCCCCCA UUUU-AC-CA ----GUGAAA 7321 UU|G|AUCUG CC-CG(U-GC AGAAG)CGGG CAU----AAA ACCAUAAGAC GAGAAG-ACC 7381 CUAUGG-|-A GCUUA--AAA UU|--acuaa ugc--ua--| <--------- ---------- 7441 ---------- ---------- --->------ ---------- ---------- ---------- 7501 ---------- ---------- ---------- --<--acugc -guaagaaag cuaua-cugc 7561 uu-uuaaagc uaaaaacaua -gcaaaca-- ---------- ---------- ---------- 7621 ---------- ---------- ---------> --(------- -)-------- ---------- 7681 ---------- -------|-- ---------- ---------- ---------- ---------- 7741 -----(---- ----)----- ---------- ---------- ---------- --------<- 7801 ---------- ---------- ---------- ---------- ---------- ---------- 7861 ---------- ---------- ---------- ---------- ---------- ---------- 7921 ---------- ---------- ---------- ---------- ---------- ---------- 7981 ---------- ---------- ---------- ---------- ---------- ---------- 8041 ---------- ---------- ---------- ---------- ---------- ---------- 8101 ---------- ---------- ----->---- --uag-c-au -ua---A-CU UUUUGGUUG( 8161 GGG)CG-AC- C|GCGGAG(- --------AA AAAAAAAUC- )CUCC-GC|A |a|cu---|< 8221 ---------- ---------- ---------- ---------- ---------- ---------- 8281 ---------- ---------- ---------- ---------- --aaacaggg u-auu--acc 8341 cu-------- ---------- ---------- ---------- ---------- ->-------- 8401 ---------- ---------- ---------- ---------- ---------- ---------- 8461 ---------- ---------- ---------- ---------- ---------- ---------- 8521 ---------- ---------- ---------- ---------- ---------- ---------- 8581 ---------- ---------- ---------- ---------- ---------- ---------- 8641 ---------- ---------- ---------- ---------- ---------- ---------- 8701 ---------- ---------- ---------- ---------- --|------- ---------- 8761 --------ga aauaa-ggg( -cgacag--- )cccaa-aau aacagaacau cu-------- 8821 ---------- ---------- ---------- ---------- ---------- ---------g 8881 a|---cauaa AGAUC-caga ---------- ---------- ---(------ ---------- 8941 ---------- ---------- ---------- ---------- --------ua uu)--|---U 9001 CUGAUCAAC- |GAA-CCAAG UUACCC|UAG G|GAUAACAG |C-GCA-A-U CCUUUCUAAG 9061 AG(U--CCAU )AUCGACGAA --AGGGCUUA CG-ACCUCGA UGUU|GG--A U|C|AGGAC| 9121 AU-CC-UAGU GG-UG(--CA -GC)CGCUAC UAAG-GGU|U UGUU(UGUUC )AACAA-UUA 9181 A-uAGUCCU- --ACGUGAUC UGAGUUCAGA CC|GG-A(GC AA)UCCAGGU CAGUUUCUAU 9241 CU|AUG---- --|-|<---- ---------- ---------- ---------- -uucaaacc- 9301 >--------- ---------- --U-AUn-UU UC--(UAGU- AC(-GAAA)G GACC-)GAAA 9361 A--GU-- gaggcca-au gc-------- 9421 -|-------- (-----) 9541 ---------- ---------- cuau-gccuc acc------- ---------- -------cac 9601 ---------- ---acccaau (gaaauu--a acuaa)a-au -aa-cauaau g--------- 9661 ---------- ---------| ------(--- )--------- -------|ga 9961 ccc(aagaca ---)agguua a~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10021 ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~~~ 10141 ~~~~~~~~~~ ~~~~~~~~~~ ~)~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10201 ~~~~~~~~~~ ~|~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10321 ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ||||| // LOCUS mt.L.parad 10775 bp RNA RNA 11-JAN-191 DEFINITION Mitochondrion Lepidosiren paradoxa. ACCESSION No information KEYWORDS No information. SOURCE Mitochondrion Lepidosiren paradoxa. ORGANISM Mitochondrion Lepidosiren paradoxa. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 10775) Corresponding GenBank entry: Z48715 LOCUS MTLPTRRNA 2606 bp DNA VRT 15-MAR-1995 DEFINITION L.paradoxa mitochondrial genes for 12S rRNA, 16S rRNA, tRNA-Val and tRNA-Leu. ACCESSION Z48715 KEYWORDS 12S ribosomal RNA; 12S rRNA gene; 16S ribosomal RNA; 16S rRNA gene; tRNA-Leu; tRNA-Val. SOURCE South American lungfish. ORGANISM Mitochondrion Lepidosiren paradoxa Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Osteichthyes; Sarcopterygii; Lepidosireniformes; Lepidosirenidae. REFERENCE 1 (bases 1 to 2606) AUTHORS Hedges,S.B., Hass,C.A. and Maxson,L.R. TITLE Relations of fish and tetrapods [letter] JOURNAL Nature 363 (6429), 501-502 (1993) MEDLINE 93281180 REMARK (sites) REFERENCE 2 (bases 1 to 2606) AUTHORS Hedges,S. TITLE Direct Submission JOURNAL Submitted (14-MAR-1995) to the EMBL/GenBank/DDBJ databases. Hedges S., Pennsylvania State University, Biology, 208 Mueller Lab, University Park, PA, USA, 16802 COMMENT NCBI gi: 732849 FEATURES Location/Qualifiers source 1..2606 /organism="Lepidosiren paradoxa" /mitochondrion rRNA 1..929 /gene="12S rRNA" /citation=[1] /product="12S ribosomal RNA" tRNA 930..997 /citation=[1] /product="tRNA-Val" rRNA 998..2577 /gene="16S rRNA" /citation=[1] /product="16S ribosomal RNA" tRNA 2578..2606 /citation=[1] /product="tRNA-Leu" BASE COUNT 923 a 506 c 501 g 675 t 1 others ORIGIN BASE COUNT 578 a 291 c 295 g 415 t 9196 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~G C--------- ----aaguuu 301 |ACC--AGC| CCU------- -|-------- ---------- ---------| -----(---- 361 ---------) -|-------- -------|-- -------(-- ---------- ---------- 421 -------)-- ---------- ---------- ---------- ---------- -----(---- 481 )---|----- --(-----)- ---------- ---------- ---------- -(------)- 541 ---------- ---------- ---- ---------- |-----UUAA 841 UAA(ACCA)U UAA------- ---------- ---------- ---------- --------u- 901 ------(--- --)------- |uuc-auuA- -GUAU-C(-G GCGA)GAGAA -auaaa---- 961 -------<-- --auu----- ---------- ---------- ---------- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- --->------ 1201 ---------- ---------- ---------- ---------< ---------- ---------- 1261 ---------- ---------- ---------> (------)-- ---------- ---|-(---) 1321 -------(-- -----)---- ---------- ---------- ---------- --<------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- >--------- ------(--- ---------- 1561 -------)-- ---------- ---------- -(-------) ---------- ---------- 1621 ---------- A-GGAGCACU AAAU-GA--- ---AGUACC( -GUAA-)GGG ---AAA-GU- 1681 ugaaaaacca ugaaauaaaa u--------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- -----aaa-G C-AAAA GCAAAG---- --------<- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------> (--auuaauc 2041 --)------- -----CUU-G UACCUU(UU- GCAUC)AUGG |UCU-AGCAA GAuaa--ac- 2101 gggcaaa--- ---------- -------(-- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- -)-------- ---------- 2521 ----(----- )-----<--- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------a agaa->---- --(------) ---------- ---------- -uuuaagucu 2701 agc-acCCCG AA-ACUAA-A CG-AGCUACU UUG-GGG-CA GCC------- ---------- 2761 -(-------- ---------- ---------- ---------- ------aaa) ---------- 2821 -GAGCAAA-C CC-UUCCAU( GUGGCAA-A) AUGG-UGGGA --UGACCCC- CUAGUAG-AG 2881 GU(G-AAAA) GCC-AACCcG A-GUUUAGAG AUAGCU-GGU UACUC--GAA AA-AUG-AAU 2941 (-AUA-)GUU CA-UC-UCUG GUUU<----- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ------->-- ---|------ 3061 -|------|- ---------- ---------- --------(- --------)< uuccaaaaau 3121 cacc-----u aaaagacuuu ucgaaa---- ---------- ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---->----- ---------- 3301 ---------- ---------- ----|----- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ------AA-C -UAGG-AGAU AAUUA--AA- GG-GG(-GGA 3481 CAG)CCCCUU UA-AU----- -cAAGG(AUA -CAU)CCU-- uuaaa-g-ag -ga-UAA--- 3541 --uaaaacag aagguau--- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ------aaau u<-------- ---------- ---------- 3721 ---------- ---------- ---------- ---------- -->UUAGU-G GGC(CUAAAA 3781 GC-A)-GUCA -CCUu|-(-- -a)-|GAAAG C(--GUUAAA )GC|-UCAa- auuu--<--- 3841 --uaauuuac cauaaauuuu auaacuaa-- ---------- ---------- ---------- 3901 ->-------- -------|-- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- ---------- 4021 ---------- ---------- ---------- ---------- ---------- ---------- 4081 -------|uu agau--ucc| c--a-aa|-- ---------- ---------- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- ---------- ---------- ---------- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- -----auuuu aUCGA-GU|- AA-ACUUAUA ---------- 4501 ---------- ---------- (caau---)< ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ------->-- ---------- ---------| UAUAAGUGUA AUAAUGC-UA 4681 GA|AUGAGUA -ACAA-GAA- aaa------- (-ccgg---- ---------- ---------- 4741 ---------- -----)---- --uuu-|ucu --ccua-ACA CAA--guguu a|----guua 4801 gaac----gg ---------- ----(--acu ac)c-c|--a cugacu---- ---------- 4861 ---guuau-- -uga------ ---------- -------(-- ---------- ------)<-- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 >--------- ---------- ---------- ----(----- ---------- ---------- 5041 ---------- ---------- ----)----- |-----|--- ---------- |--<------ 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ---------- ---------- 5221 ---------- ---------- ---------- ---------- ---------- ---------- 5281 ---------- ---------- ---------- ---------- ---------- ---------- 5341 ---------- ---------- ---------- ---------- ---------- ---------- 5401 ---------- ---------- ------->-- ---------- ---------- ---------- 5461 -----(---- ------)--- ---|------ --------|- ---------- -(-----)-- 5521 |--------- ---------- ---------- -----(---- )--------- ---------- 5581 --<------- ---------- ---------- ---------- ---------- ---------- 5641 ---------- ---------- ------->-- ---------- ---------- ---<------ 5701 ---------u aaauuauuau aauuaccuuu uauaagcaag agauacauau aauauuua-- 5761 ---------- ---------- ---------- ---------- ---------- ---------- 5821 ---------- ---------- ---------- ---------- ---------- ---------- 5881 ---------- ---------- ---------- ---------- ---------- ---------- 5941 ---------- ---------- ---------- ---------- ---------- ---------- 6001 ---------- ---------- ---------- ---------- ---------- ---------- 6061 ---------- ---------- ---------- ---------- ---------- ---------- 6121 ---------- ---------- ---------- ---------- ---------- ---------- 6181 ---------- ---------- ---------- ---------- ---------- ---------- 6241 ---------- ---------- ---------- ---------- ---------- ---------- 6301 ---------- ---------- ---------- ---------- ---------- ---------- 6361 ---------- ---------- ---------- ---------- ---------- ---------- 6421 ---------- ---------- ------>--- ---------- ---------- --acau-|-- 6481 ---AAACUC- -(AACACA)G A|AGUGU--- ----(auu-- ------)--- -----agaa| 6541 |---AGGU-U A--AAAGAUU -AAGA-AGGA ACUCGGCAAA ---------- ---------- 6601 ---------- ---------- ---------- ---------- ---------- ---------- 6661 ---------- ---------- ---------- ---------- ---------- ---------- 6721 ---------- ---------- ---------- ---------- ---------- ---------- 6781 ------(--- )--------c aaAAGCCU|C GC---CUG-U UU(ACCAA)A AA-CAUC-GC 6841 CUUUUG|U-- ---------- ---------- (ucaauuu-- ------)--- ---------- 6901 ------AAA- UAA-AAGGUA CUGCCU<--- ---------- ---------- ---------- 6961 ---------- ---------- -------->G CC-CU-GU|G AC-------- ---------- 7021 ---------- --(------- ---------- ---------- ---------- ---------- 7081 ---------- ---------- ---------u aug)------ ---------- ---------| 7141 ---GUUC-AA C-|GG-C|-C -GCGGU-(AU -UUUG)ACCG UG|C(GAA)- GG-UAGNGUA 7201 AUC-AC-U-U |GUCUCU(-U AAAU-)UGGG AC|CU-GUAU GAAUGGCAAA A-CGAGGGCU 7261 UG-------- ---------- -------ACU GUCUCCUUUA UUCA-AC-CA ----GUGAAA 7321 UU|G|AGCUU UC-UG(U-AC AAAAG)CAGA AAU----AUU UACAUAAGAC GAGAAG-ACC 7381 CUGUGG-|-A GCUUA--AGA CU|--c-uaa cac--uua-| <--------- ---------- 7441 ---------- ---------- --->------ ---------- ---------- ---------- 7501 ---------- ---------- ---------- --<------- ---------- ---------- 7561 -----cuaaa auauaaacaa agcgagcccu a--------- ---------- ---------- 7621 ---------- ---------- ---------> --(------- -)-------- ---------- 7681 ---------- -------|-- ---------- ---------- ---------- ---------- 7741 -----(---- ----)----- ---------- ---------- ---------- --------<- 7801 ---------- ---------- ---------- ---------- ---------- ---------- 7861 ---------- ---------- ---------- ---------- ---------- ---------- 7921 ---------- ---------- ---------- ---------- ---------- ---------- 7981 ---------- ---------- ---------- ---------- ---------- ---------- 8041 ---------- ---------- ---------- ---------- ---------- ---------- 8101 ---------- ---------- ----->---- --gug-u-ua -aa---U-GU CUUUGGUUG( 8161 GGG)UG-AC- C|GCGGAG(- --------AA AAACUAAAC- )CUCC-GU|A |a|ug---|< 8221 ---------- ---------- ---------- ---------- ---------- ---------- 8281 ---------- ---------- ---------- ---------- ---------- ------aaug 8341 gcuag----- accu------ ---------- ---------- ---------- ->-------- 8401 ---------- ---------- ---------- ---------- ---------- ---------- 8461 ---------- ---------- ---------- ---------- ---------- ---------- 8521 ---------- ---------- ---------- ---------- ---------- ---------- 8581 ---------- ---------- ---------- ---------- ---------- ---------- 8641 ---------- ---------- ---------- ---------- ---------- ---------- 8701 ---------- ---------- ---------- ---------- --|------- ---------- 8761 --------aa cuuaa-gag( -agacag--- )cucua-aaa -auagaaucu cu-------- 8821 ---------- ---------- ---------- ---------- ---------- --------aa 8881 c|---acaau UGAUC-cag- ---------- ---------- ---(------ ---------- 8941 ---------- ---------- ---------- ---------- --------ga aa)--|---- 9001 CUGAUCAUU- |GAA-CCAAG UUACCC|CAG G|GAUAACAG |C-GCA-A-U CUCCCCUAAG 9061 AG(C--CCCA )AUCGACGGG --GAGGUUUA CG-ACCUCGA UGUU|GG--A U|C|AGGAC| 9121 AU-CC-UGAU GG-UG(--CA -GC)CGCUAU CAAG-GGU|U UGUU(UGUUC )AACAA-UUA 9181 A-uAGUCCU- --ACGUGAUC UGAGUUCAGA CC|GG-A(GA AA)UCCAGGU CAGUUUCUAU 9241 CU|AUG---- --|-|<---- ---------- ---------- ---------- -----auua- 9301 >--------- ---------- --U-CUU-UU CU--(UAGU- AC(-GAAA)G GACC-)AGAA 9361 A--AG-- cgggcca-au gu-------- 9421 -|-------- (-----) 9541 ---------- ---------- -uau-gcccg acc------- ---------- -------uau 9601 ---------- ---auuuacu (gaauua--a uauaa)a-gu -aa-guaaau a--------- 9661 ---------- ---------| ------(--- )--------- -------|cc 9961 ag-(aagaua a--)-cuggc a~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10021 ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~~~ 10141 ~~~~~~~~~~ ~~~~~~~~~~ ~)~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10201 ~~~~~~~~~~ ~|~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10321 ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ||||| // LOCUS mt.P.dollo 10775 bp RNA RNA 11-JAN-191 DEFINITION Mitochondrion Protopterus dolloi. ACCESSION No information KEYWORDS No information. SOURCE Mitochondrion Protopterus dolloi. ORGANISM Mitochondrion Protopterus dolloi. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 10775) Corresponding GenBank entry: L42813 LOCUS PRRMTCG 16646 bp DNA VRT 11-JAN-1996 DEFINITION Protopterus dolloi complete mitochondrial genome. ACCESSION L42813 NID g1161203 KEYWORDS 12S ribosomal RNA; 16S ribosomal RNA; NADH dehydrogenase; complete genome; mitochondrial DNA; transfer RNA. SOURCE Mitochondrion Protopterus dolloi adult eggs DNA. ORGANISM Mitochondrion Protopterus dolloi Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Dipnoi; Lepidosireniformes; Protopteridae; Protopterus. REFERENCE 1 (bases 1 to 16646) AUTHORS Zardoya,R. and Meyer,A. TITLE The complete nucleotide sequence of the mitochondrial genome of the lungfish (Protopterus dolloi), supports its phylogenetic position as a close relative of land vertebrates JOURNAL Unpublished (1995) COMMENT NCBI gi: 1161203 FEATURES Location/Qualifiers source 1..16646 /organism="Mitochondrion Protopterus dolloi" /mitochondrion /dev_stage="adult" /sequenced_mol="DNA" /tissue_type="eggs" tRNA 1..67 /gene="tRNA-Phe" /note="putative" /anticodon=(pos:31..33,aa:Phe) /product="transfer RNA-Phe" rRNA 68..1000 /gene="12S rRNA" /note="putative" /product="12S ribosomal RNA" tRNA 1001..1072 /gene="tRNA-Val" /note="putative" /anticodon=(pos:1034..1036,aa:Val) /product="transfer RNA-Val" rRNA 1073..2663 /gene="16S rRNA" /note="putative" /product="16S ribosomal RNA" tRNA 2664..2738 /gene="tRNA-Leu(UUR)" /note="putative" /anticodon=(pos:2699..2701,aa:Leu) /product="transfer RNA-Leu" CDS 2739..3707 /note="NCBI gi: 1161204" /codon_start=1 /transl_table=2 /product="NADH dehydrogenase subunit 1" /db_xref="PID:g1161204" /translation="MNPLPTITNSLMYIVPILLAVAFLTLVERKIIGYMQHRKGPNVV GPYGLLHPIADGVKLFIKEPVRPTASSTTLFILAPTLALTLALLIWTPLPMPFPMANV NLTLLFIMAVSSLSVYSILTSGWASNSKYALIGALRAIAQTISYEVSLGLILLAAIIF MGNFSMLTFSTGQEAIWLIIPAWPLATMWYVSTLAETNRSPFDLTEGESELASGFNVE YAGGPLASFYLAEYANIMLMNTISVIIFLGDSLNLLLPEMMTSLLMFKTTALSLVFLW VRASYPRFRYDQLMHLIWKNFLPLTLSLIILHISAPLAFTGLPPQF" tRNA 3706..3777 /gene="tRNA-Ile" /note="putative" /anticodon=(pos:3738..3740,aa:Ile) /product="transfer RNA-Ile" tRNA complement(3775..3845) /gene="tRNA-Gln" /note="putative" /anticodon=(pos:3811..3813,aa:Gln) /product="transfer RNA-Gln" tRNA 3845..3913 /gene="tRNA-Met" /note="putative" /anticodon=(pos:3875..3877,aa:Met) /product="transfer RNA-Met" CDS 3914..4942 /note="putative; NCBI gi: 1161205" /codon_start=1 /transl_table=2 /product="NADH dehydrogenase subunit 2" /db_xref="PID:g1161205" /translation="MSPTILSVLIMSLGLGTTVTFMSSNWLLAWIGLEINTMSIIPLM SQQHHPRATEAATKYFLAQAAASIMILFSSMINAWVAGEWNITNLLSPTSATLITLAL AIKIGLAPMHFWLPEVLQGVTLMTGAILVTWQKLAPFILLYQISDTVNPTLLLVLALS TLTGGWSGLNQTQLRKILAYSSIAHMGWMTMILPFAPNLALLNLMIYITLTLPLFFTL NICSSTSIPSLALNWTKSPLLMTMLLITLLSLGGLPPLTGFMPKWLILQELTNNDLYI FATAAALSALLSLYFYLRLCYTTSLTTSPNTLNNNHWRPNAGTYQILSMILIFATALL PLTPGLIM" tRNA 4945..5014 /gene="tRNA-Trp" /note="putative" /anticodon=(pos:4976..4978,aa:Trp) /product="transfer RNA-Trp" tRNA complement(5015..5083) /gene="tRNA-Ala" /note="putative" /anticodon=(pos:5051..5053,aa:Ala) /product="transfer RNA-Ala" tRNA complement(5084..5156) /gene="tRNA-Asn" /note="putative" /anticodon=(pos:5121..5123,aa:Asn) /product="transfer RNA-Asn" tRNA complement(5182..5248) /gene="tRNA-Cys" /note="putative" /anticodon=(pos:5218..5220,aa:Cys) /product="transfer RNA-Cys" tRNA complement(5249..5317) /gene="tRNA-Tyr" /note="putative" /anticodon=(pos:5284..5286,aa:Tyr) /product="transfer RNA-Tyr" CDS 5319..6866 /note="putative; NCBI gi: 1161206" /codon_start=1 /transl_table=2 /product="cytochrome oxidase subunit 1" /db_xref="PID:g1161206" /translation="MTLTRWLFSTNHKDIGTLYMVFGAWAGMVGTALSLLIRAELSQP GALLGDDQVYNVLVTAHAFVMIFFMVMPIMIGGFGNWLIPLMIGAPDMAFPRMNNMSF WLLPPSFLLLLAGSGVEAGAGTGWTVYPPLASNLAHAGASVDLTIFSLHLAGVSSILG SINFITTIINMKPPAASQYQTPLFIWSVMITTVLLVLSLPVLAAGITMLLTDRNLNTT FFDPAGGGDPILYQHLFWFFGHPEVYILILPGFGMISHIVGFYSGKKEPFGYMGMVWA MMAIGLLGFIVWAHHMFTVGMDVDTRAYFTSATMIIAIPTGVKVFSWLATLHGGAIKW ETPLLWALGFIFLFTVGGLTGIVLANSSLDIMLHDTYYVVAHFHYVLSMGAVFAIMGG LMHWFPLMTGYTLHDTWTKIHFGVMFLGVNLTFFPQHFLGLAGMPRRYSDYPDAYTLW NTLSSVGSLISLVAVILLLFIIWEAFASKREVNSIELIYTNVEWMHGCPPPYHTFEEP AFVQIQR" tRNA complement(6871..6941) /gene="tRNA-Ser(UCN)" /note="putative" /anticodon=(pos:6907..6909,aa:Ser) /product="transfer RNA-Ser" tRNA 6944..7012 /gene="tRNA-Asp" /note="putative" /anticodon=(pos:6974..6976,aa:Asp) /product="transfer RNA-Asp" CDS 7015..7705 /note="putative; NCBI gi: 1161207" /codon_start=1 /transl_table=2 /product="cytochrome oxidase subunit 2" /db_xref="PID:g1161207" /translation="MAHPSQLGLQDAASPVMEELIHFHDHALMIVFLISTLVLYIIVA MVSTKFTNKFILDSQEIEIVWTILPAVILIMIALPSLRILYLMDEINDPHLTVKAVGH QWYWSYEYSDYETLNFDSYMTPTQDLTPGQFRLLETDYRMVVPMESPIRVLITADDVI HSWAVPALGIKMDAVPGRLNQASFITARPGMFYGQCSEIWGANHSFMPIVVEAAPLQH FENWSSLMLEKA" tRNA 7706..7774 /gene="tRNA-Lys" /note="putative" /anticodon=(pos:7736..7738,aa:Lys) /product="transfer RNA-Lys" CDS 7776..7943 /note="putative; NCBI gi: 1161208" /codon_start=1 /transl_table=2 /product="adenosine triphosphate subunit 8" /db_xref="PID:g1161208" /translation="MPQLNPGPWFNILLISWLTFLLILLPKILSHKTNNCPTPQSQDK LFLPPWNWPWL" CDS 7934..8615 /note="'putative'; NCBI gi: 1161209" /codon_start=1 /transl_table=2 /product="'Adenosine Triphosphatase subunit 6'" /db_xref="PID:g1161209" /translation="MTLSFFDQFLSPTILGIPLIFLSLILPWLLYPTAPNRWLTSRLL TLQNWLILRTAAQLMAPINQQGQKWAVILTSLMLFLISINLLGLLPYTFTPTTQLSMN MGWGVPMWLATVLIGLRNQPTTSIGHLLPEGTPNLLIPALVVIETISLFIRPLALGVR LTANLTGGHLLMQLIATAAFFGASVMPTIALLPYTILFLLTILELAGAMIQAYVCALL LTLYLQENI" CDS 8616..9399 /note="putative; NCBI gi: 1161210" /codon_start=1 /transl_table=2 /product="cytochrome oxidase subunit 3" /db_xref="PID:g1161210" /translation="MAHQAHASHMGDPSPWPLTGATAALLMTSGLAIWFHYHTVILLT IGLILTLLTMYQWWRDVVREGTFQGHHTAPVQKGLRYGMILFITSEVLFFFGFFWAFY HSSLAPTPELGGCWPPTGIVPLDPFEVPLLNTAVLLASGVTVTWAHHSLMEGNRKETT QALIFTVLLGLYFTALQAMEYYEAPFTIADSVYGATFFVATGFHGLHVIIGSTFLLIC LLRQAQYHFTSNHHFGFEASAWYWHFVDVVWLCLYVSIYWWGS" tRNA 9400..9469 /gene="tRNA-Gly" /note="putative" /anticodon=(pos:9431..9433,aa:Gly) /product="transfer RNA-Gly" CDS 9471..9816 /note="putative; NCBI gi: 1161211" /codon_start=1 /transl_table=2 /product="NADH dehydrogenase subunit 3" /db_xref="PID:g1161211" /translation="MNLLIVMIISTALPIILMLLGFWLPNLNPDNEKVSPYECGFDPL GSARLPFSLKFFLVAILFLLFDLEIAILLPLPWALQYDTPTTAFLIALLILILLTLGL IYEWLQGGLEWAE" tRNA 9817..9885 /gene="tRNA-Arg" /note="putative" /anticodon=(pos:9847..9849,aa:Arg) /product="transfer RNA-Arg" CDS 9886..10182 /note="putative; NCBI gi: 1161212" /codon_start=1 /transl_table=2 /product="NADH dehydrogenase subunit 4L" /db_xref="PID:g1161212" /translation="MTPTLFSIVSAFYSSLMGLALNRSHLILALLCLEGAMLSVFLML SMWSAFQGPYSIAGTPLILLALAACEAGTGLALMVATARTHGTDHLKSLNLLQC" CDS 10176..11559 /note="putative; NCBI gi: 1161213" /codon_start=1 /transl_table=2 /product="NADH dehydrogenase subunit 4" /db_xref="PID:g1161213" /translation="MLKILIPTIMLIPTTWLISLPLLWTMPLIYTTLIACASLSFLKW NSISGWSFINLYMTIDSISAPLLVLSCWLLPLMILASQNHMLHEPLQRQRVYLILLMI LQTFLLLTFMASELIMFYVMFEATLIPTLIIITRWGNQAERLQAGTYFLFYTLAGSLP LLIALLLINKNMMTSSIVLLNFFSTDFSSNSYASTLWWAASLFAFLVKMPLYGVHLWL PKAHVEAPIAGSMVLAAILLKLGGYGMLRMIPILPPLAKPLIYPFIILALWGIIMTGM ICLRQSDLKSLIAYSSVSHMGLVISGILIQTPWGLTGAITLMIAHGLTSSLLFCLANT NYERTHSRTMLLARGMQTILPLFGLWWLLANLTNLALPPSINLMGELPIIMATFNWAG LTILLTGIGTLITATYSLYMYMMTQHGQISPQTTMMEPAHTREHLLISLHLIPSFLLI MKPELIWGWFC" tRNA 11560..11628 /gene="tRNA-His" /note="putative" /anticodon=(pos:11590..11592,aa:His) /product="transfer RNA-His" tRNA 11629..11697 /gene="tRNA-Ser(AGY)" /note="putative" /anticodon=(pos:11655..11657,aa:Ser) /product="transfer RNA-Ser" tRNA 11698..11766 /gene="tRNA-Leu(CUN)" /note="putative" /anticodon=(pos:11728..11730,aa:Leu) /product="transfer RNA-Leu" CDS 11767..13602 /note="putative; NCBI gi: 1161214" /codon_start=1 /transl_table=2 /product="NADH dehydrogenase subunit 5" /db_xref="PID:g1161214" /translation="MTQQSVMLSSSLLIFFILLAPLALALVPSLITPHWHKFYAKSAV KLAFFISLLPLFLFMDQGIEIVSTNYQWMAINSFTFNIAFKFDFLSITFMSIALFVTW SILDFAAWYMHEDPYINQFFKYLLLFLTAMMVLTSANNLFQLFIGWEGVGIMSFLLIG WWYGRADANTAALQAVLYNRIGDIGLILAISWFTTNFNTLDIQQLFILNTNESSIIPL LGLILAATGKSAQFGLHPWLPAAMEGPTPVSALLHSSTMVVAGIFLLLRLHPLLQNNE TALTLCLLLGAITTVFTATCALTQNDIKKIVAFSTSSQLGLMMVTIGLNQPLLAFLHI CTHAFFKAMLFLCSGSIIHNLNNEQDIRKMGGLNMALPMTTSCLLIGSLALSGGPFLG GFFSKDAIIEAMNSSFLNAWALTWTLIATSFTAAYSLRIIFYVSMNFPRYPALTPILE AQQASTPIMRLAIGSVVAGFLLILNIPPPPPQVMTMPTSAKLAAIGVTIVGLFTAAEL SNITNKQLKTFPYLTPYNFSNMLAYFQSTTHRLFPTLNLKWAQLLATHLIDVIWLEKS GAKSSMKINTTFSTFITNSQQGMIKTYLTLFFMSTATFLMFLLLN" CDS complement(13591..14103) /note="putative; NCBI gi: 1161215" /codon_start=1 /transl_table=2 /product="NADH dehydrogenase subunit 6" /db_xref="PID:g1161215" /translation="MSFIFFTLLVGFLVSLIGVASNPAPYFAALGLVFGAGIGCGILI WLGNSFLSLILFLIYLGGMLVVFGYSAALAAEPYPGGWEDWSVLLYSLLLLGAGVGIG WAVVGGWDVFDSASFLGGTILGELSGVGGMYWCGGFILVLVGWSLLLALFVVLEVTRG GVRGAMRPIE" tRNA complement(14104..14172) /gene="tRNA-Glu" /note="putative" /anticodon=(pos:14140..14142,aa:Glu) /product="transfer RNA-Glu" CDS 14175..15318 /note="putative; NCBI gi: 1161216" /codon_start=1 /transl_table=2 /product="cytochrome b" /db_xref="PID:g1161216" /translation="MATNIRKTHPLLKIVNNSLIDLPTPSNISAWWNFGSLLGFCLIT QILTGLFLAMHYTADTSTAFSSIAHIARDVNYGWLLRNIHANGASMFFICIYIHIGRG IYYGSFLYTETWNIGVVLFLLTMMTAFVGYVLPWGQMSFWGATVITNLLSAVPYLGDT LVQWIWGGFSVDNATLTRFFAFHFLLPFIISAMTAAHFLFLHETGSNNPTGLNSNLDK ISFHPYFTMKDLLGFLMLASFLCLLALFSPNLLGDPENFTPANPLVTPTHIKPEWYFL FAYAILRSIPNKLGGVLALMASILILFIIPFLHRAKQRTMSYRPLSQFMFWLLTADML ILTWIGGQPVEHPFILIGQIASATYFLLFLLLFPLITSLENKLLYKY" tRNA 15319..15390 /gene="tRNA-Thr" /note="putative" /anticodon=(pos:15350..15352,aa:Thr) /product="transfer RNA-Thr" tRNA complement(15393..15462) /gene="tRNA-Pro" /note="putative" /anticodon=(pos:15429..15431,aa:Pro) /product="transfer RNA-Pro" D-loop 15463..16646 /note="control region" BASE COUNT 4800 a 4406 c 2616 g 4824 t ORIGIN BASE COUNT 536 a 341 c 311 g 403 t 9184 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~A C--------- ----uaaaug 301 |GUa--agc| cug------- -|-------- ---------- ---------| -----(---- 361 ---------) -|-------- -------|-- -------(-- ---------- ---------- 421 -------)-- ---------- ---------- ---------- ---------- -----(---- 481 )---|----- --(-----)- ---------- ---------- ---------- -(------)- 541 ---------- ---------- ---<------ -ucauuuuuu aacauguaaa uuuuauauaa 601 cacacacucu g--------- ---------- ---------- ---------- ---------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 ---------- ---------- ---------- ---------- ---------- ---------- 781 ---------- ---------- ---------- -------->- ---------- |-----UAAG 841 UAA(ACCA)U UUA------- ---------- ---------- ---------- --------u- 901 ------(--- --)------- |acu-ucuA- -GUAU-U(-G GAGA)AAGAA -agaaa---- 961 -------<-- --uucaa--- ---------- ---------- ---------- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- --->------ 1201 ---------- ---------- ---------- ---------< ---------- ---------- 1261 ---------- ---------- ---------> (------)-- ---------- ---|-(---) 1321 -------(-- -----)---- ---------- ---------- ---------- --<------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- >--------- ------(--- ---------- 1561 -------)-- ---------- ---------- -(-------) ---------- ---------- 1621 ---------- -------GCG CAUA-AA--- ---AGUACC( -GCAA-)GGG ---AAA-AC- 1681 ugaaaaacua gugaaaaau- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- -----uaa-G U-AAAA GCAAAG---- --------<- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------> (--acuaaca 2041 --)------- -----CUU-G UACCUU(UU- GCAUC)AUGG |UCU-AGCUA GUcau-gaa- 2101 ggg-cagaa- ---------- -------(-- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- -)-------- ---------- 2521 ----(----- )-----<--- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- -aga->---- --(------) ---------- ---------- auuuuagucc 2701 ca--ccCCCg AA-ACUAG-G CG-AGCUACU CCG-AGA-CA GCC------- ---------- 2761 -(-------- ---------- ---------- ---------- -----aaac) ---------- 2821 -GGGCCAA-C UC-GUCCAU( GUGGCAA-A) AUGG-UGAGa --aGAGCUC- CGAGUAG-CG 2881 GU(G-AAAA) GCC-AAAC-G A-GCCUAGAG AUAGCU-GGU UGCGC--GAG AA-ACG-AAU 2941 (-CUUA)GUU CU-AC-CCUA AAUU<----- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ------->-- ---|------ 3061 -|------|- ---------- ---------- --------(- --------)< uuucacgggc 3121 uaca-----g ccuuaaaccc cguaauu--- ---------- ---------- ---------- 3181 ----aa---- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---->----- ---------- 3301 ---------- ---------- ----|----- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ------AU-U -UAGA-GGCU ACUCA--AA- GG-GG(-GGA 3481 CAG)CCCCUU UG-UG----- -aAAGG(ACA -CAA)CCU-c aacaa-a-cg -ga-UAA--- 3541 --ugauuaau cuacaag-g- ua-------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ------aaau u<-------- ---------- ---------- 3721 ---------- ---------- ---------- ---------- -->UaaGU-G GGC(CUAAAA 3781 GC-A)-GCCA -CCaa|c(a- aa)-|GAAAG C(--GUAUA- )GC|-UCCc- ccau--<--- 3841 --aacuuuau ccaucaauuc aauuaaacaa ---------- ---------- ---------- 3901 ->-------- -------|-- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- ---------- 4021 ---------- ---------- ---------- ---------- ---------- ---------- 4081 -------|uc auaa--ucc| au-c-uu|-- ---------- ---------- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- ---------- ---------- ---------- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ------acgu aUCGA-GC|- UG-ACUUAUA ---------- 4501 ---------- ---------- (ucau---)< ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ------->-- ---------- ---------| UAUAAGUGCA AAAAUGC-UA 4681 GA|AUGAGUA -ACAA-GAA- aa-------- (-uacaa--- ---------- ---------- 4741 ---------- -----)---- ---uu-|uuc u-ccuc-ACA UAG--guguu a|----guca 4801 gaac----ag ---------- ----(--auu ac)c-u|--a cugaca---- ---------- 4861 ---auuac-- -uga------ ---------- -------(-- ---------- ------)<-- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 >--------- ---------- ---------- ----(----- ---------- ---------- 5041 ---------- ---------- ----)----- |-----|--- ---------- |--<------ 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ---------- ---------- 5221 ---------- ---------- ---------- ---------- ---------- ---------- 5281 ---------- ---------- ---------- ---------- ---------- ---------- 5341 ---------- ---------- ---------- ---------- ---------- ---------- 5401 ---------- ---------- ------->-- ---------- ---------- ---------- 5461 -----(---- ------)--- ---|------ --------|- ---------- -(-----)-- 5521 |--------- ---------- ---------- -----(---- )--------- ---------- 5581 --<------- ---------- ---------- ---------- ---------- ---------- 5641 ---------- ---------- ------->-- ---------- ---------- ---<------ 5701 ---------- uaaugaacac aauguauuaa ccugucau-- -----aagca agaaaacccu 5761 acacugauau a--------- ---------- ---------- ---------- ---------- 5821 ---------- ---------- ---------- ---------- ---------- ---------- 5881 ---------- ---------- ---------- ---------- ---------- ---------- 5941 ---------- ---------- ---------- ---------- ---------- ---------- 6001 ---------- ---------- ---------- ---------- ---------- ---------- 6061 ---------- ---------- ---------- ---------- ---------- ---------- 6121 ---------- ---------- ---------- ---------- ---------- ---------- 6181 ---------- ---------- ---------- ---------- ---------- ---------- 6241 ---------- ---------- ---------- ---------- ---------- ---------- 6301 ---------- ---------- ---------- ---------- ---------- ---------- 6361 ---------- ---------- ---------- ---------- ---------- ---------- 6421 ---------- ---------- ------>--- ---------- ---------- --ucau-|-- 6481 ---aAAUUC- -(UACACU)G A|AGUGU--- ----(gcuu- ------)--- -----ggaa| 6541 |---AAAU-U A--AGGGGGG -GAGA-AGGA AUUCGGCAA- ---------- ---------- 6601 ---------- ---------- ---------- ---------- ---------- ---------- 6661 ---------- ---------- ---------- ---------- ---------- ---------- 6721 ---------- ---------- ---------- ---------- ---------- ---------- 6781 ------(--- )--------c uaUGGCCU|C GC---CUG-U UU(ACCAA)A AA-CAUC-GC 6841 CUCCUG|c-- ---------- ---------- (caa------ ------)--- ---------- 6901 ------aua- UAG-GAGGUA CUGCCU<--- ---------- ---------- ---------- 6961 ---------- ---------- -------->G CC-CU-GU|G AC-------- ---------- 7021 ---------- --(------- ---------- ---------- ---------- ---------- 7081 ---------- ---------- ---------- ucu)------ ---------- ---------| 7141 ---GUUU-AA Cu|GG-C|-C -GCGGU-(AU -UUUG)ACCG UG|C(GAA)- GG-UAGCGUA 7201 AUC-AC-U-U |GUCUCU(-U AAUU-)AGGG AC|CU-GUAU GAAUGGCAAC A-CGAGGGUC 7261 CA-------- ---------- -------ACU GUCUCCUCCC CCAG-AU-UA ----GUGAAA 7321 UU|G|AUCUA UC-CG(U-UC AAAAG)CGGA UAU----UUU UUCAUAAGAC GAGAAG-ACC 7381 CUGuGG-|-A GCUUA--AAG UU|--c-uaa uau--ua--| <--------- ---------- 7441 ---------- ---------- --->------ ---------- ---------- ---------- 7501 ---------- ---------- ---------- --<------- ---------- ------aaca 7561 ug-agcguaa auauauacuu uaaguuuug- ---------- ---------- ---------- 7621 ---------- ---------- ---------- ---------- ---------- ---------- 7681 ---------- ---------- ---------- ---------- ---------- ---------- 7741 ---------- ---------- ---------- ---------- ---------- ---------- 7801 ---------- ---------- ---------- ---------- ---------- ---------- 7861 ---------- ---------- ---------- ---------- ---------- ---------- 7921 ---------- ---------- ---------- ---------- ---------- ---------- 7981 ---------- ---------- ---------- ---------- ---------- ---------- 8041 ---------- ---------- ---------- ---------- ---------- ---------- 8101 ---------- ---------- ----->---- --uaa-u-au -uaa-aU-AC UUUCGGUUG( 8161 GGG)CG-AC- C|ACGGAG(- --------UA UAAAAAACC- )CUCC-GC|A |a|ua---|< 8221 ---------- ---------- ---------- ---------- ---------- ---------- 8281 ---------- ---------- ---------- ---------- ---------- ---------- 8341 ca-au---uc u--------- ---------- ---------- ---------- ->-------- 8401 ---------- ---------- ---------- ---------- ---------- ---------- 8461 ---------- ---------- ---------- ---------- ---------- ---------- 8521 ---------- ---------- ---------- ---------- ---------- ---------- 8581 ---------- ---------- ---------- ---------- ---------- ---------- 8641 ---------- ---------- ---------- ---------- ---------- ---------- 8701 ---------- ---------- ---------- ---------- --|------- ---------- 8761 --------au uuuaa-gaa( -ggacac--- )uucuc-aaa cuagaauauc u--------- 8821 ---------- ---------- ---------- ---------- ---------- --------ag 8881 c|---acaau UGACC-cagu ---------- ---------- ---(------ ---------- 8941 ---------- ---------- ---------- ---------- ---------c ua)--|---A 9001 CUGAGCAAU- |GAA-CCAAG UUACCC|CAG G|GAUAACAG |C-GCA-A-U CCCCUUUAAG 9061 AG(U--CCCC )AUCGACGAG --GGGGUUUA CG-ACCUCGA UGUU|GG--A U|C|AGGGU| 9121 AU-CC-UGGU GG-UG(--CA -GC)CGCUAC CAAG-GGU|U UGUU(UGUUC )AACAA-UUA 9181 A--UAUCCU- --ACGUGAUC UGAGUUCAGA CC|GG-a(GC AA)UCCAGGU CAGUUUCUAU 9241 CU|AUG---- --|-|<---- ---------- ---------- ---------- -----acuu- 9301 >--------- ---------- --C-UUU-UU UC--(UAGU- AC(-GAAA)G GACU-)GAAA 9361 A--AG-- ggggccu-au au-------- 9421 -|-------- (-----) 9541 ---------- ---------- auau-gcccc acc------- ---------- -------cac 9601 ---------- ---uacuacu (gaauuu--a uauaa)a-gu -ag-ccaagu g--------- 9661 ---------- ---------| ------(--- )--------- -------|cg 9961 gg-(-agaaa a--)-ccaca cu~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10021 ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~~~ 10141 ~~~~~~~~~~ ~~~~~~~~~~ ~)~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10201 ~~~~~~~~~~ ~|~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10321 ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ||||| // LOCUS mt.Prot.sp 10775 bp RNA RNA 11-JAN-191 DEFINITION Mitochondrion Protopterus sp.. ACCESSION No information KEYWORDS No information. SOURCE Mitochondrion Protopterus sp. ORGANISM Mitochondrion Protopterus sp. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 10775) Corresponding GenBank entry: Z21923 ID MTPS12SRA standard; DNA; ORG; 2621 BP. XX AC Z21923; XX DT 14-JUN-1993 (Rel. 36, Created) DT 14-JUN-1993 (Rel. 36, Last updated, Version 2) XX DE Protopterus sp. mitochondrion 12S and 16S rRNA genes, and tRNA-Val DE and -Leu genes. XX KW 12S ribosomal RNA; 16S ribosomal RNA; transfer RNA-Leu; KW transfer RNA-Val. XX OS Protopterus sp. OC Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Osteichthyes; OC Sarcopterygii; Lepidosireniformes. XX OG Mitochondrion XX RN [1] RC (sites) RA Hedges S., Hass C.A., Maxson L.R.; RT "The closest living relative of tetrapods indicated by RT slow-evolving mitochondrial genes"; RL Nature 0:0-0(1993). XX RN [2] RP 1-2621 RA Hedges S.; RT ; RL Submitted (05-MAR-1993) on tape to the EMBL Data Library by: RL Hedges S., Pennsylvania State University, Biology, 208 Mueller Lab, RL University Park, PA, USA, 16802 XX RN [3] RP 1-2621 RA Hedges S., Hass C.A., Maxson L.R.; RT "Relations of fish and tetrapods"; RL Nature 363:501-502(1993). XX FH Key Location/Qualifiers FH FT source 1..2621 FT /organism="Protopterus sp." FT /mitochondrion FT rRNA 1..930 FT /product="12S rRNA" FT /citation=[1] FT tRNA 931..1002 FT /product="tRNA-Val" FT /citation=[1] FT rRNA 1003..2592 FT /product="16S rRNA" FT /citation=[1] FT tRNA 2593..2621 FT /product="tRNA-Leu" FT /citation=[1] XX SQ Sequence 2621 BP; 858 A; 596 C; 534 G; 631 T; 2 other; BASE COUNT 533 a 340 c 312 g 403 t 9187 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~A C--------- ----uaaaug 301 |GUa--agc| cug------- -|-------- ---------- ---------| -----(---- 361 ---------) -|-------- -------|-- -------(-- ---------- ---------- 421 -------)-- ---------- ---------- ---------- ---------- -----(---- 481 )---|----- --(-----)- ---------- ---------- ---------- -(------)- 541 ---------- ---------- ---<------ -ucauuuuuu aacauguaaa uuuuauauaa 601 cacacacucu g--------- ---------- ---------- ---------- ---------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 ---------- ---------- ---------- ---------- ---------- ---------- 781 ---------- ---------- ---------- -------->- ---------- |-----UAAG 841 UAA(ACCA)U UUA------- ---------- ---------- ---------- --------u- 901 ------(--- --)------- |acu-ucUA- -GUAU-U(-G GAGA)AAGAA -Agaaa---- 961 -------<-- --uucaa--- ---------- ---------- ---------- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- --->------ 1201 ---------- ---------- ---------- ---------< ---------- ---------- 1261 ---------- ---------- ---------> (------)-- ---------- ---|-(---) 1321 -------(-- -----)---- ---------- ---------- ---------- --<------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- >--------- ------(--- ---------- 1561 -------)-- ---------- ---------- -(-------) ---------- ---------- 1621 ---------- -------GCG CAUA-AA--- ---AGUACC( -GCAA-)GGG ---AAA-AC- 1681 UGaaaaacua gugaaaaau- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- -----uaa-G U-AAAA GCAAAG---- --------<- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------> (--acuaaca 2041 --)------- -----CUU-G UACCUU(UU- GCAUC)AUGG |UCU-AGCUA GUcau--ga- 2101 agggcagaa- ---------- -------(-- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- -)-------- ---------- 2521 ----(----- )-----<--- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- agaa->---- --(------) ---------- ---------- -uuuuagucc 2701 ca--ccCCCG AA-ACUAG-G CG-AGCUACU CCG-AGA-CA GCCA------ ---------- 2761 -(-------- ---------- ---------- ---------- ------aac) ---------- 2821 -GGGCCAA-C UC-GUCCAU( GUGGCAA-A) AUGG-UGAGA --AGAGCUC- CGAGUAG-CG 2881 GU(G-AAAA) GCC-AAAC-G A-GCCUAGAG AUAGCU-GGU UGCGC--GAG AA-ACG-AAU 2941 (-CUUA)GUU CU-AC-CCUA AAUU<----- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ------->-- ---|------ 3061 -|------|- ---------- ---------- --------(- --------)< uuucacgggc 3121 uaca-----g ccuuaaaccc cguaauu--- ---------- ---------- ---------- 3181 ----aa---- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---->----- ---------- 3301 ---------- ---------- ----|----- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ------AU-U -UAGA-GGCU ACUCA--AA- GG-GG(-GGA 3481 CAG)CCCCUU UG-UG----- -aAAGG(ACA -CAA)CCU-c aacaa-a-cg -ga-UAA--- 3541 --ugauuaau cuacaag-g- ua-------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ------aaau u<-------- ---------- ---------- 3721 ---------- ---------- ---------- ---------- -->UAAGU-G GGC(CUAAAA 3781 GC-A)-GCCA -CCAA|C(A- AA)-|GAAAG C(--GUAUA- )GC|-UCCc- ccau--<--- 3841 --aacuuuau ccaucaauuc aauuaaacaa ---------- ---------- ---------- 3901 ->-------- -------|-- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- ---------- 4021 ---------- ---------- ---------- ---------- ---------- ---------- 4081 -------|uc auaa--ucc| a--u-cu|-- ---------- ---------- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- ---------- ---------- ---------- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- -----uacgu aUCGA-GC|- UG-ACUUAUA ---------- 4501 ---------- ---------- (ucau---)< ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ------->-- ---------- ---------| UAUAAGUGCA AAAAUGC-UA 4681 GA|AUGAGUA -ACAA-GAA- aau------- (-aca----- ---------- ---------- 4741 ---------- -----)---- --auu-|uuc u-ccuc-ACA UAG--guguu a|----guca 4801 gaac----ag ---------- ----(--auu ac)c-u|--a cugaca---- ---------- 4861 ---auuac-- -uga------ ---------- -------(-- ---------- ------)<-- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 >--------- ---------- ---------- ----(----- ---------- ---------- 5041 ---------- ---------- ----)----- |-----|--- ---------- |--<------ 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ---------- ---------- 5221 ---------- ---------- ---------- ---------- ---------- ---------- 5281 ---------- ---------- ---------- ---------- ---------- ---------- 5341 ---------- ---------- ---------- ---------- ---------- ---------- 5401 ---------- ---------- ------->-- ---------- ---------- ---------- 5461 -----(---- ------)--- ---|------ --------|- ---------- -(-----)-- 5521 |--------- ---------- ---------- -----(---- )--------- ---------- 5581 --<------- ---------- ---------- ---------- ---------- ---------- 5641 ---------- ---------- ------->-- ---------- ---------- ---<------ 5701 ---------- uaaugaacac aauguauuaa ccugucau-- -----aagca agaaaacccu 5761 acacugauau a--------- ---------- ---------- ---------- ---------- 5821 ---------- ---------- ---------- ---------- ---------- ---------- 5881 ---------- ---------- ---------- ---------- ---------- ---------- 5941 ---------- ---------- ---------- ---------- ---------- ---------- 6001 ---------- ---------- ---------- ---------- ---------- ---------- 6061 ---------- ---------- ---------- ---------- ---------- ---------- 6121 ---------- ---------- ---------- ---------- ---------- ---------- 6181 ---------- ---------- ---------- ---------- ---------- ---------- 6241 ---------- ---------- ---------- ---------- ---------- ---------- 6301 ---------- ---------- ---------- ---------- ---------- ---------- 6361 ---------- ---------- ---------- ---------- ---------- ---------- 6421 ---------- ---------- ------>--- ---------- ---------- --uca--|-- 6481 -u-aAAUUC- -(UACACU)G A|AGUGU--- ----(gcuu- ------)--- -----ggaa| 6541 |---AAAU-U A--AGGGGGG -GAGA-AGGA AUUCGGCAA- ---------- ---------- 6601 ---------- ---------- ---------- ---------- ---------- ---------- 6661 ---------- ---------- ---------- ---------- ---------- ---------- 6721 ---------- ---------- ---------- ---------- ---------- ---------- 6781 ------(--- )--------c uAUGGCCU|C GC---CUG-U UU(ACCAA)A AA-CAUC-GC 6841 CUCCUG|c-- ---------- ---------- (caa------ ------)--- ---------- 6901 ------aua- UAG-GAGGUA CUGCCU<--- ---------- ---------- ---------- 6961 ---------- ---------- -------->G CC-CU-GU|G AC-------- ---------- 7021 ---------- --(------- ---------- ---------- ---------- ---------- 7081 ---------- ---------- ---------- ucu)------ ---------- ---------| 7141 ---GUUU-AA Cu|GG-C|-C -GCGGU-(AU -UUUG)ACCG UG|C(GAA)- GG-UAGCGUA 7201 AUC-AC-U-U |GUCUCU(-U NNUU-)AGGG AC|CU-GUAU GAAUGGCAAC A-CGAGGGUC 7261 CA-------- ---------- -------ACU GUCUCCUCCC CCAG-AU-UA ----GUGAAA 7321 UU|G|AUCUA UC-CG(U-UC AAAAG)CGGA UAU----UUU UUCAUAAGAC GAGAAG-ACC 7381 CUGUGG-|-A GCUUA--AAG UU|--c-uaa uau--ua--| <--------- ---------- 7441 ---------- ---------- --->------ ---------- ---------- ---------- 7501 ---------- ---------- ---------- --<----aac -augagcgua aauau-auac 7561 uu-uaa---- ---------- -guuuug--- ---------- ---------- ---------- 7621 ---------- ---------- ---------- ---------- ---------- ---------- 7681 ---------- ---------- ---------- ---------- ---------- ---------- 7741 ---------- ---------- ---------- ---------- ---------- ---------- 7801 ---------- ---------- ---------- ---------- ---------- ---------- 7861 ---------- ---------- ---------- ---------- ---------- ---------- 7921 ---------- ---------- ---------- ---------- ---------- ---------- 7981 ---------- ---------- ---------- ---------- ---------- ---------- 8041 ---------- ---------- ---------- ---------- ---------- ---------- 8101 ---------- ---------- ---------- --uaa-u-au -uaa-aU-AC UUUCGGUUG( 8161 GGG)CG-AC- C|ACGGAG(- --------UA UAAAAAACC- )CUCC-GC|A |a|ua---|< 8221 ---------- ---------- ---------- ---------- ---------- ---------- 8281 ---------- ---------- ---------- ---------- ---------- ---------- 8341 ca-au---uc u--------- ---------- ---------- ---------- ->-------- 8401 ---------- ---------- ---------- ---------- ---------- ---------- 8461 ---------- ---------- ---------- ---------- ---------- ---------- 8521 ---------- ---------- ---------- ---------- ---------- ---------- 8581 ---------- ---------- ---------- ---------- ---------- ---------- 8641 ---------- ---------- ---------- ---------- ---------- ---------- 8701 ---------- ---------- ---------- ---------- --|------- ---------- 8761 --------au uuuaa-gaa( -ggacac--- )uucuc-aaa cuagaauauc u--------- 8821 ---------- ---------- ---------- ---------- ---------- --------ag 8881 c|---acaau UGACC-cagu ---------- ---------- ---(------ ---------- 8941 ---------- ---------- ---------- ---------- ---------c ua)--|---A 9001 CUGAGCAAU- |GAA-CCAAG UUACCC|CAG G|GAUAACAG |C-GCA-A-U CCCCUUUAAG 9061 AG(U--CCCC )AUCGACGAG --GGGGUUUA CG-ACCUCGA UGUU|GG--A U|C|AGGGU| 9121 AU-CC-UGGU GG-UG(--CA -GC)CGCUAC CAAG-GGU|U UGUU(UGUUC )AACAA-UUA 9181 A--uAUCCU- --ACGUGAUC UGAGUUCAGA CC|GG-A(GC AA)UCCAGGU CAGUUUCUAU 9241 CU|AUG---- --|-|<---- ---------- ---------- ---------- -----acuu- 9301 >--------- ---------- --C-UUU-UU UC--(UAGU- AC(-GAAA)G GACU-)GAAA 9361 A--AG-- ggggccu-au au-------- 9421 -|-------- (-----) 9541 ---------- ---------- auau-gcccc acc------- ---------- -------cac 9601 ---------- ---uacuacu (gaauuu--a uauaa)a-gu -ag-ccaagu g--------- 9661 ---------- ---------| ------(--- )--------- -------|cg 9961 gg-(-agaaa a--)-ccaca cu~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10021 ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~~~ 10141 ~~~~~~~~~~ ~~~~~~~~~~ ~)~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10201 ~~~~~~~~~~ ~|~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10321 ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ||||| // LOCUS (14)-Tetra 10775 bp RNA RNA 09-JAN-1999 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 10775) Corresponding GenBank entry: DIVIDER BASE COUNT 0 a 0 c 0 g 0 t 10775 others ORIGIN 1 |......... .......... .......... .......... .......... .......... 61 .......... .......... .......... .......... .......... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......... .......... .......... .......... 241 .......... .......... .......... .......... .......... .......... 301 .......... .......... .......... .......... .......... .......... 361 .......... .......... .......... .......... .......... .......... 421 .......... .......... .......... .......... .......... .......... 481 .......... .......... .......... .......... .......... .......... 541 .......... .......... .......... .......... .......... .......... 601 .......... .......... .......... .......... .......... .......... 661 .......... .......... .......... .......... .......... .......... 721 .......... .......... .......... .......... .......... .......... 781 .......... .......... .......... .......... .......... .......... 841 .......... .......... .......... .......... .......... .......... 901 .......... .......... .......... .......... .......... .......... 961 .......... .......... .......... .......... .......... .......... 1021 .......... .......... .......... .......... .......... .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .......... .......... .......... .......... .......... 1201 .......... .......... .......... .......... .......... .......... 1261 .......... .......... .......... .......... .......... .......... 1321 .......... .......... .......... .......... .......... .......... 1381 .......... .......... .......... .......... .......... .......... 1441 .......... .......... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... .......... .......... .......... .......... .......... 1621 .......... .......... .......... .......... .......... .......... 1681 .......... .......... .......... .......... .......... .......... 1741 .......... .......... .......... .......... .......... .......... 1801 .......... .......... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .......... .......... 1921 .......... .......... .......... .......... .......... .......... 1981 .......... .......... .......... .......... .......... .......... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... .......... .......... .......... .......... .......... 2161 .......... .......... .......... .......... .......... .......... 2221 .......... .......... .......... .......... .......... .......... 2281 .......... .......... .......... .......... .......... .......... 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... .......... 2701 .......... .......... .......... .......... .......... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... .......... 2881 .......... .......... .......... .......... .......... .......... 2941 .......... .......... .......... .......... .......... .......... 3001 .......... .......... .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .......... .......... 3181 .......... .......... .......... .......... .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .......... .......... .......... 3361 .......... .......... .......... .......... .......... .......... 3421 .......... .......... .......... .......... .......... .......... 3481 .......... .......... .......... .......... .......... .......... 3541 .......... .......... .......... .......... .......... .......... 3601 .......... .......... .......... .......... .......... .......... 3661 .......... .......... .......... .......... .......... .......... 3721 .......... .......... .......... .......... .......... .......... 3781 .....-.... .......... .......... .......... .......... .......... 3841 .......... .......... .......... .......... .......... .......... 3901 .......... .......... .......... .......... .......... .......... 3961 .......... .......... .......... .......... .......... .......... 4021 .......... .......... .......... .......... .......... .......... 4081 .......... .......... .......... .......... .......... .......... 4141 .......... .......... .......... .......... .......... .......... 4201 .......... .......... .......... .......... .......... .......... 4261 .......... .......... .......... .......... .......... .......... 4321 .......... .......... .......... .......... .......... .......... 4381 .......... .......... .......... .......... .......... .......... 4441 .......... .......... .......... .......... .......... .......... 4501 .......... .......... .......... .......... .......... .......... 4561 .......... .......... .......... .......... .......... .......... 4621 .......... .......... .......... .......... .......... .......... 4681 .......... .......... .......... .......... .......... .......... 4741 .......... .......... .......... .......... .......... .......... 4801 .......... .......... .......... ..)....... .......... .......... 4861 .......... .......... .......... .......... .......... .......... 4921 .......... .......... .......... .......... .......... .......... 4981 .......... .......... .......... .......... .......... .......... 5041 .......... .......... .......... .......... .......... .......... 5101 .......... .......... .......... .......... .......... .......... 5161 .......... .......... .......... .......... .......... .......... 5221 .......... .......... .......... .......... .......... .......... 5281 .......... .......... .......... .......... .......... .......... 5341 .......... .......... .......... .......... .......... .......... 5401 .......... .......... .......... .......... .......... .......... 5461 .......... .......... .......... .......... .......... .......... 5521 .......... .......... .......... .......... .......... .......... 5581 .......... .......... .......... .......... .......... .......... 5641 .......... .......... .......... .......... .......... .......... 5701 .......... .......... .......... .......... .......... .......... 5761 .......... .......... .......... .......... .......... .......... 5821 .......... .......... .......... .......... .......... .......... 5881 .......... .......... .......... .......... .......... .......... 5941 .......... .......... .......... .......... .......... .......... 6001 .......... .......... .......... .......... .......... .......... 6061 .......... .......... .......... .......... .......... .......... 6121 .......... .......... .......... .......... .......... .......... 6181 .......... .......... .......... .......... .......... .......... 6241 .......... .......... .......... .......... .......... .......... 6301 .......... .......... .......... .......... .......... .......... 6361 .......... .......... .......... .......... .......... .......... 6421 .......... .......... .......... .......... .......... .......... 6481 .......... .......... .......... .......... .......... .......... 6541 .......... .......... .......... .......... .......... .......... 6601 .......... .......... .......... .......... .......... .......... 6661 .......... .......... .......... .......... .......... .......... 6721 .......... .......... .......... .......... .......... .......... 6781 .......... .......... .......... .......... .......... .......... 6841 .......... .......... .......... .......... .......... .......... 6901 .......... .......... .......... .......... .......... .......... 6961 .......... .......... .......... .......... .......... .......... 7021 .......... .......... .......... .......... .......... .......... 7081 .......... .......... .......... .......... .......... .......... 7141 .......... .......... .......... .......... .......... .......... 7201 .......... .......... .......... .......... .......... .......... 7261 .......... .......... .......... .......... .......... .......... 7321 .......... .......... .......... .......... .......... .......... 7381 .......... .......... .......... .......... .......... .......... 7441 .......... .......... .......... .......... .......... .......... 7501 .......... .......... .......... .......... .......... .......... 7561 .......... .......... .......... .......... .......... .......... 7621 .......... .......... .......... .......... .......... .......... 7681 .......... .......... .......... .......... .......... .......... 7741 .......... .......... .......... .......... .......... .......... 7801 .......... .......... .......... .......... .......... .......... 7861 .......... .......... .......... .......... .......... .......... 7921 .......... .......... .......... .......... .......... .......... 7981 .......... .......... .......... .......... .......... .......... 8041 .......... .......... .......... .......... .......... .......... 8101 .......... .......... .......... .......... .......... .......... 8161 .......... .......... .......... .......... .......... .......... 8221 .......... .......... .......... .......... .......... .......... 8281 .......... .......... .......... .......... .......... .......... 8341 .......... .......... .......... .......... .......... .......... 8401 .......... .......... .......... .......... .......... .......... 8461 .......... .......... .......... .......... .......... .......... 8521 .......... .......... .......... .......... .......... .......... 8581 .......... .......... .......... .......... .......... .......... 8641 .......... .......... .......... .......... .......... .......... 8701 .......... .......... .......... .......... .......... .......... 8761 .......... .......... .......... .......... .......... .......... 8821 .......... .......... .......... .......... .......... .......... 8881 .......... .......... .......... .......... .......... .......... 8941 .......... .......... .......... .......... .......... .......... 9001 .......... .......... .......... .......... .......... .......... 9061 .......... .......... .......... .......... .......... .......... 9121 .......... .......... .......... .......... .......... .......... 9181 .......... .......... .......... .......... .......... .......... 9241 .......... .......... .......... .......... .......... .......... 9301 .......... .......... .......... .......... .......... .......... 9361 .......... .......... .......... .......... .......... .......... 9421 .......... .......... .......... .......... .......... .......... 9481 .......... .......... .......... .......... .......... .......... 9541 .......... .......... .......... .......... .......... .......... 9601 .......... .......... .......... .......... .......... .......... 9661 .......... .......... .......... .......... .......... .......... 9721 .......... .......... .......... .......... .......... .......... 9781 .......... .......... .......... .......... .......... .......... 9841 .......... .......... .......... .......... .......... .......... 9901 .......... .......... .......... .......... .......... .......... 9961 .......... .......... .......... .......... .......... .......... 10021 .......... .......... .......... .......... .......... .......... 10081 .......... .......... .......... .......... .......... .......... 10141 .......... .......... .......... .......... .......... .......... 10201 .......... .......... .......... .......... .......... .......... 10261 .......... .......... .......... .......... .......... .......... 10321 .......... .......... .......... .......... .......... .......... 10381 .......... .......... .......... .......... .......... .......... 10441 .......... .......... .......... .......... .......... .......... 10501 .......... .......... .......... .......... .......... .......... 10561 .......... .......... .......... .......... .......... .......... 10621 .......... .......... .......... .......... .......... .......... 10681 .......... .......... .......... .......... .......... .......... 10741 .......... .......... .......... ||||| // LOCUS (15)-Amnio 10775 bp RNA RNA 09-JAN-1999 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 10775) Corresponding GenBank entry: DIVIDER BASE COUNT 0 a 0 c 0 g 0 t 10775 others ORIGIN 1 |......... .......... .......... .......... .......... .......... 61 .......... .......... .......... .......... .......... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......... .......... .......... .......... 241 .......... .......... .......... .......... .......... .......... 301 .......... .......... .......... .......... .......... .......... 361 .......... .......... .......... .......... .......... .......... 421 .......... .......... .......... .......... .......... .......... 481 .......... .......... .......... .......... .......... .......... 541 .......... .......... .......... .......... .......... .......... 601 .......... .......... .......... .......... .......... .......... 661 .......... .......... .......... .......... .......... .......... 721 .......... .......... .......... .......... .......... .......... 781 .......... .......... .......... .......... .......... .......... 841 .......... .......... .......... .......... .......... .......... 901 .......... .......... .......... .......... .......... .......... 961 .......... .......... .......... .......... .......... .......... 1021 .......... .......... .......... .......... .......... .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .......... .......... .......... .......... .......... 1201 .......... .......... .......... .......... .......... .......... 1261 .......... .......... .......... .......... .......... .......... 1321 .......... .......... .......... .......... .......... .......... 1381 .......... .......... .......... .......... .......... .......... 1441 .......... .......... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... .......... .......... .......... .......... .......... 1621 .......... .......... .......... .......... .......... .......... 1681 .......... .......... .......... .......... .......... .......... 1741 .......... .......... .......... .......... .......... .......... 1801 .......... .......... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .......... .......... 1921 .......... .......... .......... .......... .......... .......... 1981 .......... .......... .......... .......... .......... .......... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... .......... .......... .......... .......... .......... 2161 .......... .......... .......... .......... .......... .......... 2221 .......... .......... .......... .......... .......... .......... 2281 .......... .......... .......... .......... .......... .......... 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... .......... 2701 .......... .......... .......... .......... .......... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... .......... 2881 .......... .......... .......... .......... .......... .......... 2941 .......... .......... .......... .......... .......... .......... 3001 .......... .......... .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .......... .......... 3181 .......... .......... .......... .......... .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .......... .......... .......... 3361 .......... .......... .......... .......... .......... .......... 3421 .......... .......... .......... .......... .......... .......... 3481 .......... .......... .......... .......... .......... .......... 3541 .......... .......... .......... .......... .......... .......... 3601 .......... .......... .......... .......... .......... .......... 3661 .......... .......... .......... .......... .......... .......... 3721 .......... .......... .......... .......... .......... .......... 3781 .....-.... .......... .......... .......... .......... .......... 3841 .......... .......... .......... .......... .......... .......... 3901 .......... .......... .......... .......... .......... .......... 3961 .......... .......... .......... .......... .......... .......... 4021 .......... .......... .......... .......... .......... .......... 4081 .......... .......... .......... .......... .......... .......... 4141 .......... .......... .......... .......... .......... .......... 4201 .......... .......... .......... .......... .......... .......... 4261 .......... .......... .......... .......... .......... .......... 4321 .......... .......... .......... .......... .......... .......... 4381 .......... .......... .......... .......... .......... .......... 4441 .......... .......... .......... .......... .......... .......... 4501 .......... .......... .......... .......... .......... .......... 4561 .......... .......... .......... .......... .......... .......... 4621 .......... .......... .......... .......... .......... .......... 4681 .......... .......... .......... .......... .......... .......... 4741 .......... .......... .......... .......... .......... .......... 4801 .......... .......... .......... ..)....... .......... .......... 4861 .......... .......... .......... .......... .......... .......... 4921 .......... .......... .......... .......... .......... .......... 4981 .......... .......... .......... .......... .......... .......... 5041 .......... .......... .......... .......... .......... .......... 5101 .......... .......... .......... .......... .......... .......... 5161 .......... .......... .......... .......... .......... .......... 5221 .......... .......... .......... .......... .......... .......... 5281 .......... .......... .......... .......... .......... .......... 5341 .......... .......... .......... .......... .......... .......... 5401 .......... .......... .......... .......... .......... .......... 5461 .......... .......... .......... .......... .......... .......... 5521 .......... .......... .......... .......... .......... .......... 5581 .......... .......... .......... .......... .......... .......... 5641 .......... .......... .......... .......... .......... .......... 5701 .......... .......... .......... .......... .......... .......... 5761 .......... .......... .......... .......... .......... .......... 5821 .......... .......... .......... .......... .......... .......... 5881 .......... .......... .......... .......... .......... .......... 5941 .......... .......... .......... .......... .......... .......... 6001 .......... .......... .......... .......... .......... .......... 6061 .......... .......... .......... .......... .......... .......... 6121 .......... .......... .......... .......... .......... .......... 6181 .......... .......... .......... .......... .......... .......... 6241 .......... .......... .......... .......... .......... .......... 6301 .......... .......... .......... .......... .......... .......... 6361 .......... .......... .......... .......... .......... .......... 6421 .......... .......... .......... .......... .......... .......... 6481 .......... .......... .......... .......... .......... .......... 6541 .......... .......... .......... .......... .......... .......... 6601 .......... .......... .......... .......... .......... .......... 6661 .......... .......... .......... .......... .......... .......... 6721 .......... .......... .......... .......... .......... .......... 6781 .......... .......... .......... .......... .......... .......... 6841 .......... .......... .......... .......... .......... .......... 6901 .......... .......... .......... .......... .......... .......... 6961 .......... .......... .......... .......... .......... .......... 7021 .......... .......... .......... .......... .......... .......... 7081 .......... .......... .......... .......... .......... .......... 7141 .......... .......... .......... .......... .......... .......... 7201 .......... .......... .......... .......... .......... .......... 7261 .......... .......... .......... .......... .......... .......... 7321 .......... .......... .......... .......... .......... .......... 7381 .......... .......... .......... .......... .......... .......... 7441 .......... .......... .......... .......... .......... .......... 7501 .......... .......... .......... .......... .......... .......... 7561 .......... .......... .......... .......... .......... .......... 7621 .......... .......... .......... .......... .......... .......... 7681 .......... .......... .......... .......... .......... .......... 7741 .......... .......... .......... .......... .......... .......... 7801 .......... .......... .......... .......... .......... .......... 7861 .......... .......... .......... .......... .......... .......... 7921 .......... .......... .......... .......... .......... .......... 7981 .......... .......... .......... .......... .......... .......... 8041 .......... .......... .......... .......... .......... .......... 8101 .......... .......... .......... .......... .......... .......... 8161 .......... .......... .......... .......... .......... .......... 8221 .......... .......... .......... .......... .......... .......... 8281 .......... .......... .......... .......... .......... .......... 8341 .......... .......... .......... .......... .......... .......... 8401 .......... .......... .......... .......... .......... .......... 8461 .......... .......... .......... .......... .......... .......... 8521 .......... .......... .......... .......... .......... .......... 8581 .......... .......... .......... .......... .......... .......... 8641 .......... .......... .......... .......... .......... .......... 8701 .......... .......... .......... .......... .......... .......... 8761 .......... .......... .......... .......... .......... .......... 8821 .......... .......... .......... .......... .......... .......... 8881 .......... .......... .......... .......... .......... .......... 8941 .......... .......... .......... .......... .......... .......... 9001 .......... .......... .......... .......... .......... .......... 9061 .......... .......... .......... .......... .......... .......... 9121 .......... .......... .......... .......... .......... .......... 9181 .......... .......... .......... .......... .......... .......... 9241 .......... .......... .......... .......... .......... .......... 9301 .......... .......... .......... .......... .......... .......... 9361 .......... .......... .......... .......... .......... .......... 9421 .......... .......... .......... .......... .......... .......... 9481 .......... .......... .......... .......... .......... .......... 9541 .......... .......... .......... .......... .......... .......... 9601 .......... .......... .......... .......... .......... .......... 9661 .......... .......... .......... .......... .......... .......... 9721 .......... .......... .......... .......... .......... .......... 9781 .......... .......... .......... .......... .......... .......... 9841 .......... .......... .......... .......... .......... .......... 9901 .......... .......... .......... .......... .......... .......... 9961 .......... .......... .......... .......... .......... .......... 10021 .......... .......... .......... .......... .......... .......... 10081 .......... .......... .......... .......... .......... .......... 10141 .......... .......... .......... .......... .......... .......... 10201 .......... .......... .......... .......... .......... .......... 10261 .......... .......... .......... .......... .......... .......... 10321 .......... .......... .......... .......... .......... .......... 10381 .......... .......... .......... .......... .......... .......... 10441 .......... .......... .......... .......... .......... .......... 10501 .......... .......... .......... .......... .......... .......... 10561 .......... .......... .......... .......... .......... .......... 10621 .......... .......... .......... .......... .......... .......... 10681 .......... .......... .......... .......... .......... .......... 10741 .......... .......... .......... ||||| // LOCUS (16)-Mamma 10775 bp RNA RNA 09-JAN-1999 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 10775) Corresponding GenBank entry: DIVIDER BASE COUNT 0 a 0 c 0 g 0 t 10775 others ORIGIN 1 |......... .......... .......... .......... .......... .......... 61 .......... .......... .......... .......... .......... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......... .......... .......... .......... 241 .......... .......... .......... .......... .......... .......... 301 .......... .......... .......... .......... .......... .......... 361 .......... .......... .......... .......... .......... .......... 421 .......... .......... .......... .......... .......... .......... 481 .......... .......... .......... .......... .......... .......... 541 .......... .......... .......... .......... .......... .......... 601 .......... .......... .......... .......... .......... .......... 661 .......... .......... .......... .......... .......... .......... 721 .......... .......... .......... .......... .......... .......... 781 .......... .......... .......... .......... .......... .......... 841 .......... .......... .......... .......... .......... .......... 901 .......... .......... .......... .......... .......... .......... 961 .......... .......... .......... .......... .......... .......... 1021 .......... .......... .......... .......... .......... .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .......... .......... .......... .......... .......... 1201 .......... .......... .......... .......... .......... .......... 1261 .......... .......... .......... .......... .......... .......... 1321 .......... .......... .......... .......... .......... .......... 1381 .......... .......... .......... .......... .......... .......... 1441 .......... .......... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... .......... .......... .......... .......... .......... 1621 .......... .......... .......... .......... .......... .......... 1681 .......... .......... .......... .......... .......... .......... 1741 .......... .......... .......... .......... .......... .......... 1801 .......... .......... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .......... .......... 1921 .......... .......... .......... .......... .......... .......... 1981 .......... .......... .......... .......... .......... .......... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... .......... .......... .......... .......... .......... 2161 .......... .......... .......... .......... .......... .......... 2221 .......... .......... .......... .......... .......... .......... 2281 .......... .......... .......... .......... .......... .......... 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... .......... 2701 .......... .......... .......... .......... .......... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... .......... 2881 .......... .......... .......... .......... .......... .......... 2941 .......... .......... .......... .......... .......... .......... 3001 .......... .......... .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .......... .......... 3181 .......... .......... .......... .......... .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .......... .......... .......... 3361 .......... .......... .......... .......... .......... .......... 3421 .......... .......... .......... .......... .......... .......... 3481 .......... .......... .......... .......... .......... .......... 3541 .......... .......... .......... .......... .......... .......... 3601 .......... .......... .......... .......... .......... .......... 3661 .......... .......... .......... .......... .......... .......... 3721 .......... .......... .......... .......... .......... .......... 3781 .....-.... .......... .......... .......... .......... .......... 3841 .......... .......... .......... .......... .......... .......... 3901 .......... .......... .......... .......... .......... .......... 3961 .......... .......... .......... .......... .......... .......... 4021 .......... .......... .......... .......... .......... .......... 4081 .......... .......... .......... .......... .......... .......... 4141 .......... .......... .......... .......... .......... .......... 4201 .......... .......... .......... .......... .......... .......... 4261 .......... .......... .......... .......... .......... .......... 4321 .......... .......... .......... .......... .......... .......... 4381 .......... .......... .......... .......... .......... .......... 4441 .......... .......... .......... .......... .......... .......... 4501 .......... .......... .......... .......... .......... .......... 4561 .......... .......... .......... .......... .......... .......... 4621 .......... .......... .......... .......... .......... .......... 4681 .......... .......... .......... .......... .......... .......... 4741 .......... .......... .......... .......... .......... .......... 4801 .......... .......... .......... ..)....... .......... .......... 4861 .......... .......... .......... .......... .......... .......... 4921 .......... .......... .......... .......... .......... .......... 4981 .......... .......... .......... .......... .......... .......... 5041 .......... .......... .......... .......... .......... .......... 5101 .......... .......... .......... .......... .......... .......... 5161 .......... .......... .......... .......... .......... .......... 5221 .......... .......... .......... .......... .......... .......... 5281 .......... .......... .......... .......... .......... .......... 5341 .......... .......... .......... .......... .......... .......... 5401 .......... .......... .......... .......... .......... .......... 5461 .......... .......... .......... .......... .......... .......... 5521 .......... .......... .......... .......... .......... .......... 5581 .......... .......... .......... .......... .......... .......... 5641 .......... .......... .......... .......... .......... .......... 5701 .......... .......... .......... .......... .......... .......... 5761 .......... .......... .......... .......... .......... .......... 5821 .......... .......... .......... .......... .......... .......... 5881 .......... .......... .......... .......... .......... .......... 5941 .......... .......... .......... .......... .......... .......... 6001 .......... .......... .......... .......... .......... .......... 6061 .......... .......... .......... .......... .......... .......... 6121 .......... .......... .......... .......... .......... .......... 6181 .......... .......... .......... .......... .......... .......... 6241 .......... .......... .......... .......... .......... .......... 6301 .......... .......... .......... .......... .......... .......... 6361 .......... .......... .......... .......... .......... .......... 6421 .......... .......... .......... .......... .......... .......... 6481 .......... .......... .......... .......... .......... .......... 6541 .......... .......... .......... .......... .......... .......... 6601 .......... .......... .......... .......... .......... .......... 6661 .......... .......... .......... .......... .......... .......... 6721 .......... .......... .......... .......... .......... .......... 6781 .......... .......... .......... .......... .......... .......... 6841 .......... .......... .......... .......... .......... .......... 6901 .......... .......... .......... .......... .......... .......... 6961 .......... .......... .......... .......... .......... .......... 7021 .......... .......... .......... .......... .......... .......... 7081 .......... .......... .......... .......... .......... .......... 7141 .......... .......... .......... .......... .......... .......... 7201 .......... .......... .......... .......... .......... .......... 7261 .......... .......... .......... .......... .......... .......... 7321 .......... .......... .......... .......... .......... .......... 7381 .......... .......... .......... .......... .......... .......... 7441 .......... .......... .......... .......... .......... .......... 7501 .......... .......... .......... .......... .......... .......... 7561 .......... .......... .......... .......... .......... .......... 7621 .......... .......... .......... .......... .......... .......... 7681 .......... .......... .......... .......... .......... .......... 7741 .......... .......... .......... .......... .......... .......... 7801 .......... .......... .......... .......... .......... .......... 7861 .......... .......... .......... .......... .......... .......... 7921 .......... .......... .......... .......... .......... .......... 7981 .......... .......... .......... .......... .......... .......... 8041 .......... .......... .......... .......... .......... .......... 8101 .......... .......... .......... .......... .......... .......... 8161 .......... .......... .......... .......... .......... .......... 8221 .......... .......... .......... .......... .......... .......... 8281 .......... .......... .......... .......... .......... .......... 8341 .......... .......... .......... .......... .......... .......... 8401 .......... .......... .......... .......... .......... .......... 8461 .......... .......... .......... .......... .......... .......... 8521 .......... .......... .......... .......... .......... .......... 8581 .......... .......... .......... .......... .......... .......... 8641 .......... .......... .......... .......... .......... .......... 8701 .......... .......... .......... .......... .......... .......... 8761 .......... .......... .......... .......... .......... .......... 8821 .......... .......... .......... .......... .......... .......... 8881 .......... .......... .......... .......... .......... .......... 8941 .......... .......... .......... .......... .......... .......... 9001 .......... .......... .......... .......... .......... .......... 9061 .......... .......... .......... .......... .......... .......... 9121 .......... .......... .......... .......... .......... .......... 9181 .......... .......... .......... .......... .......... .......... 9241 .......... .......... .......... .......... .......... .......... 9301 .......... .......... .......... .......... .......... .......... 9361 .......... .......... .......... .......... .......... .......... 9421 .......... .......... .......... .......... .......... .......... 9481 .......... .......... .......... .......... .......... .......... 9541 .......... .......... .......... .......... .......... .......... 9601 .......... .......... .......... .......... .......... .......... 9661 .......... .......... .......... .......... .......... .......... 9721 .......... .......... .......... .......... .......... .......... 9781 .......... .......... .......... .......... .......... .......... 9841 .......... .......... .......... .......... .......... .......... 9901 .......... .......... .......... .......... .......... .......... 9961 .......... .......... .......... .......... .......... .......... 10021 .......... .......... .......... .......... .......... .......... 10081 .......... .......... .......... .......... .......... .......... 10141 .......... .......... .......... .......... .......... .......... 10201 .......... .......... .......... .......... .......... .......... 10261 .......... .......... .......... .......... .......... .......... 10321 .......... .......... .......... .......... .......... .......... 10381 .......... .......... .......... .......... .......... .......... 10441 .......... .......... .......... .......... .......... .......... 10501 .......... .......... .......... .......... .......... .......... 10561 .......... .......... .......... .......... .......... .......... 10621 .......... .......... .......... .......... .......... .......... 10681 .......... .......... .......... .......... .......... .......... 10741 .......... .......... .......... ||||| // LOCUS (17)-Proto 10775 bp RNA RNA 09-JAN-1999 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 10775) Corresponding GenBank entry: DIVIDER BASE COUNT 0 a 0 c 0 g 0 t 10775 others ORIGIN 1 |......... .......... .......... .......... .......... .......... 61 .......... .......... .......... .......... .......... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......... .......... .......... .......... 241 .......... .......... .......... .......... .......... .......... 301 .......... .......... .......... .......... .......... .......... 361 .......... .......... .......... .......... .......... .......... 421 .......... .......... .......... .......... .......... .......... 481 .......... .......... .......... .......... .......... .......... 541 .......... .......... .......... .......... .......... .......... 601 .......... .......... .......... .......... .......... .......... 661 .......... .......... .......... .......... .......... .......... 721 .......... .......... .......... .......... .......... .......... 781 .......... .......... .......... .......... .......... .......... 841 .......... .......... .......... .......... .......... .......... 901 .......... .......... .......... .......... .......... .......... 961 .......... .......... .......... .......... .......... .......... 1021 .......... .......... .......... .......... .......... .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .......... .......... .......... .......... .......... 1201 .......... .......... .......... .......... .......... .......... 1261 .......... .......... .......... .......... .......... .......... 1321 .......... .......... .......... .......... .......... .......... 1381 .......... .......... .......... .......... .......... .......... 1441 .......... .......... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... .......... .......... .......... .......... .......... 1621 .......... .......... .......... .......... .......... .......... 1681 .......... .......... .......... .......... .......... .......... 1741 .......... .......... .......... .......... .......... .......... 1801 .......... .......... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .......... .......... 1921 .......... .......... .......... .......... .......... .......... 1981 .......... .......... .......... .......... .......... .......... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... .......... .......... .......... .......... .......... 2161 .......... .......... .......... .......... .......... .......... 2221 .......... .......... .......... .......... .......... .......... 2281 .......... .......... .......... .......... .......... .......... 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... .......... 2701 .......... .......... .......... .......... .......... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... .......... 2881 .......... .......... .......... .......... .......... .......... 2941 .......... .......... .......... .......... .......... .......... 3001 .......... .......... .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .......... .......... 3181 .......... .......... .......... .......... .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .......... .......... .......... 3361 .......... .......... .......... .......... .......... .......... 3421 .......... .......... .......... .......... .......... .......... 3481 .......... .......... .......... .......... .......... .......... 3541 .......... .......... .......... .......... .......... .......... 3601 .......... .......... .......... .......... .......... .......... 3661 .......... .......... .......... .......... .......... .......... 3721 .......... .......... .......... .......... .......... .......... 3781 .....-.... .......... .......... .......... .......... .......... 3841 .......... .......... .......... .......... .......... .......... 3901 .......... .......... .......... .......... .......... .......... 3961 .......... .......... .......... .......... .......... .......... 4021 .......... .......... .......... .......... .......... .......... 4081 .......... .......... .......... .......... .......... .......... 4141 .......... .......... .......... .......... .......... .......... 4201 .......... .......... .......... .......... .......... .......... 4261 .......... .......... .......... .......... .......... .......... 4321 .......... .......... .......... .......... .......... .......... 4381 .......... .......... .......... .......... .......... .......... 4441 .......... .......... .......... .......... .......... .......... 4501 .......... .......... .......... .......... .......... .......... 4561 .......... .......... .......... .......... .......... .......... 4621 .......... .......... .......... .......... .......... .......... 4681 .......... .......... .......... .......... .......... .......... 4741 .......... .......... .......... .......... .......... .......... 4801 .......... .......... .......... ..)....... .......... .......... 4861 .......... .......... .......... .......... .......... .......... 4921 .......... .......... .......... .......... .......... .......... 4981 .......... .......... .......... .......... .......... .......... 5041 .......... .......... .......... .......... .......... .......... 5101 .......... .......... .......... .......... .......... .......... 5161 .......... .......... .......... .......... .......... .......... 5221 .......... .......... .......... .......... .......... .......... 5281 .......... .......... .......... .......... .......... .......... 5341 .......... .......... .......... .......... .......... .......... 5401 .......... .......... .......... .......... .......... .......... 5461 .......... .......... .......... .......... .......... .......... 5521 .......... .......... .......... .......... .......... .......... 5581 .......... .......... .......... .......... .......... .......... 5641 .......... .......... .......... .......... .......... .......... 5701 .......... .......... .......... .......... .......... .......... 5761 .......... .......... .......... .......... .......... .......... 5821 .......... .......... .......... .......... .......... .......... 5881 .......... .......... .......... .......... .......... .......... 5941 .......... .......... .......... .......... .......... .......... 6001 .......... .......... .......... .......... .......... .......... 6061 .......... .......... .......... .......... .......... .......... 6121 .......... .......... .......... .......... .......... .......... 6181 .......... .......... .......... .......... .......... .......... 6241 .......... .......... .......... .......... .......... .......... 6301 .......... .......... .......... .......... .......... .......... 6361 .......... .......... .......... .......... .......... .......... 6421 .......... .......... .......... .......... .......... .......... 6481 .......... .......... .......... .......... .......... .......... 6541 .......... .......... .......... .......... .......... .......... 6601 .......... .......... .......... .......... .......... .......... 6661 .......... .......... .......... .......... .......... .......... 6721 .......... .......... .......... .......... .......... .......... 6781 .......... .......... .......... .......... .......... .......... 6841 .......... .......... .......... .......... .......... .......... 6901 .......... .......... .......... .......... .......... .......... 6961 .......... .......... .......... .......... .......... .......... 7021 .......... .......... .......... .......... .......... .......... 7081 .......... .......... .......... .......... .......... .......... 7141 .......... .......... .......... .......... .......... .......... 7201 .......... .......... .......... .......... .......... .......... 7261 .......... .......... .......... .......... .......... .......... 7321 .......... .......... .......... .......... .......... .......... 7381 .......... .......... .......... .......... .......... .......... 7441 .......... .......... .......... .......... .......... .......... 7501 .......... .......... .......... .......... .......... .......... 7561 .......... .......... .......... .......... .......... .......... 7621 .......... .......... .......... .......... .......... .......... 7681 .......... .......... .......... .......... .......... .......... 7741 .......... .......... .......... .......... .......... .......... 7801 .......... .......... .......... .......... .......... .......... 7861 .......... .......... .......... .......... .......... .......... 7921 .......... .......... .......... .......... .......... .......... 7981 .......... .......... .......... .......... .......... .......... 8041 .......... .......... .......... .......... .......... .......... 8101 .......... .......... .......... .......... .......... .......... 8161 .......... .......... .......... .......... .......... .......... 8221 .......... .......... .......... .......... .......... .......... 8281 .......... .......... .......... .......... .......... .......... 8341 .......... .......... .......... .......... .......... .......... 8401 .......... .......... .......... .......... .......... .......... 8461 .......... .......... .......... .......... .......... .......... 8521 .......... .......... .......... .......... .......... .......... 8581 .......... .......... .......... .......... .......... .......... 8641 .......... .......... .......... .......... .......... .......... 8701 .......... .......... .......... .......... .......... .......... 8761 .......... .......... .......... .......... .......... .......... 8821 .......... .......... .......... .......... .......... .......... 8881 .......... .......... .......... .......... .......... .......... 8941 .......... .......... .......... .......... .......... .......... 9001 .......... .......... .......... .......... .......... .......... 9061 .......... .......... .......... .......... .......... .......... 9121 .......... .......... .......... .......... .......... .......... 9181 .......... .......... .......... .......... .......... .......... 9241 .......... .......... .......... .......... .......... .......... 9301 .......... .......... .......... .......... .......... .......... 9361 .......... .......... .......... .......... .......... .......... 9421 .......... .......... .......... .......... .......... .......... 9481 .......... .......... .......... .......... .......... .......... 9541 .......... .......... .......... .......... .......... .......... 9601 .......... .......... .......... .......... .......... .......... 9661 .......... .......... .......... .......... .......... .......... 9721 .......... .......... .......... .......... .......... .......... 9781 .......... .......... .......... .......... .......... .......... 9841 .......... .......... .......... .......... .......... .......... 9901 .......... .......... .......... .......... .......... .......... 9961 .......... .......... .......... .......... .......... .......... 10021 .......... .......... .......... .......... .......... .......... 10081 .......... .......... .......... .......... .......... .......... 10141 .......... .......... .......... .......... .......... .......... 10201 .......... .......... .......... .......... .......... .......... 10261 .......... .......... .......... .......... .......... .......... 10321 .......... .......... .......... .......... .......... .......... 10381 .......... .......... .......... .......... .......... .......... 10441 .......... .......... .......... .......... .......... .......... 10501 .......... .......... .......... .......... .......... .......... 10561 .......... .......... .......... .......... .......... .......... 10621 .......... .......... .......... .......... .......... .......... 10681 .......... .......... .......... .......... .......... .......... 10741 .......... .......... .......... ||||| // LOCUS mt.O.anati 10775 bp RNA RNA 29-JUL-1996 DEFINITION Mitochondrion Ornithorhynchus anatinus.; ATP synthase subunit 6; ATP synthase subunit 8; cytochrome b; cytochrome c oxidase subunit 1; cytochrome c oxidase subunit 2; cytochrome c oxidase subunit 3; NADH dehydrogenase subunit 1; NADH dehydrogenase subunit 2; NADH dehydrogenase subunit 3; NADH dehydrogenase subunit 4; NADH dehydrogenase subunit 4L; NADH dehydrogenase subunit 5; NADH dehydrogenase subunit 6. ACCESSION X83427 KEYWORDS ATP synthase subunit 6; ATP synthase subunit 8; cytochrome b; cytochrome c oxidase subunit 1; cytochrome c oxidase subunit 2; cytochrome c oxidase subunit 3; NADH dehydrogenase subunit 1; NADH dehydrogenase subunit 2; NADH dehydrogenase subunit 3; NADH dehydrogenase subunit 4; NADH dehydrogenase subunit 4L; NADH dehydrogenase subunit 5; NADH dehydrogenase subunit 6. SOURCE Mitochondrion Ornithorhynchus anatinus. ORGANISM Mitochondrion Ornithorhynchus anatinus. REFERENCE 1 (bases 1 to 17019) AUTHORS Janke,A., Gemmell,N., Feldmaier-Fuchs,G., von Haeseler,A. and Paabo,S. TITLE The mitochondrial genome of a monotreme, Platypus (Ornitorhynchus anatinus) JOURNAL Unpublished STANDARD No information REFERENCE 2 (bases 1 to 17019) AUTHORS Janke,A. TITLE Direct Submission JOURNAL Submitted (13-DEC-1994) A. Janke, Zoologisches Institut der Univ. Munich, Luisenstrasse 14, 80333 Munich, FRG STANDARD No information COMMENTS Sequence information (bases 1 to 10775) Corresponding GenBank entry: X83427 BASE COUNT 564 a 311 c 260 g 427 t 9213 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~G C--------- ------CAAC 301 |UCU--AGC| CCA------- -|-------- ---------- ---------- ---------- 361 ---------- -|-------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---<-aauua aucuuaauac acauauaaac ucuaau---- 601 ---------- ---------- ---------- ---------- ---------- ---------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 ---------- ---------- ---------- ---------- ---------- ---------- 781 ---------- ---------- ---------- -------->- ---------- |-----AAAC 841 UAA(AACA)U UUU------- ---------- ---------- -----aa--- ---cgcuaac 901 ccc------- ---------- |------UA- -GUAU-A(-G GAGA)UAGAA ---------- 961 -------<-a aggaaau--- ---------- ---------- ---------- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- --->------ 1201 ---------- ---------- ---------- ---------< ---------- ---------- 1261 ---------- ---------- ---------> (------)-- ---------- ---|-(---) 1321 ---------- ---------- ---------- ---------- ---------- ---------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- ---------- ---------- ---------- 1561 ---------- ---------- ---------- ---------- ---------- ---------- 1621 ---------- U-GGAGCCUU AGAC-AU--- ---AGUACU( -GUGA-)AGG ---AAA-AA- 1681 UGaaagauua gcuu------ ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- -----aaa-G C-AAAA GCCAGG---- --------<- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------> (--auuuaac 2041 --)------- -----CCU-G UACCUU(UU- GCAUA)AUGG |UUU-AGCUA GAaaacuua- 2101 uauacaaag- ---------- -------(-- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- -)-------- ---------- 2521 ---------- ------<--- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- -aau->---- --(------) ---------- ---------- -uuuaauaua 2701 -aa-auCCCG AA-ACUAG-A UG-AGCUACU AUc-GAG-CA AUUU------ ---------- 2761 -(-------- ---------- ---------- ---------- -----auua) ---------- 2821 -GAAUCAA-C CC-GUCUAU( GUUGCAA-A) AUAG-UGGGA --UGACUUu- AUAGUAG-aG 2881 GU(G-AAAA) AUC-AACC-G G-ACCUAGUG AUAGCU-GGU UAGCC--AAA AA-ACG-AAU 2941 (-UUAA)GUU CA-AC-AAUA AGUU------ ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 --------|- ---------- ---------- ---------- ---------< ----uauuuc 3121 cuga-----u auacuauauu aaccaua--- ---------- ---------- ---------- 3181 ----a----- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---->----- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ------AC-U -UAUA-AGUU AUUCA--UA- AG-AG(-GGU 3481 CAG)CCCUUA UG-AA----u --aAGG(AAA -CAA)CCU-c uaaUA-G-AG -GG-AAA--- 3541 --uuuauucu uauuuac--- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- -<-------- ---------- ---------- 3721 ---------- ---------- ---------- ---------- -->AUAGU-A GGC(CUAAAA 3781 GC-A)-GCCA -UCAA|U(U- AA)A|aAAGC G(--UUAAAG )CU|-uaa-- -------------- -------|-- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- ---------- 4021 ---------- ---------- ---------- ---------- ---------- ---------- 4081 ---------- aCUA--CCC| C--U-Aa|-- --------aa uaaua----- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- ---------- ---------- ---------- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- -UUGG-CU|- UA-AUCUAUg u--------- 4501 ---------- ---------- (cccc---)< ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ------->-- ---------- ---------| -AUAGAAGAA AUAAUGC-UA 4681 AA|AUAAGUA -AACC-AGA- ---------- (auuu----- ---------- ---------- 4741 ---------- -----)---- ------|auu c-uccauGCA CUA--gcuua a|----auua 4801 g-aac---gg ---------- ----(--agc au)c-c|-a- cuaaua---- ---------- 4861 ---auuaa-- -cagc----- ---------- ---------- ---------- -------<-u 4921 aaauaaucau aaauauuaac uagaaaca-- --uuauuuua uaa------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ------|--- ---------- |--------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ---------- ---------- 5221 ---------- ---------- ---------- ---------- ---------- ---------- 5281 ---------- ---------- ---------- ---------- ---------- ---------- 5341 ---------- ---------- ---------- ---------- ---------- ---------- 5401 ---------- ---------- ---------- ---------- ---------- ---------- 5461 ---------- ---------- ---|------ ---------- ---------- ---------- 5521 |--------- ---------- ---------- ---------- ---------- ---------- 5581 --<------- ---------- ---------- ---------- ---------- ---------- 5641 ---------- ---------- ------->-- ---------- ---------- ---<------ 5701 ---------- ---------- ---------- ---------- ---------- ---------- 5761 ---------- ---------- ---------- ---------- ---------- ---------- 5821 ---------- ---------- ---------- ---------- ---------- ---------- 5881 ---------- ---------- ---------- ---------- ---------- ---------- 5941 ---------- ---------- ---------- ---------- ---------- ---------- 6001 ---------- ---------- ---------- ---------- ---------- ---------- 6061 ---------- ---------- ---------- ---------- ---------- ---------- 6121 ---------- ---------- ---------- ---------- ---------- ---------- 6181 ---------- ---------- ---------- ---------- ---------- ---------- 6241 ---------- ---------- ---------- ---------- ---------- ---------- 6301 ---------- ---------- ---------- ---------- ---------- ---------- 6361 ---------- ---------- ---------- ---------- ---------- ---------- 6421 ---------- ---------- ------>--- ---------- ---------- -acug--|-- 6481 -u-UAACCC- -(GACACA)G G|AGUGC--A UCU-(AAGGA A-----)-AG AUu--aa--| 6541 |--------- ---AA-GGAG -UAAA-AGGA ACUCGGCAAA ---------- ---------- 6601 ---------- ---------- ---------- ---------- ---------- ---------- 6661 ---------- ---------- ---------- ---------- ---------- ---------- 6721 ---------- ---------- ---------- ---------- ---------- ---------- 6781 ------(--- )--------c uaGGAUUU|C GC---CUG-U UU(ACCAA)A AA-CAUc-GC 6841 CUCUAG|C-- ---------- ---------- (auaacaa-- ------)--- ---------- 6901 ------GUA- UUA-GAGGUC CUGCCU<--- ---------- ---------- ---------- 6961 ---------- ---------- -------->G CC-CA-GU|G AU-------- ---------- 7021 ---------- --(------- ---------- ---------- ---------- ---------- 7081 ---------- ---------- ---------- ucu)------ ---------- ---------| 7141 ---AUUA-AA C-|GG-C|-C -GCGGU-(AU -CCUG)ACCG UG|C(AAA)- GG-UAGCAUA 7201 AUC-AU-U-U |GUCUCC(-U AAUU-)AGAG AC|UA-GUAU GAAUGGCUAG A-CGAAAAUC 7261 CA-------- ---------- -------ACU GUCUCUUACU CCCa-au-ca ----GUGAAA 7321 UU|G|CCCUC CC-CG(U-GC AGAGA)CGGG GAU----AAC ACCAUAAGAC GAGAAG-ACC 7381 CUGUGG-|-A GCUUU--AAU CA|--u-aga uuu--au--| <--------- ---------- 7441 ---------- ---------- --->------ ---------- ---------- ---------- 7501 ---------- ---------- ---------- --<-ucuuuu uca--uacag ac-cc-a-aa 7561 ag-cuca-ac accuu-aaga a--------- ---------- ---------- ---------- 7621 ---------- ---------- ---------> --(------- -)-------- ---------- 7681 ---------- -------|-- ---------- ---------- ---------- ---------- 7741 -----(---- ----)----- ---------- ---------- ---------- --------<- 7801 ---------- ---------- ---------- ---------- ---------- ---------- 7861 ---------- ---------- ---------- ---------- ---------- ---------- 7921 ---------- ---------- ---------- ---------- ---------- ---------- 7981 ---------- ---------- ---------- ---------- ---------- ---------- 8041 ---------- ---------- ---------- ---------- ---------- ---------- 8101 ---------- ---------- ----->---- uuuuu-u-ca -ac---U-GA UUUUGGUUG( 8161 GGG)UG-AC- C|UCGGAG(- --------UA CAACAAAAC- )CUCU-GA|a |u|gca--|< 8221 ---------- ---------- ---------- ---------- ---------- ---------- 8281 ---------- ---------- ---------- ---------- ---------- ---------- 8341 ---------- ---------- ---------- ---------- ---------- ->-------- 8401 ---------- ------<--- ---------- ---------- ---------- ---------- 8461 ---------- ---------- ---------- ---------- ---------- ---------- 8521 ---------- ---------- ---------- ---------- ---------- ---------- 8581 ---------- ---------- ---------- ---------- ---------- ---------- 8641 ---------- ---------> (--------- )--------- ---------- ---------- 8701 ---------- ---------- ---------- -------|-- (-|-----)- ---------- 8761 -----u---a guaau-aac( -uuacaa--- )guuua-aac gcaaaacu-- ---------- 8821 ---------- ---------- ---------- ---------- ---------- ------gcca 8881 -|---guaAU AGACC-CAA- ---------- ---------- ---(------ ---------- 8941 ---------- ---------- ---------- ---------- --------au ua)--|---- 9001 UUGAUCAAA- |GGA-CCAAG UUACCC|CAG G|GAUAACAG |C-GCA-A-U CCUAUUCAAG 9061 AG(U--UCAU )AUCGACAAU --AGGGUUUA CG-ACCUCGA UGUU|GG--A U|C|AGGAC- 9121 AU-CC-AAAU GG-UG(--CA -GC)CGCUAU Uaau-GGU|U CGUU(UGUUC )AACGA-UUA 9181 A--AGUCCU- --ACGUGAUC UGAGUUCAGA CC|GG-A(GU AA)UCCAGGU CGGUUUCUAU 9241 CU|AUGG--- --|-|<---- ---------- ---------- ---------- -----gua-- 9301 >--------- ---------- --a-uUU-CU CC--(UAGU- AC(GGAAA)G GACC-)AGAG 9361 A--AA-<--- ---------- ---------- -------u>- caggccaauc uu-------- 9421 ---------- -------<-- ---------- ---------- ---------- ---------- 9481 ---------- ---------- ---------- ---------- ---------- ---aaaaag> 9541 ---------- ---------- aagc-cucca acuuaa---- ---------- ---------- 9601 ---------- -----caaau (gauuuc-au cucaa)--uu -ug------- ---------- 9661 ---------- ---------| ------(--- )--------- -------|au 9961 cc-(uagacc a--)-ggaau ucu~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10021 ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~~~ 10141 ~~~~~~~~~~ ~~~~~~~~~~ ~)~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10201 ~~~~~~~~~~ ~|~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10321 ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 10741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ||||| // LOCUS (17)-Theri 10775 bp RNA RNA 09-JAN-1999 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 10775) Corresponding GenBank entry: DIVIDER BASE COUNT 0 a 0 c 0 g 0 t 10775 others ORIGIN 1 |......... .......... .......... .......... .......... .......... 61 .......... .......... .......... .......... .......... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......... .......... .......... .......... 241 .......... .......... .......... .......... .......... .......... 301 .......... .......... .......... .......... .......... .......... 361 .......... .......... .......... .......... .......... .......... 421 .......... .......... .......... .......... .......... .......... 481 .......... .......... .......... .......... .......... .......... 541 .......... .......... .......... .......... .......... .......... 601 .......... .......... .......... .......... .......... .......... 661 .......... .......... .......... .......... .......... .......... 721 .......... .......... .......... .......... .......... .......... 781 .......... .......... .......... .......... .......... .......... 841 .......... .......... .......... .......... .......... .......... 901 .......... .......... .......... .......... .......... .......... 961 .......... .......... .......... .......... .......... .......... 1021 .......... .......... .......... .......... .......... .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .......... .......... .......... .......... .......... 1201 .......... .......... .......... .......... .......... .......... 1261 .......... .......... .......... .......... .......... .......... 1321 .......... .......... .......... .......... .......... .......... 1381 .......... .......... .......... .......... .......... .......... 1441 .......... .......... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... .......... .......... .......... .......... .......... 1621 .......... .......... .......... .......... .......... .......... 1681 .......... .......... .......... .......... .......... .......... 1741 .......... .......... .......... .......... .......... .......... 1801 .......... .......... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .......... .......... 1921 .......... .......... .......... .......... .......... .......... 1981 .......... .......... .......... .......... .......... .......... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... .......... .......... .......... .......... .......... 2161 .......... .......... .......... .......... .......... .......... 2221 .......... .......... .......... .......... .......... .......... 2281 .......... .......... .......... .......... .......... .......... 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... .......... 2701 .......... .......... .......... .......... .......... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... .......... 2881 .......... .......... .......... .......... .......... .......... 2941 .......... .......... .......... .......... .......... .......... 3001 .......... .......... .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .......... .......... 3181 .......... .......... .......... .......... .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .......... .......... .......... 3361 .......... .......... .......... .......... .......... .......... 3421 .......... .......... .......... .......... .......... .......... 3481 .......... .......... .......... .......... .......... .......... 3541 .......... .......... .......... .......... .......... .......... 3601 .......... .......... .......... .......... .......... .......... 3661 .......... .......... .......... .......... .......... .......... 3721 .......... .......... .......... .......... .......... .......... 3781 .....-.... .......... .......... .......... .......... .......... 3841 .......... .......... .......... .......... .......... .......... 3901 .......... .......... .......... .......... .......... .......... 3961 .......... .......... .......... .......... .......... .......... 4021 .......... .......... .......... .......... .......... .......... 4081 .......... .......... .......... .......... .......... .......... 4141 .......... .......... .......... .......... .......... .......... 4201 .......... .......... .......... .......... .......... .......... 4261 .......... .......... .......... .......... .......... .......... 4321 .......... .......... .......... .......... .......... .......... 4381 .......... .......... .......... .......... .......... .......... 4441 .......... .......... .......... .......... .......... .......... 4501 .......... .......... .......... .......... .......... .......... 4561 .......... .......... .......... .......... .......... .......... 4621 .......... .......... .......... .......... .......... .......... 4681 .......... .......... .......... .......... .......... .......... 4741 .......... .......... .......... .......... .......... .......... 4801 .......... .......... .......... ..)....... .......... .......... 4861 .......... .......... .......... .......... .......... .......... 4921 .......... .......... .......... .......... .......... .......... 4981 .......... .......... .......... .......... .......... .......... 5041 .......... .......... .......... .......... .......... .......... 5101 .......... .......... .......... .......... .......... .......... 5161 .......... .......... .......... .......... .......... .......... 5221 .......... .......... .......... .......... .......... .......... 5281 .......... .......... .......... .......... .......... .......... 5341 .......... .......... .......... .......... .......... .......... 5401 .......... .......... .......... .......... .......... .......... 5461 .......... .......... .......... .......... .......... .......... 5521 .......... .......... .......... .......... .......... .......... 5581 .......... .......... .......... .......... .......... .......... 5641 .......... .......... .......... .......... .......... .......... 5701 .......... .......... .......... .......... .......... .......... 5761 .......... .......... .......... .......... .......... .......... 5821 .......... .......... .......... .......... .......... .......... 5881 .......... .......... .......... .......... .......... .......... 5941 .......... .......... .......... .......... .......... .......... 6001 .......... .......... .......... .......... .......... .......... 6061 .......... .......... .......... .......... .......... .......... 6121 .......... .......... .......... .......... .......... .......... 6181 .......... .......... .......... .......... .......... .......... 6241 .......... .......... .......... .......... .......... .......... 6301 .......... .......... .......... .......... .......... .......... 6361 .......... .......... .......... .......... .......... .......... 6421 .......... .......... .......... .......... .......... .......... 6481 .......... .......... .......... .......... .......... .......... 6541 .......... .......... .......... .......... .......... .......... 6601 .......... .......... .......... .......... .......... .......... 6661 .......... .......... .......... .......... .......... .......... 6721 .......... .......... .......... .......... .......... .......... 6781 .......... .......... .......... .......... .......... .......... 6841 .......... .......... .......... .......... .......... .......... 6901 .......... .......... .......... .......... .......... .......... 6961 .......... .......... .......... .......... .......... .......... 7021 .......... .......... .......... .......... .......... .......... 7081 .......... .......... .......... .......... .......... .......... 7141 .......... .......... .......... .......... .......... .......... 7201 .......... .......... .......... .......... .......... .......... 7261 .......... .......... .......... .......... .......... .......... 7321 .......... .......... .......... .......... .......... .......... 7381 .......... .......... .......... .......... .......... .......... 7441 .......... .......... .......... .......... .......... .......... 7501 .......... .......... .......... .......... .......... .......... 7561 .......... .......... .......... .......... .......... .......... 7621 .......... .......... .......... .......... .......... .......... 7681 .......... .......... .......... .......... .......... .......... 7741 .......... .......... .......... .......... .......... .......... 7801 .......... .......... .......... .......... .......... .......... 7861 .......... .......... .......... .......... .......... .......... 7921 .......... .......... .......... .......... .......... .......... 7981 .......... .......... .......... .......... .......... .......... 8041 .......... .......... .......... .......... .......... .......... 8101 .......... .......... .......... .......... .......... .......... 8161 .......... .......... .......... .......... .......... .......... 8221 .......... .......... .......... .......... .......... .......... 8281 .......... .......... .......... .......... .......... .......... 8341 .......... .......... .......... .......... .......... .......... 8401 .......... .......... .......... .......... .......... .......... 8461 .......... .......... .......... .......... .......... .......... 8521 .......... .......... .......... .......... .......... .......... 8581 .......... .......... .......... .......... .......... .......... 8641 .......... .......... .......... .......... .......... .......... 8701 .......... .......... .......... .......... .......... .......... 8761 .......... .......... .......... .......... .......... .......... 8821 .......... .......... .......... .......... .......... .......... 8881 .......... .......... .......... .......... .......... .......... 8941 .......... .......... .......... .......... .......... .......... 9001 .......... .......... .......... .......... .......... .......... 9061 .......... .......... .......... .......... .......... .......... 9121 .......... .......... .......... .......... .......... .......... 9181 .......... .......... .......... .......... .......... .......... 9241 .......... .......... .......... .......... .......... .......... 9301 .......... .......... .......... .......... .......... .......... 9361 .......... .......... .......... .......... .......... .......... 9421 .......... .......... .......... .......... .......... .......... 9481 .......... .......... .......... .......... .......... .......... 9541 .......... .......... .......... .......... .......... .......... 9601 .......... .......... .......... .......... .......... .......... 9661 .......... .......... .......... .......... .......... .......... 9721 .......... .......... .......... .......... .......... .......... 9781 .......... .......... .......... .......... .......... .......... 9841 .......... .......... .......... .......... .......... .......... 9901 .......... .......... .......... .......... .......... .......... 9961 .......... .......... .......... .......... .......... .......... 10021 .......... .......... .......... .......... .......... .......... 10081 .......... .......... .......... .......... .......... .......... 10141 .......... .......... .......... .......... .......... .......... 10201 .......... .......... .......... .......... .......... .......... 10261 .......... .......... .......... .......... .......... .......... 10321 .......... .......... .......... .......... .......... .......... 10381 .......... .......... .......... .......... .......... .......... 10441 .......... .......... .......... .......... .......... .......... 10501 .......... .......... .......... .......... .......... .......... 10561 .......... .......... .......... .......... .......... .......... 10621 .......... .......... .......... .......... .......... .......... 10681 .......... .......... .......... .......... .......... .......... 10741 .......... .......... .......... ||||| // LOCUS (18)-Euthe 10775 bp RNA RNA 09-JAN-1999 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 10775) Corresponding GenBank entry: DIVIDER BASE COUNT 0 a 0 c 0 g 0 t 10775 others ORIGIN 1 |......... .......... .......... .......... .......... .......... 61 .......... .......... .......... .......... .......... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......... .......... .......... .......... 241 .......... .......... .......... .......... .......... .......... 301 .......... .......... .......... .......... .......... .......... 361 .......... .......... .......... .......... .......... .......... 421 .......... .......... .......... .......... .......... .......... 481 .......... .......... .......... .......... .......... .......... 541 .......... .......... .......... .......... .......... .......... 601 .......... .......... .......... .......... .......... .......... 661 .......... .......... .......... .......... .......... .......... 721 .......... .......... .......... .......... .......... .......... 781 .......... .......... .......... .......... .......... .......... 841 .......... .......... .......... .......... .......... .......... 901 .......... .......... .......... .......... .......... .......... 961 .......... .......... .......... .......... .......... .......... 1021 .......... .......... .......... .......... .......... .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .......... .......... .......... .......... .......... 1201 .......... .......... .......... .......... .......... .......... 1261 .......... .......... .......... .......... .......... .......... 1321 .......... .......... .......... .......... .......... .......... 1381 .......... .......... .......... .......... .......... .......... 1441 .......... .......... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... .......... .......... .......... .......... .......... 1621 .......... .......... .......... .......... .......... .......... 1681 .......... .......... .......... .......... .......... .......... 1741 .......... .......... .......... .......... .......... .......... 1801 .......... .......... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .......... .......... 1921 .......... .......... .......... .......... .......... .......... 1981 .......... .......... .......... .......... .......... .......... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... .......... .......... .......... .......... .......... 2161 .......... .......... .......... .......... .......... .......... 2221 .......... .......... .......... .......... .......... .......... 2281 .......... .......... .......... .......... .......... .......... 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... .......... 2701 .......... .......... .......... .......... .......... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... .......... 2881 .......... .......... .......... .......... .......... .......... 2941 .......... .......... .......... .......... .......... .......... 3001 .......... .......... .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .......... .......... 3181 .......... .......... .......... .......... .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .......... .......... .......... 3361 .......... .......... .......... .......... .......... .......... 3421 .......... .......... .......... .......... .......... .......... 3481 .......... .......... .......... .......... .......... .......... 3541 .......... .......... .......... .......... .......... .......... 3601 .......... .......... .......... .......... .......... .......... 3661 .......... .......... .......... .......... .......... .......... 3721 .......... .......... .......... .......... .......... .......... 3781 .....-.... .......... .......... .......... .......... .......... 3841 .......... .......... .......... .......... .......... .......... 3901 .......... .......... .......... .......... .......... .......... 3961 .......... .......... .......... .......... .......... .......... 4021 .......... .......... .......... .......... .......... .......... 4081 .......... .......... .......... .......... .......... .......... 4141 .......... .......... .......... .......... .......... .......... 4201 .......... .......... .......... .......... .......... .......... 4261 .......... .......... .......... .......... .......... .......... 4321 .......... .......... .......... .......... .......... .......... 4381 .......... .......... .......... .......... .......... .......... 4441 .......... .......... .......... .......... .......... .......... 4501 .......... .......... .......... .......... .......... .......... 4561 .......... .......... .......... .......... .......... .......... 4621 .......... .......... .......... .......... .......... .......... 4681 .......... .......... .......... .......... .......... .......... 4741 .......... .......... .......... .......... .......... .......... 4801 .......... .......... .......... ..)....... .......... .......... 4861 .......... .......... .......... .......... .......... .......... 4921 .......... .......... .......... .......... .......... .......... 4981 .......... .......... .......... .......... .......... .......... 5041 .......... .......... .......... .......... .......... .......... 5101 .......... .......... .......... .......... .......... .......... 5161 .......... .......... .......... .......... .......... .......... 5221 .......... .......... .......... .......... .......... .......... 5281 .......... .......... .......... .......... .......... .......... 5341 .......... .......... .......... .......... .......... .......... 5401 .......... .......... .......... .......... .......... .......... 5461 .......... .......... .......... .......... .......... .......... 5521 .......... .......... .......... .......... .......... .......... 5581 .......... .......... .......... .......... .......... .......... 5641 .......... .......... .......... .......... .......... .......... 5701 .......... .......... .......... .......... .......... .......... 5761 .......... .......... .......... .......... .......... .......... 5821 .......... .......... .......... .......... .......... .......... 5881 .......... .......... .......... .......... .......... .......... 5941 .......... .......... .......... .......... .......... .......... 6001 .......... .......... .......... .......... .......... .......... 6061 .......... .......... .......... .......... .......... .......... 6121 .......... .......... .......... .......... .......... .......... 6181 .......... .......... .......... .......... .......... .......... 6241 .......... .......... .......... .......... .......... .......... 6301 .......... .......... .......... .......... .......... .......... 6361 .......... .......... .......... .......... .......... .......... 6421 .......... .......... .......... .......... .......... .......... 6481 .......... .......... .......... .......... .......... .......... 6541 .......... .......... .......... .......... .......... .......... 6601 .......... .......... .......... .......... .......... .......... 6661 .......... .......... .......... .......... .......... .......... 6721 .......... .......... .......... .......... .......... .......... 6781 .......... .......... .......... .......... .......... .......... 6841 .......... .......... .......... .......... .......... .......... 6901 .......... .......... .......... .......... .......... .......... 6961 .......... .......... .......... .......... .......... .......... 7021 .......... .......... .......... .......... .......... .......... 7081 .......... .......... .......... .......... .......... .......... 7141 .......... .......... .......... .......... .......... .......... 7201 .......... .......... .......... .......... .......... .......... 7261 .......... .......... .......... .......... .......... .......... 7321 .......... .......... .......... .......... .......... .......... 7381 .......... .......... .......... .......... .......... .......... 7441 .......... .......... .......... .......... .......... .......... 7501 .......... .......... .......... .......... .......... .......... 7561 .......... .......... .......... .......... .......... .......... 7621 .......... .......... .......... .......... .......... .......... 7681 .......... .......... .......... .......... .......... .......... 7741 .......... .......... .......... .......... .......... .......... 7801 .......... .......... .......... .......... .......... .......... 7861 .......... .......... .......... .......... .......... .......... 7921 .......... .......... .......... .......... .......... .......... 7981 .......... .......... .......... .......... .......... .......... 8041 .......... .......... .......... .......... .......... .......... 8101 .......... .......... .......... .......... .......... .......... 8161 .......... .......... .......... .......... .......... .......... 8221 .......... .......... .......... .......... .......... .......... 8281 .......... .......... .......... .......... .......... .......... 8341 .......... .......... .......... .......... .......... .......... 8401 .......... .......... .......... .......... .......... .......... 8461 .......... .......... .......... .......... .......... .......... 8521 .......... .......... .......... .......... .......... .......... 8581 .......... .......... .......... .......... .......... .......... 8641 .......... .......... .......... .......... .......... .......... 8701 .......... .......... .......... .......... .......... .......... 8761 .......... .......... .......... .......... .......... .......... 8821 .......... .......... .......... .......... .......... .......... 8881 .......... .......... .......... .......... .......... .......... 8941 .......... .......... .......... .......... .......... .......... 9001 .......... .......... .......... .......... .......... .......... 9061 .......... .......... .......... .......... .......... .......... 9121 .......... .......... .......... .......... .......... .......... 9181 .......... .......... .......... .......... .......... .......... 9241 .......... .......... .......... .......... .......... .......... 9301 .......... .......... .......... .......... .......... .......... 9361 .......... .......... .......... .......... .......... .......... 9421 .......... .......... .......... .......... .......... .......... 9481 .......... .......... .......... .......... .......... .......... 9541 .......... .......... .......... .......... .......... .......... 9601 .......... .......... .......... .......... .......... .......... 9661 .......... .......... .......... .......... .......... .......... 9721 .......... .......... .......... .......... .......... .......... 9781 .......... .......... .......... .......... .......... .......... 9841 .......... .......... .......... .......... .......... .......... 9901 .......... .......... .......... .......... .......... .......... 9961 .......... .......... .......... .......... .......... .......... 10021 .......... .......... .......... .......... .......... .......... 10081 .......... .......... .......... .......... .......... .......... 10141 .......... .......... .......... .......... .......... .......... 10201 .......... .......... .......... .......... .......... .......... 10261 .......... .......... .......... .......... .......... .......... 10321 .......... .......... .......... .......... .......... .......... 10381 .......... .......... .......... .......... .......... .......... 10441 .......... .......... .......... .......... .......... .......... 10501 .......... .......... .......... .......... .......... .......... 10561 .......... .......... .......... .......... .......... .......... 10621 .......... .......... .......... .......... .......... .......... 10681 .......... .......... .......... .......... .......... .......... 10741 .......... .......... .......... ||||| // LOCUS (19)-Artio 10775 bp RNA RNA 09-JAN-1999 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 10775) Corresponding GenBank entry: DIVIDER BASE COUNT 0 a 0 c 0 g 0 t 10775 others ORIGIN 1 |......... .......... .......... .......... .......... .......... 61 .......... .......... .......... .......... .......... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......... .......... .......... .......... 241 .......... .......... .......... .......... .......... .......... 301 .......... .......... .......... .......... .......... .......... 361 .......... .......... .......... .......... .......... .......... 421 .......... .......... .......... .......... .......... .......... 481 .......... .......... .......... .......... .......... .......... 541 .......... .......... .......... .......... .......... .......... 601 .......... .......... .......... .......... .......... .......... 661 .......... .......... .......... .......... .......... .......... 721 .......... .......... .......... .......... .......... .......... 781 .......... .......... .......... .......... .......... .......... 841 .......... .......... .......... .......... .......... .......... 901 .......... .......... .......... .......... .......... .......... 961 .......... .......... .......... .......... .......... .......... 1021 .......... .......... .......... .......... .......... .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .......... .......... .......... .......... .......... 1201 .......... .......... .......... .......... .......... .......... 1261 .......... .......... .......... .......... .......... .......... 1321 .......... .......... .......... .......... .......... .......... 1381 .......... .......... .......... .......... .......... .......... 1441 .......... .......... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... .......... .......... .......... .......... .......... 1621 .......... .......... .......... .......... .......... .......... 1681 .......... .......... .......... .......... .......... .......... 1741 .......... .......... .......... .......... .......... .......... 1801 .......... .......... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .......... .......... 1921 .......... .......... .......... .......... .......... .......... 1981 .......... .......... .......... .......... .......... .......... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... .......... .......... .......... .......... .......... 2161 .......... .......... .......... .......... .......... .......... 2221 .......... .......... .......... .......... .......... .......... 2281 .......... .......... .......... .......... .......... .......... 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... .......... 2701 .......... .......... .......... .......... .......... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... .......... 2881 .......... .......... .......... .......... .......... .......... 2941 .......... .......... .......... .......... .......... .......... 3001 .......... .......... .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .......... .......... 3181 .......... .......... .......... .......... .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .......... .......... .......... 3361 .......... .......... .......... .......... .......... .......... 3421 .......... .......... .......... .......... .......... .......... 3481 .......... .......... .......... .......... .......... .......... 3541 .......... .......... .......... .......... .......... .......... 3601 .......... .......... .......... .......... .......... .......... 3661 .......... .......... .......... .......... .......... .......... 3721 .......... .......... .......... .......... .......... .......... 3781 .....-.... .......... .......... .......... .......... .......... 3841 .......... .......... .......... .......... .......... .......... 3901 .......... .......... .......... .......... .......... .......... 3961 .......... .......... .......... .......... .......... .......... 4021 .......... .......... .......... .......... .......... .......... 4081 .......... .......... .......... .......... .......... .......... 4141 .......... .......... .......... .......... .......... .......... 4201 .......... .......... .......... .......... .......... .......... 4261 .......... .......... .......... .......... .......... .......... 4321 .......... .......... .......... .......... .......... .......... 4381 .......... .......... .......... .......... .......... .......... 4441 .......... .......... .......... .......... .......... .......... 4501 .......... .......... .......... .......... .......... .......... 4561 .......... .......... .......... .......... .......... .......... 4621 .......... .......... .......... .......... .......... .......... 4681 .......... .......... .......... .......... .......... .......... 4741 .......... .......... .......... .......... .......... .......... 4801 .......... .......... .......... ..)....... .......... .......... 4861 .......... .......... .......... .......... .......... .......... 4921 .......... .......... .......... .......... .......... .......... 4981 .......... .......... .......... .......... .......... .......... 5041 .......... .......... .......... .......... .......... .......... 5101 .......... .......... .......... .......... .......... .......... 5161 .......... .......... .......... .......... .......... .......... 5221 .......... .......... .......... .......... .......... .......... 5281 .......... .......... .......... .......... .......... .......... 5341 .......... .......... .......... .......... .......... .......... 5401 .......... .......... .......... .......... .......... .......... 5461 .......... .......... .......... .......... .......... .......... 5521 .......... .......... .......... .......... .......... .......... 5581 .......... .......... .......... .......... .......... .......... 5641 .......... .......... .......... .......... .......... .......... 5701 .......... .......... .......... .......... .......... .......... 5761 .......... .......... .......... .......... .......... .......... 5821 .......... .......... .......... .......... .......... .......... 5881 .......... .......... .......... .......... .......... .......... 5941 .......... .......... .......... .......... .......... .......... 6001 .......... .......... .......... .......... .......... .......... 6061 .......... .......... .......... .......... .......... .......... 6121 .......... .......... .......... .......... .......... .......... 6181 .......... .......... .......... .......... .......... .......... 6241 .......... .......... .......... .......... .......... .......... 6301 .......... .......... .......... .......... .......... .......... 6361 .......... .......... .......... .......... .......... .......... 6421 .......... .......... .......... .......... .......... .......... 6481 .......... .......... .......... .......... .......... .......... 6541 .......... .......... .......... .......... .......... .......... 6601 .......... .......... .......... .......... .......... .......... 6661 .......... .......... .......... .......... .......... .......... 6721 .......... .......... .......... .......... .......... .......... 6781 .......... .......... .......... .......... .......... .......... 6841 .......... .......... .......... .......... .......... .......... 6901 .......... .......... .......... .......... .......... .......... 6961 .......... .......... .......... .......... .......... .......... 7021 .......... .......... .......... .......... .......... .......... 7081 .......... .......... .......... .......... .......... .......... 7141 .......... .......... .......... .......... .......... .......... 7201 .......... .......... .......... .......... .......... .......... 7261 .......... .......... .......... .......... .......... .......... 7321 .......... .......... .......... .......... .......... .......... 7381 .......... .......... .......... .......... .......... .......... 7441 .......... .......... .......... .......... .......... .......... 7501 .......... .......... .......... .......... .......... .......... 7561 .......... .......... .......... .......... .......... .......... 7621 .......... .......... .......... .......... .......... .......... 7681 .......... .......... .......... .......... .......... .......... 7741 .......... .......... .......... .......... .......... .......... 7801 .......... .......... .......... .......... .......... .......... 7861 .......... .......... .......... .......... .......... .......... 7921 .......... .......... .......... .......... .......... .......... 7981 .......... .......... .......... .......... .......... .......... 8041 .......... .......... .......... .......... .......... .......... 8101 .......... .......... .......... .......... .......... .......... 8161 .......... .......... .......... .......... .......... .......... 8221 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