LOCUS E.coli 5213 bp RNA RNA ~?~???? DEFINITION Escherichia coli. ACCESSION No information KEYWORDS No information. SOURCE Escherichia coli. ORGANISM Escherichia coli. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Organism information Culture collection: ? Sequence information (bases 1 to 5213) Corresponding GenBank entry: J01695 Phylo:Eubacteria,Purple,gamma,3 BASE COUNT 389 a 352 c 487 g 314 t 3671 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- --|------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- -------AAA UUGAAGAGUU 661 (UGA-)U-CA U|GGCUC-AG AUUGAACGCU -G-GCGG-CA |GG-CC--UA ACAC-A-UGC 721 -AAGUCG-AA CGGUA|ACAG GAAGAAG(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------CUU G)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- -------CUU CUUUGCUG|A 961 C--GA-GU|G GCGGACGGGU GAGUAA--UG U|CUG-GGAA --AC---UGC CUGAU-GGAG 1021 GGGGAUAACU ACUG---(GA AA--)---CG GUAGCUAAUA CCGCAUA--- ---------- 1081 ---------- ---------- ---------- ---------- ---------- -ACGUC(GCA 1141 A----)GACC AAAGAGGGGG ACC(UUCG)G G|CCUCUU-- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ------GCCA UCGGAUGUG- --CCCAG-AU |--------- -GGGAUUA-- 1321 -GCUAGUAGG UG-GG(GUAA CGG------- ---------- ---------- ------)CUC 1381 ACCUA|---- GGCGA--CGA U|CCCUA-GC UG|---GUCU (GAGA--)GG AUGACCAGC| 1441 CACACU-GGA AC(UGAGA-C AC-)GGUCCA G|ACUCC--( UACG-)--GG AGG----C-A 1501 GCA|GUG-GG GAAUAUUGCA C-AAUGGGC( ---------- ----GCAA)G CCUGA-UGC| 1561 A|-GCCA-U- GC-CGC---- -GUGUAUGAA --GAAG-GCC (--------- UUCG------ 1621 --------)G GUUGUA-AAG -UAC|----- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 -----UUUCA GCGGGGAGGA AGGGAGUAAA G(UUAAUAC- )--------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------C UUUG-CUCAU UGACGUUACC CGCAGAAGAA GCACC|-GGC 1921 -UAA-C---U CCGU-G(-CC AGCAGCC-GC -GGU-AA)-U ACGGAG|--- -GGU-GCA-- 1981 AGCGU-UAAU CGG--AAUUA CUGGGC|GUA AAGCGCACGC -A-GGCG|GU UUGUUA--AG 2041 |UCAGA--UG UGAAA----U CCCCGGG(-- --CUCAA)CC UGGGA----- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- --------AC UGCAUCUGAU ---------- ---------- 2221 ---------- ---------- ---------- ---------- ------AC|U GGCAAGC-UU 2281 G-----AGUC -UC-GUAG-A -GGGGG--GU -----|AGAA UUCCAG-GUG ---UAGCG(G 2341 UGAAA)UGC- GUA---GAGA UCUG-GAG-G AAU------- ----ACCGGU -GGC(-GAAG 2401 -)GC|G---- ----GCCCCC U-GGACG-AA GA---CUGAC GCU--CAGGU GCGAA-AGCG 2461 U-GGG---GA GCAAACAGG( AUUAGAUAC) CCUG-GUAG| -UCCA-CGC- CGUAAA-CGA 2521 U--GUCG-AC |UU|GGAGGU UGUGCC(-CU UGA------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---)GGC-GU GGCUUCC-GG AGC(UAAC)G CGUUAAGUCG 2701 A-C|--C|GC C-UGGG-GAG UACGGCC(-- -GCAA--)GG UUA--AAACU CAAAUGAA-U 2761 UG|ACGGGG- GCCCGC---A CAAGCGGU|G GAGCAUGU-G |GUUUAA-UU CG(AUGCAAC 2821 G--------- ----)CGAAG A-ACCUUACC UGGUCUUGAC AUCCACGGA- --AGUUUUCA 2881 (-------GA GA-)UGAGAA UGUGCC(-UU CG)GGAA<-- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ->CCG-UGAG A--C---AGG UGC-UG|CA- 3121 |UG|-GC--U |G------UC GU-CA|G-CU CGU-|GUU(G --UGA)AAUG UUGGG(UUA- 3181 AGU)CCC-G- C-AACGAGCG CAA-CCCUUA -----UCCUU UGUUGCCAGC GG---(uccg 3241 g-)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- CCG|GGAACU CAA-AGGAGA -CUGCCA-GU (GAUA-A)AC UGG-AGGAAG 3781 -----GUG-G GGAUGA-CGU C-AAGUCAUC A|UGGC|CCU UAC------- ---------G 3841 A-C-CA-GGG CU-ACA--CA -CGUGCUACA AU--GGCGCA U-ACAA-AGA GA--AGCGA- 3901 CCUC<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--G CGA--)GAGC -AAGCGGACC UCAU-AAAGU GCG-UCGUAG 4021 ---------- -----UCCGG --AUUGG-AG U-C(------ ---------- ---------- 4081 ---------- ---------- UGCAAC-UC) G-AC-U--CC -A--UGAAG- -UCGGAAUCG 4141 C-U--AGUAA U-CGUGGA(- UCAGA-AU-- --)GCCACGG U-GAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -UAC--GUUC 4261 CCGGGC-CU- UGUACACA-C -CGCCCGUCA C-ACC--AUG GGA-GUGGGU UGC-AAAAGA 4321 AGUAGGUAGC UUAACC---- ---------- ---------- -(uucg--)< ---------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- -------GGA GGGCGCUUAC 4561 -CAC--UUUG UGAUUCAUGA CUGG-GGU-G AAGUCGUAAC AAGGUAAC-C GUA-GG(GGA 4621 -A)CCU-GC- GGUUGGAUCA CCUCCUUA-| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS (1)-EUKARY 5213 bp RNA RNA 25-JAN-1994 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: DIVIDER BASE COUNT 0 a 0 c 0 g 0 t 5213 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ----|..... .......... .......... 541 .......... .......... .......... .......... .......... .......... 601 .......... .......... .......... .......... .......... .......... 661 .......-.. .......... .......... ..-....... |......... ....-..... 721 .......-.. .....|.... ........-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- ------.... .......... 841 .......... .......... .......... .......... .......... .......... 901 .......... .......... .......... .......... .......... .......... 961 .....-..|. .......... .......... .|........ -......... .....-.... 1021 .......... ....---... ..-..---.. .......... .......... .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .......... .......... .......... .......... .......... 1201 .......... .......... .......... .......... .......... .......... 1261 .......... .......... .........- .......... ..----.... ........-- 1321 .......... .......... .......... .......... .......... .......... 1381 ......---. .......... .......-.. .......... .......... .......... 1441 .......... ........-. ..-....... .......... .......... ........-. 1501 ...|...-.. .......... .......... .......... .......... .....-...| 1561 .......... .......... .......... .......... .--....... .......... 1621 .......... .......... .......... .......... .......... .......... 1681 .......... .......... .......... .......... .......... .......... 1741 .......... .......... .......... .......... .......... .......... 1801 .......... .......... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .......... .......... 1921 .......... .......-.. .......... -.......-. .......... .......... 1981 .....-.... ...--..... .......... .......... -......... .......... 2041 .......... .....----. .......... .......... .....----- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- --------.. .......... .......... .......... 2221 .......... .......... .......... .......... ........|. .......-.. 2281 .......... -......... ......--.. .-........ .......... ---....... 2341 .......... ...-...... ....-..... .......... .......... .......... 2401 ....|..... .......... .......... .......... .......... .....-.... 2461 .....--... .......... .......... .......... .......... .......... 2521 .--....-.. |......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... .......... 2701 .-..-..... .......... .......... .......... .......... .......... 2761 ..|....... .......... ........|. ........-. |......... .......... 2821 .--------- ----...... .-........ .......... .......... .......... 2881 .....---.. ..-....... .......... .......... .......... .......... 2941 .......... .......... .......... .......... .......... .......... 3001 .......... .......... .......... .......... .......... .......... 3061 .......... .......... .......... .......... .--....... ...-.....- 3121 .......--. |......... .......-.. .......... .-........ .........- 3181 .......... .-........ .......... .......... .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .......... .......... .......... 3361 .......... .......... .......... .......... .....--... .......... 3421 .......... .......... .......... .......... .......... .......... 3481 .......... ........-- --........ .......... .......... .......... 3541 .......... .......... .......... .......... .......... .......... 3601 .......... .......... .......... .......... .......... .......... 3661 .......... .......... .......... .......... .......... .......... 3721 .......... .......... .......... .......... .....-.... .......... 3781 .......... .......... .......... ......|... ...------- -------... 3841 ...-..-... ..-....... .......... ..-....... ......-... ..--...... 3901 .......... .......... .......... .......... .......... .......... 3961 .......... .......... ...-...... .......... .......... .......... 4021 ......---. .......... .-........ .-........ .......... .......... 4081 .......... .......... ......-... .......... .........- .......... 4141 .-.-...... .......... .......... .......... .-........ .......... 4201 .......... .......... .......... .......... .......... .......... 4261 .......... .......... .......... .-........ ...-...... .......... 4321 .......... ......-... .........- .......... -......... .........- 4381 .....-.... .......... ........-- ....-..... .......... .......... 4441 .......... .......... .......... .......... .......... .......... 4501 .......... .......... ...--..... ........-- .......... .......... 4561 .......... .......... ........-. .......... ........-. ...-...... 4621 -.....-... .......... .......... .......... .......... .......... 4681 .......... .......... .......... .......... .......... .......... 4741 .......... .......... .......... .......... .......... .......... 4801 .......... .......... .......... .......... .......... .......... 4861 .......... .......... .......... .......... .......... .......... 4921 .......... .......... .......... .......... .......... .......... 4981 .......... .......... .......... .......... .......... .......... 5041 .......... .......... .......... .......... .......... .......... 5101 .......... .......... .......... .......... .......... .......... 5161 .......... .......... .......... .......... ........|| ||| // LOCUS (2)-DICTYO 5213 bp RNA RNA 25-JAN-1994 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: DIVIDER BASE COUNT 0 a 0 c 0 g 0 t 5213 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ----|..... .......... .......... 541 .......... .......... .......... .......... .......... .......... 601 .......... .......... .......... .......... .......... .......... 661 .......-.. .......... .......... ..-....... |......... ....-..... 721 .......-.. .....|.... ........-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- ------.... .......... 841 .......... .......... .......... .......... .......... .......... 901 .......... .......... .......... .......... .......... .......... 961 .....-..|. .......... .......... .|........ -......... .....-.... 1021 .......... ....---... ..-..---.. .......... .......... .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .......... .......... .......... .......... .......... 1201 .......... .......... .......... .......... .......... .......... 1261 .......... .......... .........- .......... ..----.... ........-- 1321 .......... .......... .......... .......... .......... .......... 1381 ......---. .......... .......-.. .......... .......... .......... 1441 .......... ........-. ..-....... .......... .......... ........-. 1501 ...|...-.. .......... .......... .......... .......... .....-...| 1561 .......... .......... .......... .......... .--....... .......... 1621 .......... .......... .......... .......... .......... .......... 1681 .......... .......... .......... .......... .......... .......... 1741 .......... .......... .......... .......... .......... .......... 1801 .......... .......... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .......... .......... 1921 .......... .......-.. .......... -.......-. .......... .......... 1981 .....-.... ...--..... .......... .......... -......... .......... 2041 .......... .....----. .......... .......... .....----- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- --------.. .......... .......... .......... 2221 .......... .......... .......... .......... ........|. .......-.. 2281 .......... -......... ......--.. .-........ .......... ---....... 2341 .......... ...-...... ....-..... .......... .......... .......... 2401 ....|..... .......... .......... .......... .......... .....-.... 2461 .....--... .......... .......... .......... .......... .......... 2521 .--....-.. |......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... .......... 2701 .-..-..... .......... .......... .......... .......... .......... 2761 ..|....... .......... ........|. ........-. |......... .......... 2821 .--------- ----...... .-........ .......... .......... .......... 2881 .....---.. ..-....... .......... .......... .......... .......... 2941 .......... .......... .......... .......... .......... .......... 3001 .......... .......... .......... .......... .......... .......... 3061 .......... .......... .......... .......... .--....... ...-.....- 3121 .......--. |......... .......-.. .......... .-........ .........- 3181 .......... .-........ .......... .......... .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .......... .......... .......... 3361 .......... .......... .......... .......... .....--... .......... 3421 .......... .......... .......... .......... .......... .......... 3481 .......... ........-- --........ .......... .......... .......... 3541 .......... .......... .......... .......... .......... .......... 3601 .......... .......... .......... .......... .......... .......... 3661 .......... .......... .......... .......... .......... .......... 3721 .......... .......... .......... .......... .....-.... .......... 3781 .......... .......... .......... ......|... ...------- -------... 3841 ...-..-... ..-....... .......... ..-....... ......-... ..--...... 3901 .......... .......... .......... .......... .......... .......... 3961 .......... .......... ...-...... .......... .......... .......... 4021 ......---. .......... .-........ .-........ .......... .......... 4081 .......... .......... ......-... .......... .........- .......... 4141 .-.-...... .......... .......... .......... .-........ .......... 4201 .......... .......... .......... .......... .......... .......... 4261 .......... .......... .......... .-........ ...-...... .......... 4321 .......... ......-... .........- .......... -......... .........- 4381 .....-.... .......... ........-- ....-..... .......... .......... 4441 .......... .......... .......... .......... .......... .......... 4501 .......... .......... ...--..... ........-- .......... .......... 4561 .......... .......... ........-. .......... ........-. ...-...... 4621 -.....-... .......... .......... .......... .......... .......... 4681 .......... .......... .......... .......... .......... .......... 4741 .......... .......... .......... .......... .......... .......... 4801 .......... .......... .......... .......... .......... .......... 4861 .......... .......... .......... .......... .......... .......... 4921 .......... .......... .......... .......... .......... .......... 4981 .......... .......... .......... .......... .......... .......... 5041 .......... .......... .......... .......... .......... .......... 5101 .......... .......... .......... .......... .......... .......... 5161 .......... .......... .......... .......... ........|| ||| // LOCUS mt.D.disco 5213 bp RNA RNA 11-JAN-191 DEFINITION mitochondria,Dictyostelium discoideum. ACCESSION No information KEYWORDS No information. SOURCE mitochondria,Dictyostelium discoideum. ORGANISM mitochondria,Dictyostelium discoideum. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: D16466 Dictyostelium discoideum mitochondrial SSU rRNA sequence (from Y. Tanaka) BASE COUNT 573 a 218 c 366 g 394 t 3662 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ----|----- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ----AAGAAA AAAAUGAGUU 661 (UGA-)U-UC U|GGCUC-CG AAUGAAUGCU -A-UCAG-UG |GG-CU--UU AUAC-A-UGC 721 -AAGUUG-AA CGcua|uu-- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- ------gaaa -)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- -----aau|a 961 g---A-GU|A GCAAAAAGGU GAGUAA--UG C|AUA-UGaa --uu---uua auaau-aauu 1021 uugggaaua- -------(aa ag-a)----- ---agaaauc cagaaua--- ---------- 1081 ---------- ---------- ---------- ---------- ---------- -aaaa--gaa 1141 a-----gagg aacuugaaaa aca-guaa-g a-cuc----- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ------Guua uuauaaaag- --CGUAU-GU |--------- -CGAAUUA-- 1321 -GGCAGUUGG UG-GG(GUAA AGG------- ---------- ---------- ------)CUU 1381 ACCAA|---- ACCUG--AGA U|UCGUA-GG UG|---GUUC (GAGA--)GA AUGAUCAUC| 1441 CACAUU-GGU AU(UGAAA-G AA-)CGACCA A|ACUC---( ugaa-)---G AGG----C-U 1501 GCA|GUA-AG GAAUAUUGGA C-AAUGAGC( ---------- ----GCAA)G CUUGA-UCC| 1561 A|-GCUA-C- AC-UGA---- -GUGAGGGAA --GAAg-u-- (--------- -aaa------ 1621 --------)- -gcgUA-AAC -CUC|----- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ----UUUUAA -uaaggaaga uaa------- -(-------- )--------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ugacaaaaau uaaAGAAGAA GUCCC|-GGC 1921 -UAA-U---U UCGU-G(-CC AGCCGCC-GC -GGU-AA)-U ACGGAG|--- -GGG-GCA-- 1981 AGCAU-UAUU CGU--AAGGA UUGGGC|GUA AAGGGUGCGU -A-GGCU|GG UUCUCA-AAG 2041 |guauu--au augaa----a aacacu-(ga aaaaaga)-g gugug----- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- --------gg uauaaaaaca a--------- ---------- 2221 ---------- ---------- ---------- ---------- ------AC|A AAGAACC-UA 2281 G-----AGUA -AA-GAUG-A -UGUAU--UU -----|AGAA GAACUA-AUC ---UAGAG(G 2341 UAAAA)UUCa auu---uagA UUAG-UUU-G ACU------- ---gacaguU -GGC(-GAAG 2401 -)GC|A---- ----AAAUAC A--agca-a- UA---CUGAC GCU--AAAGC ACGAA-GGUU 2461 C-AGG---GA GCAAAUCGG( AUUAGAGAC) CCGA-GUAG| -UCUG-AAC- AGUAAA-CGA 2521 U--GAGU-GU |UC|aauauu ------(-cu aaaa------ ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---)------ -aguauu-ug AGU(UAAC)A CGUUAAACAC 2701 U-C|--C|GC C-UGAG-UAG UACGAUC(-- -GCAA--)GA UUG--AAACU CAAGGUAA-U 2761 UG|ACGGAA- CUUUGC---G CAAGCAGU|G GAUUAUGU-U |CAUUAA-UU UG(AUACAAC 2821 A--------- ----)CGAAA A-AUCUUACC CUCCAUUGAA ugacauaua- ---------- 2881 ---------- ---------- ---------- -------aaa-ug-u cuaac--AGG UGU-UG|CA- 3121 |UG|-GC--U |G------UC GU-CA|G-UU CGU-|GCU(G --UGA)GGUG UAACA(UUA- 3181 AGU)UGU-G- A-AACGAACG AAA-UCCUUA ----aguuca auuacgau-- ------auau 3241 a--------- ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 --------au cga-gaaaug gacagaagag ugugacauaa auuaa-a-uc acauugguag 3781 -----UUG-A GGAAGA-UGU C-AAGUCAGU A|UGGC|CCU UAU------- ---------A 3841 G-G-AG-GGG CU-UGA--AA -UGUAAUACA AU--GGUUUC U-ACAA-AAG GA--AGCGA- 3901 AAGU<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--G CAA--)GCUG -GAGCAAAAC CUA--AAAAG AAA-UCUUAG 4021 ---------- -----UUUGG --AUUUA-UU U-C(------ ---------- ---------- 4081 ---------- ---------- UGCAAC-UC) G-AA-A--UA -A--UGAAA- -GCGGAAUUG 4141 C-U--AGUAA U-CGUAGA(- UCAUA-AG-- --)GCUUCGG U-GAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -UAG--UUG- 4261 UCAAAG-UU- AGUACAUA-C -CGCCCGUCA C-ACC--ACG Gaa-aucaau cuuuuucaga 4321 uacauuauua uguuaa-uua ucuaaaguu- cuuaggguau -aacagucuc u--------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ------uuug aag--agcaa uuagaaug-- gaggagguua auuguuaauu 4561 aucgaacaau agagggguaa CUGG-GGU-A AAGUCGUAAC ACGGUAGC-U GUU-GG(GGA 4621 -A)CCA-GU- AGCUGGAAGU A--------| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS (2)-MYXOMY 5213 bp RNA RNA 25-JAN-1994 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: DIVIDER BASE COUNT 0 a 0 c 0 g 0 t 5213 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ----|..... .......... .......... 541 .......... .......... .......... .......... .......... .......... 601 .......... .......... .......... .......... .......... .......... 661 .......-.. .......... .......... ..-....... |......... ....-..... 721 .......-.. .....|.... ........-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- ------.... .......... 841 .......... .......... .......... .......... .......... .......... 901 .......... .......... .......... .......... .......... .......... 961 .....-..|. .......... .......... .|........ -......... .....-.... 1021 .......... ....---... ..-..---.. .......... .......... .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .......... .......... .......... .......... .......... 1201 .......... .......... .......... .......... .......... .......... 1261 .......... .......... .........- .......... ..----.... ........-- 1321 .......... .......... .......... .......... .......... .......... 1381 ......---. .......... .......-.. .......... .......... .......... 1441 .......... ........-. ..-....... .......... .......... ........-. 1501 ...|...-.. .......... .......... .......... .......... .....-...| 1561 .......... .......... .......... .......... .--....... .......... 1621 .......... .......... .......... .......... .......... .......... 1681 .......... .......... .......... .......... .......... .......... 1741 .......... .......... .......... .......... .......... .......... 1801 .......... .......... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .......... .......... 1921 .......... .......-.. .......... -.......-. .......... .......... 1981 .....-.... ...--..... .......... .......... -......... .......... 2041 .......... .....----. .......... .......... .....----- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- --------.. .......... .......... .......... 2221 .......... .......... .......... .......... ........|. .......-.. 2281 .......... -......... ......--.. .-........ .......... ---....... 2341 .......... ...-...... ....-..... .......... .......... .......... 2401 ....|..... .......... .......... .......... .......... .....-.... 2461 .....--... .......... .......... .......... .......... .......... 2521 .--....-.. |......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... .......... 2701 .-..-..... .......... .......... .......... .......... .......... 2761 ..|....... .......... ........|. ........-. |......... .......... 2821 .--------- ----...... .-........ .......... .......... .......... 2881 .....---.. ..-....... .......... .......... .......... .......... 2941 .......... .......... .......... .......... .......... .......... 3001 .......... .......... .......... .......... .......... .......... 3061 .......... .......... .......... .......... .--....... ...-.....- 3121 .......--. |......... .......-.. .......... .-........ .........- 3181 .......... .-........ .......... .......... .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .......... .......... .......... 3361 .......... .......... .......... .......... .....--... .......... 3421 .......... .......... .......... .......... .......... .......... 3481 .......... ........-- --........ .......... .......... .......... 3541 .......... .......... .......... .......... .......... .......... 3601 .......... .......... .......... .......... .......... .......... 3661 .......... .......... .......... .......... .......... .......... 3721 .......... .......... .......... .......... .....-.... .......... 3781 .......... .......... .......... ......|... ...------- -------... 3841 ...-..-... ..-....... .......... ..-....... ......-... ..--...... 3901 .......... .......... .......... .......... .......... .......... 3961 .......... .......... ...-...... .......... .......... .......... 4021 ......---. .......... .-........ .-........ .......... .......... 4081 .......... .......... ......-... .......... .........- .......... 4141 .-.-...... .......... .......... .......... .-........ .......... 4201 .......... .......... .......... .......... .......... .......... 4261 .......... .......... .......... .-........ ...-...... .......... 4321 .......... ......-... .........- .......... -......... .........- 4381 .....-.... .......... ........-- ....-..... .......... .......... 4441 .......... .......... .......... .......... .......... .......... 4501 .......... .......... ...--..... ........-- .......... .......... 4561 .......... .......... ........-. .......... ........-. ...-...... 4621 -.....-... .......... .......... .......... .......... .......... 4681 .......... .......... .......... .......... .......... .......... 4741 .......... .......... .......... .......... .......... .......... 4801 .......... .......... .......... .......... .......... .......... 4861 .......... .......... .......... .......... .......... .......... 4921 .......... .......... .......... .......... .......... .......... 4981 .......... .......... .......... .......... .......... .......... 5041 .......... .......... .......... .......... .......... .......... 5101 .......... .......... .......... .......... .......... .......... 5161 .......... .......... .......... .......... ........|| ||| // LOCUS mt.P.polyc 5213 bp RNA RNA 11-JAN-191 DEFINITION Mitochondrion Physarum polycephalum. ACCESSION No information KEYWORDS No information. SOURCE Mitochondrion Physarum polycephalum. ORGANISM Mitochondrion Physarum polycephalum. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: X75592 DEFINITION P. polycephalum M3C mitochondrial SSU gene for 17S ribosomal RNA(pSSU) SOURCE slime mould ORGANISM Physarum polycephalum Eukaryota; Plantae; Thallobionta; Myxomycota; Myxomycetes; Myxogastromycetidae; Physarales; Physaraceae. REFERENCE 1 (bases 1 to 1861) AUTHORS Mahendran,R., Spottswood,M.S., Ghate,A., Ling,M., Jeng,K. and Miller,D.L. TITLE Editing of the mitochondrial small subunit rRNA in Physarum polycephalum JOURNAL EMBO J. 0, 0-0 (1993) REFERENCE 2 (bases 1 to 1861) AUTHORS Miller,D.L. TITLE Direct Submission JOURNAL Submitted (03-NOV-1993) MILLER D. L., The University of Texas at Dallas, Molecular and Cell Biology Program, 2601 N. Floyd Road, Richardson, Texas, U.S.A., 75080 FEATURES Location/Qualifiers source 1..1861 9 /organism="Physarum polycephalum" /strain="M3C" /clone="pSSU series" /dev_stage="Plasmodia" /clone_lib="PCR generated cDNA library of D. Miller" rRNA 1..1861 /product="mitochondrial 17S ribosomal RNA" /gene="SSU" /standard_name="mitochondrial small subunit rRNA" /label=MT-SSUrRNA /citation=[1] /note="The rRNA sequence is produced by the insertion of nucleotides not encoded by the mtDNA gene (RNA editing)" misc_feature group(33,66,127,162,177,214,238,260,288,309,502,658,675, 807 ,855,865,914,935,951,1068,1111,1128,1160,1266) /evidence=EXPERIMENTAL /label=Cinsert1 /citation=[1] /note="Cytidine insertions - RNA editing" misc_feature group(1303,1323,1355,1409,1431,1461,1480,1506,1525,1574, 1607,1624,1638,1679,1761,1790) /evidence=EXPERIMENTAL /label=Cinsert2 /citation=[1] /note="Cytidine insertions - RNA editing" misc_feature one-of(333,334) /evidence=EXPERIMENTAL /label=Uinsert1 /citation=[1] /note="Uridine insertion - RNA editing" misc_feature one-of(729,730,731) /evidence=EXPERIMENTAL /label=AAinsert1 /citation=[1] /note="Adenosine dinucleotide insertion - RNA editing" misc_feature one-of(1040,1041,1042,1043) /evidence=EXPERIMENTAL /label=CUinsert1 /citation=[1] /note="Cytidine/uridine insertion - RNA editing" misc_feature one-of(1819,1820,1821) /evidence=EXPERIMENTAL /label=AAinsert2 /citation=[1] /note="Adenosine dinucleotide insertion - RNA editing" BASE COUNT 558 a 324 c 418 g 561 t 3352 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ----|----- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------g uuuuaauaua auaauGAGUU 661 (UGA-)U-CC U|GGCUC-cG AGAGAAUGCU -A-GCAA-CU |UA-CU--UG AUAC-A-UGC 721 -UAGUCG-AA CGcuu|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------aua u)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- -------g|a 961 g---C-GU|G GCGUACGAGC GACAAG--GG C|AAA-Gaua --ga--aaau acau--cag- 1021 ucaagg---- -------(ga aa-u)----- -------ccu aga------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- -uuuaa(-aa 1141 ga---)uuau a--------- -------ucg ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ------cuga auguaa-gg- --UCUUU-GU |--------- -GAGAUUA-- 1321 -GGUUGUUGG UA-AG(AUAA AAG------- ---------- ---------- ------)CCU 1381 ACCAA|---- GCCGA--UGA U|CUCUA-GC UG|---GUCU (GAGA--)GG AUGUACAGC| 1441 CGCGUC-GGA AA(UGCAA-U AA-)GGUCCG G|ACUCC--( CUCG-)--GG AGG----C-U 1501 GCA|GUA-GG GAAUCGUGAA C-AAUGUGC( ---------- ----UAAC)G CUUGA-UUC| 1561 U|-AUAA-U- GU-UGC---- -gugggggau acaaaa-aac a------uua uuuuau---- 1621 --------ac uuauuguuuu auaaacaaau uuauauauaa aauagugaua auucuagcaa 1681 cgacuuaagc gcaauaaaag uuuccguaaa aagagauuuu uaucuguguc uucuguagcg 1741 ugccuuucua guagacggca aguugucuua aaccccuuuu uuuacgauua uaaugacugu 1801 aguuaguaua uaucuauuua ucaagaugag gguugguaaa uuacauuuug uuuguuagac 1861 uaaaauacuc gagcaaaaau gccuuaugcu gcuuugcuua aaaauaucAA ACCCC|-GGC 1921 -UAA-C---U UCGU-G(-CC AGCAGCC-GC -GGU-AA)-A ACGGGG|--- -GGG-GUU-- 1981 AGUGU-UAUU CGU--GAUGA CUGGGC|GUA AAGGGUACGU -A-GGCA|ga uaauug--aa 2041 |aauac--ag uaaaa----a acugagg(-- --uaaac)cc ucuu------ ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- --------ca uucuguauuc ---------- ---------- 2221 ---------- ---------- ---------- ---------- ------ac|u cauuauc-uu 2281 g-----aguu -ca-gaag-g -cgguu--ua u----|UGAA UUCUCG-AAG ---GAAGG(G 2341 UGAAA)UCU- GUU---GAUA UCUG-GAA-G ACA------- ----UUCGAU -AGC(-GAAA 2401 -)GC|A---- ----acaucc g-auucu-g- au---CUAAC GCU--CAGGU ACUAA-AGUA 2461 U-GGG---GA UCAAAUAGG( AUUAGAGAC) CCUA-GUAG| -UCCA-UAC- CUUAAA-CAA 2521 U--GAGU-GU |UC|aacguc uuuaa-(uau agucaauaua u--------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---)-uu-ag gggguuu-aA AGC(UAAC)G CGUGAAACAC 2701 U-C|--C|GC C-UGGG-GAA UGUGGCC(-- -GCAA--)GG UCU--AAACU CAAAGGAA-U 2761 UG|ACGGUG- ACUUAU---A CAAGGGGU|G GAGCAUGU-G |GUUUAA-UU CG(ACAUACC 2821 G--------- ----)CGCAA A-ACCUUACC AAUUUUUG-u aucugguuuc uu-------- 2881 ---------- ---------- ---------- -------uaa-cc-a a--ugacaAG AGC-UG|CA- 3121 |UG|-AU--U |G------UC GU-AA|G-UU CGU-|GCC(G --UGA)GGUG UUGGG(UUC- 3181 AUU)CCAUA- --AACGAACG CAA-CCCUUU -----ugauu aguugcauaa uggau(---- 3241 --)<-gaaag uuuaaacugg au-------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------aucc auguucacua guucaaccag -cccuuc-ua (ccuu--)ua ggg-AUUAAG 3781 -----GAC-A GGUCCA-CGU C-AAAUCAUU A|UGGC|CUU AAU------- ---------A 3841 G-A-UU-GGG CU-ACA--CA -UGUGCUACA UU--GAUGAU CGACAA-CAA GA--AGCAA- 3901 UGGC<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--G UGA--)GCCU -GAGCAAAUC UUUA-AAAGA -CA-UUUCAG 4021 ---------- -----UCCGA --AUUGU-UC U-U(------ ---------- ---------- 4081 ---------- ---------- UGAAAc-uc) A-AG-A--GC -A--UGAAG- -CCGGAAUCU 4141 C-U--UGUAA U-CGUGGA(- UCAUU-AC-- --)GCCACGG U-GAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -UUA--GUAC 4261 AAAAGU-CA- CGUACAGA-C -CGCCCGUCA U-GCU--AUG GAA-ACUAUU UGA-AGUAGA 4321 Agu-uacaag guuuca-a-- ---------- ---------- -(------)< uuguuucga- 4381 uagac-cacc uuauugaaag uuuuc-au-- aagg-ccuug aca-uucug- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ------uugg cuuuguacac 4561 -gac--UCUU UAUUUAGGGA CUGG-AGU-A AAGUCGAAAC AGGGUAGU-G GUA-GA(AGA 4621 -A)UCU-GC- UGCUGGACCA UUAUUA---| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS (2)-CROWN 5213 bp RNA RNA 25-JAN-1994 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: DIVIDER BASE COUNT 0 a 0 c 0 g 0 t 5213 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ----|..... .......... .......... 541 .......... .......... .......... .......... .......... .......... 601 .......... .......... .......... .......... .......... .......... 661 .......-.. .......... .......... ..-....... |......... ....-..... 721 .......-.. .....|.... ........-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- ------.... .......... 841 .......... .......... .......... .......... .......... .......... 901 .......... .......... .......... .......... .......... .......... 961 .....-..|. .......... .......... .|........ -......... .....-.... 1021 .......... ....---... ..-..---.. .......... .......... .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .......... .......... .......... .......... .......... 1201 .......... .......... .......... .......... .......... .......... 1261 .......... .......... .........- .......... ..----.... ........-- 1321 .......... .......... .......... .......... .......... .......... 1381 ......---. .......... .......-.. .......... .......... .......... 1441 .......... ........-. ..-....... .......... .......... ........-. 1501 ...|...-.. .......... .......... .......... .......... .....-...| 1561 .......... .......... .......... .......... .--....... .......... 1621 .......... .......... .......... .......... .......... .......... 1681 .......... .......... .......... .......... .......... .......... 1741 .......... .......... .......... .......... .......... .......... 1801 .......... .......... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .......... .......... 1921 .......... .......-.. .......... -.......-. .......... .......... 1981 .....-.... ...--..... .......... .......... -......... .......... 2041 .......... .....----. .......... .......... .....----- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- --------.. .......... .......... .......... 2221 .......... .......... .......... .......... ........|. .......-.. 2281 .......... -......... ......--.. .-........ .......... ---....... 2341 .......... ...-...... ....-..... .......... .......... .......... 2401 ....|..... .......... .......... .......... .......... .....-.... 2461 .....--... .......... .......... .......... .......... .......... 2521 .--....-.. |......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... .......... 2701 .-..-..... .......... .......... .......... .......... .......... 2761 ..|....... .......... ........|. ........-. |......... .......... 2821 .--------- ----...... .-........ .......... .......... .......... 2881 .....---.. ..-....... .......... .......... .......... .......... 2941 .......... .......... .......... .......... .......... .......... 3001 .......... .......... .......... .......... .......... .......... 3061 .......... .......... .......... .......... .--....... ...-.....- 3121 .......--. |......... .......-.. .......... .-........ .........- 3181 .......... .-........ .......... .......... .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .......... .......... .......... 3361 .......... .......... .......... .......... .....--... .......... 3421 .......... .......... .......... .......... .......... .......... 3481 .......... ........-- --........ .......... .......... .......... 3541 .......... .......... .......... .......... .......... .......... 3601 .......... .......... .......... .......... .......... .......... 3661 .......... .......... .......... .......... .......... .......... 3721 .......... .......... .......... .......... .....-.... .......... 3781 .......... .......... .......... ......|... ...------- -------... 3841 ...-..-... ..-....... .......... ..-....... ......-... ..--...... 3901 .......... .......... .......... .......... .......... .......... 3961 .......... .......... ...-...... .......... .......... .......... 4021 ......---. .......... .-........ .-........ .......... .......... 4081 .......... .......... ......-... .......... .........- .......... 4141 .-.-...... .......... .......... .......... .-........ .......... 4201 .......... .......... .......... .......... .......... .......... 4261 .......... .......... .......... .-........ ...-...... .......... 4321 .......... ......-... .........- .......... -......... .........- 4381 .....-.... .......... ........-- ....-..... .......... .......... 4441 .......... .......... .......... .......... .......... .......... 4501 .......... .......... ...--..... ........-- .......... .......... 4561 .......... .......... ........-. .......... ........-. ...-...... 4621 -.....-... .......... .......... .......... .......... .......... 4681 .......... .......... .......... .......... .......... .......... 4741 .......... .......... .......... .......... .......... .......... 4801 .......... .......... .......... .......... .......... .......... 4861 .......... .......... .......... .......... .......... .......... 4921 .......... .......... .......... .......... .......... .......... 4981 .......... .......... .......... .......... .......... .......... 5041 .......... .......... .......... .......... .......... .......... 5101 .......... .......... .......... .......... .......... .......... 5161 .......... .......... .......... .......... ........|| ||| // LOCUS (3)-ACANTH 5213 bp RNA RNA 25-JAN-1994 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: DIVIDER BASE COUNT 0 a 0 c 0 g 0 t 5213 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ----|..... .......... .......... 541 .......... .......... .......... .......... .......... .......... 601 .......... .......... .......... .......... .......... .......... 661 .......-.. .......... .......... ..-....... |......... ....-..... 721 .......-.. .....|.... ........-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- ------.... .......... 841 .......... .......... .......... .......... .......... .......... 901 .......... .......... .......... .......... .......... .......... 961 .....-..|. .......... .......... .|........ -......... .....-.... 1021 .......... ....---... ..-..---.. .......... .......... .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .......... .......... .......... .......... .......... 1201 .......... .......... .......... .......... .......... .......... 1261 .......... .......... .........- .......... ..----.... ........-- 1321 .......... .......... .......... .......... .......... .......... 1381 ......---. .......... .......-.. .......... .......... .......... 1441 .......... ........-. ..-....... .......... .......... ........-. 1501 ...|...-.. .......... .......... .......... .......... .....-...| 1561 .......... .......... .......... .......... .--....... .......... 1621 .......... .......... .......... .......... .......... .......... 1681 .......... .......... .......... .......... .......... .......... 1741 .......... .......... .......... .......... .......... .......... 1801 .......... .......... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .......... .......... 1921 .......... .......-.. .......... -.......-. .......... .......... 1981 .....-.... ...--..... .......... .......... -......... .......... 2041 .......... .....----. .......... .......... .....----- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- --------.. .......... .......... .......... 2221 .......... .......... .......... .......... ........|. .......-.. 2281 .......... -......... ......--.. .-........ .......... ---....... 2341 .......... ...-...... ....-..... .......... .......... .......... 2401 ....|..... .......... .......... .......... .......... .....-.... 2461 .....--... .......... .......... .......... .......... .......... 2521 .--....-.. |......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... .......... 2701 .-..-..... .......... .......... .......... .......... .......... 2761 ..|....... .......... ........|. ........-. |......... .......... 2821 .--------- ----...... .-........ .......... .......... .......... 2881 .....---.. ..-....... .......... .......... .......... .......... 2941 .......... .......... .......... .......... .......... .......... 3001 .......... .......... .......... .......... .......... .......... 3061 .......... .......... .......... .......... .--....... ...-.....- 3121 .......--. |......... .......-.. .......... .-........ .........- 3181 .......... .-........ .......... .......... .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .......... .......... .......... 3361 .......... .......... .......... .......... .....--... .......... 3421 .......... .......... .......... .......... .......... .......... 3481 .......... ........-- --........ .......... .......... .......... 3541 .......... .......... .......... .......... .......... .......... 3601 .......... .......... .......... .......... .......... .......... 3661 .......... .......... .......... .......... .......... .......... 3721 .......... .......... .......... .......... .....-.... .......... 3781 .......... .......... .......... ......|... ...------- -------... 3841 ...-..-... ..-....... .......... ..-....... ......-... ..--...... 3901 .......... .......... .......... .......... .......... .......... 3961 .......... .......... ...-...... .......... .......... .......... 4021 ......---. .......... .-........ .-........ .......... .......... 4081 .......... .......... ......-... .......... .........- .......... 4141 .-.-...... .......... .......... .......... .-........ .......... 4201 .......... .......... .......... .......... .......... .......... 4261 .......... .......... .......... .-........ ...-...... .......... 4321 .......... ......-... .........- .......... -......... .........- 4381 .....-.... .......... ........-- ....-..... .......... .......... 4441 .......... .......... .......... .......... .......... .......... 4501 .......... .......... ...--..... ........-- .......... .......... 4561 .......... .......... ........-. .......... ........-. ...-...... 4621 -.....-... .......... .......... .......... .......... .......... 4681 .......... .......... .......... .......... .......... .......... 4741 .......... .......... .......... .......... .......... .......... 4801 .......... .......... .......... .......... .......... .......... 4861 .......... .......... .......... .......... .......... .......... 4921 .......... .......... .......... .......... .......... .......... 4981 .......... .......... .......... .......... .......... .......... 5041 .......... .......... .......... .......... .......... .......... 5101 .......... .......... .......... .......... .......... .......... 5161 .......... .......... .......... .......... ........|| ||| // LOCUS mt.A.caste 5213 bp RNA RNA 11-JAN-191 DEFINITION Mitochondrion Acanthamoeba castellanii. ACCESSION No information KEYWORDS No information. SOURCE Mitochondrion Acanthamoeba castellanii. ORGANISM Mitochondrion Acanthamoeba castellanii. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: U03732 BASE COUNT 500 a 226 c 358 g 476 t 3653 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ----|----- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- -------aau uccauuacuu guauaaacaa ucguuGGGUU 661 (UUA-)U-UC U|GGCUC-CG AGUGAACGCU -G-GUAA-CA |UA-UU-UUA ACAC-A-UGC 721 -AAAUCG-AA CGAA-|---- --AAGUA(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------AAU U)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- -------UAC UU------|U 961 A---A-GU|G GUGACCUGGU GAGUAG--UA U|AGG-AGAA --UU---GAA GUGUG-GGUU 1021 AGG------- ---C---(UA AA-U)---U- ---------- CCUAAAA--- ---------- 1081 ---------- ---------- ---------- ---------- ---------- -UUAUU(AAA 1141 -----)AAUA AAAGAU---- ---(UUAU)- -----AUC-- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ------GCCU ACAAUAGAG- --CUUCU-AA |--------- -AGGAUUA-- 1321 -GGUAGUUGU UG-UA(GUAA UUA------- ---------- ---------- ------)UUC 1381 AACAA|---- GCCGA--CGA U|GCUUA-GC UG|---GUUU (GAGA--)GA AUGAUCAGC| 1441 CACAUU-GGG AC(UGAAA-A -C-)GGCCCA A|GUCUU--( CUAA-)--AA GGG----C-A 1501 GCA|GUG-GA GAAUAUUUGA C-AAUGGGC( ---------- ----GAAA)G CUUGA-UCG| 1561 A|-GUAA-U- GU-UAC---- -GUGGGUGAU CAGAAG-GCU (--------- UAAU------ 1621 --------)U GCCGUA-AAA -CUC|----- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ----GUUUCG UCAAGGAUUA UAA------- -(-------- )--------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- --------UG CAAUCGUACU UGAAGGAGAA GCCCU|-GAC 1921 -UAA-C---U UCGU-G(-CC AGCAGUC-GC -GGU-AA)-U ACGGAG|--- -AGG-GCG-- 1981 AGUGU-UAUU CGC--AUUGA CUGGGU|GUA AAGGGUGCGU -A-GGUG|GU UUGUUA--AG 2041 |UUUCA--AA GUAAA----U GUUAAAC(-- --AUAAA)GU UUAA------ ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- --------AG GCUUUUUAAU ---------- ---------- 2221 ---------- ---------- ---------- ---------- ------AC|U AACAGAC-UA 2281 G-----AGUU -UA-UUAG-A -AGAUA--GC -----|UGAA CAUUAA-GUG ---UAAAG(G 2341 UGAAA)UUU- UUC---GAUA UUUA-AAG-G ACA------- ----ugcaau aGGC(-GAAG 2401 -)GC|U---- ----GCUAUC U-AUUUU-AA UA---CUGAC ACU--GAGGC ACAAA-AGCA 2461 U-AGG---GA UCAAACAGG( AUUAGAGAC) CCUG-GUAG| -UCUA-UGC- CCUGAC-CGA 2521 U--GAAU-AU |UG|AUUAUA CU----(-GC GA-------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---)-----G GUGUAAU-UA AGC(UAAC)G CGU-AAAUAU 2701 U-C|--C|AC C-UGAG-UAC UACGACC(-- -GCAA--)GG UUA--AAACU CAAAGAAA-C 2761 UG|ACGGAA- GAUUGU---A UAAGCGGU|G GAGUAUGU-G |GUUUAA-UU UG(AUAUAAC 2821 G--------- ----)CAAAG A-AUCUUACC AACCCUUGAA -UACAAGUU- ---AUUUUAG 2881 (cugu---ga ua-)AUGGAA U--------- -------ACU-UG-U A--C---AGG UGC-UG|CA- 3121 |UG|-GU--U |G------UC GG-CA|G-UU CGU-|GUU(G --UGA)AAUG UUUUG(UUA- 3181 AUU)CAU-U- U-AACGGACG UAA-CCUUCA -----GCUUU AU-uuguu-- -----(uuug 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|-aaaaa AUA-GAGCAA -UAUUAA-UU (UGAA--)AA UUA-AUUGA- 3781 -----GAG-G AGAAGA-AGU C-AAAUCAUU A|UGGC|CUA UAU------- ---------A 3841 G-G-UU-GGG CU-ACA--CA -CGUACUACA AU--GGUAAU U-ACAA-UGU GA--AGCGA- 3901 AAAU<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--G CGA--)GUUU -UAGCUAAUC AU-U-AAAAA UUAaUCUUAG 4021 ---------- -----UUCUG --AUUAC-UC U-C(------ ---------- ---------- 4081 ---------- ---------- UGUAAg-uc) G-AG-A--GU -A--UGAAG- -UAGGAAUCG 4141 C-U--AGUAA U-CGCAGA(- AUAGA-AU-- --)GUUGCGG U-GAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -UAU--AUUC 4261 UCAAUC-UU- UGUACACA-C -CGCCCGUCA C-GCC--AUG GGA-AUUggu uug-auuaga 4321 agugguauag gc------uc agauucuga- ugucuuuuaa -(uuuuuu)< uuaaaguua- 4381 ucgca-ucuu gg-------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- uacuaauuac 4561 -gac--aauu agauuAAGGA CUGG-GGU-G AAGUCGUAAC AAGGUAGC-G GUA-GG(GGA 4621 -A)CCU-GC- UGCUGGACAA AA-------| UUUUUUUAAA GG~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS (3)-ALVEOL 5213 bp RNA RNA 25-JAN-1994 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: DIVIDER BASE COUNT 0 a 0 c 0 g 0 t 5213 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ----|..... .......... .......... 541 .......... .......... .......... .......... .......... .......... 601 .......... .......... .......... .......... .......... .......... 661 .......-.. .......... .......... ..-....... |......... ....-..... 721 .......-.. .....|.... ........-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- ------.... .......... 841 .......... .......... .......... .......... .......... .......... 901 .......... .......... .......... .......... .......... .......... 961 .....-..|. .......... .......... .|........ -......... .....-.... 1021 .......... ....---... ..-..---.. .......... .......... .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .......... .......... .......... .......... .......... 1201 .......... .......... .......... .......... .......... .......... 1261 .......... .......... .........- .......... ..----.... ........-- 1321 .......... .......... .......... .......... .......... .......... 1381 ......---. .......... .......-.. .......... .......... .......... 1441 .......... ........-. ..-....... .......... .......... ........-. 1501 ...|...-.. .......... .......... .......... .......... .....-...| 1561 .......... .......... .......... .......... .--....... .......... 1621 .......... .......... .......... .......... .......... .......... 1681 .......... .......... .......... .......... .......... .......... 1741 .......... .......... .......... .......... .......... .......... 1801 .......... .......... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .......... .......... 1921 .......... .......-.. .......... -.......-. .......... .......... 1981 .....-.... ...--..... .......... .......... -......... .......... 2041 .......... .....----. .......... .......... .....----- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- --------.. .......... .......... .......... 2221 .......... .......... .......... .......... ........|. .......-.. 2281 .......... -......... ......--.. .-........ .......... ---....... 2341 .......... ...-...... ....-..... .......... .......... .......... 2401 ....|..... .......... .......... .......... .......... .....-.... 2461 .....--... .......... .......... .......... .......... .......... 2521 .--....-.. |......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... .......... 2701 .-..-..... .......... .......... .......... .......... .......... 2761 ..|....... .......... ........|. ........-. |......... .......... 2821 .--------- ----...... .-........ .......... .......... .......... 2881 .....---.. ..-....... .......... .......... .......... .......... 2941 .......... .......... .......... .......... .......... .......... 3001 .......... .......... .......... .......... .......... .......... 3061 .......... .......... .......... .......... .--....... ...-.....- 3121 .......--. |......... .......-.. .......... .-........ .........- 3181 .......... .-........ .......... .......... .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .......... .......... .......... 3361 .......... .......... .......... .......... .....--... .......... 3421 .......... .......... .......... .......... .......... .......... 3481 .......... ........-- --........ .......... .......... .......... 3541 .......... .......... .......... .......... .......... .......... 3601 .......... .......... .......... .......... .......... .......... 3661 .......... .......... .......... .......... .......... .......... 3721 .......... .......... .......... .......... .....-.... .......... 3781 .......... .......... .......... ......|... ...------- -------... 3841 ...-..-... ..-....... .......... ..-....... ......-... ..--...... 3901 .......... .......... .......... .......... .......... .......... 3961 .......... .......... ...-...... .......... .......... .......... 4021 ......---. .......... .-........ .-........ .......... .......... 4081 .......... .......... ......-... .......... .........- .......... 4141 .-.-...... .......... .......... .......... .-........ .......... 4201 .......... .......... .......... .......... .......... .......... 4261 .......... .......... .......... .-........ ...-...... .......... 4321 .......... ......-... .........- .......... -......... .........- 4381 .....-.... .......... ........-- ....-..... .......... .......... 4441 .......... .......... .......... .......... .......... .......... 4501 .......... .......... ...--..... ........-- .......... .......... 4561 .......... .......... ........-. .......... ........-. ...-...... 4621 -.....-... .......... .......... .......... .......... .......... 4681 .......... .......... .......... .......... .......... .......... 4741 .......... .......... .......... .......... .......... .......... 4801 .......... .......... .......... .......... .......... .......... 4861 .......... .......... .......... .......... .......... .......... 4921 .......... .......... .......... .......... .......... .......... 4981 .......... .......... .......... .......... .......... .......... 5041 .......... .......... .......... .......... .......... .......... 5101 .......... .......... .......... .......... .......... .......... 5161 .......... .......... .......... .......... ........|| ||| // LOCUS (4)-Apicom 5213 bp RNA RNA 25-JAN-1994 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: DIVIDER BASE COUNT 0 a 0 c 0 g 0 t 5213 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ----|..... .......... .......... 541 .......... .......... .......... .......... .......... .......... 601 .......... .......... .......... .......... .......... .......... 661 .......-.. .......... .......... ..-....... |......... ....-..... 721 .......-.. .....|.... ........-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- ------.... .......... 841 .......... .......... .......... .......... .......... .......... 901 .......... .......... .......... .......... .......... .......... 961 .....-..|. .......... .......... .|........ -......... .....-.... 1021 .......... ....---... ..-..---.. .......... .......... .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .......... .......... .......... .......... .......... 1201 .......... .......... .......... .......... .......... .......... 1261 .......... .......... .........- .......... ..----.... ........-- 1321 .......... .......... .......... .......... .......... .......... 1381 ......---. .......... .......-.. .......... .......... .......... 1441 .......... ........-. ..-....... .......... .......... ........-. 1501 ...|...-.. .......... .......... .......... .......... .....-...| 1561 .......... .......... .......... .......... .--....... .......... 1621 .......... .......... .......... .......... .......... .......... 1681 .......... .......... .......... .......... .......... .......... 1741 .......... .......... .......... .......... .......... .......... 1801 .......... .......... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .......... .......... 1921 .......... .......-.. .......... -.......-. .......... .......... 1981 .....-.... ...--..... .......... .......... -......... .......... 2041 .......... .....----. .......... .......... .....----- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- --------.. .......... .......... .......... 2221 .......... .......... .......... .......... ........|. .......-.. 2281 .......... -......... ......--.. .-........ .......... ---....... 2341 .......... ...-...... ....-..... .......... .......... .......... 2401 ....|..... .......... .......... .......... .......... .....-.... 2461 .....--... .......... .......... .......... .......... .......... 2521 .--....-.. |......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... .......... 2701 .-..-..... .......... .......... .......... .......... .......... 2761 ..|....... .......... ........|. ........-. |......... .......... 2821 .--------- ----...... .-........ .......... .......... .......... 2881 .....---.. ..-....... .......... .......... .......... .......... 2941 .......... .......... .......... .......... .......... .......... 3001 .......... .......... .......... .......... .......... .......... 3061 .......... .......... .......... .......... .--....... ...-.....- 3121 .......--. |......... .......-.. .......... .-........ .........- 3181 .......... .-........ .......... .......... .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .......... .......... .......... 3361 .......... .......... .......... .......... .....--... .......... 3421 .......... .......... .......... .......... .......... .......... 3481 .......... ........-- --........ .......... .......... .......... 3541 .......... .......... .......... .......... .......... .......... 3601 .......... .......... .......... .......... .......... .......... 3661 .......... .......... .......... .......... .......... .......... 3721 .......... .......... .......... .......... .....-.... .......... 3781 .......... .......... .......... ......|... ...------- -------... 3841 ...-..-... ..-....... .......... ..-....... ......-... ..--...... 3901 .......... .......... .......... .......... .......... .......... 3961 .......... .......... ...-...... .......... .......... .......... 4021 ......---. .......... .-........ .-........ .......... .......... 4081 .......... .......... ......-... .......... .........- .......... 4141 .-.-...... .......... .......... .......... .-........ .......... 4201 .......... .......... .......... .......... .......... .......... 4261 .......... .......... .......... .-........ ...-...... .......... 4321 .......... ......-... .........- .......... -......... .........- 4381 .....-.... .......... ........-- ....-..... .......... .......... 4441 .......... .......... .......... .......... .......... .......... 4501 .......... .......... ...--..... ........-- .......... .......... 4561 .......... .......... ........-. .......... ........-. ...-...... 4621 -.....-... .......... .......... .......... .......... .......... 4681 .......... .......... .......... .......... .......... .......... 4741 .......... .......... .......... .......... .......... .......... 4801 .......... .......... .......... .......... .......... .......... 4861 .......... .......... .......... .......... .......... .......... 4921 .......... .......... .......... .......... .......... .......... 4981 .......... .......... .......... .......... .......... .......... 5041 .......... .......... .......... .......... .......... .......... 5101 .......... .......... .......... .......... .......... .......... 5161 .......... .......... .......... .......... ........|| ||| // LOCUS mt.P.falci 5213 bp RNA RNA 20-JAN-1992 DEFINITION Plasmodium falciparum. ACCESSION No information KEYWORDS No information. SOURCE Plasmodium falciparum. ORGANISM Plasmodium falciparum. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: M76611 BASE COUNT 123 a 81 c 103 g 122 t 4784 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ----|----- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- ---------- 661 ---------- ---------- ---------- ---------- |--------- ---------- 721 ---------- -----|---- ---------- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- ---------- ---------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------|- ---------- ---------- -|-------- ---------- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 ---------- ---------- ---------- ---------- ---------- ---------- 1381 ---------- ---------- -|-------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- -|-------- ---------- ---------- 1501 ---|------ ---------- ---------- ---------- ---------- ---------| 1561 ---------- ---------- ---------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- -auuu|-GAU 1921 -CCA-U---A CAGU-C(-CC AGCGACA-GC -GGU-UA)-U ACUUUG|--- -GAAgagucg 1981 aguau-uauc cau--ccaug ucaGGC|GUu aaaagcguuc -g/....... ......-... 2041 |......... .....----. .......(-- -......).. .....----- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- --------.. .......... .......... .......... 2221 .......... .......... .......... .......... ........|. .......-.. 2281 .---...... -......... -.....--.. -----|.... ......-..- -----...(. 2341 .....).... ..----.... ....-....- ------.... .......... ....(-.... 2401 -)..|..... .......... .......... ..---..... ...--..... .....-.... 2461 .-...---.. .........( .........) .........| -....-...- ......-... 2521 .--....-.. |..|...... ......(... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... ...)...... .......... ...(....). .......... 2701 .--|--u|GC C-ugga-ggu uacgucca-- u-ac------ aguu-auaag caagugga-A 2761 UG|UUAGAA- GCAAAC---A CUAGCGGU|G GAACACAU-U |GUUUCA-UU UG(AUAGUAA 2821 A--------- ----)CACUA U-ACCUUACC AAUCUAUUUG /--------- ----...... 2881 (....---.. ..-)...... ......(... ..)....<.. .......... .......... 2941 .......... .......... .......... .......... .......... .......... 3001 .......... .......... .......... .......... .......... .......... 3061 .......... .......... .......... .>........ .--.---... ...-..|..- 3121 ...|-..--. |..-...... .....|.-.. ....|...(. .-...).... .....(...- 3181 ...)...... --........ .......... .......... .......... .....(.... 3241 ..)<...... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .......... .......... ......---- 3361 ------.... ..-------- ------.... .......... .....--... .......... 3421 .......... .......... .......... .......... .......... .......... 3481 .......... ---------- ---------- ---------- ----...... .......... 3541 .......... .......... .......... .......... .......... .......... 3601 .......... .......... .......... .......... .......... .......... 3661 .......... .......... .......... .......... .......... .......... 3721 ......>... ...|...... .......... .......... (....-.).. .......... 3781 ........-. .......... ....----/u c-aaau|ugg AUG------- ---------G 3841 U-G-UU-GG- cu-ggg--ca -uuuaaucca cu--cuuuu- ---------- ---------- 3901 ----(--- -----)---- ---------- ---------- ------ag-- 4021 ---------- -----gaUUU --GAcgg-uc a-a(------ ---------- ---------- 4081 ---------- ---------- -cucaa-ua) u-ug-g--cu -gcuggAAG- -UAGAAAUCG 4141 U-U--AUUAA G-CGUCAG(- GAAGU-CC-- --)UGGACGU U-GAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -u-------- 4261 --UUGC-CU- UGUACACA-C -CGCUCGUCA C-GCA/aucg acu-cgu--- ---------- 4321 ---------- ---------- ---------- ---------- ---------- gagguaaaa- 4381 gaa------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- -----ac-ag ucgg-UGC-G AAGUCGUAAC AUGGUAGU-U GAC-AG(UGA 4621 -A)CUU-GU- AGCUG----- ---------| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS (4)-CILIOP 5213 bp RNA RNA 25-JAN-1994 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: DIVIDER BASE COUNT 0 a 0 c 0 g 0 t 5213 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ----|..... .......... .......... 541 .......... .......... .......... .......... .......... .......... 601 .......... .......... .......... .......... .......... .......... 661 .......-.. .......... .......... ..-....... |......... ....-..... 721 .......-.. .....|.... ........-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- ------.... .......... 841 .......... .......... .......... .......... .......... .......... 901 .......... .......... .......... .......... .......... .......... 961 .....-..|. .......... .......... .|........ -......... .....-.... 1021 .......... ....---... ..-..---.. .......... .......... .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .......... .......... .......... .......... .......... 1201 .......... .......... .......... .......... .......... .......... 1261 .......... .......... .........- .......... ..----.... ........-- 1321 .......... .......... .......... .......... .......... .......... 1381 ......---. .......... .......-.. .......... .......... .......... 1441 .......... ........-. ..-....... .......... .......... ........-. 1501 ...|...-.. .......... .......... .......... .......... .....-...| 1561 .......... .......... .......... .......... .--....... .......... 1621 .......... .......... .......... .......... .......... .......... 1681 .......... .......... .......... .......... .......... .......... 1741 .......... .......... .......... .......... .......... .......... 1801 .......... .......... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .......... .......... 1921 .......... .......-.. .......... -.......-. .......... .......... 1981 .....-.... ...--..... .......... .......... -......... .......... 2041 .......... .....----. .......... .......... .....----- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- --------.. .......... .......... .......... 2221 .......... .......... .......... .......... ........|. .......-.. 2281 .......... -......... ......--.. .-........ .......... ---....... 2341 .......... ...-...... ....-..... .......... .......... .......... 2401 ....|..... .......... .......... .......... .......... .....-.... 2461 .....--... .......... .......... .......... .......... .......... 2521 .--....-.. |......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... .......... 2701 .-..-..... .......... .......... .......... .......... .......... 2761 ..|....... .......... ........|. ........-. |......... .......... 2821 .--------- ----...... .-........ .......... .......... .......... 2881 .....---.. ..-....... .......... .......... .......... .......... 2941 .......... .......... .......... .......... .......... .......... 3001 .......... .......... .......... .......... .......... .......... 3061 .......... .......... .......... .......... .--....... ...-.....- 3121 .......--. |......... .......-.. .......... .-........ .........- 3181 .......... .-........ .......... .......... .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .......... .......... .......... 3361 .......... .......... .......... .......... .....--... .......... 3421 .......... .......... .......... .......... .......... .......... 3481 .......... ........-- --........ .......... .......... .......... 3541 .......... .......... .......... .......... .......... .......... 3601 .......... .......... .......... .......... .......... .......... 3661 .......... .......... .......... .......... .......... .......... 3721 .......... .......... .......... .......... .....-.... .......... 3781 .......... .......... .......... ......|... ...------- -------... 3841 ...-..-... ..-....... .......... ..-....... ......-... ..--...... 3901 .......... .......... .......... .......... .......... .......... 3961 .......... .......... ...-...... .......... .......... .......... 4021 ......---. .......... .-........ .-........ .......... .......... 4081 .......... .......... ......-... .......... .........- .......... 4141 .-.-...... .......... .......... .......... .-........ .......... 4201 .......... .......... .......... .......... .......... .......... 4261 .......... .......... .......... .-........ ...-...... .......... 4321 .......... ......-... .........- .......... -......... .........- 4381 .....-.... .......... ........-- ....-..... .......... .......... 4441 .......... .......... .......... .......... .......... .......... 4501 .......... .......... ...--..... ........-- .......... .......... 4561 .......... .......... ........-. .......... ........-. ...-...... 4621 -.....-... .......... .......... .......... .......... .......... 4681 .......... .......... .......... .......... .......... .......... 4741 .......... .......... .......... .......... .......... .......... 4801 .......... .......... .......... .......... .......... .......... 4861 .......... .......... .......... .......... .......... .......... 4921 .......... .......... .......... .......... .......... .......... 4981 .......... .......... .......... .......... .......... .......... 5041 .......... .......... .......... .......... .......... .......... 5101 .......... .......... .......... .......... .......... .......... 5161 .......... .......... .......... .......... ........|| ||| // LOCUS mt.P.aurel 5213 bp RNA RNA 25-JUL-1994 DEFINITION Mitochondrion Paramecium aurelia.; 5.8S ribosomal RNA; apocytochrome; apocytochrome b; atp 9 gene; ATP synthetase; cytb gene; cytochrome c oxidase; cytochrome c oxidase subunit I; cytochrome c oxidase subunit II; dehydrogenase; dicyclohexylcarbodiimide-binding protein; NADH dehydrogenase; ND1 protein; ND2 protein; ND3 protein; ND4 protein; ND5 protein; ndh1 gene; ndh2 gene; ndh3 gene; ndh4 gene; ndh5gene; oxidase; P1 gene; P1 protein; psbG gene; ribosomal protein; ribosomal protein L14; ribosomal protein L2; ribosomal protein S12; ribosomal protein S14; ribosomal RNA; ribosomal RNA large subunit; ribosomal RNA small subunit; synthetase; transfer RNA; transfer RNA-Phe; transfer RNA-Trp; transfer RNA-Tyr. ACCESSION X15917 KEYWORDS 5.8S ribosomal RNA; apocytochrome; apocytochrome b; atp 9 gene; ATP synthetase; cytb gene; cytochrome c oxidase; cytochrome c oxidase subunit I; cytochrome c oxidase subunit II; dehydrogenase; dicyclohexylcarbodiimide-binding protein; NADH dehydrogenase; ND1 protein; ND2 protein; ND3 protein; ND4 protein; ND5 protein; ndh1 gene; ndh2 gene; ndh3 gene; ndh4 gene; ndh5gene; oxidase; P1 gene; P1 protein; psbG gene; ribosomal protein; ribosomal protein L14; ribosomal protein L2; ribosomal protein S12; ribosomal protein S14; ribosomal RNA; ribosomal RNA large subunit; ribosomal RNA small subunit; synthetase; transfer RNA; transfer RNA-Phe; transfer RNA-Trp; transfer RNA-Tyr. SOURCE Mitochondrion Paramecium aurelia. ORGANISM Mitochondrion Paramecium aurelia. REFERENCE 1 (bases 1 to 40469) AUTHORS Pritchard,A. TITLE Direct Submission JOURNAL Submitted (21-JUL-1989) to the EMBL/GenBank/DDBJ databases. Pritchard A., University of Colorado Health Science Centre, Department of Microbiology, Denver CO 80262, U S A STANDARD No information REFERENCE 2 (bases 1 to 40469) AUTHORS Pritchard,A.E., Seilhamer,J.J., Mahalingam,R., Sable,C.L., Venuti,S.E. and Cummings,D.J. TITLE Nucleotide sequence of the mitochondrial genome of Paramecium JOURNAL Nucleic Acids Res. 18 (1), 173-180 (1990) STANDARD No information REFERENCE 3 (bases 1 to 40469) AUTHORS Valverde,J.R., Marco,R. and Garesse,R. TITLE A conserved heptamer motif for ribosomal RNA transcription termination in animal mitochondria JOURNAL Proc. Natl. Acad. Sci. U.S.A. 91 (12), 5368-5371 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: X15917 For overlapping sequences see accession numbers <K00904>, <M15275>, <M15220>, <K01751>, <K01749>, <X04157> and <M26930>. NCBI gi: 13256 BASE COUNT 559 a 271 c 348 g 496 t 3539 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ----|----- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 -------uuu aguugcagcc aggcugcaua cuuggaugua agaauucuuu uuuagGAGUG 661 (UGA-)U-CU U|AGCUU-UG AUUUAACGCU -A-AUCA-AA |UG-CA--UU ACAC-A-CGC 721 -AAGUUU-UA UUuua|caca agaaccu(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- ---------- -)uc------ 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- -------uuc uuugc(uuaa aau)-gcaaa gaucuagu|u 961 uuaaA-AU|A GCGUAUUGGU GCGUAA-aAU A|UGU-CUuu --uu---auu CGUAU-UGUA 1021 CCU----U-- --AG---(au ag-g)---CU ---------- AGGU------ ---------- 1081 ---------- ------uuuc uuccuuuuaa gaagu(uuaa ugccac)cca aaaaaaauuu 1141 u---uuaaaa aaaucgauac uua(agua)u ugaacucuuu uuuugau--- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ------CCAA UAGGAAAAA- --AGAUA-UA |g-------- -AGCGCUU-- 1321 -CGAAUUCGA AG-GG(g--- -gg------- ---------- ---------- ------)CCA 1381 CUUGG|---- GCCUC--CUG C|GCUUA-GC UG|---AUUU (GUGA--)GA AGAAUCAGC| 1441 CACAUACAGG UA(UGUGA-- AA-)GACCUU A|Uc-----( u-cg-)---- -gA----C-A 1501 GAA|GUG-gg gaauuUUGGG C-AAUGCGC( ---------- ----UUAA)G CGUGA-CCC| 1561 A|-GCAA-A- UU-GAU---- -GUUGC-gAA --GAAa-aua (--------- agug------ 1621 --------)a gg-ugc-cu- -GCA|----- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ----gcaaug ugggau---- ---------- ---------- -augccucuu ugacuuuuuu 1801 uaaacgcagg ccagaaacga guauaauuaa gcuaa----- ---------- ---------- 1861 ---------- ---------- ---------- --------gu uuuguuagAA GCGAU|-GGC 1921 -CAA-U--AC AUGU-G(-CC AGCAGCC-GC -GGU-AA)-U ACAUGA|--- -GUA-GCU-- 1981 AGCGU-UAAU CGU--CCUUA UUGAGC|GUA CAGAGUGAGU -C-GGCG|GU Cauaac-aau 2041 |uaauaacua uuuuu----- -------(-- ---auau)-- ----a----- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- --------aa aaga------ --uauuaa-- ---------- 2221 ---------- ---------- ---------- ---------- ------ua|a aaagGAC-UA 2281 G---UGAUUU -UU-UUUU-A -UGUAA--GU -----|UGAG CUUGUA-AAC ---UAGUG(A 2341 UAAAA)UAC- AGG---GAGU UUAC-AGG-A ACA------- ----UUCGAC --GC(-GAAA 2401 -)GC|G---- ----ACUAAC A-AUUAA-A- AA---AUGAC GCU--AUAUC ACGAA-AGUA 2461 U-AGG---UA AUGAAAAGG( cauuuuaaa) CCUA-GUAG| -UCUA-UAC- UGUAAA-AGA 2521 U--GAGU-AU |UU|------ ------(-aa uac------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---)------ --------UA AGU(UAAC)A CA-aAAAUAC 2701 U-C|--C|GC U-UGGG-UAG UAAAGCC(-- -GCAA--)GU CAG--AAACU UAACAGAA-U 2761 UG|GCGGGG- ACUUGU---U CAAACGGU|G GAGCAUGU-G |GUUUAA-UG CG(AUAAUCC 2821 A--------- ----)CGUAA A-ACCUUAgC AGCGU-uaaa uuuuuuucuu uaguuaagcu 2881 (-------uc au-)ggcuaa aa-uuu(-uu ag)aaa-<-- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ->aaa-ag-a g--A---UGG UAU-UG|CA- 3121 |UG|-GC--U |G------UC GU-CA|G-UU CGU-|GUU(U --UGA)AAUU UAGAA(UUA- 3181 AGU)UUUAU- A-AACGAACG CAA-CCCUUG -----UUUUG UAUG------ -----(uuu- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|----AA UAC-AAAAUA aaugauu-aa (-gga-a)uu auucauuuu- 3781 -agcuagA-A GGCUGA-AGU CAAAGUCCUU A|CGGU|CUG CGU------- ---------A 3841 C-G-CU-GGG CU-ACA--CA -CGUGUUACA AU--GGUAAA A-ACAA-UAG Aa--aaaca- 3901 aagc<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--u cua-a)ccuu uaguu----U UU-A-AAAAA UUA-CCACAG 4021 ---------- -----UACGA --AUUGU-UU U-C(------ ---------- ---------- 4081 ---------- ---------- UGAAAc-uu) G-GA-A--GC -A--UGAAG- -AAGAAAUCG 4141 U-U--AGUAA U-CGCAAA(- UAAGU-AU-- --)G-UGCGG U-GAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -AUA--UAAG 4261 UCAAGU-CC- UGCACACA-C -UGCCCAUCA C-GCU--CAA AGA-GUUuua aau------- 4321 ---------- ---------- ---------- ---------- -(------)< cuagaagcu- 4381 gaauu-uagg augugacccu acccauuu-- uuuu-uuuua aaa-aaacuc gccggugcac 4441 caaacac-cg guguucuaaa caagcu-acu uguugucagc acaaagaaga guaaaggcga 4501 aacc------ ---------- -->------- ---------- ---------- ---------- 4561 ---------a uuugaAAUGA UCGG-AGU-G AAGUUGACAC AAGGUACC-G GUA-UG(GGA 4621 -A)CUU-GC- CGGUGGAGCA ---------| aggugaacag accaaugcau gcacc~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS mt.P.prima 5213 bp RNA RNA 30-SEP-1988 DEFINITION Mitochondrion Paramecium primaurelia.; 13S ribosomal RNA; 16S ribosomal RNA; ribosomal RNA. ACCESSION K01750 KEYWORDS 13S ribosomal RNA; 16S ribosomal RNA; ribosomal RNA. SOURCE Mitochondrion Paramecium primaurelia. ORGANISM Mitochondrion Paramecium primaurelia. REFERENCE 1 (bases 1 to 1718) AUTHORS Seilhamer,J.J., Olsen,G.J. and Cummings,D.J. TITLE Paramecium mitochondrial genes: I. Small subunit rRNA gene sequence and microevolution JOURNAL J. Biol. Chem. 259, 5167-5172 (1984) STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: K01750 The overall rRNA gene sequence was 94% conserved between two species (primaurelia and tetraurelia), and the nucleotide differences consisted of 53% transitions, 37% transversions, and 9% insertions plus deletions [1]. These subsitutions were somewhat clustered, and the two most divergent regions coincided with the gene boundaries. According to nuclease S1 data, the small subunit rRNA gene starts in the region (bases 25 to 45) and stops in the region (bases 1703 to 1716). Using tentative assignments of bases 30 (start) and 1710 (stop), the small subunit rDNA spans about 1680 bases [1]. BASE COUNT 560 a 277 c 341 g 509 t 3526 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 -------uuc uagccuuaau aacuaaaauu uacggaugua aggauuccuu uuuagGAGUG 661 (UGA-)U-CU U|AGCUU-UG AUUUAACGCU -A-AUCG-GG |UG-CA--UU ACAC-A-CGC 721 -AAGUUU-UA UUuua|caca agaaccu(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- ---------- -)uc------ 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- -------uuu uuugc(uuaa aau)-gcaaa gaucaagu|u 961 uuaaA-AU|A GCGUAUUGGU GCGUAA-aAU A|UGU-CUuu --uu---auu CCUAU-UGUA 1021 CCU----U-- --AG---(au ag-g)---UU ---------- AGGU------ ---------- 1081 ---------- -------uuu uuuauuuuag cuagu(uuaa aucccc)acc cccaaaagac 1141 u-uuuaaaga aaa--ucgau ccu(uaa-)g auuaaacuuu uuuuuugau- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ------CCAA UAAGAAAAA- --AGAUA-UA |g-------- -AGCGCUU-- 1321 -CGUUUUCGA AG-GG(g--- -gg------- ---------- ---------- ------)CCA 1381 UUUGG|---- GCUU---CUG C|GCUUA-GC UG|---AUUU (GUGA--)GA AGAAUCAGC| 1441 CACAUACAGG UA(UGUGA-- AC-)GACCUU A|Uc-----( u-cg-)---- -gA----C-A 1501 GAA|GUG-GG GAAUUUUGGG C-AAUGCGC( ---------- ----UUAA)G CGUGA-CCC| 1561 A|-GCAA-A- UU-GAU---- -GUUGCGGAA --GAAa-aua (--------- agcg------ 1621 --------)a ggguac-cuC -GUA|----- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ----gcaaua cgagcu---- ---------- ---------- -uagccucuu uaacuuuuuu 1801 uaaacgcagg ccagaaacga guauaauuaa gcuaa----- ---------- ---------- 1861 ---------- ---------- ---------- --------gu uuuguuagAA GCUAU|-GGC 1921 -CAA-U--AC AUGU-G(-CC AGCAGCC-GC -GGU-AA)-U ACAUGA|--- -GUA-GCU-- 1981 AGCGU-UAAU CGU--CUUUA UUGAGC|GUA CAGAGUGAAG -C-GGCG|GU Cagaac-aau 2041 |uaauaacua uuuuu----- -------(-- ---auau)-- ----a----- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- --------aa aaua------ --uauuaa-- ---------- 2221 ---------- ---------- ---------- ---------- ------ua|A AAAGGAC-UA 2281 G---UGAUUU -UU-UUUU-A -UGUAA--GU -----|UGAG CUUGUA-AAC ---UAGUG(A 2341 UAAAA)UAC- AGG---GAGU UUAC-AGG-A ACA------- ----UUCAAC --GC(-GAAA 2401 -)GC|G---- ----ACUAAC A-AUUAA-A- AA---AUGAC GCU--CUAUC ACGAA-AGUA 2461 U-AGG---UA AUGAAAAGG( cauuuuaac) CCUA-GUAG| -UCUA-UAC- UGUAAA-AGA 2521 U--GAGU-AU |UU|------ ------(-aa uac------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---)------ --------UA AGU(UAAC)A CA-aAAAUAC 2701 U-C|--C|GC U-UGGG-UAG UAACGCC(-- -GCAA--)GU CAG--AAACU UAACAGAA-U 2761 UG|GCGGGG- ACUUGU---U CAAACGGU|G GAGCAUGU-G |GUUUAA-UG CG(AUAAUCC 2821 A--------- ----)CGUAA A-ACCUUACC AGCGU-uaaa uuuuuuucuu uaauuaagcu 2881 (-------ua au-)ggcuga aa-uuu(-uu ag)aaa-<-- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ->aaa-ag-a g--A---UGG UAU-UG|CA- 3121 |UG|-GC--U |G------UC GU-CA|G-UU CGU-|GUU(U --UGA)AAUU UAGAA(UUA- 3181 AGU)UUUAU- A-AACGAACG CAA-CCCUUG -----UUUUG UAUU------ -----(uuu- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|----AA UAC-AAAAUA aaugauu-aa (-gga-a)uu auucauuuu- 3781 -agcuaaA-A GGCUGA-AGU CAAAGUCCUU A|CGGU|CUG CGU------- ---------A 3841 C-G-CU-GGG CU-ACA--CA -CGUGUUACA AU--GGUAAA A-ACAA-UAG AA--Aaaca- 3901 aagc<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--u cac--)ccuu uaguu----U UU-A-AAAAA UUA-CCACAG 4021 ---------- -----UACGA --AUUGU-UU U-C(------ ---------- ---------- 4081 ---------- ---------- UGAAAc-uu) G-GA-A--GC -A--UGAAG- -AAGAAAUCG 4141 U-U--AGUAA U-CGCAUA(- UAAGU-AU-- --)GCUGCGG U-GAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -AUA--AAAG 4261 UCAAGU-CC- UGCACACA-C -UGCCCAUCA C-GCU--CAA AGA-GUUuca aau------- 4321 ---------- ---------- ---------- ---------- -(------)< cuggaagcu- 4381 gaauu-uagg augugacccu acccauuu-- uuuu-uuuua aaa-aaauuc gccagugcac 4441 aagugcgcug guguucuuaa caagcuuucu uguuguuagc acaaagaaga guaaaggcga 4501 aacc------ ---------- -->------- ---------- ---------- ---------- 4561 ---------a uuugaAAUGA UCGG-AGU-G AAGUUGACAC AAGGUACC-G GUA-UG(GGA 4621 -A)CUU-GC- CGGUGGAGCA ---------| UGAUGAACAG ACCAAUAUAA AUGCCcacac 4681 acgg------ ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- --------|| ||| // LOCUS mt.P.tetra 5213 bp RNA RNA ~?~???? DEFINITION Mitochondrion Paramecium tetraurelia. ACCESSION No information KEYWORDS No information. SOURCE Mitochondrion Paramecium tetraurelia. ORGANISM Mitochondrion Paramecium tetraurelia. REFERENCE 1 (bases 1 to 1718) AUTHORS No information JOURNAL mt.P.tetraurelia:who:published STANDARD No information COMMENTS Organism information Culture collection: ? Sequence information (bases 1 to 5213) Corresponding GenBank entry: K01751 Phylo:Mitochondria,Protozoan,Paramecium DEFINITION Paramecium tetraurelia mitochondrial small subunit rRNA gene. SOURCE Paramecium tetraurelia mitochondrial DNA (stock 51). ORGANISM Mitochondrion Paramecium tetraurelia Eukaryota; Animalia; Protozoa; Ciliophora; Oligohymenophora; Hymenostomata; Hymenostomatida; Tetrahymenina; Glaucomidae. REFERENCE 1 (bases 1 to 1716) AUTHORS Seilhamer,J.J., Olsen,G.J. and Cummings,D.J. TITLE Paramecium mitochondrial genes: I. Small subunit rRNA gene sequence and microevolution JOURNAL J. Biol. Chem. 259, 5167-5172 (1984) COMMENT [1] the overall rRNA gene sequence was 94% conserved between the two species (primaurelia and tetraurelia), and the nucleotide differences consisted of 53% transitions, 37% transversions, and 9% insertions plus deletions. These subsitutions were somewhat clustered, and the two most divergent regions coincided with the gene boundaries. [1] according to nuclease S1 data, the small subunit rRNA gene starts in the region (bases 23 to 44) and stops in the region (bases 1698 to 1713). NCBI gi: 342986 FEATURES Location/Qualifiers source 1..1716 /organism="Paramecium tetraurelia" /mitochondrion BASE COUNT 559 a 272 c 347 g 497 t 3538 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ----|----- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 -------uuu aguugcagcc angcugcaua cuuggaugua agaauucuuu uuuagGAGUG 661 (UGA-)U-CU U|AGCUU-UG AUUUAACGCU -A-AUCA-AA |UG-CA--UU ACAC-A-CGC 721 -AAGUUU-UA UUuua|caca agaaccu(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- ---------- -)uc------ 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- -------uuc uuugc(uuaa aau)-gcaaa gaucuagu|u 961 uuaaA-AU|A GCGUAUUGGU GCGUAA-aAU A|UGU-CUuu --uu---auu CGUAU-UGUA 1021 CCU----U-- --AG---(au ag-g)---CU ---------- AGGU------ ---------- 1081 ---------- ------uuuc uuccuuuuaa gaagu(uuaa ugccac)cca aaaaaaauuu 1141 u---uuaaaa aaaucgauac uua(agua)u ugaacucuuu uuuugau--- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ------CCAA UAGGAAAAA- --AGAUA-UA |g-------- -AGCGCUU-- 1321 -CGAAUUCGA AG-GG(g--- -gg------- ---------- ---------- ------)CCA 1381 CUUGG|---- GCCUC--CUG C|GCUUA-GC UG|---AUUU (GUGA--)GA AGAAUCAGC| 1441 CACAUACAGG UA(UGUGA-- AA-)GACCUU A|Uc-----( u-cg-)---- -gA----C-A 1501 GAA|GUG-GG GAAUUUUGGG C-AAUGCGC( ---------- ----UUAA)G CGUGA-CCC| 1561 A|-GCAA-A- UU-GAU---- -GUUGCGGAA --GAAa-aua (--------- agug------ 1621 --------)a gggugc-cuU -GCA|----- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ----gcaaug ugggau---- ---------- ---------- -augccucuu ugacuuuuuu 1801 uaaacgcagg ccagaaacga guauaauuaa gcuaa----- ---------- ---------- 1861 ---------- ---------- ---------- --------gu uuuguuagAA GCUAU|-GGC 1921 -CAA-U--AC AUGU-G(-CC AGCAGCC-GC -GGU-AA)-U ACAUGA|--- -GUA-GCU-- 1981 AGCGU-UAAU CGU--CCUUA UUGAGC|GUA CAGAGUGAGU -C-GGCG|GU Cauaac-aau 2041 |uaauaacua uuuuu----- -------(-- ---auau)-- ----a----- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- --------aa aaga------ --uauuaa-- ---------- 2221 ---------- ---------- ---------- ---------- ------ua|A AAAGGAC-UA 2281 G---UGAUUU -UU-UUUU-A -UGUAA--GU -----|UGAG CUUGUA-AAC ---UAGUG(A 2341 UAAAA)UAC- AGG---GAGU UUAC-AGG-A ACA------- ----UUCGAC --GC(-GAAA 2401 -)GC|G---- ----ACUAAC A-AUUAA-A- AA---AUGAC GCU--AUAUC ACGAA-AGUA 2461 U-AGG---UA AUGAAAAGG( cauuuuaaa) CCUA-GUAG| -UCUA-UAC- UGUAAA-AGA 2521 U--GAGU-AU |UU|------ ------(-aa uac------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---)------ --------UA AGU(UAAC)A CA-aAAAUAC 2701 U-C|--C|GC U-UGGG-UAG UAAAGCC(-- -GCAA--)GU CAG--AAACU UAACAGAA-U 2761 UG|GCGGGG- ACUUGU---U CAAACGGU|G GAGCAUGU-G |GUUUAA-UG CG(AUAAUCC 2821 A--------- ----)CGUAA A-ACCUUACC AGCGU-uaaa uuuuuuucuu uaguuaagcu 2881 (-------uc au-)ggcuaa aa-uuu(-uu ag)aaa-<-- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ->aaa-ag-a g--A---UGG UAU-UG|CA- 3121 |UG|-GC--U |G------UC GU-CA|G-UU CGU-|GUU(U --UGA)AAUU UAGAA(UUA- 3181 AGU)UUUAU- A-AACGAACG CAA-CCCUUG -----UUUUG UAUG------ -----(uuu- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|----AA UAC-AAAAUA aaugauu-aa (-gga-a)uu auucauuuu- 3781 -agcuagA-A GGCUGA-AGU CAAAGUCCUU A|CGGU|CUG CGU------- ---------A 3841 C-G-CU-GGG CU-ACA--CA -CGUGUUACA AU--GGUAAA A-ACAA-UAG AA--Aaaca- 3901 aagc<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--u caa--)ccuu uaguu----U UU-A-AAAAA UUA-CCACAG 4021 ---------- -----UACGA --AUUGU-UU U-C(------ ---------- ---------- 4081 ---------- ---------- UGAAAc-uu) G-GA-A--GC -A--UGAAG- -AAGAAAUCG 4141 U-U--AGUAA U-CGCAAA(- UAAGU-AU-- --)GNUGCGG U-GAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -AUA--UAAG 4261 UCAAGU-CC- UGCACACA-C -UGCCCAUCA C-GCU--CAA AGA-GUUuua aau------- 4321 ---------- ---------- ---------- ---------- -(------)< cuagaagcu- 4381 gaauu-uagg augugacccu acccauuu-- uuuu-uuuua aaa-aaacuc gccggugcac 4441 caaacac-cg guguucuaaa caagcu-acu uguugucagc acaaagaaga guaaaggcga 4501 aacc------ ---------- -->------- ---------- ---------- ---------- 4561 ---------a uuugaAAUGA UCGG-AGU-G AAGUUGACAC AAGGUACC-G GUA-UG(GGA 4621 -A)CUU-GC- CGGUGGAGCA ---------| AGGUGAACAG ACCAAUGCAU GCACC~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS mt.T.pyrif 5213 bp RNA RNA ~?~???? DEFINITION Mitochondrion Tetrahymena pyriformis str. ST (clone pAT16, subclone TmX2.3). ACCESSION No information KEYWORDS No information. SOURCE Mitochondrion Tetrahymena pyriformis str. ST (clone pAT16, subclone TmX2.3). ORGANISM Mitochondrion Tetrahymena pyriformis. REFERENCE 1 (bases 1 to 1718) AUTHORS No information JOURNAL J. Biol. Chem. 261, 5187-5193 (1986) STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: M12714 Phylo:Mitochondria,Protozoan,Tetrahymena DEFINITION Tetrahymena pyriformis mitochondrial small subunit rRNA gene. ORGANISM Mitochondrion Tetrahymena pyriformis Eukaryota; Animalia; Protozoa; Ciliophora; Oligohymenophora; Hymenostomata; Hymenostomatida; Tetrahymenina; Tetrahymenidae. REFERENCE 1 (bases 1 to 2504) AUTHORS Schnare,M.N., Heinonen,T.Y., Young,P.G. and Gray,M.W. TITLE A discontinuous small subunit ribosomal RNA in Tetrahymena pyriformis mitochondria COMMENT Draft entry and sequence in computer readable form for [1] kindly provided by M.W.Gray, 30-JUL-1986. NCBI gi: 343462 FEATURES Location/Qualifiers rRNA 783..990 /note="alpha component of small subunit ribosomal RNA" rRNA 788..990 /note="alpha component of small subunit ribosomal RNA" rRNA 1045..2451 /note="beta component of small subunit ribosomal RNA (14S rRNA)" source 1..2504 /organism="Tetrahymena pyriformis" /mitochondrion BASE COUNT 612 a 212 c 300 g 545 t 3544 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ----|----- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- --aaaaaaaa uuagguugua aucaaaaaau uuauuGAGUG 661 (UGA-)U-CA U|GGCUC-GG GAUUAACGCU -A-AUUA-GA |CG-CC--UA ACAC-A-UGC 721 -GAGUUU-UA UAuau|-auu agau---(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- ---------- -)(aacaauu 841 aa)------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- -aucuaa--- 961 -augU-AU|A GCGUCAAGGU GAGUAU--AA U|ACAuAA-a --ua---UGC CUUUA-AGCC 1021 UAUU------ -------(ua aa-u)----- ---------A AUAG------ ---------- 1081 ---------- ---------- uuaauuuuaa aacaa(uaac aaaugc)uau a[aaaaacaa 1141 u---uauaaa uuauaauaaa caa(uca-)u auaauucuuu aaaaccaaaa aa]auuauua 1201 gca------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ------GCUU AAAGAUUAA- --UUUGU-AU |--------- -AAUAUUA-- 1321 -GGUAAUUAU UU-cuaaaau uguuuaauaa aua------a auauauuuau uuuuag-UaA 1381 AAUAA|---- GCCU---AGA U|GUUUA-GU UG|---AAUU (UAGA--)GA UUGUUCAAC| 1441 CACAUACGGG UA(UGAAA-- AC-)UACCCU A|Uc-----( uauuu)---- -gA----C-A 1501 GCA|GUG-AG GAAUUUUGGA C-AAUAUGC( ---------- ----GAAA)G CAUGA-UCC| 1561 A|-GCGA-A- CU-AAU---- -GGAAACGAA --GAAG-AUA (--------g acaa------ 1621 --------)U AUUGUA-AAG -UUU|a---- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ----gugcg- -agaau---- ---------- ---------- --uaacaaau gaguau---- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- --------au ucuaggAgAA GCUCU|-GGC 1921 -UAA-U--AC AUGU-G(-CC AGCAGCC-GC -GGU-AA)-U ACAUGA|--- -GGA-GCG-- 1981 AGCGU-UAUC CAU--AUUGA CUGAGU|GUA UUAAAUACGU -A-GGAU|GU UAUAAU-UAC 2041 |uac-uuuaa aaaug----u aauaaaaa-- --cuaaauac u--------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ------guag uu-------- ---------- 2221 ---------- ---------- ---------- ---------- -----auu|u uauaAAC-AA 2281 u-----AAUU -AU-AAUU-A -AGAGU--AG -----|GAGA CUUAUA-GAA ---CAACG(A 2341 UUAAA)UGU- AGU---UACA CUAU-AUA-G CUA------- ----GCCAUA -AAC(-UAAG 2401 -)GU|G---- ----CUUCUC U-AAUUA-U- AA---UUUUA UCU--GAUGU AUGAA-AGUA 2461 C-GGG---UA UCGAUGAGG( AcUAGucuC) CCUA-GUAG| -UCCG-UAC- UGUAAA-AGA 2521 U--GAAU-AC |UU|Uaugaa uu----(-ac g--------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---)-----a auucAGGAAU AGC(UAAC)G C--aAAGUAU 2701 U-C|--U|GC U-UGGG-GAG UAUUAUC(-- -GCAA--)GA UUA--AAACU UAACUGAA-U 2761 UG|GCGGGA- AUUUGU---U CGAACGGU|G GAACAUGU-G |GUUUAA-UG CG(AUAAUCC 2821 A--------- ----)CGCAA A-AUCUUACC AACGUUUuag -gcuuua--- ---------- 2881 ---------- ---------- ---------- --------ua-aa-g u--A---CGG AAU-UG|CA- 3121 |UG|-GC--U |G------UC GU-CA|G-UU CGU-|GCU(G --UGA)AGUU UAGGA(UUA- 3181 AGU)UCUUUu u-AACGAAUG CAA-CCCUAU ---------- ---------- -----(---- 3241 --)--- ---|------ ---------- ---guau-ac (-cug-a)au aua-gggguu 3781 ------UU-A GGCUGA-AGU C-AAGUCCCU A|UGGU|CUU UAU------- ---------A 3841 C-G-UU-GGG CU-ACA--CA -CGUGUUACA AG--GGUAAA A-ACAA-AGA GA--CGCAA- 3901 UAGA<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--G UAA--)UCUG -GAGCAAAAC UC-U-AAAAA UUA-CCUCAG 4021 ---------- -----UUCAG --AUUGU-CU C-A(------ ---------- ---------- 4081 ---------- ---------- UGAAAu-uc) U-GA-G--GC -A--UGAAG- -AUGAAAUCG 4141 U-U--AGUAA U-UGUAAA(- UUAAA-AU-- --)GUUACAG U-GAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -AUA--UUAG 4261 UCAAAU-UU- UGCACACA-C -CGCCCAUCA C-GCU--CGG AAA-GUCaau auu-ag---- 4321 ---------- ---------- ---------- ---------- -(------)< cggaagauu- 4381 ugaaa-aucu cuacggaaua auaaauuu-- aaua-uuaau uua-uuaguc auuauguuuu 4441 uuuuuaacgc uguggaugga aaguaguauc uaau------ ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 -------cua auauuGGUAA UCUG-AGU-G AAGUUGACAC AAGGUACU-G GUA-GG(GGA 4621 -A)CCU-GU- UGGUGGAAUA ---------| uauuauuau~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS mt.N.ovali 5213 bp RNA RNA 15-DEC-1998 DEFINITION Nyctotherus ovalis.; small subunit ribosomal RNA; small subunit rRNA. ACCESSION Y16670 KEYWORDS small subunit ribosomal RNA; small subunit rRNA. SOURCE Nyctotherus ovalis. ORGANISM Nyctotherus ovalis. REFERENCE 1 (bases 1 to 1701) AUTHORS Vogels,G., Veenhuis,M. and Hackstein,J. Akhmanova,A., Vonken,F., van Alen,T., Van Hoek,A., Boxma,B., TITLE A hydrogenosome with a genome JOURNAL Nature 396, 527-528 (1998) STANDARD No information REFERENCE 2 (bases 1 to 1701) AUTHORS Akhmanova,A.S. TITLE Direct Submission JOURNAL Submitted (26-FEB-1998) A.S. Akhmanova, Department of Cell Biology and Genetics, Erasmus University Rotterdam, PO Box 1738, 3000 DR Rotterdam, NETHERLANDS STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: Y16670 BASE COUNT 464 a 323 c 459 g 455 t 3512 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ucguuuuagu uggagaacgu aauucacuag cuauuGAGUA 661 (UGA-)C-UA U|AGCUC-UG AGUGAAUGCG -U-GCUG-GC |GA-UC--UA AUAC-A-UGC 721 -CAGUCG-AC agccu|uaca -------(uu auaguaaguc uguggcguag u--------- 781 ---------- ---------- ---------- ---------- ---------- -)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- -----ugu-- 961 -gagc-aa-g ag-cggagGU Guuaagccua g-ggu-uuga --cau--aaa gagga-ccua 1021 uacu---u-- --uu---(cc ga-a)---aa ---------- -uau-uguuc uggaauaaaa 1081 ugucaaauac uguucgagcg acuauucgau uauguggggc cuuuaugguc gauuagauag 1141 ucucucgugg caaaaagaaa guu------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- -------ugc ccgggucgc- --aucuc-cg -ug------- -cgguc---- 1321 -ugguu-aug au-ac(guag aua------- ---------- ---------- ------)gua 1381 uua-g----- cca----aua a|CCGUA-GG UG|---AACU (GAGA--)GG UUCUACACC| 1441 CACAUC-GUU AA(UGAGA-- AA-)--AACG A|Ucggggc( a-uau)uccc cgA----C-U 1501 GCA|GUA-gu gaaucUUGAC C-AAUGGGC( ---------- ----UGUU)G CCUAA-GUU| 1561 U|-GUC--G- UC-GGC---- -ggguga--- -----a-gcu (--------- auc------- 1621 --------)a gcu------u -cau|----- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ----aggucu auugagaaa- ---------- ---------- ---------- ---------- 1801 ---------- ---------- -uauaau-ga gcuaa----- ---------- ---------- 1861 ---------- ---------- ---------- -------ucu cgacagagAA UGAGU|-GAC 1921 -UAA-C---A ACGU-G(-CC AGCAGUU-GC -GGC-AA)-G ACGUUG|--- aACU-CGA-- 1981 AGCGU-UACU GGU--CCUGA UUGGGC|GUA AAGUAUAGCU -A-GGCG|GC Uaacgu-agu 2041 |uaugguuua uaaac----- -------(-- --gggcg)-- ----g----- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- --------uu agaacgugca cuccauaa-- ---------- 2221 ---------- ---------- ---------- ---------- -----aac|c guuaUGC-u- 2281 ----ugGGAU -AU-AUCG-U -AGGUC--UU uc---|GGUA CGCGCA-CCU ---UAGCG(A 2341 UAAAA)UGC- GGA---AAGG GUGC-UAU-G GAC------- ---aUUCCAG --UG(-GCCA 2401 -)CG|G---- ---cGGGGCU C-AGAUA-U- AU---CCGAC GCU--GAACU AUUAA-AGUG 2461 U-GGG---GG CCAAAAAGG( AUUAGGGAC) CCUU-GUAG| -CCCA-CAC- CCUGAAuucA 2521 U--GAAC-AU |UG|aucggu auu---(-ua au-------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---)----gg uacugau-UC AGC(UUAC)G CG-uAAAUGU 2701 U-U|--C|GC C-UGGG-GAA UAAUACC(-- -GCAA--)GG UAG--AAAGC UAAUGAGA-U 2761 UG|GCGGGA- GCUUGU---A UAAACAAU|G GGGCACGU-G |GCUCAA-UU CG(ACAAUAC 2821 A--------- ----)CGUAA A-AUCUUACC CGUAA-gaug ugaggugcg- ---uuacgua 2881 (aucuguagu uuc)uacgua g--------- -------<-- ---------- ---------- 2941 ---------- ------acgc gacaacgccu aaguugcguc ugguuaugua aucgcgacua 3001 uagacagaac acgauaaaua ugugcuggcu gcgua----- ---------- ---------- 3061 ---------- ---------- ---------a a>cga-cc-u c--u---GGG UGC-UG|CA- 3121 |UG|-GC--U |G------UC GU-AA|A-UU CAU-|GCC(G --UGG)GGUG UGGUU(UUU- 3181 GGU)AAC-U- G-AAUGAAUG CGA-CCUAUG ---------- ---------- -----(---- 3241 --)--- ---|------ --------gu aagucua-ua (-ucg-u)ug cggaggucc- 3781 -caagguc-u aggaCA-CGU C-AAGUCAAC A|UGGU|CUU AAU------- ---------A 3841 U-G-CG-GGG CU-GCA--CA -UGUGCCACA AG--GGCAAA G-ACAA-AAU Ga--ugcua- 3901 aggu<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--- gcg--)agcc aaagc--aau cuucuAAAAA UUG-UCACAG 4021 ---------- -----UUCAG --AUUGU-AC G-U(------ ---------- ---------- 4081 ---------- ---------- UGCAAa-uc) A-UG-U--AC -A--UUAAG- -UAGUAAUUG 4141 U-U--AGUAA U-CGUACC(- UGGGU-A--- --)A-AGUGC C-acgguga- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -AUG--UUAU 4261 UCGAGC-UU- UGCACACA-C -cGCCCAUCA C-GCU--agg gga-gagacc ggug------ 4321 ---------- ---------- ---------- ---------- -(------)< cuggaa---- 4381 gaauu--auc uuacaguuug cggacugg-- gggu-uuuua aaa------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ------ggaa acgguuucaa ccag-agc-u AAGUUGACAC AAGGUAGC-G GUA-GU(AGA 4621 -A)ACU-GC- UGCUGGAGUA ---------| gcuaucaaag ugggauaaug uacc------ 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- --------|| ||| // LOCUS (3)-CHLORA 5213 bp RNA RNA 25-JAN-1994 DEFINITION CHLORARACHNIOPHYCEAE. ACCESSION No information KEYWORDS No information. SOURCE CHLORARACHNIOPHYCEAE. ORGANISM CHLORARACHNIOPHYCEAE. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: DIVIDER BASE COUNT 0 a 0 c 0 g 0 t 5213 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ----|..... .......... .......... 541 .......... .......... .......... .......... .......... .......... 601 .......... .......... .......... .......... .......... .......... 661 .......-.. .......... .......... ..-....... |......... ....-..... 721 .......-.. .....|.... ........-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- ------.... .......... 841 .......... .......... .......... .......... .......... .......... 901 .......... .......... .......... .......... .......... .......... 961 .....-..|. .......... .......... .|........ -......... .....-.... 1021 .......... ....---... ..-..---.. .......... .......... .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .......... .......... .......... .......... .......... 1201 .......... .......... .......... .......... .......... .......... 1261 .......... .......... .........- .......... ..----.... ........-- 1321 .......... .......... .......... .......... .......... .......... 1381 ......---. .......... .......-.. .......... .......... .......... 1441 .......... ........-. ..-....... .......... .......... ........-. 1501 ...|...-.. .......... .......... .......... .......... .....-...| 1561 .......... .......... .......... .......... .--....... .......... 1621 .......... .......... .......... .......... .......... .......... 1681 .......... .......... .......... .......... .......... .......... 1741 .......... .......... .......... .......... .......... .......... 1801 .......... .......... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .......... .......... 1921 .......... .......-.. .......... -.......-. .......... .......... 1981 .....-.... ...--..... .......... .......... -......... .......... 2041 .......... .....----. .......... .......... .....----- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- --------.. .......... .......... .......... 2221 .......... .......... .......... .......... ........|. .......-.. 2281 .......... -......... ......--.. .-........ .......... ---....... 2341 .......... ...-...... ....-..... .......... .......... .......... 2401 ....|..... .......... .......... .......... .......... .....-.... 2461 .....--... .......... .......... .......... .......... .......... 2521 .--....-.. |......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... .......... 2701 .-..-..... .......... .......... .......... .......... .......... 2761 ..|....... .......... ........|. ........-. |......... .......... 2821 .--------- ----...... .-........ .......... .......... .......... 2881 .....---.. ..-....... .......... .......... .......... .......... 2941 .......... .......... .......... .......... .......... .......... 3001 .......... .......... .......... .......... .......... .......... 3061 .......... .......... .......... .......... .--....... ...-.....- 3121 .......--. |......... .......-.. .......... .-........ .........- 3181 .......... .-........ .......... .......... .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .......... .......... .......... 3361 .......... .......... .......... .......... .....--... .......... 3421 .......... .......... .......... .......... .......... .......... 3481 .......... ........-- --........ .......... .......... .......... 3541 .......... .......... .......... .......... .......... .......... 3601 .......... .......... .......... .......... .......... .......... 3661 .......... .......... .......... .......... .......... .......... 3721 .......... .......... .......... .......... .....-.... .......... 3781 .......... .......... .......... ......|... ...------- -------... 3841 ...-..-... ..-....... .......... ..-....... ......-... ..--...... 3901 .......... .......... .......... .......... .......... .......... 3961 .......... .......... ...-...... .......... .......... .......... 4021 ......---. .......... .-........ .-........ .......... .......... 4081 .......... .......... ......-... .......... .........- .......... 4141 .-.-...... .......... .......... .......... .-........ .......... 4201 .......... .......... .......... .......... .......... .......... 4261 .......... .......... .......... .-........ ...-...... .......... 4321 .......... ......-... .........- .......... -......... .........- 4381 .....-.... .......... ........-- ....-..... .......... .......... 4441 .......... .......... .......... .......... .......... .......... 4501 .......... .......... ...--..... ........-- .......... .......... 4561 .......... .......... ........-. .......... ........-. ...-...... 4621 -.....-... .......... .......... .......... .......... .......... 4681 .......... .......... .......... .......... .......... .......... 4741 .......... .......... .......... .......... .......... .......... 4801 .......... .......... .......... .......... .......... .......... 4861 .......... .......... .......... .......... .......... .......... 4921 .......... .......... .......... .......... .......... .......... 4981 .......... .......... .......... .......... .......... .......... 5041 .......... .......... .......... .......... .......... .......... 5101 .......... .......... .......... .......... .......... .......... 5161 .......... .......... .......... .......... ........|| ||| // LOCUS mt.Chlo.sp 5213 bp RNA RNA 11-JAN-191 DEFINITION Chlorarachnion sp. ACCESSION No information KEYWORDS No information. SOURCE Chlorarachnion sp. ORGANISM Chlorarachnion sp. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: U36908 LOCUS U36908 1911 bp DNA PLN 26-OCT-1995 DEFINITION Chlorarachnion sp. CCMP 621 small subunit ribosomal protein 14 (rps14) gene, partial cds, small subunit ribosomal protein 12 (rps12) gene, complete cds, and small subunit ribosomal RNA gene. ACCESSION U36908 KEYWORDS . SOURCE Chlorarachnion sp. strain=CCMP 621. ORGANISM Mitochondrion Chlorarachnion sp. Eukaryotae; mitochondrial eukaryotes; Chlorarachniophyceae; Chlorarachnion; Chlorarachnion sp. REFERENCE 1 (bases 1 to 1911) AUTHORS Gilson,R., McFadden,G.I. and Waller,R.F. TITLE Preliminary Characterisation of Chlorarachniophyte Mitochondrial DNA JOURNAL J. Eukaryot. Microbiol. 42 (1995) In press REFERENCE 2 (bases 1 to 1911) AUTHORS Gilson,R., McFadden,G.I. and Waller,R.F. TITLE Direct Submission JOURNAL Submitted (21-SEP-1995) Paul Gilson, Botany, University of Melbourne, Melbourne, Vic 3052, Australia COMMENT NCBI gi: 1040983 FEATURES Location/Qualifiers source 1..1911 /organism="Chlorarachnion sp." /strain="CCMP 621" /mitochondrion /note="derived from two contiguous HindIII restriction fragments of mitochondrial DNA. The entry contains the complete sequence of one HindIII fragment and a partial sequence of the next contiguous HindIII fragment" CDS <1..163 /gene="rps14" /note="NCBI gi: 1040984" /codon_start=2 /product="small subunit ribosomal protein 14" /translation="SLRLALICPGLLPIRNICVATSRSRGVFRKYKLSRIMLRDMGLQ GLLPGFKKR" CDS 168..548 /gene="rps12" /note="NCBI gi: 1040985" /codon_start=1 /product="small subunit ribosomal protein 12" /translation="MATSNQMGANTRSKKKKKNLKKALLGCPQKRGVCMRLLTRSPKK PNSAQRRVAKVRLSTKRVIFAHIPGEGHNLSPFSVVLVRGGNVRDLPGVRYKTIRGVK DLAPVLSRTNGRSKYGTKRPKVHT" rRNA <572..>1911 /note="the exact ends of the rRNA are uncertain" /product="small subunit ribosomal RNA" BASE COUNT 556 a 395 c 524 g 435 t 1 others ORIGIN BASE COUNT 372 a 283 c 389 g 295 t 3874 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ----|----- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------U AUACCGGGUU 661 (UGA-)U-CC U|GGCUC-AG AGUGAACGCU -A-GGGG-UA |CG-CA--UA ACAC-A-UGC 721 -GAGUCA--a cg---|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------uau -)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- --------|- 961 ----c-gu|G GCGAACGGGU GAKUAC--AG C|AGG-caau --ua---CGC CCGGU-AGcc 1021 cagaa----- -------(ua aa--)----- -------uuc uggauaa--- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- aaa------- -ga(uuaa)u c|-------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ------GUUG CCGGAUAUG- --ucUGU-GU |--------- -AGGAUUA-- 1321 -GAUAAUC-- -----(GUAG A--------- ---------- ---------- ------)--- 1381 ---GA|---- GUCGA--UGA U|CCUUA-GU UG|a--AUCU (GGGAA-)GG AUGCACAGC| 1441 CACAUU-GGA AC(UGAGA-C AA-)GGUCCA A|gcucc--( agua-)--gg agg----C-A 1501 GCA|GUG-AG GAAUAUUGGG C-AAUGGGC( ---------- ----GAAA)G CCUGA-CCC| 1561 A|-ACGA-U- AC-CCC---- -GUGAUUGAA --GAAG-AC- (--------- caag------ 1621 --------)- GUCGUAAAGG -UAC|----- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ------gcgg ucaguaaaga uua------- -(-------- )--------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- cgacgguaac uggccaaaaA GCCCC|-GGC 1921 -UAA-C---U CCGU-G(-CC AGCAGCC-GC -GGU-AA)-U ACGGGG|--- -GGG-GCA-- 1981 AGUGU-UAUU CGC--AAUGA CUGGGC|GUA AAGCGUGCGU -A-GGCG|gc uugcaauuag 2041 |cccuu--uu gcgaa----a gcuaggg(-- --cucaa)cc uuagu----- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- --------gu gacuuuuggc ---------- ---------- 2221 ---------- ---------- ---------- ---------- -------A|C AGCAAGC-UA 2281 G-----AGUU -UG-GUAG-G -GGUUG--GU -----|AGAA UUCUCA-GAA ---GAGGG(G 2341 UACAA)UCC- AGG---GACA CUGA-GAC-G AAU------- ----ACCUAG -GGC(-GAAG 2401 -)GC|A---- ----GCCAAC U-GGACC-AU -A---CUGAC GCU--AAAGC ACGGA-AGCG 2461 U-AGG---UA GCAAAUAGG( AUUAGAUAC) CCUA-GUAG| -UCUA-CGC- CGUCAA-CGA 2521 U--GGGU-AU |UG|GCAAu- ------(--u aa-------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---)------ --auugc-UA AGC(UAAC)G CGUUAAAUAC 2701 C-C|--C|GC C-UGGG-GAG UACGGUC(-- -GCAA--)GA UUA--AAACU UAAAGGAA-U 2761 UG|ACGGGA- GCUUGC---G CAAGCGGU|G GGGCAUGC-G |GUUUAA-UC CG(AUAUUAC 2821 A--------- ----)CGUAA A-AUCUUACC AACCCUUgaa caa------- ---------- 2881 (--------- ---)------ ------(--- --)----<-- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ->-------- A--C---AGG UGU-UG|CA- 3121 |UG|-GC--U |G------UC GU-CA|G-CC CGU-|GUC(G --UAA)GAUG UUUGG(UUA- 3181 ACU)CCU-U- U-AACGGGCG UAA-CCCCU- -----cuc-- ---------- -----(uucg 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---------- -----gagca -CCGCUG-UU (GAAA-U)AA CAG-GGGGAG 3781 -----GUA-G GGAUCA-CGC C-AAGUCGUC A|UGGC|CCU GAU------- ---------G 3841 G-G-UU-GGG CU-ACA--CA -UGUGUCACA UA--GUUGCA U-ACAG-CGA GA--GGCAA- 3901 agac<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--A AAA--)GUCG -GAGCA-AUC U-AU-AACGU GCA-ACCCAG 4021 ---------- -----UUCGG --AUUAU-CU C-C(------ ---------- ---------- 4081 ---------- ---------- UGCAAC-UC) G-GA-G--AU -A--UGAAG- -GCGUAAUCG 4141 C-U--AGUAA U-CGCGUA(- UCAUA-AU-- --)GGCGCGG U-GAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -UAC--GUGA 4261 UCAAGC-UU- UGUACACA-C -CGGCCGUCA C-GAC--cgg aaa-gucagc uuu-gcuuga 4321 augguu-cgc agugau-cgc uu-------- ---------- -gcuucgug- ---------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ------aagc guaacugucu 4561 cuugauagua gggucgaUGA UCGG-GGC-G AAGUCGUAAC AGGGUAGC-U GUA-GG(GGA 4621 -A)CCU-GU- AGCUGGAGAA AA-------| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS (3)-F/M_GR 5213 bp RNA RNA 25-JAN-1994 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: DIVIDER BASE COUNT 0 a 0 c 0 g 0 t 5213 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ----|..... .......... .......... 541 .......... .......... .......... .......... .......... .......... 601 .......... .......... .......... .......... .......... .......... 661 .......-.. .......... .......... ..-....... |......... ....-..... 721 .......-.. .....|.... ........-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- ------.... .......... 841 .......... .......... .......... .......... .......... .......... 901 .......... .......... .......... .......... .......... .......... 961 .....-..|. .......... .......... .|........ -......... .....-.... 1021 .......... ....---... ..-..---.. .......... .......... .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .......... .......... .......... .......... .......... 1201 .......... .......... .......... .......... .......... .......... 1261 .......... .......... .........- .......... ..----.... ........-- 1321 .......... .......... .......... .......... .......... .......... 1381 ......---. .......... .......-.. .......... .......... .......... 1441 .......... ........-. ..-....... .......... .......... ........-. 1501 ...|...-.. .......... .......... .......... .......... .....-...| 1561 .......... .......... .......... .......... .--....... .......... 1621 .......... .......... .......... .......... .......... .......... 1681 .......... .......... .......... .......... .......... .......... 1741 .......... .......... .......... .......... .......... .......... 1801 .......... .......... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .......... .......... 1921 .......... .......-.. .......... -.......-. .......... .......... 1981 .....-.... ...--..... .......... .......... -......... .......... 2041 .......... .....----. .......... .......... .....----- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- --------.. .......... .......... .......... 2221 .......... .......... .......... .......... ........|. .......-.. 2281 .......... -......... ......--.. .-........ .......... ---....... 2341 .......... ...-...... ....-..... .......... .......... .......... 2401 ....|..... .......... .......... .......... .......... .....-.... 2461 .....--... .......... .......... .......... .......... .......... 2521 .--....-.. |......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... .......... 2701 .-..-..... .......... .......... .......... .......... .......... 2761 ..|....... .......... ........|. ........-. |......... .......... 2821 .--------- ----...... .-........ .......... .......... .......... 2881 .....---.. ..-....... .......... .......... .......... .......... 2941 .......... .......... .......... .......... .......... .......... 3001 .......... .......... .......... .......... .......... .......... 3061 .......... .......... .......... .......... .--....... ...-.....- 3121 .......--. |......... .......-.. .......... .-........ .........- 3181 .......... .-........ .......... .......... .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .......... .......... .......... 3361 .......... .......... .......... .......... .....--... .......... 3421 .......... .......... .......... .......... .......... .......... 3481 .......... ........-- --........ .......... .......... .......... 3541 .......... .......... .......... .......... .......... .......... 3601 .......... .......... .......... .......... .......... .......... 3661 .......... .......... .......... .......... .......... .......... 3721 .......... .......... .......... .......... .....-.... .......... 3781 .......... .......... .......... ......|... ...------- -------... 3841 ...-..-... ..-....... .......... ..-....... ......-... ..--...... 3901 .......... .......... .......... .......... .......... .......... 3961 .......... .......... ...-...... .......... .......... .......... 4021 ......---. .......... .-........ .-........ .......... .......... 4081 .......... .......... ......-... .......... .........- .......... 4141 .-.-...... .......... .......... .......... .-........ .......... 4201 .......... .......... .......... .......... .......... .......... 4261 .......... .......... .......... .-........ ...-...... .......... 4321 .......... ......-... .........- .......... -......... .........- 4381 .....-.... .......... ........-- ....-..... .......... .......... 4441 .......... .......... .......... .......... .......... .......... 4501 .......... .......... ...--..... ........-- .......... .......... 4561 .......... .......... ........-. .......... ........-. ...-...... 4621 -.....-... .......... .......... .......... .......... .......... 4681 .......... .......... .......... .......... .......... .......... 4741 .......... .......... .......... .......... .......... .......... 4801 .......... .......... .......... .......... .......... .......... 4861 .......... .......... .......... .......... .......... .......... 4921 .......... .......... .......... .......... .......... .......... 4981 .......... .......... .......... .......... .......... .......... 5041 .......... .......... .......... .......... .......... .......... 5101 .......... .......... .......... .......... .......... .......... 5161 .......... .......... .......... .......... ........|| ||| // LOCUS (4)-FUNGI 5213 bp RNA RNA 25-JAN-1994 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: DIVIDER BASE COUNT 0 a 0 c 0 g 0 t 5213 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ----|..... .......... .......... 541 .......... .......... .......... .......... .......... .......... 601 .......... .......... .......... .......... .......... .......... 661 .......-.. .......... .......... ..-....... |......... ....-..... 721 .......-.. .....|.... ........-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- ------.... .......... 841 .......... .......... .......... .......... .......... .......... 901 .......... .......... .......... .......... .......... .......... 961 .....-..|. .......... .......... .|........ -......... .....-.... 1021 .......... ....---... ..-..---.. .......... .......... .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .......... .......... .......... .......... .......... 1201 .......... .......... .......... .......... .......... .......... 1261 .......... .......... .........- .......... ..----.... ........-- 1321 .......... .......... .......... .......... .......... .......... 1381 ......---. .......... .......-.. .......... .......... .......... 1441 .......... ........-. ..-....... .......... .......... ........-. 1501 ...|...-.. .......... .......... .......... .......... .....-...| 1561 .......... .......... .......... .......... .--....... .......... 1621 .......... .......... .......... .......... .......... .......... 1681 .......... .......... .......... .......... .......... .......... 1741 .......... .......... .......... .......... .......... .......... 1801 .......... .......... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .......... .......... 1921 .......... .......-.. .......... -.......-. .......... .......... 1981 .....-.... ...--..... .......... .......... -......... .......... 2041 .......... .....----. .......... .......... .....----- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- --------.. .......... .......... .......... 2221 .......... .......... .......... .......... ........|. .......-.. 2281 .......... -......... ......--.. .-........ .......... ---....... 2341 .......... ...-...... ....-..... .......... .......... .......... 2401 ....|..... .......... .......... .......... .......... .....-.... 2461 .....--... .......... .......... .......... .......... .......... 2521 .--....-.. |......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... .......... 2701 .-..-..... .......... .......... .......... .......... .......... 2761 ..|....... .......... ........|. ........-. |......... .......... 2821 .--------- ----...... .-........ .......... .......... .......... 2881 .....---.. ..-....... .......... .......... .......... .......... 2941 .......... .......... .......... .......... .......... .......... 3001 .......... .......... .......... .......... .......... .......... 3061 .......... .......... .......... .......... .--....... ...-.....- 3121 .......--. |......... .......-.. .......... .-........ .........- 3181 .......... .-........ .......... .......... .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .......... .......... .......... 3361 .......... .......... .......... .......... .....--... .......... 3421 .......... .......... .......... .......... .......... .......... 3481 .......... ........-- --........ .......... .......... .......... 3541 .......... .......... .......... .......... .......... .......... 3601 .......... .......... .......... .......... .......... .......... 3661 .......... .......... .......... .......... .......... .......... 3721 .......... .......... .......... .......... .....-.... .......... 3781 .......... .......... .......... ......|... ...------- -------... 3841 ...-..-... ..-....... .......... ..-....... ......-... ..--...... 3901 .......... .......... .......... .......... .......... .......... 3961 .......... .......... ...-...... .......... .......... .......... 4021 ......---. .......... .-........ .-........ .......... .......... 4081 .......... .......... ......-... .......... .........- .......... 4141 .-.-...... .......... .......... .......... .-........ .......... 4201 .......... .......... .......... .......... .......... .......... 4261 .......... .......... .......... .-........ ...-...... .......... 4321 .......... ......-... .........- .......... -......... .........- 4381 .....-.... .......... ........-- ....-..... .......... .......... 4441 .......... .......... .......... .......... .......... .......... 4501 .......... .......... ...--..... ........-- .......... .......... 4561 .......... .......... ........-. .......... ........-. ...-...... 4621 -.....-... .......... .......... .......... .......... .......... 4681 .......... .......... .......... .......... .......... .......... 4741 .......... .......... .......... .......... .......... .......... 4801 .......... .......... .......... .......... .......... .......... 4861 .......... .......... .......... .......... .......... .......... 4921 .......... .......... .......... .......... .......... .......... 4981 .......... .......... .......... .......... .......... .......... 5041 .......... .......... .......... .......... .......... .......... 5101 .......... .......... .......... .......... .......... .......... 5161 .......... .......... .......... .......... ........|| ||| // LOCUS (5)-ASCOMY 5213 bp RNA RNA 25-JAN-1994 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: DIVIDER BASE COUNT 0 a 0 c 0 g 0 t 5213 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ----|..... .......... .......... 541 .......... .......... .......... .......... .......... .......... 601 .......... .......... .......... .......... .......... .......... 661 .......-.. .......... .......... ..-....... |......... ....-..... 721 .......-.. .....|.... ........-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- ------.... .......... 841 .......... .......... .......... .......... .......... .......... 901 .......... .......... .......... .......... .......... .......... 961 .....-..|. .......... .......... .|........ -......... .....-.... 1021 .......... ....---... ..-..---.. .......... .......... .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .......... .......... .......... .......... .......... 1201 .......... .......... .......... .......... .......... .......... 1261 .......... .......... .........- .......... ..----.... ........-- 1321 .......... .......... .......... .......... .......... .......... 1381 ......---. .......... .......-.. .......... .......... .......... 1441 .......... ........-. ..-....... .......... .......... ........-. 1501 ...|...-.. .......... .......... .......... .......... .....-...| 1561 .......... .......... .......... .......... .--....... .......... 1621 .......... .......... .......... .......... .......... .......... 1681 .......... .......... .......... .......... .......... .......... 1741 .......... .......... .......... .......... .......... .......... 1801 .......... .......... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .......... .......... 1921 .......... .......-.. .......... -.......-. .......... .......... 1981 .....-.... ...--..... .......... .......... -......... .......... 2041 .......... .....----. .......... .......... .....----- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- --------.. .......... .......... .......... 2221 .......... .......... .......... .......... ........|. .......-.. 2281 .......... -......... ......--.. .-........ .......... ---....... 2341 .......... ...-...... ....-..... .......... .......... .......... 2401 ....|..... .......... .......... .......... .......... .....-.... 2461 .....--... .......... .......... .......... .......... .......... 2521 .--....-.. |......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... .......... 2701 .-..-..... .......... .......... .......... .......... .......... 2761 ..|....... .......... ........|. ........-. |......... .......... 2821 .--------- ----...... .-........ .......... .......... .......... 2881 .....---.. ..-....... .......... .......... .......... .......... 2941 .......... .......... .......... .......... .......... .......... 3001 .......... .......... .......... .......... .......... .......... 3061 .......... .......... .......... .......... .--....... ...-.....- 3121 .......--. |......... .......-.. .......... .-........ .........- 3181 .......... .-........ .......... .......... .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .......... .......... .......... 3361 .......... .......... .......... .......... .....--... .......... 3421 .......... .......... .......... .......... .......... .......... 3481 .......... ........-- --........ .......... .......... .......... 3541 .......... .......... .......... .......... .......... .......... 3601 .......... .......... .......... .......... .......... .......... 3661 .......... .......... .......... .......... .......... .......... 3721 .......... .......... .......... .......... .....-.... .......... 3781 .......... .......... .......... ......|... ...------- -------... 3841 ...-..-... ..-....... .......... ..-....... ......-... ..--...... 3901 .......... .......... .......... .......... .......... .......... 3961 .......... .......... ...-...... .......... .......... .......... 4021 ......---. .......... .-........ .-........ .......... .......... 4081 .......... .......... ......-... .......... .........- .......... 4141 .-.-...... .......... .......... .......... .-........ .......... 4201 .......... .......... .......... .......... .......... .......... 4261 .......... .......... .......... .-........ ...-...... .......... 4321 .......... ......-... .........- .......... -......... .........- 4381 .....-.... .......... ........-- ....-..... .......... .......... 4441 .......... .......... .......... .......... .......... .......... 4501 .......... .......... ...--..... ........-- .......... .......... 4561 .......... .......... ........-. .......... ........-. ...-...... 4621 -.....-... .......... .......... .......... .......... .......... 4681 .......... .......... .......... .......... .......... .......... 4741 .......... .......... .......... .......... .......... .......... 4801 .......... .......... .......... .......... .......... .......... 4861 .......... .......... .......... .......... .......... .......... 4921 .......... .......... .......... .......... .......... .......... 4981 .......... .......... .......... .......... .......... .......... 5041 .......... .......... .......... .......... .......... .......... 5101 .......... .......... .......... .......... .......... .......... 5161 .......... .......... .......... .......... ........|| ||| // LOCUS (6)-ARCHIA 5213 bp RNA RNA 25-JAN-1994 DEFINITION ARCHIASCOMYCETES. ACCESSION No information KEYWORDS No information. SOURCE ARCHIASCOMYCETES. ORGANISM ARCHIASCOMYCETES. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: DIVIDER BASE COUNT 0 a 0 c 0 g 0 t 5213 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ----|..... .......... .......... 541 .......... .......... .......... .......... .......... .......... 601 .......... .......... .......... .......... .......... .......... 661 .......-.. .......... .......... ..-....... |......... ....-..... 721 .......-.. .....|.... ........-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- ------.... .......... 841 .......... .......... .......... .......... .......... .......... 901 .......... .......... .......... .......... .......... .......... 961 .....-..|. .......... .......... .|........ -......... .....-.... 1021 .......... ....---... ..-..---.. .......... .......... .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .......... .......... .......... .......... .......... 1201 .......... .......... .......... .......... .......... .......... 1261 .......... .......... .........- .......... ..----.... ........-- 1321 .......... .......... .......... .......... .......... .......... 1381 ......---. .......... .......-.. .......... .......... .......... 1441 .......... ........-. ..-....... .......... .......... ........-. 1501 ...|...-.. .......... .......... .......... .......... .....-...| 1561 .......... .......... .......... .......... .--....... .......... 1621 .......... .......... .......... .......... .......... .......... 1681 .......... .......... .......... .......... .......... .......... 1741 .......... .......... .......... .......... .......... .......... 1801 .......... .......... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .......... .......... 1921 .......... .......-.. .......... -.......-. .......... .......... 1981 .....-.... ...--..... .......... .......... -......... .......... 2041 .......... .....----. .......... .......... .....----- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- --------.. .......... .......... .......... 2221 .......... .......... .......... .......... ........|. .......-.. 2281 .......... -......... ......--.. .-........ .......... ---....... 2341 .......... ...-...... ....-..... .......... .......... .......... 2401 ....|..... .......... .......... .......... .......... .....-.... 2461 .....--... .......... .......... .......... .......... .......... 2521 .--....-.. |......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... .......... 2701 .-..-..... .......... .......... .......... .......... .......... 2761 ..|....... .......... ........|. ........-. |......... .......... 2821 .--------- ----...... .-........ .......... .......... .......... 2881 .....---.. ..-....... .......... .......... .......... .......... 2941 .......... .......... .......... .......... .......... .......... 3001 .......... .......... .......... .......... .......... .......... 3061 .......... .......... .......... .......... .--....... ...-.....- 3121 .......--. |......... .......-.. .......... .-........ .........- 3181 .......... .-........ .......... .......... .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .......... .......... .......... 3361 .......... .......... .......... .......... .....--... .......... 3421 .......... .......... .......... .......... .......... .......... 3481 .......... ........-- --........ .......... .......... .......... 3541 .......... .......... .......... .......... .......... .......... 3601 .......... .......... .......... .......... .......... .......... 3661 .......... .......... .......... .......... .......... .......... 3721 .......... .......... .......... .......... .....-.... .......... 3781 .......... .......... .......... ......|... ...------- -------... 3841 ...-..-... ..-....... .......... ..-....... ......-... ..--...... 3901 .......... .......... .......... .......... .......... .......... 3961 .......... .......... ...-...... .......... .......... .......... 4021 ......---. .......... .-........ .-........ .......... .......... 4081 .......... .......... ......-... .......... .........- .......... 4141 .-.-...... .......... .......... .......... .-........ .......... 4201 .......... .......... .......... .......... .......... .......... 4261 .......... .......... .......... .-........ ...-...... .......... 4321 .......... ......-... .........- .......... -......... .........- 4381 .....-.... .......... ........-- ....-..... .......... .......... 4441 .......... .......... .......... .......... .......... .......... 4501 .......... .......... ...--..... ........-- .......... .......... 4561 .......... .......... ........-. .......... ........-. ...-...... 4621 -.....-... .......... .......... .......... .......... .......... 4681 .......... .......... .......... .......... .......... .......... 4741 .......... .......... .......... .......... .......... .......... 4801 .......... .......... .......... .......... .......... .......... 4861 .......... .......... .......... .......... .......... .......... 4921 .......... .......... .......... .......... .......... .......... 4981 .......... .......... .......... .......... .......... .......... 5041 .......... .......... .......... .......... .......... .......... 5101 .......... .......... .......... .......... .......... .......... 5161 .......... .......... .......... .......... ........|| ||| // LOCUS mt.S.pombe 5213 bp RNA RNA ~?~???? DEFINITION Mitochondrion Schizosaccharomyces pombe. ACCESSION No information KEYWORDS No information. SOURCE Mitochondrion Schizosaccharomyces pombe. ORGANISM Mitochondrion Schizosaccharomyces pombe. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: X54421 Schizosaccharomyces pombe mt SSU rRNA (spo m ssu) Unpublished (from K. Wolf through B.F. Lang) BASE COUNT 485 a 203 c 280 g 454 t 3791 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ----|----- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- --------au aaaaauauau auaauGAGUU 661 (UGA-)U-GU U|AGCUC-GG UUAUAACGCU -A-UCUA-GA |GA-UU-UUA ACAC-A-UGC 721 -AAAUCG-AA CGaau|caa- caaaaac--- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- ---------- --aauacauc 841 cu(uuag)-- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ------ggga uguuuguguu uuuuugu-|g 961 a---C-GU|G GUGAACAGGU GAGUAA-a-A G|GGA-AGAA --CG---GAC CUUAA-AUUU 1021 CGGc------ -------(ua aa-u)----- ---------u CCGAAUA--- ---------- 1081 ---------- ---------- ---aacacac ucuuuuggag uguugugaaa gaagug(aaa 1141 a----)cuuu ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ------GAUU UAAGACUGG- --CUUCU-UA |--------- -CGAUUAA-- 1321 -AGUAGUUGG AG-AG(GUAA AAG------- ---------- ---------- ------)CUU 1381 AACAA|---- GCUCA----A A|UCGUA-AU CA|ugACACU (AAGU--)GG UGCUCUGAU| 1441 CACAUU-GGC UC(UGAGA-- CAA)CAGCCA A|GAUgaac( auuua)guuc AUC----C-A 1501 GCA|GUG-GA GAAUAUUAGU C-AAUGAUC( ---------- ----GAAA)G AUUGA-ACU| 1561 A|-GUCA-U- CU-AGA---- -AGAGUGAAA --CUuu-ua- (--------- guua------ 1621 --------)- uagcuccuua aauu|----- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 -----aagaa aauu------ ---------- --ugauucuu ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------a auuuuauguA AUUCU|-UGC 1921 -CAA-U--UU CCGU-G(-CC AGCAGCA-GC -GGU-UA)-U ACGGAU|--- -AGA-AUA-- 1981 AGCGU-UUAA CAU--AAUAA AAAGGC|CUA AAAAGUAUGU -A-GAUG|GA AAAAaa---- 2041 |--------- ---------- -------(-- ---caaa)-- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|u cUUUUUC-UA 2281 G-----AGUA -AU-AAag-a -UGUUU--GU -----|AGUA UUGUCA-AAU ---AAGGG(A 2341 UCAAA)UCC- GAC---AAUC UUGA-UGA-G ACU------- ----GCU-UA -AGU(-AAAA 2401 -)AC|U---- ----ACUUAC A--aUUaAU- UA---CUGAC AUU--GAGAU ACGAA-GGCU 2461 U-AGA---UC GCGAAAGAG( AUUAGAUAC) CUCU-GUAG| -UCUA-AGC- UGUAAA-CGA 2521 U--UAUU-GC |UC|UCCCAA UCU---(-uu u--------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---)----UG AUUGGGU-UU AGU(GAAG)A CGguAAGCAA 2701 U-A|--U|GC C-UGGG-GAG UACUUUC(-- -GCAA--)GA UUG--AAACC CAAAACAU-U 2761 AG|ACGGUC- UUGGAA---A UCCGCAGU|G AAUCAUGU-U |AUUUAA-UU AG(AUAAUCC 2821 G--------- ----)CUAAA A-AUCUUACC UUUCCUUAAA -acaauua-- ---------- 2881 (-------gu uu-)------ ---------- -------<-- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ->uaa-uu-g u--U---GGG UAU-UG|CA- 3121 |UG|-GC--U |G------UC UU-UA|G-UU AAU-|GUC(G --UAA)GAUg a--GG(UUA- 3181 AUU)CC-caU U-AAUUAACG AAA-GCCUUC -----AAAGA A--------- -----(---- 3241 --)--- ---|------ -UU-CUUUG- --UGUUA-GU (GAUA-A)GC UAA-CUUUU- 3781 -----UAG-A GGGUUA-AGA C-AAGUCAAU A|UGAU|CCU UAU------- ---------G 3841 G-A-AA-GGG CU-AUA--GA -CGUGAUAUA AA-AUCUAAU C--CAA-UAA U---Uuuuaa 3901 uauc<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--g aaa--)gauu -gaaguauua UUAU-AAUGG UUAGGAgauu 4021 ua-------- -----UUCAG --AUUUA-AA U-C(------ ---------- ---------- 4081 ---------- ---------- UGUAAu-uu) G-AU-U--UA -A--UGAAG- -GAGGAAUUG 4141 C-G--AGUAA U-CACUAA(- UCAUU-AC-- --)GUAGUGG U-GAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -AUU--U-AU 4261 CUCUGA-GA- UGUACUAA-C -UACUCGUCA A-GCG--CUG AAA-GUAu-- ---------- 4321 ---------- ---------- ---------- ---------- ---------< ---------- 4381 ---------- ---uaaucuc uugaagaaga ca(uucauu) ------- ---------- ---------- ---------- 4561 ---------- ----gUGCAA UUAG-UGU-U AAGUCGAAAU AAGGUAAC-C GUA-GU(GGA 4621 -A)GUU-GC- GGUUGAACUA ---------| AUUAAUUCAG GUUAACCCCC CCCC~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS (6)-EUASCO 5213 bp RNA RNA 25-JAN-1994 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: DIVIDER BASE COUNT 0 a 0 c 0 g 0 t 5213 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ----|..... .......... .......... 541 .......... .......... .......... .......... .......... .......... 601 .......... .......... .......... .......... .......... .......... 661 .......-.. .......... .......... ..-....... |......... ....-..... 721 .......-.. .....|.... ........-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- ------.... .......... 841 .......... .......... .......... .......... .......... .......... 901 .......... .......... .......... .......... .......... .......... 961 .....-..|. .......... .......... .|........ -......... .....-.... 1021 .......... ....---... ..-..---.. .......... .......... .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .......... .......... .......... .......... .......... 1201 .......... .......... .......... .......... .......... .......... 1261 .......... .......... .........- .......... ..----.... ........-- 1321 .......... .......... .......... .......... .......... .......... 1381 ......---. .......... .......-.. .......... .......... .......... 1441 .......... ........-. ..-....... .......... .......... ........-. 1501 ...|...-.. .......... .......... .......... .......... .....-...| 1561 .......... .......... .......... .......... .--....... .......... 1621 .......... .......... .......... .......... .......... .......... 1681 .......... .......... .......... .......... .......... .......... 1741 .......... .......... .......... .......... .......... .......... 1801 .......... .......... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .......... .......... 1921 .......... .......-.. .......... -.......-. .......... .......... 1981 .....-.... ...--..... .......... .......... -......... .......... 2041 .......... .....----. .......... .......... .....----- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- --------.. .......... .......... .......... 2221 .......... .......... .......... .......... ........|. .......-.. 2281 .......... -......... ......--.. .-........ .......... ---....... 2341 .......... ...-...... ....-..... .......... .......... .......... 2401 ....|..... .......... .......... .......... .......... .....-.... 2461 .....--... .......... .......... .......... .......... .......... 2521 .--....-.. |......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... .......... 2701 .-..-..... .......... .......... .......... .......... .......... 2761 ..|....... .......... ........|. ........-. |......... .......... 2821 .--------- ----...... .-........ .......... .......... .......... 2881 .....---.. ..-....... .......... .......... .......... .......... 2941 .......... .......... .......... .......... .......... .......... 3001 .......... .......... .......... .......... .......... .......... 3061 .......... .......... .......... .......... .--....... ...-.....- 3121 .......--. |......... .......-.. .......... .-........ .........- 3181 .......... .-........ .......... .......... .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .......... .......... .......... 3361 .......... .......... .......... .......... .....--... .......... 3421 .......... .......... .......... .......... .......... .......... 3481 .......... ........-- --........ .......... .......... .......... 3541 .......... .......... .......... .......... .......... .......... 3601 .......... .......... .......... .......... .......... .......... 3661 .......... .......... .......... .......... .......... .......... 3721 .......... .......... .......... .......... .....-.... .......... 3781 .......... .......... .......... ......|... ...------- -------... 3841 ...-..-... ..-....... .......... ..-....... ......-... ..--...... 3901 .......... .......... .......... .......... .......... .......... 3961 .......... .......... ...-...... .......... .......... .......... 4021 ......---. .......... .-........ .-........ .......... .......... 4081 .......... .......... ......-... .......... .........- .......... 4141 .-.-...... .......... .......... .......... .-........ .......... 4201 .......... .......... .......... .......... .......... .......... 4261 .......... .......... .......... .-........ ...-...... .......... 4321 .......... ......-... .........- .......... -......... .........- 4381 .....-.... .......... ........-- ....-..... .......... .......... 4441 .......... .......... .......... .......... .......... .......... 4501 .......... .......... ...--..... ........-- .......... .......... 4561 .......... .......... ........-. .......... ........-. ...-...... 4621 -.....-... .......... .......... .......... .......... .......... 4681 .......... .......... .......... .......... .......... .......... 4741 .......... .......... .......... .......... .......... .......... 4801 .......... .......... .......... .......... .......... .......... 4861 .......... .......... .......... .......... .......... .......... 4921 .......... .......... .......... .......... .......... .......... 4981 .......... .......... .......... .......... .......... .......... 5041 .......... .......... .......... .......... .......... .......... 5101 .......... .......... .......... .......... .......... .......... 5161 .......... .......... .......... .......... ........|| ||| // LOCUS (7)-PLECTO 5213 bp RNA RNA 25-JAN-1994 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: DIVIDER BASE COUNT 0 a 0 c 0 g 0 t 5213 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ----|..... .......... .......... 541 .......... .......... .......... .......... .......... .......... 601 .......... .......... .......... .......... .......... .......... 661 .......-.. .......... .......... ..-....... |......... ....-..... 721 .......-.. .....|.... ........-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- ------.... .......... 841 .......... .......... .......... .......... .......... .......... 901 .......... .......... .......... .......... .......... .......... 961 .....-..|. .......... .......... .|........ -......... .....-.... 1021 .......... ....---... ..-..---.. .......... .......... .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .......... .......... .......... .......... .......... 1201 .......... .......... .......... .......... .......... .......... 1261 .......... .......... .........- .......... ..----.... ........-- 1321 .......... .......... .......... .......... .......... .......... 1381 ......---. .......... .......-.. .......... .......... .......... 1441 .......... ........-. ..-....... .......... .......... ........-. 1501 ...|...-.. .......... .......... .......... .......... .....-...| 1561 .......... .......... .......... .......... .--....... .......... 1621 .......... .......... .......... .......... .......... .......... 1681 .......... .......... .......... .......... .......... .......... 1741 .......... .......... .......... .......... .......... .......... 1801 .......... .......... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .......... .......... 1921 .......... .......-.. .......... -.......-. .......... .......... 1981 .....-.... ...--..... .......... .......... -......... .......... 2041 .......... .....----. .......... .......... .....----- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- --------.. .......... .......... .......... 2221 .......... .......... .......... .......... ........|. .......-.. 2281 .......... -......... ......--.. .-........ .......... ---....... 2341 .......... ...-...... ....-..... .......... .......... .......... 2401 ....|..... .......... .......... .......... .......... .....-.... 2461 .....--... .......... .......... .......... .......... .......... 2521 .--....-.. |......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... .......... 2701 .-..-..... .......... .......... .......... .......... .......... 2761 ..|....... .......... ........|. ........-. |......... .......... 2821 .--------- ----...... .-........ .......... .......... .......... 2881 .....---.. ..-....... .......... .......... .......... .......... 2941 .......... .......... .......... .......... .......... .......... 3001 .......... .......... .......... .......... .......... .......... 3061 .......... .......... .......... .......... .--....... ...-.....- 3121 .......--. |......... .......-.. .......... .-........ .........- 3181 .......... .-........ .......... .......... .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .......... .......... .......... 3361 .......... .......... .......... .......... .....--... .......... 3421 .......... .......... .......... .......... .......... .......... 3481 .......... ........-- --........ .......... .......... .......... 3541 .......... .......... .......... .......... .......... .......... 3601 .......... .......... .......... .......... .......... .......... 3661 .......... .......... .......... .......... .......... .......... 3721 .......... .......... .......... .......... .....-.... .......... 3781 .......... .......... .......... ......|... ...------- -------... 3841 ...-..-... ..-....... .......... ..-....... ......-... ..--...... 3901 .......... .......... .......... .......... .......... .......... 3961 .......... .......... ...-...... .......... .......... .......... 4021 ......---. .......... .-........ .-........ .......... .......... 4081 .......... .......... ......-... .......... .........- .......... 4141 .-.-...... .......... .......... .......... .-........ .......... 4201 .......... .......... .......... .......... .......... .......... 4261 .......... .......... .......... .-........ ...-...... .......... 4321 .......... ......-... .........- .......... -......... .........- 4381 .....-.... .......... ........-- ....-..... .......... .......... 4441 .......... .......... .......... .......... .......... .......... 4501 .......... .......... ...--..... ........-- .......... .......... 4561 .......... .......... ........-. .......... ........-. ...-...... 4621 -.....-... .......... .......... .......... .......... .......... 4681 .......... .......... .......... .......... .......... .......... 4741 .......... .......... .......... .......... .......... .......... 4801 .......... .......... .......... .......... .......... .......... 4861 .......... .......... .......... .......... .......... .......... 4921 .......... .......... .......... .......... .......... .......... 4981 .......... .......... .......... .......... .......... .......... 5041 .......... .......... .......... .......... .......... .......... 5101 .......... .......... .......... .......... .......... .......... 5161 .......... .......... .......... .......... ........|| ||| // LOCUS mt.E.nid.1 5213 bp RNA RNA 29-JAN-1982 DEFINITION Mitochondrion (Emericella) Aspergillus nidulans. ACCESSION No information KEYWORDS No information. SOURCE Mitochondrion (Emericella) Aspergillus nidulans. ORGANISM Mitochondrion (Emericella) Aspergillus nidulans. REFERENCE 1 (bases 1 to 1701) AUTHORS No information JOURNAL 751(1981) STANDARD No information COMMENTS Organism information Culture collection: ? Sequence information (bases 1 to 5213) Corresponding GenBank entry: J01393 Phylo:Mitochondria,Fungi,Aspergillus DEFINITION a.nidulans mt small ribosomal subunit rna gene. SOURCE aspergillus nidulans mitochondria. ORGANISM Mitochondrion Emericella nidulans Eukaryota; Fungi; Eumycota; Ascomycotina; Plectomycetes; Eurotiales; Trichocomaceae. REFERENCE 1 (bases 1 to 1437) AUTHORS Kuntzel,H. and Kochel,H.G. TITLE evolution of rrna and origin of mitochondria JOURNAL Nature 293, 751-755 (1981) COMMENT this sequence is compared to the s-rrna gene sequences of yeast (s.cerev.), man, mouse, e.coli and maize. cf ystrg18sa, hummt, musmt, ecorgrrnb and mzecp16srr. NCBI gi: 336909 FEATURES Location/Qualifiers source 1..1437 /organism="Emericella nidulans" /mitochondrion ORIGIN putative 5' end of primary transcript BASE COUNT 500 a 209 c 299 g 429 t 3776 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ----|----- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- -------aaa auuuuGAGUU 661 (UGA-)U-GA U|GGCUC-UG AUUGAACGCU -G-UCCA-AG |UA-CU--UG ACAC-A-UGC 721 -UAAUCG-AA CGACU|AAUU AGUU------ ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- ---------- ---auua--- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- AACUAAGU|A 961 G--UA-GU|G GUGUACAGGU GAGUAA-aaG A|UAA-UUug --GC---UAC CUUAA-AGUA 1021 AGGGG----- -------(aa aa-a)----- --------UC CCUUAUA--- ---------- 1081 ---------- ---------- ---------- ---------- -----AAAAG AAAGGAaaaa 1141 gaagg-UCC- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ------GCUU UAAGAUGUU- --AAUUA-UU |a------uC ACGG--UG-- 1321 -AGUAGUAGU AA-AG(GUAA uga------- ---------- ---------- ------)CUU 1381 UACUA|---- GCUAA----A U|CCGUA-GU CG|--uGACU (GAGA--)GG UCGAUCGAC| 1441 CACAUU-GGG UC(UGAAA-- AA-)ACCCCA A|UGCgu--( uu-u-)--a- GUA----C-A 1501 GCA|GUG-AG GAAUAUUGGU C-AAUGGCC( ---------- ----GAAA)G GC-GA-ACC| 1561 A|-GUAA-C- UU-GGA---- -AGAAUGAAA --GUGU-AUU (--------a uaau------ 1621 --------)A AUACAAUAAC GAUU|----- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- -(-------- )auaucguau aaaauucuaa 1801 auagaauaau gauaaugaca auuuucuauu ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- -----UAUAA GUCUU|-GAC 1921 -CAAaC---U ACCU-G(-CC AGCAGUC-GC -GGU-AA)-U ACGUAG|--- -AAG-ACU-- 1981 AGUGU-UAAU CAU--CUUUA UUAGGU|UUA AAGGGUACCU -A-GACG|GU AAAUUA--AA 2041 |CUC------ ---------- -------(-- --uaaau)-- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ------GAGU ---------- ---------- 2221 ---------- ---------- ---------- ---------- ------AC|U UAUUUAC-UA 2281 G-----AGUU -UU-AUgu-a -AGAAG--GA -----|AGAA GCUCUG-GAG ---UAGUG(A 2341 UAUAA)UAC- GUA---UAUA CCAG-AGA-G ACU------- ----GGUAAC -GGC(-GAAG 2401 -)GC|A---- ----UCCUUC U-AUGUAAA- AA---CUGAC GUU--GAGGG ACGAA-GGCU 2461 U-GGG---UA GCAAGAAGG( AUUAGAUAC) CCUA-GUAG| -UCCA-AGC- AGACAA-UGA 2521 U--GAAU-GU |CA|UAGACU AGAaaa(agu cguuuagacu au-------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---)aaa-UU UAGUCUA-UA AAU(GAAA)G UG-UAAGCAU 2701 U-C|--C|AC C-UCAA-GAG UAAUAUG(-- -GCAA--)CA UAU--AAACU GAAAUCAU-U 2761 AG|ACCGUU- UCUGAG---A CCAGUAGU|G AAGUAUGU-U |AUUUAA-UU CG(AUGAUCC 2821 G--------- ----)CGAAA A-ACCUUACC ACAGUUUGAA Uau------- ---------- 2881 (--------u u--)------ ---------- -------<-- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ->-------u a--C---AAG CGC-UG|CA- 3121 |CG|-GC--U |G------UU UU-UA|G-UU AAU-|GUC(G --UGA)GAUC U--GG(UUA- 3181 AGU)CCU-U- U-AAUUAACG AAA-ACCCU- ----cacuuu auuug----- -----(cauu 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|-----u auaaaguuGA -UCGCCU-U- (UAUA-U)-- UGGuu-AGAU 3781 A----AUA-G GGAUUA-AGA C-AAGUCAUC A|UGGC|CUU AAU------- ---------A 3841 C-U-GU-GGG CU-AUA--GA -CGUGCCACA UA--UGCCUU U-ACAA-AGG GA--UGCGA- 3901 UUUU<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--G UG---)AAAu uGAGCUAAUC CCCC-AAAAA AGG-AUAUAA 4021 ---------- -----UAUGG --AUUGU-AG U-C(------ ---------- ---------- 4081 ---------- ---------- UGUAAc-uc) G-AC-U--AC -A--UGAAU- -AAGGAAUUA 4141 C-U--AGUAA U-CGUGAA(- UCACCAUC-- --)GUCACGG U-GAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -UUA--A-AA 4261 AUCAGC-UG- GGUACUAA-C -CACUCGUCA G-GCG--CUG AAA-GAAgua ugugcaa--- 4321 ---------- ---------- ---------- ---------- ---------< gaaguuugau 4381 uuacu-uaua uuuauaauau auauaa(uca g)uuauauau auuuauaagu uaaauuuucg 4441 ca-------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 -------ugc augacUUUGA UUGG-UGU-U AAGUCGAAAU AUGGUUCG-U GUA-AU(GGA 4621 -A)AUU-GC- ACGGGAUGAA -----UUA-| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS mt.P.alber 5213 bp RNA RNA 11-JAN-191 DEFINITION Mitochondrion Petromyces albertensis NRRL 20602. ACCESSION No information KEYWORDS No information. SOURCE Mitochondrion Petromyces albertensis NRRL 20602. ORGANISM Mitochondrion Petromyces albertensis NRRL 20602. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: U29229 LOCUS PAU29229 1372 bp DNA PLN 02-JAN-1996 DEFINITION Petromyces albertensis NRRL 20602 mitochondrial ribosomal RNA, small subunit, mitochondrial gene, partial sequence. ACCESSION U29229 NID g1144033 KEYWORDS . SOURCE Petromyces albertensis. ORGANISM Mitochondrion Petromyces albertensis Eukaryotae; mitochondrial eukaryotes; Eumycota; Ascomycotina; Plectomycetes; Eurotiales; Trichocomaceae; Petromyces. REFERENCE 1 (bases 1 to 1372) AUTHORS Peterson,S.W. TITLE Phylogenetic analysis of Aspergillus based upon rDNA sequence JOURNAL Unpublished REFERENCE 2 (bases 1 to 1372) AUTHORS Peterson,S.W. TITLE Direct Submission JOURNAL Submitted (15-JUN-1995) Stephen W. Peterson, National Center for Agricultural Utilization Research, Microbial Properties Research, 1815 N. University St., Peoria, IL 61604, USA COMMENT NCBI gi: 1144033 FEATURES Location/Qualifiers source 1..1372 /strain="NRRL 20602" /organism="Petromyces albertensis" /mitochondrion rRNA <1..>1372 /product="small subunit ribosomal RNA" BASE COUNT 476 a 209 c 283 g 404 t ORIGIN BASE COUNT 476 a 209 c 283 g 404 t 3841 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- -------~~~ ~~~~~~~~~~ 661 (~~~-)~-~~ ~|~~~~~-~G AUUGAACGCU -G-UCCA-AG |UA-CU--UG ACAC-A-UGC 721 -UAAUCG-AA CGACU|AAUU AGUUu----- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- ---------- ---uuaua-- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- AACUAAGU|A 961 G--UA-GU|G GUGUACAGGU GAGUAA-aaG A|UAA-UUug --GC---UAC CUUAA-AGUA 1021 AGGGG----- -------(aa aa--)----- --------UC CCUUauaa-- ---------- 1081 ---------- ---------- ---------- ---------- -----ac--g aaaggaaaau 1141 aaaag-ucc- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ------GCUU UAAGAUGUU- --AAUCU-UU |a------uc cCGG--GU-- 1321 -AGUAGUAGG AA-AA(GUAA UGA------- ---------- ---------- ------)UUU 1381 UUCUA|---- GCUAAaa--- -|CCGUA-GU CG|--AGACU (GAGA--)-G UCAAUCGAC| 1441 CACAUU-GGG UC(UGAAA-- AA-)ACCCCA A|UGCgu--( auua-)---- GUA----C-A 1501 GCA|GUG-AG GAAUAUUGGU C-AAUGGCC( ---------- ----GAAA)G GCUGA-ACC| 1561 A|-GUAA-C- UU-GGA---- -AGAAUGUAA --GUGU-AUU (--------a uuau------ 1621 --------)A AUACAAUAAC GAUU|----- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- -(-------- )aacucguau aaaauucuaa 1801 auaggauaau gauaaugaca auuuccuauu ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- -----UAUAA GUCUU|-GAC 1921 -CAAAU---U ACGU-G(-CC AGCAGUC-GC -GGU-AA)-U ACGUAG|--- -AAG-ACU-- 1981 AGUGU-UAGU CAU--CUUUA UUAGGU|UUA AAGGGUACCU -A-GACG|GU AAAUUA--AA 2041 |CUC------ ---------- -------(-- --uaaau)-- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ------GAGu ---------- ---------- 2221 ---------- ---------- ---------- ---------- ------AC|U UUUUUAC-UA 2281 G-----AGUU -Uu-AUgu-g -AGAAG--GA -----|AGAA UUUCUG-GAG ---UAGGG(a 2341 uaaaa)UAC- uuu---GAUA CCAG-AAG-G ACU------- ----GGUAAC -GGC(-GAAG 2401 -)GC|A---- ----UCCUUC U-AUGUAAA- AA---CUGAC GUU--GAGGG ACGAA-GGCU 2461 U-GGG---UA GCAAUAAGG( AUUAGAUAC) CCUA-GUAG| -UCCA-AGC- AGAAAA-UGA 2521 U--GAAU-GU |CA|UAGGCU AGAuuu(uaa a-u------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---)-----U UAGUCUA-UA AAU(GAAA)G UG-UAAGCAU 2701 U-C|--C|AC C-UCAA-GAG UAAUAUG(-- -GCAA--)CA UAU--AAACU GAAAUCAU-U 2761 AG|ACCGUU- UCUGAA---A CCAGUAGU|G AAGUAUGU-U |AUUUAA-UU CG(AUAACCC 2821 G--------- ----)CGAAA A-ACCUUACC ACAGUuugaa uaacaaugaa a--------- 2881 ---------u ug--u----- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------u a--c---AAG CGC-UG|CA- 3121 |CG|-GC--U |G------UC UU-UA|G-UU AAU-|GUC(G --UGA)GAUU U--GG(UUA- 3181 ACU)CCUC-- U-AAUUAACG AAA-ACCCU- ----cacuuu auuug----- -----(uaua 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|-----u auaaagugGU -UCGCCA-C- (UACA-U)-- UGGaccAGAU 3781 A----AUA-G GGAUUA-AGA C-AAGUCAUC A|UGGC|CUA AAU------- ---------A 3841 C-U-GU-GGG CU-AUA--GA -CGUGCCACA UA--CGCCuu a-ACAA-AGG GA--UGCGA- 3901 UAUU<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--G UGA--)AAUG -GAGCUAAUC CCCA--aaau uGG-AUAUAA 4021 ---------- -----UAUGG --AUUGU-AG U-C(------ ---------- ---------- 4081 ---------- ---------- UGUAAc-uc) G-AC-U--AC -A--UGAAU- -AAGGAAUUA 4141 C-U--AGUAA U-CGUGAA(- UCACCAUC-- --)GUCACGG U-GAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -UUU--A-AU 4261 CUCAGC-UA- GGUACUAA-C -CACUCGUCA G-GCG--CUG AAA-GGAgua ugugcaa--- 4321 ---------- ---------- ---------- ---------- ---------< -uaaguuuga 4381 uuugc-uuau guauuaauau auauaa(uca g)guauauaa auauguaagu auuauuuucg 4441 ua-------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 -------ugc augacUUUGA UUGG-UGU-U AAGUCGAAAU AU~~~~~~-~ ~~~-~~(~~~ 4621 -~)~~~-~~- ~~~~~~~~~~ -----~~~-| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS mt.P.all.1 5213 bp RNA RNA 11-JAN-191 DEFINITION Mitochondrion Petromyces alliaceus NRRL 315. ACCESSION No information KEYWORDS No information. SOURCE Mitochondrion Petromyces alliaceus NRRL 315. ORGANISM Mitochondrion Petromyces alliaceus NRRL 315. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: U29231 LOCUS PAU29231 1372 bp DNA PLN 02-JAN-1996 DEFINITION Petromyces alliaceus NRRL 315 mitochondrial ribosomal RNA, small subunit, mitochondrial gene, partial sequence. ACCESSION U29231 NID g1144035 KEYWORDS . SOURCE Petromyces alliaceus. ORGANISM Mitochondrion Petromyces alliaceus Eukaryotae; mitochondrial eukaryotes; Eumycota; Ascomycotina; Plectomycetes; Eurotiales; Trichocomaceae; Petromyces. REFERENCE 1 (bases 1 to 1372) AUTHORS Peterson,S.W. TITLE Phylogenetic analysis of Aspergillus based upon rDNA sequence JOURNAL Unpublished REFERENCE 2 (bases 1 to 1372) AUTHORS Peterson,S.W. TITLE Direct Submission JOURNAL Submitted (15-JUN-1995) Stephen W. Peterson, National Center for Agricultural Utilization Research, Microbial Properties Research, 1815 N. University St., Peoria, IL 61604, USA COMMENT NCBI gi: 1144035 FEATURES Location/Qualifiers source 1..1372 /strain="NRRL 315" /organism="Petromyces alliaceus" /mitochondrion rRNA <1..>1372 /product="small subunit ribosomal RNA" BASE COUNT 476 a 209 c 283 g 404 t ORIGIN BASE COUNT 476 a 209 c 283 g 404 t 3841 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- -------~~~ ~~~~~~~~~~ 661 (~~~-)~-~~ ~|~~~~~-~G AUUGAACGCU -G-UCCA-AG |UA-CU--UG ACAC-A-UGC 721 -UAAUCG-AA CGACU|AAUU AGUUu----- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- ---------- ---uuaua-- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- AACUAAGU|A 961 G--UA-GU|G GUGUACAGGU GAGUAA-aaG A|UAA-UUug --GC---UAC CUUAA-AGUA 1021 AGGGG----- -------(aa aa--)----- --------UC CCUUauaa-- ---------- 1081 ---------- ---------- ---------- ---------- -----ac--g aaaggaaaau 1141 aaaag-ucc- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ------GCUU UAAGAUGUU- --AAUCU-UU |a------uc cCGG--GU-- 1321 -AGUAGUAGG AA-AA(GUAA UGA------- ---------- ---------- ------)UUU 1381 UUCUA|---- GCUAAaa--- -|CCGUA-GU CG|--AGACU (GAGA--)-G UCAAUCGAC| 1441 CACAUU-GGG UC(UGAAA-- AA-)ACCCCA A|UGCgu--( auua-)---- GUA----C-A 1501 GCA|GUG-AG GAAUAUUGGU C-AAUGGCC( ---------- ----GAAA)G GCUGA-ACC| 1561 A|-GUAA-C- UU-GGA---- -AGAAUGUAA --GUGU-AUU (--------a uuau------ 1621 --------)A AUACAAUAAC GAUU|----- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- -(-------- )aacucguau aaaauucuaa 1801 auaggauaau gauaaugaca auuuccuauu ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- -----UAUAA GUCUU|-GAC 1921 -CAAAU---U ACGU-G(-CC AGCAGUC-GC -GGU-AA)-U ACGUAG|--- -AAG-ACU-- 1981 AGUGU-UAGU CAU--CUUUA UUAGGU|UUA AAGGGUACCU -A-GACG|GU AAAUUA--AA 2041 |CUC------ ---------- -------(-- --uaaau)-- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ------GAGu ---------- ---------- 2221 ---------- ---------- ---------- ---------- ------AC|U UUUUUAC-UA 2281 G-----AGUU -Uu-AUgu-g -AGAAG--GA -----|AGAA UUUCUG-GAG ---UAGGG(a 2341 uaaaa)UAC- uuu---GAUA CCAG-AAG-G ACU------- ----GGUAAC -GGC(-GAAG 2401 -)GC|A---- ----UCCUUC U-AUGUAAA- AA---CUGAC GUU--GAGGG ACGAA-GGCU 2461 U-GGG---UA GCAAUAAGG( AUUAGAUAC) CCUA-GUAG| -UCCA-AGC- AGAAAA-UGA 2521 U--GAAU-GU |CA|UAGGCU AGAuuu(uaa a-u------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---)-----U UAGUCUA-UA AAU(GAAA)G UG-UAAGCAU 2701 U-C|--C|AC C-UCAA-GAG UAAUAUG(-- -GCAA--)CA UAU--AAACU GAAAUCAU-U 2761 AG|ACCGUU- UCUGAA---A CCAGUAGU|G AAGUAUGU-U |AUUUAA-UU CG(AUAACCC 2821 G--------- ----)CGAAA A-ACCUUACC ACAGUuugaa uaacaaugaa a--------- 2881 ---------u ug--u----- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------u a--c---AAG CGC-UG|CA- 3121 |CG|-GC--U |G------UC UU-UA|G-UU AAU-|GUC(G --UGA)GAUU U--GG(UUA- 3181 ACU)CCUC-- U-AAUUAACG AAA-ACCCU- ----cacuuu auuug----- -----(uaua 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|-----u auaaagugGU -UCGCCA-C- (UACA-U)-- UGGaccAGAU 3781 A----AUA-G GGAUUA-AGA C-AAGUCAUC A|UGGC|CUA AAU------- ---------A 3841 C-U-GU-GGG CU-AUA--GA -CGUGCCACA UA--CGCCuu a-ACAA-AGG GA--UGCGA- 3901 UAUU<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--G UGA--)AAUG -GAGCUAAUC CCCA--aaau uGG-AUAUAA 4021 ---------- -----UAUGG --AUUGU-AG U-C(------ ---------- ---------- 4081 ---------- ---------- UGUAAc-uc) G-AC-U--AC -A--UGAAU- -AAGGAAUUA 4141 C-U--AGUAA U-CGUGAA(- UCACCAUC-- --)GUCACGG U-GAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -UUU--A-AU 4261 CUCAGC-UA- GGUACUAA-C -CACUCGUCA G-GCG--CUG AAA-GGAgua ugugcaa--- 4321 ---------- ---------- ---------- ---------- ---------< -uaaguuuga 4381 uuugc-uuau guauuaauau auauaa(uca g)guauauaa auauguaagu auuauuuucg 4441 ua-------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 -------ugc augacUUUGA UUGG-UGU-U AAGUCGAAAU AU~~~~~~-~ ~~~-~~(~~~ 4621 -~)~~~-~~- ~~~~~~~~~~ -----~~~-| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS mt.P.all.2 5213 bp RNA RNA 11-JAN-191 DEFINITION Mitochondrion Petromyces alliaceus NRRL 5108. ACCESSION No information KEYWORDS No information. SOURCE Mitochondrion Petromyces alliaceus NRRL 5108. ORGANISM Mitochondrion Petromyces alliaceus NRRL 5108. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: U29230 LOCUS PAU29230 1372 bp DNA PLN 02-JAN-1996 DEFINITION Petromyces alliaceus NRRL 5108 mitochondrial ribosomal RNA, small subunit, mitochondrial gene, partial sequence. ACCESSION U29230 NID g1144034 KEYWORDS . SOURCE Petromyces alliaceus. ORGANISM Mitochondrion Petromyces alliaceus Eukaryotae; mitochondrial eukaryotes; Eumycota; Ascomycotina; Plectomycetes; Eurotiales; Trichocomaceae; Petromyces. REFERENCE 1 (bases 1 to 1372) AUTHORS Peterson,S.W. TITLE Phylogenetic analysis of Aspergillus based upon rDNA sequence JOURNAL Unpublished REFERENCE 2 (bases 1 to 1372) AUTHORS Peterson,S.W. TITLE Direct Submission JOURNAL Submitted (15-JUN-1995) Stephen W. Peterson, National Center for Agricultural Utilization Research, Microbial Properties Research, 1815 N. University St., Peoria, IL 61604, USA COMMENT NCBI gi: 1144034 FEATURES Location/Qualifiers source 1..1372 /strain="NRRL 5108" /organism="Petromyces alliaceus" /mitochondrion rRNA <1..>1372 /product="small subunit ribosomal RNA" BASE COUNT 476 a 208 c 283 g 405 t ORIGIN BASE COUNT 476 a 208 c 283 g 405 t 3841 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- -------~~~ ~~~~~~~~~~ 661 (~~~-)~-~~ ~|~~~~~-~G AUUGAACGCU -G-UCCA-AG |UA-CU--UG ACAC-A-UGC 721 -UAAUCG-AA CGACU|AAUU AGUUu----- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- ---------- ---uuaua-- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- AACUAAGU|A 961 G--UA-GU|G GUGUACAGGU GAGUAA-aaG A|UAA-UUug --GC---UAC CUUAA-AGUA 1021 AGGGG----- -------(aa aa--)----- --------UC CCUUauaa-- ---------- 1081 ---------- ---------- ---------- ---------- -----ac--g aaaggaaaau 1141 aaaag-ucc- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ------GCUU UAAGAUGUU- --AAUCU-UU |a------uc uCGG--GU-- 1321 -AGUAGUAGG AA-AA(GUAA UGA------- ---------- ---------- ------)UUU 1381 UUCUA|---- GCUAAaa--- -|CCGUA-GU CG|--AGACU (GAGA--)-G UCAAUCGAC| 1441 CACAUU-GGG UC(UGAAA-- AA-)ACCCCA A|UGCgu--( auua-)---- GUA----C-A 1501 GCA|GUG-AG GAAUAUUGGU C-AAUGGCC( ---------- ----GAAA)G GCUGA-ACC| 1561 A|-GUAA-C- UU-GGA---- -AGAAUGUAA --GUGU-AUU (--------a uuau------ 1621 --------)A AUACAAUAAC GAUU|----- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- -(-------- )aacucguau aaaauucuaa 1801 auaggauaau gauaaugaca auuuccuauu ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- -----UAUAA GUCUU|-GAC 1921 -CAAAU---U ACGU-G(-CC AGCAGUC-GC -GGU-AA)-U ACGUAG|--- -AAG-ACU-- 1981 AGUGU-UAGU CAU--CUUUA UUAGGU|UUA AAGGGUACCU -A-GACG|GU AAAUUA--AA 2041 |CUC------ ---------- -------(-- --uaaau)-- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ------GAGu ---------- ---------- 2221 ---------- ---------- ---------- ---------- ------AC|U UUUUUAC-UA 2281 G-----AGUU -Uu-AUgu-g -AGAAG--GA -----|AGAA UUUCUG-GAG ---UAGGG(a 2341 uaaaa)UAC- uuu---GAUA CCAG-AAG-G ACU------- ----GGUAAC -GGC(-GAAG 2401 -)GC|A---- ----UCCUUC U-AUGUAAA- AA---CUGAC GUU--GAGGG ACGAA-GGCU 2461 U-GGG---UA GCAAUAAGG( AUUAGAUAC) CCUA-GUAG| -UCCA-AGC- AGAAAA-UGA 2521 U--GAAU-GU |CA|UAGGCU AGAuuu(uaa a-u------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---)-----U UAGUCUA-UA AAU(GAAA)G UG-UAAGCAU 2701 U-C|--C|AC C-UCAA-GAG UAAUAUG(-- -GCAA--)CA UAU--AAACU GAAAUCAU-U 2761 AG|ACCGUU- UCUGAA---A CCAGUAGU|G AAGUAUGU-U |AUUUAA-UU CG(AUAACCC 2821 G--------- ----)CGAAA A-ACCUUACC ACAGUuugaa uaacaaugaa a--------- 2881 ---------u ug--u----- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------u a--c---AAG CGC-UG|CA- 3121 |CG|-GC--U |G------UC UU-UA|G-UU AAU-|GUC(G --UGA)GAUU U--GG(UUA- 3181 ACU)CCUC-- U-AAUUAACG AAA-ACCCU- ----cacuuu auuug----- -----(uaua 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|-----u auaaagugGU -UCGCCA-C- (UACA-U)-- UGGaccAGAU 3781 A----AUA-G GGAUUA-AGA C-AAGUCAUC A|UGGC|CUA AAU------- ---------A 3841 C-U-GU-GGG CU-AUA--GA -CGUGCCACA UA--CGCCuu a-ACAA-AGG GA--UGCGA- 3901 UAUU<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--G UGA--)AAUG -GAGCUAAUC CCCA--aaau uGG-AUAUAA 4021 ---------- -----UAUGG --AUUGU-AG U-C(------ ---------- ---------- 4081 ---------- ---------- UGUAAc-uc) G-AC-U--AC -A--UGAAU- -AAGGAAUUA 4141 C-U--AGUAA U-CGUGAA(- UCACCAUC-- --)GUCACGG U-GAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -UUU--A-AU 4261 CUCAGC-UA- GGUACUAA-C -CACUCGUCA G-GCG--CUG AAA-GGAgua ugugcaa--- 4321 ---------- ---------- ---------- ---------- ---------< -uaaguuuga 4381 uuugc-uuau guauuaauau auauaa(uca g)guauauaa auauguaagu auuauuuucg 4441 ua-------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 -------ugc augacUUUGA UUGG-UGU-U AAGUCGAAAU AU~~~~~~-~ ~~~-~~(~~~ 4621 -~)~~~-~~- ~~~~~~~~~~ -----~~~-| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS mt.A.clava 5213 bp RNA RNA 11-JAN-191 DEFINITION Mitochondrion Aspergillus clavatoflavus. ACCESSION No information KEYWORDS No information. SOURCE Mitochondrion Aspergillus clavatoflavus. ORGANISM Mitochondrion Aspergillus clavatoflavus. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: U29232 LOCUS ACU29232 1375 bp DNA PLN 02-JAN-1996 DEFINITION Aspergillus clavatoflavus NRRL 5113 mitochondrial ribosomal RNA, small subunit, mitochondrial gene, partial sequence. ACCESSION U29232 NID g1144036 KEYWORDS . SOURCE Aspergillus clavatoflavus. ORGANISM Mitochondrion Aspergillus clavatoflavus Eukaryotae; mitochondrial eukaryotes; Eumycota; Ascomycotina; Plectomycetes; Eurotiales; Trichocomaceae; mitosporic Trichocomaceae; Aspergillus. REFERENCE 1 (bases 1 to 1375) AUTHORS Peterson,S.W. TITLE Phylogenetic analysis of Aspergillus based upon rDNA sequence JOURNAL Unpublished REFERENCE 2 (bases 1 to 1375) AUTHORS Peterson,S.W. TITLE Direct Submission JOURNAL Submitted (15-JUN-1995) Stephen W. Peterson, National Center for Agricultural Utilization Research, Microbial Properties Research, 1815 N. University St., Peoria, IL 61604, USA COMMENT NCBI gi: 1144036 FEATURES Location/Qualifiers source 1..1375 /strain="NRRL 5113" /organism="Aspergillus clavatoflavus" /mitochondrion rRNA <1..>1375 /product="small subunit ribosomal RNA" BASE COUNT 471 a 212 c 286 g 406 t ORIGIN BASE COUNT 471 a 212 c 286 g 406 t 3838 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- -------~~~ ~~~~~~~~~~ 661 (~~~-)~-~~ ~|~~~~~-~G AUUGAACGCU -G-UCCA-AG |UA-CU--UG ACAC-A-UGC 721 -UAAUCG-AA CGACU|AUUU AGUUuuu--- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- ---------- ---uuacug- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- -----AGU|A 961 G--UA-GU|G GUGUACAGGU GAGUAA-aaG A|UAA-UUug --GC---UAC CUUAA-AGUA 1021 AGGGG----- -------(aa aa--)----- --------UC CCUUauaa-- ---------- 1081 ---------- ---------- ---------- ---------- -----aaa-- aaaggaaauu 1141 aaaaagucc- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ------GCUU UAAGAUGUU- --AUUCU-UU |a------uc uCGG--UG-- 1321 -AGUAGUAGG AA-AG(GUAA UGA------- ---------- ---------- ------)CUU 1381 UUCUA|---- GCUAAuag-- -|CCGUA-GU CG|--UGACU (GAGA--)GG UCGAUCGAC| 1441 CACAUU-GGG UC(UGAAA-- AA-)ACCCCA A|UGCgu--( auua-)---- GUA----C-A 1501 GCA|GUG-AG GAAUAUUGGU C-AAUGGCC( ---------- ----GAAA)G GCUGA-ACC| 1561 A|-GUAA-C- UU-GGA---- -AGAAUGGAA --AUGU-AUU (--------a uaauauu--- 1621 --------)A AUACAAUAAC GAUU|----- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- -(-------- )aauucguau aaaauucuaa 1801 auaggauaau gauaaugaca auuuccuauu ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- -----UAUAA GUCUU|-GAC 1921 -CAAAU---U ACGU-G(-CC AGCAGUC-GC -GGU-AA)-U ACGUAG|--- -AAG-ACU-- 1981 AGUGU-UAGU CAU--CUUUA UUAGGU|UUA AAGGGUACCU -A-GACG|GU AAAUUA--AA 2041 |CUC------ ---------- -------(-- --uaaau)-- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ------GAGu ---------- ---------- 2221 ---------- ---------- ---------- ---------- ------AC|U UUUUUAC-UA 2281 G-----AGUU -Uu-AUaa-g -AGAAG--GU -----|AGAA UUUCUG-GAG ---UAGAG(a 2341 uagaa)UAC- uuu---GAUA CCAG-AAG-G ACU------- ----GAUAAC -GGC(-GAAG 2401 -)GC|A---- ----ACCUUC U-AUGUAAA- AA---CUGAC GUU--GAGGG ACGAA-GGCU 2461 U-GGG---UA GCAAUAAGG( AUUAGAUAC) CCUA-GUAG| -UCCA-AGC- AGAAAA-UGA 2521 U--GAAU-GU |CA|UGGGCU AGAaau(aua --u------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---)-----U UAGCCUA-UA AAU(GAAA)G UG-UAAGCAU 2701 U-C|--C|AC C-UCAA-GAG UAAUAUG(-- -GCAA--)CA UAU--AAACU GAAAUCAU-U 2761 AG|ACCGUU- UCUGAA---A CCAGUAGU|G AAGUAUGU-U |AUUUAA-UU CG(AUAACCC 2821 G--------- ----)CGAAA A-ACCUUACC ACAGUuugaa uaacaauaaa u--------- 2881 ---------u ug--u----- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------u a--c---AAG CGC-UG|CA- 3121 |CG|-GC--U |G------UC UU-UA|G-UU AAU-|GUC(G --UGA)GAUU U--GG(UUA- 3181 ACU)CCUU-- U-AAUUAACG AAA-ACCCU- ----cacuuu auuug----- -----(uaua 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|-----c auaaagugGU -UCGCCA-C- (UACA-U)-- UGGaccAGAU 3781 A----AUA-G GGAUUA-AGA C-AAGUCAUC A|UGGC|CUA AAU------- ---------A 3841 C-U-GU-GGG CU-AUA--GA -CGUGCCACA UA--CGCCuu a-ACAA-AGG GA--UGCGA- 3901 UAUU<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--G UGA--)AAUG -GAGCUAAUC CCCA--aaau aGG-AUAUAA 4021 ---------- -----UAUGG --AUUGU-AG U-C(------ ---------- ---------- 4081 ---------- ---------- UGUAAu-uc) G-AC-U--AC -A--UGAAU- -AAGGAAUUA 4141 C-U--AGUAA U-CGUGAA(- UCACCAUC-- --)GUCACGG U-GAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -UCU--A-AU 4261 CUCAGC-UA- GGUACUAA-C -CACUCGUCA G-GCG--CUG AAA-GGAgua ugugcaa--- 4321 ---------- ---------- ---------- ---------- ---------< -uaaguuuga 4381 uuuuc-cuau guguuaauau auacaa(uca g)guauuuaa auacguaggu uuuauuuucg 4441 ua-------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 -------ugc augacUUUGA UUGG-UGU-U AAGUCGAAAU AC~~~~~~-~ ~~~-~~(~~~ 4621 -~)~~~-~~- ~~~~~~~~~~ -----~~~-| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS mt.A.fla.1 5213 bp RNA RNA 11-JAN-191 DEFINITION Mitochondrion Aspergillus flavus. ACCESSION No information KEYWORDS No information. SOURCE Mitochondrion Aspergillus flavus. ORGANISM Mitochondrion Aspergillus flavus. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: U29214 LOCUS AFU29214 1374 bp DNA PLN 02-JAN-1996 DEFINITION Aspergillus flavus NRRL 1957 mitochondrial ribosomal RNA, small subunit, mitochondrial gene, partial sequence. ACCESSION U29214 NID g1144018 KEYWORDS . SOURCE Aspergillus flavus. ORGANISM Mitochondrion Aspergillus flavus Eukaryotae; mitochondrial eukaryotes; Eumycota; Ascomycotina; Plectomycetes; Eurotiales; Trichocomaceae; mitosporic Trichocomaceae; Aspergillus. REFERENCE 1 (bases 1 to 1374) AUTHORS Peterson,S.W. TITLE Phylogenetic analysis of Aspergillus based upon rDNA sequence JOURNAL Unpublished REFERENCE 2 (bases 1 to 1374) AUTHORS Peterson,S.W. TITLE Direct Submission JOURNAL Submitted (15-JUN-1995) Stephen W. Peterson, National Center for Agricultural Utilization Research, Microbial Properties Research, 1815 N. University St., Peoria, IL 61604, USA COMMENT NCBI gi: 1144018 FEATURES Location/Qualifiers source 1..1374 /strain="NRRL 1957" /organism="Aspergillus flavus" /mitochondrion rRNA <1..>1374 /product="small subunit ribosomal RNA" BASE COUNT 475 a 210 c 288 g 401 t ORIGIN BASE COUNT 475 a 210 c 288 g 401 t 3839 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- -------~~~ ~~~~~~~~~~ 661 (~~~-)~-~~ ~|~~~~~-~G AUUGAACGCU -G-UCCA-AG |UA-CU--UG ACAC-A-UGC 721 -UAAUCG-AA CGACU|AAUU AGUU------ ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- ---------- ---uuaaua- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- AACUAAGU|A 961 G--UA-GU|G GUGUACAGGU GAGUAA-aaG A|UAA-UUug --GC---UAC CUUAA-AGUA 1021 AGGGG----- -------(aa aa--)----- --------UC CCUUauaa-- ---------- 1081 ---------- ---------- ---------- ---------- -----ac--g aaaggaaaau 1141 aaaag-ucc- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ------GCUU UAAGAUGUU- --AAUCU-UU |a------uc uCGG--GG-- 1321 -AGUAGUAGG AA-AG(GUAA UGA------- ---------- ---------- ------)CUU 1381 UUCUA|---- GCUAAa---A U|CCGUA-GU CG|--UGACU (GAGA--)GG UCGAUCGAC| 1441 CACAUU-GGG UC(UGAAA-- AA-)ACCCCA A|UGCgu--( auua-)---- GUA----C-A 1501 GCA|GUG-AG GAAUAUUGGU C-AAUGGCC( ---------- ----GAAA)G GCUGA-ACC| 1561 A|-GUAA-C- UU-GGA---- -AGAAUGUAA --GUGU-AUU (--------a u--ugu---- 1621 --------)A AUACAAUAAC GAUU|----- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- -(-------- )aacucguau aaaauucuaa 1801 auaggauaau gauaaugaca auuuccuauu ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- -----UAUAA GUCUU|-GAC 1921 -CAAAU---U ACGU-G(-CC AGCAGUC-GC -GGU-AA)-U ACGUAG|--- -AAG-ACU-- 1981 AGUGU-UAGU CAU--CUUUA UUAGGU|UUA AAGGGUACCU -A-GACG|GU AAAUUA--AA 2041 |CUC------ ---------- -------(-- --uaaau)-- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ------GAGu ---------- ---------- 2221 ---------- ---------- ---------- ---------- ------AC|U UUUUUAC-UA 2281 G-----AGUU -Uu-AUgu-g -AGAAG--GA -----|AGAA UUUCUG-GAG ---UAGGG(a 2341 ugaaa)UAC- uuu---GAUA CCAG-AAG-G ACU------- ----GGUAAC -GGC(-GAAG 2401 -)GC|A---- ----UCCUUC U-AUGUAAA- AA---CUGAC GUU--GAGGG ACGAA-GGCU 2461 U-GGG---UA GCAAUAAGG( AUUAGAUAC) CCUA-GUAG| -UCCA-AGC- AGAAAA-UGA 2521 U--GAAU-GU |CA|UAGGCU AGAuuu(aaa a-u------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---)-----U UAGUCUA-UA AAU(GAAA)G UG-UAAGCAU 2701 U-C|--C|AC C-UCAA-GAG UAAUAUG(-- -GCAA--)CA UAU--AAACU GAAAUCAU-U 2761 AG|ACCGUU- UCUGAA---A CCAGUAGU|G AAGUAUGU-U |AUUUAA-UU CG(AUAACCC 2821 G--------- ----)CGAAA A-ACCUUACC ACAGUuugaa uaacaauaaa a--------- 2881 ---------u ug--u----- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------u a--c---AAG CGC-UG|CA- 3121 |CG|-GC--U |G------UC UU-UA|G-UU AAU-|GUC(G --UGA)GAUU U--GG(UUA- 3181 ACU)CCUC-- U-AAUUAACG AAA-ACCCU- ----cacuuu auuug----- -----(aaua 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|-----c auaaagugGU -UCGCCA-C- (UACA-U)-- UGGaccAGAU 3781 A----AUA-G GGAUUA-AGA C-AAGUCAUC A|UGGC|CUA AAU------- ---------A 3841 C-U-GU-GGG CU-AUA--GA -CGUGCCACA UA--CGCCuu a-ACAA-AGG GA--UGCGA- 3901 UAUU<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--G UGA--)AAUG -GAGCUAAUC CCCA--aaau uGG-AUAUAA 4021 ---------- -----UAUGG --AUUGU-AG U-C(------ ---------- ---------- 4081 ---------- ---------- UGUAAc-uc) G-AC-U--AC -A--UGAAU- -AAGGAAUUA 4141 C-U--AGUAA U-CGUGAA(- UCACCAUC-- --)GUCACGG U-GAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -UUU--A-AU 4261 CUCAGC-UA- GGUACUAA-C -CACUCGUCA G-GCG--CUG AAA-GGAgua ugugcaa--- 4321 ---------- ---------- ---------- ---------- ---------< -uaaguuuga 4381 uuugc-uuau guauuaauau auauaa(uca g)guauauaa auauguaagu auuauuuucg 4441 ua-------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 -------ugc augacUUUGA UUGG-UGU-U AAGUCGAAAU AU~~~~~~-~ ~~~-~~(~~~ 4621 -~)~~~-~~- ~~~~~~~~~~ -----~~~-| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS mt.A.fla.2 5213 bp RNA RNA 11-JAN-191 DEFINITION Mitochondrion Aspergillus flavus var. columnaris. ACCESSION No information KEYWORDS No information. SOURCE Mitochondrion Aspergillus flavus var. columnaris. ORGANISM Mitochondrion Aspergillus flavus var. columnaris. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: U29220 LOCUS AFU29220 1374 bp DNA PLN 02-JAN-1996 DEFINITION Aspergillus flavus var. columnaris NRRL 4822 mitochondrial ribosomal RNA, small subunit, mitochondrial gene, partial sequence. ACCESSION U29220 NID g1144024 KEYWORDS . SOURCE Aspergillus flavus var. columnaris. ORGANISM Mitochondrion Aspergillus flavus var. columnaris Eukaryotae; mitochondrial eukaryotes; Eumycota; Ascomycotina; Plectomycetes; Eurotiales; Trichocomaceae; mitosporic Trichocomaceae; Aspergillus. REFERENCE 1 (bases 1 to 1374) AUTHORS Peterson,S.W. TITLE Phylogenetic analysis of Aspergillus based upon rDNA sequence JOURNAL Unpublished REFERENCE 2 (bases 1 to 1374) AUTHORS Peterson,S.W. TITLE Direct Submission JOURNAL Submitted (15-JUN-1995) Stephen W. Peterson, National Center for Agricultural Utilization Research, Microbial Properties Research, 1815 N. University St., Peoria, IL 61604, USA COMMENT NCBI gi: 1144024 FEATURES Location/Qualifiers source 1..1374 /strain="NRRL 4822" /organism="Aspergillus flavus var. columnaris" /mitochondrion rRNA <1..>1374 /product="small subunit ribosomal RNA" BASE COUNT 475 a 210 c 288 g 401 t ORIGIN BASE COUNT 475 a 210 c 288 g 401 t 3839 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- -------~~~ ~~~~~~~~~~ 661 (~~~-)~-~~ ~|~~~~~-~G AUUGAACGCU -G-UCCA-AG |UA-CU--UG ACAC-A-UGC 721 -UAAUCG-AA CGACU|AAUU AGUU------ ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- ---------- ---uuaaua- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- AACUAAGU|A 961 G--UA-GU|G GUGUACAGGU GAGUAA-aaG A|UAA-UUug --GC---UAC CUUAA-AGUA 1021 AGGGG----- -------(aa aa--)----- --------UC CCUUauaa-- ---------- 1081 ---------- ---------- ---------- ---------- -----ac--g aaaggaaaau 1141 aaaag-ucc- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ------GCUU UAAGAUGUU- --AAUCU-UU |a------uc uCGG--GG-- 1321 -AGUAGUAGG AA-AG(GUAA UGA------- ---------- ---------- ------)CUU 1381 UUCUA|---- GCUAAa---A U|CCGUA-GU CG|--UGACU (GAGA--)GG UCGAUCGAC| 1441 CACAUU-GGG UC(UGAAA-- AA-)ACCCCA A|UGCgu--( auua-)---- GUA----C-A 1501 GCA|GUG-AG GAAUAUUGGU C-AAUGGCC( ---------- ----GAAA)G GCUGA-ACC| 1561 A|-GUAA-C- UU-GGA---- -AGAAUGUAA --GUGU-AUU (--------a u--ugu---- 1621 --------)A AUACAAUAAC GAUU|----- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- -(-------- )aacucguau aaaauucuaa 1801 auaggauaau gauaaugaca auuuccuauu ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- -----UAUAA GUCUU|-GAC 1921 -CAAAU---U ACGU-G(-CC AGCAGUC-GC -GGU-AA)-U ACGUAG|--- -AAG-ACU-- 1981 AGUGU-UAGU CAU--CUUUA UUAGGU|UUA AAGGGUACCU -A-GACG|GU AAAUUA--AA 2041 |CUC------ ---------- -------(-- --uaaau)-- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ------GAGu ---------- ---------- 2221 ---------- ---------- ---------- ---------- ------AC|U UUUUUAC-UA 2281 G-----AGUU -Uu-AUgu-g -AGAAG--GA -----|AGAA UUUCUG-GAG ---UAGGG(a 2341 ugaaa)UAC- uuu---GAUA CCAG-AAG-G ACU------- ----GGUAAC -GGC(-GAAG 2401 -)GC|A---- ----UCCUUC U-AUGUAAA- AA---CUGAC GUU--GAGGG ACGAA-GGCU 2461 U-GGG---UA GCAAUAAGG( AUUAGAUAC) CCUA-GUAG| -UCCA-AGC- AGAAAA-UGA 2521 U--GAAU-GU |CA|UAGGCU AGAuuu(aaa a-u------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---)-----U UAGUCUA-UA AAU(GAAA)G UG-UAAGCAU 2701 U-C|--C|AC C-UCAA-GAG UAAUAUG(-- -GCAA--)CA UAU--AAACU GAAAUCAU-U 2761 AG|ACCGUU- UCUGAA---A CCAGUAGU|G AAGUAUGU-U |AUUUAA-UU CG(AUAACCC 2821 G--------- ----)CGAAA A-ACCUUACC ACAGUuugaa uaacaauaaa a--------- 2881 ---------u ug--u----- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------u a--c---AAG CGC-UG|CA- 3121 |CG|-GC--U |G------UC UU-UA|G-UU AAU-|GUC(G --UGA)GAUU U--GG(UUA- 3181 ACU)CCUC-- U-AAUUAACG AAA-ACCCU- ----cacuuu auuug----- -----(aaua 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|-----c auaaagugGU -UCGCCA-C- (UACA-U)-- UGGaccAGAU 3781 A----AUA-G GGAUUA-AGA C-AAGUCAUC A|UGGC|CUA AAU------- ---------A 3841 C-U-GU-GGG CU-AUA--GA -CGUGCCACA UA--CGCCuu a-ACAA-AGG GA--UGCGA- 3901 UAUU<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--G UGA--)AAUG -GAGCUAAUC CCCA--aaau uGG-AUAUAA 4021 ---------- -----UAUGG --AUUGU-AG U-C(------ ---------- ---------- 4081 ---------- ---------- UGUAAc-uc) G-AC-U--AC -A--UGAAU- -AAGGAAUUA 4141 C-U--AGUAA U-CGUGAA(- UCACCAUC-- --)GUCACGG U-GAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -UUU--A-AU 4261 CUCAGC-UA- GGUACUAA-C -CACUCGUCA G-GCG--CUG AAA-GGAgua ugugcaa--- 4321 ---------- ---------- ---------- ---------- ---------< -uaaguuuga 4381 uuugc-uuau guauuaauau auauaa(uca g)guauauaa auauguaagu auuauuuucg 4441 ua-------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 -------ugc augacUUUGA UUGG-UGU-U AAGUCGAAAU AU~~~~~~-~ ~~~-~~(~~~ 4621 -~)~~~-~~- ~~~~~~~~~~ -----~~~-| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS mt.A.fla.3 5213 bp RNA RNA 11-JAN-191 DEFINITION Mitochondrion Aspergillus flavus var. columnaris. ACCESSION No information KEYWORDS No information. SOURCE Mitochondrion Aspergillus flavus var. columnaris. ORGANISM Mitochondrion Aspergillus flavus var. columnaris. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: U29221 LOCUS AFU29221 1374 bp DNA PLN 02-JAN-1996 DEFINITION Aspergillus flavus var. columnaris NRRL 4823 mitochondrial ribosomal RNA, small subunit, mitochondrial gene, partial sequence. ACCESSION U29221 NID g1144025 KEYWORDS . SOURCE Aspergillus flavus var. columnaris. ORGANISM Mitochondrion Aspergillus flavus var. columnaris Eukaryotae; mitochondrial eukaryotes; Eumycota; Ascomycotina; Plectomycetes; Eurotiales; Trichocomaceae; mitosporic Trichocomaceae; Aspergillus. REFERENCE 1 (bases 1 to 1374) AUTHORS Peterson,S.W. TITLE Phylogenetic analysis of Aspergillus based upon rDNA sequence JOURNAL Unpublished REFERENCE 2 (bases 1 to 1374) AUTHORS Peterson,S.W. TITLE Direct Submission JOURNAL Submitted (15-JUN-1995) Stephen W. Peterson, National Center for Agricultural Utilization Research, Microbial Properties Research, 1815 N. University St., Peoria, IL 61604, USA COMMENT NCBI gi: 1144025 FEATURES Location/Qualifiers source 1..1374 /strain="NRRL 4823" /organism="Aspergillus flavus var. columnaris" /mitochondrion rRNA <1..>1374 /product="small subunit ribosomal RNA" BASE COUNT 475 a 210 c 288 g 401 t ORIGIN BASE COUNT 475 a 210 c 288 g 401 t 3839 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- -------~~~ ~~~~~~~~~~ 661 (~~~-)~-~~ ~|~~~~~-~G AUUGAACGCU -G-UCCA-AG |UA-CU--UG ACAC-A-UGC 721 -UAAUCG-AA CGACU|AAUU AGUU------ ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- ---------- ---uuaaua- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- AACUAAGU|A 961 G--UA-GU|G GUGUACAGGU GAGUAA-aaG A|UAA-UUug --GC---UAC CUUAA-AGUA 1021 AGGGG----- -------(aa aa--)----- --------UC CCUUauaa-- ---------- 1081 ---------- ---------- ---------- ---------- -----ac--g aaaggaaaau 1141 aaaag-ucc- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ------GCUU UAAGAUGUU- --AAUCU-UU |a------uc uCGG--GG-- 1321 -AGUAGUAGG AA-AG(GUAA UGA------- ---------- ---------- ------)CUU 1381 UUCUA|---- GCUAAa---A U|CCGUA-GU CG|--UGACU (GAGA--)GG UCGAUCGAC| 1441 CACAUU-GGG UC(UGAAA-- AA-)ACCCCA A|UGCgu--( auua-)---- GUA----C-A 1501 GCA|GUG-AG GAAUAUUGGU C-AAUGGCC( ---------- ----GAAA)G GCUGA-ACC| 1561 A|-GUAA-C- UU-GGA---- -AGAAUGUAA --GUGU-AUU (--------a u--ugu---- 1621 --------)A AUACAAUAAC GAUU|----- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- -(-------- )aacucguau aaaauucuaa 1801 auaggauaau gauaaugaca auuuccuauu ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- -----UAUAA GUCUU|-GAC 1921 -CAAAU---U ACGU-G(-CC AGCAGUC-GC -GGU-AA)-U ACGUAG|--- -AAG-ACU-- 1981 AGUGU-UAGU CAU--CUUUA UUAGGU|UUA AAGGGUACCU -A-GACG|GU AAAUUA--AA 2041 |CUC------ ---------- -------(-- --uaaau)-- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ------GAGu ---------- ---------- 2221 ---------- ---------- ---------- ---------- ------AC|U UUUUUAC-UA 2281 G-----AGUU -Uu-AUgu-g -AGAAG--GA -----|AGAA UUUCUG-GAG ---UAGGG(a 2341 ugaaa)UAC- uuu---GAUA CCAG-AAG-G ACU------- ----GGUAAC -GGC(-GAAG 2401 -)GC|A---- ----UCCUUC U-AUGUAAA- AA---CUGAC GUU--GAGGG ACGAA-GGCU 2461 U-GGG---UA GCAAUAAGG( AUUAGAUAC) CCUA-GUAG| -UCCA-AGC- AGAAAA-UGA 2521 U--GAAU-GU |CA|UAGGCU AGAuuu(aaa a-u------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---)-----U UAGUCUA-UA AAU(GAAA)G UG-UAAGCAU 2701 U-C|--C|AC C-UCAA-GAG UAAUAUG(-- -GCAA--)CA UAU--AAACU GAAAUCAU-U 2761 AG|ACCGUU- UCUGAA---A CCAGUAGU|G AAGUAUGU-U |AUUUAA-UU CG(AUAACCC 2821 G--------- ----)CGAAA A-ACCUUACC ACAGUuugaa uaacaauaaa a--------- 2881 ---------u ug--u----- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------u a--c---AAG CGC-UG|CA- 3121 |CG|-GC--U |G------UC UU-UA|G-UU AAU-|GUC(G --UGA)GAUU U--GG(UUA- 3181 ACU)CCUC-- U-AAUUAACG AAA-ACCCU- ----cacuuu auuug----- -----(aaua 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|-----c auaaagugGU -UCGCCA-C- (UACA-U)-- UGGaccAGAU 3781 A----AUA-G GGAUUA-AGA C-AAGUCAUC A|UGGC|CUA AAU------- ---------A 3841 C-U-GU-GGG CU-AUA--GA -CGUGCCACA UA--CGCCuu a-ACAA-AGG GA--UGCGA- 3901 UAUU<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--G UGA--)AAUG -GAGCUAAUC CCCA--aaau uGG-AUAUAA 4021 ---------- -----UAUGG --AUUGU-AG U-C(------ ---------- ---------- 4081 ---------- ---------- UGUAAc-uc) G-AC-U--AC -A--UGAAU- -AAGGAAUUA 4141 C-U--AGUAA U-CGUGAA(- UCACCAUC-- --)GUCACGG U-GAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -UUU--A-AU 4261 CUCAGC-UA- GGUACUAA-C -CACUCGUCA G-GCG--CUG AAA-GGAgua ugugcaa--- 4321 ---------- ---------- ---------- ---------- ---------< -uaaguuuga 4381 uuugc-uuau guauuaauau auauaa(uca g)guauauaa auauguaagu auuauuuucg 4441 ua-------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 -------ugc augacUUUGA UUGG-UGU-U AAGUCGAAAU AU~~~~~~-~ ~~~-~~(~~~ 4621 -~)~~~-~~- ~~~~~~~~~~ -----~~~-| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS mt.A.kamba 5213 bp RNA RNA 11-JAN-191 DEFINITION Mitochondrion Aspergillus kambarensis. ACCESSION No information KEYWORDS No information. SOURCE Mitochondrion Aspergillus kambarensis. ORGANISM Mitochondrion Aspergillus kambarensis. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: U29219 LOCUS AKU29219 1374 bp DNA PLN 02-JAN-1996 DEFINITION Aspergillus kambarensis NRRL 3751 mitochondrial ribosomal RNA, small subunit, mitochondrial gene, partial sequence. ACCESSION U29219 NID g1144023 KEYWORDS . SOURCE Aspergillus kambarensis. ORGANISM Mitochondrion Aspergillus kambarensis Eukaryotae; mitochondrial eukaryotes; Eumycota; Ascomycotina; Plectomycetes; Eurotiales; Trichocomaceae; mitosporic Trichocomaceae; Aspergillus. REFERENCE 1 (bases 1 to 1374) AUTHORS Peterson,S.W. TITLE Phylogenetic analysis of Aspergillus based upon rDNA sequence JOURNAL Unpublished REFERENCE 2 (bases 1 to 1374) AUTHORS Peterson,S.W. TITLE Direct Submission JOURNAL Submitted (15-JUN-1995) Stephen W. Peterson, National Center for Agricultural Utilization Research, Microbial Properties Research, 1815 N. University St., Peoria, IL 61604, USA COMMENT NCBI gi: 1144023 FEATURES Location/Qualifiers source 1..1374 /strain="NRRL 3751" /organism="Aspergillus kambarensis" /mitochondrion rRNA <1..>1374 /product="small subunit ribosomal RNA" BASE COUNT 475 a 210 c 288 g 401 t ORIGIN BASE COUNT 475 a 210 c 288 g 401 t 3839 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- -------~~~ ~~~~~~~~~~ 661 (~~~-)~-~~ ~|~~~~~-~G AUUGAACGCU -G-UCCA-AG |UA-CU--UG ACAC-A-UGC 721 -UAAUCG-AA CGACU|AAUU AGUU------ ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- ---------- ---uuaaua- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- AACUAAGU|A 961 G--UA-GU|G GUGUACAGGU GAGUAA-aaG A|UAA-UUug --GC---UAC CUUAA-AGUA 1021 AGGGG----- -------(aa aa--)----- --------UC CCUUauaa-- ---------- 1081 ---------- ---------- ---------- ---------- -----ac--g aaaggaaaau 1141 aaaag-ucc- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ------GCUU UAAGAUGUU- --AAUCU-UU |a------uc uCGG--GG-- 1321 -AGUAGUAGG AA-AG(GUAA UGA------- ---------- ---------- ------)CUU 1381 UUCUA|---- GCUAAa---A U|CCGUA-GU CG|--UGACU (GAGA--)GG UCGAUCGAC| 1441 CACAUU-GGG UC(UGAAA-- AA-)ACCCCA A|UGCgu--( auua-)---- GUA----C-A 1501 GCA|GUG-AG GAAUAUUGGU C-AAUGGCC( ---------- ----GAAA)G GCUGA-ACC| 1561 A|-GUAA-C- UU-GGA---- -AGAAUGUAA --GUGU-AUU (--------a u--ugu---- 1621 --------)A AUACAAUAAC GAUU|----- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- -(-------- )aacucguau aaaauucuaa 1801 auaggauaau gauaaugaca auuuccuauu ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- -----UAUAA GUCUU|-GAC 1921 -CAAAU---U ACGU-G(-CC AGCAGUC-GC -GGU-AA)-U ACGUAG|--- -AAG-ACU-- 1981 AGUGU-UAGU CAU--CUUUA UUAGGU|UUA AAGGGUACCU -A-GACG|GU AAAUUA--AA 2041 |CUC------ ---------- -------(-- --uaaau)-- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ------GAGu ---------- ---------- 2221 ---------- ---------- ---------- ---------- ------AC|U UUUUUAC-UA 2281 G-----AGUU -Uu-AUgu-g -AGAAG--GA -----|AGAA UUUCUG-GAG ---UAGGG(a 2341 ugaaa)UAC- uuu---GAUA CCAG-AAG-G ACU------- ----GGUAAC -GGC(-GAAG 2401 -)GC|A---- ----UCCUUC U-AUGUAAA- AA---CUGAC GUU--GAGGG ACGAA-GGCU 2461 U-GGG---UA GCAAUAAGG( AUUAGAUAC) CCUA-GUAG| -UCCA-AGC- AGAAAA-UGA 2521 U--GAAU-GU |CA|UAGGCU AGAuuu(aaa a-u------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---)-----U UAGUCUA-UA AAU(GAAA)G UG-UAAGCAU 2701 U-C|--C|AC C-UCAA-GAG UAAUAUG(-- -GCAA--)CA UAU--AAACU GAAAUCAU-U 2761 AG|ACCGUU- UCUGAA---A CCAGUAGU|G AAGUAUGU-U |AUUUAA-UU CG(AUAACCC 2821 G--------- ----)CGAAA A-ACCUUACC ACAGUuugaa uaacaauaaa a--------- 2881 ---------u ug--u----- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------u a--c---AAG CGC-UG|CA- 3121 |CG|-GC--U |G------UC UU-UA|G-UU AAU-|GUC(G --UGA)GAUU U--GG(UUA- 3181 ACU)CCUC-- U-AAUUAACG AAA-ACCCU- ----cacuuu auuug----- -----(aaua 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|-----c auaaagugGU -UCGCCA-C- (UACA-U)-- UGGaccAGAU 3781 A----AUA-G GGAUUA-AGA C-AAGUCAUC A|UGGC|CUA AAU------- ---------A 3841 C-U-GU-GGG CU-AUA--GA -CGUGCCACA UA--CGCCuu a-ACAA-AGG GA--UGCGA- 3901 UAUU<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--G UGA--)AAUG -GAGCUAAUC CCCA--aaau uGG-AUAUAA 4021 ---------- -----UAUGG --AUUGU-AG U-C(------ ---------- ---------- 4081 ---------- ---------- UGUAAc-uc) G-AC-U--AC -A--UGAAU- -AAGGAAUUA 4141 C-U--AGUAA U-CGUGAA(- UCACCAUC-- --)GUCACGG U-GAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -UUU--A-AU 4261 CUCAGC-UA- GGUACUAA-C -CACUCGUCA G-GCG--CUG AAA-GGAgua ugugcaa--- 4321 ---------- ---------- ---------- ---------- ---------< -uaaguuuga 4381 uuugc-uuau guauuaauau auauaa(uca g)guauauaa auauguaagu auuauuuucg 4441 ua-------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 -------ugc augacUUUGA UUGG-UGU-U AAGUCGAAAU AU~~~~~~-~ ~~~-~~(~~~ 4621 -~)~~~-~~- ~~~~~~~~~~ -----~~~-| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS mt.A.lepor 5213 bp RNA RNA 11-JAN-191 DEFINITION Mitochondrion Aspergillus leporis. ACCESSION No information KEYWORDS No information. SOURCE Mitochondrion Aspergillus leporis. ORGANISM Mitochondrion Aspergillus leporis. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: U29228 LOCUS ALU29228 1375 bp DNA PLN 02-JAN-1996 DEFINITION Aspergillus leporis NRRL 6599 mitochondrial ribosomal RNA, small subunit, mitochondrial gene, partial sequence. ACCESSION U29228 NID g1144032 KEYWORDS . SOURCE Aspergillus leporis. ORGANISM Mitochondrion Aspergillus leporis Eukaryotae; mitochondrial eukaryotes; Eumycota; Ascomycotina; Plectomycetes; Eurotiales; Trichocomaceae; mitosporic Trichocomaceae; Aspergillus. REFERENCE 1 (bases 1 to 1375) AUTHORS Peterson,S.W. TITLE Phylogenetic analysis of Aspergillus based upon rDNA sequence JOURNAL Unpublished REFERENCE 2 (bases 1 to 1375) AUTHORS Peterson,S.W. TITLE Direct Submission JOURNAL Submitted (15-JUN-1995) Stephen W. Peterson, National Center for Agricultural Utilization Research, Microbial Properties Research, 1815 N. University St., Peoria, IL 61604, USA COMMENT NCBI gi: 1144032 FEATURES Location/Qualifiers source 1..1375 /strain="NRRL 6599" /organism="Aspergillus leporis" /mitochondrion rRNA <1..>1375 /product="small subunit ribosomal RNA" BASE COUNT 475 a 209 c 286 g 405 t ORIGIN BASE COUNT 475 a 209 c 286 g 405 t 3838 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- -------~~~ ~~~~~~~~~~ 661 (~~~-)~-~~ ~|~~~~~-~G AUUGAACGCU -G-UCCA-AG |UA-CU--UG ACAC-A-UGC 721 -UAAUCG-AA CGACU|AAUU AGUUu----- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- ---------- ---uuaua-- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- AACUAAGU|A 961 G--UA-GU|G GUGUACAGGU GAGUAA-aaG A|UAA-UUug --GC---UAC CUUAA-AGUA 1021 AGGGG----- -------(aa aa--)----- --------UC CCUUau---- ---------- 1081 ---------- ---------- ---------- ---------- -----aaaag aaaggaaaau 1141 aaaaagucc- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ------GCUU UAAGAUGUU- --AAUCU-UU |a------uc uCGG--UG-- 1321 -AGUAGUAGG AA-AG(GUAA UGA------- ---------- ---------- ------)CUU 1381 UUCUA|---- GCUAAa---A U|CCGUA-GU CG|--UGACU (GAGA--)GG UCGAUCGAC| 1441 CACAUU-GGG UC(UGAAA-- AA-)ACCCCA A|UGCgu--( auua-)---- GUA----C-A 1501 GCA|GUG-AG GAAUAUUGGU C-AAUGGCC( ---------- ----GAAA)G GCUGA-ACC| 1561 A|-GUAA-C- UU-GGA---- -AGAAUGUAA --GUGU-AUU (--------a uaau------ 1621 --------)A AUACAAUAAC GAUU|----- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- -(-------- )aacucguau aaaauucuaa 1801 auaggauaau gauaaugaca auuuccuauu ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- -----UAUAA GUCUU|-GAC 1921 -CAAAU---U ACGU-G(-CC AGCAGUC-GC -GGU-AA)-U ACGUAG|--- -AAG-ACU-- 1981 AGUGU-UAGU CAU--CUUUA UUAGGU|UUA AAGGGUACCU -A-GACG|GU AAAUUA--AA 2041 |CUC------ ---------- -------(-- --uaaau)-- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ------GAGu ---------- ---------- 2221 ---------- ---------- ---------- ---------- ------AC|U UUUUUAC-UA 2281 G-----AGUU -Uu-AUgu-g -AGAAG--GA -----|AGAA UUUCUG-GAG ---UAGGG(a 2341 ugaaa)UAC- uuu---GAUA CCAG-AAG-G ACU------- ----GGUAAC -GGC(-GAAG 2401 -)GC|A---- ----UCCUUC U-AUGUAAA- AA---CUGAC GUU--GAGGG ACGAA-GGCU 2461 U-GGG---UA GCAAUAAGG( AUUAGAUAC) CCUA-GUAG| -UCCA-AGC- AGAAAA-UGA 2521 U--GAAU-GU |CA|UAGGCU AGAuua(uau a-u------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---)-----U UAGUCUA-UA AAU(GAAA)G UG-UAAGCAU 2701 U-C|--C|AC C-UCAA-GAG UAAUAUG(-- -GCAA--)CA UAU--AAACU GAAAUCAU-U 2761 AG|ACCGUU- UCUGAA---A CCAGUAGU|G AAGUAUGU-U |AUUUAA-UU CG(AUAACCC 2821 G--------- ----)CGAAA A-ACCUUACC UCAGUuugaa uaacaauaaa a--------- 2881 ---------u ug--u----- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------u a--c---AAG CGC-UG|CA- 3121 |CG|-GC--U |G------UC UU-UA|G-UU AAU-|GUC(G --UGA)GAUU U--GG(UUA- 3181 ACU)CCUC-- U-AAUUAACG AAA-ACCCU- ----cacuuu auuug----- -----(uaua 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|-----c auaaagugGU -UCGCCA-C- (UACA-U)-- UGGaccAGAU 3781 A----AUA-G GGAUUA-AGA C-AAGUCAUC A|UGGC|CUA AAU------- ---------A 3841 C-U-GU-GGG CU-AUA--GA -CGUGCCACA UA--CGCCuu a-ACAA-AGG GA--UGCGA- 3901 UAUU<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--G UGA--)AAUG -GAGCUAAUC CCCA--aaau uGG-AUAUAA 4021 ---------- -----UAUGG --AUUGU-AG U-C(------ ---------- ---------- 4081 ---------- ---------- UGUAAc-uc) G-AC-U--AC -A--UGAAU- -AAGGAAUUA 4141 C-U--AGUAA U-CGUGAA(- UCACCAUC-- --)GUCACGG U-GAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -UUU--A-AU 4261 CUCAGC-UA- GGUACUAA-C -CACUCGUCA G-GCG--CUG AAA-GGAgua ugugcaa--- 4321 ---------- ---------- ---------- ---------- ---------< -uaaguuuga 4381 uuugc-uuau guauuaauau auauaa(uca g)guauauaa auauguaagu auuauuuucg 4441 ua-------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 -------ugc augacUUUGA UUGG-UGU-U AAGUCGAAAU AU~~~~~~-~ ~~~-~~(~~~ 4621 -~)~~~-~~- ~~~~~~~~~~ -----~~~-| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS mt.A.nom.1 5213 bp RNA RNA 11-JAN-191 DEFINITION Mitochondrion Aspergillus nomius. ACCESSION No information KEYWORDS No information. SOURCE Mitochondrion Aspergillus nomius. ORGANISM Mitochondrion Aspergillus nomius. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: U29218 LOCUS ANU29218 1374 bp DNA PLN 02-JAN-1996 DEFINITION Aspergillus nomius NRRL 3161 mitochondrial ribosomal RNA, small subunit, mitochondrial gene, partial sequence. ACCESSION U29218 NID g1144022 KEYWORDS . SOURCE Aspergillus nomius. ORGANISM Mitochondrion Aspergillus nomius Eukaryotae; mitochondrial eukaryotes; Eumycota; Ascomycotina; Plectomycetes; Eurotiales; Trichocomaceae; mitosporic Trichocomaceae; Aspergillus. REFERENCE 1 (bases 1 to 1374) AUTHORS Peterson,S.W. TITLE Phylogenetic analysis of Aspergillus based upon rDNA sequence JOURNAL Unpublished REFERENCE 2 (bases 1 to 1374) AUTHORS Peterson,S.W. TITLE Direct Submission JOURNAL Submitted (15-JUN-1995) Stephen W. Peterson, National Center for Agricultural Utilization Research, Microbial Properties Research, 1815 N. University St., Peoria, IL 61604, USA COMMENT NCBI gi: 1144022 FEATURES Location/Qualifiers source 1..1374 /strain="NRRL 3161" /organism="Aspergillus nomius" /mitochondrion rRNA <1..>1374 /product="small subunit ribosomal RNA" BASE COUNT 475 a 212 c 287 g 400 t ORIGIN BASE COUNT 475 a 212 c 287 g 400 t 3839 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- -------~~~ ~~~~~~~~~~ 661 (~~~-)~-~~ ~|~~~~~-~G AUUGAACGCU -G-UCCA-AG |UA-CU--UG ACAC-A-UGC 721 -UAAUCG-AA CGACU|AAUU AGUU------ ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- ---------- ---uuaacu- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- AACUAAGU|A 961 G--UA-GU|G GUGUACAGGU GAGUAA-aaG A|UAA-UUug --GC---UAC CUUAA-AGUA 1021 AGGGG----- -------(aa aa--)----- --------UC CCUUauaa-- ---------- 1081 ---------- ---------- ---------- ---------- -----aca-- aaaggaaaau 1141 aaaag-ucc- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ------GCUU UAAGAUGUU- --AAUCU-UU |a------uc uCGG--GG-- 1321 -AGUAGUAGG AA-AG(GUAA UGA------- ---------- ---------- ------)CUU 1381 UUCUA|---- GCUAAa---A U|CCGUA-GU CG|--UGACU (GAGA--)GG UCGAUCGAC| 1441 CACAUU-GGG UC(UGAAA-- AA-)ACCCCA A|UGCgu--( auua-)---- GUA----C-A 1501 GCA|GUG-AG GAAUAUUGGU C-AAUGGCC( ---------- ----GAAA)G GCUGA-ACC| 1561 A|-GUAA-C- UU-GGA---- -AGAAUGUAA --GUGU-AUU (--------a u--ugu---- 1621 --------)A AUACAAUAAC GAUU|----- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- -(-------- )aacucguau aaaauucuaa 1801 auaggauaau gauaaugaca auuuccuauu ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- -----UAUAA GUCUU|-GAC 1921 -CAAAU---U ACGU-G(-CC AGCAGUC-GC -GGU-AA)-U ACGUAG|--- -AAG-ACU-- 1981 AGUGU-UAGU CAU--CUUUA UUAGGU|UUA AAGGGUACCU -A-GACG|GU AAAUUA--AA 2041 |CUC------ ---------- -------(-- --uaaau)-- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ------GAGu ---------- ---------- 2221 ---------- ---------- ---------- ---------- ------AC|U UUUUUAC-UA 2281 G-----AGUU -Uu-AUgu-g -AGAAG--GA -----|AGAA UUUCUG-GAG ---UAGGG(a 2341 ugaaa)UAC- uuu---GAUA CCAG-AAG-G ACU------- ----GGUAAC -GGC(-GAAG 2401 -)GC|A---- ----UCCUUC U-AUGUAAA- AA---CUGAC GUU--GAGGG ACGAA-GGCU 2461 U-GGG---UA GCAAUAAGG( AUUAGAUAC) CCUA-GUAG| -UCCA-AGC- AGAAAA-UGA 2521 U--GAAU-GU |CA|UAGGCU AGAuuu(aaa a-u------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---)-----U UAGUCUA-UA AAU(GAAA)G UG-UAAGCAU 2701 U-C|--C|AC C-UCAA-GAG UAAUAUG(-- -GCAA--)CA UAU--AAACU GAAAUCAU-U 2761 AG|ACCGUU- UCUGAA---A CCAGUAGU|G AAGUAUGU-U |AUUUAA-UU CG(AUAACCC 2821 G--------- ----)CGAAA A-ACCUUACC ACAGUuugaa uaacaauaaa a--------- 2881 ---------u ug--u----- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------u a--c---AAG CGC-UG|CA- 3121 |CG|-GC--U |G------UC UU-UA|G-UU AAU-|GUC(G --UGA)GAUU U--GG(UUA- 3181 ACU)CCUC-- U-AAUUAACG AAA-ACCCU- ----cacuuu auuug----- -----(aaua 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|-----c auaaagugGU -UCGCCA-C- (UACA-U)-- UGGaccAGAU 3781 A----AUA-G GGAUUA-AGA C-AAGUCAUC A|UGGC|CUA AAU------- ---------A 3841 C-U-GU-GGG CU-AUA--GA -CGUGCCACA UA--CGCCuu a-ACAA-AGG GA--UGCGA- 3901 UAUU<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--G UGA--)AAUG -GAGCUAAUC CCCA--aaau uGG-AUAUAA 4021 ---------- -----UAUGG --AUUGU-AG U-C(------ ---------- ---------- 4081 ---------- ---------- UGUAAc-uc) G-AC-U--AC -A--UGAAU- -AAGGAAUUA 4141 C-U--AGUAA U-CGUGAA(- UCACCAUC-- --)GUCACGG U-GAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -UUU--A-AU 4261 CUCAGC-UA- GGUACUAA-C -CACUCGUCA G-GCG--CUG AAA-GGAgua ugugcaa--- 4321 ---------- ---------- ---------- ---------- ---------< -uaaguuuga 4381 uuugc-uuau guauuaauau auauaa(uca g)guauauaa auauguaagu auuauuuccg 4441 ua-------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 -------ugc augacUUUGA UUGG-UGU-U AAGUCGAAAU AU~~~~~~-~ ~~~-~~(~~~ 4621 -~)~~~-~~- ~~~~~~~~~~ -----~~~-| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS mt.A.nom.2 5213 bp RNA RNA 11-JAN-191 DEFINITION Aspergillus nomius. ACCESSION No information KEYWORDS No information. SOURCE Aspergillus nomius. ORGANISM Aspergillus nomius. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: U29225 LOCUS ANU29225 1374 bp DNA PLN 02-JAN-1996 DEFINITION Aspergillus nomius NRRL 6108 mitochondrial ribosomal RNA, small subunit, mitochondrial gene, partial sequence. ACCESSION U29225 NID g1144029 KEYWORDS . SOURCE Aspergillus nomius. ORGANISM Mitochondrion Aspergillus nomius Eukaryotae; mitochondrial eukaryotes; Eumycota; Ascomycotina; Plectomycetes; Eurotiales; Trichocomaceae; mitosporic Trichocomaceae; Aspergillus. REFERENCE 1 (bases 1 to 1374) AUTHORS Peterson,S.W. TITLE Phylogenetic analysis of Aspergillus based upon rDNA sequence JOURNAL Unpublished REFERENCE 2 (bases 1 to 1374) AUTHORS Peterson,S.W. TITLE Direct Submission JOURNAL Submitted (15-JUN-1995) Stephen W. Peterson, National Center for Agricultural Utilization Research, Microbial Properties Research, 1815 N. University St., Peoria, IL 61604, USA COMMENT NCBI gi: 1144029 FEATURES Location/Qualifiers source 1..1374 /strain="NRRL 6108" /organism="Aspergillus nomius" /mitochondrion rRNA <1..>1374 /product="small subunit ribosomal RNA" BASE COUNT 475 a 212 c 287 g 400 t ORIGIN BASE COUNT 475 a 212 c 287 g 400 t 3839 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- -------~~~ ~~~~~~~~~~ 661 (~~~-)~-~~ ~|~~~~~-~G AUUGAACGCU -G-UCCA-AG |UA-CU--UG ACAC-A-UGC 721 -UAAUCG-AA CGACU|AAUU AGUU------ ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- ---------- ---uuaacu- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- AACUAAGU|A 961 G--UA-GU|G GUGUACAGGU GAGUAA-aaG A|UAA-UUug --GC---UAC CUUAA-AGUA 1021 AGGGG----- -------(aa aa--)----- --------UC CCUUauaa-- ---------- 1081 ---------- ---------- ---------- ---------- -----aca-- aaaggaaaau 1141 aaaag-ucc- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ------GCUU UAAGAUGUU- --AAUCU-UU |a------uc uCGG--GG-- 1321 -AGUAGUAGG AA-AG(GUAA UGA------- ---------- ---------- ------)CUU 1381 UUCUA|---- GCUAAa---A U|CCGUA-GU CG|--UGACU (GAGA--)GG UCGAUCGAC| 1441 CACAUU-GGG UC(UGAAA-- AA-)ACCCCA A|UGCgu--( auua-)---- GUA----C-A 1501 GCA|GUG-AG GAAUAUUGGU C-AAUGGCC( ---------- ----GAAA)G GCUGA-ACC| 1561 A|-GUAA-C- UU-GGA---- -AGAAUGUAA --GUGU-AUU (--------a u--ugu---- 1621 --------)A AUACAAUAAC GAUU|----- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- -(-------- )aacucguau aaaauucuaa 1801 auaggauaau gauaaugaca auuuccuauu ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- -----UAUAA GUCUU|-GAC 1921 -CAAAU---U ACGU-G(-CC AGCAGUC-GC -GGU-AA)-U ACGUAG|--- -AAG-ACU-- 1981 AGUGU-UAGU CAU--CUUUA UUAGGU|UUA AAGGGUACCU -A-GACG|GU AAAUUA--AA 2041 |CUC------ ---------- -------(-- --uaaau)-- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ------GAGu ---------- ---------- 2221 ---------- ---------- ---------- ---------- ------AC|U UUUUUAC-UA 2281 G-----AGUU -Uu-AUgu-g -AGAAG--GA -----|AGAA UUUCUG-GAG ---UAGGG(a 2341 ugaaa)UAC- uuu---GAUA CCAG-AAG-G ACU------- ----GGUAAC -GGC(-GAAG 2401 -)GC|A---- ----UCCUUC U-AUGUAAA- AA---CUGAC GUU--GAGGG ACGAA-GGCU 2461 U-GGG---UA GCAAUAAGG( AUUAGAUAC) CCUA-GUAG| -UCCA-AGC- AGAAAA-UGA 2521 U--GAAU-GU |CA|UAGGCU AGAuuu(aaa a-u------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---)-----U UAGUCUA-UA AAU(GAAA)G UG-UAAGCAU 2701 U-C|--C|AC C-UCAA-GAG UAAUAUG(-- -GCAA--)CA UAU--AAACU GAAAUCAU-U 2761 AG|ACCGUU- UCUGAA---A CCAGUAGU|G AAGUAUGU-U |AUUUAA-UU CG(AUAACCC 2821 G--------- ----)CGAAA A-ACCUUACC ACAGUuugaa uaacaauaaa a--------- 2881 ---------u ug--u----- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------u a--c---AAG CGC-UG|CA- 3121 |CG|-GC--U |G------UC UU-UA|G-UU AAU-|GUC(G --UGA)GAUU U--GG(UUA- 3181 ACU)CCUC-- U-AAUUAACG AAA-ACCCU- ----cacuuu auuug----- -----(aaua 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|-----c auaaagugGU -UCGCCA-C- (UACA-U)-- UGGaccAGAU 3781 A----AUA-G GGAUUA-AGA C-AAGUCAUC A|UGGC|CUA AAU------- ---------A 3841 C-U-GU-GGG CU-AUA--GA -CGUGCCACA UA--CGCCuu a-ACAA-AGG GA--UGCGA- 3901 UAUU<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--G UGA--)AAUG -GAGCUAAUC CCCA--aaau uGG-AUAUAA 4021 ---------- -----UAUGG --AUUGU-AG U-C(------ ---------- ---------- 4081 ---------- ---------- UGUAAc-uc) G-AC-U--AC -A--UGAAU- -AAGGAAUUA 4141 C-U--AGUAA U-CGUGAA(- UCACCAUC-- --)GUCACGG U-GAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -UUU--A-AU 4261 CUCAGC-UA- GGUACUAA-C -CACUCGUCA G-GCG--CUG AAA-GGAgua ugugcaa--- 4321 ---------- ---------- ---------- ---------- ---------< -uaaguuuga 4381 uuugc-uuau guauuaauau auauaa(uca g)guauauaa auauguaagu auuauuuccg 4441 ua-------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 -------ugc augacUUUGA UUGG-UGU-U AAGUCGAAAU AU~~~~~~-~ ~~~-~~(~~~ 4621 -~)~~~-~~- ~~~~~~~~~~ -----~~~-| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS mt.A.nom.3 5213 bp RNA RNA 11-JAN-191 DEFINITION Mitochondrion Aspergillus nomius. ACCESSION No information KEYWORDS No information. SOURCE Mitochondrion Aspergillus nomius. ORGANISM Mitochondrion Aspergillus nomius. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: U29226 LOCUS ANU29226 1374 bp DNA PLN 02-JAN-1996 DEFINITION Aspergillus nomius NRRL 6552 mitochondrial ribosomal RNA, small subunit, mitochondrial gene, partial sequence. ACCESSION U29226 NID g1144030 KEYWORDS . SOURCE Aspergillus nomius. ORGANISM Mitochondrion Aspergillus nomius Eukaryotae; mitochondrial eukaryotes; Eumycota; Ascomycotina; Plectomycetes; Eurotiales; Trichocomaceae; mitosporic Trichocomaceae; Aspergillus. REFERENCE 1 (bases 1 to 1374) AUTHORS Peterson,S.W. TITLE Phylogenetic analysis of Aspergillus based upon rDNA sequence JOURNAL Unpublished REFERENCE 2 (bases 1 to 1374) AUTHORS Peterson,S.W. TITLE Direct Submission JOURNAL Submitted (15-JUN-1995) Stephen W. Peterson, National Center for Agricultural Utilization Research, Microbial Properties Research, 1815 N. University St., Peoria, IL 61604, USA COMMENT NCBI gi: 1144030 FEATURES Location/Qualifiers source 1..1374 /strain="NRRL 6552" /organism="Aspergillus nomius" /mitochondrion rRNA <1..>1374 /product="small subunit ribosomal RNA" BASE COUNT 475 a 212 c 287 g 400 t ORIGIN BASE COUNT 475 a 212 c 287 g 400 t 3839 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- -------~~~ ~~~~~~~~~~ 661 (~~~-)~-~~ ~|~~~~~-~G AUUGAACGCU -G-UCCA-AG |UA-CU--UG ACAC-A-UGC 721 -UAAUCG-AA CGACU|AAUU AGUU------ ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- ---------- ---uuaacu- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- AACUAAGU|A 961 G--UA-GU|G GUGUACAGGU GAGUAA-aaG A|UAA-UUug --GC---UAC CUUAA-AGUA 1021 AGGGG----- -------(aa aa--)----- --------UC CCUUauaa-- ---------- 1081 ---------- ---------- ---------- ---------- -----aca-- aaaggaaaau 1141 aaaag-ucc- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ------GCUU UAAGAUGUU- --AAUCU-UU |a------uc uCGG--GG-- 1321 -AGUAGUAGG AA-AG(GUAA UGA------- ---------- ---------- ------)CUU 1381 UUCUA|---- GCUAAa---A U|CCGUA-GU CG|--UGACU (GAGA--)GG UCGAUCGAC| 1441 CACAUU-GGG UC(UGAAA-- AA-)ACCCCA A|UGCgu--( auua-)---- GUA----C-A 1501 GCA|GUG-AG GAAUAUUGGU C-AAUGGCC( ---------- ----GAAA)G GCUGA-ACC| 1561 A|-GUAA-C- UU-GGA---- -AGAAUGUAA --GUGU-AUU (--------a u--ugu---- 1621 --------)A AUACAAUAAC GAUU|----- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- -(-------- )aacucguau aaaauucuaa 1801 auaggauaau gauaaugaca auuuccuauu ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- -----UAUAA GUCUU|-GAC 1921 -CAAAU---U ACGU-G(-CC AGCAGUC-GC -GGU-AA)-U ACGUAG|--- -AAG-ACU-- 1981 AGUGU-UAGU CAU--CUUUA UUAGGU|UUA AAGGGUACCU -A-GACG|GU AAAUUA--AA 2041 |CUC------ ---------- -------(-- --uaaau)-- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ------GAGu ---------- ---------- 2221 ---------- ---------- ---------- ---------- ------AC|U UUUUUAC-UA 2281 G-----AGUU -Uu-AUgu-g -AGAAG--GA -----|AGAA UUUCUG-GAG ---UAGGG(a 2341 ugaaa)UAC- uuu---GAUA CCAG-AAG-G ACU------- ----GGUAAC -GGC(-GAAG 2401 -)GC|A---- ----UCCUUC U-AUGUAAA- AA---CUGAC GUU--GAGGG ACGAA-GGCU 2461 U-GGG---UA GCAAUAAGG( AUUAGAUAC) CCUA-GUAG| -UCCA-AGC- AGAAAA-UGA 2521 U--GAAU-GU |CA|UAGGCU AGAuuu(aaa a-u------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---)-----U UAGUCUA-UA AAU(GAAA)G UG-UAAGCAU 2701 U-C|--C|AC C-UCAA-GAG UAAUAUG(-- -GCAA--)CA UAU--AAACU GAAAUCAU-U 2761 AG|ACCGUU- UCUGAA---A CCAGUAGU|G AAGUAUGU-U |AUUUAA-UU CG(AUAACCC 2821 G--------- ----)CGAAA A-ACCUUACC ACAGUuugaa uaacaauaaa a--------- 2881 ---------u ug--u----- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------u a--c---AAG CGC-UG|CA- 3121 |CG|-GC--U |G------UC UU-UA|G-UU AAU-|GUC(G --UGA)GAUU U--GG(UUA- 3181 ACU)CCUC-- U-AAUUAACG AAA-ACCCU- ----cacuuu auuug----- -----(aaua 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|-----c auaaagugGU -UCGCCA-C- (UACA-U)-- UGGaccAGAU 3781 A----AUA-G GGAUUA-AGA C-AAGUCAUC A|UGGC|CUA AAU------- ---------A 3841 C-U-GU-GGG CU-AUA--GA -CGUGCCACA UA--CGCCuu a-ACAA-AGG GA--UGCGA- 3901 UAUU<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--G UGA--)AAUG -GAGCUAAUC CCCA--aaau uGG-AUAUAA 4021 ---------- -----UAUGG --AUUGU-AG U-C(------ ---------- ---------- 4081 ---------- ---------- UGUAAc-uc) G-AC-U--AC -A--UGAAU- -AAGGAAUUA 4141 C-U--AGUAA U-CGUGAA(- UCACCAUC-- --)GUCACGG U-GAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -UUU--A-AU 4261 CUCAGC-UA- GGUACUAA-C -CACUCGUCA G-GCG--CUG AAA-GGAgua ugugcaa--- 4321 ---------- ---------- ---------- ---------- ---------< -uaaguuuga 4381 uuugc-uuau guauuaauau auauaa(uca g)guauauaa auauguaagu auuauuuccg 4441 ua-------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 -------ugc augacUUUGA UUGG-UGU-U AAGUCGAAAU AU~~~~~~-~ ~~~-~~(~~~ 4621 -~)~~~-~~- ~~~~~~~~~~ -----~~~-| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS mt.A.nom.4 5213 bp RNA RNA 11-JAN-191 DEFINITION Mitochondrion Aspergillus nomius subsp. NRRL 3353. ACCESSION No information KEYWORDS No information. SOURCE Mitochondrion Aspergillus nomius subsp. NRRL 3353. ORGANISM Mitochondrion Aspergillus nomius. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: U29227 LOCUS ANU29227 1374 bp DNA PLN 02-JAN-1996 DEFINITION Aspergillus nomius NRRL 3353 mitochondrial ribosomal RNA, small subunit, mitochondrial gene, partial sequence. ACCESSION U29227 NID g1144031 KEYWORDS . SOURCE Aspergillus nomius. ORGANISM Mitochondrion Aspergillus nomius Eukaryotae; mitochondrial eukaryotes; Eumycota; Ascomycotina; Plectomycetes; Eurotiales; Trichocomaceae; mitosporic Trichocomaceae; Aspergillus. REFERENCE 1 (bases 1 to 1374) AUTHORS Peterson,S.W. TITLE Phylogenetic analysis of Aspergillus based upon rDNA sequence JOURNAL Unpublished REFERENCE 2 (bases 1 to 1374) AUTHORS Peterson,S.W. TITLE Direct Submission JOURNAL Submitted (15-JUN-1995) Stephen W. Peterson, National Center for Agricultural Utilization Research, Microbial Properties Research, 1815 N. University St., Peoria, IL 61604, USA COMMENT NCBI gi: 1144031 FEATURES Location/Qualifiers source 1..1374 /strain="NRRL 3353" /organism="Aspergillus nomius" /mitochondrion rRNA <1..>1374 /product="small subunit ribosomal RNA" BASE COUNT 475 a 212 c 287 g 400 t ORIGIN BASE COUNT 475 a 212 c 287 g 400 t 3839 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- -------~~~ ~~~~~~~~~~ 661 (~~~-)~-~~ ~|~~~~~-~G AUUGAACGCU -G-UCCA-AG |UA-CU--UG ACAC-A-UGC 721 -UAAUCG-AA CGACU|AAUU AGUU------ ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- ---------- ---uuaacu- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- AACUAAGU|A 961 G--UA-GU|G GUGUACAGGU GAGUAA-aaG A|UAA-UUug --GC---UAC CUUAA-AGUA 1021 AGGGG----- -------(aa aa--)----- --------UC CCUUauaa-- ---------- 1081 ---------- ---------- ---------- ---------- -----aca-- aaaggaaaau 1141 aaaag-ucc- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ------GCUU UAAGAUGUU- --AAUCU-UU |a------uc uCGG--GG-- 1321 -AGUAGUAGG AA-AG(GUAA UGA------- ---------- ---------- ------)CUU 1381 UUCUA|---- GCUAAa---A U|CCGUA-GU CG|--UGACU (GAGA--)GG UCGAUCGAC| 1441 CACAUU-GGG UC(UGAAA-- AA-)ACCCCA A|UGCgu--( auua-)---- GUA----C-A 1501 GCA|GUG-AG GAAUAUUGGU C-AAUGGCC( ---------- ----GAAA)G GCUGA-ACC| 1561 A|-GUAA-C- UU-GGA---- -AGAAUGUAA --GUGU-AUU (--------a u--ugu---- 1621 --------)A AUACAAUAAC GAUU|----- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- -(-------- )aacucguau aaaauucuaa 1801 auaggauaau gauaaugaca auuuccuauu ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- -----UAUAA GUCUU|-GAC 1921 -CAAAU---U ACGU-G(-CC AGCAGUC-GC -GGU-AA)-U ACGUAG|--- -AAG-ACU-- 1981 AGUGU-UAGU CAU--CUUUA UUAGGU|UUA AAGGGUACCU -A-GACG|GU AAAUUA--AA 2041 |CUC------ ---------- -------(-- --uaaau)-- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ------GAGu ---------- ---------- 2221 ---------- ---------- ---------- ---------- ------AC|U UUUUUAC-UA 2281 G-----AGUU -Uu-AUgu-g -AGAAG--GA -----|AGAA UUUCUG-GAG ---UAGGG(a 2341 ugaaa)UAC- uuu---GAUA CCAG-AAG-G ACU------- ----GGUAAC -GGC(-GAAG 2401 -)GC|A---- ----UCCUUC U-AUGUAAA- AA---CUGAC GUU--GAGGG ACGAA-GGCU 2461 U-GGG---UA GCAAUAAGG( AUUAGAUAC) CCUA-GUAG| -UCCA-AGC- AGAAAA-UGA 2521 U--GAAU-GU |CA|UAGGCU AGAuuu(aaa a-u------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---)-----U UAGUCUA-UA AAU(GAAA)G UG-UAAGCAU 2701 U-C|--C|AC C-UCAA-GAG UAAUAUG(-- -GCAA--)CA UAU--AAACU GAAAUCAU-U 2761 AG|ACCGUU- UCUGAA---A CCAGUAGU|G AAGUAUGU-U |AUUUAA-UU CG(AUAACCC 2821 G--------- ----)CGAAA A-ACCUUACC ACAGUuugaa uaacaauaaa a--------- 2881 ---------u ug--u----- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------u a--c---AAG CGC-UG|CA- 3121 |CG|-GC--U |G------UC UU-UA|G-UU AAU-|GUC(G --UGA)GAUU U--GG(UUA- 3181 ACU)CCUC-- U-AAUUAACG AAA-ACCCU- ----cacuuu auuug----- -----(aaua 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|-----c auaaagugGU -UCGCCA-C- (UACA-U)-- UGGaccAGAU 3781 A----AUA-G GGAUUA-AGA C-AAGUCAUC A|UGGC|CUA AAU------- ---------A 3841 C-U-GU-GGG CU-AUA--GA -CGUGCCACA UA--CGCCuu a-ACAA-AGG GA--UGCGA- 3901 UAUU<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--G UGA--)AAUG -GAGCUAAUC CCCA--aaau uGG-AUAUAA 4021 ---------- -----UAUGG --AUUGU-AG U-C(------ ---------- ---------- 4081 ---------- ---------- UGUAAc-uc) G-AC-U--AC -A--UGAAU- -AAGGAAUUA 4141 C-U--AGUAA U-CGUGAA(- UCACCAUC-- --)GUCACGG U-GAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -UUU--A-AU 4261 CUCAGC-UA- GGUACUAA-C -CACUCGUCA G-GCG--CUG AAA-GGAgua ugugcaa--- 4321 ---------- ---------- ---------- ---------- ---------< -uaaguuuga 4381 uuugc-uuau guauuaauau auauaa(uca g)guauauaa auauguaagu auuauuuccg 4441 ua-------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 -------ugc augacUUUGA UUGG-UGU-U AAGUCGAAAU AU~~~~~~-~ ~~~-~~(~~~ 4621 -~)~~~-~~- ~~~~~~~~~~ -----~~~-| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS mt.A.oryza 5213 bp RNA RNA 11-JAN-191 DEFINITION Mitochondrion Aspergillus oryzae var. effusus. ACCESSION No information KEYWORDS No information. SOURCE Mitochondrion Aspergillus oryzae var. effusus. ORGANISM Mitochondrion Aspergillus oryzae var. effusus. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: U29215 LOCUS AOU29215 1374 bp DNA PLN 02-JAN-1996 DEFINITION Aspergillus oryzae var. effusus NRRL 1958 mitochondrial ribosomal RNA, small subunit, mitochondrial gene, partial sequence. ACCESSION U29215 NID g1144019 KEYWORDS . SOURCE Aspergillus oryzae var. effusus. ORGANISM Mitochondrion Aspergillus oryzae var. effusus Eukaryotae; mitochondrial eukaryotes; Eumycota; Ascomycotina; Plectomycetes; Eurotiales; Trichocomaceae; mitosporic Trichocomaceae; Aspergillus. REFERENCE 1 (bases 1 to 1374) AUTHORS Peterson,S.W. TITLE Phylogenetic analysis of Aspergillus based upon rDNA sequence JOURNAL Unpublished REFERENCE 2 (bases 1 to 1374) AUTHORS Peterson,S.W. TITLE Direct Submission JOURNAL Submitted (15-JUN-1995) Stephen W. Peterson, National Center for Agricultural Utilization Research, Microbial Properties Research, 1815 N. University St., Peoria, IL 61604, USA COMMENT NCBI gi: 1144019 FEATURES Location/Qualifiers source 1..1374 /strain="NRRL 1958" /organism="Aspergillus oryzae var. effusus" /mitochondrion rRNA <1..>1374 /product="small subunit ribosomal RNA" BASE COUNT 475 a 210 c 288 g 401 t ORIGIN BASE COUNT 475 a 210 c 288 g 401 t 3839 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- -------~~~ ~~~~~~~~~~ 661 (~~~-)~-~~ ~|~~~~~-~G AUUGAACGCU -G-UCCA-AG |UA-CU--UG ACAC-A-UGC 721 -UAAUCG-AA CGACU|AAUU AGUU------ ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- ---------- ---uuaaua- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- AACUAAGU|A 961 G--UA-GU|G GUGUACAGGU GAGUAA-aaG A|UAA-UUug --GC---UAC CUUAA-AGUA 1021 AGGGG----- -------(aa aa--)----- --------UC CCUUauaa-- ---------- 1081 ---------- ---------- ---------- ---------- -----ac--g aaaggaaaau 1141 aaaag-ucc- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ------GCUU UAAGAUGUU- --AAUCU-UU |a------uc uCGG--GG-- 1321 -AGUAGUAGG AA-AG(GUAA UGA------- ---------- ---------- ------)CUU 1381 UUCUA|---- GCUAAa---A U|CCGUA-GU CG|--UGACU (GAGA--)GG UCGAUCGAC| 1441 CACAUU-GGG UC(UGAAA-- AA-)ACCCCA A|UGCgu--( auua-)---- GUA----C-A 1501 GCA|GUG-AG GAAUAUUGGU C-AAUGGCC( ---------- ----GAAA)G GCUGA-ACC| 1561 A|-GUAA-C- UU-GGA---- -AGAAUGUAA --GUGU-AUU (--------a u--ugu---- 1621 --------)A AUACAAUAAC GAUU|----- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- -(-------- )aacucguau aaaauucuaa 1801 auaggauaau gauaaugaca auuuccuauu ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- -----UAUAA GUCUU|-GAC 1921 -CAAAU---U ACGU-G(-CC AGCAGUC-GC -GGU-AA)-U ACGUAG|--- -AAG-ACU-- 1981 AGUGU-UAGU CAU--CUUUA UUAGGU|UUA AAGGGUACCU -A-GACG|GU AAAUUA--AA 2041 |CUC------ ---------- -------(-- --uaaau)-- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ------GAGu ---------- ---------- 2221 ---------- ---------- ---------- ---------- ------AC|U UUUUUAC-UA 2281 G-----AGUU -Uu-AUgu-g -AGAAG--GA -----|AGAA UUUCUG-GAG ---UAGGG(a 2341 ugaaa)UAC- uuu---GAUA CCAG-AAG-G ACU------- ----GGUAAC -GGC(-GAAG 2401 -)GC|A---- ----UCCUUC U-AUGUAAA- AA---CUGAC GUU--GAGGG ACGAA-GGCU 2461 U-GGG---UA GCAAUAAGG( AUUAGAUAC) CCUA-GUAG| -UCCA-AGC- AGAAAA-UGA 2521 U--GAAU-GU |CA|UAGGCU AGAuuu(aaa a-u------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---)-----U UAGUCUA-UA AAU(GAAA)G UG-UAAGCAU 2701 U-C|--C|AC C-UCAA-GAG UAAUAUG(-- -GCAA--)CA UAU--AAACU GAAAUCAU-U 2761 AG|ACCGUU- UCUGAA---A CCAGUAGU|G AAGUAUGU-U |AUUUAA-UU CG(AUAACCC 2821 G--------- ----)CGAAA A-ACCUUACC ACAGUuugaa uaacaauaaa a--------- 2881 ---------u ug--u----- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------u a--c---AAG CGC-UG|CA- 3121 |CG|-GC--U |G------UC UU-UA|G-UU AAU-|GUC(G --UGA)GAUU U--GG(UUA- 3181 ACU)CCUC-- U-AAUUAACG AAA-ACCCU- ----cacuuu auuug----- -----(aaua 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|-----c auaaagugGU -UCGCCA-C- (UACA-U)-- UGGaccAGAU 3781 A----AUA-G GGAUUA-AGA C-AAGUCAUC A|UGGC|CUA AAU------- ---------A 3841 C-U-GU-GGG CU-AUA--GA -CGUGCCACA UA--CGCCuu a-ACAA-AGG GA--UGCGA- 3901 UAUU<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--G UGA--)AAUG -GAGCUAAUC CCCA--aaau uGG-AUAUAA 4021 ---------- -----UAUGG --AUUGU-AG U-C(------ ---------- ---------- 4081 ---------- ---------- UGUAAc-uc) G-AC-U--AC -A--UGAAU- -AAGGAAUUA 4141 C-U--AGUAA U-CGUGAA(- UCACCAUC-- --)GUCACGG U-GAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -UUU--A-AU 4261 CUCAGC-UA- GGUACUAA-C -CACUCGUCA G-GCG--CUG AAA-GGAgua ugugcaa--- 4321 ---------- ---------- ---------- ---------- ---------< -uaaguuuga 4381 uuugc-uuau guauuaauau auauaa(uca g)guauauaa auauguaagu auuauuuucg 4441 ua-------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 -------ugc augacUUUGA UUGG-UGU-U AAGUCGAAAU AU~~~~~~-~ ~~~-~~(~~~ 4621 -~)~~~-~~- ~~~~~~~~~~ -----~~~-| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS mt.A.par.1 5213 bp RNA RNA 11-JAN-191 DEFINITION Mitochondrion Aspergillus parasiticus. ACCESSION No information KEYWORDS No information. SOURCE Mitochondrion Aspergillus parasiticus. ORGANISM Mitochondrion Aspergillus parasiticus. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: U29213 LOCUS APU29213 1374 bp DNA PLN 02-JAN-1996 DEFINITION Aspergillus parasiticus NRRL 502 mitochondrial ribosomal RNA, small subunit, mitochondrial gene, partial sequence. ACCESSION U29213 NID g1144017 KEYWORDS . SOURCE Aspergillus parasiticus. ORGANISM Mitochondrion Aspergillus parasiticus Eukaryotae; mitochondrial eukaryotes; Eumycota; Ascomycotina; Plectomycetes; Eurotiales; Trichocomaceae; mitosporic Trichocomaceae; Aspergillus. REFERENCE 1 (bases 1 to 1374) AUTHORS Peterson,S.W. TITLE Phylogenetic analysis of Aspergillus based upon rDNA sequence JOURNAL Unpublished REFERENCE 2 (bases 1 to 1374) AUTHORS Peterson,S.W. TITLE Direct Submission JOURNAL Submitted (15-JUN-1995) Stephen W. Peterson, National Center for Agricultural Utilization Research, Microbial Properties Research, 1815 N. University St., Peoria, IL 61604, USA COMMENT NCBI gi: 1144017 FEATURES Location/Qualifiers source 1..1374 /strain="NRRL 502" /organism="Aspergillus parasiticus" /mitochondrion rRNA <1..>1374 /product="small subunit ribosomal RNA" BASE COUNT 475 a 210 c 288 g 401 t ORIGIN BASE COUNT 475 a 210 c 288 g 401 t 3839 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- -------~~~ ~~~~~~~~~~ 661 (~~~-)~-~~ ~|~~~~~-~G AUUGAACGCU -G-UCCA-AG |UA-CU--UG ACAC-A-UGC 721 -UAAUCG-AA CGACU|AAUU AGUU------ ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- ---------- ---uuaaua- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- AACUAAGU|A 961 G--UA-GU|G GUGUACAGGU GAGUAA-aaG A|UAA-UUug --GC---UAC CUUAA-AGUA 1021 AGGGG----- -------(aa aa--)----- --------UC CCUUauaa-- ---------- 1081 ---------- ---------- ---------- ---------- -----ac--g aaaggaaaau 1141 aaaag-ucc- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ------GCUU UAAGAUGUU- --AAUCU-UU |a------uc uCGG--GG-- 1321 -AGUAGUAGG AA-AG(GUAA UGA------- ---------- ---------- ------)CUU 1381 UUCUA|---- GCUAAa---A U|CCGUA-GU CG|--UGACU (GAGA--)GG UCGAUCGAC| 1441 CACAUU-GGG UC(UGAAA-- AA-)ACCCCA A|UGCgu--( auua-)---- GUA----C-A 1501 GCA|GUG-AG GAAUAUUGGU C-AAUGGCC( ---------- ----GAAA)G GCUGA-ACC| 1561 A|-GUAA-C- UU-GGA---- -AGAAUGUAA --GUGU-AUU (--------a u--ugu---- 1621 --------)A AUACAAUAAC GAUU|----- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- -(-------- )aacucguau aaaauucuaa 1801 auaggauaau gauaaugaca auuuccuauu ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- -----UAUAA GUCUU|-GAC 1921 -CAAAU---U ACGU-G(-CC AGCAGUC-GC -GGU-AA)-U ACGUAG|--- -AAG-ACU-- 1981 AGUGU-UAGU CAU--CUUUA UUAGGU|UUA AAGGGUACCU -A-GACG|GU AAAUUA--AA 2041 |CUC------ ---------- -------(-- --uaaau)-- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ------GAGu ---------- ---------- 2221 ---------- ---------- ---------- ---------- ------AC|U UUUUUAC-UA 2281 G-----AGUU -Uu-AUgu-g -AGAAG--GA -----|AGAA UUUCUG-GAG ---UAGGG(a 2341 ugaaa)UAC- uuu---GAUA CCAG-AAG-G ACU------- ----GGUAAC -GGC(-GAAG 2401 -)GC|A---- ----UCCUUC U-AUGUAAA- AA---CUGAC GUU--GAGGG ACGAA-GGCU 2461 U-GGG---UA GCAAUAAGG( AUUAGAUAC) CCUA-GUAG| -UCCA-AGC- AGAAAA-UGA 2521 U--GAAU-GU |CA|UAGGCU AGAuuu(aaa a-u------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---)-----U UAGUCUA-UA AAU(GAAA)G UG-UAAGCAU 2701 U-C|--C|AC C-UCAA-GAG UAAUAUG(-- -GCAA--)CA UAU--AAACU GAAAUCAU-U 2761 AG|ACCGUU- UCUGAA---A CCAGUAGU|G AAGUAUGU-U |AUUUAA-UU CG(AUAACCC 2821 G--------- ----)CGAAA A-ACCUUACC ACAGUuugaa uaacaauaaa a--------- 2881 ---------u ug--u----- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------u a--c---AAG CGC-UG|CA- 3121 |CG|-GC--U |G------UC UU-UA|G-UU AAU-|GUC(G --UGA)GAUU U--GG(UUA- 3181 ACU)CCUC-- U-AAUUAACG AAA-ACCCU- ----cacuuu auuug----- -----(aaua 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|-----c auaaagugGU -UCGCCA-C- (UACA-U)-- UGGaccAGAU 3781 A----AUA-G GGAUUA-AGA C-AAGUCAUC A|UGGC|CUA AAU------- ---------A 3841 C-U-GU-GGG CU-AUA--GA -CGUGCCACA UA--CGCCuu a-ACAA-AGG GA--UGCGA- 3901 UAUU<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--G UGA--)AAUG -GAGCUAAUC CCCA--aaau uGG-AUAUAA 4021 ---------- -----UAUGG --AUUGU-AG U-C(------ ---------- ---------- 4081 ---------- ---------- UGUAAc-uc) G-AC-U--AC -A--UGAAU- -AAGGAAUUA 4141 C-U--AGUAA U-CGUGAA(- UCACCAUC-- --)GUCACGG U-GAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -UUU--A-AU 4261 CUCAGC-UA- GGUACUAA-C -CACUCGUCA G-GCG--CUG AAA-GGAgua ugugcaa--- 4321 ---------- ---------- ---------- ---------- ---------< -uaaguuuga 4381 uuugc-uuau guauuaauau auauaa(uca g)guauauaa auauguaagu auuauuuucg 4441 ua-------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 -------ugc augacUUUGA UUGG-UGU-U AAGUCGAAAU AU~~~~~~-~ ~~~-~~(~~~ 4621 -~)~~~-~~- ~~~~~~~~~~ -----~~~-| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS mt.A.par.2 5213 bp RNA RNA 11-JAN-191 DEFINITION Mitochondrion Aspergillus parasiticus subsp. NRRL 4123. ACCESSION No information KEYWORDS No information. SOURCE Mitochondrion Aspergillus parasiticus subsp. NRRL 4123. ORGANISM Mitochondrion Aspergillus parasiticus. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: U29233 LOCUS APU29233 1374 bp DNA PLN 02-JAN-1996 DEFINITION Aspergillus parasiticus NRRL 4123 mitochondrial ribosomal RNA, small subunit, mitochondrial gene, partial sequence. ACCESSION U29233 NID g1144037 KEYWORDS . SOURCE Aspergillus parasiticus. ORGANISM Mitochondrion Aspergillus parasiticus Eukaryotae; mitochondrial eukaryotes; Eumycota; Ascomycotina; Plectomycetes; Eurotiales; Trichocomaceae; mitosporic Trichocomaceae; Aspergillus. REFERENCE 1 (bases 1 to 1374) AUTHORS Peterson,S.W. TITLE Phylogenetic analysis of Aspergillus based upon rDNA sequence JOURNAL Unpublished REFERENCE 2 (bases 1 to 1374) AUTHORS Peterson,S.W. TITLE Direct Submission JOURNAL Submitted (15-JUN-1995) Stephen W. Peterson, National Center for Agricultural Utilization Research, Microbial Properties Research, 1815 N. University St., Peoria, IL 61604, USA COMMENT NCBI gi: 1144037 FEATURES Location/Qualifiers source 1..1374 /strain="NRRL 4123" /organism="Aspergillus parasiticus" /mitochondrion rRNA <1..>1374 /product="small subunit ribosomal RNA" BASE COUNT 475 a 210 c 288 g 401 t ORIGIN BASE COUNT 475 a 210 c 288 g 401 t 3839 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- -------~~~ ~~~~~~~~~~ 661 (~~~-)~-~~ ~|~~~~~-~G AUUGAACGCU -G-UCCA-AG |UA-CU--UG ACAC-A-UGC 721 -UAAUCG-AA CGACU|AAUU AGUU------ ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- ---------- ---uuaaua- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- AACUAAGU|A 961 G--UA-GU|G GUGUACAGGU GAGUAA-aaG A|UAA-UUug --GC---UAC CUUAA-AGUA 1021 AGGGG----- -------(aa aa--)----- --------UC CCUUauaa-- ---------- 1081 ---------- ---------- ---------- ---------- -----ac--g aaaggaaaau 1141 aaaag-ucc- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ------GCUU UAAGAUGUU- --AAUCU-UU |a------uc uCGG--GG-- 1321 -AGUAGUAGG AA-AG(GUAA UGA------- ---------- ---------- ------)CUU 1381 UUCUA|---- GCUAAa---A U|CCGUA-GU CG|--UGACU (GAGA--)GG UCGAUCGAC| 1441 CACAUU-GGG UC(UGAAA-- AA-)ACCCCA A|UGCgu--( auua-)---- GUA----C-A 1501 GCA|GUG-AG GAAUAUUGGU C-AAUGGCC( ---------- ----GAAA)G GCUGA-ACC| 1561 A|-GUAA-C- UU-GGA---- -AGAAUGUAA --GUGU-AUU (--------a u--ugu---- 1621 --------)A AUACAAUAAC GAUU|----- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- -(-------- )aacucguau aaaauucuaa 1801 auaggauaau gauaaugaca auuuccuauu ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- -----UAUAA GUCUU|-GAC 1921 -CAAAU---U ACGU-G(-CC AGCAGUC-GC -GGU-AA)-U ACGUAG|--- -AAG-ACU-- 1981 AGUGU-UAGU CAU--CUUUA UUAGGU|UUA AAGGGUACCU -A-GACG|GU AAAUUA--AA 2041 |CUC------ ---------- -------(-- --uaaau)-- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ------GAGu ---------- ---------- 2221 ---------- ---------- ---------- ---------- ------AC|U UUUUUAC-UA 2281 G-----AGUU -Uu-AUgu-g -AGAAG--GA -----|AGAA UUUCUG-GAG ---UAGGG(a 2341 ugaaa)UAC- uuu---GAUA CCAG-AAG-G ACU------- ----GGUAAC -GGC(-GAAG 2401 -)GC|A---- ----UCCUUC U-AUGUAAA- AA---CUGAC GUU--GAGGG ACGAA-GGCU 2461 U-GGG---UA GCAAUAAGG( AUUAGAUAC) CCUA-GUAG| -UCCA-AGC- AGAAAA-UGA 2521 U--GAAU-GU |CA|UAGGCU AGAuuu(aaa a-u------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---)-----U UAGUCUA-UA AAU(GAAA)G UG-UAAGCAU 2701 U-C|--C|AC C-UCAA-GAG UAAUAUG(-- -GCAA--)CA UAU--AAACU GAAAUCAU-U 2761 AG|ACCGUU- UCUGAA---A CCAGUAGU|G AAGUAUGU-U |AUUUAA-UU CG(AUAACCC 2821 G--------- ----)CGAAA A-ACCUUACC ACAGUuugaa uaacaauaaa a--------- 2881 ---------u ug--u----- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------u a--c---AAG CGC-UG|CA- 3121 |CG|-GC--U |G------UC UU-UA|G-UU AAU-|GUC(G --UGA)GAUU U--GG(UUA- 3181 ACU)CCUC-- U-AAUUAACG AAA-ACCCU- ----cacuuu auuug----- -----(aaua 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|-----c auaaagugGU -UCGCCA-C- (UACA-U)-- UGGaccAGAU 3781 A----AUA-G GGAUUA-AGA C-AAGUCAUC A|UGGC|CUA AAU------- ---------A 3841 C-U-GU-GGG CU-AUA--GA -CGUGCCACA UA--CGCCuu a-ACAA-AGG GA--UGCGA- 3901 UAUU<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--G UGA--)AAUG -GAGCUAAUC CCCA--aaau uGG-AUAUAA 4021 ---------- -----UAUGG --AUUGU-AG U-C(------ ---------- ---------- 4081 ---------- ---------- UGUAAc-uc) G-AC-U--AC -A--UGAAU- -AAGGAAUUA 4141 C-U--AGUAA U-CGUGAA(- UCACCAUC-- --)GUCACGG U-GAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -UUU--A-AU 4261 CUCAGC-UA- GGUACUAA-C -CACUCGUCA G-GCG--CUG AAA-GGAgua ugugcaa--- 4321 ---------- ---------- ---------- ---------- ---------< -uaaguuuga 4381 uuugc-uuau guauuaauau auauaa(uca g)guauauaa auauguaagu auuauuuucg 4441 ua-------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 -------ugc augacUUUGA UUGG-UGU-U AAGUCGAAAU AU~~~~~~-~ ~~~-~~(~~~ 4621 -~)~~~-~~- ~~~~~~~~~~ -----~~~-| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS mt.A.par.3 5213 bp RNA RNA 11-JAN-191 DEFINITION Mitochondrion Asptergillus parasiticus. ACCESSION No information KEYWORDS No information. SOURCE Mitochondrion Asptergillus parasiticus. ORGANISM Mitochondrion Asptergillus parasiticus. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: U29223 LOCUS APU29223 1374 bp DNA PLN 02-JAN-1996 DEFINITION Aspergillus parasiticus NRRL 6433 mitochondrial ribosomal RNA, small subunit, mitochondrial gene, partial sequence. ACCESSION U29223 NID g1144027 KEYWORDS . SOURCE Aspergillus parasiticus. ORGANISM Mitochondrion Aspergillus parasiticus Eukaryotae; mitochondrial eukaryotes; Eumycota; Ascomycotina; Plectomycetes; Eurotiales; Trichocomaceae; mitosporic Trichocomaceae; Aspergillus. REFERENCE 1 (bases 1 to 1374) AUTHORS Peterson,S.W. TITLE Phylogenetic analysis of Aspergillus based upon rDNA sequence JOURNAL Unpublished REFERENCE 2 (bases 1 to 1374) AUTHORS Peterson,S.W. TITLE Direct Submission JOURNAL Submitted (15-JUN-1995) Stephen W. Peterson, National Center for Agricultural Utilization Research, Microbial Properties Research, 1815 N. University St., Peoria, IL 61604, USA COMMENT NCBI gi: 1144027 FEATURES Location/Qualifiers source 1..1374 /strain="NRRL 6433" /organism="Aspergillus parasiticus" /mitochondrion rRNA <1..>1374 /product="small subunit ribosomal RNA" BASE COUNT 475 a 210 c 288 g 401 t ORIGIN BASE COUNT 475 a 210 c 288 g 401 t 3839 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- -------~~~ ~~~~~~~~~~ 661 (~~~-)~-~~ ~|~~~~~-~G AUUGAACGCU -G-UCCA-AG |UA-CU--UG ACAC-A-UGC 721 -UAAUCG-AA CGACU|AAUU AGUU------ ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- ---------- ---uuaaua- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- AACUAAGU|A 961 G--UA-GU|G GUGUACAGGU GAGUAA-aaG A|UAA-UUug --GC---UAC CUUAA-AGUA 1021 AGGGG----- -------(aa aa--)----- --------UC CCUUauaa-- ---------- 1081 ---------- ---------- ---------- ---------- -----ac--g aaaggaaaau 1141 aaaag-ucc- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ------GCUU UAAGAUGUU- --AAUCU-UU |a------uc uCGG--GG-- 1321 -AGUAGUAGG AA-AG(GUAA UGA------- ---------- ---------- ------)CUU 1381 UUCUA|---- GCUAAa---A U|CCGUA-GU CG|--UGACU (GAGA--)GG UCGAUCGAC| 1441 CACAUU-GGG UC(UGAAA-- AA-)ACCCCA A|UGCgu--( auua-)---- GUA----C-A 1501 GCA|GUG-AG GAAUAUUGGU C-AAUGGCC( ---------- ----GAAA)G GCUGA-ACC| 1561 A|-GUAA-C- UU-GGA---- -AGAAUGUAA --GUGU-AUU (--------a u--ugu---- 1621 --------)A AUACAAUAAC GAUU|----- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- -(-------- )aacucguau aaaauucuaa 1801 auaggauaau gauaaugaca auuuccuauu ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- -----UAUAA GUCUU|-GAC 1921 -CAAAU---U ACGU-G(-CC AGCAGUC-GC -GGU-AA)-U ACGUAG|--- -AAG-ACU-- 1981 AGUGU-UAGU CAU--CUUUA UUAGGU|UUA AAGGGUACCU -A-GACG|GU AAAUUA--AA 2041 |CUC------ ---------- -------(-- --uaaau)-- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ------GAGu ---------- ---------- 2221 ---------- ---------- ---------- ---------- ------AC|U UUUUUAC-UA 2281 G-----AGUU -Uu-AUgu-g -AGAAG--GA -----|AGAA UUUCUG-GAG ---UAGGG(a 2341 ugaaa)UAC- uuu---GAUA CCAG-AAG-G ACU------- ----GGUAAC -GGC(-GAAG 2401 -)GC|A---- ----UCCUUC U-AUGUAAA- AA---CUGAC GUU--GAGGG ACGAA-GGCU 2461 U-GGG---UA GCAAUAAGG( AUUAGAUAC) CCUA-GUAG| -UCCA-AGC- AGAAAA-UGA 2521 U--GAAU-GU |CA|UAGGCU AGAuuu(aaa a-u------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---)-----U UAGUCUA-UA AAU(GAAA)G UG-UAAGCAU 2701 U-C|--C|AC C-UCAA-GAG UAAUAUG(-- -GCAA--)CA UAU--AAACU GAAAUCAU-U 2761 AG|ACCGUU- UCUGAA---A CCAGUAGU|G AAGUAUGU-U |AUUUAA-UU CG(AUAACCC 2821 G--------- ----)CGAAA A-ACCUUACC ACAGUuugaa uaacaauaaa a--------- 2881 ---------u ug--u----- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------u a--c---AAG CGC-UG|CA- 3121 |CG|-GC--U |G------UC UU-UA|G-UU AAU-|GUC(G --UGA)GAUU U--GG(UUA- 3181 ACU)CCUC-- U-AAUUAACG AAA-ACCCU- ----cacuuu auuug----- -----(aaua 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|-----c auaaagugGU -UCGCCA-C- (UACA-U)-- UGGaccAGAU 3781 A----AUA-G GGAUUA-AGA C-AAGUCAUC A|UGGC|CUA AAU------- ---------A 3841 C-U-GU-GGG CU-AUA--GA -CGUGCCACA UA--CGCCuu a-ACAA-AGG GA--UGCGA- 3901 UAUU<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--G UGA--)AAUG -GAGCUAAUC CCCA--aaau uGG-AUAUAA 4021 ---------- -----UAUGG --AUUGU-AG U-C(------ ---------- ---------- 4081 ---------- ---------- UGUAAc-uc) G-AC-U--AC -A--UGAAU- -AAGGAAUUA 4141 C-U--AGUAA U-CGUGAA(- UCACCAUC-- --)GUCACGG U-GAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -UUU--A-AU 4261 CUCAGC-UA- GGUACUAA-C -CACUCGUCA G-GCG--CUG AAA-GGAgua ugugcaa--- 4321 ---------- ---------- ---------- ---------- ---------< -uaaguuuga 4381 uuugc-uuau guauuaauau auauaa(uca g)guauauaa auauguaagu auuauuuucg 4441 ua-------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 -------ugc augacUUUGA UUGG-UGU-U AAGUCGAAAU AU~~~~~~-~ ~~~-~~(~~~ 4621 -~)~~~-~~- ~~~~~~~~~~ -----~~~-| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS mt.A.sojae 5213 bp RNA RNA 11-JAN-191 DEFINITION Mitochondrion Aspergillus sojae. ACCESSION No information KEYWORDS No information. SOURCE Mitochondrion Aspergillus sojae. ORGANISM Mitochondrion Aspergillus sojae. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: U29216 LOCUS ASU29216 1374 bp DNA PLN 02-JAN-1996 DEFINITION Aspergillus sojae NRRL 1988 mitochondrial ribosomal RNA, small subunit, mitochondrial gene, partial sequence. ACCESSION U29216 NID g1144020 KEYWORDS . SOURCE Aspergillus sojae. ORGANISM Mitochondrion Aspergillus sojae Eukaryotae; mitochondrial eukaryotes; Eumycota; Ascomycotina; Plectomycetes; Eurotiales; Trichocomaceae; mitosporic Trichocomaceae; Aspergillus. REFERENCE 1 (bases 1 to 1374) AUTHORS Peterson,S.W. TITLE Phylogenetic analysis of Aspergillus based upon rDNA sequence JOURNAL Unpublished REFERENCE 2 (bases 1 to 1374) AUTHORS Peterson,S.W. TITLE Direct Submission JOURNAL Submitted (15-JUN-1995) Stephen W. Peterson, National Center for Agricultural Utilization Research, Microbial Properties Research, 1815 N. University St., Peoria, IL 61604, USA COMMENT NCBI gi: 1144020 FEATURES Location/Qualifiers source 1..1374 /strain="NRRL 1988" /organism="Aspergillus sojae" /mitochondrion rRNA <1..>1374 /product="small subunit ribosomal RNA" BASE COUNT 475 a 210 c 288 g 401 t ORIGIN BASE COUNT 475 a 210 c 288 g 401 t 3839 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- -------~~~ ~~~~~~~~~~ 661 (~~~-)~-~~ ~|~~~~~-~G AUUGAACGCU -G-UCCA-AG |UA-CU--UG ACAC-A-UGC 721 -UAAUCG-AA CGACU|AAUU AGUU------ ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- ---------- ---uuaaua- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- AACUAAGU|A 961 G--UA-GU|G GUGUACAGGU GAGUAA-aaG A|UAA-UUug --GC---UAC CUUAA-AGUA 1021 AGGGG----- -------(aa aa--)----- --------UC CCUUauaa-- ---------- 1081 ---------- ---------- ---------- ---------- -----ac--g aaaggaaaau 1141 aaaag-ucc- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ------GCUU UAAGAUGUU- --AAUCU-UU |a------uc uCGG--GG-- 1321 -AGUAGUAGG AA-AG(GUAA UGA------- ---------- ---------- ------)CUU 1381 UUCUA|---- GCUAAa---A U|CCGUA-GU CG|--UGACU (GAGA--)GG UCGAUCGAC| 1441 CACAUU-GGG UC(UGAAA-- AA-)ACCCCA A|UGCgu--( auua-)---- GUA----C-A 1501 GCA|GUG-AG GAAUAUUGGU C-AAUGGCC( ---------- ----GAAA)G GCUGA-ACC| 1561 A|-GUAA-C- UU-GGA---- -AGAAUGUAA --GUGU-AUU (--------a u--ugu---- 1621 --------)A AUACAAUAAC GAUU|----- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- -(-------- )aacucguau aaaauucuaa 1801 auaggauaau gauaaugaca auuuccuauu ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- -----UAUAA GUCUU|-GAC 1921 -CAAAU---U ACGU-G(-CC AGCAGUC-GC -GGU-AA)-U ACGUAG|--- -AAG-ACU-- 1981 AGUGU-UAGU CAU--CUUUA UUAGGU|UUA AAGGGUACCU -A-GACG|GU AAAUUA--AA 2041 |CUC------ ---------- -------(-- --uaaau)-- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ------GAGu ---------- ---------- 2221 ---------- ---------- ---------- ---------- ------AC|U UUUUUAC-UA 2281 G-----AGUU -Uu-AUgu-g -AGAAG--GA -----|AGAA UUUCUG-GAG ---UAGGG(a 2341 ugaaa)UAC- uuu---GAUA CCAG-AAG-G ACU------- ----GGUAAC -GGC(-GAAG 2401 -)GC|A---- ----UCCUUC U-AUGUAAA- AA---CUGAC GUU--GAGGG ACGAA-GGCU 2461 U-GGG---UA GCAAUAAGG( AUUAGAUAC) CCUA-GUAG| -UCCA-AGC- AGAAAA-UGA 2521 U--GAAU-GU |CA|UAGGCU AGAuuu(aaa a-u------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---)-----U UAGUCUA-UA AAU(GAAA)G UG-UAAGCAU 2701 U-C|--C|AC C-UCAA-GAG UAAUAUG(-- -GCAA--)CA UAU--AAACU GAAAUCAU-U 2761 AG|ACCGUU- UCUGAA---A CCAGUAGU|G AAGUAUGU-U |AUUUAA-UU CG(AUAACCC 2821 G--------- ----)CGAAA A-ACCUUACC ACAGUuugaa uaacaauaaa a--------- 2881 ---------u ug--u----- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------u a--c---AAG CGC-UG|CA- 3121 |CG|-GC--U |G------UC UU-UA|G-UU AAU-|GUC(G --UGA)GAUU U--GG(UUA- 3181 ACU)CCUC-- U-AAUUAACG AAA-ACCCU- ----cacuuu auuug----- -----(aaua 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|-----c auaaagugGU -UCGCCA-C- (UACA-U)-- UGGaccAGAU 3781 A----AUA-G GGAUUA-AGA C-AAGUCAUC A|UGGC|CUA AAU------- ---------A 3841 C-U-GU-GGG CU-AUA--GA -CGUGCCACA UA--CGCCuu a-ACAA-AGG GA--UGCGA- 3901 UAUU<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--G UGA--)AAUG -GAGCUAAUC CCCA--aaau uGG-AUAUAA 4021 ---------- -----UAUGG --AUUGU-AG U-C(------ ---------- ---------- 4081 ---------- ---------- UGUAAc-uc) G-AC-U--AC -A--UGAAU- -AAGGAAUUA 4141 C-U--AGUAA U-CGUGAA(- UCACCAUC-- --)GUCACGG U-GAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -UUU--A-AU 4261 CUCAGC-UA- GGUACUAA-C -CACUCGUCA G-GCG--CUG AAA-GGAgua ugugcaa--- 4321 ---------- ---------- ---------- ---------- ---------< -uaaguuuga 4381 uuugc-uuau guauuaauau auauaa(uca g)guauauaa auauguaagu auuauuuucg 4441 ua-------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 -------ugc augacUUUGA UUGG-UGU-U AAGUCGAAAU AU~~~~~~-~ ~~~-~~(~~~ 4621 -~)~~~-~~- ~~~~~~~~~~ -----~~~-| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS mt.A.subol 5213 bp RNA RNA 11-JAN-191 DEFINITION Mitochondrion Aspergillus subolivaceus. ACCESSION No information KEYWORDS No information. SOURCE Mitochondrion Aspergillus subolivaceus. ORGANISM Mitochondrion Aspergillus subolivaceus. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: U29222 LOCUS ASU29222 1374 bp DNA PLN 02-JAN-1996 DEFINITION Aspergillus subolivaceus NRRL 4998 mitochondrial ribosomal RNA, small subunit, mitochondrial gene, partial sequence. ACCESSION U29222 NID g1144026 KEYWORDS . SOURCE Aspergillus subolivaceus. ORGANISM Mitochondrion Aspergillus subolivaceus Eukaryotae; mitochondrial eukaryotes; Eumycota; Ascomycotina; Plectomycetes; Eurotiales; Trichocomaceae; mitosporic Trichocomaceae; Aspergillus. REFERENCE 1 (bases 1 to 1374) AUTHORS Peterson,S.W. TITLE Phylogenetic analysis of Aspergillus based upon rDNA sequence JOURNAL Unpublished REFERENCE 2 (bases 1 to 1374) AUTHORS Peterson,S.W. TITLE Direct Submission JOURNAL Submitted (15-JUN-1995) Stephen W. Peterson, National Center for Agricultural Utilization Research, Microbial Properties Research, 1815 N. University St., Peoria, IL 61604, USA COMMENT NCBI gi: 1144026 FEATURES Location/Qualifiers source 1..1374 /strain="NRRL 4998" /organism="Aspergillus subolivaceus" /mitochondrion rRNA <1..>1374 /product="small subunit ribosomal RNA" BASE COUNT 475 a 210 c 288 g 401 t ORIGIN BASE COUNT 475 a 210 c 288 g 401 t 3839 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- -------~~~ ~~~~~~~~~~ 661 (~~~-)~-~~ ~|~~~~~-~G AUUGAACGCU -G-UCCA-AG |UA-CU--UG ACAC-A-UGC 721 -UAAUCG-AA CGACU|AAUU AGUU------ ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- ---------- ---uuaaua- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- AACUAAGU|A 961 G--UA-GU|G GUGUACAGGU GAGUAA-aaG A|UAA-UUug --GC---UAC CUUAA-AGUA 1021 AGGGG----- -------(aa aa--)----- --------UC CCUUauaa-- ---------- 1081 ---------- ---------- ---------- ---------- -----ac--g aaaggaaaau 1141 aaaag-ucc- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ------GCUU UAAGAUGUU- --AAUCU-UU |a------uc uCGG--GG-- 1321 -AGUAGUAGG AA-AG(GUAA UGA------- ---------- ---------- ------)CUU 1381 UUCUA|---- GCUAAa---A U|CCGUA-GU CG|--UGACU (GAGA--)GG UCGAUCGAC| 1441 CACAUU-GGG UC(UGAAA-- AA-)ACCCCA A|UGCgu--( auua-)---- GUA----C-A 1501 GCA|GUG-AG GAAUAUUGGU C-AAUGGCC( ---------- ----GAAA)G GCUGA-ACC| 1561 A|-GUAA-C- UU-GGA---- -AGAAUGUAA --GUGU-AUU (--------a u--ugu---- 1621 --------)A AUACAAUAAC GAUU|----- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- -(-------- )aacucguau aaaauucuaa 1801 auaggauaau gauaaugaca auuuccuauu ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- -----UAUAA GUCUU|-GAC 1921 -CAAAU---U ACGU-G(-CC AGCAGUC-GC -GGU-AA)-U ACGUAG|--- -AAG-ACU-- 1981 AGUGU-UAGU CAU--CUUUA UUAGGU|UUA AAGGGUACCU -A-GACG|GU AAAUUA--AA 2041 |CUC------ ---------- -------(-- --uaaau)-- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ------GAGu ---------- ---------- 2221 ---------- ---------- ---------- ---------- ------AC|U UUUUUAC-UA 2281 G-----AGUU -Uu-AUgu-g -AGAAG--GA -----|AGAA UUUCUG-GAG ---UAGGG(a 2341 ugaaa)UAC- uuu---GAUA CCAG-AAG-G ACU------- ----GGUAAC -GGC(-GAAG 2401 -)GC|A---- ----UCCUUC U-AUGUAAA- AA---CUGAC GUU--GAGGG ACGAA-GGCU 2461 U-GGG---UA GCAAUAAGG( AUUAGAUAC) CCUA-GUAG| -UCCA-AGC- AGAAAA-UGA 2521 U--GAAU-GU |CA|UAGGCU AGAuuu(aaa a-u------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---)-----U UAGUCUA-UA AAU(GAAA)G UG-UAAGCAU 2701 U-C|--C|AC C-UCAA-GAG UAAUAUG(-- -GCAA--)CA UAU--AAACU GAAAUCAU-U 2761 AG|ACCGUU- UCUGAA---A CCAGUAGU|G AAGUAUGU-U |AUUUAA-UU CG(AUAACCC 2821 G--------- ----)CGAAA A-ACCUUACC ACAGUuugaa uaacaauaaa a--------- 2881 ---------u ug--u----- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------u a--c---AAG CGC-UG|CA- 3121 |CG|-GC--U |G------UC UU-UA|G-UU AAU-|GUC(G --UGA)GAUU U--GG(UUA- 3181 ACU)CCUC-- U-AAUUAACG AAA-ACCCU- ----cacuuu auuug----- -----(aaua 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|-----c auaaagugGU -UCGCCA-C- (UACA-U)-- UGGaccAGAU 3781 A----AUA-G GGAUUA-AGA C-AAGUCAUC A|UGGC|CUA AAU------- ---------A 3841 C-U-GU-GGG CU-AUA--GA -CGUGCCACA UA--CGCCuu a-ACAA-AGG GA--UGCGA- 3901 UAUU<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--G UGA--)AAUG -GAGCUAAUC CCCA--aaau uGG-AUAUAA 4021 ---------- -----UAUGG --AUUGU-AG U-C(------ ---------- ---------- 4081 ---------- ---------- UGUAAc-uc) G-AC-U--AC -A--UGAAU- -AAGGAAUUA 4141 C-U--AGUAA U-CGUGAA(- UCACCAUC-- --)GUCACGG U-GAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -UUU--A-AU 4261 CUCAGC-UA- GGUACUAA-C -CACUCGUCA G-GCG--CUG AAA-GGAgua ugugcaa--- 4321 ---------- ---------- ---------- ---------- ---------< -uaaguuuga 4381 uuugc-uuau guauuaauau auauaa(uca g)guauauaa auauguaagu auuauuuucg 4441 ua-------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 -------ugc augacUUUGA UUGG-UGU-U AAGUCGAAAU AU~~~~~~-~ ~~~-~~(~~~ 4621 -~)~~~-~~- ~~~~~~~~~~ -----~~~-| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS mt.A.tamar 5213 bp RNA RNA 11-JAN-191 DEFINITION Mitochondrion Aspergillus tamarii. ACCESSION No information KEYWORDS No information. SOURCE Mitochondrion Aspergillus tamarii. ORGANISM Mitochondrion Aspergillus tamarii. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: U29224 LOCUS APU29224 1374 bp DNA PLN 02-JAN-1996 DEFINITION Aspergillus tamarii NRRL 20818 mitochondrial ribosomal RNA, small subunit, mitochondrial gene, partial sequence. ACCESSION U29224 NID g1144028 KEYWORDS . SOURCE Aspergillus tamarii. ORGANISM Mitochondrion Aspergillus tamarii Eukaryotae; mitochondrial eukaryotes; Eumycota; Ascomycotina; Plectomycetes; Eurotiales; Trichocomaceae; mitosporic Trichocomaceae; Aspergillus. REFERENCE 1 (bases 1 to 1374) AUTHORS Peterson,S.W. TITLE Phylogenetic analysis of Aspergillus based upon rDNA sequence JOURNAL Unpublished REFERENCE 2 (bases 1 to 1374) AUTHORS Peterson,S.W. TITLE Direct Submission JOURNAL Submitted (15-JUN-1995) Stephen W. Peterson, National Center for Agricultural Utilization Research, Microbial Properties Research, 1815 N. University St., Peoria, IL 61604, USA COMMENT NCBI gi: 1144028 FEATURES Location/Qualifiers source 1..1374 /strain="NRRL 20818" /organism="Aspergillus tamarii" /mitochondrion rRNA <1..>1374 /product="small subunit ribosomal RNA" BASE COUNT 474 a 211 c 287 g 402 t ORIGIN BASE COUNT 474 a 211 c 287 g 402 t 3839 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- -------~~~ ~~~~~~~~~~ 661 (~~~-)~-~~ ~|~~~~~-~G AUUGAACGCU -G-UCCA-AG |UA-CU--UG ACAC-A-UGC 721 -UAAUCG-AA CGACU|AAUU AGUUu----- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- ---------- ---uuaca-- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- AACUAAGU|A 961 G--UA-GU|G GUGUACAGGU GAGUAA-aaG A|UAA-UUug --GC---UAC CUUAA-AGUA 1021 AGGGG----- -------(aa aa--)----- --------UC CCUUauaa-- ---------- 1081 ---------- ---------- ---------- ---------- -----ac--g aaaggaaaau 1141 aaaag-ucc- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ------GCUU UAAGAUGUU- --AAUCU-UU |a------uc uCGG--GG-- 1321 -AGUAGUAGG AA-AG(GUAA UGA------- ---------- ---------- ------)CUU 1381 UUCUA|---- GCUAAa---A U|CCGUA-GU CG|--UGACU (GAGA--)GG UCGAUCGAC| 1441 CACAUU-GGG UC(UGAAA-- AA-)ACCCCA A|UGCgu--( auua-)---- GUA----C-A 1501 GCA|GUG-AG GAAUAUUGGU C-AAUGGCC( ---------- ----GAAA)G GCUGA-ACC| 1561 A|-GUAA-C- UU-GGA---- -AGAAUGUAA --GUGU-AUU (--------a u--ugu---- 1621 --------)A AUACAAUAAC GAUU|----- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- -(-------- )aacucguau aaaauucuaa 1801 auaggauaau gauaaugaca auuuccuauu ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- -----UAUAA GUCUU|-GAC 1921 -CAAAU---U ACGU-G(-CC AGCAGUC-GC -GGU-AA)-U ACGUAG|--- -AAG-ACU-- 1981 AGUGU-UAGU CAU--CUUUA UUAGGU|UUA AAGGGUACCU -A-GACG|GU AAAUUA--AA 2041 |CUC------ ---------- -------(-- --uaaau)-- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ------GAGu ---------- ---------- 2221 ---------- ---------- ---------- ---------- ------AC|U UUUUUAC-UA 2281 G-----AGUU -Uu-AUgu-g -AGAAG--GA -----|AGAA UUUCUG-GAG ---UAGGG(a 2341 ugaaa)UAC- uuu---GAUA CCAG-AAG-G ACU------- ----GGUAAC -GGC(-GAAG 2401 -)GC|A---- ----UCCUUC U-AUGUAAA- AA---CUGAC GUU--GAGGG ACGAA-GGCU 2461 U-GGG---UA GCAAUAAGG( AUUAGAUAC) CCUA-GUAG| -UCCA-AGC- AGAAAA-UGA 2521 U--GAAU-GU |CA|UAGGCU AGAuuu(aaa a-u------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---)-----U UAGUCUA-UA AAU(GAAA)G UG-UAAGCAU 2701 U-C|--C|AC C-UCAA-GAG UAAUAUG(-- -GCAA--)CA UAU--AAACU GAAAUCAU-U 2761 AG|ACCGUU- UCUGAA---A CCAGUAGU|G AAGUAUGU-U |AUUUAA-UU CG(AUAACCC 2821 G--------- ----)CGAAA A-ACCUUACC ACAGUuugaa uaacaauaaa a--------- 2881 ---------u ug--u----- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------u a--c---AAG CGC-UG|CA- 3121 |CG|-GC--U |G------UC UU-UA|G-UU AAU-|GUC(G --UGA)GAUU U--GG(UUA- 3181 ACU)CCUC-- U-AAUUAACG AAA-ACCCU- ----cacuuu auuug----- -----(aaua 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|-----c auaaagugGU -UCGCCA-C- (UACA-U)-- UGGaccAGAU 3781 A----AUA-G GGAUUA-AGA C-AAGUCAUC A|UGGC|CUA AAU------- ---------A 3841 C-U-GU-GGG CU-AUA--GA -CGUGCCACA UA--CGCCuu a-ACAA-AGG GA--UGCUA- 3901 UAUU<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--G UGA--)AAUG -GAGCUAAUC CCCA--aaau uGG-AUAUAA 4021 ---------- -----UAUGG --AUUGU-AG U-C(------ ---------- ---------- 4081 ---------- ---------- UGUAAc-uc) G-AC-U--AC -A--UGAAU- -AAGGAAUUA 4141 C-U--AGUAA U-CGUGAA(- UCACCAUC-- --)GUCACGG U-GAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -UUU--A-AU 4261 CUCAGC-UA- GGUACUAA-C -CACUCGUCA G-GCG--CUG AAA-GGAgua ugugcaa--- 4321 ---------- ---------- ---------- ---------- ---------< -uaaguuuga 4381 uuugc-uuau guauuaauau auauaa(uca g)guauauaa auauguaagu auuauuuucg 4441 ua-------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 -------ugc augacUUUGA UUGG-UGU-U AAGUCGAAAU AU~~~~~~-~ ~~~-~~(~~~ 4621 -~)~~~-~~- ~~~~~~~~~~ -----~~~-| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS mt.A.terri 5213 bp RNA RNA 11-JAN-191 DEFINITION Mitochondrion Aspergillus terricola. ACCESSION No information KEYWORDS No information. SOURCE Mitochondrion Aspergillus terricola. ORGANISM Mitochondrion Aspergillus terricola. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: U29212 LOCUS ATU29212 1374 bp DNA PLN 02-JAN-1996 DEFINITION Aspergillus terricola NRRL 426 mitochondrial ribosomal RNA, small subunit, mitochondrial gene, partial sequence. ACCESSION U29212 NID g1144016 KEYWORDS . SOURCE Aspergillus terricola. ORGANISM Mitochondrion Aspergillus terricola Eukaryotae; mitochondrial eukaryotes; Eumycota; Ascomycotina; Plectomycetes; Eurotiales; Trichocomaceae; mitosporic Trichocomaceae; Aspergillus. REFERENCE 1 (bases 1 to 1374) AUTHORS Peterson,S.W. TITLE Phylogenetic analysis of Aspergillus based upon rDNA sequence JOURNAL Unpublished REFERENCE 2 (bases 1 to 1374) AUTHORS Peterson,S.W. TITLE Direct Submission JOURNAL Submitted (15-JUN-1995) Stephen W. Peterson, National Center for Agricultural Utilization Research, Microbial Properties Research, 1815 N. University St., Peoria, IL 61604, USA COMMENT NCBI gi: 1144016 FEATURES Location/Qualifiers source 1..1374 /strain="NRRL 426" /organism="Aspergillus terricola" /mitochondrion rRNA <1..>1374 /product="small subunit ribosomal RNA" BASE COUNT 474 a 211 c 287 g 402 t ORIGIN BASE COUNT 474 a 211 c 287 g 402 t 3839 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- -------~~~ ~~~~~~~~~~ 661 (~~~-)~-~~ ~|~~~~~-~G AUUGAACGCU -G-UCCA-AG |UA-CU--UG ACAC-A-UGC 721 -UAAUCG-AA CGACU|AAUU AGUUu----- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- ---------- ---uuaca-- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- AACUAAGU|A 961 G--UA-GU|G GUGUACAGGU GAGUAA-aaG A|UAA-UUug --GC---UAC CUUAA-AGUA 1021 AGGGG----- -------(aa aa--)----- --------UC CCUUauaa-- ---------- 1081 ---------- ---------- ---------- ---------- -----ac--g aaaggaaaau 1141 aaaag-ucc- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ------GCUU UAAGAUGUU- --AAUCU-UU |a------uc uCGG--GG-- 1321 -AGUAGUAGG AA-AG(GUAA UGA------- ---------- ---------- ------)CUU 1381 UUCUA|---- GCUAAa---A U|CCGUA-GU CG|--UGACU (GAGA--)GG UCGAUCGAC| 1441 CACAUU-GGG UC(UGAAA-- AA-)ACCCCA A|UGCgu--( auua-)---- GUA----C-A 1501 GCA|GUG-AG GAAUAUUGGU C-AAUGGCC( ---------- ----GAAA)G GCUGA-ACC| 1561 A|-GUAA-C- UU-GGA---- -AGAAUGUAA --GUGU-AUU (--------a u--ugu---- 1621 --------)A AUACAAUAAC GAUU|----- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- -(-------- )aacucguau aaaauucuaa 1801 auaggauaau gauaaugaca auuuccuauu ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- -----UAUAA GUCUU|-GAC 1921 -CAAAU---U ACGU-G(-CC AGCAGUC-GC -GGU-AA)-U ACGUAG|--- -AAG-ACU-- 1981 AGUGU-UAGU CAU--CUUUA UUAGGU|UUA AAGGGUACCU -A-GACG|GU AAAUUA--AA 2041 |CUC------ ---------- -------(-- --uaaau)-- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ------GAGu ---------- ---------- 2221 ---------- ---------- ---------- ---------- ------AC|U UUUUUAC-UA 2281 G-----AGUU -Uu-AUgu-g -AGAAG--GA -----|AGAA UUUCUG-GAG ---UAGGG(a 2341 ugaaa)UAC- uuu---GAUA CCAG-AAG-G ACU------- ----GGUAAC -GGC(-GAAG 2401 -)GC|A---- ----UCCUUC U-AUGUAAA- AA---CUGAC GUU--GAGGG ACGAA-GGCU 2461 U-GGG---UA GCAAUAAGG( AUUAGAUAC) CCUA-GUAG| -UCCA-AGC- AGAAAA-UGA 2521 U--GAAU-GU |CA|UAGGCU AGAuuu(aaa a-u------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---)-----U UAGUCUA-UA AAU(GAAA)G UG-UAAGCAU 2701 U-C|--C|AC C-UCAA-GAG UAAUAUG(-- -GCAA--)CA UAU--AAACU GAAAUCAU-U 2761 AG|ACCGUU- UCUGAA---A CCAGUAGU|G AAGUAUGU-U |AUUUAA-UU CG(AUAACCC 2821 G--------- ----)CGAAA A-ACCUUACC ACAGUuugaa uaacaauaaa a--------- 2881 ---------u ug--u----- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------u a--c---AAG CGC-UG|CA- 3121 |CG|-GC--U |G------UC UU-UA|G-UU AAU-|GUC(G --UGA)GAUU U--GG(UUA- 3181 ACU)CCUC-- U-AAUUAACG AAA-ACCCU- ----cacuuu auuug----- -----(aaua 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|-----c auaaagugGU -UCGCCA-C- (UACA-U)-- UGGaccAGAU 3781 A----AUA-G GGAUUA-AGA C-AAGUCAUC A|UGGC|CUA AAU------- ---------A 3841 C-U-GU-GGG CU-AUA--GA -CGUGCCACA UA--CGCCuu a-ACAA-AGG GA--UGCUA- 3901 UAUU<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--G UGA--)AAUG -GAGCUAAUC CCCA--aaau uGG-AUAUAA 4021 ---------- -----UAUGG --AUUGU-AG U-C(------ ---------- ---------- 4081 ---------- ---------- UGUAAc-uc) G-AC-U--AC -A--UGAAU- -AAGGAAUUA 4141 C-U--AGUAA U-CGUGAA(- UCACCAUC-- --)GUCACGG U-GAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -UUU--A-AU 4261 CUCAGC-UA- GGUACUAA-C -CACUCGUCA G-GCG--CUG AAA-GGAgua ugugcaa--- 4321 ---------- ---------- ---------- ---------- ---------< -uaaguuuga 4381 uuugc-uuau guauuaauau auauaa(uca g)guauauaa auauguaagu auuauuuucg 4441 ua-------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 -------ugc augacUUUGA UUGG-UGU-U AAGUCGAAAU AU~~~~~~-~ ~~~-~~(~~~ 4621 -~)~~~-~~- ~~~~~~~~~~ -----~~~-| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS mt.A.thomi 5213 bp RNA RNA 11-JAN-191 DEFINITION Mitochondrion Aspergillus thomii. ACCESSION No information KEYWORDS No information. SOURCE Mitochondrion Aspergillus thomii. ORGANISM Mitochondrion Aspergillus thomii. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: U29217 LOCUS ATU29217 1374 bp DNA PLN 02-JAN-1996 DEFINITION Aspergillus thomii NRRL 2097 mitochondrial ribosomal RNA, small subunit, mitochondrial gene, partial sequence. ACCESSION U29217 NID g1144021 KEYWORDS . SOURCE Aspergillus thomii. ORGANISM Mitochondrion Aspergillus thomii Eukaryotae; mitochondrial eukaryotes; Eumycota; Ascomycotina; Plectomycetes; Eurotiales; Trichocomaceae; mitosporic Trichocomaceae; Aspergillus. REFERENCE 1 (bases 1 to 1374) AUTHORS Peterson,S.W. TITLE Phylogenetic analysis of Aspergillus based upon rDNA sequence JOURNAL Unpublished REFERENCE 2 (bases 1 to 1374) AUTHORS Peterson,S.W. TITLE Direct Submission JOURNAL Submitted (15-JUN-1995) Stephen W. Peterson, National Center for Agricultural Utilization Research, Microbial Properties Research, 1815 N. University St., Peoria, IL 61604, USA COMMENT NCBI gi: 1144021 FEATURES Location/Qualifiers source 1..1374 /strain="NRRL 2097" /organism="Aspergillus thomii" /mitochondrion rRNA <1..>1374 /product="small subunit ribosomal RNA" BASE COUNT 475 a 210 c 288 g 401 t ORIGIN BASE COUNT 475 a 210 c 288 g 401 t 3839 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- -------~~~ ~~~~~~~~~~ 661 (~~~-)~-~~ ~|~~~~~-~G AUUGAACGCU -G-UCCA-AG |UA-CU--UG ACAC-A-UGC 721 -UAAUCG-AA CGACU|AAUU AGUU------ ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- ---------- ---uuaaua- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- AACUAAGU|A 961 G--UA-GU|G GUGUACAGGU GAGUAA-aaG A|UAA-UUug --GC---UAC CUUAA-AGUA 1021 AGGGG----- -------(aa aa--)----- --------UC CCUUauaa-- ---------- 1081 ---------- ---------- ---------- ---------- -----ac--g aaaggaaaau 1141 aaaag-ucc- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ------GCUU UAAGAUGUU- --AAUCU-UU |a------uc uCGG--GG-- 1321 -AGUAGUAGG AA-AG(GUAA UGA------- ---------- ---------- ------)CUU 1381 UUCUA|---- GCUAAa---A U|CCGUA-GU CG|--UGACU (GAGA--)GG UCGAUCGAC| 1441 CACAUU-GGG UC(UGAAA-- AA-)ACCCCA A|UGCgu--( auua-)---- GUA----C-A 1501 GCA|GUG-AG GAAUAUUGGU C-AAUGGCC( ---------- ----GAAA)G GCUGA-ACC| 1561 A|-GUAA-C- UU-GGA---- -AGAAUGUAA --GUGU-AUU (--------a u--ugu---- 1621 --------)A AUACAAUAAC GAUU|----- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- -(-------- )aacucguau aaaauucuaa 1801 auaggauaau gauaaugaca auuuccuauu ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- -----UAUAA GUCUU|-GAC 1921 -CAAAU---U ACGU-G(-CC AGCAGUC-GC -GGU-AA)-U ACGUAG|--- -AAG-ACU-- 1981 AGUGU-UAGU CAU--CUUUA UUAGGU|UUA AAGGGUACCU -A-GACG|GU AAAUUA--AA 2041 |CUC------ ---------- -------(-- --uaaau)-- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ------GAGu ---------- ---------- 2221 ---------- ---------- ---------- ---------- ------AC|U UUUUUAC-UA 2281 G-----AGUU -Uu-AUgu-g -AGAAG--GA -----|AGAA UUUCUG-GAG ---UAGGG(a 2341 ugaaa)UAC- uuu---GAUA CCAG-AAG-G ACU------- ----GGUAAC -GGC(-GAAG 2401 -)GC|A---- ----UCCUUC U-AUGUAAA- AA---CUGAC GUU--GAGGG ACGAA-GGCU 2461 U-GGG---UA GCAAUAAGG( AUUAGAUAC) CCUA-GUAG| -UCCA-AGC- AGAAAA-UGA 2521 U--GAAU-GU |CA|UAGGCU AGAuuu(aaa a-u------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---)-----U UAGUCUA-UA AAU(GAAA)G UG-UAAGCAU 2701 U-C|--C|AC C-UCAA-GAG UAAUAUG(-- -GCAA--)CA UAU--AAACU GAAAUCAU-U 2761 AG|ACCGUU- UCUGAA---A CCAGUAGU|G AAGUAUGU-U |AUUUAA-UU CG(AUAACCC 2821 G--------- ----)CGAAA A-ACCUUACC ACAGUuugaa uaacaauaaa a--------- 2881 ---------u ug--u----- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------u a--c---AAG CGC-UG|CA- 3121 |CG|-GC--U |G------UC UU-UA|G-UU AAU-|GUC(G --UGA)GAUU U--GG(UUA- 3181 ACU)CCUC-- U-AAUUAACG AAA-ACCCU- ----cacuuu auuug----- -----(aaua 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|-----c auaaagugGU -UCGCCA-C- (UACA-U)-- UGGaccAGAU 3781 A----AUA-G GGAUUA-AGA C-AAGUCAUC A|UGGC|CUA AAU------- ---------A 3841 C-U-GU-GGG CU-AUA--GA -CGUGCCACA UA--CGCCuu a-ACAA-AGG GA--UGCGA- 3901 UAUU<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--G UGA--)AAUG -GAGCUAAUC CCCA--aaau uGG-AUAUAA 4021 ---------- -----UAUGG --AUUGU-AG U-C(------ ---------- ---------- 4081 ---------- ---------- UGUAAc-uc) G-AC-U--AC -A--UGAAU- -AAGGAAUUA 4141 C-U--AGUAA U-CGUGAA(- UCACCAUC-- --)GUCACGG U-GAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -UUU--A-AU 4261 CUCAGC-UA- GGUACUAA-C -CACUCGUCA G-GCG--CUG AAA-GGAgua ugugcaa--- 4321 ---------- ---------- ---------- ---------- ---------< -uaaguuuga 4381 uuugc-uuau guauuaauau auauaa(uca g)guauauaa auauguaagu auuauuuucg 4441 ua-------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 -------ugc augacUUUGA UUGG-UGU-U AAGUCGAAAU AU~~~~~~-~ ~~~-~~(~~~ 4621 -~)~~~-~~- ~~~~~~~~~~ -----~~~-| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS mt.E.nid.2 5213 bp RNA RNA 09-MAY-1996 DEFINITION Mitochondrion Emericella nidulans.; ATPase; cytochrome; cytochrome oxidase; oxidase; transfer RNA; transfer RNA-Ala; transfer RNA-Arg; transfer RNA-Asn; transfer RNA-Asp; transfer RNA-Gln; transfer RNA-Glu; transfer RNA-Gly; transfer RNA-His; transfer RNA-Ile; transfer RNA-Leu; transfer RNA-Lys; transfer RNA-Met; transfer RNA-Phe; transfer RNA-Pro; transfer RNA-Ser; transfer RNA-Thr; transfer RNA-Trp; transfer RNA-Tyr; transfer RNA-Val; unidentified reading frame. ACCESSION J01390 KEYWORDS ATPase; cytochrome; cytochrome oxidase; oxidase; transfer RNA; transfer RNA-Ala; transfer RNA-Arg; transfer RNA-Asn; transfer RNA-Asp; transfer RNA-Gln; transfer RNA-Glu; transfer RNA-Gly; transfer RNA-His; transfer RNA-Ile; transfer RNA-Leu; transfer RNA-Lys; transfer RNA-Met; transfer RNA-Phe; transfer RNA-Pro; transfer RNA-Ser; transfer RNA-Thr; transfer RNA-Trp; transfer RNA-Tyr; transfer RNA-Val; unidentified reading frame. SOURCE Mitochondrion Emericella nidulans. ORGANISM Mitochondrion Emericella nidulans. REFERENCE 1 (bases 5833 to 7155; 11536 to 12832) AUTHORS Kochel,H.G., Lazarus,C.M., Basak,N. and Kuntzel,H. TITLE Mitochondrial tRNA gene clusters in Aspergillus nidulans: organization and nucleotide sequence JOURNAL Cell 23 (2), 625-633 (1981) STANDARD No information REFERENCE 2 (bases 2205 to 4121) AUTHORS Kochel,H.G. and Kuntzel,H. TITLE Nucleotide sequence of the Aspergillus nidulans mitochondrial gene coding for the small ribosomal subunit RNA: homology to E. coli 16S rRNA JOURNAL Nucleic Acids Res. 9 (21), 5689-5696 (1981) STANDARD No information REFERENCE 3 (bases 1 to 2600; 3901 to 6000; 6901 to 11800; 12605 to AUTHORS Netzker,R., Kochel,H.G., Basak,N. and Kuntzel,H. TITLE Nucleotide sequence of Aspergillus nidulans mitochondrial genes coding for ATPase subunit 6, cytochrome oxidase subunit 3, seven unidentified proteins, four tRNAs and L-rRNA JOURNAL Nucleic Acids Res. 10 (15), 4783-4794 (1982) STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: J01390, V00653 14440) [2] compares given sequence with that of E.coli 16S rRNA. [3]: one of the unidentified polypeptides (urf's) is located in the intron of the l-rRNA gene & codes for a basic protein of 410 residues. The other urf's are in spacer regions & code for hydrophobic proteins. Urf-a is homologous to human urf4, and urf-b produces a polypeptide of 48 residues resembling the human urf6l product (hydrophobic N-terminus, basic C-terminus). The ATPase subunit 6 genes from mitochondria and E.coli appear to share a common ancestor. The codon frequencies of identified genes and urf's are similar, and codons ending with G or C are rarely used. For partial sequence of A.nidulans mt apocytochrome b gene that lies within H2 region see <animtcyb1>, <animtcyb2>. s-rRNA = small ribosomal subunit RNA; l-rRNA = large ribosomal subunit RNA. BASE COUNT 500 a 208 c 300 g 429 t 3776 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- -------aaa auuuuGAGUU 661 (UGA-)U-GA U|GGCUC-UG AUUGAACGCU -G-UCCA-AG |UA-CU--UG ACAC-A-UGC 721 -UAAUCG-AA CGACU|AAUU AGUU------ ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- ---------- ---auua--- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- AACUAAGU|A 961 G--UA-GU|G GUGUACAGGU GAGUAA-aaG A|UAA-UUug --GC---UAC CUUAA-AGUA 1021 AGGGG----- -------(aa aa-a)----- --------UC CCUUAUA--- ---------- 1081 ---------- ---------- ---------- ---------- -----AAAAG AAAGGAaaaa 1141 gaagg-UCC- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ------GCUU UAAGAUGUU- --AAUUA-UU |a------uC ACGG--UG-- 1321 -AGUAGUAGU AA-AG(GUAA uga------- ---------- ---------- ------)CUU 1381 UACUA|---- GCUAA----A U|CCGUA-GU CG|--uGACU (GAGA--)GG UCGAUCGAC| 1441 CACAUU-GGG UC(UGAAA-- AA-)ACCCCA A|UGCgu--( uu-u-)--a- GUA----C-A 1501 GCA|GUG-AG GAAUAUUGGU C-AAUGGCC( ---------- ----GAAA)G GC-GA-ACC| 1561 A|-GUAA-C- UU-GGA---- -AGAAUGAAA --GUGU-AUU (--------a uaau------ 1621 --------)A AUACAAUAAC GAUU|----- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- -(-------- )auaucguau aaaauucuaa 1801 auagaauaau gauaaugaca auuuucuauu ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- -----UAUAA GUCUU|-GAC 1921 -CAAaC---U ACGU-G(-CC AGCAGUC-GC -GGU-AA)-U ACGUAG|--- -AAG-ACU-- 1981 AGUGU-UAAU CAU--CUUUA UUAGGU|UUA AAGGGUACCU -A-GACG|GU AAAUUA--AA 2041 |CUC------ ---------- -------(-- --uaaau)-- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ------GAGU ---------- ---------- 2221 ---------- ---------- ---------- ---------- ------AC|U UAUUUAC-UA 2281 G-----AGUU -UU-AUgu-a -AGAAG--GA -----|AGAA GCUCUG-GAG ---UAGUG(A 2341 UAUAA)UAC- GUA---UAUA CCAG-AGA-G ACU------- ----GGUAAC -GGC(-GAAG 2401 -)GC|A---- ----UCCUUC U-AUGUAAA- AA---CUGAC GUU--GAGGG ACGAA-GGCU 2461 U-GGG---UA GCAAGAAGG( AUUAGAUAC) CCUA-GUAG| -UCCA-AGC- AGACAA-UGA 2521 U--GAAU-GU |CA|UAGACU AGAaaa(agu cguuuagacu au-------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---)aaa-UU UAGUCUA-UA AAU(GAAA)G UG-UAAGCAU 2701 U-C|--C|AC C-UCAA-GAG UAAUAUG(-- -GCAA--)CA UAU--AAACU GAAAUCAU-U 2761 AG|ACCGUU- UCUGAG---A CCAGUAGU|G AAGUAUGU-U |AUUUAA-UU CG(AUGAUCC 2821 G--------- ----)CGAAA A-ACCUUACC ACAGUUUGAA Uau------- ---------- 2881 (--------u u--)------ ---------- -------<-- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ->-------u a--C---AAG CGC-UG|CA- 3121 |CG|-GC--U |G------UU UU-UA|G-UU AAU-|GUC(G --UGA)GAUC U--GG(UUA- 3181 AGU)CCU-U- U-AAUUAACG AAA-ACCCU- ----cacuuu auuug----- -----(cauu 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|-----u auaaaguuGA -UCGCCU-U- (UAUA-U)-- UGGuu-AGAU 3781 A----AUA-G GGAUUA-AGA C-AAGUCAUC A|UGGC|CUU AAU------- ---------A 3841 C-U-GU-GGG CU-AUA--GA -CGUGCCACA UA--UGCCUU U-ACAA-AGG GA--UGCGA- 3901 UUUU<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--G UG---)AAAu uGAGCUAAUC CCCC-AAAAA AGG-AUAUAA 4021 ---------- -----UAUGG --AUUGU-AG U-C(------ ---------- ---------- 4081 ---------- ---------- UGUAAc-uc) G-AC-U--AC -A--UGAAU- -AAGGAAUUA 4141 C-U--AGUAA U-CGUGAA(- UCACCAUC-- --)GUCACGG U-GAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -UUA--A-AA 4261 AUCAGC-UG- GGUACUAA-C -CACUCGUCA G-GCG--CUG AAA-GAAgua ugugcaa--- 4321 ---------- ---------- ---------- ---------- ---------< gaaguuugau 4381 uuacu-uaua uuuauaauau auauaa(uca g)uuauauau auuuauaagu uaaauuuucg 4441 ca-------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 -------ugc augacUUUGA UUGG-UGU-U AAGUCGAAAU AUGGUUCG-U GUA-AU(GGA 4621 -A)AUU-GC- ACGGGAUGAA -----UUA-| ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- --------|| ||| // LOCUS mt.P.chr.1 5213 bp RNA RNA 11-JAN-191 DEFINITION Mitochondrion Penicillium chrysogenum. ACCESSION No information KEYWORDS No information. SOURCE Mitochondrion Penicillium chrysogenum. ORGANISM Mitochondrion Penicillium chrysogenum. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: L01493 DEFINITION Penicillium chrysogenum mitochondrial ribosomal RNA small subunit gene. SOURCE Mitochondrion Penicillium chrysogenum (organelle Mitochondrion Penicillium chrysogenum) (library: KCTC 1262) DNA. ORGANISM Mitochondrion Penicillium chrysogenum Eukaryota; Fungi; Ascomycota; Plectomycetes; Eurotiales; Trichocomaceae. REFERENCE 1 (bases 1 to 1482) AUTHORS Kochel,H. and Kuntzel,H. TITLE Nucleotide sequence of the Aspergillus nidulans mitochondrial gene coding for the small ribosomal subunit RNA: homology to E.coli 16S rRNA JOURNAL Nucleic Acids Res. 9, 5689-5696 (1981) REFERENCE 2 (bases 1 to 1482) AUTHORS Sekiguchi,J., Ohsaki,T., Yamamoto,H. and Koichi,K. TITLE Characterization and comparison of mitochondrial DNAs and rRNAs from Penicillium urticae and P.chrysogenum JOURNAL J. Gen. Microbiol. 136, 535-543 (1990) REFERENCE 3 (bases 1 to 1482) AUTHORS Sheen,J. TITLE Characterization and comparison of mitochondrial DNAs and RNAs from Penicillium urticae and P.chrysogenum JOURNAL Unpublished (1992) FEATURES Location/Qualifiers rRNA 95..>1482 /product="ribosomal RNA small subunit" source 1..1482 /organism="Mitochondrion Penicillium chrysogenum" /organelle="Mitochondrion Penicillium chrysogenum" /tissue_lib="KCTC 1262" /sequenced_mol="DNA" BASE COUNT 467 a 222 c 289 g 410 t 3825 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ----|----- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- -------aaa auagaGAGUU 661 (UGA-)ucga u|GGCUC-UA ACUGAACACU -G-UCCA-AG |UA-CU--UG ACAC-A-UGC 721 -UAAUCG-AA CGACU|AAUU AGUUuaau-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- ------uauu ---------- 841 aucu------ ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- --aauauuua AAUUAAGU|A 961 G--UA-GU|G GUGUACAGGU GAGUAA--aG A|UAA--Uug --gc---UAC Cuuaa-cguA 1021 AGGGa----- -------(aa au-a)----- --------gC CCUUAUG--- ---------- 1081 ---------- ---------- ---------- ---------- -------acc caa-gu--ua 1141 auauu-acc- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ------GCUU UA-GAUgau- --AUUUA-UC |--------- uCGG--UG-- 1321 -AGUAGUAGG AA-GG(-ua- uga------- ---------- ---------- ------)CUU 1381 U-CUA|---- GCA------- -|-------- --|--uAACU (AGGAA-)AG UUGAUCGAC| 1441 CACAUU-GGG UC(UGAAA-- AA-)AACCCA A|UGCuu--( uu-a-)--u- GUA----C-A 1501 GCA|GUG-AG GAAUAUUGGU C-AAUGGCC( ---------- ---GAAAC)G GU-GA-ACC| 1561 A|-GUAA-C- UU-GGA---- -AGAAUGUCU --AUGU-AAC (--u------ uguau----- 1621 -------g)G UUACAuucgC GAUU|----- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- -(-------- )aacucgcau aaaauucuaa 1801 auagauugua uauaaugac- auauc-uau- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ----uUAUAA GUCU-|-GAC 1921 cCAAaC---U ACGU-G(-CC AGCAGUC-CG -GGU-AA)-U ACGUAG|--- -GAG-GCU-- 1981 AGUGU-UAGU UAU--CUUUA UUGGGU|UUA AAGGGUAAGU -A-GACG|GU AAAUUA--AA 2041 |CUC------ ---------- -------(-- --uaaac)-- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ------GAGu ---------- ---------- 2221 ---------- ---------- ---------- ---------- ------AC|U UUUUUAC-UA 2281 G-----AGUU -AU-AUga-g -AGAAG--GA -----|AGAA UUUCUG-GAG ---UAGAG(A 2341 UAAAA)UUUc gau-c-GAUA CCAG-GAG-G ACU------- ----GUCAAC -GGC(-GAAG 2401 -)GG|C---- ----UCCUUC U-AUGUAAU- AA---CUGAC GUU--GAGAG ACGAA-GGCU 2461 U-GG----UA GCAAACAGG( AUUAGAUAC) CCcuaAUAG| -UCCA-AGC- AGACAA-UGA 2521 U--GAAU-GU |CA|UACAUU AGAuau(aau ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---)----UU UAAUGUA-UA AAC(GAAA)G UG-UAAGCAU 2701 U-C|--C|AC C-UCAA-GAG UACUAUG(-- -GCAA--)CA UAU---AACU GAA-UCAU-U 2761 AG|ACCGUU- -CUA-----A CCAGUAGU|G AA-------- |--------U CG(AUGAUCC 2821 G--------- ----)CGAAA A-ACCUUACC ACAGCUUGUA Uagca----- ---------- 2881 ---ua---uu au-aaaa--- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ->aau-uguu a--c--aAGC CGC-UG|CA- 3121 |UG|-GC--U |G------UC UU-UA|G-UU AAU-|GUC(G --UGA)GAUU U--GG(UUA- 3181 AUU)CCU-U- U-AAUUAACG AAA-ACCCU- ----cacuuu auuua----- -----(uuua 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|-----u auaaaguggu cgcacaa-c- -ggaccagau aaucagggau 3781 g----cuA-G GGAUUA-AGA C-AAGUCAUU A|UGGC|CUU AAU------- ---------G 3841 C-U-GU-GGG CU-AUA--GA -CGUGCCACA UA--CGCCUU U-acaa-cgg ga--ugcga- 3901 uauu<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--g uga--)aaug -gagcuaauc ccc--aaaAA AGG-AAAUAA 4021 ---------- -----UAUGG --AUUGU-AG U-C(------ ---------- ---------- 4081 ---------- ---------- UGUAAc-uc) G-AC-U--AC -A--UGAAA- -AAGGAAUUA 4141 C-U--AGUAA U-CGUGAA(- UCACCAAC-- --)GUCACGG U-GCA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- auuu--U-AU 4261 CUUAGU-UA- GGUACUAA-C -CACUCGUCA G-GCG--CUG Aaaaaaagaa gaugcag--- 4321 ---------- ---------- ---------- ---------- ---------< uaaguuugau 4381 uuuuu-ucug uguaa-guua uauauauuua u(-gau-)au auaaauaugc cacggauagu 4441 uu-cg-a-gc aaacuugacg ca-------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 -------ugc augacUUUGA UUGG-UGU-~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~-~~(~~~ 4621 -~)~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS mt.P.chr.2 5213 bp RNA RNA 11-JAN-191 DEFINITION Mitochondrion Penicillium chrysogenum. ACCESSION No information KEYWORDS No information. SOURCE Mitochondrion Penicillium chrysogenum. ORGANISM Mitochondrion Penicillium chrysogenum. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: Z23072, L01493 DEFINITION P.chrysogenum mitochondrion genes for tRNA-Arg, tRNA-Asn, tRNA-Tyr, small subunit rRNA, and ATPase subunit 6 SOURCE Penicillium chrysogenum ORGANISM Mitochondrion Penicillium chrysogenum Eukaryota; Plantae; Thallobionta; Eumycota; Ascomycotina; Plectomycetes; Eurotiales; Trichocomaceae. REFERENCE 1 (bases 1 to 4785) AUTHORS Kochel,H. and Kuntzel,H. TITLE Nucleotide sequence of the Aspergillus nidulans mitochondrial gene coding for the small ribosomal subunit RNA: homology to E.coli 16S rRNA JOURNAL Nucleic Acids Res. 9, 5689-5696 (1981) REFERENCE 2 (bases 1 to 4785) AUTHORS Sheen,J., Kim,S., Kho,Y.H. and Bae,K.S. TITLE Genomic DNA sequences of mitochondrial tRNA genes in fungi Penicillium chrysogenum KCTC1262:tRNA-arg, tRNA-asn, and tRNA-tyr genes JOURNAL Nucleic Acids Res. 20, 5842-5842 (1992) REFERENCE 3 (bases 1 to 4785) AUTHORS Sheen,J. TITLE Genomic sequence of mitochondrial DNA: Genes for tRNA-arg,tRNA-asn, tRNA-tyr,ATPase subunit 6,and SSU-rRNA gene in Penicillium chrysogenum JOURNAL Unpublished REFERENCE 4 (bases 1 to 4785) AUTHORS Sheen,J. TITLE Direct Submission JOURNAL Submitted (18-JUN-1993) Sheen J., Genetic Engineering Research Institute, K.I.S.T., Korean Collection for Type Cultures, Taeduck Science Town, Yuseong-gu, Taejeon, Republic of Korea, 305-606 FEATURES Location/Qualifiers source 1..4785 /organism="Penicillium chrysogenum" /mitochondrion /strain="KCTC 1262" /clone="pSR-H2" tRNA 729..798 /function="transfer RNA for amino acid arginine" /product="tRNA-Arg" /gene="tRNA-Arg" /anticodon=(pos:761..763,aa:Arg) /citation=([2],[3]) /note="Arg-tRNA gene, identified by the cloverleaf structure of its putative transcript and assigned to the amino acid arginine by its anticodon sequence UCU" tRNA 832..902 /function="transfer RNA for amino acid asparagine" /product="tRNA-Asn" /gene="tRNA-Asn" /anticodon=(pos:864..866,aa:Asn) /citation=([2],[3]) /note="Asn-tRNA gene, identified by the cloverleaf structure of its putative transcript and assigned to the amino acid asparagine by its anticodon sequence GUU" rRNA 2413..3861 /function="mitochondrial ribosome formation" /product="small subunit rRNA" /gene="s-rrna" /standard_name="SSU-rRNA" /citation=[3] /note="The coding region of SSU rRNA gene is defined by extensive homology with mitochondrial SSU rRNA of Aspergillus nidulans" tRNA 3960..4044 /function="transfer RNA for amino acid tyrosine" /product="tRNA-Tyr" /gene="tRNA-Tyr" /anticodon=(pos:3995..3997,aa:Tyr) /citation=([2],[3]) /note="Tyr-tRNA gene, identified by the cloverleaf structure of its putative transcript and assigned to the amino acid tyrosine by its anticodon sequence GUA" CDS 1258..2031 /function="Oxidative phosphorylation" /standard_name="ATPase 6" /citation=[3] /note="The coding region of ATPase subunit 6 gene is defined by extensive homology(about 84%) with ATPase subunit 6 of A.nidulans" /product="ATPase subunit 6" /codon_start=1 /translation="MRHLDFVLSPLDQFEVRDLFSLNANLLGNLHLSLTNIGLYLTIS IFLILTYSLLATNNNKIIPNNWSISQESIYATVHGIVVNQINPNKGQMFFPLMYVLFI FILVNNLIGLVPYSFASTSHFILTFSISFTVVLGATILGFQRHGLKFFSLFVPSGCPL ALLPLLVLIEFISYLSRNVSLGLRLAANILSGHMLLSILSGFTYNIMTSGIIFFILGL IPLAFIIAFSGLELAIAFIQAQVFVVLACSYIKDGLDLH" BASE COUNT 503 a 212 c 298 g 436 t 3764 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ----|----- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- -------aaa auagaGAGUU 661 (UGA-)U-GA U|GGCUC-UA ACUGAACACU -G-UCCA-AG |UA-CU--UG ACAC-A-UGC 721 -UAAUCG-AA CGACU|AAUU AGUUuaau-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- ------uauu ---------- 841 aucu------ ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- --aauauuua AAUUAAGU|A 961 G--UA-GU|G GUGUACAGGU GAGUAA-aaG A|UAA-AUug --gc---UAC CUUAA-AGUA 1021 AGGGa----- -------(aa aa-a)----- --------uC CCUUAUA--- ---------- 1081 ---------- ---------- ---------- ---------- -------acc aaaggu--ua 1141 auauu-acc- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ------GCUU UAAGAUgau- -aAUUUA-UC |--------- uCGG--UG-- 1321 -AGUAGUAGG AA-GG(-uaa uga------- ---------- ---------- ------)CUU 1381 UUCUA|---- GCAau---aa a|CCGUA-GU CG|--uAACU (GGAA--)AG UUGAUCGAC| 1441 CACAUU-GGG UC(UGAAA-- AA-)AACCCA A|UGCuu--( uu-a-)--u- GUA----C-A 1501 GCA|GUG-AG GAAUAUUGGU C-AAUGGCC( ---------- ----GAAA)C GU-GA-ACC| 1561 A|-GUAA-C- UU-GGA---- -AGAAUGUCU --AUGU-AAC (--u------ uguau----- 1621 -------g)G UUACAuucgC GAUU|----- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- -(-------- )aacucgcau aaaauucuaa 1801 auagauugua uauaaugac- auaaucuau- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ----uUAUAA GUCUU|-GAC 1921 -CAAaC---U ACGU-G(-CC AGCAGUC-GC -G-U-AA)-U ACGUAG|--- -GAG-GCU-- 1981 AGUGU-UAGU UAU--CUUUA UUGGGU|UUA AAGGGUAAGU -A-GACG|GU AAAUUA--AA 2041 |CUC------ ---------- -------(-- --uaaac)-- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ------GAGu ---------- ---------- 2221 ---------- ---------- ---------- ---------- ------AC|U UUUUUAC-UA 2281 G-----AGUU -AU-AUga-g -AGAAG--GA -----|AGAA UUUCUG-GAG ---UAGAG(A 2341 UAAAA)UUU- GAU---GAUA CCAG-GAG-G ACU------- ----GUCAAC -GGC(-GAAG 2401 -)GC|G---- ----UCCUUC U-AUGUAAU- AA---CUGAC GUU--GAGAG ACGAA-GGCU 2461 U-GGG---UA GCAAACAGG( AUUAGAUAC) CCUA-AUAG| -UCCA-AGC- AGACAA-UGA 2521 U--GAAU-GU |CA|UACAUU AGAuau(aau ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---)----UU UAAUGUA-UA AAC(GAAA)G UG-UAAGCAU 2701 U-C|--C|AC C-UCAA-GAG UACUAUG(-- -GCAA--)CA UAU--AAACU GAAAUCAu-U 2761 AG|ACCGUU- UCUAAA---A CCAGUAGU|G AAGUAUGU-U |AUUUAA-UU CG(AUGAUCC 2821 G--------- ----)CGAAA A-ACCUUACC ACAGCUUGUA Uagca----- ---------- 2881 ---ua---uu au-aaaa--- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- --aau-uguu a--c---AAG -GC-UG|CA- 3121 |UG|-GC--U |G------UC UU-UA|G-UU AAU-|GUC(G --UGA)GAUU U--GG(UUA- 3181 AUU)CCU-U- U-AAUUAACG AAA-ACCCU- ----cacuuu auuua----- -----(uuua 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|-----u auaaaguggu -ucgcuacua cau------- cggaccagau 3781 a----auA-G GGAUUA-AGA C-AAGUCAUU A|UGGC|CUU AAU------- ---------G 3841 C-U-GU-GGG CU-AUA--GA -CGUGCCACA UA--CGCCUU U-acaa-cgg ga--ugcga- 3901 uauu------ ---------- ---------- ---------- ---------- ---------- 3961 ---------- ------(--g uga--)aaug -gagcuaauc ccc--aaaAA AGG-AAAUAA 4021 ---------- -----UAUGG --AUUGU-AG U-C(------ ---------- ---------- 4081 ---------- ---------- UGUAAc-uc) G-AC-U--AC -A--UGAAA- -AAGGAAUUA 4141 C-U--AGUAA U-CGUGAA(- UCACCAAC-- --)GUCACGG U-GAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -UUU--U-AU 4261 CUUAGU-UA- GGUACUAA-C -CACUCGUCA G-GCG--CUG Aaa-aaagaa gaugcag--- 4321 ---------- ---------- ---------- ---------- ---------< uaaguuugau 4381 uuuuu--cug uguaaaguua uauauauuua u(-gau-)au auaaauaugc -a-ggauagu 4441 uuucguaugc aaaa------ ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- ----cUUUGA UUGG-UGU-U AAGUCGAAAU AAGGUUCG-U GUA-AU(GGA 4621 -A)AUU-GC- ACGGGGAGUA UAAAA----| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS mt.T.rubru 5213 bp RNA RNA 11-JAN-191 DEFINITION Trichophyton rubrum. ACCESSION No information KEYWORDS No information. SOURCE Trichophyton rubrum. ORGANISM Trichophyton rubrum. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: X88896 LOCUS TRMITOGEN 5207 bp DNA PLN 10-OCT-1995 DEFINITION T.rubrum ND4, ATP6, SSUrRNA, ND6, COXIII, ATP8, and 6 tRNA genes. ACCESSION X88896 KEYWORDS atp6 gene; atp8 gene; coxIII gene; ND4 gene; ND6 gene; small subunit ribosomal RNA; tRNA-Asp gene; tRNA-Gly gene; tRNA-Ile gene; tRNA-Lys gene; tRNA-Trp gene; tRNA-Tyr gene. SOURCE Trichophyton rubrum. ORGANISM Mitochondrion Trichophyton rubrum Eukaryotae; mitochondrial eukaryotes; Eumycota; Ascomycotina; Plectomycetes; Onygenales; Arthrodermataceae; mitosporic Arthrodermataceae; Trichophyton. REFERENCE 1 (bases 1 to 5207) AUTHORS de Bievre,C. and Dujon,B. TITLE Organisation of the mitochondrial genome of Trichphyton rubrum JOURNAL Unpublished REFERENCE 2 (bases 1 to 5207) AUTHORS de Bievre,C. TITLE Direct Submission JOURNAL Submitted (21-JUN-1995) to the EMBL/GenBank/DDBJ databases. C. De Bievre, Institut Pasteur, 25 rue du Docteur ROUX, F75724 Paris-cedex 15, FRANCE COMMENT NCBI gi: 1017446 FEATURES Location/Qualifiers source 1..5207 /organism="Trichophyton rubrum" /strain="IP.1817.89" /clone_lib="genomic library in pUC19" /clone="C1" /mitochondrion CDS <1..56 /gene="ND4" /note="pid:e200717; NCBI gi: 1017447" /codon_start=3 /transl_table=4 /translation="AVILDGLHYSVSGLIYN" CDS 359..1126 /gene="ATP6" /note="pid:e204052; NCBI gi: 1017448" /codon_start=1 /transl_table=4 /translation="MMFNNIISPLEQFEIKDLFSLNINIINLKMSLTNFGFYIIISTI IILTLHLLITYNNKLISNSWTLTKESIYATVHSVVINQINSKEGQNYFPFIYGLFIFI LMNNLLGLIPYSFSSTSHFILTFFISFTVVLGATILGFQKHQLKFFSLFVPSGCPLGL LPLLVLIELISYLARNVSLGLRLSANILSGHMLLVILSDFTFKIMSSGIFYFLIGLIP LAFIFAFSGLELGIAFIQSQVFIVLTCSYIRDSLELH" rRNA 1421..2824 /product="small subunit ribosomal RNA" tRNA 2870..2944 /gene="tRNA-Tyr" /product="tRNA-Tyrosine" CDS 3022..3633 /gene="ND6" /note="pid:e204053; NCBI gi: 1017449" /codon_start=1 /transl_table=4 /translation="MQLDLYVDKINNGFNSNILDILAFISIILGIYTIVSKNPVVSVL FLIGLFSTISIYLIMIGLTFIGLSYLLVYIGAVSILFLFILMLINIRISELVSTNNNY IPLAILSMITLVYILGQKIITNVVQFNILNSFTSSLFEKSFKESINYSNSLSWDTNLI DITHTSAIGNIMYSSYSFWLIIISLILLLAMVGSIVISIGRVI" CDS 3657..4466 /gene="COXIII" /note="pid:e204054; NCBI gi: 1017450" /codon_start=1 /transl_table=4 /translation="MSLYQRTNFQSHPYHLVWPSPWPFYNSLSLFILTTSGVLTMHGF SNMYIILFIAFINLVWCMTLWFRDIISEGTYLGNHTNAVQRGLNLGVGLFIASEALFF LAIFWTFFHSSLSPNVELGAQWPPLGIKAIDPFELPLLNNIILLSSGVTVNSNYHSLI QGNRKGALYGLVATILLAIVFTIFQGIEYSVSSFTISDGVYGSCFYFSTGFHGFHVLI GTAFLSVGLWRLLGYHLTDHHHLGYESGILYWHFVDVVWLILYVCIYFWGY" CDS 4540..4686 /gene="ATP8" /note="pid:e204055; NCBI gi: 1017451" /codon_start=1 /transl_table=4 /translation="MPQLIPFFFFNQVVFTLISLSFIFFVFSKYILPWIVRLYVSRNQ YNSL" tRNA 4704..4774 /gene="tRNA-Lys" /product="tRNA-Lysine" tRNA 4779..4848 /gene="tRNA-Gly2" /product="tRNA-glycine" tRNA 4857..4927 /gene="tRNA-Asp" /product="tRNA-Aspartate" tRNA 5021..5092 /gene="tRNA-Ile" /product="tRNA-Isoleucine" tRNA 5096..5165 /gene="tRNA-Trp" /product="tRNA-Tryptophan" BASE COUNT 1932 a 588 c 712 g 1975 t ORIGIN BASE COUNT 532 a 192 c 245 g 435 t 3809 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ----|----- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ------auaa auuuuGAGUU 661 (UGA-)U-GA U|GGCUC-UG ACUGAACGCU -A-UCCA-AG |UG-CU--UA ACAC-A-UGC 721 -UAAUCG-UA Cguca|uua- ---------- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- ---------- --aauaaaaa 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ----uaau|g 961 a---a-GU|G GUAAACAGGU GAGUAU-aua a-uau-uuu- -gac---uAC CUUAA-AGAA 1021 AGGu------ -------(ua aa-u)----- ---------c CCUUAUA--- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---auc(aaa 1141 -----)gaa- ---------- -aa(uucu)u uc-------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ------GCUU UAAGauguu- aauaaauauu |--------- uCGGUUUG-- 1321 -UAAUAauua a----(AUAA UAA------- ---------- ---------- ------)--- 1381 auaa-|---- UUAAC--aaa a|CCGUA-GU CG|--UAACU (GAGA--)AG UUGAUCGAC| 1441 CACAUU-AGG AA(UGAGA-- AA-)CUCCUA A|ugcg---( cuuua)---a gua----C-A 1501 GCA|GUG-AG GGAUAUUGGU C-AAUGACC( ---------- ----UAAC)G GUUGA-ACC| 1561 A|-GCAA-C- UU-GGA---- -agaaugcaa --ugua-uua (--------a aaauau---- 1621 --------)u aauac----- -aau-uaacg uguaaacgua uaaaauucua aauagauuaa 1681 agauaa---- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ugacaauuau cuauuuauua GUCUC|-GAC 1921 -CAA-Ua-cU ACGU-G(-CC AGC-GUC-GC --GU-AA)-G ACGUAA|--- -GAG-ACA-- 1981 AGUGU-AAGU CAU--cuuaa uuaGGU|UUA AAGUGUACAU -A-GACG|-a aaaaua-aa- 2041 -ccuuaaaaa gggua----c u--------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- uuuuuuc-UA 2281 G-----AGUU -UU-AU--aa aagaag--aa u----|UGAA UUUUUG-AAG ---AAAAG(A 2341 UAGAA)UUU- GCA---AAUA ACAA-AAA-G ACA------- ----GGUAGC -AGU(-UAAU 2401 -)AC|G---- ----accuuc u-UUAUAAA- AA---CUGAC GUU--GAGGU ACGAA-GGCU 2461 U-GGG---UA ACGAGCAGG( AUUAGAUAC) CCUA-GUAG| -UCCA-AGC- AGAAAA-UUC 2521 U--GAAU-GU |CA|UAAAuu ------(-aa aaa------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---)------ -acUUUA-UA AAU(AAAA)G UG-UAAGCAU 2701 U-C|--C|AC C-UCAA-GAG UACAAUG(-- -GCAA--)CA UUA--AAACU GAAAUCAU-U 2761 AG|GCCGUC- UUUGAA---A CCAGUAGU|G AAGUAUGU-U |AUUUA--UU CG(AUAACCC 2821 G--------- ----)CGAUU A-AUCUUACC ACAAUUUGAA uaauau---- ---------- 2881 --uua---au u--------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ----a-uauu a--C---AUG CGC-UG|CA- 3121 |CG|-GC--U |G------UC UU-UA|G-UU AAU-|GUC(G --UGA)GAU- -uagg(uua- 3181 auu)ccu-a- c-aAUUAGCG AAA-ACCUug -----guau- uau------- -----(---- 3241 --)<-uua-- ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|-----u auguauaaua uaccuug-cc (acua-g)au cggaauauau 3781 a-----uauA GGAUCA-AGA C-AAGUCAUC A|UGGC|CAA AAU------- ---------A 3841 U-U-GU-GGG CU-AUA--GA -CGUGCCACA UU--uuccau u-acaa-aag ga--uguua- 3901 uauu------ ---------- ---------- ---------- ---------- ---------- 3961 ---------- ------(--G UGA--)aaau a-agcuaauc cu----uaaa uuu-guac-- 4021 -aa------- -----UAUGG --AUUGU-AG U-C(------ ---------- ---------- 4081 ---------- ---------- UGUAAc-uc) G-AC-U--AC -A--UGAAU- -AAGGAAUUA 4141 C-U--AGUAA U-CGUUAA(- UCAUC-AC-- --)GUAACGG U-GAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -UAG--uuua 4261 cUCAAU-uaa GGUACUAA-C -CACUCGAAA G-GCG--CUG AAA-gaagaa a--------- 4321 ---------- ---------- ---------- ---------- ---------< ------ugca 4381 auaag-uuug auuugugaau auaaauaaau aua(uaaa)u aguuauaauu uuauauucau 4441 auuauuuucg aauguauaa- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- ----cuuuaa UUGG-UGU-U AAGUCGAAAU AAGGUUCG-U GUA-AU(GGA 4621 -A)AUU-GC- ACGGG----- ---------| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS (7)-PYRENO 5213 bp RNA RNA 25-JAN-1994 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: DIVIDER BASE COUNT 0 a 0 c 0 g 0 t 5213 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ----|..... .......... .......... 541 .......... .......... .......... .......... .......... .......... 601 .......... .......... .......... .......... .......... .......... 661 .......-.. .......... .......... ..-....... |......... ....-..... 721 .......-.. .....|.... ........-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- ------.... .......... 841 .......... .......... .......... .......... .......... .......... 901 .......... .......... .......... .......... .......... .......... 961 .....-..|. .......... .......... .|........ -......... .....-.... 1021 .......... ....---... ..-..---.. .......... .......... .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .......... .......... .......... .......... .......... 1201 .......... .......... .......... .......... .......... .......... 1261 .......... .......... .........- .......... ..----.... ........-- 1321 .......... .......... .......... .......... .......... .......... 1381 ......---. .......... .......-.. .......... .......... .......... 1441 .......... ........-. ..-....... .......... .......... ........-. 1501 ...|...-.. .......... .......... .......... .......... .....-...| 1561 .......... .......... .......... .......... .--....... .......... 1621 .......... .......... .......... .......... .......... .......... 1681 .......... .......... .......... .......... .......... .......... 1741 .......... .......... .......... .......... .......... .......... 1801 .......... .......... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .......... .......... 1921 .......... .......-.. .......... -.......-. .......... .......... 1981 .....-.... ...--..... .......... .......... -......... .......... 2041 .......... .....----. .......... .......... .....----- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- --------.. .......... .......... .......... 2221 .......... .......... .......... .......... ........|. .......-.. 2281 .......... -......... ......--.. .-........ .......... ---....... 2341 .......... ...-...... ....-..... .......... .......... .......... 2401 ....|..... .......... .......... .......... .......... .....-.... 2461 .....--... .......... .......... .......... .......... .......... 2521 .--....-.. |......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... .......... 2701 .-..-..... .......... .......... .......... .......... .......... 2761 ..|....... .......... ........|. ........-. |......... .......... 2821 .--------- ----...... .-........ .......... .......... .......... 2881 .....---.. ..-....... .......... .......... .......... .......... 2941 .......... .......... .......... .......... .......... .......... 3001 .......... .......... .......... .......... .......... .......... 3061 .......... .......... .......... .......... .--....... ...-.....- 3121 .......--. |......... .......-.. .......... .-........ .........- 3181 .......... .-........ .......... .......... .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .......... .......... .......... 3361 .......... .......... .......... .......... .....--... .......... 3421 .......... .......... .......... .......... .......... .......... 3481 .......... ........-- --........ .......... .......... .......... 3541 .......... .......... .......... .......... .......... .......... 3601 .......... .......... .......... .......... .......... .......... 3661 .......... .......... .......... .......... .......... .......... 3721 .......... .......... .......... .......... .....-.... .......... 3781 .......... .......... .......... ......|... ...------- -------... 3841 ...-..-... ..-....... .......... ..-....... ......-... ..--...... 3901 .......... .......... .......... .......... .......... .......... 3961 .......... .......... ...-...... .......... .......... .......... 4021 ......---. .......... .-........ .-........ .......... .......... 4081 .......... .......... ......-... .......... .........- .......... 4141 .-.-...... .......... .......... .......... .-........ .......... 4201 .......... .......... .......... .......... .......... .......... 4261 .......... .......... .......... .-........ ...-...... .......... 4321 .......... ......-... .........- .......... -......... .........- 4381 .....-.... .......... ........-- ....-..... .......... .......... 4441 .......... .......... .......... .......... .......... .......... 4501 .......... .......... ...--..... ........-- .......... .......... 4561 .......... .......... ........-. .......... ........-. ...-...... 4621 -.....-... .......... .......... .......... .......... .......... 4681 .......... .......... .......... .......... .......... .......... 4741 .......... .......... .......... .......... .......... .......... 4801 .......... .......... .......... .......... .......... .......... 4861 .......... .......... .......... .......... .......... .......... 4921 .......... .......... .......... .......... .......... .......... 4981 .......... .......... .......... .......... .......... .......... 5041 .......... .......... .......... .......... .......... .......... 5101 .......... .......... .......... .......... .......... .......... 5161 .......... .......... .......... .......... ........|| ||| // LOCUS mt.C.paras 5213 bp RNA RNA 12-NOV-1997 DEFINITION Mitochondrion Cryphonectria parasitica.; . ACCESSION AF029891 KEYWORDS . SOURCE Mitochondrion Cryphonectria parasitica. ORGANISM Mitochondrion Cryphonectria parasitica. REFERENCE 1 (bases 1 to 11565) AUTHORS Searles,D.B., Monteiro-Vitorello,C.B. and Bertrand,H. TITLE The mitochondrial small subunit ribosomal RNA gene of Cryphonectria parasitica is large and contains four introns JOURNAL Unpublished STANDARD No information REFERENCE 2 (bases 1 to 11565) AUTHORS Searles,D.B., Monteiro-Vitorello,C.B. and Bertrand,H. TITLE Direct Submission JOURNAL Submitted (13-OCT-1997) Microbiology, Michigan State University, East Lansing, MI 48824, USA STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: AF029891 BASE COUNT 564 a 258 c 388 g 554 t 3449 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- guuauauuua uagguGAGUU 661 (UGG-)U-GA U|GGCUC-UG AUUGAACGCU -G-UCCA-AA |UG-CU--UG ACAC-A-UGC 721 -UAAUCG-UA CGuuu|aau- ---------- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------uua uagcuuuuca 841 uauauuagua uuugagcccc auuauuuuuc guaguggugu aauauauuau uccuucgggu 901 ccuuccguaa ggaaggaccc -cuaagguaa caauauauug aagguuu--- ----auua|a 961 a---A-GU|G GUGUACAGGU GAGUGU--aA G|AUA-UUcg -gcc---GAC CUUGA-AGAG 1021 AGGgaaaa-- -------(ga aa-u)----- ---------a CCUCAUA--- ---------- 1081 ---------- ---------- ---------- ---------- --------aa uaaaau(agu 1141 u----)auuu aaua------ ---(----)- -----gcuau auuu(ggau) aaagggugua 1201 aaacc----- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ------GCUU UAAGAggaa- aaGGUAU-CU |--------g uCGGGAUA-- 1321 -GGUAGUAGU UA-AG(GUAA UGG------- ---------- ---------- ------)CUU 1381 AACUA|---- GCCAAUAAUU C|UCGGA-GU CG|--AAGCU (GAAAU-)GG UUGAUCGAC| 1441 CACAUU-GGG AA(UGAAA-- AA-)AUCCCA A|GGCA---( ua-au)---U GUA----C-A 1501 GCA|GUG-AG GAAUUUUGGU C-AAUGCGC( ---------- ----UAAC)G GCUGA-ACU| 1561 G|-GCAA-C- UU-GGA---- -ugaacggac -cgacucuua -----cccaa agguugcauu 1621 auuauuauuu uu-------- ---------- ---------- ---------- ---------- 1681 auguaacuag uaggguaaug gugcaggaga ucuuuuuuag gaguaaaguu cuaaauauau 1741 gauugauaa- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ugacaauaua uaua-u-uaU GUCCU|-GAC 1921 -CAA-U---U ACGU-G(-CC AGCAGUC-GC -GGU-AA)-U ACGUAU|--- -GGG-ACU-- 1981 AGUGU-UAUU CAU--cuuaa auaGGU|UUA AAGGGUUCCU -A-GACG|GC UAAUgc-ca- 2041 -ccuuuaaaa gguaa----c u--------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- AGUUAGC-UA 2281 G-----AGUU -UU-AU--gu gAAGAG--GU -----|CGUA CUUUUGaGUG ---GAGAG(U 2341 UUAAA)UUC- UUU---GAUA CCUG-GAG-G ACG------- ----GAUAAA -GGC(-GAAG 2401 -)GC|A---- ----ACCUCU U-AUGUAAA- AA---CUGAC GUU--GAGGA ACGAA-GGCA 2461 uugcg---UC ACGAAAAGG( ACUAGGGAC) CCUA-GUAG| -ucuu-UGC- AGAAAA-UgA 2521 U--GAGU-GC |CA|UAGAUU agg---(-uu aauu------ ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---)----cu uAGUCUA-UA AAU(GAAA)G UG-UAAGCAU 2701 U-C|--C|AC C-UCAA-GAG UAAUGCG(-- -GCAA--)CG CAG--GAACU GAAAUCAC-U 2761 AG|ACCGUU- UCUGAC---A CCAGCAGU|G AAGUAUGU+U |GUUUAA-UU CG(AUGACCC 2821 A--------- ----)CGAAA A-AUCUUACC ACAAUUUGAA ua-gaauaa- ---------- 2881 ---------- ---------- ---------- ---------- --aguaauua aaacuccauc 2941 uaaauuuccu uuuuuuuuuu gaauauuaag uauaauuaag gugguuuauu cauaguaauu 3001 agaaagugaa uauuggaucu uugguaguuu uagguagu-- ---------- ---------- 3061 ---------- ---------- ---------- -uuau-ucau a--C---AAG UGU-UG|CA- 3121 |CG|-GC--U |G------UU UC-CA|G-UU AAU-|GUU(G --UGA)AACu guggc(a--- 3181 aaa)gcca-u ggaAUUAACG UAA-ACC-ug ----agcuu- uau------- -----(---- 3241 --)<-uugug aa-uauuuua uuuu------ ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|-----g aua-gagcua caucauc-ug cuaua-u)ug gauuugauaa 3781 ------ca-G GGACUA-AGA C-AAGUCAUC A|UGGC|CUU AAU------- ---------A 3841 U-U-GU-GGG CU-AAA--GA -CGUGCCACA UA--uuccuu a-acaa-aga ga--ugcga- 3901 aaua------ ---------- ---------- ---------- ---------- ---------- 3961 ---------- ------(--G CAA--)uauu g-agcuaauc ucaa-aaaag agg-auaaaa 4021 --aau----- a----UAUGG --AUUGU-AG C-C(------ ---------- ---------- 4081 ---------- ---------- UGAAAc-uc) G-GC-U--GC -A--UGAAU- -AAGAAAUUG 4141 C-U--AGUAA U-CGUGAA(- UCACC-AU-- --)GUCACGG U-GAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -UAA--A-AC 4261 CUUGGA-UU- GGUACUAA-C -CACUCGUCA C-AUG--CUG AAA-Ggagua ugcgcaauaa 4321 g--------- ---------- ---------- ---------- ---------< ---------- 4381 -------uuu gcuuucuuau uuuaaaucca uag(uaa-)u gauaggauua cauuuuuuua 4441 auaggauu-- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 cuucguaugc gugauucUAA UUAG-UGU-U AAGUCGAAAU ACGGUUCG-G GUA-GU(GGA 4621 -A)GUU-GC- CCGGGGCUga uuaaccauu| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS mt.N.crass 5213 bp RNA RNA 11-JAN-191 DEFINITION Mitochondrion Neurospora crassa str. 74-OR23-1A. ACCESSION No information KEYWORDS No information. SOURCE Mitochondrion Neurospora crassa str. 74-OR23-1A. ORGANISM Mitochondrion Neurospora crassa. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: L33367,Z34001 Same as Z34001. DEFINITION Neurospora crassa (clone p19StyrB1) mitochondrial 19S ribosomal RNA gene and transfer RNA-Tyr gene, complete. mitochondrial transfer RNA; transfer RNA-Tyr. SOURCE Mitochondrion Neurospora crassa (strain 74-OR23-1A, organelle ORGANISM Mitochondrion Neurospora crassa Eukaryota; Fungi; Ascomycota; Pyrenomycetes; Sordariales; Sordariaceae. REFERENCE 1 (bases 1 to 2071) AUTHORS Chiang,C.-C., Kennell,J.C., Wanner,L.A. and Lambowitz,A.M. TITLE A mitochondrial retroplasmid integrates into mtDNA by a novel mechanism involving the synthesis of a hybrid cDNA and homologous recombination FEATURES Location/Qualifiers rRNA 1..1971 /product="19S ribosomal RNA" /note="putative" tRNA 1972..2058 /anticodon=(pos:2008..2010,aa:Tyr) /product="transfer RNA-Tyr" /note="putative" source 1..2071 /organism="Mitochondrion Neurospora crassa" /strain="74-OR23-1A" /mitochondrion="Mitochondrion Neurospora crassa" /sequenced_mol="DNA" /tissue_type="mycelium" /tissue_lib="FGSC #2489" BASE COUNT 615 a 292 c 409 g 556 t 3341 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ----|----- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 --gauguaau aaaaaaaauu uuuuuuaauu uuauauuaca ucaauaaaaa uagauGAGUU 661 (UGG-)U-GA U|GGCUC-UG AUUGAACACU -G-UUCA-AA |UA-CU--UG ACAC-A-UGC 721 -UAAUCG-AA CGuuu|aauu ---------- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------uu- --uggccuaa 841 gaaagggguu ucaucguggc uuaagcuaag ggguuuauug uggcuuaagc uaagguuuaa 901 ucuuugacuu aagcgggugu uuuaggggaa cuugugcccc uaaaaccucu u--aauua|a 961 a---A-GU|G GUGUACAGGU GAGUAU-aau a|uuu-uu-- --ucgcuuAA CUUAA-AGUG 1021 AAGg------ -------(ca aa-u)----- ---------c CUUCAUA--- ---------- 1081 ---------- ---------- ---------- ---------- -uugcaaaag gauauc(uua 1141 -----)ggca ccuguug-aa a--(----)- ----gg--gg ccua(cuua) uauuauaucc 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ------GCUU UAAGaggau- --gagaa-aa |-----guuu cAGAGAUA-- 1321 -GGUAGUUGU UA-AG(GUCA UGG------- ---------- ---------- ------)CUU 1381 AACAA|---- GCCAAUAAUU C|UCUUA-GU CG|--AAGCU (GAAAA-)GG CUGAUCGAC| 1441 CACAUU-GGG AA(UGAAA-- AA-)AUCCCA A|GGCA---( aa-ua)---G GUA----C-A 1501 GCA|GUG-AG GAAUCUUGGU C-AAUGGGC( ---------- ----CCAC)G CCUGA-ACU| 1561 G|-GUAA-C- UU-GGA---- -GGAAUGAGG -ggucaacuu (-----ugca aauggau--- 1621 --------)g agugau---C -GUU|agaag auccuuaguc cccuggucuu cuugacacau 1681 gagguauaua cuucuagucc auauuggggg gagacuccac gucgauu--- --uaucgagu 1741 aaaauucugu auacauauug gauaa----- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ugacaauaug uaca---uuu GUCUU|-GAC 1921 -UAA-U---U ACGU-G(-CC AGCAGUC-GC -GGC-AA)-U ACGUAA|--- -GAG-ACU-- 1981 AGUGU-UAAU CAU--cauaa auaGGU|UUA AAGGGUACUC -A-GACG|GA AAAAUu-cg- 2041 cccaaauaua gggga----c ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|a AUUUUUC-UA 2281 G-----AGUU -UU-AU--gu aAGAAG--GU -----|CGUA CUCUAGaGUG ---GAGAG(A 2341 UAAAA)UUC- ugu---GAUA CCUA-GGG-G ACG------- ----GGUAAA -GGC(-GAAG 2401 -)GC|A---- ----AUCUUU U-AUGUAAA- AA---CUGAC GUC--GAAGG ACGAA-GGCA 2461 A-AGG---GA ACAAAAAGG( AUUAGAUAC) CCCA-GUAG| -UCUU-UGC- AGACAA-UUA 2521 U--GAAU-GC |CA|UAGGUU AGAuu-(-uu u--------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---)--aaUU UAGUCUA-UA AAU(GAAA)G UG-UAAGCAU 2701 U-U|--C|AC C-UCAA-GAG UAAGGCG(-- -GCAA--)CG CAG--GAACU GAAAUCAC-U 2761 AG|ACCGUU- UCUGAC---A CCAGCAAU|G AAGUAUGU-U |AUUUAA-UU CG(GUGACCC 2821 A--------- ----)CGAAA A-ACCUUACC ACAAUUGAAU -auuaauaau aaugauauua 2881 uuuuu---ua ug-cuugaua uggcaagcac ucaauuuucc ccuccccgua gguuugccgc 2941 ggggggggag aaaaaagaaa aauaauggau aauauaguaa auaccauauu ccaacuauau 3001 uuaau----- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- --uau-uaau a--C---AAG UGU-UG|CA- 3121 |CG|-GC--U |G------UC UU-CA|G-UU GAU-|GUU(G --CGA)AACu -gugg(uuc- 3181 guu)cca-uG G-AAUUAACG UAA-ACCCUU -----gcuu- uau------- -----(---- 3241 --)<-uugu- --aaau---a u--------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|-----u aua-aagcag uucaccu-u- (-uau-a)-u aggaaaugau 3781 a----AAA-G GGAUCA--GA C-AAGUCAUC A|UGGC|CUA AAU------- ---------A 3841 U-U-GU-GGG CU-AUA--GA -CGCGCCACA UU--uuccua a-acaa-aga ga--ugcaa- 3901 aaau------ ---------- ---------- ---------- ---------- ---------- 3961 ---------- ------(--G UGA--)auuu -uagcuaauc ucaa-aaaau agg-auaaaa 4021 aua------- --ua-CAAGG --AUUGU-AG U-C(------ ---------- ---------- 4081 ---------- ---------- UGAAAu-uc) GGAC-U--GC -A--UGAAU- -AAGAAAUUG 4141 C-U--AGUAA U-CGUGAA(- UCACC-AU-- --)GACACGG U-GAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -UAU--U-cc 4261 CUCGGA-UU- GGUACUAA-C -CACUCGUCA C-AUG--CUG AAA-GGAgu- ---------- 4321 ---------- ---------- ---------- ---------- ---------< --gcgugca- 4381 auaag-uuug cuuuucuauu auaaguaa-- guag-acaua uag-guuuag auguuauaau 4441 aggauccuuc guaugcgcg- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- ---gcucuGA UUAG-UGU-U AAGUCGAAAU ACGGUUCG-U GUA-GU(GGA 4621 -A)GUU-GC- ACGGGACUUA ucaauguug| aacaauacga uuggaua~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS mt.P.ans.1 5213 bp RNA RNA ~?~???? DEFINITION Mitochondrion Podospora anserina. ACCESSION No information KEYWORDS No information. SOURCE Mitochondrion Podospora anserina. ORGANISM Mitochondrion Podospora anserina. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: X14734 Phylo:Mitochondria,Fungi,Podospora BASE COUNT 626 a 286 c 382 g 599 t 3320 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ----|----- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---uuuacuc acuuuaacca aaguuGAGUU 661 (UGG-)U-GA U|GGCUC-UG AUUGAACACU -G-UCCA-AA |UA-CU--UG ACAC-A-UGC 721 -UAAUCG-AA CGuuu|aauu aaa--uu--- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- ---------- --uuacaguu 841 gca-----gu aaaguuauuc uuuccuuucu guaaaacugg uuauuaagga gguuuaaauu 901 uaggguuuau ucuccucuau uuauaagguu aaucucucua aagggguuuu uuuaauua|a 961 a---A-GU|G GUGUACAGGU GAGUAU-uau g|guu-uuuu --guac-uac cUAAA-AGUA 1021 AAGG------ -------(ca aa-u)----- ---------C CUUUAUA--- ---------- 1081 ---------- ---------- ---------- ---------- -----guaau aaagaa-cgg 1141 ucaug-uuc- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ------GCUU UUAGAUgaa- --gauaa-aa |a----aucu cGGGGAAA-- 1321 -GGUAGUUGU UA-AG(GUAA uug------- ---------- ---------- ------)CUU 1381 AACAA|---- GCCUAGUAUU C|UCUUA-GU CG|--AAGCU (GAGAAA)GG UUGAUCGAC| 1441 CACAUU-GGG GA(UGAAA-- AA-)AUCCCA A|GGCaa--( ac-g-)--aa GUA----C-A 1501 GCA|GUG-AG GAAUAUUGGU C-AAUGGCC( ---------- ----UAAC)G GCUGA-ACU| 1561 G|-GUAA-C- UU-GGA---- -AGAAUG--- ---GCU-CCA (--u-----a aaa------- 1621 -------a)u ggaguuaauC GAUU|----- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- -(-------- )uau-cgaau aaaauucugu 1801 auacauaccu -auaaugacg guau-guac- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- -----AUCUU GUCUU|-GAC 1921 -CAA-U---U GCGU-G(-CC AGCAGUC-GC -GGC-AA)-U ACGUAA|--- -GAG-ACU-- 1981 AGUGU-UAUU CAU--CUUAA AUAGGU|UUA AAGGGUACUU -A-GACG|GU AGAAUu--ug 2041 |CCU------ ---------- -------(-- ---uaac)-- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ------GGGa ---------- ---------- 2221 ---------- ---------- ---------- ---------- ------AC|A AUUUUAC-UA 2281 G-----AGUU -UU-AUau-a -AGAAG--AU c----|uuac ucuaga-GUG ---UAGAG(U 2341 UGUAA)UUC- AUU---AAUA Ccua-ggg-G ACU------- ----GGUAAA -GGC(-GAAG 2401 -)GC|A---- ----AUCUUU U-AUAUAAA- AA---CUGAC GUU--GAAGG ACGAA-GGCU 2461 U-AGG---UC ACAAAAAGG( AUUAGAUAC) CCAA-GUAG| -UCUU-AGC- AGUCAA-UUA 2521 U--GAAU-GC |CA|UAGGUU AGAu--(aua guuaaauaca aacaagggcg uaagcucgua 2581 uuaaauuuua cc-------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---)---aUC UAGUCUA-UA AAU(GAAA)G UG-UAAGCAU 2701 U-U|--C|AC C-UCAA-GAG UAAUGUG(-- -GCAA--)CG CAG--GAACU GAAAUCAC-U 2761 AG|ACCGUU- UCUGAC---A CCAGCAGU|G AAGUAUGU-U |AUUUAA-UU CG(AUGACCC 2821 A--------- ----)CGAAA A-ACCUUACC ACAACUUGAA u--------- ---------- 2881 ---------- ---------- ---------- --------------- ---C---AAG UGU-UG|CA- 3121 |CG|-GC--U |G------UC UU-CA|G-UU GAU-|GUU(G --UGA)AACu g-ugg(uuc- 3181 ggu)ccau-G G-AAUUAACG AAA-ACCCUU -----gcuuu auuugua--- -----(aauu 3241 c-)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|-ua-aa aua-aagcag uucaccu-g- (-uau-a)-u ggguuaugau 3781 a----AAA-G GGAUCA-AGA C-AAGUCCUC A|UGGC|CUU GAU------- ---------G 3841 U-U-GU-GGG CU-AUA--GA -CGUGCCACA UG--uaccua a-acaa-aga ga--ugcaa- 3901 aaau<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--g uga--)auuu -uagcuaauc uccc-aaaau aggauaaaau 4021 -ua------- --ga-UAUGG --AUUGU-AG U-C(------ ---------- ---------- 4081 ---------- ---------- UGAAAc-uc) G-GC-U--AU -A--UGAAU- -AAGAAAUUG 4141 C-U--AGUAA U-CGUGGA(- UCACCAU--- --)GACACGG U-GAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -UAU--A-AC 4261 UUCGGA-UU- GGUACUAA-C -CACUCGUCA C-AUG--CUG AAA-GGAgu- ---------- 4321 ---------- ---------- ---------- ---------- ---------< augcgcaaua 4381 aguuu-gcug uucuguauua aacaagaaua gaugacg(-g ug)caagcua gauuuuauuu 4441 uuuaauaugg ggcucuucgu augugug--- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- ---acUCUGA UUAG-UGU-A AAGUCGAAAU ACGGUUCG-U GUA-GU(GGA 4621 -A)GUU-GC- ACGGGACUUA -----UUA-| UACUUAACAA UAAAAAUUUU UAUGAAAAUC 4681 CUCAAAUCAA AUUUUGAUUG AUUUUUAUAU AUAUAUAGGA AUAUAUUCUA AAUAUCACUU 4741 GUUAUAUUUA UUAUAUACUA UAUA|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS mt.P.ans.2 5213 bp RNA RNA 05-SEP-1995 DEFINITION Mitochondrion Podospora anserina.; 16S ribosomal RNA homologue; 23S ribosomal RNA homologue; ATPase 6; ATPase 8; COI gene; COII gene; COIII gene; complete genome; cytb gene; cytochrome c oxidase subunit I; cytochrome c oxidase subunit II; cytochrome c oxidase subunit III; cytochrome oxidase b apoprotein; NADH-ubiquinone oxidoreductase subunit 1; NADH-ubiquinone oxidoreductase subunit 2; NADH-ubiquinone oxidoreductase subunit 3; NADH-ubiquinone oxidoreductase subunit 4; NADH-ubiquinone oxidoreductase subunit 4L; NADH-ubiquinone oxidoreductase subunit 5; NADH-ubiquinone oxidoreductase subunit 6; ND1 gene; ND2 gene; ND3 gene; ND4 gene; ND4L gene; ND5 gene; ND6 gene; transfer RNA; transfer RNA-Ala; transfer RNA-Arg; transfer RNA-Asn; transfer RNA-Asp; transfer RNA-Cys; transfer RNA-Gln; transfer RNA-Glu; transfer RNA-Gly; transfer RNA-His; transfer RNA-Ile; transfer RNA-Leu; transfer RNA-Lys; transfer RNA-Met; transfer RNA-Phe; transfer RNA-Pro; transfer RNA-Ser; transfer RNA-Thr; transfer RNA-Trp; transfer RNA-Tyr; transfer RNA-Val. ACCESSION X55026 M30937 M61734 KEYWORDS 16S ribosomal RNA homologue; 23S ribosomal RNA homologue; ATPase 6; ATPase 8; COI gene; COII gene; COIII gene; complete genome; cytb gene; cytochrome c oxidase subunit I; cytochrome c oxidase subunit II; cytochrome c oxidase subunit III; cytochrome oxidase b apoprotein; NADH-ubiquinone oxidoreductase subunit 1; NADH-ubiquinone oxidoreductase subunit 2; NADH-ubiquinone oxidoreductase subunit 3; NADH-ubiquinone oxidoreductase subunit 4; NADH-ubiquinone oxidoreductase subunit 4L; NADH-ubiquinone oxidoreductase subunit 5; NADH-ubiquinone oxidoreductase subunit 6; ND1 gene; ND2 gene; ND3 gene; ND4 gene; ND4L gene; ND5 gene; ND6 gene; transfer RNA; transfer RNA-Ala; transfer RNA-Arg; transfer RNA-Asn; transfer RNA-Asp; transfer RNA-Cys; transfer RNA-Gln; transfer RNA-Glu; transfer RNA-Gly; transfer RNA-His; transfer RNA-Ile; transfer RNA-Leu; transfer RNA-Lys; transfer RNA-Met; transfer RNA-Phe; transfer RNA-Pro; transfer RNA-Ser; transfer RNA-Thr; transfer RNA-Trp; transfer RNA-Tyr; transfer RNA-Val. SOURCE Mitochondrion Podospora anserina. ORGANISM Mitochondrion Podospora anserina. REFERENCE 1 (bases 1 to 100314) AUTHORS Cummings,D.J., Domenico,J.M. and Michel,F. TITLE DNA sequence and organization of the mitochondrial ND1 gene from Podospora anserina: analysis of alternate splice sites JOURNAL Curr. Genet. 14 (3), 253-264 (1988) STANDARD No information REFERENCE 2 (bases 1 to 100314) AUTHORS Cummings,D.J., Domenico,J.M. and Nelson,J. TITLE DNA sequence and secondary structures of the large subunit rRNA coding regions and its two class I introns of mitochondrial DNA from Podospora anserina JOURNAL J. Mol. Evol. 28 (3), 242-255 (1989) STANDARD No information REFERENCE 3 (bases 1 to 100314) AUTHORS Turker,M.S., Domenico,J.M. and Cummings,D.J. TITLE Excision-amplification of mitochondrial DNA during senescence in Podospora anserina. A potential role for an 11 base-pair consensus sequence in the excision process JOURNAL J. Mol. Biol. 198 (2), 171-185 (1987) STANDARD No information REFERENCE 4 (bases 1 to 100314) AUTHORS Cummings,D.J. and Domenico,J.M. TITLE Sequence analysis of mitochondrial DNA from Podospora anserina. Pervasiveness of a class I intron in three separate genes JOURNAL J. Mol. Biol. 204 (4), 815-839 (1988) STANDARD No information REFERENCE 5 (bases 1 to 100314) AUTHORS Cummings,D.J., Domenico,J.M., Nelson,J. and Sogin,M.L. TITLE DNA sequence, structure, and phylogenetic relationship of the small subunit rRNA coding region of mitochondrial DNA from Podospora anserina JOURNAL J. Mol. Evol. 28 (3), 232-241 (1989) STANDARD No information REFERENCE 6 (bases 1 to 100314) AUTHORS Cummings,D.J., MacNeil,I.A., Domenico,J. and Matsuura,E.T. TITLE Excision-amplification of mitochondrial DNA during senescence in Podospora anserina. DNA sequence analysis of three unique 'plasmids' JOURNAL J. Mol. Biol. 185 (4), 659-680 (1985) STANDARD No information REFERENCE 7 (bases 1 to 100314) AUTHORS Cummings,D.J., Michel,F. and McNally,K.L. TITLE DNA sequence analysis of the apocytochrome b gene of Podospora anserina: a new family of intronic open reading frame JOURNAL Curr. Genet. 16 (5-6), 407-418 (1989) STANDARD No information REFERENCE 8 (bases 1 to 100314) AUTHORS Cummings,D.J., Michel,F. and McNally,K.L. TITLE DNA sequence analysis of the 24.5 kilobase pair cytochrome oxidase subunit I mitochondrial gene from Podospora anserina: a gene with sixteen introns JOURNAL Curr. Genet. 16 (5-6), 381-406 (1989) STANDARD No information REFERENCE 9 (bases 1 to 100314) AUTHORS Cummings,D.J., Michel,F., Domenico,J.M. and McNally,K.L. TITLE DNA sequence analysis of the mitochondrial ND4L-ND5 gene complex from Podospora anserina. Duplication of the ND4L gene within its intron JOURNAL J. Mol. Biol. 212 (2), 269-286 (1990) STANDARD No information REFERENCE 10 (bases 1 to 100314) AUTHORS Cummings,D.J., Michel,F., Domenico,J.M. and McNally,K.L. TITLE Mitochondrial DNA sequence analysis of the cytochrome oxidase subunit II gene from Podospora anserina. A group IA intron with a putative alternative splice site JOURNAL J. Mol. Biol. 212 (2), 287-294 (1990) STANDARD No information REFERENCE 11 (bases 1 to 100314) AUTHORS Cummings,D.J., McNally,K.L., Domenico,J.M. and Matsuura,E.T. TITLE The complete DNA sequence of the mitochondrial genome of Podospora anserina JOURNAL Curr. Genet. 17 (5), 375-402 (1990) STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: X55026 BASE COUNT 654 a 294 c 399 g 633 t 3233 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ------guga uguuauugua auuuaauuua auuuaauuua uaauaucauu aauugauaaa 601 gugguguuaa auaaggcgug gcgcaagcuc gccuuuacuc acuuuaacca aaguuGAGUU 661 (UGG-)U-GA U|GGCUC-UG AUUGAACACU -G-UCCA-AA |UA-CU--UG ACAC-A-UGC 721 -UAAUCG-AA CGUUU|Aauu aaa--uu(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- ---------- -)uuacaguu 841 gca-----gu aaaguuauuc uuuccuuucu guaaaacugg uuauuaagga gguuuaaauu 901 uaggguuuau ucuccucuau uuauaagguu aaucucucua aagggguuuu uuuaauua|A 961 A---A-GU|G GUGUACAGGU GAGUAU-uau g|guu-uuuu --guac-uac cUAAA-AGUA 1021 AAGG------ -------(ca aa-u)----- ---------C CUUUAUA--- ---------- 1081 ---------- ---------- ---------- ---------- -----guaau aaagaa-cgg 1141 ucaug-uuc- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ------GCUU UUAGAUgaa- --gauaa-aA |a----aucu cGGGGAAA-- 1321 -GGUAGUUGU UA-AG(GUAA uug------- ---------- ---------- ------)CUU 1381 AACAA|---- GCCUAGUAUU C|UCUUA-GU CG|--AAGCU (GAGAAA)GG UUGAUCGAC| 1441 CACAUU-GGG GA(UGAAA-- AA-)AUCCCA A|GGCaa--( ac-g-)--aa GUA----C-A 1501 GCA|GUG-AG GAAUAUUGGU C-AAUGGCC( ---------- ----UAAC)G GCUGA-ACU| 1561 G|-GUAA-C- UU-GGA---- -AGAAUG--- ---GCU-CCA (--u-----a aaa------- 1621 -------a)u ggaguuaauC GAUU|----- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- -(-------- )uau-cgaau aaaauucugu 1801 auacauaccu -auaaugacg guau-guac- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- -----AUCUU GUCUU|-GAC 1921 -CAA-U---U GCGU-G(-CC AGCAGUC-GC -GGC-AA)-U ACGUAA|--- -GAG-ACU-- 1981 AGUGU-UAUU CAU--CUUAA AUAGGU|UUA AAGGGUACUU -A-GACG|GU AGAAUu--ug 2041 |CCU------ ---------- -------(-- ---uaac)-- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ------GGGa ---------- ---------- 2221 ---------- ---------- ---------- ---------- ------AC|A AUUUUAC-UA 2281 G-----AGUU -UU-AUau-a -AGAAG--AU c----|uuac ucuaga-GUG ---UAGAG(U 2341 UGUAA)UUC- AUU---AAUA Ccua-ggg-G ACU------- ----GGUAAA -GGC(-GAAG 2401 -)GC|A---- ----AUCUUU U-AUAUAAA- AA---CUGAC GUU--GAAGG ACGAA-GGCU 2461 U-AGG---UC ACAAAAAGG( AUUAGAUAC) CCAA-GUAG| -UCUU-AGC- AGUCAA-UUA 2521 U--GAAU-GC |CA|UAGGUU AGAu--(aua guuaaauaca aacaagggcg uaagcucgua 2581 uuaaauuuua cc-------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---)---aUC UAGUCUA-UA AAU(GAAA)G UG-UAAGCAU 2701 U-U|--C|AC C-UCAA-GAG UAAUGUG(-- -GCAA--)CG CAG--GAACU GAAAUCAC-U 2761 AG|ACCGUU- UCUGAC---A CCAGCAGU|G AAGUAUGU-U |AUUUAA-UU CG(AUGACCC 2821 A--------- ----)CGAAA A-ACCUUACC ACAACUUGAA u--------- ---------- 2881 ---------- ---------- ---------- --------------- ---C---AAG UGU-UG|CA- 3121 |CG|-GC--U |G------UC UU-CA|G-UU GAU-|GUU(G --UGA)AACu g-ugg(uuc- 3181 ggu)ccau-G G-AAUUAACG AAA-ACCCUU -----gcuuu auuugua--- -----(aauu 3241 c-)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|-ua-aa aua-aagcag uucaccu-g- (-uau-a)-u ggguuaugau 3781 a----AAA-G GGAUCA-AGA C-AAGUCCUC A|UGGC|CUU GAU------- ---------G 3841 U-U-GU-GGG CU-AUA--GA -CGUGCCACA UG--uaccua a-acaa-aga ga--ugcaa- 3901 aaau<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--g uga--)auuu -uagcuaauc uccc-aaaau aggauaaaau 4021 -ua------- --ga-UAUGG --AUUGU-AG U-C(------ ---------- ---------- 4081 ---------- ---------- UGAAAc-uc) G-GC-U--AU -A--UGAAU- -AAGAAAUUG 4141 C-U--AGUAA U-CGUGGA(- UCACCAU--- --)GACACGG U-GAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -UAU--A-AC 4261 UUCGGA-UU- GGUACUAA-C -CACUCGUCA C-AUG--CUG AAA-GGAgu- ---------- 4321 ---------- ---------- ---------- ---------- ---------< augcgcaaua 4381 aguuu-gcug uucuguauua aacaagaaua gaugacg(-g ug)caagcua gauuuuauuu 4441 uuuaauaugg ggcucuucgu augugug--- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- ---acUCUGA UUAG-UGU-A AAGUCGAAAU ACGGUUCG-U GUA-GU(GGA 4621 -A)GUU-GC- ACGGGACUUA -----UUA-| UACUUAACAA UAAAAAUUUU UAUGAAAAUC 4681 CUCAAAUCAA AUUUUGAUUG AUUUUUAUAU AUAUAUAGGA AUAUAUUCUA AAUAUCACUU 4741 GUUAUAUUUA UUAUAUACUA UAUA|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS (6)-HEMIAS 5213 bp RNA RNA 25-JAN-1994 DEFINITION HEMIASCOMYCETES. ACCESSION No information KEYWORDS No information. SOURCE HEMIASCOMYCETES. ORGANISM HEMIASCOMYCETES. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: DIVIDER BASE COUNT 0 a 0 c 0 g 0 t 5213 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ----|..... .......... .......... 541 .......... .......... .......... .......... .......... .......... 601 .......... .......... .......... .......... .......... .......... 661 .......-.. .......... .......... ..-....... |......... ....-..... 721 .......-.. .....|.... ........-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- ------.... .......... 841 .......... .......... .......... .......... .......... .......... 901 .......... .......... .......... .......... .......... .......... 961 .....-..|. .......... .......... .|........ -......... .....-.... 1021 .......... ....---... ..-..---.. .......... .......... .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .......... .......... .......... .......... .......... 1201 .......... .......... .......... .......... .......... .......... 1261 .......... .......... .........- .......... ..----.... ........-- 1321 .......... .......... .......... .......... .......... .......... 1381 ......---. .......... .......-.. .......... .......... .......... 1441 .......... ........-. ..-....... .......... .......... ........-. 1501 ...|...-.. .......... .......... .......... .......... .....-...| 1561 .......... .......... .......... .......... .--....... .......... 1621 .......... .......... .......... .......... .......... .......... 1681 .......... .......... .......... .......... .......... .......... 1741 .......... .......... .......... .......... .......... .......... 1801 .......... .......... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .......... .......... 1921 .......... .......-.. .......... -.......-. .......... .......... 1981 .....-.... ...--..... .......... .......... -......... .......... 2041 .......... .....----. .......... .......... .....----- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- --------.. .......... .......... .......... 2221 .......... .......... .......... .......... ........|. .......-.. 2281 .......... -......... ......--.. .-........ .......... ---....... 2341 .......... ...-...... ....-..... .......... .......... .......... 2401 ....|..... .......... .......... .......... .......... .....-.... 2461 .....--... .......... .......... .......... .......... .......... 2521 .--....-.. |......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... .......... 2701 .-..-..... .......... .......... .......... .......... .......... 2761 ..|....... .......... ........|. ........-. |......... .......... 2821 .--------- ----...... .-........ .......... .......... .......... 2881 .....---.. ..-....... .......... .......... .......... .......... 2941 .......... .......... .......... .......... .......... .......... 3001 .......... .......... .......... .......... .......... .......... 3061 .......... .......... .......... .......... .--....... ...-.....- 3121 .......--. |......... .......-.. .......... .-........ .........- 3181 .......... .-........ .......... .......... .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .......... .......... .......... 3361 .......... .......... .......... .......... .....--... .......... 3421 .......... .......... .......... .......... .......... .......... 3481 .......... ........-- --........ .......... .......... .......... 3541 .......... .......... .......... .......... .......... .......... 3601 .......... .......... .......... .......... .......... .......... 3661 .......... .......... .......... .......... .......... .......... 3721 .......... .......... .......... .......... .....-.... .......... 3781 .......... .......... .......... ......|... ...------- -------... 3841 ...-..-... ..-....... .......... ..-....... ......-... ..--...... 3901 .......... .......... .......... .......... .......... .......... 3961 .......... .......... ...-...... .......... .......... .......... 4021 ......---. .......... .-........ .-........ .......... .......... 4081 .......... .......... ......-... .......... .........- .......... 4141 .-.-...... .......... .......... .......... .-........ .......... 4201 .......... .......... .......... .......... .......... .......... 4261 .......... .......... .......... .-........ ...-...... .......... 4321 .......... ......-... .........- .......... -......... .........- 4381 .....-.... .......... ........-- ....-..... .......... .......... 4441 .......... .......... .......... .......... .......... .......... 4501 .......... .......... ...--..... ........-- .......... .......... 4561 .......... .......... ........-. .......... ........-. ...-...... 4621 -.....-... .......... .......... .......... .......... .......... 4681 .......... .......... .......... .......... .......... .......... 4741 .......... .......... .......... .......... .......... .......... 4801 .......... .......... .......... .......... .......... .......... 4861 .......... .......... .......... .......... .......... .......... 4921 .......... .......... .......... .......... .......... .......... 4981 .......... .......... .......... .......... .......... .......... 5041 .......... .......... .......... .......... .......... .......... 5101 .......... .......... .......... .......... .......... .......... 5161 .......... .......... .......... .......... ........|| ||| // LOCUS mt.P.canad 5213 bp RNA RNA 11-JAN-191 DEFINITION Pichia canadensis. ACCESSION No information KEYWORDS No information. SOURCE Pichia canadensis. ORGANISM Pichia canadensis. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: D49702 D31785 LOCUS HASMTPRO 1900 bp ds-DNA PLN 28-MAR-1995 DEFINITION Hansenula wingei mitochondrial gene for mitochondrial transfer RNA for Pro, mitochondrial small subunit ribosomal RNA and mitochondrial transfer RNA for Val. ACCESSION D49702 KEYWORDS mitochondrial transfer RNA; small subunit ribosomal RNA; transfer RNA-Val. SOURCE Mitochondrion Hansenula wingei (organelle Mitochondrion Hansenula wingei, strain 21) DNA. ORGANISM Mitochondrion Pichia canadensis Eukaryota; Fungi; Ascomycota; Hemiascomycetes; Endomycetales; Saccharomycetaceae. REFERENCE 1 (bases 1 to 1900) AUTHORS Okamoto,K., Sekito,T. and Yoshida,K. TITLE Nucleotide sequence, secondary structure and phylogenetic relationship of the small subunit rRNA from yeast Hansenula wingei mitochondria JOURNAL Unpublished (1995) COMMENT Submitted (15-Mar-1995) to DDBJ by: Kazuo Yoshida Department of Biological Science Hiroshima University 1-3-1 Higashi-Hiroshima Hiroshima 724 Japan Phone: 0824-24-7455 Fax: 0824-24-0734 E-mail: r515582@ue.ipc.hiroshima-u.ac.jp. NCBI gi: 725334 FEATURES Location/Qualifiers source 1..1900 /organism="Mitochondrion Hansenula wingei" /mitochondrion /strain="21" /sequenced_mol="DNA" tRNA 12..82 /gene="Pro-tRNA" /standard_name="Pro-tRNA" /note="putative" /function="Protein synthesis" /product="Mitochondrial transfer RNA for Pro" promoter 139..147 /standard_name="transcription initiation site" /note="putative" /function="yeast mitochondrial transcriptional initiation" rRNA 201..1737 /gene="SSU" /standard_name="mt SSU rRNA" /function="Protein synthesis" /evidence=experimental /product="Mitochondrial small subunit ribosomal RNA" misc_feature 205..264 /standard_name="Universally conserved region" /note="putative" /number=1 /label=U1 misc_feature 510..562 /standard_name="Universally conserved region" /note="putative" /number=2 /label=U2 misc_feature 720..804 /standard_name="Universally conserved region" /note="putative" /number=3 /label=U3 misc_feature 919..995 /standard_name="Universally conserved region" /note="putative" /number=4 /label=U4 misc_feature 1031..1148 /standard_name="Universally conserved region" /note="putative" /number=5 /label=U5 misc_feature 1308..1373 /standard_name="Universally conserved region" /note="putative" /number=6 /label=U6 misc_feature 1453..1592 /standard_name="Universally conserved region" /note="putative" /number=7 /label=U7 misc_feature 1657..1714 /standard_name="Universally conserved region" /note="putative" /number=8 /label=U8 misc_feature 1724..1733 /standard_name="mRNA binding sequence (anti-SD-like sequence)" /note="putative" /function="mRNA binding" tRNA 1809..1882 /gene="Val" /standard_name="Val-tRNA" /note="putative" /function="Protein synthesis" /product="Mitochondrial transfer RNA for Val" BASE COUNT 824 a 173 c 240 g 663 t ORIGIN BASE COUNT 672 a 144 c 207 g 514 t 3676 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ----|----- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- -aaaaGAAUA 661 (UGA-)U-GU U|AGUUC-AG ACUAAAUACU -A-UAUA-GA |GA-CA--UU ACAC-A-UGC 721 -AAAUCA-AA CGauu|auuu ---------- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- ---------- --aaaaauaa 841 aauuga---- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---aaaua|a 961 uua-A-GU|G GUGUAUUCGU GAGUAA---a a|GAU-AGAA --Uaa--GAA CUAAU-AAUU 1021 CAAc------ -------(ua aa-u)----- ---------a UUGAAUA--- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---aua(aau 1141 -----)aaa- --------ga uuu(aucu)a aauu------ ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ------GUUA UUAGUCAAG- --CUAUU-ua |--------- -UAGUAUA-- 1321 -GGUAUUAUG UA-GG(AUAA AAGC------ ---------- ---------- ------)CAU 1381 ACAUA|---- GCCCA--CAA U|CUAUA-GC AA|--UUAAU (UAAC--)GU UAUAAUUGU| 1441 CACGUC-GAU AA(UGAAA-- UA-)UAAUCG A|UAUCU--( au-a-)--AG AUA----C-A 1501 GCA|GUG-AG GAAUAUUGGG C-AAUGAUC( ---------- ---aaaaa)G AUUGA-CCC| 1561 A|-GUUA-U- CU-AUA---- -AUAAUGAAA --aaua-uag ------cuau uaaagc---- 1621 --------uu aaaauu--aa -AUU|ua--- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- -----uuuaa 1801 uaaaaaaaaa aauaaaauug guaaaaaaua aaguuauagg agagugaaaa uaaugauagu 1861 aacuucaaug aaaauuggua auaauaaaua aauuuauuau uauucugaua GUUCC|-AAC 1921 -UAA-A--AU AUGU-G(-CC AGCAGUU-GC -GGU-UA)-G ACAUAG|--- -GGA-GCA-- 1981 AGUAU-UAGU CAU--AUU-- ---GGU|UUA AAGGAUCCGU -AGAAUU|UA AAU------- 2041 ---------- ---------- -------(-- ---aaag)-- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- --AUUUA-UA 2281 G-----AGUU -AA-UA-aaa gUAAUA--AA -----|UGAA UUAUAA-UAG ---UAAUG(A 2341 UGAAA)UAU- UAU---GAUA AUUA-UAG-G ACA------- ----GACAAG -UUC(-GAAA 2401 -)GU|U---- ----UUUAUU A-UAAAU-U- AA---CUGAC AUU--GAGGG AUGAA-GGCU 2461 A-UAA---UA AUGACAUGG( AUUCGAUAC) CCAA-UUAA| -UUAU-AGC- AGUAAA-CUA 2521 U--GAAU-AC |UU|UUCUau ------(-ua uuaaaaau-- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---)------ -aaAGAA-aA AGA(GAAA)U CA-AUAGUAU 2701 U-C|--C|AC C-AGGA-GAG UAUAAUU(-- -ACUC--)AA UUG--AAACC CAAUACAA-U 2761 AG|ACGGUU- AUAAUC---A AUAGCAGU|G GAGUAUGU-U |AUUUAA-UU CG(AUAAUCC 2821 G--------- ----)CGAAA A-AC-UUACC ACAUUUUGAA uaauuauu-- ---------- 2881 --aua---ua u--------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- --aau-aauu a--C---AGG CGU-UA|CA- 3121 |UA|-GU--U |G------UC UU-CA|G-UU CGU-|GCU(G --UGA)AGUU UAAGG(UUA- 3181 GUU)CCG-U- A-AACGAACG UAU-CCCUAU auaaauaaa- aaaaau---- -----(auua 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|---aua uuu-auaa-u u---uacuau (-uua-a)au gcauaguaaa 3781 -----aAU-A GGAUUA-AGA C-AAAUCAUU A|UGAC|CCU AAU------- ---------A 3841 A-U-GU-GGG CA-AUA--GA -CGUACUAUA AA--aaaaua a-auaa-aau ca--aauaa- 3901 aaua-uauau aaaaaa---- ---------- ---------- -------auu uaauaagaa- 3961 -auaaaac-u ---------- ---------- -uauuuuaau auguuau-au auu-uauaua 4021 uaauaa---u ag---UAUGA --AUUAU-UU A-C(------ ---------- ---------- 4081 ---------- ---------- UGAAAu-uc) G-UA-A--AU -A--UGAAA- -AAAGAAUUG 4141 C-U--AGUAA UCAGUUAU(- UAAUU-AA-- --)AUAACGG U-GAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -UAU--UAUU 4261 AAUUGU-UU- CGCACUAA-U -UACUCGUCA C-GCG--AUA Agu-uaaaaa uaauuacaaa 4321 aauuaa---- ---------- ---------- ---------- ---------< ---------- 4381 ---------u auuauuuaaa uaauauuuau auc(uuaa)u auuuauuaau uauuuuuaua 4441 a--------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ------uuua 4561 auuuaauaau aauuuuuaua UUAU-UGC-G AAGUCGAAAU ACAGUUAC-U GUA-GG(GGA 4621 -A)CCU-GC- AGUGGGCUAU ---------| auauuaucua uua-cauauu ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS mt.S.cer.1 5213 bp RNA RNA 11-JAN-191 DEFINITION Mitochondrion Saccharomyces cerevisiae. ACCESSION No information KEYWORDS No information. SOURCE Mitochondrion Saccharomyces cerevisiae. ORGANISM Mitochondrion Saccharomyces cerevisiae. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: X07799 DEFINITION Yeast mitochondrial 15S rRNA (KL14-4A) SOURCE yeast ORGANISM Mitochondrion Saccharomyces cerevisiae Eukaryota; Plantae; Thallobionta; Eumycota; Hemiascomycetes; Endomycetales; Saccharomycetaceae. REFERENCE 1 (bases 1 to 1649) AUTHORS Weiss-Brummer,B. TITLE Direct Submission JOURNAL Submitted (25-APR-1988) Weiss-Brummer B., Institut fuer Genetik und Mikrobiologie der Universitaet Muenchen, Maria-Ward-Str. 1a, 8000 Muenchen 19, FRG. REFERENCE 2 (bases 1 to 1649) AUTHORS Huettenhofer,A., Sakai,H. and Weiss-Brummer,B. TITLE Site specific AT-cluster insertions in the mitochondrial 15S rRNA gene of the yeast S. cerevisiae JOURNAL Nucleic Acids Res. 16, 8665-8674 (1988) REFERENCE 3 (bases 1 to 1649) AUTHORS Decoster,E., Vassal,A. and Faye,G. TITLE MSS1, a nuclear-encoded mitochondrial GTPase involved in the expression of COX1 subunit of cytochrome c oxidase JOURNAL J. Mol. Biol. 232, 79-88 (1993) FEATURES Location/Qualifiers source 1..1649 /organism="Saccharomyces cerevisiae" /mitochondrion /strain="KL14-4A" rRNA 1..1649 /product="15S ribosomal RNA" mutation replace(1138..1140,"taa") /citation=[3] /note="strain M12-54" BASE COUNT 697 a 144 c 206 g 602 t 3564 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- |--------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------a guaaaaaauu uauaaGAAUA 661 (UGA-)U-GU U|GGUUC-AG AUUAAGCGCU -A-AAUA-AG |GA-CA--UG ACAC-A-UGC 721 -GAAUCA-UA CGuuu|auua uu-------- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- ---------- --gauaa--- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- -gauaaua|a 961 aua-U-GU|G GUGUAAACGU GAGUAA-uuU U|AUUAGGAA --UUaauGAA CUAUA-GAAU 1021 AAGc------ -------(ua aa-u)----- ---------a CUUAAUA--- ---------- 1081 ---------- ---------- ---------- ---------- --uauuauua uauaaa(aau 1141 aa---)uuua uauaauaaaa a--(----)- ----ggauau auau(aua-) auauauauuu 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ------AUCU AUAGUCAAG- --CCAAU-AA |--------- -UGGUUUA-- 1321 -GGUAGUAGG UU-UA(UUAA GAGU------ ---------- ---------- ------)UAA 1381 ACCUA|---- GCCAA--CGA U|CCAUA-AU CG|--AUAAU (GAAA--)GU UAGAACGAU| 1441 CACGUU-GAC UC(UGAAA-- UA-)UAGUCA A|UAUCU--( au-a-)--AG AUA----C-A 1501 GCA|GUG-AG GAAUAUUGGA C-AAUGAUC( ---------- ----GAAA)G AUUGA-UCC| 1561 A|-GUUA-C- UU-AUU---- -AGGAUGAUA --UAUA-AAA (--------- -aua------ 1621 --------)u uuuauu--uU -AUU|ua--- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- -----u-aaa 1741 uauuaaauau uuauaauaau aauaauaaua auauau-aua uauaaauuga uuaaaaauaa 1801 aauccauaaa uaauuaaaau aaugauauua auuaccauau auauuuu-ua uauggauaua 1861 uauauuaaua auaauauuaa uuuuauuauu auuaauaaua uauuuuaaua GUCCU|-GAC 1921 -UAA-U--AU UUGU-G(-CC AGCAGUC-GC -GGU-AA)-C ACAAAG|--- -AGG-GCG-- 1981 AGCGU-UAAU CAU--AAU-- ---GGU|UUA AAGGAUCCGU -AGAAUG|AA UUAUA----- 2041 |--------- ---------- -------(-- ----uau)-- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- UAUAAUU-UA 2281 G-----AGUU -AA-UAaaau -UAAUU--AA -----|AGAA UUAUAA-UAG ---UAAAG(A 2341 UGAAA)UAAU AAU---AAUA AUUA-UAA-G ACU------- ----AAUAUA -UGU(-GAAA 2401 -)AU|A---- ----UUAAUU A-AAUAU-U- AA---CUGAC AUU--GAGGG AUUAA-AACU 2461 A-GAG---UA GCGAAACGG( AUUCGAUAC) CCGU-GUAG| -UUCU-AGU- AGUAAA-CUA 2521 U--GAAU-AC |AA|UUAUUU AUAAUA(-ua uau------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---)uauaUA UAAAUAA-UA AAU(GAAA)A UG-AAAGUAU 2701 U-C|--C|AC C-UGAA-GAG UACGUUA(-- -GCAA--)UA AUG--AAACU CAAAACAA-U 2761 AG|ACGGUU- ACAGAC---U UAAGCAGU|G GAGCAUGU-U |AUUUAA-UU CG(AUAAUCC 2821 A--------- ----)CGACU A-ACCUUACC AUAUUUUGAA uauuauaa-- ---uaauua- 2881 (--------u ua-)-uaauu a--------- -------<-- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ->uua-uauu a--C---AGG CGU-UA|CA- 3121 |UU|-GU--U |G------UC UU-UA|G-UU CGU-|GCU(G --CAA)AGUU UUAGA(U--- 3181 AAU)GUUCAU A-AACGAACA AAA-CUCCAU auauauaau- uuuaauua-- -----(uaua 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|-uaauu uuauauua-- ----uuu-au (-uaa-u)au aaa---ga-- 3781 ------AA-G GAAUUA-AGA C-AAAUCAUA A|UGAU|CCU UAU------- ---------A 3841 A-U-AU-GGG UA-AUA--GA -CGUGCUAUA AU--AAAAUG A-UAAU-AAA AU--UAUau- 3901 aaaa(--- -----)uuuu -UAAUA-UAU UUUU-UUAUU AUA-UAUUAA 4021 ---------- -----UAUCA --AUUAU-AA U-C(------ ---------- ---------- 4081 ---------- ---------- UGAAAu-uc) G-AU-U--AU -A--UGAAA- -AAAGAAUUG 4141 C-U--AGUAA UACGUAAA(- UUAGU-AU-- --)GUUACGG U-GAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -UAU--U-CU 4261 AACUGU-UU- CGCACUAA-U -CACUCAUCA G-GCG--UUG AAA-CAUAUU AUU------- 4321 ---------- ---------- ---------- ---------- ---------< ---------a 4381 ucuua-uuau uuauauaaua uuuuuuaaua aau(auua)a uaauuauuaa uuuauauuua 4441 uuuauaucag a--------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------a auaauAUGAA UUAA-UGC-G AAGUUGAAAU ACAGUUAC-C GUA-GG(GGA 4621 -A)CCU-GC- GGUGGGCUUA ---------| uaaauaucuu aaauauucuu aca~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS mt.S.cer.2 5213 bp RNA RNA 11-JAN-191 DEFINITION Mitochondrion Saccharomyces cerevisiae. ACCESSION No information KEYWORDS No information. SOURCE Mitochondrion Saccharomyces cerevisiae. ORGANISM Mitochondrion Saccharomyces cerevisiae. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: X07800 DEFINITION Yeast mitochondrial 15S rRNA (777-3A) SOURCE yeast ORGANISM Mitochondrion Saccharomyces cerevisiae Eukaryota; Plantae; Thallobionta; Eumycota; Hemiascomycetes; Endomycetales; Saccharomycetaceae. REFERENCE 1 (bases 1 to 1651) AUTHORS Weiss-Brummer,B. TITLE Direct Submission JOURNAL Submitted (25-APR-1988) Weiss-Brummer B., Institut fuer Genetik u. Mikrobiologie der Universitaet Muenchen, Maria-Ward-Str. 1a, 8000 Muenchen 19, FRG. REFERENCE 2 (bases 1 to 1651) AUTHORS Huettenhofer,A., Sakai,H. and Weiss-Brummer,B. TITLE Site specific AT-cluster insertions in the mitochondrial 15S rRNA gene of the yeast S. cerevisiae JOURNAL Nucleic Acids Res. 16, 8665-8674 (1988) FEATURES Location/Qualifiers source 1..1651 /organism="Saccharomyces cerevisiae" /mitochondrion /strain="777-3A" rRNA 1..1651 /note="15S rRNA" BASE COUNT 698 a 145 c 205 g 603 t 3562 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ----|----- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------a guaaaaaauu uauaaGAAUA 661 (UGA-)U-GU U|GGUUC-AG AUUAAGCGCU -A-AAUA-AG |GA-CA--UG ACAC-A-UGC 721 -GAAUCA-UA CGuuu|auua uu-------- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- ---------- --gauaa--- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- -gauaaua|a 961 aua-U-GU|G GUGUAAACGU GAGUAA-uuU U|AUUAGGAA --UUaauGAA CUAUA-GAAU 1021 AAGc------ -------(ua aa-u)----- ---------a CUUAAUA--- ---------- 1081 ---------- ---------- ---------- ---------- --uauuauua uauaaa(aau 1141 aa---)uuua uauaauaaaa a--(----)- ----ggauau auau(aua-) auauauauuu 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ------AUCU AUAGUCAAG- --CCAAU-AA |--------- -UGGUUUA-- 1321 -GGUAGUAGG UU-UA(UUAA GAGU------ ---------- ---------- ------)UAA 1381 ACCUA|---- GCCAA--CGA U|CCAUA-AU CG|--AUAAU (GAAA--)GU UAGAACGAU| 1441 CACGUU-GAC UC(UGAAA-- UA-)UAGUCA A|UAUCU--( au-a-)--AG AUA----C-A 1501 GCA|GUG-AG GAAUAUUGGA C-AAUGAUC( ---------- ----GAAA)G AUUGA-UCC| 1561 A|-GUUA-C- UU-AUU---- -AGGAUGAUA --UAUA-AAA (--------- -aua------ 1621 --------)u uuuauu--uU -AUU|ua--- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- -----u-aaa 1741 uauuaaauau uuauaauaau aauaauaaua auauau-aua uauaaauuga uuaaaaauaa 1801 aauccauaaa uaauuaaaau aaugauauua auuaccauau auauuuuuua uauggauaua 1861 uauauuaaua auaauauuaa uuuuauuauu auuaauaaua uauuuuaaua GUCCU|-GAC 1921 -UAA-U--AU UUGU-G(-CC AGCAGUC-GC -GGU-AA)-C ACAAAG|--- -AGG-GCG-- 1981 AGCGU-UAAU CAU--AAU-- ---GGU|UUA AAGGAUCCGU -AGAAUG|AA UUAUA----- 2041 |--------- ---------- -------(-- ----uau)-- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- UAUAAUU-UA 2281 G-----AGUU -AA-UAaaau aUAAUU--AA -----|AGAA UUAUAA-UAG ---UAAAG(A 2341 UGAAA)UAAU AAU---AAUA AUUA-UAA-G ACU------- ----AAUAUA -UGU(-GAAA 2401 -)AU|A---- ----UUAAUU A-AAUAU-U- AA---CUGAC AUU--GAGGG AUUAA-AACU 2461 A-GAG---UA GCGAAACGG( AUUCGAUAC) CCGU-GUAG| -UUCU-AGU- AGUAAA-CUA 2521 U--GAAU-AC |AA|UUAUUU AUAAUA(-ua uau------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---)uauaUA UAAAUAA-UA AAU(GAAA)A UG-AAAGUAU 2701 U-C|--C|AC C-UGAA-GAG UACGUUA(-- -GCAA--)UA AUG--AAACU CAAAACAA-U 2761 AG|ACGGUU- ACAGAC---U UAAGCAGU|G GAGCAUGU-U |AUUUAA-UU CG(AUAAUCC 2821 A--------- ----)CGACU A-ACCUUACC AUAUUUUGAA uauuauaa-- ---uaauua- 2881 (--------u ua-)-uaauu a--------- -------<-- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ->uua-uauu a--C---AGG CGU-UA|CA- 3121 |UU|-GU--U |G------UC UU-UA|G-UU CGU-|GCU(G --CAA)AGUU UUAGA(U--- 3181 AAU)GUUCAU A-AACGAACA AAA-CUCCAU auauauaau- uuuaauua-- -----(uaua 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|-uaauu uuauauua-- ----uuu-au (-uaa-u)au aaa---ga-- 3781 ------AA-G GAAUUA-AGA C-AAAUCAUA A|UGAU|CCU UAU------- ---------A 3841 A-U-AU-GGG UA-AUA--GA -CGUGCUAUA AU--AAAAUG A-UAAU-AAA AU--UAUau- 3901 aaaa(--- -----)uuuu -UAAUA-UAU UUUU-UUAUU AUA-UAUUAA 4021 ---------- -----UAUCA --AUUAU-AA U-C(------ ---------- ---------- 4081 ---------- ---------- UGAAAu-uc) G-AU-U--AU -A--UGAAA- -AAAGAAUUG 4141 C-U--AGUAA UACGUAAA(- UUAGU-AU-- --)GUUACGG U-GAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -UAU--U-CU 4261 AACUGU-UU- CGCACUAA-U -CACUCAUCA C-GCG--UUG AAA-CAUAUU AUU------- 4321 ---------- ---------- ---------- ---------- ---------< ---------a 4381 ucuua-uuau uuauauaaua uuuuuuaaua aau(auua)a uaauuauuaa uuuauauuua 4441 uuuauaucag a--------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------a auaauAUGAA UUAA-UGC-G AAGUUGAAAU ACAGUUAC-C GUA-GG(GGA 4621 -A)CCU-GC- GGUGGGCUUA ---------| uaaauaucuu aaauauucuu aca~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS mt.S.cer.3 5213 bp RNA RNA 11-JAN-191 DEFINITION Mitochondrion Saccharomyces cerevisiae. ACCESSION No information KEYWORDS No information. SOURCE Mitochondrion Saccharomyces cerevisiae. ORGANISM Mitochondrion Saccharomyces cerevisiae. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: X14966 DEFINITION Yeast mitochondrial 15S ribosomal RNA gene with ochre suppressor mutation MSU1 SOURCE yeast ORGANISM Mitochondrion Saccharomyces cerevisiae Eukaryota; Plantae; Thallobionta; Eumycota; Hemiascomycetes; Endomycetales; Saccharomycetaceae. REFERENCE 1 (bases 1 to 1998) AUTHORS Fox,T.D. TITLE Direct Submission JOURNAL Submitted (11-APR-1989) Fox T.D., Cornell University, Biotechnology Building, Genetics & Development, Ithaca NY 14853-2703, U S A. REFERENCE 2 (bases 1 to 1998) AUTHORS Shen,Z. and Fox,T.D. TITLE Substitution of an invariant nucleotide at the base of the highly conserved '530-loop' of 15S rRNA causes suppression of yeast mitochondrial ochre mutations JOURNAL Nucleic Acids Res. 17, 4535-4539 (1989) COMMENT The sequence overlaps with that reported by Huettenhofer et. al. in Nucl. Acids Res. 16:8665-8674(1988) X07799, X07800. Data kindly reviewed (19-Jul-1989) by Fox T.D. NCBI gi: 14221 FEATURES Location/Qualifiers source 1..1998 /organism="Saccharomyces cerevisiae" /mitochondrion /strain="V25T-R5" rRNA 251..1901 /note="15S ribosomal RNA" misc_feature 883 /note="MSU1 suppressor mutation" BASE COUNT 699 a 144 c 205 g 603 t 3562 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ----|----- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------a guaaaaaauu uauaaGAAUA 661 (UGA-)U-GU U|GGUUC-AG AUUAAGCGCU -A-AAUA-AG |GA-CA--UG ACAC-A-UGC 721 -GAAUCA-UA CGuuu|auua uu-------- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- ---------- --gauaa--- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- -gauaaua|a 961 aua-U-GU|G GUGUAAACGU GAGUAA-uuU U|AUUAGGAA --UUaauGAA CUAUA-GAAU 1021 AAGc------ -------(ua aa-u)----- ---------a CUUAAUA--- ---------- 1081 ---------- ---------- ---------- ---------- --uauuauua uauaaa(aau 1141 aa---)uuua uauaauaaaa a--(----)- ----ggauau auau(aua-) auauauauuu 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ------AUCU AUAGUCAAG- --CCAAU-AA |--------- -UGGUUUA-- 1321 -GGUAGUAGG UU-UA(UUAA GAGU------ ---------- ---------- ------)UAA 1381 ACCUA|---- GCCAA--CGA U|CCAUA-AU CG|--AUAAU (GAAA--)GU UAGAACGAU| 1441 CACGUU-GAC UC(UGAAA-- UA-)UAGUCA A|UAUCU--( au-a-)--AG AUA----C-A 1501 GCA|GUG-AG GAAUAUUGGA C-AAUGAUC( ---------- ----GAAA)G AUUGA-UCC| 1561 A|-GUUA-C- UU-AUU---- -AGGAUGAUA --UAUA-AAA (--------- -aua------ 1621 --------)u uuuauu--uU -AUU|ua--- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- -----u-aaa 1741 uauuaaauau uuauaauaau aauaauaaua auauau-aua uauaaauuga uuaaaaauaa 1801 aauccauaaa uaauuaaaau aaugauauua auuaccauau auauuuuuua uauggauaua 1861 uauauuaaua auaauauuaa uuuuauuauu auuaauaaua uauuuuaaua GUCCU|-GAC 1921 -UAA-U--AU UUGU-A(-CC AGCAGUC-GC -GGU-AA)-C ACAAAG|--- -AGG-GCG-- 1981 AGCGU-UAAU CAU--AAU-- ---GGU|UUA AAGGAUCCGU -AGAAUG|AA UUAUA----- 2041 |--------- ---------- -------(-- ----uau)-- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- UAUAAUU-UA 2281 G-----AGUU -AA-UAaaau aUAAUU--AA -----|AGAA UUAUAA-UAG ---UAAAG(A 2341 UGAAA)UAAU AAU---AAUA AUUA-UAA-G ACU------- ----AAUAUA -UGU(-GAAA 2401 -)AU|A---- ----UUAAUU A-AAUAU-U- AA---CUGAC AUU--GAGGG AUUAA-AACU 2461 A-GAG---UA GCGAAACGG( AUUCGAUAC) CCGU-GUAG| -UUCU-AGU- AGUAAA-CUA 2521 U--GAAU-AC |AA|UUAUUU AUAAUA(-ua uau------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---)uauaUA UAAAUAA-UA AAU(GAAA)A UG-AAAGUAU 2701 U-C|--C|AC C-UGAA-GAG UACGUUA(-- -GCAA--)UA AUG--AAACU CAAAACAA-U 2761 AG|ACGGUU- ACAGAC---U UAAGCAGU|G GAGCAUGU-U |AUUUAA-UU CG(AUAAUCC 2821 A--------- ----)CGACU A-ACCUUACC AUAUUUUGAA uauuauaa-- ---uaauua- 2881 (--------u ua-)-uaauu a--------- -------<-- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ->uua-uauu a--C---AGG CGU-UA|CA- 3121 |UU|-GU--U |G------UC UU-UA|G-UU CGU-|GCU(G --CAA)AGUU UUAGA(U--- 3181 UAA)GUUCAU A-AACGAACA AAA-CUCCAU auauauaau- uuuaauua-- -----(uaua 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|-uaauu uuauauua-- ----uuu-au (-uaa-u)au aaa---ga-- 3781 ------AA-G GAAUUA-AGA C-AAAUCAUA A|UGAU|CCU UAU------- ---------A 3841 A-U-AU-GGG UA-AUA--GA -CGUGCUAUA AU--AAAAUG A-UAAU-AAA AU--UAUau- 3901 aaaa(--- -----)uuuu -UAAUA-UAU UUUU-UUAUU AUA-UAUUAA 4021 ---------- -----UAUGA --AUUAU-AA U-C(------ ---------- ---------- 4081 ---------- ---------- UGAAAu-uc) G-AU-U--AU -A--UGAAA- -AAAGAAUUG 4141 C-U--AGUAA UACGUAAA(- UUAGU-AU-- --)GUUACGG U-GAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -UAU--U-CU 4261 AACUGU-UU- CGCACUAA-U -CACUCAUCA C-GCG--UUG AAA-CAUAUU AUU------- 4321 ---------- ---------- ---------- ---------- ---------< ---------a 4381 ucuua-uuau uuauauaaua uuuuuuaaua aau(auua)a uaauuauuaa uuuauauuua 4441 uuuauaucag a--------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------a auaauAUGAA UUAA-UGC-G AAGUUGAAAU ACAGUUAC-C GUA-GG(GGA 4621 -A)CCU-GC- GGUGGGCUUA ---------| uaaauaucuu aaauauucuu aca~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS mt.S.cer.4 5213 bp RNA RNA 11-JAN-191 DEFINITION Mitochondrion Saccharomyces cerevisiae. ACCESSION No information KEYWORDS No information. SOURCE Mitochondrion Saccharomyces cerevisiae. ORGANISM Mitochondrion Saccharomyces cerevisiae. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: V00704 DEFINITION Yeast mitochondrial gene encoding the 15S rRNA. SOURCE yeast ORGANISM Mitochondrion Saccharomyces cerevisiae Eukaryota; Plantae; Thallobionta; Eumycota; Hemiascomycetes; Endomycetales; Saccharomycetaceae. REFERENCE 1 (bases 1 to 1826) AUTHORS Li,M., Tzagoloff,A., Underbrink-Lyon,K. and Martin,N.C. TITLE identification of the paromomycin-resistance mutation in the 15 s rrna gene of yeast mitochondria JOURNAL J. Biol. Chem. 257, 5921-5928 (1982) COMMENT NCBI gi: 13545 FEATURES Location/Qualifiers source 1..1826 /organism="Saccharomyces cerevisiae" /mitochondrion rRNA 101..1786 /note="15S ribosomal RNA" mutation 1614 /note="C is G in paromomycin-resistant mutant" BASE COUNT 707 a 157 c 222 g 600 t 3527 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ----|----- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------a guaaaaaauu uauaaGAAUA 661 (UGA-)U-GU U|GGUUC-AG AUUAAGCGCU -A-AAUA-AG |GA-CA--UG ACGC-A-UAC 721 -GAGUCA-UA CGuuu|auua uu-------- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- ---------- --gauaa--- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- -gauaaua|a 961 aua-U-GU|G GUGUAAACGU GAGUAA-uuU U|AUUAGGAA --UUaauGAA CUAUA-GAAU 1021 AAGc------ -------(ua aa-u)----- ---------a CUUAAUA--- ---------- 1081 ---------- ---------- ---------- ---------- --uauuauua uauaaa(aau 1141 aa---)uuua uauaauaaaa a--(----)- ----ggauau auau(aua-) auauauauuu 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ------AUCU AUAGUCAAG- --CCAAU-AA |--------- -UGGUUUA-- 1321 -GGUAGUAGG UU-UA(UUAA GAGU------ ---------- ---------- ------)UAA 1381 ACCUA|---- GCCAA--CGA U|CCAUA-AU CG|--AUAAU (GAAA--)GU UAGAACGAU| 1441 CACGUU-GAC UC(UGAAA-- UA-)UAGUCA A|UAUCU--( au-a-)--AG AUA----C-A 1501 GCA|GUG-AG GAAUAUUGGA C-AAUGAUC( ---------- ----GAAA)G AUUGA-UCC| 1561 A|-GUUA-C- UU-AUU---- -AGGAUGAUA --UAUA-AAA (--------- -aua------ 1621 --------)u uuuauu--uU -AUU|uaguu ccggggcccg gccacggaac cggacccg-- 1681 ---------- ---------- ---------- ---------- ---------a aaggag-aaa 1741 uauuaaauau uuauaauaau aauaauaaua auauau-aua uauaaauuga uuaaaaauaa 1801 aauccauaaa uaauuaaaau aaugauauua auuaccauau auauuuu--a uauggauaua 1861 uauauuaaua auaauauuaa uuu-auuauu auuaauaaua uauuuuaaua GUCCU|-GAC 1921 -UAA-U--AU UUGU-G(-CC AGCAGUC-GC -GGU-AA)-C ACAAAG|--- -AGG-GCG-- 1981 AGCGU-UAAU CAU--AAU-- ---GGU|UUA AAGGAUCCGU -AGAAUG|AA UUAUA----- 2041 |--------- ---------- -------(-- ----uau)-- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- UAUAAUU-UA 2281 G-----AGUU -AA-UAaaau -UAAUU--AA -----|AGAA UUAUAA-UAG ---UAAAG(A 2341 UGAAA)UAAU AAU---AAUA AUUA-UAA-G ACU------- ----AAUAUA -UGU(-GAAA 2401 -)AU|A---- ----UUAAUU A-AAUAU-U- AA---CUGAC AUU--GAGGG AUUAA-AACU 2461 A-GAG---UA GCGAAACGG( AUUCGAUAC) CCGU-GUAG| -UUCU-AGU- AGUAAA-CUA 2521 U--GAAU-AC |AA|UUAUUU AUAAUA(-ua uau------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---)uauaUA UAAAUAA-UA AAU(GAAA)A UG-AAAGUAU 2701 U-C|--C|AC C-UGAA-GAG UACGUUA(-- -GCAA--)UA AUG--AAACU CAAAACAA-U 2761 AG|ACGGUU- ACAGAC---U UAAGCAGU|G GAACAUGU-U |AUUUAA-UU CG(AUAAUCC 2821 A--------- ----)CGACU A-ACUUUACC AUAUUUUGAA uauuauaa-- ---uaauua- 2881 (--------u ua-)-uaauu a--------- -------<-- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ->uua-uauu a--C---AGG CGU-UA|CA- 3121 |UU|-GU--U |G------UC UU-UA|G-UU CGU-|GCU(G --CAA)AGUU UUAGA(UUA- 3181 AAU)GUGCAU A-AACGACCA AAA-CUCCAU auauauaau- uuuuuaau-- -----(auau 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|-auuaa aaauauua-- ----uuu-au (-uaa-u)au aaa---ga-- 3781 ------AA-G GAAUUA-AGA C-AAAUCAUA A|UGAU|CCU UAU------- ---------A 3841 A-U-AU-GGG UA-AUA--GA -CGUGCUAUA AU--AAAAUG A-UAAU-AAA AU--UAUau- 3901 aaaa(--- -----)uuuu -UAAUA-UAU UUUU-UUAUU AUA-UAUUAA 4021 ---------- -----UAUGA --AUUAU-AA U-C(------ ---------- ---------- 4081 ---------- ---------- UGAAAu-uc) G-AU-U--AU -A--UGAAA- -AAAGAAUUG 4141 C-U--AGUAA UACGUAAA(- UUAGU-AU-- --)GUUACGG U-GAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -UAU--U-CU 4261 AACUGU-UU- CGCACUAA-U -CACUCAUCA C-GCG--UUG AAA-CAUAUU AUU------- 4321 ---------- ---------- ---------- ---------- ---------< ---------a 4381 ucuua-uuau uuauauaaua uuuuuuaaua aau(auua)a uaauuauuaa uuuauauuua 4441 uuuauaucag a--------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------a auaauAUGAA UUAA-UGC-G AAGUUGAAAU ACAGUUAC-C GUA-GG(GGA 4621 -A)CCU-GC- GGUGGGCUUA ---------| uaaauaucuu aaauauucuu aca~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS mt.S.cer.5 5213 bp RNA RNA 08-JAN-1984 DEFINITION mitochondria,Saccharomyces cerevisiae(Santa Cruz version). ACCESSION No information KEYWORDS No information. SOURCE mitochondria,Saccharomyces cerevisiae(Santa Cruz version). ORGANISM mitochondria,Saccharomyces cerevisiae(Santa Cruz version). REFERENCE 1 (bases 1 to 100314) AUTHORS No information JOURNAL 5921(1982),Santa Cruz modified 3/8/84 STANDARD No information COMMENTS Organism information Culture collection: ? Sequence information (bases 1 to 5213) Corresponding GenBank entry: AJ011856 Phylo:Mitochondria,Fungi,Saccharomyces BASE COUNT 729 a 157 c 223 g 617 t 3487 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ----|----- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------a guaaaaaauu uauaaGAAUA 661 (UGA-)U-GU U|GGUUC-AG AUUAAGCGCU -A-AAUA-AG |GA-CA--UG ACGC-A-UAC 721 -GAGUCA-UA CGuuu|auua uu-------- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- ---------- --gauaa--- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- -gauaaua|a 961 aua-U-GU|G GUGUAAACGU GAGUAA-uuU U|AUUaGGAA --UUaauGAA CUAUA-GAAU 1021 AAGc------ -------(ua aa-u)----- ---------a CUUAAUA--- ---------- 1081 ---------- ---------- ---------- ---------- --uauuauua uauaaa(aau 1141 aa---)uuua uauaauaaaa a--(----)- ----ggauau auau(aua-) auauauauuu 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ------AUCU AUAGUCAAG- --CCAAU-AA |--------- -UGGUUUA-- 1321 -GGUAGUAGG UU-UA(UUAA GAGU------ ---------- ---------- ------)UAA 1381 ACCUA|---- GCCAA--CGA U|CCAUA-AU CG|--AUAAU (GAAA--)GU UAGAACGAU| 1441 CACGUU-GAC UC(UGAAA-- UA-)UAGUCA A|UAUCU--( au-a-)--AG AUA----C-A 1501 GCA|GUG-AG GAAUAUUGGA C-AAUGAUC( ---------- ----GAAA)G AUUGA-UCC| 1561 A|-GUUA-C- UU-AUU---- -AGGAUGAUA --UAUA-AAA (--------- -aua------ 1621 --------)U UUUAUu--uU -AUU|uaguu ccggggcccg gccacggaac cggacccg-- 1681 ---------- ---------- ---------- ---------- ---------a aaggag-aaa 1741 uauuaaauau uuauaauaau aauaauaaua auauau-aua uauaaauuga uuaaaaauaa 1801 aauccauaaa uaauuaaaau aaugauauua auuaccauau auauuuu--a uauggauaua 1861 uauauuaaua auaauauuaa uuu-auuauu auuaauaaua uauuuuaauA GUCCU|-GAC 1921 -UAA-U--AU UUGU-G(-CC AGCAGUC-GC -GGU-AA)-C ACAAAG|--- -AGG-GCG-- 1981 AGCGU-UAAU CAU--AAU-- ---GGU|UUA AAGGAUCCGU -AGAAUG|AA UUAUA----- 2041 |--------- ---------- -------(-- ----uau)-- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- UAUAAUU-UA 2281 G-----AGUU -AA-UAAAAU -UAAUU--AA -----|AGAA UUAUAA-UAG ---UAAAG(A 2341 UGAAA)UAAU AAU---AAUA AUUA-UAA-G ACU------- ----AAUAUA -UGU(-GAAA 2401 -)AU|A---- ----UUAAUU A-AAUAU-U- AA---CUGAC AUU--GAGGG AUUAA-AACU 2461 A-GAG---UA GCGAAACGG( AUUCGAUAC) CCGU-GUAG| -UUCU-AGU- AGUAAA-CUA 2521 U--GAAU-AC |AA|UUAUUU AUAaua(-ua uau------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---)uauaUA UAAAUAA-UA AAU(GAAA)A UG-AAAGUAU 2701 U-C|--C|AC C-UGAA-GAG UACGUUA(-- -GCAA--)UA AUG--AAACU CAAAACAA-U 2761 AG|ACGGUU- ACAGAC---U UAAGCAGU|G GAACAUGU-U |AUUUAA-UU CG(AUAAUCC 2821 A--------- ----)CGACU A-ACUUUACC AUAUUUUGAA uauuauaa-- ---uaauua- 2881 (--------u ua-)-uaauu a--------- -------<-- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ->uua-uauu a--C---AGG CGU-UA|CA- 3121 |UU|-GU--U |G------UC UU-UA|G-UU CGU-|GCU(G --CAA)AGUU UUAGA(UUA- 3181 AAU)GUGCAU A-AACGAGCA AAA-CUCCAU auauauaau- uuuuuaau-- -----(auau 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|-auuaa aaauauua-- ----uuu-au (-uaa-u)au aaa---ga-- 3781 ------AA-G GAAUUA-AGA C-AAAUCAUA A|UGAU|CCU UAU------- ---------A 3841 A-U-AU-GGG UA-AUA--GA -CGUGCUAUA AU--AAAAUG A-UAAU-AAA AU--UAuau- 3901 aaaa(--- -----)uuuu -UAAUA-UAU UUUU-UUAUU AUA-UAUUAA 4021 ---------- -----UAUGA --AUUAU-AA U-C(------ ---------- ---------- 4081 ---------- ---------- UGAAAu-uc) G-AU-U--AU -A--UGAAA- -AAAGAAUUG 4141 C-U--AGUAA UACGUAAA(- UUAGU-AU-- --)GUUACGG U-GAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -UAU--U-CU 4261 AACUGU-UU- CGCACUAA-U -CACUCAUCA C-GCG--UUG AAA-CAUauu auu------- 4321 ---------- ---------- ---------- ---------- ---------< ---------a 4381 ucuua-uuau uuauauaaua uuuuuuaaua aau(auua)a uaauuauuaa uuuauauuua 4441 uuuauaucag a--------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------a auaauAUGAA UUAA-UGC-G AAGUUGAAAU ACAGUUAC-C GUA-GG(GGA 4621 -A)CCU-GC- GGUGGGCUUA ---------| UAAAUAUCUU AAAUAUUCUU ACAUAAAUAU 4681 UAAUUCAAAU AUUAAUAUAA AUAUUAAUAU UAA~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS mt.S.cer.6 5213 bp RNA RNA 11-JAN-191 DEFINITION Mitochondrion Saccharomyces cerevisiae. ACCESSION No information KEYWORDS No information. SOURCE Mitochondrion Saccharomyces cerevisiae. ORGANISM Mitochondrion Saccharomyces cerevisiae. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: J01459 V00704 DEFINITION yeast (s.cerevisiae) mt 15s rrna gene with paromomycin-resistant mutation ds80. SOURCE yeast (saccharomyces cerevisiae; omega(+) strains d273-10b, ds80 (from d273-10b/a121), kl14-4a) mitochondrial dna, clone pym132 (see comment). ORGANISM Mitochondrion Saccharomyces cerevisiae Eukaryota; Fungi; Eumycota; Hemiascomycetes; Endomycetales; Saccharomycetaceae. REFERENCE 1 (bases 256 to 2081) AUTHORS Li,M., Tzagoloff,A., Underbrink-Lyon,K. and Martin,N.C. TITLE identification of the paromomycin-resistance mutation in the 15 s rrna gene of yeast mitochondria JOURNAL J. Biol. Chem. 257, 5921-5928 (1982) REFERENCE 2 (bases 1 to 412) AUTHORS Osinga,K.A. and Tabak,H.F. TITLE initiation of transcription of genes for mitochondrial ribosomal rna in yeast: comparison of the nucleotide sequence around the 5'-ends of both genes reveals a homologous stretch of 17 nucleotides JOURNAL Nucleic Acids Res. 10, 3617-3626 (1982) COMMENT ds80 is a paromomycin-resistant strain that contains only the par locus. The mutation in the 15S rRNA gene indicates that the par locus is a genetic marker of the gene [1]. [2] also sequenced the 5' end of the 21S rRNA gene. Complete source information: yeast (saccharomyces cerevisiae; omega(+) strains d273-10b [1], ds80 (from d273-10b/a121) [1], kl14-4a [2]) mitochondrial dna, clone pym132 [1]. NCBI gi: 343907 FEATURES Location/Qualifiers unsure 23..27 /note="[2] uncertain about length of g-tract" misc_RNA 279..>2041 /note="15S rRNA precursor (15.5S) [2]" rRNA 356..2041 /note="15S rRNA" mutation 1869 /note="c in wild-type; g in ds80" source 1..2081 /organism="Saccharomyces cerevisiae" /mitochondrion BASE COUNT 707 a 158 c 221 g 600 t 3527 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ----|----- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------a guaaaaaauu uauaaGAAUA 661 (UGA-)U-GU U|GGUUC-AG AUUAAGCGCU -A-AAUA-AG |GA-CA--UG ACGC-A-UAC 721 -GAGUCA-UA CGuuu|auua uu-------- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- ---------- --gauaa--- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- -gauaaua|a 961 aua-U-GU|G GUGUAAACGU GAGUAA-uuU U|AUUAGGAA --UUaauGAA CUAUA-GAAU 1021 AAGc------ -------(ua aa-u)----- ---------a CUUAAUA--- ---------- 1081 ---------- ---------- ---------- ---------- --uauuauua uauaaa(aau 1141 aa---)uuua uauaauaaaa a--(----)- ----ggauau auau(aua-) auauauauuu 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ------AUCU AUAGUCAAG- --CCAAU-AA |--------- -UGGUUUA-- 1321 -GGUAGUAGG UU-UA(UUAA GAGU------ ---------- ---------- ------)UAA 1381 ACCUA|---- GCCAA--CGA U|CCAUA-AU CG|--AUAAU (GAAA--)GU UAGAACGAU| 1441 CACGUU-GAC UC(UGAAA-- UA-)UAGUCA A|UAUCU--( au-a-)--AG AUA----C-A 1501 GCA|GUG-AG GAAUAUUGGA C-AAUGAUC( ---------- ----GAAA)G AUUGA-UCC| 1561 A|-GUUA-C- UU-AUU---- -AGGAUGAUA --UAUA-AAA (--------- -aua------ 1621 --------)u uuuauu--uU -AUU|uaguu ccggggcccg gccacggaac cggacccg-- 1681 ---------- ---------- ---------- ---------- ---------a aaggag-aaa 1741 uauuaaauau uuauaauaau aauaauaaua auauau-aua uauaaauuga uuaaaaauaa 1801 aauccauaaa uaauuaaaau aaugauauua auuaccauau auauuuu--a uauggauaua 1861 uauauuaaua auaauauuaa uuu-auuauu auuaauaaua uauuuuaaua GUCCU|-GAC 1921 -UAA-U--AU UUGU-G(-CC AGCAGUC-GC -GGU-AA)-C ACAAAG|--- -AGG-GCG-- 1981 AGCGU-UAAU CAU--AAU-- ---GGU|UUA AAGGAUCCGU -AGAAUG|AA UUAUA----- 2041 |--------- ---------- -------(-- ----uau)-- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- UAUAAUU-UA 2281 G-----AGUU -AA-UAaaau -UAAUU--AA -----|AGAA UUAUAA-UAG ---UAAAG(A 2341 UGAAA)UAAU AAU---AAUA AUUA-UAA-G ACU------- ----AAUAUA -UGU(-GAAA 2401 -)AU|A---- ----UUAAUU A-AAUAU-U- AA---CUGAC AUU--GAGGG AUUAA-AACU 2461 A-GAG---UA GCGAAACGG( AUUCGAUAC) CCGU-GUAG| -UUCU-AGU- AGUAAA-CUA 2521 U--GAAU-AC |AA|UUAUUU AUAAUA(-ua uau------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---)uauaUA UAAAUAA-UA AAU(GAAA)A UG-AAAGUAU 2701 U-C|--C|AC C-UGAA-GAG UACGUUA(-- -GCAA--)UA AUG--AAACU CAAAACAA-U 2761 AG|ACGGUU- ACAGAC---U UAAGCAGU|G GAACAUGU-U |AUUUAA-UU CG(AUAAUCC 2821 A--------- ----)CGACU A-ACUUUACC AUAUUUUGAA uauuauaa-- ---uaauua- 2881 (--------u ua-)-uaauu a--------- -------<-- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ->uua-uauu a--C---AGG CGU-UA|CA- 3121 |UU|-GU--U |G------UC UU-UA|G-UU CGU-|GCU(G --CAA)AGUU UUAGA(UUA- 3181 AAU)GUGCAU A-AACGACCA AAA-CUCCAU auauauaau- uuuuuaau-- -----(auau 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|-auuaa aaauauua-- ----uuu-au (-uaa-u)au aaa---ga-- 3781 ------AA-G GAAUUA-AGA C-AAAUCAUA A|UGAU|CCU UAU------- ---------A 3841 A-U-AU-GGG UA-AUA--GA -CGUGCUAUA AU--AAAAUG A-UAAU-AAA AU--UAUau- 3901 aaaa(--- -----)uuuu -UAAUA-UAU UUUU-UUAUU AUA-UAUUAA 4021 ---------- -----UAUCA --AUUAU-AA U-C(------ ---------- ---------- 4081 ---------- ---------- UGAAAu-uc) G-AU-U--AU -A--UGAAA- -AAAGAAUUG 4141 C-U--AGUAA UACGUAAA(- UUAGU-AU-- --)GUUACGG U-GAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -UAU--U-CU 4261 AACUGU-UU- CGCACUAA-U -CACUCAUCA C-GCG--UUG AAA-CAUAUU AUU------- 4321 ---------- ---------- ---------- ---------- ---------< ---------a 4381 ucuua-uuau uuauauaaua uuuuuuaaua aau(auua)a uaauuauuaa uuuauauuua 4441 uuuauaucag a--------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------a auaauAUGAA UUAA-UGC-G AAGUUGAAAU ACAGUUAC-C GUA-GG(GGA 4621 -A)CCU-GC- GGUGGGCUUA ---------| uaaauaucuu aaauauucuu aca~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS mt.S.cer.7 5213 bp RNA RNA 06-JUL-1989 DEFINITION Mitochondrion Saccharomyces cerevisiae.; 15S ribosomal RNA; ribosomal RNA. ACCESSION V00702 M25039 KEYWORDS 15S ribosomal RNA; ribosomal RNA. SOURCE Mitochondrion Saccharomyces cerevisiae. ORGANISM Mitochondrion Saccharomyces cerevisiae. REFERENCE 1 (bases 1 to 1826) AUTHORS Sor,F. and Fukuhara,H. TITLE ribosomal RNA of yeast Nucleotide sequence of the gene for the mitochondrial 15S JOURNAL C. R. Acad. Sci., D, Sci. Nat. 291 (12), 933-936 (1980) STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: V00702 BASE COUNT 709 a 154 c 232 g 613 t 3505 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------a guaaaaaauu uauaaGAAUA 661 (UGA-)U-GU U|GUUUC-AG AUUAAGCGCU -A-AAUA-AG |GA-CA--UG ACGC-A-UAC 721 -GAGUCA-UA CGuuu|auua uu-------- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- ---------- --gauaa--- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- -gauaaua|a 961 aua-U-GU|G GUGUAAACGU GAGUAA-uuU U|AUUAGGAA --UUaauGAA CUAUA-GAAU 1021 AAGc------ -------(ua aa-u)----- ---------a CUUAAUA--- ---------- 1081 ---------- ---------- ---------- ---------- --uauuauua uauaaa(aau 1141 aa---)uuua uauaauaaaa a--(----)- ----ggauau auau(aua-) auauauauuu 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ------AUCU AUAGUCAAG- --CCAAU-AA |--------- -UGGUUUA-- 1321 -GGUAGUAGG UU-UA(UUAA GAGU------ ---------- ---------- ------)UAA 1381 ACCUA|---- GCCAA--CGA U|CCAUA-AU CG|--AUAAU (GAAA--)GU UAGAACGAU| 1441 CACGUU-GAC UC(UGAAA-- UA-)UAGUCA A|UAUCU--( au-a-)--AG AUA----C-A 1501 GCA|GUG-AG GAAUAUUGGA C-AAUGAUC( ---------- ----GAAA)G AUUGA-UCC| 1561 A|-GUUA-C- UU-AUU---- -AGGAUGAUA --UAUA-AAA (--------- -aua------ 1621 --------)u uuuauu--uU -AUU|uaguu ccggggcccg gccacggagc cgaacccg-- 1681 ---------- ---------- ---------- ---------- ---------a aaggag-aaa 1741 uauuaaauau uuauaauaau aauaauaaua auauau-aua uauaaauuga uuaaaaauaa 1801 aauccauaaa uaauuaaaau aaugauauua auuaccauau auauuuu--a uauggauaua 1861 uauauuaaua auaauauuaa uuu-auuauu auuaauaaua uauuuuaaua GUCCU|-GAC 1921 -UAA-U--AU UUGU-G(-CC AGCAGUC-GC -GGU-AA)-C ACAAAG|--- -AGG-GCG-- 1981 AGCGU-UAAU CAU--AAU-- ---GGU|UUA AAGGAUCCGU -AGAAUG|AA UUAUA----- 2041 |--------- ---------- -------(-- ----uau)-- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- UAUAAUU-UA 2281 G-----AGUU -AA-UAaaau -UAAUU--AA -----|AGAA UUAUAA-UAG ---UAAAG(A 2341 UGAAA)UAAU AAU---AAUA AUUA-UAA-G ACU------- ----AAUAUA -UGU(-GAAA 2401 -)AU|A---- ----UUAAUU A-AAUAU-U- AA---CUGAC AUU--GAGGG AUUAA-AACU 2461 A-GAG---U- GCGAAACGG( AUUCGAUAU) UCGU-GUAG| UUUCU-AGU- AGUAAA-CUA 2521 U--GAAU-AC |AA|UUAUUU AUAAUA(-ua uau------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---)uauaUA UAAAUAA-UA AAU(GAAA)A UG-AAAGUAU 2701 U-C|--C|AC C-UGAA-GAG UACGUUA(-- -GCAA--)UA AUG--AAACU CAAAACAA-U 2761 AG|ACGGUU- ACAGAC---U UAAGCAGU|G GAACAUGU-U |AUUUAA-UU CG(AUAAUCC 2821 A--------- ----)CGACU A-ACUUUACC AUAUUUUGAA uauuauaa-- ---uaauua- 2881 (--------u ua-)-uaauu a--------- -------<-- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ->uua-uauu a--C---AGG CGU-UA|CA- 3121 |UU|-GU--U |G------UC UU-UA|G-UU CGU-|GCU(G --CAA)AGUU UUAGA(UUA- 3181 AAU)GUGCAU A-AACGAGCA AAA-CUCCAU auauauaau- uuu------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ --auauua-- ----uuu-au (-uaa-u)au aaa---ga-- 3781 ------AA-G GAAUUA-AGA C-AAAUCAUA A|UGAU|CCU UAU------- ---------A 3841 A-U-AU-GGG UA-AUA--GA -CGUGCUAUA AU--AAAAUG A-UAAU-AAA AU--UAUau- 3901 aaaa(--- -----)uuuu -UAAUA-UAU UUUU-UUAUU AUA-UAUUAA 4021 ---------- -----UAUGA --AUUAU-AA U-C(------ ---------- ---------- 4081 ---------- ---------- UGAAAu-uc) G-AU-U--AU -A--UGAAA- -AAAGAAUUG 4141 C-U--AGUAA UACGUAAA(- UUAGU-AU-- --)GUUACGG U-GAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -UAU--U-CU 4261 AACUGU-UU- CGCACUAA-U -CACUCAUCA G-GCG--UUG AAA-CAUAUU AUU------- 4321 ---------- ---------- ---------- ---------- ---------< ---------a 4381 ucuua-uuau uuauauaaua uuuuuuaaua aau(auua)a uaauuauuaa uuuauauuua 4441 uuuauaucag a--------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------a auaauAUGAA UUAA-UGC-G AAGUUGAA-U ACAGUUAC-C GUA-GG(GGA 4621 -A)CCU-GC- GGUGGGCUUA ---------| uaaauaucuu aaauauucuu acauagguau 4681 uaaucuaaau auugaauaug agguguungu agu~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS mt.S.cer.8 5213 bp RNA RNA 15-JAN-1999 DEFINITION Mitochondrion Saccharomyces cerevisiae.; . ACCESSION AJ0118 6 KEYWORDS . SOURCE Mitochondrion Saccharomyces cerevisiae. ORGANISM Mitochondrion Saccharomyces cerevisiae. REFERENCE 1 (bases 1 to 85779) AUTHORS Foury,F., Roganti,T., Lecrenier,N. and Purnelle,B. TITLE The complete sequence of the mitochondrial genome of Saccharomyces cerevisiae JOURNAL FEBS Lett. 440 (3), 325-331 (1998) STANDARD No information REFERENCE 2 (bases 1 to 85779) AUTHORS MIPS. TITLE Direct Submission JOURNAL Submitted (16-DEC-1998) Data collected by MIPS on behalf of the European yeast mitochondrial genome sequencing project. MIPS at the Max-Planck-Institut fuer Biochemie, Am Klopferspitz 18a D-82152 Martinsried, Germany; E-mail: Mewes@mips.biochem.mpg.de STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: AJ011856 BASE COUNT 697 a 144 c 206 g 602 t 3564 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- guaaaaaauu uauaaGAAUA 661 (UGA-)U-GU U|GGUUC-AG AUUAAGCGCU -A-AAUA-AG |GA-CA--UG ACAC-A-UGC 721 -GAAUCA-UA CGuuu|auua uu-------- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- ---------- --gauaa--- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- -gauaaua|a 961 aua-U-GU|G GUGUAAACGU GAGUAA-uuU U|AUUAGGAA --UUaauGAA CUAUA-GAAU 1021 AAGc------ -------(ua aa-u)----- ---------a CUUAAUA--- ---------- 1081 ---------- ---------- ---------- ---------- --uauuauua uauaaa(aau 1141 aa---)uuua uauaauaaaa a--(----)- ----ggauau auau(aua-) auauauauuu 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ------AUCU AUAGUCAAG- --CCAAU-AA |--------- -UGGUUUA-- 1321 -GGUAGUAGG UU-UA(UUAA GAGU------ ---------- ---------- ------)UAA 1381 ACCUA|---- GCCAA--CGA U|CCAUA-AU CG|--AUAAU (GAAA--)GU UAGAACGAU| 1441 CACGUU-GAC UC(UGAAA-- UA-)UAGUCA A|UAUCU--( au-a-)--AG AUA----C-A 1501 GCA|GUG-AG GAAUAUUGGA C-AAUGAUC( ---------- ----GAAA)G AUUGA-UCC| 1561 A|-GUUA-C- UU-AUU---- -AGGAUGAUA --UAUA-AAA (--------- -aua------ 1621 --------)u uuuauu--uU -AUU|ua--- ---------- --uaaauauu ---------- 1681 ---------- ---------- ---------- ---------- ---------- -------aaa 1741 uauu-uaua- --auaauaau aauaauaaua uauauauaua aauugauuaa aaauaaaauc 1801 cauaaauaau uaaaauaaug auauuaauua ccauauauau -uuuuauaug gauauauaua 1861 u-uaauaaua auauua-au- uuu-auuauu auuaauaaua uauuuuaaua GUCCU|-GAC 1921 -UAA-U--AU UUGU-G(-CC AGCAGUC-GC -GGU-AA)-C ACAAAG|--- -AGG-GCG-- 1981 AGCGU-UAAU CAU--AAU-- ---GGU|UUA AAGGAUCCGU -AGAAUG|AA UUAUA----- 2041 |--------- ---------- -------(-- ----uau)-- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- UAUAAUU-UA 2281 G-----AGUU -AA-UAaaau aUAAUU--AA -----|AGAA UUAUAA-UAG ---UAAAG(A 2341 UGAAA)UAAU AAU---AAUA AUUA-UAA-G ACU------- ----AAUAUA -UGU(-GAAA 2401 -)AU|A---- ----UUAAUU A-AAUAU-U- AA---CUGAC AUU--GAGGG AUUAA-AACU 2461 A-GAG---UA GCGAAACGG( AUUCGAUAC) CCGU-GUAG| -UUCU-AGU- AGUAAA-CUA 2521 U--GAAU-AC |AA|UUAUUU AUAAUA(-ua uau------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---)UAUaUA UAAAUAA-UA AAU(GAAA)A UG-AAAGUAU 2701 U-C|--C|AC C-UGAA-GAG UACGUUA(-- -GCAA--)UA AUG--AAACU CAAAACAA-U 2761 AG|ACGGUU- ACAGAC---U UAAGCAGU|G GAGCAUGU-U |AUUUAA-UU CG(AUAAUCC 2821 A--------- ----)CGACU A-ACCUUACC AUAUUUUGAA uauuauaa-- ---uaauua- 2881 (--------u ua-)-uaauu a--------- -------<-- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ->uua-uauu a--C---AGG CGU-UA|CA- 3121 |UU|-GU--U |G------UC UU-UA|G-UU CGU-|GCU(G --CAA)AGUU UUAGA(UUA- 3181 A--)GUUCAU A-AACGAACA AAA-CUCCAU auauauaau- uuuaauua-- -----(uaua 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|-uaauu uuauauua-- ----uuu-au (-uaa-u)au aaa---ga-- 3781 ------AA-G GAAUUA-AGA C-AAAUCAUA A|UGAU|CCU UAU------- ---------A 3841 A-U-AU-GGG UA-AUA--GA -CGUGCUAUA AU--AAAAUG A-UAAU-AAA AU--UAUau- 3901 aaaa(--- -----)uuuu -UAAUA-UAU UUUU-UUAUU AUA-UAUUAA 4021 ---------- -----UAUGA --AUUAU-AA U-C(------ ---------- ---------- 4081 ---------- ---------- UGAAAu-uc) G-AU-U--AU -A--UGAAA- -AAAGAAUUG 4141 C-U--AGUAA UACGUAAA(- UUAGU-AU-- --)GUUACGG U-GAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -UAU--U-CU 4261 AACUGU-UU- CGCACUAA-U -CACUCAUCA C-GCG--UUG AAA-CAUAUU AUU------- 4321 ---------- ---------- ---------- ---------- ---------< ---------a 4381 ucuua-uuau uuauauaaua uuuuuuaaua aau(auua)a uaauuauuaa uuuauauuua 4441 uuuauaucag a--------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------a auaauAUGAA UUAA-UGC-G AAGUUGAAAU ACAGUUAC-C GUA-GG(GGA 4621 -A)CCU-GC- GGUGGGCUUA ---------| uaaauaucuu aaauauucuu aca------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- --------|| ||| // LOCUS mt.S.cer.9 5213 bp RNA RNA 26-MAY-1995 DEFINITION Mitochondrion Saccharomyces cerevisiae.; 15S ribosomal RNA; transfer RNA-Trp. 11 of 19. ACCESSION L36895 M62622 KEYWORDS 15S ribosomal RNA; transfer RNA-Trp. 11 of 19. SOURCE Mitochondrion Saccharomyces cerevisiae. ORGANISM Mitochondrion Saccharomyces cerevisiae. REFERENCE 1 (bases 1 to 4350) AUTHORS de Zamaroczy,M. and Bernardi,G. TITLE Saccharomyces cerevisiae--a review The primary structure of the mitochondrial genome of JOURNAL Gene 47 (2-3), 155-177 (1986) STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: L36895 BASE COUNT 697 a 154 c 222 g 597 t 3543 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------a guaaaaaauu uauaaGAAUA 661 (UGA-)U-GU U|GUUUC-AG AUUAAGCGCU -A-AAUA-AG |GA-CA--UG ACGC-A-UAC 721 -GAGUCA-UA CGuuu|auua uu-------- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- ---------- --gauaa--- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- -gauaaua|a 961 aua-U-GU|G GUGUAAACGU GAGUAA-uuU U|AUUAGGAA --UUaauGAA CUAUA-GAAU 1021 AAGc------ -------(ua aa-u)----- ---------a CUUAAUA--- ---------- 1081 ---------- ---------- ---------- ---------- --uauuauua uauaaa(aau 1141 aa---)uuua uauaauaaaa a--(----)- ----ggauau auau(aua-) auauauauuu 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ------AUCU AUAGUCAAG- --CCAAU-AA |--------- -UGGUUUA-- 1321 -GGUAGUAGG UU-UA(UUAA GAGU------ ---------- ---------- ------)UAA 1381 ACCUA|---- GCCAA--CGA U|CCAUA-AU CG|--AUAAU (GAAA--)GU UAGAACGAU| 1441 CACGUU-GAC UC(UGAAA-- UA-)UAGUCA A|UAUCU--( au-a-)--AG AUA----C-A 1501 GCA|GUG-AG GAAUAUUGGA C-AAUGAUC( ---------- ----GAAA)G AUUGA-UCC| 1561 A|-GUUA-C- UU-AUU---- -AGGAUGAUA --UAUA-AAA (--------- -aua------ 1621 --------)u uuuauu--uU -AUU|uaguu ccggggcccg gccacggagc cgaacccg-- 1681 ---------- ---------- ---------- ---------- ---------a aaggag-aaa 1741 uauuaaauau uuauaauaau aauaauaaua auauau-aua uauaaauuga uuaaaaauaa 1801 aauccauaaa uaauuaaaau aaugauauua auuaccauau auauuuu--a uauggauaua 1861 uauauuaaua auaauauuaa uuu-auuauu auuaauaaua uauuuuaaua GUCCU|-GAC 1921 -UAA-U--AU UUGU-G(-CC AGCAGUC-GC -GGU-AA)-C ACAAAG|--- -AGG-GCG-- 1981 AGCGU-UAAU CAU--AAU-- ---GGU|UUA AAGGAUCCGU -AGAAUG|AA UUAUA----- 2041 |--------- ---------- -------(-- ----uau)-- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- UAUAAUU-UA 2281 G-----AGUU -AA-UAaaau -UAAUU--AA -----|AGAA UUAUAA-UAG ---UAAAG(A 2341 UGAAA)UAAU AAU---AAUA AUUA-UAA-G ACU------- ----AAUAUA -UGU(-GAAA 2401 -)AU|A---- ----UUAAUU A-AAUAU-U- AA---CUGAC AUU--GAGGG AUUAA-AACU 2461 A-GAG---U- GCGAAACGG( AUUCGAUAU) UCGU-GUAG| UUUCU-AGU- AGUAAA-CUA 2521 U--GAAU-AC |AA|UUAUUU AUAAUA(-ua uau------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---)uauaUA UAAAUAA-UA AAU(GAAA)A UG-AAAGUAU 2701 U-C|--C|AC C-UGAA-GAG UACGUUA(-- -GCAA--)UA AUG--AAACU CAAAACAA-U 2761 AG|ACGGUU- ACAGAC---U UAAGCAGU|G GAACAUGU-U |AUUUAA-UU CG(AUAAUCC 2821 A--------- ----)CGACU A-ACUUUACC AUAUUUUGAA uauuauaa-- ---uaauua- 2881 (--------u ua-)-uaauu a--------- -------<-- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ->uua-uauu a--C---AGG CGU-UA|CA- 3121 |UU|-GU--U |G------UC UU-UA|G-UU CGU-|GCU(G --CAA)AGUU UUAGA(UUA- 3181 AAU)GUGCAU A-AACGAGCA AAA-CUCCAU auauauaau- uuu------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ --auauua-- ----uuu-au (-uaa-u)au aaa---ga-- 3781 ------AA-G GAAUUA-AGA C-AAAUCAUA A|UGAU|CCU UAU------- ---------A 3841 A-U-AU-GGG UA-AUA--GA -CGUGCUAUA AU--AAAAUG A-UAAU-AAA AU--UAUau- 3901 aaaa(--- -----)uuuu -UAAUA-UAU UUUU-UUAUU AUA-UAUUAA 4021 ---------- -----UAUGA --AUUAU-AA U-C(------ ---------- ---------- 4081 ---------- ---------- UGAAAu-uc) G-AU-U--AU -A--UGAAA- -AAAGAAUUG 4141 C-U--AGUAA UACGUAAA(- UUAGU-AU-- --)GUUACGG U-GAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -UAU--U-CU 4261 AACUGU-UU- CGCACUAA-U -CACUCAUCA C-GCG--UUG AAA-CAUAUU AUU------- 4321 ---------- ---------- ---------- ---------- ---------< ---------a 4381 ucuua-uuau uuauauaaua uuuuuuaaua aau(auua)a uaauuauuaa uuuauauuua 4441 uuuauaucag a--------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------a auaauAUGAA UUAA-UGC-G AAGUUGAAAU ACAGUUAC-C GUA-GG(GGA 4621 -A)CCU-GC- GGUGGGCUUA ---------| uaaauaucuu aaauauucuu aca------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- --------|| ||| // LOCUS mt.W.satur 5213 bp RNA RNA 11-JAN-191 DEFINITION Mitochondrion Williopsis saturnus var. mrakii. ACCESSION No information KEYWORDS No information. SOURCE Mitochondrion Williopsis saturnus var. mrakii. ORGANISM Mitochondrion Williopsis saturnus var. mrakii. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: X71392 ID MIWMTRNAV standard; DNA; ORG; 3709 BP. XX AC X71392; XX DT 16-APR-1993 (Rel. 35, Created) DT 16-APR-1993 (Rel. 35, Last updated, Version 2) XX DE W.mrakii mitochondrial DNA for tRNA-Val, 15S rRNA and 21S rRNA DE (partial) XX KW 15S ribosomal RNA; 21S ribosomal RNA; ribosomal RNA; KW small subunit ribosomal RNA; transfer RNA; transfer RNA-Val. XX OS Williopsis mrakii OC Eukaryota; Plantae; Thallobionta; Eumycota; Hemiascomycetes; OC Endomycetales; Saccharomycetaceae. XX OG Mitochondrion XX RN [1] RP 1-3709 RA Drissi R.; RT ; RL Submitted (07-APR-1993) on tape to the EMBL Data Library by: RL R. Drissi, Institut Curie Biologie, Bat 110 Centre Universitaire, RL 91405 Orsay Cedex 13, FRANCE XX RN [2] RP 1-3709 RA Drissi R., Sor F., Fukuhara H.; RT "DNA sequences coding for the ribosomal small subunit RNA and Vayl RT tRNA from the lineard mitochondrial genome of Williopsis mrakii"; RL Unpublished. XX FH Key Location/Qualifiers FH FT source 1..3709 FT /organism="Williopsis mrakii" FT /mitochondrion FT /strain="CBS 1707" FT promoter 42..50 FT /note="15S rRNA promoter" FT rRNA 50..1666 FT /product="15S ribosomal RNA" FT tRNA 1822..1895 FT /product="tRNA-Val" FT promoter 1955..1963 FT /note="21S rRNA promoter" FT rRNA 1963..>3709 FT /product="21S ribosomal RNA" XX SQ Sequence 3709 BP; 1530 A; 324 C; 497 G; 1358 T; 0 other; BASE COUNT 644 a 152 c 225 g 596 t 3596 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ----|----- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 -----aaaua uaauaauaau uaaauuauua uuuuagagga auuauaaaau auagaGAAUA 661 (UGA-)U-GU U|AGUUC-AG ACUUAAUACU -A-UAUA-GA |GA-CA--UA ACAC-A-UGC 721 -AAAUCA-AA CGauu|auu- ---------- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- ---------- ---------- 841 ----uaauug auauauaauu auauaauauu aauauuauau aauucaaaua au-------- 901 ---------- ---------- ---------- ---------- ---------- ----aaua|a 961 uua-A-GU|G GUGUAUCCGU GAGUAA---u a|AAU-AGAA --UUa--GAA CUAAU-AUAU 1021 CUUu------ -------(ua aa-u)----- ---------g AGGAAUA--- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---aua(aau 1141 -----)aaa- ----gauaau uau(uaau)u aauuauu--- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ------GAUA UUAGUCAAG- --CUAUU-ag |--------- -CAGUAUA-- 1321 -GGUAUUAUG UA-GG(AUAA UAGC------ ---------- ---------- ------)CAU 1381 ACAUA|---- GCCGA--UAA U|CUGUA-GC AA|--UUAAU (UAAC--)GU UAUAAUUGU| 1441 CACGUC-GAU UA(UCAAA-- UA-)CAAUCG A|UAUCU--( au-a-)--UG AUA----C-A 1501 GCA|GUG-AG GAAUAUUGGG C-UUAGAUC( ---------- ----GAAA)G AUUGA-CCC| 1561 A|-GUUA-U- CU-AUA---- -AUAAUGAAA --Uuuc-aau ---------- -uuu------ 1621 ---------- -cuuau--uU -AUU|uuuuu uuaaaauuua aauauaguaa agaaaaaauu 1681 guuauaaauu aaaguuauag acuagcgaga auaaugauag uagcuaucau cagauuauga 1741 ugaauauaaa auuuauuuuu uuauaugucg ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ------auUA GUACC|-GAU 1921 -UAA-G--AU AUGU-G(-CC AGCAUUC-GC -GGU-UA)-U ACAUAG|--- -GGU-GCA-- 1981 AGUAU-UAGU UAU--AUU-- ---GGU|UUA AAGGAUCCGU -AGAAUU|UA UAUAU----- 2041 ---------- ---------- -------(-- ----aau)-- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- -------a|u AUAUAUA-UA 2281 G-----AGUU -AA-CA-aua gUAAUA--AA -----|UGAA UUAUAA-UAG ---UAAUG(A 2341 UGAAA)UAU- UAU---GAUA AUUA-UAG-G ACA------- ----GUCAAA -AUU(-GAAA 2401 -)AU|A---- ----UUUAUU A-UAUGU-U- AA---CUGAC AUU--GAGGG AUGAA-GGCU 2461 A-AAU---UA AUGAAAUGG( AUUCGAUAC) CCAA-GUAA| -UUUU-AGC- AGUAAA-CUA 2521 U--GAGU-AC |UG|AAUAUU UAU---(-aa uaa------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---)----AU AAAUAUU-UA AGA(GAAA)U CA-AUAGUAU 2701 U-C|--C|AC C-AGGA-GAG UAUAAUA(-- -ACUC--)AA UGG--AAACC CAAUACAA-U 2761 AG|ACGGUU- AUAAUC---A AUAGCAGU|G GAGUAUGU-U |AUUUAA-UU UG(AUAAUCC 2821 C--------- ----)CAAAA A-UC-UUACC ACAUCUUGAA uauuaucuuu aa-------- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- --uga-uauu a--C---AGG CGU-UA|CA- 3121 |UA|-GU--U |G------UC UU-CA|G-UU CGU-|GCU(G --UGA)AGUU UAAGG(UUA- 3181 GUU)CCG-U- A-AACGAACG CAU-UCCUGU au---aaaua uauuaa---- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|-uauuu aua-auuc-- u-uuauu-ua (aaug-c)au aaa---gag- 3781 -----AAU-A GGUUUA-AGA C-AAAUCAUU A|UGAC|CCU AAU------- ---------G 3841 U-U-GU-GGG CU-AUA--GA -CGUACUAUA AA--auaaua u-auaa-aau uu--aauua- 3901 aaua-gugau auuuaaugau aaauacaacu uauuaaaaua uguu------ ---------- 3961 ---------- ---------- ---------- --------au --------au auu-aauaua 4021 uaauuu---u ag---UAUGA --AUUAU-AU C-C(------ ---------- ---------- 4081 ---------- ---------- UGUAAu-uc) G-GA-U--AU -A--UGAAA- -CAAGAAUUG 4141 C-U--AGUAA UCUGUAAU(- UAAGU-AU-- --)AUUACGG U-GAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -UAU--UAUU 4261 AAUUGU-UU- CGCACUAA-U -UACUCGUCA C-GCG---UA Aau-uaaaau aaauaacaaa 4321 aauaaa---- ---------- ---------- ---------- ---------< uauuauauu- 4381 auuaa-ucuu uuauuauuua auaauugu-- uuug-auuuu uua-a----- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ------uuuu 4561 auuuaguuau cuguuuuaua UUAU-UGC-G AAGUCGAAAU ACAGUUAC-U GUA-GG(GGA 4621 -A)CCU-GC- AGUGGGCUAU ---------| auuuaaucuu uauucauauu caca~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS (6)-MITOSP 5213 bp RNA RNA 25-JAN-1994 DEFINITION MITOSPORIC ASCOMYCOTA. ACCESSION No information KEYWORDS No information. SOURCE MITOSPORIC ASCOMYCOTA. ORGANISM MITOSPORIC ASCOMYCOTA. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: DIVIDER BASE COUNT 0 a 0 c 0 g 0 t 5213 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ----|..... .......... .......... 541 .......... .......... .......... .......... .......... .......... 601 .......... .......... .......... .......... .......... .......... 661 .......-.. .......... .......... ..-....... |......... ....-..... 721 .......-.. .....|.... ........-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- ------.... .......... 841 .......... .......... .......... .......... .......... .......... 901 .......... .......... .......... .......... .......... .......... 961 .....-..|. .......... .......... .|........ -......... .....-.... 1021 .......... ....---... ..-..---.. .......... .......... .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .......... .......... .......... .......... .......... 1201 .......... .......... .......... .......... .......... .......... 1261 .......... .......... .........- .......... ..----.... ........-- 1321 .......... .......... .......... .......... .......... .......... 1381 ......---. .......... .......-.. .......... .......... .......... 1441 .......... ........-. ..-....... .......... .......... ........-. 1501 ...|...-.. .......... .......... .......... .......... .....-...| 1561 .......... .......... .......... .......... .--....... .......... 1621 .......... .......... .......... .......... .......... .......... 1681 .......... .......... .......... .......... .......... .......... 1741 .......... .......... .......... .......... .......... .......... 1801 .......... .......... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .......... .......... 1921 .......... .......-.. .......... -.......-. .......... .......... 1981 .....-.... ...--..... .......... .......... -......... .......... 2041 .......... .....----. .......... .......... .....----- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- --------.. .......... .......... .......... 2221 .......... .......... .......... .......... ........|. .......-.. 2281 .......... -......... ......--.. .-........ .......... ---....... 2341 .......... ...-...... ....-..... .......... .......... .......... 2401 ....|..... .......... .......... .......... .......... .....-.... 2461 .....--... .......... .......... .......... .......... .......... 2521 .--....-.. |......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... .......... 2701 .-..-..... .......... .......... .......... .......... .......... 2761 ..|....... .......... ........|. ........-. |......... .......... 2821 .--------- ----...... .-........ .......... .......... .......... 2881 .....---.. ..-....... .......... .......... .......... .......... 2941 .......... .......... .......... .......... .......... .......... 3001 .......... .......... .......... .......... .......... .......... 3061 .......... .......... .......... .......... .--....... ...-.....- 3121 .......--. |......... .......-.. .......... .-........ .........- 3181 .......... .-........ .......... .......... .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .......... .......... .......... 3361 .......... .......... .......... .......... .....--... .......... 3421 .......... .......... .......... .......... .......... .......... 3481 .......... ........-- --........ .......... .......... .......... 3541 .......... .......... .......... .......... .......... .......... 3601 .......... .......... .......... .......... .......... .......... 3661 .......... .......... .......... .......... .......... .......... 3721 .......... .......... .......... .......... .....-.... .......... 3781 .......... .......... .......... ......|... ...------- -------... 3841 ...-..-... ..-....... .......... ..-....... ......-... ..--...... 3901 .......... .......... .......... .......... .......... .......... 3961 .......... .......... ...-...... .......... .......... .......... 4021 ......---. .......... .-........ .-........ .......... .......... 4081 .......... .......... ......-... .......... .........- .......... 4141 .-.-...... .......... .......... .......... .-........ .......... 4201 .......... .......... .......... .......... .......... .......... 4261 .......... .......... .......... .-........ ...-...... .......... 4321 .......... ......-... .........- .......... -......... .........- 4381 .....-.... .......... ........-- ....-..... .......... .......... 4441 .......... .......... .......... .......... .......... .......... 4501 .......... .......... ...--..... ........-- .......... .......... 4561 .......... .......... ........-. .......... ........-. ...-...... 4621 -.....-... .......... .......... .......... .......... .......... 4681 .......... .......... .......... .......... .......... .......... 4741 .......... .......... .......... .......... .......... .......... 4801 .......... .......... .......... .......... .......... .......... 4861 .......... .......... .......... .......... .......... .......... 4921 .......... .......... .......... .......... .......... .......... 4981 .......... .......... .......... .......... .......... .......... 5041 .......... .......... .......... .......... .......... .......... 5101 .......... .......... .......... .......... .......... .......... 5161 .......... .......... .......... .......... ........|| ||| // LOCUS mt.B.bassi 5213 bp RNA RNA 23-MAR-1997 DEFINITION Mitochondrion Beauveria bassiana.; . ACCESSION U91338 KEYWORDS . SOURCE Mitochondrion Beauveria bassiana. ORGANISM Mitochondrion Beauveria bassiana. REFERENCE 1 (bases 1 to 1561) AUTHORS Hegedus,D.D., Pfeifer,T.A., Mulyk,D.S. and Khachatourians,G.G . TITLE Nucleotide sequence and secondary structure prediction of the Beauveria bassiana mitochondrial small ribosomal RNA JOURNAL Unpublished STANDARD No information REFERENCE 2 (bases 1 to 1561) AUTHORS Hegedus,D.D., Pfeifer,T.A., Mulyk,D.S. and Khachatourians, G.G. TITLE Direct Submission JOURNAL Submitted (26-FEB-1997) Zoology, University of British Columbia, 6270 University Blvd., Vancouver, BC V6T 1Z4, Canada STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: U91338 BASE COUNT 528 a 216 c 326 g 483 t 3660 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ------aaua uaguuGAGU- 661 (UUG-)U-GA U|-GCUC-UG AUUGAACACU -G--UCA-AG |UG-CU--UG ACAC-A-UGC 721 -UAAUCG-AA CGuuu|uaau uaagagu--- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- ---------- ---------- 841 ----gguuua gcuuaucaug uaaguaauag gccu------ ---------- ---------- 901 ---------- ---------- ---------- ---------- -cnccucuuc auaauuaa|a 961 a---A-GU|G GUGUACAGGU GAGUAUaaua a|uau-uuau -gcc---GNC CUUAG-AGUG 1021 AAGA------ -------(ua aa-u)----- ---------U CUUCAUA--- ---------- 1081 ---------- ---------- ---------- ---------- ---------- --uaau(aaa 1141 ggg--)auua ---------- agu(auu-)g gg-------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- -----nG-nU UAAGAggau- gauaaauauu |--------u uCGGGAUA-- 1321 -GGUAGUAGU GA-AG(GUUA UGU------- ---------- ---------- ------)CUU 1381 CACUA|---- GCCuu-aacU C|UCGUA-GU CG|--AAGCU (GAAA--)GG UUGAUCGAC| 1441 CACAUU-GGG UC(UGAAA-- AA-)AGCCCA A|UGCA---( ag-uu)---A GUA----C-A 1501 GCA|GUG-AG -AAUAUUGGU C-AAUGGCC( ---------- ----UAAC)G GCUGA-ACU| 1561 G|-GCAA-C- UU-GGA---- -GAAGUGUUA -agucuuuau u-----unn- guauu----- 1621 ---------- guaaua---g -acu-acguu uuaauaagcu au-------- ------augu 1681 aaauauagug cuuaggcgga gcuuauuaac acacaaauua aagauuaaau uaguauugaa 1741 ugaaacuuug uuuauauauc gauaa----- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ugacgauau- auauauua-U GUCUU|-GAC 1921 -CAA-U---U ACGU-G(-CC AGCAGUC-GC -GGU-AA)-U ACGUAA|--- -GAG-ACU-- 1981 AGUGU-UAUU CAU--cuuaa uuaGGU|NUA AAGGGUACUC -A-AACG|Gu cuguu----- 2041 ---------- ---------- -------(-- uugcacc)-- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- aa-agaC-UA 2281 G-----AGUU -AU-AU--ag aAGAAG--GU -----|AGUA CCUUAA-GUG ---UAGAG(A 2341 UAAAA)UUU- ugu---UAUA CAGG-AGG-G ACUu------ ----AGAAAA -GGC(-GUAG 2401 -)NC|A---- ----ACCUUC U-AAGUAAU- AA---CUGAC GUU--GAAGG ACGAA-GGCA 2461 U-AGG---UC ACGAACAGG( ACUAGUAAC) CCAA-GUAG| -UCUU-UGC- AGUCAA-UGA 2521 U--GAAU-GC |CA|UAGGUU AGA---(-ua aaaau----- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---)----UU AAGUCUA-UA AAU(GAAA)A UG-UAAGCAU 2701 U-U|--C|AC C-UCAA-GAG UAAUGUG(-- -GCAA--)CG CAG--GAACU GAAAUCAC-U 2761 AG|ACCGUU- UCUGAC---A CCAGUAGU|G AAGUAUGU-U |GUUUAA-UU CG(AUGAUCC 2821 A--------- ----)CGAAA A-ACCUUACC ACAAUUUGUa uau------- ---------- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- -------uuu a--C---AGG AGU-UG|CA- 3121 |CG|-GC--U |G------UC UU-CA|G-UU GAU-|GUU(G --UGA)AACU -GUGG(UU-- 3181 --U)CCA-U- G-AAUUAACG CAA-UCCCUU -----gcuu- uau------- -----(---- 3241 --)<-uuuug uucguacaaa cuaaggcuua guuaaagcua uauuuaguua c--------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|-----u aua-aagcau uugaccc-ua (-uaa-u)uu gggaagaaa- 3781 -----AAA-G GGAGUA-AGA C-AAGUCAUC A|UGGC|CUU AAU------- ---------A 3841 C-U-GU-GGG CU-AUA--GA -CGUGCCACA UA--agccua u-acaa-aga ga--ugcga- 3901 aaau------ ---------- ---------- ---------- ---------- ---------- 3961 ---------- ------(--G UGA--)auuc -uagcaaauc ucaa---aau agg-aaauaa 4021 a--------- -----AAGGA --AUUCU-AG U-C(------ ---------- ---------- 4081 ---------- ---------- UGUUUa-ac) G-AC-U--AU -A--UGAAU- -AAGUAAUUA 4141 C-U--AGUAA U-CGUGAA(- UAAGG-AU-- --)GUCACGG A-GAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -UAU--U--u 4261 aUGGGA-UU- GGUACUAA-C -CACUCGUC- G-AUG--CUG AAA-GGAgu- ---------- 4321 ---------- ---------- ---------- ---------- ---------< uuauacaauu 4381 aaguu-ugcu cuuuuauuag uaaaaaaaua aaa(uaa-)u uagauuuugu auauauuauu 4441 auaaaauucu ucgcauguau a--------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- ---gCUCUAA UUAG-UGU-U AAGUCGAAAU ACGGUUCG-C GUA-GU(GGA 4621 -A)GUU-GC- GCGGGAuauu aag------| ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- --------|| ||| // LOCUS (5)-BASIDI 5213 bp RNA RNA 25-JAN-1994 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: DIVIDER BASE COUNT 0 a 0 c 0 g 0 t 5213 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ----|..... .......... .......... 541 .......... .......... .......... .......... .......... .......... 601 .......... .......... .......... .......... .......... .......... 661 .......-.. .......... .......... ..-....... |......... ....-..... 721 .......-.. .....|.... ........-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- ------.... .......... 841 .......... .......... .......... .......... .......... .......... 901 .......... .......... .......... .......... .......... .......... 961 .....-..|. .......... .......... .|........ -......... .....-.... 1021 .......... ....---... ..-..---.. .......... .......... .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .......... .......... .......... .......... .......... 1201 .......... .......... .......... .......... .......... .......... 1261 .......... .......... .........- .......... ..----.... ........-- 1321 .......... .......... .......... .......... .......... .......... 1381 ......---. .......... .......-.. .......... .......... .......... 1441 .......... ........-. ..-....... .......... .......... ........-. 1501 ...|...-.. .......... .......... .......... .......... .....-...| 1561 .......... .......... .......... .......... .--....... .......... 1621 .......... .......... .......... .......... .......... .......... 1681 .......... .......... .......... .......... .......... .......... 1741 .......... .......... .......... .......... .......... .......... 1801 .......... .......... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .......... .......... 1921 .......... .......-.. .......... -.......-. .......... .......... 1981 .....-.... ...--..... .......... .......... -......... .......... 2041 .......... .....----. .......... .......... .....----- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- --------.. .......... .......... .......... 2221 .......... .......... .......... .......... ........|. .......-.. 2281 .......... -......... ......--.. .-........ .......... ---....... 2341 .......... ...-...... ....-..... .......... .......... .......... 2401 ....|..... .......... .......... .......... .......... .....-.... 2461 .....--... .......... .......... .......... .......... .......... 2521 .--....-.. |......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... .......... 2701 .-..-..... .......... .......... .......... .......... .......... 2761 ..|....... .......... ........|. ........-. |......... .......... 2821 .--------- ----...... .-........ .......... .......... .......... 2881 .....---.. ..-....... .......... .......... .......... .......... 2941 .......... .......... .......... .......... .......... .......... 3001 .......... .......... .......... .......... .......... .......... 3061 .......... .......... .......... .......... .--....... ...-.....- 3121 .......--. |......... .......-.. .......... .-........ .........- 3181 .......... .-........ .......... .......... .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .......... .......... .......... 3361 .......... .......... .......... .......... .....--... .......... 3421 .......... .......... .......... .......... .......... .......... 3481 .......... ........-- --........ .......... .......... .......... 3541 .......... .......... .......... .......... .......... .......... 3601 .......... .......... .......... .......... .......... .......... 3661 .......... .......... .......... .......... .......... .......... 3721 .......... .......... .......... .......... .....-.... .......... 3781 .......... .......... .......... ......|... ...------- -------... 3841 ...-..-... ..-....... .......... ..-....... ......-... ..--...... 3901 .......... .......... .......... .......... .......... .......... 3961 .......... .......... ...-...... .......... .......... .......... 4021 ......---. .......... .-........ .-........ .......... .......... 4081 .......... .......... ......-... .......... .........- .......... 4141 .-.-...... .......... .......... .......... .-........ .......... 4201 .......... .......... .......... .......... .......... .......... 4261 .......... .......... .......... .-........ ...-...... .......... 4321 .......... ......-... .........- .......... -......... .........- 4381 .....-.... .......... ........-- ....-..... .......... .......... 4441 .......... .......... .......... .......... .......... .......... 4501 .......... .......... ...--..... ........-- .......... .......... 4561 .......... .......... ........-. .......... ........-. ...-...... 4621 -.....-... .......... .......... .......... .......... .......... 4681 .......... .......... .......... .......... .......... .......... 4741 .......... .......... .......... .......... .......... .......... 4801 .......... .......... .......... .......... .......... .......... 4861 .......... .......... .......... .......... .......... .......... 4921 .......... .......... .......... .......... .......... .......... 4981 .......... .......... .......... .......... .......... .......... 5041 .......... .......... .......... .......... .......... .......... 5101 .......... .......... .......... .......... .......... .......... 5161 .......... .......... .......... .......... ........|| ||| // LOCUS mt.A.aeger 5213 bp RNA RNA 12-JUN-1996 DEFINITION Mitochondrion Agrocybe aegerita.; . ACCESSION U54637 KEYWORDS . SOURCE Mitochondrion Agrocybe aegerita. ORGANISM Mitochondrion Agrocybe aegerita. REFERENCE 1 (bases 1 to 3948) AUTHORS Gonzalez,P., Barroso,G. and Labarere,J. TITLE aegerita Complete sequence and secondary structure of the mitochondrial small subunit ribosomal RNA and evidence of its group-IC2 intron from the cultivated basidiomycete Agrocybe JOURNAL Unpublished STANDARD No information REFERENCE 2 (bases 1 to 3948) AUTHORS Labarere,J. TITLE Direct Submission JOURNAL Submitted (10-APR-1996) Jacques Labarere, Molecular Genetics and Improvement of Edible Mushrooms, Bordeaux II University, I.N.R.A. CRA de Bordeaux BP 81, Villenave d'Ornon Cedex 33883, France STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: U54637 BASE COUNT 672 a 251 c 335 g 642 t 3313 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ------cuuu uggaaGAAUU 661 (UAA-)U-UU U|GGUUC-UG AUUGAACGUU -U-UUCA-GU |AG-UU-UUA AGAC-A-UGC 721 -Aaaucg--u uauuu|u--- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- ---------- -)agaaaaaa 841 guauagaa-- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- --------|- 961 ----u-aa|g guguaaaggu gaguaa--UG A|UAA-AUAa --ga---uac cuuaucaguc 1021 uuuu------ ---------- cg-aa---au agaggauacu uauauaauau aaauuauaug 1081 cuaauauagc uaaauuauga agaaaggaau uuuucu---- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ------acua uaagagucg- --auuua-uu |--------- -UUGUUUAau 1321 uGGUAGUUGG UA-GG(GUAA AGG------- ---------- ---------- ------)CCU 1381 ACCAA|---- GCCUA--CGA U|CAAUA-GC CA|--AGUUU (GAAA--)GA ACAAAUGGC| 1441 CACAUU-GGG AA(UGAAA-- A--)GCCCCA A|AUUGC--( -uuaa)--GC AAU----C-U 1501 GCA|GUC-AA GAAUAUUAGU C-AAUGCUC( ---------- ----GCAA)G AGUGA-ACU| 1561 A|-GCUA-A- CU-GAA---- -aucacaaaa ucac------ (-------uu aauc------ 1621 --------)- -gugguuauu -gug|----- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ------auaa cguaagggaa 1801 aaaaaugaua uuaccuuacu au-------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- --------AA GUGUU|-GUC 1921 -UAA-AuuAC UGGU-G(-CC AGAAGAC-UC -GGU-AA)-C ACCAGA|--- -AAC-GCG-- 1981 AACGU-UAGU CGU--CUUAA ACAGGC|GUA AAGGGUAAGU -A-GGCU|gc uuuaaa--uu 2041 |uucua--uu uuuaaacuaa auuuacu(-- --uuua-)ag uaaauaagcu cuaaauuuaa 2101 uaaauaaaaa uaaaauuuuc aacucgcaau ccucaggauu uuuaugagaa aauuaaauaa 2161 auuugaccug uaauuuuauu aagaucagua aaaauagaau ---------- ---------- 2221 ---------- ---------- ---------- ---------- ------aa|a uuaaagc-UA 2281 G-----AAUC -Au-aaug-g -agaua--aa c-caa|AUAA UACUUAUGUG ---UAAGG(A 2341 UGAUA)UCU- AAA---GAUA CUAA-GUA-G AAU------- ----ACUAAU -GGU(-GAAA 2401 -)AC|UU--- ----uuuauc uaguaa--u- ga---uuGAC GCUc-GAGGA ACGAA-AGUG 2461 --GAA---UA GGGAAUAGG( AUUAGAUAC) CCACgUUAC| -CUCU-CAC- CGUCAA-CGA 2521 U--GAAU-GG |UA|guuauu aguuua(--- ---------- ---------- ----aua--- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---)-uaaau uaguaac-GA UGU(UAAC)G CGAUAACCAU 2701 U-C|--C|GC C-UUGA-GAG UACGGUU(-- -GCAA--)AA CUG--AAACC AAAAAAAU-U 2761 AG|UCGGUC- UCGGAG--CA AACGAAGU|G AAGCAUGU-U |AUUUAA-UA CG(AAAGUAC 2821 G--------- ----)CGUAA A-AUCUUACC AGUUCUUG-C AUA------- ---------- 2881 ---------- ---------- ---------- --------------U A--C---AGG UGU-UG|CA- 3121 |UG|-GC--U |G------UC GU-CA|G-UC CGU-|AUU(G --UGA)AAAG UGAGG(UUA- 3181 ACU)CCA-C- U-AACGGACG AAA-UCCCUG -----UUGUU AAuuu----- -----(auac 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ uua-acuauu gaugauu-au (uaaa-u)au uuu-ca---- 3781 -----UUU-G GGGCUA-AGA C-AAGUCGUU A|UGGC|CCU CAU------- ---------G 3841 A-A-CU-GGG CU+AUA--GA -CGUGCUGCA AA--AACUUU U-ACAA-UGU GA--CGCAA- 3901 AAcu(--- -----)gguu -uaGCUAAUC AAU--AAAAA AAG-UUAuuu 4021 uuauuauuuu uaua-AACGG --AUUGU-UG C-C(------ ---------- ---------- 4081 ---------- ---------- UGGAAu-uc) G-GC-A--AC -A--UGAAG- -AAGGCCUUU 4141 C-G--AGUAA U-CGUUGA(- UUAGU-AUU- --)GCAACGG U-GAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -gau--ugaa 4261 -uccgu-GA- UGAACUAA-C -UGUCUGUCG C-UGG--GGA GGA-GUUCcg auugggccaa 4321 auccccuuua auaaau-aug aag------- ---------- -(------)< ---------- 4381 ---aa-caaa aguauacacu auauuaaauu uauauuaaaa auauuuguua aauauuuuuc 4441 uaauuau(uu uuaauu)aag uguaguuauu cuuauuuguu acuuauguaa cuuuauauag 4501 ugcaguuuaa cucuuuuguu -->------- ---------- -----gagau uuauuaauau 4561 cgauuaaccc uuCUGAGUAA CAUU-UCA-A AAGUCAUAGC AAGGUAGCUU GUA-CU(GGA 4621 -A)AGUCGC- UGCUGGAAAA UAUA-----| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS mt.S.sinus 5213 bp RNA RNA 11-JAN-191 DEFINITION Suillus sinuspaulianus. ACCESSION No information KEYWORDS No information. SOURCE Suillus sinuspaulianus. ORGANISM Suillus sinuspaulianus. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Thesis; Yunan Li, University of California at Berkeley BASE COUNT 1006 a 300 c 408 g 958 t 2541 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ----|gagcu cucauuuaaa aaauuugggg 541 cugaaauaau aaaaaaaaua aauagauaaa uauuaaaaau auaaaagaga uauuaaauau 601 ugcauuaaag caaauaaaau acgacaauaa aaaaaaauug uuuaauaaaa agaaaGAAUU 661 (UAA-)U-UU U|GGUUC-CG AUUGAACGUU -U-UUCA-GU |AG-UU-UUA AGAC-A-UGC 721 -AAAUCG--U UAuuu|c--- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- ---------- -)ugaaagua 841 aauuuuuauu uaaaauuau( auaa)auaau aacuaaauaa aaaugauaau au-------- 901 ---------- ---------- ---------- ---------- ---------- -------g|a 961 a--au-AA|G GUGUAGAGGU GAg-ga--UA G|UAA-AUaa --ga---uac ccugu-aguc 1021 uuca------ -------(ua ga-u)----- ---------a gaagaua--- -uuauucuaa 1081 guaaauuuuu uaaauuuauu acuaguauuu uuaaauuaau uugcuugcau uauauaaaau 1141 uauaauuguu uuucauuaau ugcaaaaauu uaaauaaaaa ugacuaaagc aaaaaaauua 1201 uuuaaauaac aauaauguaa aauaaaugaa uaaaauaaaa aagcuauuuu uauuaaaaaa 1261 aggaaauuuu cu----GCUA UAGGAUUCU- --AUUUA-UU |--------- -UUGAUUA-- 1321 -GGUAGUUGG UAuGG(GUAA AGG------- ---------- ---------- ------)CCU 1381 ACCAA|---- GCCGA--CAA U|CAAUA-GC CA|--uGCUU (GACA--)GA GCAGAUGGC| 1441 CACAUU-GGG AA(UGaaa-- u--)CUCCCA A|GUAGU--( uuuau)--AC UAC----C-A 1501 GCA|GUC-AA GAAUAUUAGU C-AAUGCUC( ---------- ----GUAA)G AGUGA-ACU| 1561 A|-GCUA-A- CU-GAA---- -aucgcaaau ---------- (-------gu guc------- 1621 --------)- -----a-uuu -gug|----- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ------auaa aguaagagaa 1801 aauuaugaua uuaucuuacu ac-------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- --------UA GUGCU|-GUC 1921 -CAA-A--AC UGGU-G(-CC AGAAGAC-UC -GGU-AA)-G GCCAGA|--- -GGC-GCA-- 1981 AACGU-UAGU CGU--CCUAA UCAGGC|GUA AAGGGUUUGU -A-GGCU|gc uuugaa--ag 2041 |ucuua--uu auua------ -uaau--(-- --agcu-)-- auua------ ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------a augauaagau ---------- ---------- 2221 ---------- ---------- ---------- ---------- ------ga|a uugaagc-UA 2281 G-----AAUC -Ua-auag-a -gggua--aa a-caa|AUAA UAUUUA-AAG ---UAAGG(A 2341 UUAAA)UCU- CAA---GAGU UUAG-AUG-G AAU------- ----ACUAAC -GGU(-UAAA 2401 -)GC|U---- ----uuuauc uaucuac-A- GA---UUGAC GCU--GAGAA ACGAA-AGGG 2461 A-GGU---AA GGAAACAGG( AUUAGAUAC) CCAA-CUAC| -UGCU-CCC- UGUCAA-CGA 2521 U--GAAU-GG |UG|GUUGCU AGUuau(aac uacuuuaagu aaauauuuua uauuauauaa 2581 gauaaaaua- aguaguuaaa ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---)-augAC UGGUAGC-GA UGC(UAAC)G CGUUAACCAU 2701 U-C|--C|GC C-UUGU-GAG UACGACU(-- -GCAA--)AG UUG--AAAAC AAAAAAAU-U 2761 AG|UCGGUU- UCGAAG--CA AACGAAGU|G AAGCAUGU-U |AUUUAA-UA CG(AUAAUCC 2821 G--------- ----)CGUAA A-AUCUUACC AGUUCUUG-C AUA------- ---------- 2881 ---------- ---------- ---------- --------------U A--C---AGG UGU-UG|CA- 3121 |UG|-GC--U |G------UC GU-CA|G-UC CGU-|gcu(G --UGA)gaaG UUUGG(UUA- 3181 AAU)CCG-C- U-AACGGACA AAA-UCCCUG -----UUGUU AAuuu----- -----(auac 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ UUA-ACAAUu aaugaua-cu (gaua-g)ag cau-ca---- 3781 -----UUU-G GGGCGA-AGA C-AAGUCGUU A|UGGC|CCU CAU------- ---------G 3841 A-A-CU-GGG CU-AUA--GA -CGUGCCACA AA--GACUUU A-ACAA-AGU GA--AGCGA- 3901 Uacu(--- -----)ggaG -GAGCUAAUC AUU--AAAAA AAG-UCAAAC 4021 uauuaa---a uaua-GUCGG --AUUGU-CA U-C(------ ---------- ---------- 4081 ---------- ---------- UGAAAc-uc) G-GG-G--AC -A--UGAAG- -AAGGAAUUU 4141 C-G--AGUAA U-CGUUGA(- UCACU-AC-- --)GCAACGG U-GAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -GCU--AGCA 4261 -UUCGG-AA- UGAACUAA-C -CGUCUGUCG C-UGG--GAA GGA-GCUUAA cuugguggaa 4321 acuggaauga aguuuu-aac uuuuacaaa- aauuaaa--- -(------)< -uuuuuauu- 4381 uagua-ucuu ugauauuuua uuuuuaau-- uuau-uaguu uuu-uuuucg uuagauuuuu 4441 uuuaauu(ua uugcuu)aau uaaaaaguau uauuuuuguu uaaagaau-a aauacuuguc 4501 uaacaauguu aaauuuaaaa -->------- ----cgau-- uuuguuaagc aaauuagcuc 4561 uaguuaaacc aaUUAAGUAA CAUC-UCA-A AAGUCAUAGC AAGGUAGC-C GUA-CU(GGA 4621 -A)AGU-GC- UGCUGUAAAA UAAA-----| ACGAAUAGUU UAUAACCCCC CUAUAAACUA 4681 UCAUUUUUUG UAUUAAUUAC CUUUUUAAUA CAAUUUUUUA AAUUAUAUAC UUAUUAAUAC 4741 UUUACGUCCU AAUAUACAUA UAUUUUUUUU AACAAAUUAU CAAUCCUUAU UAAUUUAAAU 4801 GUAAAAUAUU UAUUUAUUUU AUAAUUUUUG UUUUUUAUUA UUUUUAUAUU AUUUUUAUAU 4861 UAUUUUUAAG GGGUUAGCUG AGUGGUUUAG CAGUAAAUUU ACACUUUACA GACAGGGUUU 4921 CGAUUACUCU ACUCCUUAUU UUUUGUUAAG AUUAAAGUUA UAUCUUUAAA UAUGAGGUAU 4981 AAUAUCUAAA CUAAUUUAUU UAUUAUUUUU AAAUUUAAUU AUAUAAAUAU UUAGGAAAAA 5041 UAAUUUAUUU AAUAUAAAAA GUAUAAUUUU UAUGAUUAAA UUUUAGUAUA AAUUAUUUUA 5101 UCACAAAAUA UAAUAUUUUA AUUUAUAUGU AUUUUCUCAU GAAACUACAG AGUUAAUUAC 5161 UGGAAUGUUA UUAAGUGAUG GUAAUUUAGA CUUAUCAAAU UCUGCAG~|| ||| // LOCUS (5)-CHYTRI 5213 bp RNA RNA 25-JAN-1994 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: DIVIDER BASE COUNT 0 a 0 c 0 g 0 t 5213 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ----|..... .......... .......... 541 .......... .......... .......... .......... .......... .......... 601 .......... .......... .......... .......... .......... .......... 661 .......-.. .......... .......... ..-....... |......... ....-..... 721 .......-.. .....|.... ........-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- ------.... .......... 841 .......... .......... .......... .......... .......... .......... 901 .......... .......... .......... .......... .......... .......... 961 .....-..|. .......... .......... .|........ -......... .....-.... 1021 .......... ....---... ..-..---.. .......... .......... .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .......... .......... .......... .......... .......... 1201 .......... .......... .......... .......... .......... .......... 1261 .......... .......... .........- .......... ..----.... ........-- 1321 .......... .......... .......... .......... .......... .......... 1381 ......---. .......... .......-.. .......... .......... .......... 1441 .......... ........-. ..-....... .......... .......... ........-. 1501 ...|...-.. .......... .......... .......... .......... .....-...| 1561 .......... .......... .......... .......... .--....... .......... 1621 .......... .......... .......... .......... .......... .......... 1681 .......... .......... .......... .......... .......... .......... 1741 .......... .......... .......... .......... .......... .......... 1801 .......... .......... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .......... .......... 1921 .......... .......-.. .......... -.......-. .......... .......... 1981 .....-.... ...--..... .......... .......... -......... .......... 2041 .......... .....----. .......... .......... .....----- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- --------.. .......... .......... .......... 2221 .......... .......... .......... .......... ........|. .......-.. 2281 .......... -......... ......--.. .-........ .......... ---....... 2341 .......... ...-...... ....-..... .......... .......... .......... 2401 ....|..... .......... .......... .......... .......... .....-.... 2461 .....--... .......... .......... .......... .......... .......... 2521 .--....-.. |......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... .......... 2701 .-..-..... .......... .......... .......... .......... .......... 2761 ..|....... .......... ........|. ........-. |......... .......... 2821 .--------- ----...... .-........ .......... .......... .......... 2881 .....---.. ..-....... .......... .......... .......... .......... 2941 .......... .......... .......... .......... .......... .......... 3001 .......... .......... .......... .......... .......... .......... 3061 .......... .......... .......... .......... .--....... ...-.....- 3121 .......--. |......... .......-.. .......... .-........ .........- 3181 .......... .-........ .......... .......... .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .......... .......... .......... 3361 .......... .......... .......... .......... .....--... .......... 3421 .......... .......... .......... .......... .......... .......... 3481 .......... ........-- --........ .......... .......... .......... 3541 .......... .......... .......... .......... .......... .......... 3601 .......... .......... .......... .......... .......... .......... 3661 .......... .......... .......... .......... .......... .......... 3721 .......... .......... .......... .......... .....-.... .......... 3781 .......... .......... .......... ......|... ...------- -------... 3841 ...-..-... ..-....... .......... ..-....... ......-... ..--...... 3901 .......... .......... .......... .......... .......... .......... 3961 .......... .......... ...-...... .......... .......... .......... 4021 ......---. .......... .-........ .-........ .......... .......... 4081 .......... .......... ......-... .......... .........- .......... 4141 .-.-...... .......... .......... .......... .-........ .......... 4201 .......... .......... .......... .......... .......... .......... 4261 .......... .......... .......... .-........ ...-...... .......... 4321 .......... ......-... .........- .......... -......... .........- 4381 .....-.... .......... ........-- ....-..... .......... .......... 4441 .......... .......... .......... .......... .......... .......... 4501 .......... .......... ...--..... ........-- .......... .......... 4561 .......... .......... ........-. .......... ........-. ...-...... 4621 -.....-... .......... .......... .......... .......... .......... 4681 .......... .......... .......... .......... .......... .......... 4741 .......... .......... .......... .......... .......... .......... 4801 .......... .......... .......... .......... .......... .......... 4861 .......... .......... .......... .......... .......... .......... 4921 .......... .......... .......... .......... .......... .......... 4981 .......... .......... .......... .......... .......... .......... 5041 .......... .......... .......... .......... .......... .......... 5101 .......... .......... .......... .......... .......... .......... 5161 .......... .......... .......... .......... ........|| ||| // LOCUS mt.All.mac 5213 bp RNA RNA 11-JAN-191 DEFINITION Allomyces macrogynus. ACCESSION No information KEYWORDS No information. SOURCE Allomyces macrogynus. ORGANISM Allomyces macrogynus. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: U23935 U41288(complete mt. genomic seq.) LOCUS AMU23935 1723 bp DNA PLN 20-APR-1995 DEFINITION Allomyces macrogynus small subunit ribosomal RNA (rns) gene, mitochondrial gene encoding mitochondrial rRNA subunit, complete sequence. ACCESSION U23935 KEYWORDS . SOURCE Allomyces macrogynus. ORGANISM Mitochondrion Allomyces macrogynus Eukaryotae; mitochondrial eukaryotes; Metazoa/Eumycota group; Eumycota; Chytridomycotina; Chytridiomycetes; Blastocladiales; Blastocladiaceae; Allomyces. REFERENCE 1 (bases 1 to 1723) AUTHORS Paquin,B., Forget,L., Roewer,I. and Lang,B. TITLE Molecular phylogeny of Allomyces macrogynus: congruency between nuclear ribosomal RNA- and mitochondrial protein-based trees JOURNAL J. Mol. Evol. (1995) In press REFERENCE 2 (bases 1 to 1723) AUTHORS Lang,B. TITLE Direct Submission JOURNAL Submitted (31-MAR-1995) B. Franz Lang, Biochimie, Universite de Montreal, C.P. 6128, succ. Centre-Ville, Montreal, Quebec H3C 3J7, Canada COMMENT NCBI gi: 777406 FEATURES Location/Qualifiers source 1..1723 /mitochondrion /strain="Allomyces macrogynus his1 3-35 (35oC)" /organism="Allomyces macrogynus" /cell_line="ATCC 46923" rRNA 1..1723 /gene="rns" /note="SSU rRNA" /product="small subunit ribosomal RNA" BASE COUNT 547 a 305 c 417 g 454 t ORIGIN BASE COUNT 547 a 305 c 417 g 454 t 3490 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ----|----- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- -------uua auuuuGAGUU 661 (UGA-)U-CU U|GGCUC-UG AAUGAACGCU -A-GCUA-UU |GA-CU--UA ACAC-A-UGC 721 -UAGUC-A-G AAu--|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------uuu u)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- --------|- 961 ---aU-UC|G GCGUAAAGGU GAGUAA--au c|uag-gaga --aa---aac caaug-aaGU 1021 GAGCCCC--- ---C---(UU CG--)---G- -------GGG UUUUACA-uu uucguuugga 1081 aaaacuaccu uauaaauaga g--------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 --------ua cggaaacgug uacguauga- -aucauguaa ca-------- -GGGUUAA-- 1321 -auc--ucug uaugguuaau acguuaugaa cucguuuaua agaugugccu agaaaggauu 1381 agaga|---- aaucga-UGA U|CCUU-AGC UG|---AUCU (GAAA--)GG AUGGUCAGU| 1441 CACAGU-GGA AC(UGAA-AU AA-)GGACCA C|ACAAUc-( agag-)-uAU UGG----C-A 1501 GCA|GUG-GG GAAUCUUGGA C-AAUCAGC( ---------- --caaugc)G CUGGA-UCC| 1561 A|-GUCA-A- AU-AGC---- -AUGGAGAAA --AAgc-aa- (--------- -ugc------ 1621 --------)- uuga----UC -UCC|----- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 -----UAAAG GAAAUGAGGA UAA------- -(-------- )--------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- UGACUGAAAU UUCCUGAAUA GUCCC|-GGC 1921 -AAA-U---C UCGU-G(-CC AGCAGCC-GC -GGU-AA)-U ACGAGA|--- -GGG-GCG-- 1981 AGCG-UGAGU CCU--AAUUA UUCGGC|GUA AAGAGUAAA- -AAGGCG|gu aaug------ 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- -gaaggcauc cccugcccgg 2221 gggugucucc uguaauacau auacggucuu uuggucc--- -gugugag|a uguaaac-u- 2281 ------AGAG -UAAAAUAGA -GGAGA--GU -----|AGAA UUGAAA-GUG ---UAAGG(A 2341 UGAAA)UCU- AGA---AAUA UUUU-CAG-G AAU------- ----AUCAAU -AGC(-GAAG 2401 -)GC|A---- ----ACUCUC U-UGGUU-AU UA---CUGAC GCU--GAAUU ACGAA-AGUG 2461 U-GGG---GA GCAAAUCAG( AUUAGAGAC) CUGA-GUAG| -UCCA-CAC- CCUAAA-CGA 2521 U--GAA-UGU |UC|GAAGAG GAU---(-AA UA-------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---)----AU CCCCUUC-CU ACC(UAAC)G GGUUAAACAU 2701 U-C|--C|GC C-UGAG-GAG UAAGAUC(-- -GCAA--)GA UUG--AAACU CAAAAGAU-U 2761 AG|UCGGUC- UCUCAC---A CCAGCAGU|G AAGCAUGA-A |GUUUAA-UU UG(AUGAUAC 2821 G--------- ----)CAAAG A-ACCUUACC UAUCUUUGAC A--------- ---------- 2881 (-------au u-u)------ ---------- -------<-- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ->-------- ---C---AGG CGU-UG|CA- 3121 |UG|-GC--U |G------UC GU-CA|G-UU CGU-|GUU(G --UGA)AACG U----(-u-u 3181 uau)------ ---ACGAACA AAA-CCCCAG ---------- ---------- ---------- 3241 ------ ---|------ --------GU -CAGAGAcCA (ACAU-U)UG UCU-UUUGAA 3781 U----UCA-G GGACUA-CGU C-AAGUCAUU A|UGAC|CCA UAU------- ---------A 3841 G-A-UA-GGG CU-AAA--UU -CGUGCCACU AG--AAGAAA U-ACAA-AGG GA--AACAA- 3901 Uaga<----- -----ggaua auugaacucc guuga----- ---------- ---------- 3961 ---------- ----->(--- -----)acuG -GAGGAAAUC CCU--AAAAU UUC-UUagg- 4021 ---------- -----UUCAG --ACAGG-AC C-U(------ ---------- ---------- 4081 ---------- ---------- UGAAAu-uc) A-GG-U--CC -U--CGAAG- -UAGGAAUUG 4141 C-U--AGUAA U-CGUGAA(- UCAGCCAC-- --)GUCACGG U-GAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -UAA--AAUC 4261 -UGAGA-GA- UGAACUAA-C -CGUCCGUCA U-AGU--CUG GGA-AUCAAU Cug-guu-ug 4321 aaguaggaaa gagacc-aag aaauauca-a aaugg----- --------<- auugaaaa-a 4381 uc-cg-agca cacccguagg guguuuuc-- uaaa-ucucg guc-auggua ucgaaucaaa 4441 ccuc-gaaag ggguguaaga caucaacacc uucaaggcga cguaacacgu cgauuuuugg 4501 gcagauugau ggaugcuuag a>---ggauu guuuuga--a auaagcuuau cgucgauguu 4561 cuauuauuau uGAUUGGUGA CUGG-AUU-A AAGUCGUAGC AAGGUCGG-G UUA-CG(GG- 4621 AA)CGU-GG- UCCGGAAUGG UUAAAUGA-| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS (4)-METAZO 5213 bp RNA RNA 25-JAN-1994 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: DIVIDER BASE COUNT 0 a 0 c 0 g 0 t 5213 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ----|..... .......... .......... 541 .......... .......... .......... .......... .......... .......... 601 .......... .......... .......... .......... .......... .......... 661 .......-.. .......... .......... ..-....... |......... ....-..... 721 .......-.. .....|.... ........-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- ------.... .......... 841 .......... .......... .......... .......... .......... .......... 901 .......... .......... .......... .......... .......... .......... 961 .....-..|. .......... .......... .|........ -......... .....-.... 1021 .......... ....---... ..-..---.. .......... .......... .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .......... .......... .......... .......... .......... 1201 .......... .......... .......... .......... .......... .......... 1261 .......... .......... .........- .......... ..----.... ........-- 1321 .......... .......... .......... .......... .......... .......... 1381 ......---. .......... .......-.. .......... .......... .......... 1441 .......... ........-. ..-....... .......... .......... ........-. 1501 ...|...-.. .......... .......... .......... .......... .....-...| 1561 .......... .......... .......... .......... .--....... .......... 1621 .......... .......... .......... .......... .......... .......... 1681 .......... .......... .......... .......... .......... .......... 1741 .......... .......... .......... .......... .......... .......... 1801 .......... .......... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .......... .......... 1921 .......... .......-.. .......... -.......-. .......... .......... 1981 .....-.... ...--..... .......... .......... -......... .......... 2041 .......... .....----. .......... .......... .....----- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- --------.. .......... .......... .......... 2221 .......... .......... .......... .......... ........|. .......-.. 2281 .......... -......... ......--.. .-........ .......... ---....... 2341 .......... ...-...... ....-..... .......... .......... .......... 2401 ....|..... .......... .......... .......... .......... .....-.... 2461 .....--... .......... .......... .......... .......... .......... 2521 .--....-.. |......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... .......... 2701 .-..-..... .......... .......... .......... .......... .......... 2761 ..|....... .......... ........|. ........-. |......... .......... 2821 .--------- ----...... .-........ .......... .......... .......... 2881 .....---.. ..-....... .......... .......... .......... .......... 2941 .......... .......... .......... .......... .......... .......... 3001 .......... .......... .......... .......... .......... .......... 3061 .......... .......... .......... .......... .--....... ...-.....- 3121 .......--. |......... .......-.. .......... .-........ .........- 3181 .......... .-........ .......... .......... .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .......... .......... .......... 3361 .......... .......... .......... .......... .....--... .......... 3421 .......... .......... .......... .......... .......... .......... 3481 .......... ........-- --........ .......... .......... .......... 3541 .......... .......... .......... .......... .......... .......... 3601 .......... .......... .......... .......... .......... .......... 3661 .......... .......... .......... .......... .......... .......... 3721 .......... .......... .......... .......... .....-.... .......... 3781 .......... .......... .......... ......|... ...------- -------... 3841 ...-..-... ..-....... .......... ..-....... ......-... ..--...... 3901 .......... .......... .......... .......... .......... .......... 3961 .......... .......... ...-...... .......... .......... .......... 4021 ......---. .......... .-........ .-........ .......... .......... 4081 .......... .......... ......-... .......... .........- .......... 4141 .-.-...... .......... .......... .......... .-........ .......... 4201 .......... .......... .......... .......... .......... .......... 4261 .......... .......... .......... .-........ ...-...... .......... 4321 .......... ......-... .........- .......... -......... .........- 4381 .....-.... .......... ........-- ....-..... .......... .......... 4441 .......... .......... .......... .......... .......... .......... 4501 .......... .......... ...--..... ........-- .......... .......... 4561 .......... .......... ........-. .......... ........-. ...-...... 4621 -.....-... .......... .......... .......... .......... .......... 4681 .......... .......... .......... .......... .......... .......... 4741 .......... .......... .......... .......... .......... .......... 4801 .......... .......... .......... .......... .......... .......... 4861 .......... .......... .......... .......... .......... .......... 4921 .......... .......... .......... .......... .......... .......... 4981 .......... .......... .......... .......... .......... .......... 5041 .......... .......... .......... .......... .......... .......... 5101 .......... .......... .......... .......... .......... .......... 5161 .......... .......... .......... .......... ........|| ||| // LOCUS (5)-EUMETA 5213 bp RNA RNA 25-JAN-1994 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: DIVIDER BASE COUNT 0 a 0 c 0 g 0 t 5213 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ----|..... .......... .......... 541 .......... .......... .......... .......... .......... .......... 601 .......... .......... .......... .......... .......... .......... 661 .......-.. .......... .......... ..-....... |......... ....-..... 721 .......-.. .....|.... ........-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- ------.... .......... 841 .......... .......... .......... .......... .......... .......... 901 .......... .......... .......... .......... .......... .......... 961 .....-..|. .......... .......... .|........ -......... .....-.... 1021 .......... ....---... ..-..---.. .......... .......... .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .......... .......... .......... .......... .......... 1201 .......... .......... .......... .......... .......... .......... 1261 .......... .......... .........- .......... ..----.... ........-- 1321 .......... .......... .......... .......... .......... .......... 1381 ......---. .......... .......-.. .......... .......... .......... 1441 .......... ........-. ..-....... .......... .......... ........-. 1501 ...|...-.. .......... .......... .......... .......... .....-...| 1561 .......... .......... .......... .......... .--....... .......... 1621 .......... .......... .......... .......... .......... .......... 1681 .......... .......... .......... .......... .......... .......... 1741 .......... .......... .......... .......... .......... .......... 1801 .......... .......... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .......... .......... 1921 .......... .......-.. .......... -.......-. .......... .......... 1981 .....-.... ...--..... .......... .......... -......... .......... 2041 .......... .....----. .......... .......... .....----- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- --------.. .......... .......... .......... 2221 .......... .......... .......... .......... ........|. .......-.. 2281 .......... -......... ......--.. .-........ .......... ---....... 2341 .......... ...-...... ....-..... .......... .......... .......... 2401 ....|..... .......... .......... .......... .......... .....-.... 2461 .....--... .......... .......... .......... .......... .......... 2521 .--....-.. |......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... .......... 2701 .-..-..... .......... .......... .......... .......... .......... 2761 ..|....... .......... ........|. ........-. |......... .......... 2821 .--------- ----...... .-........ .......... .......... .......... 2881 .....---.. ..-....... .......... .......... .......... .......... 2941 .......... .......... .......... .......... .......... .......... 3001 .......... .......... .......... .......... .......... .......... 3061 .......... .......... .......... .......... .--....... ...-.....- 3121 .......--. |......... .......-.. .......... .-........ .........- 3181 .......... .-........ .......... .......... .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .......... .......... .......... 3361 .......... .......... .......... .......... .....--... .......... 3421 .......... .......... .......... .......... .......... .......... 3481 .......... ........-- --........ .......... .......... .......... 3541 .......... .......... .......... .......... .......... .......... 3601 .......... .......... .......... .......... .......... .......... 3661 .......... .......... .......... .......... .......... .......... 3721 .......... .......... .......... .......... .....-.... .......... 3781 .......... .......... .......... ......|... ...------- -------... 3841 ...-..-... ..-....... .......... ..-....... ......-... ..--...... 3901 .......... .......... .......... .......... .......... .......... 3961 .......... .......... ...-...... .......... .......... .......... 4021 ......---. .......... .-........ .-........ .......... .......... 4081 .......... .......... ......-... .......... .........- .......... 4141 .-.-...... .......... .......... .......... .-........ .......... 4201 .......... .......... .......... .......... .......... .......... 4261 .......... .......... .......... .-........ ...-...... .......... 4321 .......... ......-... .........- .......... -......... .........- 4381 .....-.... .......... ........-- ....-..... .......... .......... 4441 .......... .......... .......... .......... .......... .......... 4501 .......... .......... ...--..... ........-- .......... .......... 4561 .......... .......... ........-. .......... ........-. ...-...... 4621 -.....-... .......... .......... .......... .......... .......... 4681 .......... .......... .......... .......... .......... .......... 4741 .......... .......... .......... .......... .......... .......... 4801 .......... .......... .......... .......... .......... .......... 4861 .......... .......... .......... .......... .......... .......... 4921 .......... .......... .......... .......... .......... .......... 4981 .......... .......... .......... .......... .......... .......... 5041 .......... .......... .......... .......... .......... .......... 5101 .......... .......... .......... .......... .......... .......... 5161 .......... .......... .......... .......... ........|| ||| // LOCUS (6)-BILATE 5213 bp RNA RNA 25-JAN-1994 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: DIVIDER BASE COUNT 0 a 0 c 0 g 0 t 5213 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ----|..... .......... .......... 541 .......... .......... .......... .......... .......... .......... 601 .......... .......... .......... .......... .......... .......... 661 .......-.. .......... .......... ..-....... |......... ....-..... 721 .......-.. .....|.... ........-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- ------.... .......... 841 .......... .......... .......... .......... .......... .......... 901 .......... .......... .......... .......... .......... .......... 961 .....-..|. .......... .......... .|........ -......... .....-.... 1021 .......... ....---... ..-..---.. .......... .......... .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .......... .......... .......... .......... .......... 1201 .......... .......... .......... .......... .......... .......... 1261 .......... .......... .........- .......... ..----.... ........-- 1321 .......... .......... .......... .......... .......... .......... 1381 ......---. .......... .......-.. .......... .......... .......... 1441 .......... ........-. ..-....... .......... .......... ........-. 1501 ...|...-.. .......... .......... .......... .......... .....-...| 1561 .......... .......... .......... .......... .--....... .......... 1621 .......... .......... .......... .......... .......... .......... 1681 .......... .......... .......... .......... .......... .......... 1741 .......... .......... .......... .......... .......... .......... 1801 .......... .......... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .......... .......... 1921 .......... .......-.. .......... -.......-. .......... .......... 1981 .....-.... ...--..... .......... .......... -......... .......... 2041 .......... .....----. .......... .......... .....----- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- --------.. .......... .......... .......... 2221 .......... .......... .......... .......... ........|. .......-.. 2281 .......... -......... ......--.. .-........ .......... ---....... 2341 .......... ...-...... ....-..... .......... .......... .......... 2401 ....|..... .......... .......... .......... .......... .....-.... 2461 .....--... .......... .......... .......... .......... .......... 2521 .--....-.. |......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... .......... 2701 .-..-..... .......... .......... .......... .......... .......... 2761 ..|....... .......... ........|. ........-. |......... .......... 2821 .--------- ----...... .-........ .......... .......... .......... 2881 .....---.. ..-....... .......... .......... .......... .......... 2941 .......... .......... .......... .......... .......... .......... 3001 .......... .......... .......... .......... .......... .......... 3061 .......... .......... .......... .......... .--....... ...-.....- 3121 .......--. |......... .......-.. .......... .-........ .........- 3181 .......... .-........ .......... .......... .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .......... .......... .......... 3361 .......... .......... .......... .......... .....--... .......... 3421 .......... .......... .......... .......... .......... .......... 3481 .......... ........-- --........ .......... .......... .......... 3541 .......... .......... .......... .......... .......... .......... 3601 .......... .......... .......... .......... .......... .......... 3661 .......... .......... .......... .......... .......... .......... 3721 .......... .......... .......... .......... .....-.... .......... 3781 .......... .......... .......... ......|... ...------- -------... 3841 ...-..-... ..-....... .......... ..-....... ......-... ..--...... 3901 .......... .......... .......... .......... .......... .......... 3961 .......... .......... ...-...... .......... .......... .......... 4021 ......---. .......... .-........ .-........ .......... .......... 4081 .......... .......... ......-... .......... .........- .......... 4141 .-.-...... .......... .......... .......... .-........ .......... 4201 .......... .......... .......... .......... .......... .......... 4261 .......... .......... .......... .-........ ...-...... .......... 4321 .......... ......-... .........- .......... -......... .........- 4381 .....-.... .......... ........-- ....-..... .......... .......... 4441 .......... .......... .......... .......... .......... .......... 4501 .......... .......... ...--..... ........-- .......... .......... 4561 .......... .......... ........-. .......... ........-. ...-...... 4621 -.....-... .......... .......... .......... .......... .......... 4681 .......... .......... .......... .......... .......... .......... 4741 .......... .......... .......... .......... .......... .......... 4801 .......... .......... .......... .......... .......... .......... 4861 .......... .......... .......... .......... .......... .......... 4921 .......... .......... .......... .......... .......... .......... 4981 .......... .......... .......... .......... .......... .......... 5041 .......... .......... .......... .......... .......... .......... 5101 .......... .......... .......... .......... .......... .......... 5161 .......... .......... .......... .......... ........|| ||| // LOCUS (7)-COELOM 5213 bp RNA RNA 25-JAN-1994 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: DIVIDER BASE COUNT 0 a 0 c 0 g 0 t 5213 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ----|..... .......... .......... 541 .......... .......... .......... .......... .......... .......... 601 .......... .......... .......... .......... .......... .......... 661 .......-.. .......... .......... ..-....... |......... ....-..... 721 .......-.. .....|.... ........-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- ------.... .......... 841 .......... .......... .......... .......... .......... .......... 901 .......... .......... .......... .......... .......... .......... 961 .....-..|. .......... .......... .|........ -......... .....-.... 1021 .......... ....---... ..-..---.. .......... .......... .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .......... .......... .......... .......... .......... 1201 .......... .......... .......... .......... .......... .......... 1261 .......... .......... .........- .......... ..----.... ........-- 1321 .......... .......... .......... .......... .......... .......... 1381 ......---. .......... .......-.. .......... .......... .......... 1441 .......... ........-. ..-....... .......... .......... ........-. 1501 ...|...-.. .......... .......... .......... .......... .....-...| 1561 .......... .......... .......... .......... .--....... .......... 1621 .......... .......... .......... .......... .......... .......... 1681 .......... .......... .......... .......... .......... .......... 1741 .......... .......... .......... .......... .......... .......... 1801 .......... .......... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .......... .......... 1921 .......... .......-.. .......... -.......-. .......... .......... 1981 .....-.... ...--..... .......... .......... -......... .......... 2041 .......... .....----. .......... .......... .....----- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- --------.. .......... .......... .......... 2221 .......... .......... .......... .......... ........|. .......-.. 2281 .......... -......... ......--.. .-........ .......... ---....... 2341 .......... ...-...... ....-..... .......... .......... .......... 2401 ....|..... .......... .......... .......... .......... .....-.... 2461 .....--... .......... .......... .......... .......... .......... 2521 .--....-.. |......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... .......... 2701 .-..-..... .......... .......... .......... .......... .......... 2761 ..|....... .......... ........|. ........-. |......... .......... 2821 .--------- ----...... .-........ .......... .......... .......... 2881 .....---.. ..-....... .......... .......... .......... .......... 2941 .......... .......... .......... .......... .......... .......... 3001 .......... .......... .......... .......... .......... .......... 3061 .......... .......... .......... .......... .--....... ...-.....- 3121 .......--. |......... .......-.. .......... .-........ .........- 3181 .......... .-........ .......... .......... .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .......... .......... .......... 3361 .......... .......... .......... .......... .....--... .......... 3421 .......... .......... .......... .......... .......... .......... 3481 .......... ........-- --........ .......... .......... .......... 3541 .......... .......... .......... .......... .......... .......... 3601 .......... .......... .......... .......... .......... .......... 3661 .......... .......... .......... .......... .......... .......... 3721 .......... .......... .......... .......... .....-.... .......... 3781 .......... .......... .......... ......|... ...------- -------... 3841 ...-..-... ..-....... .......... ..-....... ......-... ..--...... 3901 .......... .......... .......... .......... .......... .......... 3961 .......... .......... ...-...... .......... .......... .......... 4021 ......---. .......... .-........ .-........ .......... .......... 4081 .......... .......... ......-... .......... .........- .......... 4141 .-.-...... .......... .......... .......... .-........ .......... 4201 .......... .......... .......... .......... .......... .......... 4261 .......... .......... .......... .-........ ...-...... .......... 4321 .......... ......-... .........- .......... -......... .........- 4381 .....-.... .......... ........-- ....-..... .......... .......... 4441 .......... .......... .......... .......... .......... .......... 4501 .......... .......... ...--..... ........-- .......... .......... 4561 .......... .......... ........-. .......... ........-. ...-...... 4621 -.....-... .......... .......... .......... .......... .......... 4681 .......... .......... .......... .......... .......... .......... 4741 .......... .......... .......... .......... .......... .......... 4801 .......... .......... .......... .......... .......... .......... 4861 .......... .......... .......... .......... .......... .......... 4921 .......... .......... .......... .......... .......... .......... 4981 .......... .......... .......... .......... .......... .......... 5041 .......... .......... .......... .......... .......... .......... 5101 .......... .......... .......... .......... .......... .......... 5161 .......... .......... .......... .......... ........|| ||| // LOCUS (8)-DEUTER 5213 bp RNA RNA 25-JAN-1994 DEFINITION DEUTEROSTOMIA. ACCESSION No information KEYWORDS No information. SOURCE DEUTEROSTOMIA. ORGANISM DEUTEROSTOMIA. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: DIVIDER BASE COUNT 0 a 0 c 0 g 0 t 5213 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ----|..... .......... .......... 541 .......... .......... .......... .......... .......... .......... 601 .......... .......... .......... .......... .......... .......... 661 .......-.. .......... .......... ..-....... |......... ....-..... 721 .......-.. .....|.... ........-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- ------.... .......... 841 .......... .......... .......... .......... .......... .......... 901 .......... .......... .......... .......... .......... .......... 961 .....-..|. .......... .......... .|........ -......... .....-.... 1021 .......... ....---... ..-..---.. .......... .......... .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .......... .......... .......... .......... .......... 1201 .......... .......... .......... .......... .......... .......... 1261 .......... .......... .........- .......... ..----.... ........-- 1321 .......... .......... .......... .......... .......... .......... 1381 ......---. .......... .......-.. .......... .......... .......... 1441 .......... ........-. ..-....... .......... .......... ........-. 1501 ...|...-.. .......... .......... .......... .......... .....-...| 1561 .......... .......... .......... .......... .--....... .......... 1621 .......... .......... .......... .......... .......... .......... 1681 .......... .......... .......... .......... .......... .......... 1741 .......... .......... .......... .......... .......... .......... 1801 .......... .......... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .......... .......... 1921 .......... .......-.. .......... -.......-. .......... .......... 1981 .....-.... ...--..... .......... .......... -......... .......... 2041 .......... .....----. .......... .......... .....----- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- --------.. .......... .......... .......... 2221 .......... .......... .......... .......... ........|. .......-.. 2281 .......... -......... ......--.. .-........ .......... ---....... 2341 .......... ...-...... ....-..... .......... .......... .......... 2401 ....|..... .......... .......... .......... .......... .....-.... 2461 .....--... .......... .......... .......... .......... .......... 2521 .--....-.. |......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... .......... 2701 .-..-..... .......... .......... .......... .......... .......... 2761 ..|....... .......... ........|. ........-. |......... .......... 2821 .--------- ----...... .-........ .......... .......... .......... 2881 .....---.. ..-....... .......... .......... .......... .......... 2941 .......... .......... .......... .......... .......... .......... 3001 .......... .......... .......... .......... .......... .......... 3061 .......... .......... .......... .......... .--....... ...-.....- 3121 .......--. |......... .......-.. .......... .-........ .........- 3181 .......... .-........ .......... .......... .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .......... .......... .......... 3361 .......... .......... .......... .......... .....--... .......... 3421 .......... .......... .......... .......... .......... .......... 3481 .......... ........-- --........ .......... .......... .......... 3541 .......... .......... .......... .......... .......... .......... 3601 .......... .......... .......... .......... .......... .......... 3661 .......... .......... .......... .......... .......... .......... 3721 .......... .......... .......... .......... .....-.... .......... 3781 .......... .......... .......... ......|... ...------- -------... 3841 ...-..-... ..-....... .......... ..-....... ......-... ..--...... 3901 .......... .......... .......... .......... .......... .......... 3961 .......... .......... ...-...... .......... .......... .......... 4021 ......---. .......... .-........ .-........ .......... .......... 4081 .......... .......... ......-... .......... .........- .......... 4141 .-.-...... .......... .......... .......... .-........ .......... 4201 .......... .......... .......... .......... .......... .......... 4261 .......... .......... .......... .-........ ...-...... .......... 4321 .......... ......-... .........- .......... -......... .........- 4381 .....-.... .......... ........-- ....-..... .......... .......... 4441 .......... .......... .......... .......... .......... .......... 4501 .......... .......... ...--..... ........-- .......... .......... 4561 .......... .......... ........-. .......... ........-. ...-...... 4621 -.....-... .......... .......... .......... .......... .......... 4681 .......... .......... .......... .......... .......... .......... 4741 .......... .......... .......... .......... .......... .......... 4801 .......... .......... .......... .......... .......... .......... 4861 .......... .......... .......... .......... .......... .......... 4921 .......... .......... .......... .......... .......... .......... 4981 .......... .......... .......... .......... .......... .......... 5041 .......... .......... .......... .......... .......... .......... 5101 .......... .......... .......... .......... .......... .......... 5161 .......... .......... .......... .......... ........|| ||| // LOCUS (9)-CHORDA 5213 bp RNA RNA 25-JAN-1994 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: DIVIDER BASE COUNT 0 a 0 c 0 g 0 t 5213 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ----|..... .......... .......... 541 .......... .......... .......... .......... .......... .......... 601 .......... .......... .......... .......... .......... .......... 661 .......-.. .......... .......... ..-....... |......... ....-..... 721 .......-.. .....|.... ........-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- ------.... .......... 841 .......... .......... .......... .......... .......... .......... 901 .......... .......... .......... .......... .......... .......... 961 .....-..|. .......... .......... .|........ -......... .....-.... 1021 .......... ....---... ..-..---.. .......... .......... .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .......... .......... .......... .......... .......... 1201 .......... .......... .......... .......... .......... .......... 1261 .......... .......... .........- .......... ..----.... ........-- 1321 .......... .......... .......... .......... .......... .......... 1381 ......---. .......... .......-.. .......... .......... .......... 1441 .......... ........-. ..-....... .......... .......... ........-. 1501 ...|...-.. .......... .......... .......... .......... .....-...| 1561 .......... .......... .......... .......... .--....... .......... 1621 .......... .......... .......... .......... .......... .......... 1681 .......... .......... .......... .......... .......... .......... 1741 .......... .......... .......... .......... .......... .......... 1801 .......... .......... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .......... .......... 1921 .......... .......-.. .......... -.......-. .......... .......... 1981 .....-.... ...--..... .......... .......... -......... .......... 2041 .......... .....----. .......... .......... .....----- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- --------.. .......... .......... .......... 2221 .......... .......... .......... .......... ........|. .......-.. 2281 .......... -......... ......--.. .-........ .......... ---....... 2341 .......... ...-...... ....-..... .......... .......... .......... 2401 ....|..... .......... .......... .......... .......... .....-.... 2461 .....--... .......... .......... .......... .......... .......... 2521 .--....-.. |......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... .......... 2701 .-..-..... .......... .......... .......... .......... .......... 2761 ..|....... .......... ........|. ........-. |......... .......... 2821 .--------- ----...... .-........ .......... .......... .......... 2881 .....---.. ..-....... .......... .......... .......... .......... 2941 .......... .......... .......... .......... .......... .......... 3001 .......... .......... .......... .......... .......... .......... 3061 .......... .......... .......... .......... .--....... ...-.....- 3121 .......--. |......... .......-.. .......... .-........ .........- 3181 .......... .-........ .......... .......... .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .......... .......... .......... 3361 .......... .......... .......... .......... .....--... .......... 3421 .......... .......... .......... .......... .......... .......... 3481 .......... ........-- --........ .......... .......... .......... 3541 .......... .......... .......... .......... .......... .......... 3601 .......... .......... .......... .......... .......... .......... 3661 .......... .......... .......... .......... .......... .......... 3721 .......... .......... .......... .......... .....-.... .......... 3781 .......... .......... .......... ......|... ...------- -------... 3841 ...-..-... ..-....... .......... ..-....... ......-... ..--...... 3901 .......... .......... .......... .......... .......... .......... 3961 .......... .......... ...-...... .......... .......... .......... 4021 ......---. .......... .-........ .-........ .......... .......... 4081 .......... .......... ......-... .......... .........- .......... 4141 .-.-...... .......... .......... .......... .-........ .......... 4201 .......... .......... .......... .......... .......... .......... 4261 .......... .......... .......... .-........ ...-...... .......... 4321 .......... ......-... .........- .......... -......... .........- 4381 .....-.... .......... ........-- ....-..... .......... .......... 4441 .......... .......... .......... .......... .......... .......... 4501 .......... .......... ...--..... ........-- .......... .......... 4561 .......... .......... ........-. .......... ........-. ...-...... 4621 -.....-... .......... .......... .......... .......... .......... 4681 .......... .......... .......... .......... .......... .......... 4741 .......... .......... .......... .......... .......... .......... 4801 .......... .......... .......... .......... .......... .......... 4861 .......... .......... .......... .......... .......... .......... 4921 .......... .......... .......... .......... .......... .......... 4981 .......... .......... .......... .......... .......... .......... 5041 .......... .......... .......... .......... .......... .......... 5101 .......... .......... .......... .......... .......... .......... 5161 .......... .......... .......... .......... ........|| ||| // LOCUS (10)-CEPHA 5213 bp RNA RNA 25-JAN-1994 DEFINITION CEPHALOCHORDATA. ACCESSION No information KEYWORDS No information. SOURCE CEPHALOCHORDATA. ORGANISM CEPHALOCHORDATA. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: DIVIDER BASE COUNT 0 a 0 c 0 g 0 t 5213 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ----|..... .......... .......... 541 .......... .......... .......... .......... .......... .......... 601 .......... .......... .......... .......... .......... .......... 661 .......-.. .......... .......... ..-....... |......... ....-..... 721 .......-.. .....|.... ........-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- ------.... .......... 841 .......... .......... .......... .......... .......... .......... 901 .......... .......... .......... .......... .......... .......... 961 .....-..|. .......... .......... .|........ -......... .....-.... 1021 .......... ....---... ..-..---.. .......... .......... .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .......... .......... .......... .......... .......... 1201 .......... .......... .......... .......... .......... .......... 1261 .......... .......... .........- .......... ..----.... ........-- 1321 .......... .......... .......... .......... .......... .......... 1381 ......---. .......... .......-.. .......... .......... .......... 1441 .......... ........-. ..-....... .......... .......... ........-. 1501 ...|...-.. .......... .......... .......... .......... .....-...| 1561 .......... .......... .......... .......... .--....... .......... 1621 .......... .......... .......... .......... .......... .......... 1681 .......... .......... .......... .......... .......... .......... 1741 .......... .......... .......... .......... .......... .......... 1801 .......... .......... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .......... .......... 1921 .......... .......-.. .......... -.......-. .......... .......... 1981 .....-.... ...--..... .......... .......... -......... .......... 2041 .......... .....----. .......... .......... .....----- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- --------.. .......... .......... .......... 2221 .......... .......... .......... .......... ........|. .......-.. 2281 .......... -......... ......--.. .-........ .......... ---....... 2341 .......... ...-...... ....-..... .......... .......... .......... 2401 ....|..... .......... .......... .......... .......... .....-.... 2461 .....--... .......... .......... .......... .......... .......... 2521 .--....-.. |......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... .......... 2701 .-..-..... .......... .......... .......... .......... .......... 2761 ..|....... .......... ........|. ........-. |......... .......... 2821 .--------- ----...... .-........ .......... .......... .......... 2881 .....---.. ..-....... .......... .......... .......... .......... 2941 .......... .......... .......... .......... .......... .......... 3001 .......... .......... .......... .......... .......... .......... 3061 .......... .......... .......... .......... .--....... ...-.....- 3121 .......--. |......... .......-.. .......... .-........ .........- 3181 .......... .-........ .......... .......... .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .......... .......... .......... 3361 .......... .......... .......... .......... .....--... .......... 3421 .......... .......... .......... .......... .......... .......... 3481 .......... ........-- --........ .......... .......... .......... 3541 .......... .......... .......... .......... .......... .......... 3601 .......... .......... .......... .......... .......... .......... 3661 .......... .......... .......... .......... .......... .......... 3721 .......... .......... .......... .......... .....-.... .......... 3781 .......... .......... .......... ......|... ...------- -------... 3841 ...-..-... ..-....... .......... ..-....... ......-... ..--...... 3901 .......... .......... .......... .......... .......... .......... 3961 .......... .......... ...-...... .......... .......... .......... 4021 ......---. .......... .-........ .-........ .......... .......... 4081 .......... .......... ......-... .......... .........- .......... 4141 .-.-...... .......... .......... .......... .-........ .......... 4201 .......... .......... .......... .......... .......... .......... 4261 .......... .......... .......... .-........ ...-...... .......... 4321 .......... ......-... .........- .......... -......... .........- 4381 .....-.... .......... ........-- ....-..... .......... .......... 4441 .......... .......... .......... .......... .......... .......... 4501 .......... .......... ...--..... ........-- .......... .......... 4561 .......... .......... ........-. .......... ........-. ...-...... 4621 -.....-... .......... .......... .......... .......... .......... 4681 .......... .......... .......... .......... .......... .......... 4741 .......... .......... .......... .......... .......... .......... 4801 .......... .......... .......... .......... .......... .......... 4861 .......... .......... .......... .......... .......... .......... 4921 .......... .......... .......... .......... .......... .......... 4981 .......... .......... .......... .......... .......... .......... 5041 .......... .......... .......... .......... .......... .......... 5101 .......... .......... .......... .......... .......... .......... 5161 .......... .......... .......... .......... ........|| ||| // LOCUS mt.B.lance 5213 bp RNA RNA 03-JUL-1998 DEFINITION Mitochondrion Branchiostoma lanceolatum.; 12S ribosomal RNA; 12S rRNA gene; 16S ribosomal RNA; 16S rRNA gene; ATPase 6 gene; ATPase 8 gene; COII gene; COIII gene; cytb gene; cytochrome b; cytochrome c oxidase subunit II; cytochrome c oxidase subunit III; NADH dehydrogenase subunit 2; NADH dehydrogenase subunit 3; NADH dehydrogenase subunit 4; NADH dehydrogenase subunit 4L; NADH dehydrogenase subunit 5; NADH dehydrogenase subunit 6; NADH2 gene; NADH3 gene; NADH4 gene; NADH4L gene; NADH5 gene; NADH6 gene; tRNA-Ala gene; tRNA-Arg gene; tRNA-Asn gene; tRNA-Asp gene; tRNA-Cys gene; tRNA-Gln gene; tRNA-Glu gene; tRNA-Gly gene; tRNA-His gene; tRNA-Ile gene; tRNA-Leu gene; tRNA-Lys gene; tRNA-Met gene; tRNA-Phe gene; tRNA-Pro gene; tRNA-Ser gene; tRNA-Thr gene; tRNA-Trp gene; tRNA-Tyr gene; tRNA-Val gene. ACCESSION Y16474 KEYWORDS 12S ribosomal RNA; 12S rRNA gene; 16S ribosomal RNA; 16S rRNA gene; ATPase 6 gene; ATPase 8 gene; COII gene; COIII gene; cytb gene; cytochrome b; cytochrome c oxidase subunit II; cytochrome c oxidase subunit III; NADH dehydrogenase subunit 2; NADH dehydrogenase subunit 3; NADH dehydrogenase subunit 4; NADH dehydrogenase subunit 4L; NADH dehydrogenase subunit 5; NADH dehydrogenase subunit 6; NADH2 gene; NADH3 gene; NADH4 gene; NADH4L gene; NADH5 gene; NADH6 gene; tRNA-Ala gene; tRNA-Arg gene; tRNA-Asn gene; tRNA-Asp gene; tRNA-Cys gene; tRNA-Gln gene; tRNA-Glu gene; tRNA-Gly gene; tRNA-His gene; tRNA-Ile gene; tRNA-Leu gene; tRNA-Lys gene; tRNA-Met gene; tRNA-Phe gene; tRNA-Pro gene; tRNA-Ser gene; tRNA-Thr gene; tRNA-Trp gene; tRNA-Tyr gene; tRNA-Val gene. SOURCE Mitochondrion Branchiostoma lanceolatum. ORGANISM Mitochondrion Branchiostoma lanceolatum. REFERENCE 1 (bases 1 to 15076) AUTHORS Spruyt,N., Delarbre,C., Gachelin,G. and Laudet,V. TITLE mitochondrial genome : relations to vertebrates Complete sequence of the amphioxus (Branchiostoma lanceolatum) JOURNAL Nucleic Acids Res. 26, 3279-3285 (1998) STANDARD No information REFERENCE 2 (bases 1 to 15076) AUTHORS Laudet,V. TITLE Direct Submission JOURNAL Submitted (11-FEB-1998) V. Laudet, Ecole Normale Superieure de Lyon, CNRS UMR 49, 46 Allee d'Italie, 69364 Lyon Cedex 07, FRANCE STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: Y16474 Related sequence: Y09524. BASE COUNT 257 a 126 c 192 g 269 t 4369 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- -gugcAGAUU 661 (UGA-)U-UC U|GGUUU-CA AUU-AUAAAG -G-GGUU-AC |UG-AU--GA -UAC-A-UGC 721 -UAAU----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------cgu u)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------|- AUGCACCAGU GAGAG---au g|ggg-gcgc --uaaga--- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- --(----guu uaag-)---- 1261 ---------- ---------- --uc--uuaa -cgcaaauug |--------- aAGCAUAU-- 1321 ---------- -----(uauu g--------- ---------- ---------- ------)--- 1381 -----|---- ---uu--auu u|GCUUU-GU --|------- (-cuu--)-- -------AC| 1441 CACU------ ---------- ---------- -|-cuau--( acag-)--ca ag-------A 1501 GCA|GUA-CU UAAUAUUGGU G-AAGGUGU( ---------- ----GAGA)G CAUGC-UUC| 1561 A|-GCA--G- UG-GUUauac u--------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- agugu|-GGC 1921 -aaa-g---A UUGU-G(-CC AGCCGCC-GC -GGU-UA)-C ACcuga---- -aca-aau-- 1981 AUUUA-UAAU A--------- -cacguaucu ------guaa -uuuucaua- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ------gcaa guuaag--au ------u--- --aucu-aa- -----gag-g 2341 ugaug--ucg uau---gcuu ucuc-guuug uaa------- ---------- ---------- 2401 ---------- ----aucuua aaag------ ---------u guu-aauuac ACGAA--GUA 2461 A-AGG---UA UAAACCAGG( AUUAGAGAC) CCUG-CUAU| -UCUU-UAC- ---------- 2521 ---------- |--|------ ------(--- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---)------ ---------- ---------- -----uaguu 2701 a-a|--C|AG U-UGGU-UAG UACGAAU(-- --uau--)GU UUG--AAAAC UAAAGAUU-U 2761 UG|GCAGUG- GGUAAUG-UC UAUUCAGA|G GAGUUUGU-U |CAGUAaaaU CG(AUAAUCC 2821 G--------- ----)CGAGG A--UCUUACU CUAUUUGGUG ---------- ---------- 2881 (--------- uu-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AAC UUA-UA|UA- 3121 |CC|-GC--C |G------UC GU-CA|G-CU AAU-|guc(a --uaa)ggg- -----(ugu- 3181 aa-)------ G-AAUUAGCU AAG-agau-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ---ggau--- 3781 ---------A UCUAAA-CGU C-AGGUCAGG G|UGUA|GUC AAU------- ---------A 3841 G-U-AG-AG- GU-UGG--AA -UGAAUUACA GU--uauu-- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- uag-caaua- 4021 ---------- ------CCGG --AUAUU-AC UcA(------ ---------- ---------- 4081 ---------- ---------- UGAAAC---) U-AG-U--AA -U--UGAAG- -UUGGAUUUG 4141 G-U--UGUAA A-UUUGUA(- UUAUG-AU-- --)GAUAUAU U-GAC----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -ugu--agcg 4261 cUUAUC-UA- UGCACACA-C -CGCCCGUCA U-UUU--CCU g--------- ---------- 4321 ---------- ---------- ---------- ---------- ---------< --aaaucau- 4381 aa-------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- ---------- -AGG-AAA-G AAGUCGUAAC AAGGUAGG-G CAU-CC(GGA 4621 -A)GGA-UC- CCCUGGGGAA UUAUA----| ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- -------~|| ||| // LOCUS (10)-VERTE 5213 bp RNA RNA 25-JAN-1994 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: DIVIDER BASE COUNT 0 a 0 c 0 g 0 t 5213 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ----|..... .......... .......... 541 .......... .......... .......... .......... .......... .......... 601 .......... .......... .......... .......... .......... .......... 661 .......-.. .......... .......... ..-....... |......... ....-..... 721 .......-.. .....|.... ........-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- ------.... .......... 841 .......... .......... .......... .......... .......... .......... 901 .......... .......... .......... .......... .......... .......... 961 .....-..|. .......... .......... .|........ -......... .....-.... 1021 .......... ....---... ..-..---.. .......... .......... .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .......... .......... .......... .......... .......... 1201 .......... .......... .......... .......... .......... .......... 1261 .......... .......... .........- .......... ..----.... ........-- 1321 .......... .......... .......... .......... .......... .......... 1381 ......---. .......... .......-.. .......... .......... .......... 1441 .......... ........-. ..-....... .......... .......... ........-. 1501 ...|...-.. .......... .......... .......... .......... .....-...| 1561 .......... .......... .......... .......... .--....... .......... 1621 .......... .......... .......... .......... .......... .......... 1681 .......... .......... .......... .......... .......... .......... 1741 .......... .......... .......... .......... .......... .......... 1801 .......... .......... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .......... .......... 1921 .......... .......-.. .......... -.......-. .......... .......... 1981 .....-.... ...--..... .......... .......... -......... .......... 2041 .......... .....----. .......... .......... .....----- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- --------.. .......... .......... .......... 2221 .......... .......... .......... .......... ........|. .......-.. 2281 .......... -......... ......--.. .-........ .......... ---....... 2341 .......... ...-...... ....-..... .......... .......... .......... 2401 ....|..... .......... .......... .......... .......... .....-.... 2461 .....--... .......... .......... .......... .......... .......... 2521 .--....-.. |......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... .......... 2701 .-..-..... .......... .......... .......... .......... .......... 2761 ..|....... .......... ........|. ........-. |......... .......... 2821 .--------- ----...... .-........ .......... .......... .......... 2881 .....---.. ..-....... .......... .......... .......... .......... 2941 .......... .......... .......... .......... .......... .......... 3001 .......... .......... .......... .......... .......... .......... 3061 .......... .......... .......... .......... .--....... ...-.....- 3121 .......--. |......... .......-.. .......... .-........ .........- 3181 .......... .-........ .......... .......... .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .......... .......... .......... 3361 .......... .......... .......... .......... .....--... .......... 3421 .......... .......... .......... .......... .......... .......... 3481 .......... ........-- --........ .......... .......... .......... 3541 .......... .......... .......... .......... .......... .......... 3601 .......... .......... .......... .......... .......... .......... 3661 .......... .......... .......... .......... .......... .......... 3721 .......... .......... .......... .......... .....-.... .......... 3781 .......... .......... .......... ......|... ...------- -------... 3841 ...-..-... ..-....... .......... ..-....... ......-... ..--...... 3901 .......... .......... .......... .......... .......... .......... 3961 .......... .......... ...-...... .......... .......... .......... 4021 ......---. .......... .-........ .-........ .......... .......... 4081 .......... .......... ......-... .......... .........- .......... 4141 .-.-...... .......... .......... .......... .-........ .......... 4201 .......... .......... .......... .......... .......... .......... 4261 .......... .......... .......... .-........ ...-...... .......... 4321 .......... ......-... .........- .......... -......... .........- 4381 .....-.... .......... ........-- ....-..... .......... .......... 4441 .......... .......... .......... .......... .......... .......... 4501 .......... .......... ...--..... ........-- .......... .......... 4561 .......... .......... ........-. .......... ........-. ...-...... 4621 -.....-... .......... .......... .......... .......... .......... 4681 .......... .......... .......... .......... .......... .......... 4741 .......... .......... .......... .......... .......... .......... 4801 .......... .......... .......... .......... .......... .......... 4861 .......... .......... .......... .......... .......... .......... 4921 .......... .......... .......... .......... .......... .......... 4981 .......... .......... .......... .......... .......... .......... 5041 .......... .......... .......... .......... .......... .......... 5101 .......... .......... .......... .......... .......... .......... 5161 .......... .......... .......... .......... ........|| ||| // LOCUS (11)-AGNAT 5213 bp RNA RNA 25-JAN-1994 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: DIVIDER BASE COUNT 0 a 0 c 0 g 0 t 5213 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ----|..... .......... .......... 541 .......... .......... .......... .......... .......... .......... 601 .......... .......... .......... .......... .......... .......... 661 .......-.. .......... .......... ..-....... |......... ....-..... 721 .......-.. .....|.... ........-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- ------.... .......... 841 .......... .......... .......... .......... .......... .......... 901 .......... .......... .......... .......... .......... .......... 961 .....-..|. .......... .......... .|........ -......... .....-.... 1021 .......... ....---... ..-..---.. .......... .......... .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .......... .......... .......... .......... .......... 1201 .......... .......... .......... .......... .......... .......... 1261 .......... .......... .........- .......... ..----.... ........-- 1321 .......... .......... .......... .......... .......... .......... 1381 ......---. .......... .......-.. .......... .......... .......... 1441 .......... ........-. ..-....... .......... .......... ........-. 1501 ...|...-.. .......... .......... .......... .......... .....-...| 1561 .......... .......... .......... .......... .--....... .......... 1621 .......... .......... .......... .......... .......... .......... 1681 .......... .......... .......... .......... .......... .......... 1741 .......... .......... .......... .......... .......... .......... 1801 .......... .......... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .......... .......... 1921 .......... .......-.. .......... -.......-. .......... .......... 1981 .....-.... ...--..... .......... .......... -......... .......... 2041 .......... .....----. .......... .......... .....----- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- --------.. .......... .......... .......... 2221 .......... .......... .......... .......... ........|. .......-.. 2281 .......... -......... ......--.. .-........ .......... ---....... 2341 .......... ...-...... ....-..... .......... .......... .......... 2401 ....|..... .......... .......... .......... .......... .....-.... 2461 .....--... .......... .......... .......... .......... .......... 2521 .--....-.. |......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... .......... 2701 .-..-..... .......... .......... .......... .......... .......... 2761 ..|....... .......... ........|. ........-. |......... .......... 2821 .--------- ----...... .-........ .......... .......... .......... 2881 .....---.. ..-....... .......... .......... .......... .......... 2941 .......... .......... .......... .......... .......... .......... 3001 .......... .......... .......... .......... .......... .......... 3061 .......... .......... .......... .......... .--....... ...-.....- 3121 .......--. |......... .......-.. .......... .-........ .........- 3181 .......... .-........ .......... .......... .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .......... .......... .......... 3361 .......... .......... .......... .......... .....--... .......... 3421 .......... .......... .......... .......... .......... .......... 3481 .......... ........-- --........ .......... .......... .......... 3541 .......... .......... .......... .......... .......... .......... 3601 .......... .......... .......... .......... .......... .......... 3661 .......... .......... .......... .......... .......... .......... 3721 .......... .......... .......... .......... .....-.... .......... 3781 .......... .......... .......... ......|... ...------- -------... 3841 ...-..-... ..-....... .......... ..-....... ......-... ..--...... 3901 .......... .......... .......... .......... .......... .......... 3961 .......... .......... ...-...... .......... .......... .......... 4021 ......---. .......... .-........ .-........ .......... .......... 4081 .......... .......... ......-... .......... .........- .......... 4141 .-.-...... .......... .......... .......... .-........ .......... 4201 .......... .......... .......... .......... .......... .......... 4261 .......... .......... .......... .-........ ...-...... .......... 4321 .......... ......-... .........- .......... -......... .........- 4381 .....-.... .......... ........-- ....-..... .......... .......... 4441 .......... .......... .......... .......... .......... .......... 4501 .......... .......... ...--..... ........-- .......... .......... 4561 .......... .......... ........-. .......... ........-. ...-...... 4621 -.....-... .......... .......... .......... .......... .......... 4681 .......... .......... .......... .......... .......... .......... 4741 .......... .......... .......... .......... .......... .......... 4801 .......... .......... .......... .......... .......... .......... 4861 .......... .......... .......... .......... .......... .......... 4921 .......... .......... .......... .......... .......... .......... 4981 .......... .......... .......... .......... .......... .......... 5041 .......... .......... .......... .......... .......... .......... 5101 .......... .......... .......... .......... .......... .......... 5161 .......... .......... .......... .......... ........|| ||| // LOCUS mt.Pet.mar 5213 bp RNA RNA 11-JAN-191 DEFINITION Mitochondrion Petromyzon marinus. ACCESSION No information KEYWORDS No information. SOURCE Mitochondrion Petromyzon marinus. ORGANISM Mitochondrion Petromyzon marinus. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: U11880 DEFINITION Petromyzon marinus mitochondrion, complete genome. SOURCE sea lamprey ORGANISM Mitochondrion Petromyzon marinus Eukaryotae; Hyperchondria; Eukaryote crown group; Metazoa/Eumycota group; Metazoa; Eumetazoa; Bilateria; Coelomata; Deuterostomia; Chordata; Vertebrata; Petromyzontiformes; Petromyzontidae; Petromyzon. REFERENCE 1 (bases 1 to 16201) AUTHORS Lee,W.-J. and Kocher,T.D. TITLE Complete sequence of a sea lamprey (Petromyzon marinus) mitochondrial genome: A unique gene order and significance for the evolution of mitochondrial genome structure JOURNAL Unpublished REFERENCE 2 (bases 1 to 16201) AUTHORS Lee,W.-J. TITLE Direct Submission JOURNAL Submitted (06-JUL-1994) Woo-Jai Lee, Zoology, University of New Hampshire, Spaulding Life Science Building, Durham, NH 03824, USA COMMENT NCBI gi: 515484 FEATURES Location/Qualifiers tRNA complement(1195..1265) /product="tRNA-Pro" /anticodon=(pos:1231..1233,aa:Pro) tRNA 1276..1343 /product="tRNA-Phe" /anticodon=(pos:1309..1311,aa:Phe) rRNA 1344..2243 /product="12S ribosomal RNA" tRNA 2244..2314 /product="tRNA-Val" /anticodon=(pos:2276..2278,aa:Val) rRNA 2315..3935 /product="16S ribosomal RNA" tRNA 3936..4009 /product="tRNA-Leu" /anticodon=(pos:3971..3973,aa:Leu) /note="UUR" tRNA 5003..5071 /product="tRNA-Ile" /anticodon=(pos:5033..5035,aa:Ile) tRNA complement(5074..5144) /product="tRNA-Gln" /anticodon=(pos:5110..5112,aa:Gln) tRNA 5145..5212 /product="tRNA-Met" /anticodon=(pos:5176..5178,aa:Met) tRNA 6256..6323 /product="tRNA-Trp" /anticodon=(pos:6285..6287,aa:Trp) tRNA complement(6325..6393) /product="tRNA-Ala" /anticodon=(pos:6334..6336,aa:Ala) tRNA complement(6397..6465) /product="tRNA-Asn" /anticodon=(pos:6434..6436,aa:Asn) tRNA complement(6467..6532) /product="tRNA-Cys" /anticodon=(pos:6502..6504,aa:Cys) tRNA complement(6538..6608) /product="tRNA-Tyr" /anticodon=(pos:6574..6576,aa:Tyr) tRNA complement(8154..8224) /product="tRNA-Ser" /anticodon=(pos:8189..8191,aa:Ser) /note="UCN" tRNA 8226..8294 /product="tRNA-Asp" /anticodon=(pos:8256..8258,aa:Asp) tRNA 8996..9061 /product="tRNA-Lys" /anticodon=(pos:9024..9026,aa:Lys) tRNA 10695..10764 /product="tRNA-Gly" /anticodon=(pos:10725..10727,aa:Gly) tRNA 11120..11185 /product="tRNA-Arg" /anticodon=(pos:11150..11152,aa:Arg) tRNA 12856..12924 /product="tRNA-His" /anticodon=(pos:12886..12888,aa:His) tRNA 12925..12994 /product="tRNA-Ser" /anticodon=(pos:12952..12954,aa:Ser) /note="AGY" tRNA 12995..13066 /product="tRNA-Leu" /anticodon=(pos:13028..13030,aa:Leu) /note="CUN" D-loop 15368..15858 tRNA 15859..15930 /product="tRNA-Thr" /anticodon=(pos:15891..15893,aa:Thr) tRNA complement(15932..16002) /product="tRNA-Glu" /anticodon=(pos:15968..15970,aa:Glu) repeat_region 16003..16201 source 1..16201 /organism="Petromyzon marinus" /dev_stage="adult" /mitochondrion CDS 1..1191 /note="NCBI gi: 515485" /product="cytochrome b" /codon_start=1 /translation="MSHQPSIIRKTHPLLSLGNSMLVDLPSPANISAWWNFGSLLSLC LILQIITGLILAMHYTANTELAFSSVMHICRDVNNGWLMRNLHANGASMFFICIYAHI GRGIYYGSYLYKETWNVGVILFALTAATAFVGYVLPWGQMSFWGATVITNLISAMPYV GNDIVVWLWGGFSVSNATLTRFFTFHFILPFILAAMTMIHIMFLHQTGSSNPMGINSN LDKIQFHPYFSFKDILGFVILLGILFMISLLAPNALGEPDNFIYANPLSTPPHIKPEW YFLFAYAILRSVPNKLGGVVALAAAIMILLIIPFTHTSKQRGMQFRPLAQITFWILIA DLALLTWLGGEPAEYPFILMTQIASTVYFMIFILVFPILGYLENKMLLMSKNTGKFNW KLVY" CDS 4014..4979 /note="NCBI gi: 515486" /product="NADH dehydrogenase subunit 1" /codon_start=1 /translation="MLIMLTSTLILVLMVLLAVAFLTMVERKTLGYMQLRKGPNVVGF MGLLQPIADGVKLFLKEPVWPLAASPILFIVAPIMALTLALSLWMLIPMPQSISTINI TLLVIMAISSLSVYAILGSGWASNSKYALIGALRAVAQTISYEVSLGLILLCLVILTG SFSLQAFIYTQEHTWFLLSSWPLAAMWFVSTLAETNRTPFDLTEGESELVSGFNVEYA GGPFALFFLAEYSNILFMNTLTAIMFLGPLGSNNLNILPIINIMMKATPLIILFLWIR ASYPRFRYDQLMHLMWKNFLPLNLALFTLQLSLAVSFGGAGVPQM" CDS 5214..6257 /note="NCBI gi: 515487" /product="NADH dehydrogenase subunit 2" /codon_start=1 /translation="MLSPLIQSTLLMTLGLGTLVTFSSTSWILAWIGLEINTIAIIPL MAKTHHPRSIEATTKYFIAQSAGSATLLITACLTAWYSGNWAISPSNDPIILNAMTLA LMLKLGMAPMHFWLPEVMVGLDFITGMILATWQKLAPITLLIQIAQDQNNMFILIPAL LSVFVGGWGGLNQTQTRKILAYSSIAHMGWITSMAPFNPTITWLTTLIYCLITSATFI NLHILKANKITALTMNKHNQISQMLLLLLLLSLGGLPPLTGFINKLLASIELANQNLI IYLFMMMMGSLLSLFFYTRMCYLSIILSPPCSTTNLILWRVVSNKPMTLITMLSTNLF IMTPQLLAVFTLH" CDS 6610..8163 /note="GTG start codon. NCBI gi: 515488." /product="cytochrome oxidase subunit I" /codon_start=1 /translation="MTHIRWLFSTNHKDIGTLYLIFGAWAGMVGTALSILIRAELSQP GTLLGDDQIFNVIVTAHAFVMIFFMVMPIMIGGFGNWLVPLMLGAPDMAFPRMNNMSF WLLPPSLLLLLASAGVEAGAGTGWTVYPPLAGNLAHTGASVDLTIFSLHLAGVSSILG AVNFITTIFNMKPPTMTQYQTPLFVWSVLITAVLLLLSLPVLAAAITMLLTDRNLNTS FFDPAGGGDPILYQHLFWFFGHPEVYILILPGFGIISHVVAYYAGKKEPFGYMGMVWA MMAIGLLGFIVWAHHMFTVGMDVDTRAYFTSATMIIAIPTGVKVFSWLATLHGGKIVW HTPMLWALGFIFLFTVGGLTGIVLSNSSLDIILHDTYYVVAHFHYVLSMGAVFAIMAG FVHWFPLFTGYTLNETWAKAHFIIMFAGVNLTFFPQHFLGLAGMPRRYSDYPDAYTTW NIISSIGSTVSLIAVMLFMFILWEAFSAKRKAIATDLLNTNLEWLHGCPPPYHTYEEP AFVQTNFKK" CDS 8298..8987 /note="NCBI gi: 515489" /product="cytochrome oxidase subunit II" /codon_start=1 /translation="MAQQAQLGLQDAASPIMEELIHFHDHTLTVVFLISVLIFYLIIV MVTTTFMNKHSLDSQEVEIVWTVMPAIVLITIALPSLRILYLTDEISNPHLTIKAVGH QWYWSYEYTDYHQMEFDSYMIPTNELEPGGIRLLDVDHRIVVPMESPVRMLITSEDVI HSWTIPSLGTKVDAVPGRLNQATFITTRPGLFFGQCSEICGANHSFMPIALEAVPLSN FENWTTKVLAS" CDS 9064..9231 /note="NCBI gi: 515490" /product="ATPase 8" /codon_start=1 /translation="MPQLDPAPWFSMLTVSWLIIFLLIMPTILFYQPQNTISTKQVTK PKQSTWTWPWH" CDS 9222..9935 /note="NCBI gi: 515491" /product="ATPase 6" /codon_start=1 /translation="MTLDIFDQFTSPTMFGLPLAWLAMLAPSLMLVSQTPKFIKSRYH TLLTPILTSIAKQLFLPMNQQGHKWALICMASMMFILMINLLGLLPYTYTPTTQLSMN MGLAVPLWLATVLIGLQKKPTEALAHLLPEGTPAALIPMLIIIETISLFIRPIALGVR LTANLTAGHLLMQLVSMTTFVMIPVISISIITSLLLLLLTILELAVAVIQAYVFILLL TLYLQENVYVPPSSCMPHG" CDS 9901..10686 /note="NCBI gi: 515492" /product="cytochrome oxidase subunit III" /codon_start=1 /translation="MSHQAHAYHMVDPSPWPLTGAGAALLMTSGLAMWFHKNSCILMT LGLILMLLTMYQWWRDIVREGTFLGHHTSPVQQGLRYGMILFIISEVCFFAGFFWAFY HASLAPTPELGLTWPPTGINPLNPFEVPLLNTAVLLASGVSVTWAHHSITEKNRTETT QALTLTVLLGLYFTALQIMEYYETPFTMADGVYGSTFFVATGFHGLHVIIGSLFLLTC LLRHLQYHFTSKHHFGFEAAAWYWHFVDVVWLFLYISIYWWGS" CDS 10765..11115 /note="NCBI gi: 515493" /product="NADH dehydrogenase subunit 3" /codon_start=1 /translation="MNSFMVMIMLTLTLSSIMALLAFWLPIMKPDSEKLSPYECGFDP QGSARLPFSLRFFLVAILFLLFDLEIALLLPSPWATNISNPEFTLLWASLFVLLLTLG LIYEWLQGGLDWAE" CDS 11194..11484 /note="NCBI gi: 515494" /product="NADH dehydrogenase subunit 4L" /codon_start=1 /translation="MPTTLIFTSFFLALLGLSLQRKHLLSLLLTLESMALALYVSTAL WALNNTSLPIMAAPLIILTFSACEAGMGLSLMIATARTHNTDQLKALNLLKC" CDS 11478..12854 /note="NCBI gi: 515495" /product="NADH dehydrogenase subunit 4" /codon_start=1 /translation="MLKLIIPSIMLIPMTFLINKKSLLWTATTFFSFLIAALSTLTLN MDVAEHNSTNPLLSIDQFSCPLIMLSCWLLPLTIMGSQAHMKTEPITRQKTMISLLIL LQVLLCITFGASNLLMFYIAFETTLIPTLLIITRWGNQKERLTAGLYFLFYTLSASLP LLLALIMIQTHLNSLSIYIIPLSNLTLLLNTPWSETLWWIACFLAFLIKMPLYIFHLW LPKAHVEAPIAGSMILAAILLKLGGYGMIRMSSLFIPLTKDLAVPFMIIAMWGMIVTS SICLRQTDLKSMIAYSSVSHMGLVVAGIFTMTPWAWSGALAMMIAHGLVSSGLLCLAN ITYERTHTRSIFMNRGLKTLFPLMSFWWLMMTFANMALPPFPNFMAEILIITSLFNWS NWTILLLGLSMTLTALFSLNMLIMTQHEHPNKHAPVNPSTTREHLLMLMHMAPIILLI ANPSAIMI" CDS 13068..14864 /note="NCBI gi: 515496" /product="NADH dehydrogenase subunit 5" /codon_start=1 /translation="MNSHYLTLIMNSGALLTIIVLLPPIIMPKPSMILTTKLVKISMF ISLIPLTIYLNENMETTLTMKPWMDWALFNIALSFKIDKYTVIFTPIALMITWSIMEF SQWYMAKERHMDKFFKYLLLFLITMITFISANNLLQLFIGWEGVGIMSFLLISWWSGR TKANISALQAVAYNRIGDIGLMMSMVWMCSNTNSWDLQQITMLLSDQQYLIPTLGFLI AATGKSAQFGLHPWLPAAMEGPTPVSALLHSSTMVVAGVFLLIRLHPLFQNYPLMLEM TLCLGAMTTICAALCATTQNDIKKIIAFSTSSQLGLMMVAVGLNHPHIAFLHMCTHAF FKAMLFLCSGSIIHNMNNEQDIRKFSCLNNNLPLTTTCMTIGSAALMGLPFLAGFFTK DLILEALNTSYTNAWALMVTLMAVTLTTAYSSRLIIMSASGTPRYLPLTPTHENNFIK NPLKRLAWGSLISGLILTSTLPPMKPQIFTMPTYIKTIALMMFIISLIISMELTNKKI NQTTFSFFTQLAFYPHIIHRLTSHLSLIWSQKLMTQVMDVSWLEKIGPKGLANHQLKP STTLTEAHHLNSATLPLMAFALTLITLSLTAR" CDS complement(14849..15367) /note="NCBI gi: 515497" /product="NADH dehydrogenase subunit 6" /codon_start=1 /translation="MLSLVLCFFVMFLLGVAVVVLSPSPYFSALGLVFVAVSGCFIVL YHGGTFLSLVLVLLYLGGMMVVFVYSAALAADPYPEVLGGRVIWFFVICVLCICFAGY MSFNDFFLDVSVACEGADYTGGIFGAEWLGVTTFYEVGLILVLAGWALLVCLFSVLVV VRGVNRGALRAV" BASE COUNT 301 a 234 c 168 g 197 t 4313 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ----|----- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --caaAGGAU 661 (UAG-)U-UC C|AGCCU-UA AUA-UCAACU ---AUAU-AU |GAaau--ua -CAC-A-UGC 721 -AAGu----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------uuc c)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------|- gCACUCCCGU GAGGA--cCU C|CUU-Uaa- --cu-au--- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- --(-----aa ac---)---- 1261 ---------- ---------- --au--aa-- --aAAAGAGA |--------- uGGUAUCA-- 1321 -GGCuc-ac- -----(aaaa a--------- ---------- ---------- ------)--- 1381 --guc|---A GCCCA--CAA C|ACCUA-gc --|------- (--ca--)-- -------cC| 1441 CACA------ ---------- ---------- -|-CCCU--( CAAG-)--GG UAcu---C-A 1501 GCA|GUG-AU AAACCUUAAG C-AAUGGGC( ---------- ----GCAA)G CCCGA-CUA| 1561 A|-GUU--A- CA-UAUuuua ---------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- GAGCU|-GGU 1921 -AAA-C---C UCGU-G(-CC AGCCACC-GC -GGU-UA)-U ACGAGG|--- -AGC-UCA-- 1981 AGCUG-AUAU C--------- ucCGGC|acA AAGCGUGAUU -A-aaa---- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 --uauuuagc -uuaauuaau acuaua--ga -----|Agcc aucaug-ccu ----gCUA(G 2341 UUAAA)UAGG UA-------u gccu-aagua --u------- ----cccaac -aUC(-GAAA 2401 -)GA|a---- ----ucuaua uuaauaagc- -ucac----- uuu-gauaUC ACGAA-Agca 2461 aaacu---CA CAAACCGGG( AUUAGAUAC) CCCG-CUAU| -gccu--gc- CAUAAA--ua 2521 a--------- |--|------ ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------a caa-ccgu-- ---------- 2701 ---|--C|GC C-aGGG-CAC UACGAAC(-- -AAUC--)GU UUA--AAACC CAAAGAAC-U 2761 UG|ACGGCA- CCCUAAA-CC CACCUAGA|G GAGCCUGU-C |CUAUAA-CC CG(AUACUCC 2821 A--------- ----)CGUUU U-ACCCAACC GCCUCUCGCC ---------- ---------- 2881 (--------- cc-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGU CUA-UA|UA- 3121 |CC|-GC--C |G------UC GC-CA|G-CC AAC-|CUU(A --UAA)AAG- -----(aau- 3181 aa-)------ c-cGUAGGCA AAA-aagu-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- -cuaucuau- 3781 ---------a caaauA-CGU C-AGGUCGAG G|UGCA|ACC UAU------- ---------G 3841 A-G-GC-AG- GC-AGA--GA -UGGGCUACA CU--CUCU-- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--a ccc--)---- ---------- ---------- -AG-AGua-- 4021 ---------- -----uaCGA --AUaau-uu a-a(------ ---------- ---------- 4081 ---------- ---------- UGAAA----) a-aa-u--uu -u--GAAGG- --UGGAUUUA 4141 G-C--AGUAA A-CAAGAA(- -uagu-uu-- --)GUCUAGU U-GAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -guu--gcca 4261 cUAGGG-UG- CGUACACA-C -CGCCCGUCA C-UCU--CC- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------< ----cccca- 4381 caccc----- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- ---------- --gG-AGA-A AAGUCGUAAC AUGGUAAG-C GUA-CC(GGA 4621 -A)GGU-GC- GCUUGGAaaa ---------| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS (11)-GNATH 5213 bp RNA RNA 25-JAN-1994 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: DIVIDER BASE COUNT 0 a 0 c 0 g 0 t 5213 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ----|..... .......... .......... 541 .......... .......... .......... .......... .......... .......... 601 .......... .......... .......... .......... .......... .......... 661 .......-.. .......... .......... ..-....... |......... ....-..... 721 .......-.. .....|.... ........-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- ------.... .......... 841 .......... .......... .......... .......... .......... .......... 901 .......... .......... .......... .......... .......... .......... 961 .....-..|. .......... .......... .|........ -......... .....-.... 1021 .......... ....---... ..-..---.. .......... .......... .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .......... .......... .......... .......... .......... 1201 .......... .......... .......... .......... .......... .......... 1261 .......... .......... .........- .......... ..----.... ........-- 1321 .......... .......... .......... .......... .......... .......... 1381 ......---. .......... .......-.. .......... .......... .......... 1441 .......... ........-. ..-....... .......... .......... ........-. 1501 ...|...-.. .......... .......... .......... .......... .....-...| 1561 .......... .......... .......... .......... .--....... .......... 1621 .......... .......... .......... .......... .......... .......... 1681 .......... .......... .......... .......... .......... .......... 1741 .......... .......... .......... .......... .......... .......... 1801 .......... .......... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .......... .......... 1921 .......... .......-.. .......... -.......-. .......... .......... 1981 .....-.... ...--..... .......... .......... -......... .......... 2041 .......... .....----. .......... .......... .....----- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- --------.. .......... .......... .......... 2221 .......... .......... .......... .......... ........|. .......-.. 2281 .......... -......... ......--.. .-........ .......... ---....... 2341 .......... ...-...... ....-..... .......... .......... .......... 2401 ....|..... .......... .......... .......... .......... .....-.... 2461 .....--... .......... .......... .......... .......... .......... 2521 .--....-.. |......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... .......... 2701 .-..-..... .......... .......... .......... .......... .......... 2761 ..|....... .......... ........|. ........-. |......... .......... 2821 .--------- ----...... .-........ .......... .......... .......... 2881 .....---.. ..-....... .......... .......... .......... .......... 2941 .......... .......... .......... .......... .......... .......... 3001 .......... .......... .......... .......... .......... .......... 3061 .......... .......... .......... .......... .--....... ...-.....- 3121 .......--. |......... .......-.. .......... .-........ .........- 3181 .......... .-........ .......... .......... .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .......... .......... .......... 3361 .......... .......... .......... .......... .....--... .......... 3421 .......... .......... .......... .......... .......... .......... 3481 .......... ........-- --........ .......... .......... .......... 3541 .......... .......... .......... .......... .......... .......... 3601 .......... .......... .......... .......... .......... .......... 3661 .......... .......... .......... .......... .......... .......... 3721 .......... .......... .......... .......... .....-.... .......... 3781 .......... .......... .......... ......|... ...------- -------... 3841 ...-..-... ..-....... .......... ..-....... ......-... ..--...... 3901 .......... .......... .......... .......... .......... .......... 3961 .......... .......... ...-...... .......... .......... .......... 4021 ......---. .......... .-........ .-........ .......... .......... 4081 .......... .......... ......-... .......... .........- .......... 4141 .-.-...... .......... .......... .......... .-........ .......... 4201 .......... .......... .......... .......... .......... .......... 4261 .......... .......... .......... .-........ ...-...... .......... 4321 .......... ......-... .........- .......... -......... .........- 4381 .....-.... .......... ........-- ....-..... .......... .......... 4441 .......... .......... .......... .......... .......... .......... 4501 .......... .......... ...--..... ........-- .......... .......... 4561 .......... .......... ........-. .......... ........-. ...-...... 4621 -.....-... .......... .......... .......... .......... .......... 4681 .......... .......... .......... .......... .......... .......... 4741 .......... .......... .......... .......... .......... .......... 4801 .......... .......... .......... .......... .......... .......... 4861 .......... .......... .......... .......... .......... .......... 4921 .......... .......... .......... .......... .......... .......... 4981 .......... .......... .......... .......... .......... .......... 5041 .......... .......... .......... .......... .......... .......... 5101 .......... .......... .......... .......... .......... .......... 5161 .......... .......... .......... .......... ........|| ||| // LOCUS (12)-CHOND 5213 bp RNA RNA 25-JAN-1994 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: DIVIDER BASE COUNT 0 a 0 c 0 g 0 t 5213 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ----|..... .......... .......... 541 .......... .......... .......... .......... .......... .......... 601 .......... .......... .......... .......... .......... .......... 661 .......-.. .......... .......... ..-....... |......... ....-..... 721 .......-.. .....|.... ........-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- ------.... .......... 841 .......... .......... .......... .......... .......... .......... 901 .......... .......... .......... .......... .......... .......... 961 .....-..|. .......... .......... .|........ -......... .....-.... 1021 .......... ....---... ..-..---.. .......... .......... .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .......... .......... .......... .......... .......... 1201 .......... .......... .......... .......... .......... .......... 1261 .......... .......... .........- .......... ..----.... ........-- 1321 .......... .......... .......... .......... .......... .......... 1381 ......---. .......... .......-.. .......... .......... .......... 1441 .......... ........-. ..-....... .......... .......... ........-. 1501 ...|...-.. .......... .......... .......... .......... .....-...| 1561 .......... .......... .......... .......... .--....... .......... 1621 .......... .......... .......... .......... .......... .......... 1681 .......... .......... .......... .......... .......... .......... 1741 .......... .......... .......... .......... .......... .......... 1801 .......... .......... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .......... .......... 1921 .......... .......-.. .......... -.......-. .......... .......... 1981 .....-.... ...--..... .......... .......... -......... .......... 2041 .......... .....----. .......... .......... .....----- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- --------.. .......... .......... .......... 2221 .......... .......... .......... .......... ........|. .......-.. 2281 .......... -......... ......--.. .-........ .......... ---....... 2341 .......... ...-...... ....-..... .......... .......... .......... 2401 ....|..... .......... .......... .......... .......... .....-.... 2461 .....--... .......... .......... .......... .......... .......... 2521 .--....-.. |......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... .......... 2701 .-..-..... .......... .......... .......... .......... .......... 2761 ..|....... .......... ........|. ........-. |......... .......... 2821 .--------- ----...... .-........ .......... .......... .......... 2881 .....---.. ..-....... .......... .......... .......... .......... 2941 .......... .......... .......... .......... .......... .......... 3001 .......... .......... .......... .......... .......... .......... 3061 .......... .......... .......... .......... .--....... ...-.....- 3121 .......--. |......... .......-.. .......... .-........ .........- 3181 .......... .-........ .......... .......... .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .......... .......... .......... 3361 .......... .......... .......... .......... .....--... .......... 3421 .......... .......... .......... .......... .......... .......... 3481 .......... ........-- --........ .......... .......... .......... 3541 .......... .......... .......... .......... .......... .......... 3601 .......... .......... .......... .......... .......... .......... 3661 .......... .......... .......... .......... .......... .......... 3721 .......... .......... .......... .......... .....-.... .......... 3781 .......... .......... .......... ......|... ...------- -------... 3841 ...-..-... ..-....... .......... ..-....... ......-... ..--...... 3901 .......... .......... .......... .......... .......... .......... 3961 .......... .......... ...-...... .......... .......... .......... 4021 ......---. .......... .-........ .-........ .......... .......... 4081 .......... .......... ......-... .......... .........- .......... 4141 .-.-...... .......... .......... .......... .-........ .......... 4201 .......... .......... .......... .......... .......... .......... 4261 .......... .......... .......... .-........ ...-...... .......... 4321 .......... ......-... .........- .......... -......... .........- 4381 .....-.... .......... ........-- ....-..... .......... .......... 4441 .......... .......... .......... .......... .......... .......... 4501 .......... .......... ...--..... ........-- .......... .......... 4561 .......... .......... ........-. .......... ........-. ...-...... 4621 -.....-... .......... .......... .......... .......... .......... 4681 .......... .......... .......... .......... .......... .......... 4741 .......... .......... .......... .......... .......... .......... 4801 .......... .......... .......... .......... .......... .......... 4861 .......... .......... .......... .......... .......... .......... 4921 .......... .......... .......... .......... .......... .......... 4981 .......... .......... .......... .......... .......... .......... 5041 .......... .......... .......... .......... .......... .......... 5101 .......... .......... .......... .......... .......... .......... 5161 .......... .......... .......... .......... ........|| ||| // LOCUS mt.S.canic 5213 bp RNA RNA 17-SEP-1998 DEFINITION Mitochondrion Scyliorhinus canicula.; 12S rRNA; 16S rRNA; ATPase 6; ATPase 8; COI gene; COII gene; COIII gene; complete genome; control region; cytb gene; mitochondrial; NADH1 gene; NADH2 gene; NADH3 gene; NADH4 gene; NADH4L gene; NADH5 gene; NADH6 gene; origin of replication; tRNA-Ala; tRNA-Arg; tRNA-Asn; tRNA-Asp; tRNA-Cys; tRNA-Gln; tRNA-Glu; tRNA-Gly; tRNA-His; tRNA-Ile; tRNA-Leu(CUN); tRNA-Leu(UUR); tRNA-Lys; tRNA-Met; tRNA-Phe; tRNA-Pro; tRNA-Ser(AGY); tRNA-Ser(UCN); tRNA-Thr; tRNA-Trp; tRNA-Tyr; tRNA-Val. ACCESSION Y16067 KEYWORDS 12S rRNA; 16S rRNA; ATPase 6; ATPase 8; COI gene; COII gene; COIII gene; complete genome; control region; cytb gene; mitochondrial; NADH1 gene; NADH2 gene; NADH3 gene; NADH4 gene; NADH4L gene; NADH5 gene; NADH6 gene; origin of replication; tRNA-Ala; tRNA-Arg; tRNA-Asn; tRNA-Asp; tRNA-Cys; tRNA-Gln; tRNA-Glu; tRNA-Gly; tRNA-His; tRNA-Ile; tRNA-Leu(CUN); tRNA-Leu(UUR); tRNA-Lys; tRNA-Met; tRNA-Phe; tRNA-Pro; tRNA-Ser(AGY); tRNA-Ser(UCN); tRNA-Thr; tRNA-Trp; tRNA-Tyr; tRNA-Val. SOURCE Mitochondrion Scyliorhinus canicula. ORGANISM Mitochondrion Scyliorhinus canicula. REFERENCE 1 (bases 1 to 16697) AUTHORS Delarbre,C., Spruyt,N., Delmarre,C., Gallut,C., Barriel,V., Janvier,P., Laudet,V. and Gachelin,G. TITLE The complete nucleotide sequence of the mitochondrial DNA of the dogfish, scyliorhinus canicula JOURNAL Genetics 150 (1), 331-344 (1998) STANDARD No information REFERENCE 2 (bases 1 to 16697) AUTHORS Gachelin,G. TITLE Direct Submission JOURNAL Submitted (30-DEC-1997) G. Gachelin, Institut Pasteur, Dept. of Immunology, 25 rue du Docteur ROUX, 75015 Paris Cedex, FRANCE STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: Y16067 Related sequence Y09526. BASE COUNT 308 a 225 c 190 g 237 t 4253 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- -uguUAGGUU 661 (UGG-)U-CC U|GACCU-UA GUG-UUAAUU -G-CAAC-UA |AA-AU--UA -UAC-A-UGC 721 -AAGu----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------uuc a)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------|- gCCCCCCUGU GAGAA---UG C|CCU-Aa-- --gu-auu-- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- --(cuauua- -----)---- 1261 ---------- ---------- -aau--aa-- --uUAGGGGC |--------- GGGCAUCA-- 1321 -GGCACACAU -----(uuua c--------- ---------- ---------- ------)--- 1381 -AUGU|---G GCCCA--AGA C|GCCUU-GC --|------- (-uca--)-- -------GC| 1441 CACA------ ---------- ---------- -|--CCC--( UAAG-)--GG uuuu---C-A 1501 GCA|GUA-AU AAACAUUGAU uaCAUAAGC( ---------- ----GUAA)G CUUGA-AUC| 1561 A|-GUUA-A- AG-UCG---a ca-------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- GAGUU|-GGU 1921 -AAA-U---C UCGU-G(-CC AGCCACC-GC -GGU-UA)-U ACGAGU|--- -GAC-UCA-- 1981 CAUUA-ACAC U--------u ccCGGC|GUA AAGUGUGAuu -u-aag---- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 -----gauga ccuccaaaua acuaua--gu -----|uaug accuca-uca ----aGCU(G 2341 UUAUA)CGCA U-------uc guga-ac--g gaa------- -uaaucaaca --AC(-GAAA 2401 -)GU|g---- ----acucua --aauuacca gg---aau-- cuu-gaugUC ACGAC-AGUU 2461 G-GGC---CC CAAACUAGG( AUUAGAUAC) CCUA-CUAU| -GCCC-UAC- CAUAAA-CUU 2521 A--GACA-AU |AC|------ ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- --c(cuac)u a---U-AUUG 2701 U-C|--C|GC C-AGAG-UAC UACAAGC(-- -GCUA--)GC UUA--AAACC CAAAGGAC-U 2761 UG|GCGGUG- CCCCACA-CC CACCUAGA|G GAGCCUGU-U |CUAUA--AC CG(AUAAUCC 2821 C--------- ----)CGUUA A-ACCUCACC ACUUCUUGCC ---------- ---------- 2881 (-------au ua-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---CGU CUA-UA|UA- 3121 |CC|-GC--C |G------UC GU-CA|G-CU CAC-|CCC(G --UGA)GGG- -----(uua- 3181 aa-)------ a-aGUAAGCA AAA-aGAA-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ----uuaaac 3781 ---------U CCuaAA-CGU C-AGGUCGAG G|UGUA|GCG AAU------- ---------G 3841 A-A-GU-GG- AA-AGA--AA -UGGGCUACA UU--UU-U-- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--u ua---)---- ---------- ---------- ccA-AAaaa- 4021 ---------- -----UACGG --ACAGU-AA A-C(------ ---------- ---------- 4081 ---------- ---------- UGAAA----) A-AU-U--AC -C--CAAAG- -GUGGAUUUA 4141 G-C--AGUAA G-AGAAGG(- UCAGA-GU-- --)ACUUCUC U-GAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -ACU--GGCU 4261 CUGGGG-CG- CGCACACA-C -CGCCCGUCA C-UCU--CCU C--------- ---------- 4321 ---------- ---------- ---------- ---------- ---------< -aauaaaua- 4381 cac-u--uau (u-uuu)aua aaaau---uu u-accaaaac a--------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- ---------a GAGG-AGG-C AAGUCGUAAC AUGGUAAG-U GUA-CU(GGA 4621 -A)AGU-GC- ACUUGGAACC AA-------| ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- --------|| ||| // LOCUS mt.M.manaz 5213 bp RNA RNA 12-SEP-1998 DEFINITION Mitochondrion Mustelus manazo.; . ACCESSION AB0159 2 KEYWORDS . SOURCE Mitochondrion Mustelus manazo. ORGANISM Mitochondrion Mustelus manazo. REFERENCE 1 (sites) AUTHORS Cao,Y., Waddell,P.J., Okada,N. and Hasegawa,M. TITLE The complete mitochondrial DNA sequence of the shark (Mustelus manazo): Evaluating rooting contradictions to living bony vertebrates JOURNAL Mol. Biol. Evol. (1998) In press STANDARD No information REFERENCE 2 (bases 1 to 16707) AUTHORS Cao,Y. TITLE Direct Submission JOURNAL Submitted (07-JUL-1998) to the DDBJ/EMBL/GenBank databases. Ying Cao, The Institute of Statistical Mathematics; 4-6-7 Minami-Azabu, Minato-ku, Tokyo 106-8569, Japan (E-mail:cao@ism.ac.jp, Tel: +81-3-5421-8748, Fax: +81-3-5421-8796) STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: AB015962 BASE COUNT 316 a 215 c 184 g 241 t 4257 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- -uacaAGGUU 661 (UGG-)U-CC U|GGCCU-UA GUG-UUAAUU -G-UAAC-UA |GA-AU--UA -UAC-A-UGC 721 -AAGu----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------uuc a)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------|- gCCCUCCUGU GAGAA---UG C|CCU-Aa-- --uu-aau-- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- --(cuauua- -----)---- 1261 ---------- ---------- -aau--aa-- --uUAGGAGC |--------- AGGUAUCA-- 1321 -GGCACA--- -----(cgca cgu------- ---------- ---------- ------)--- 1381 ----A|---- GCCCA--AGA C|ACCUU-GC --|------- (-uaa--)-- -------GC| 1441 CACA------ ---------- ---------- -|-CCCC--( CAAG-)--GG auuu---C-A 1501 GCA|GUA-AU AAACAUUAAU u-CAUGAGC( ---------- ----GAAA)G CUUGA-AUU| 1561 A|-GUUA-A- AG-UCG---a ca-------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- GAGUU|-GGU 1921 -UAA-U---C UCGU-G(-CC AGCCACC-GC -GGU-UA)-U ACGAGU|--- -AAC-UCA-- 1981 UAUUA-ACAC A--------c ccCGGC|GUA AAGAGUGGuu -u-aag---- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 -----aauga ccuuuuaaua acuaaa--gu -----|uuag accuca-uaa ----aGCU(G 2341 UUAUA)CGCA C-------uc auga-gu--g gaa------- -uaaucaaca --AC(-GAAA 2401 -)GU|g---- ----acuuua --cauauuaa gg---agc-- cuu-gaugCC ACGAU-AGUU 2461 G-AGA---CC CAAACUAGG( AUUAGAUAC) CCUA-CUAU| -GCCC-AAC- CAUAAA-CUU 2521 A--GACA-AU |AC|------ ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- --u(ucac)c a---U-AUUG 2701 U-U|--C|GC C-AGAG-UAC UACAAGC(-- -GCUA--)GC UUA--AAACC CAAAGGAC-U 2761 UG|GCGGUA- UCCCACA-CC CACCUAGA|G GAGCCUGU-U |CUAUG--AC CG(AUAAUCC 2821 C--------- ----)CGUUC A-ACCUCACC ACUUCUUGCC ---------- ---------- 2881 (-------au ua-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---CGU CUA-UA|UA- 3121 |CC|-GC--C |G------UC GU-CA|G-CU CAC-|CCU(G --UGA)AGG- -----(guc- 3181 aa-)------ a-aGUAAGCA AAA-aGAA-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ----uuaaac 3781 ---------U CCaaAA-CGU C-AGGUCGAG G|UGUA|GCA AAU------- ---------G 3841 A-A-GU-GG- GA-AGA--AA -UGGGCUACA UU--UU-U-- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--u -a---)---- ---------- ---------- ccA-AAaaca 4021 ---------- -----UACGA --AUGGU-AA A-U(------ ---------- ---------- 4081 ---------- ---------- UGAAA----) A-UA-U--AC -C--UAAAG- -GUGGAUUUA 4141 G-C--AGUAA G-AGAAGA(- UCAGA-GU-- --)ACUUCCC U-GAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -AUU--GGCU 4261 CUGGGA-UG- CGCACACA-C -CGCCCGUCA C-UCU--CCU C--------- ---------- 4321 ---------- ---------- ---------- ---------- ---------< -aa-aaacc- 4381 uac-u--uau (u-uuu)uua uaaauacauu u--cuuuaac a--------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- ---------a GAGG-AGG-C AAGUCGUAAC AUGGUAAG-U GUA-CU(GGA 4621 -A)AGU-GC- ACUUGGAAUC AA-------| ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- --------|| ||| // LOCUS (12)-bony 5213 bp RNA RNA 25-JAN-1994 DEFINITION bony vertebrates. ACCESSION No information KEYWORDS No information. SOURCE bony vertebrates. ORGANISM bony vertebrates. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: DIVIDER BASE COUNT 0 a 0 c 0 g 0 t 5213 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ----|..... .......... .......... 541 .......... .......... .......... .......... .......... .......... 601 .......... .......... .......... .......... .......... .......... 661 .......-.. .......... .......... ..-....... |......... ....-..... 721 .......-.. .....|.... ........-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- ------.... .......... 841 .......... .......... .......... .......... .......... .......... 901 .......... .......... .......... .......... .......... .......... 961 .....-..|. .......... .......... .|........ -......... .....-.... 1021 .......... ....---... ..-..---.. .......... .......... .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .......... .......... .......... .......... .......... 1201 .......... .......... .......... .......... .......... .......... 1261 .......... .......... .........- .......... ..----.... ........-- 1321 .......... .......... .......... .......... .......... .......... 1381 ......---. .......... .......-.. .......... .......... .......... 1441 .......... ........-. ..-....... .......... .......... ........-. 1501 ...|...-.. .......... .......... .......... .......... .....-...| 1561 .......... .......... .......... .......... .--....... .......... 1621 .......... .......... .......... .......... .......... .......... 1681 .......... .......... .......... .......... .......... .......... 1741 .......... .......... .......... .......... .......... .......... 1801 .......... .......... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .......... .......... 1921 .......... .......-.. .......... -.......-. .......... .......... 1981 .....-.... ...--..... .......... .......... -......... .......... 2041 .......... .....----. .......... .......... .....----- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- --------.. .......... .......... .......... 2221 .......... .......... .......... .......... ........|. .......-.. 2281 .......... -......... ......--.. .-........ .......... ---....... 2341 .......... ...-...... ....-..... .......... .......... .......... 2401 ....|..... .......... .......... .......... .......... .....-.... 2461 .....--... .......... .......... .......... .......... .......... 2521 .--....-.. |......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... .......... 2701 .-..-..... .......... .......... .......... .......... .......... 2761 ..|....... .......... ........|. ........-. |......... .......... 2821 .--------- ----...... .-........ .......... .......... .......... 2881 .....---.. ..-....... .......... .......... .......... .......... 2941 .......... .......... .......... .......... .......... .......... 3001 .......... .......... .......... .......... .......... .......... 3061 .......... .......... .......... .......... .--....... ...-.....- 3121 .......--. |......... .......-.. .......... .-........ .........- 3181 .......... .-........ .......... .......... .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .......... .......... .......... 3361 .......... .......... .......... .......... .....--... .......... 3421 .......... .......... .......... .......... .......... .......... 3481 .......... ........-- --........ .......... .......... .......... 3541 .......... .......... .......... .......... .......... .......... 3601 .......... .......... .......... .......... .......... .......... 3661 .......... .......... .......... .......... .......... .......... 3721 .......... .......... .......... .......... .....-.... .......... 3781 .......... .......... .......... ......|... ...------- -------... 3841 ...-..-... ..-....... .......... ..-....... ......-... ..--...... 3901 .......... .......... .......... .......... .......... .......... 3961 .......... .......... ...-...... .......... .......... .......... 4021 ......---. .......... .-........ .-........ .......... .......... 4081 .......... .......... ......-... .......... .........- .......... 4141 .-.-...... .......... .......... .......... .-........ .......... 4201 .......... .......... .......... .......... .......... .......... 4261 .......... .......... .......... .-........ ...-...... .......... 4321 .......... ......-... .........- .......... -......... .........- 4381 .....-.... .......... ........-- ....-..... .......... .......... 4441 .......... .......... .......... .......... .......... .......... 4501 .......... .......... ...--..... ........-- .......... .......... 4561 .......... .......... ........-. .......... ........-. ...-...... 4621 -.....-... .......... .......... .......... .......... .......... 4681 .......... .......... .......... .......... .......... .......... 4741 .......... .......... .......... .......... .......... .......... 4801 .......... .......... .......... .......... .......... .......... 4861 .......... .......... .......... .......... .......... .......... 4921 .......... .......... .......... .......... .......... .......... 4981 .......... .......... .......... .......... .......... .......... 5041 .......... .......... .......... .......... .......... .......... 5101 .......... .......... .......... .......... .......... .......... 5161 .......... .......... .......... .......... ........|| ||| // LOCUS (13)-Actin 5213 bp RNA RNA 25-JAN-1994 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: DIVIDER BASE COUNT 0 a 0 c 0 g 0 t 5213 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ----|..... .......... .......... 541 .......... .......... .......... .......... .......... .......... 601 .......... .......... .......... .......... .......... .......... 661 .......-.. .......... .......... ..-....... |......... ....-..... 721 .......-.. .....|.... ........-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- ------.... .......... 841 .......... .......... .......... .......... .......... .......... 901 .......... .......... .......... .......... .......... .......... 961 .....-..|. .......... .......... .|........ -......... .....-.... 1021 .......... ....---... ..-..---.. .......... .......... .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .......... .......... .......... .......... .......... 1201 .......... .......... .......... .......... .......... .......... 1261 .......... .......... .........- .......... ..----.... ........-- 1321 .......... .......... .......... .......... .......... .......... 1381 ......---. .......... .......-.. .......... .......... .......... 1441 .......... ........-. ..-....... .......... .......... ........-. 1501 ...|...-.. .......... .......... .......... .......... .....-...| 1561 .......... .......... .......... .......... .--....... .......... 1621 .......... .......... .......... .......... .......... .......... 1681 .......... .......... .......... .......... .......... .......... 1741 .......... .......... .......... .......... .......... .......... 1801 .......... .......... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .......... .......... 1921 .......... .......-.. .......... -.......-. .......... .......... 1981 .....-.... ...--..... .......... .......... -......... .......... 2041 .......... .....----. .......... .......... .....----- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- --------.. .......... .......... .......... 2221 .......... .......... .......... .......... ........|. .......-.. 2281 .......... -......... ......--.. .-........ .......... ---....... 2341 .......... ...-...... ....-..... .......... .......... .......... 2401 ....|..... .......... .......... .......... .......... .....-.... 2461 .....--... .......... .......... .......... .......... .......... 2521 .--....-.. |......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... .......... 2701 .-..-..... .......... .......... .......... .......... .......... 2761 ..|....... .......... ........|. ........-. |......... .......... 2821 .--------- ----...... .-........ .......... .......... .......... 2881 .....---.. ..-....... .......... .......... .......... .......... 2941 .......... .......... .......... .......... .......... .......... 3001 .......... .......... .......... .......... .......... .......... 3061 .......... .......... .......... .......... .--....... ...-.....- 3121 .......--. |......... .......-.. .......... .-........ .........- 3181 .......... .-........ .......... .......... .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .......... .......... .......... 3361 .......... .......... .......... .......... .....--... .......... 3421 .......... .......... .......... .......... .......... .......... 3481 .......... ........-- --........ .......... .......... .......... 3541 .......... .......... .......... .......... .......... .......... 3601 .......... .......... .......... .......... .......... .......... 3661 .......... .......... .......... .......... .......... .......... 3721 .......... .......... .......... .......... .....-.... .......... 3781 .......... .......... .......... ......|... ...------- -------... 3841 ...-..-... ..-....... .......... ..-....... ......-... ..--...... 3901 .......... .......... .......... .......... .......... .......... 3961 .......... .......... ...-...... .......... .......... .......... 4021 ......---. .......... .-........ .-........ .......... .......... 4081 .......... .......... ......-... .......... .........- .......... 4141 .-.-...... .......... .......... .......... .-........ .......... 4201 .......... .......... .......... .......... .......... .......... 4261 .......... .......... .......... .-........ ...-...... .......... 4321 .......... ......-... .........- .......... -......... .........- 4381 .....-.... .......... ........-- ....-..... .......... .......... 4441 .......... .......... .......... .......... .......... .......... 4501 .......... .......... ...--..... ........-- .......... .......... 4561 .......... .......... ........-. .......... ........-. ...-...... 4621 -.....-... .......... .......... .......... .......... .......... 4681 .......... .......... .......... .......... .......... .......... 4741 .......... .......... .......... .......... .......... .......... 4801 .......... .......... .......... .......... .......... .......... 4861 .......... .......... .......... .......... .......... .......... 4921 .......... .......... .......... .......... .......... .......... 4981 .......... .......... .......... .......... .......... .......... 5041 .......... .......... .......... .......... .......... .......... 5101 .......... .......... .......... .......... .......... .......... 5161 .......... .......... .......... .......... ........|| ||| // LOCUS (14)-CHOND 5213 bp RNA RNA 25-JAN-1994 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: DIVIDER BASE COUNT 0 a 0 c 0 g 0 t 5213 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ----|..... .......... .......... 541 .......... .......... .......... .......... .......... .......... 601 .......... .......... .......... .......... .......... .......... 661 .......-.. .......... .......... ..-....... |......... ....-..... 721 .......-.. .....|.... ........-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- ------.... .......... 841 .......... .......... .......... .......... .......... .......... 901 .......... .......... .......... .......... .......... .......... 961 .....-..|. .......... .......... .|........ -......... .....-.... 1021 .......... ....---... ..-..---.. .......... .......... .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .......... .......... .......... .......... .......... 1201 .......... .......... .......... .......... .......... .......... 1261 .......... .......... .........- .......... ..----.... ........-- 1321 .......... .......... .......... .......... .......... .......... 1381 ......---. .......... .......-.. .......... .......... .......... 1441 .......... ........-. ..-....... .......... .......... ........-. 1501 ...|...-.. .......... .......... .......... .......... .....-...| 1561 .......... .......... .......... .......... .--....... .......... 1621 .......... .......... .......... .......... .......... .......... 1681 .......... .......... .......... .......... .......... .......... 1741 .......... .......... .......... .......... .......... .......... 1801 .......... .......... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .......... .......... 1921 .......... .......-.. .......... -.......-. .......... .......... 1981 .....-.... ...--..... .......... .......... -......... .......... 2041 .......... .....----. .......... .......... .....----- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- --------.. .......... .......... .......... 2221 .......... .......... .......... .......... ........|. .......-.. 2281 .......... -......... ......--.. .-........ .......... ---....... 2341 .......... ...-...... ....-..... .......... .......... .......... 2401 ....|..... .......... .......... .......... .......... .....-.... 2461 .....--... .......... .......... .......... .......... .......... 2521 .--....-.. |......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... .......... 2701 .-..-..... .......... .......... .......... .......... .......... 2761 ..|....... .......... ........|. ........-. |......... .......... 2821 .--------- ----...... .-........ .......... .......... .......... 2881 .....---.. ..-....... .......... .......... .......... .......... 2941 .......... .......... .......... .......... .......... .......... 3001 .......... .......... .......... .......... .......... .......... 3061 .......... .......... .......... .......... .--....... ...-.....- 3121 .......--. |......... .......-.. .......... .-........ .........- 3181 .......... .-........ .......... .......... .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .......... .......... .......... 3361 .......... .......... .......... .......... .....--... .......... 3421 .......... .......... .......... .......... .......... .......... 3481 .......... ........-- --........ .......... .......... .......... 3541 .......... .......... .......... .......... .......... .......... 3601 .......... .......... .......... .......... .......... .......... 3661 .......... .......... .......... .......... .......... .......... 3721 .......... .......... .......... .......... .....-.... .......... 3781 .......... .......... .......... ......|... ...------- -------... 3841 ...-..-... ..-....... .......... ..-....... ......-... ..--...... 3901 .......... .......... .......... .......... .......... .......... 3961 .......... .......... ...-...... .......... .......... .......... 4021 ......---. .......... .-........ .-........ .......... .......... 4081 .......... .......... ......-... .......... .........- .......... 4141 .-.-...... .......... .......... .......... .-........ .......... 4201 .......... .......... .......... .......... .......... .......... 4261 .......... .......... .......... .-........ ...-...... .......... 4321 .......... ......-... .........- .......... -......... .........- 4381 .....-.... .......... ........-- ....-..... .......... .......... 4441 .......... .......... .......... .......... .......... .......... 4501 .......... .......... ...--..... ........-- .......... .......... 4561 .......... .......... ........-. .......... ........-. ...-...... 4621 -.....-... .......... .......... .......... .......... .......... 4681 .......... .......... .......... .......... .......... .......... 4741 .......... .......... .......... .......... .......... .......... 4801 .......... .......... .......... .......... .......... .......... 4861 .......... .......... .......... .......... .......... .......... 4921 .......... .......... .......... .......... .......... .......... 4981 .......... .......... .......... .......... .......... .......... 5041 .......... .......... .......... .......... .......... .......... 5101 .......... .......... .......... .......... .......... .......... 5161 .......... .......... .......... .......... ........|| ||| // LOCUS mt.P.ornat 5213 bp RNA RNA 30-DEC-1997 DEFINITION Mitochondrion Polypterus ornatipinnis.; . ACCESSION U62532 KEYWORDS . SOURCE Mitochondrion Polypterus ornatipinnis. ORGANISM Mitochondrion Polypterus ornatipinnis. REFERENCE 1 (bases 1 to 16624) AUTHORS Noack,K., Zardoya,R. and Meyer,A. TITLE The complete mitochondrial DNA sequence of the bichir (Polypterus ornatipinnis), a basal ray-finned fish: ancient establishment of the consensus vertebrate gene order JOURNAL Genetics 144 (3), 1165-1180 (1996) STANDARD No information REFERENCE 2 (bases 1 to 16624) AUTHORS Noack,K., Zardoya,R. and Meyer,A. TITLE Direct Submission JOURNAL Submitted (28-JUN-1996) Ecology & Evolution, State University of New York at Stony Brook, 661 Life Sciences, Stony Brook, NY 11794-5245, USA STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: U62532 BASE COUNT 295 a 228 c 203 g 224 t 4263 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- ---aaAGAUU 661 (UGG-)U-CC U|AGUCU-UA CUA-UCAUUU cU-CGAC-UA |AA-CU--UA -UAC-A-UGC 721 -AAGu----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------auc c)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------|- gCGCUCCGGU GAAAA---UG C|CCU-Caau --cu-uc--- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- --(-cuagua -----)---- 1261 ---------- ---------- --ga--gga- --uAAGGAGC |--------- UGGCAUCA-- 1321 -GGCUCGU-- -----(gucc ---------- ---------- ---------- ------)--- 1381 ---AC|--gG CCCCA--AAA C|GCCUU-GC --|------- (-uuu--)-- -------GC| 1441 CACA------ ---------- ---------- -|-CCCC--( CACG-)--GG Auuu---C-A 1501 GCA|GUA-GU AAACAUUAGG C-AAUCAGC( ---------- ----GAAA)G CUAGA-CCU| 1561 A|-GUUA-U- AG-UUA---a uua------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- GAGCC|-GGU 1921 -AAA-A---C UCGU-G(-CC AGCCACC-GC -GGU-UA)-U ACGAGG|--- -GGC-UCC-- 1981 AAAUG-AUGG U-------ua uaCGGC|GUA UGGCGUGGUU -A-aca---- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 ------a-uu -acaauaaaa acugag--aa -----|CAAA AUACCU-UUA ----AGCU(G 2341 UCAUA)CGCU AA------u- aagu-ccAUG AAA------- ----aucaac -AAC(-GAAA 2401 -)GU|U---- ----aucuca u---uaua-- ---------- ugu-gaacCC ACGAA-AACC 2461 A-AGG---CA CAAACUGGG( AUUAGAUAC) CCCA-CUAU| -GCUU-GGU- CUUAAA-CUA 2521 A--GGCG-GC |AC|------ ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- -uu(auac)- u--AA-GCCG 2701 C-U|--C|GC C-AGGU-UAC UACGAGC(-- -GCAA--)GC UUA--AAACC CAAAGGAC-U 2761 UG|GCGGUG- CUUCAGA-AC CACCUAGA|G GAGCCUGU-U |CUGUA--AU CG(AUAAUCC 2821 U--------- ----)CGUUC A-ACCUCACC GCAUCUUGC- ---------- ---------- 2881 (-------au uc-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGC CUA-UA|UA- 3121 |CC|-GC--C |G------UC GC-CA|G-UC UAC-|CUU(U --UGA)GAG- -----(acc- 3181 au-)------ A-AGUAGGCC CAA-UAAG-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ----uaaaa- 3781 ---------C UUAACA-CGU C-AGGUCAAG G|UGUA|GCU UAU------- ---------G 3841 A-U-GC-GG- GA-AGA--AA -UGGGCUACA UU--UUCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--g au---)---- ---------- ---------- UAG-AAua-- 4021 ---------- -----CACGA --AAGAC-AC U-A(------ ---------- ---------- 4081 ---------- ---------- UGAAAC---) C-UG-U--GU -C--UGAAG- -GAGGAUUUA 4141 G-C--AGUAA A-UGGGGA(- guaga-gu-- --)GCCC-AC U-GAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -gcuu-GGCG 4261 CUGAAG-CG- CGCACACA-C -CGCCCGUCA C-UCU--CCU CC-------- ---------- 4321 ---------- ---------- ---------- ---------- ---------< -aaacauuu- 4381 uauaa-uuuu uaauaaaaca cuuccgacaa ua-------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- ---------A GAGG-AGG-C AAGUCGUAAC AUGGUAAG-U GUA-CC(GGA 4621 -A)GGU-GC- ACUUGGAAUA ACC------| ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- --------|| ||| // LOCUS (14)-Neopt 5213 bp RNA RNA 25-JAN-1994 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: DIVIDER BASE COUNT 0 a 0 c 0 g 0 t 5213 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ----|..... .......... .......... 541 .......... .......... .......... .......... .......... .......... 601 .......... .......... .......... .......... .......... .......... 661 .......-.. .......... .......... ..-....... |......... ....-..... 721 .......-.. .....|.... ........-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- ------.... .......... 841 .......... .......... .......... .......... .......... .......... 901 .......... .......... .......... .......... .......... .......... 961 .....-..|. .......... .......... .|........ -......... .....-.... 1021 .......... ....---... ..-..---.. .......... .......... .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .......... .......... .......... .......... .......... 1201 .......... .......... .......... .......... .......... .......... 1261 .......... .......... .........- .......... ..----.... ........-- 1321 .......... .......... .......... .......... .......... .......... 1381 ......---. .......... .......-.. .......... .......... .......... 1441 .......... ........-. ..-....... .......... .......... ........-. 1501 ...|...-.. .......... .......... .......... .......... .....-...| 1561 .......... .......... .......... .......... .--....... .......... 1621 .......... .......... .......... .......... .......... .......... 1681 .......... .......... .......... .......... .......... .......... 1741 .......... .......... .......... .......... .......... .......... 1801 .......... .......... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .......... .......... 1921 .......... .......-.. .......... -.......-. .......... .......... 1981 .....-.... ...--..... .......... .......... -......... .......... 2041 .......... .....----. .......... .......... .....----- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- --------.. .......... .......... .......... 2221 .......... .......... .......... .......... ........|. .......-.. 2281 .......... -......... ......--.. .-........ .......... ---....... 2341 .......... ...-...... ....-..... .......... .......... .......... 2401 ....|..... .......... .......... .......... .......... .....-.... 2461 .....--... .......... .......... .......... .......... .......... 2521 .--....-.. |......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... .......... 2701 .-..-..... .......... .......... .......... .......... .......... 2761 ..|....... .......... ........|. ........-. |......... .......... 2821 .--------- ----...... .-........ .......... .......... .......... 2881 .....---.. ..-....... .......... .......... .......... .......... 2941 .......... .......... .......... .......... .......... .......... 3001 .......... .......... .......... .......... .......... .......... 3061 .......... .......... .......... .......... .--....... ...-.....- 3121 .......--. |......... .......-.. .......... .-........ .........- 3181 .......... .-........ .......... .......... .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .......... .......... .......... 3361 .......... .......... .......... .......... .....--... .......... 3421 .......... .......... .......... .......... .......... .......... 3481 .......... ........-- --........ .......... .......... .......... 3541 .......... .......... .......... .......... .......... .......... 3601 .......... .......... .......... .......... .......... .......... 3661 .......... .......... .......... .......... .......... .......... 3721 .......... .......... .......... .......... .....-.... .......... 3781 .......... .......... .......... ......|... ...------- -------... 3841 ...-..-... ..-....... .......... ..-....... ......-... ..--...... 3901 .......... .......... .......... .......... .......... .......... 3961 .......... .......... ...-...... .......... .......... .......... 4021 ......---. .......... .-........ .-........ .......... .......... 4081 .......... .......... ......-... .......... .........- .......... 4141 .-.-...... .......... .......... .......... .-........ .......... 4201 .......... .......... .......... .......... .......... .......... 4261 .......... .......... .......... .-........ ...-...... .......... 4321 .......... ......-... .........- .......... -......... .........- 4381 .....-.... .......... ........-- ....-..... .......... .......... 4441 .......... .......... .......... .......... .......... .......... 4501 .......... .......... ...--..... ........-- .......... .......... 4561 .......... .......... ........-. .......... ........-. ...-...... 4621 -.....-... .......... .......... .......... .......... .......... 4681 .......... .......... .......... .......... .......... .......... 4741 .......... .......... .......... .......... .......... .......... 4801 .......... .......... .......... .......... .......... .......... 4861 .......... .......... .......... .......... .......... .......... 4921 .......... .......... .......... .......... .......... .......... 4981 .......... .......... .......... .......... .......... .......... 5041 .......... .......... .......... .......... .......... .......... 5101 .......... .......... .......... .......... .......... .......... 5161 .......... .......... .......... .......... ........|| ||| // LOCUS (15)-TELEO 5213 bp RNA RNA 25-JAN-1994 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: DIVDER BASE COUNT 0 a 0 c 0 g 0 t 5213 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ----|..... .......... .......... 541 .......... .......... .......... .......... .......... .......... 601 .......... .......... .......... .......... .......... .......... 661 .......-.. .......... .......... ..-....... |......... ....-..... 721 .......-.. .....|.... ........-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- ------.... .......... 841 .......... .......... .......... .......... .......... .......... 901 .......... .......... .......... .......... .......... .......... 961 .....-..|. .......... .......... .|........ -......... .....-.... 1021 .......... ....---... ..-..---.. .......... .......... .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .......... .......... .......... .......... .......... 1201 .......... .......... .......... .......... .......... .......... 1261 .......... .......... .........- .......... ..----.... ........-- 1321 .......... .......... .......... .......... .......... .......... 1381 ......---. .......... .......-.. .......... .......... .......... 1441 .......... ........-. ..-....... .......... .......... ........-. 1501 ...|...-.. .......... .......... .......... .......... .....-...| 1561 .......... .......... .......... .......... .--....... .......... 1621 .......... .......... .......... .......... .......... .......... 1681 .......... .......... .......... .......... .......... .......... 1741 .......... .......... .......... .......... .......... .......... 1801 .......... .......... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .......... .......... 1921 .......... .......-.. .......... -.......-. .......... .......... 1981 .....-.... ...--..... .......... .......... -......... .......... 2041 .......... .....----. .......... .......... .....----- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- --------.. .......... .......... .......... 2221 .......... .......... .......... .......... ........|. .......-.. 2281 .......... -......... ......--.. .-........ .......... ---....... 2341 .......... ...-...... ....-..... .......... .......... .......... 2401 ....|..... .......... .......... .......... .......... .....-.... 2461 .....--... .......... .......... .......... .......... .......... 2521 .--....-.. |......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... .......... 2701 .-..-..... .......... .......... .......... .......... .......... 2761 ..|....... .......... ........|. ........-. |......... .......... 2821 .--------- ----...... .-........ .......... .......... .......... 2881 .....---.. ..-....... .......... .......... .......... .......... 2941 .......... .......... .......... .......... .......... .......... 3001 .......... .......... .......... .......... .......... .......... 3061 .......... .......... .......... .......... .--....... ...-.....- 3121 .......--. |......... .......-.. .......... .-........ .........- 3181 .......... .-........ .......... .......... .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .......... .......... .......... 3361 .......... .......... .......... .......... .....--... .......... 3421 .......... .......... .......... .......... .......... .......... 3481 .......... ........-- --........ .......... .......... .......... 3541 .......... .......... .......... .......... .......... .......... 3601 .......... .......... .......... .......... .......... .......... 3661 .......... .......... .......... .......... .......... .......... 3721 .......... .......... .......... .......... .....-.... .......... 3781 .......... .......... .......... ......|... ...------- -------... 3841 ...-..-... ..-....... .......... ..-....... ......-... ..--...... 3901 .......... .......... .......... .......... .......... .......... 3961 .......... .......... ...-...... .......... .......... .......... 4021 ......---. .......... .-........ .-........ .......... .......... 4081 .......... .......... ......-... .......... .........- .......... 4141 .-.-...... .......... .......... .......... .-........ .......... 4201 .......... .......... .......... .......... .......... .......... 4261 .......... .......... .......... .-........ ...-...... .......... 4321 .......... ......-... .........- .......... -......... .........- 4381 .....-.... .......... ........-- ....-..... .......... .......... 4441 .......... .......... .......... .......... .......... .......... 4501 .......... .......... ...--..... ........-- .......... .......... 4561 .......... .......... ........-. .......... ........-. ...-...... 4621 -.....-... .......... .......... .......... .......... .......... 4681 .......... .......... .......... .......... .......... .......... 4741 .......... .......... .......... .......... .......... .......... 4801 .......... .......... .......... .......... .......... .......... 4861 .......... .......... .......... .......... .......... .......... 4921 .......... .......... .......... .......... .......... .......... 4981 .......... .......... .......... .......... .......... .......... 5041 .......... .......... .......... .......... .......... .......... 5101 .......... .......... .......... .......... .......... .......... 5161 .......... .......... .......... .......... ........|| ||| // LOCUS (16)-EUTEL 5213 bp RNA RNA 25-JAN-1994 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: DIVDER BASE COUNT 0 a 0 c 0 g 0 t 5213 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ----|..... .......... .......... 541 .......... .......... .......... .......... .......... .......... 601 .......... .......... .......... .......... .......... .......... 661 .......-.. .......... .......... ..-....... |......... ....-..... 721 .......-.. .....|.... ........-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- ------.... .......... 841 .......... .......... .......... .......... .......... .......... 901 .......... .......... .......... .......... .......... .......... 961 .....-..|. .......... .......... .|........ -......... .....-.... 1021 .......... ....---... ..-..---.. .......... .......... .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .......... .......... .......... .......... .......... 1201 .......... .......... .......... .......... .......... .......... 1261 .......... .......... .........- .......... ..----.... ........-- 1321 .......... .......... .......... .......... .......... .......... 1381 ......---. .......... .......-.. .......... .......... .......... 1441 .......... ........-. ..-....... .......... .......... ........-. 1501 ...|...-.. .......... .......... .......... .......... .....-...| 1561 .......... .......... .......... .......... .--....... .......... 1621 .......... .......... .......... .......... .......... .......... 1681 .......... .......... .......... .......... .......... .......... 1741 .......... .......... .......... .......... .......... .......... 1801 .......... .......... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .......... .......... 1921 .......... .......-.. .......... -.......-. .......... .......... 1981 .....-.... ...--..... .......... .......... -......... .......... 2041 .......... .....----. .......... .......... .....----- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- --------.. .......... .......... .......... 2221 .......... .......... .......... .......... ........|. .......-.. 2281 .......... -......... ......--.. .-........ .......... ---....... 2341 .......... ...-...... ....-..... .......... .......... .......... 2401 ....|..... .......... .......... .......... .......... .....-.... 2461 .....--... .......... .......... .......... .......... .......... 2521 .--....-.. |......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... .......... 2701 .-..-..... .......... .......... .......... .......... .......... 2761 ..|....... .......... ........|. ........-. |......... .......... 2821 .--------- ----...... .-........ .......... .......... .......... 2881 .....---.. ..-....... .......... .......... .......... .......... 2941 .......... .......... .......... .......... .......... .......... 3001 .......... .......... .......... .......... .......... .......... 3061 .......... .......... .......... .......... .--....... ...-.....- 3121 .......--. |......... .......-.. .......... .-........ .........- 3181 .......... .-........ .......... .......... .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .......... .......... .......... 3361 .......... .......... .......... .......... .....--... .......... 3421 .......... .......... .......... .......... .......... .......... 3481 .......... ........-- --........ .......... .......... .......... 3541 .......... .......... .......... .......... .......... .......... 3601 .......... .......... .......... .......... .......... .......... 3661 .......... .......... .......... .......... .......... .......... 3721 .......... .......... .......... .......... .....-.... .......... 3781 .......... .......... .......... ......|... ...------- -------... 3841 ...-..-... ..-....... .......... ..-....... ......-... ..--...... 3901 .......... .......... .......... .......... .......... .......... 3961 .......... .......... ...-...... .......... .......... .......... 4021 ......---. .......... .-........ .-........ .......... .......... 4081 .......... .......... ......-... .......... .........- .......... 4141 .-.-...... .......... .......... .......... .-........ .......... 4201 .......... .......... .......... .......... .......... .......... 4261 .......... .......... .......... .-........ ...-...... .......... 4321 .......... ......-... .........- .......... -......... .........- 4381 .....-.... .......... ........-- ....-..... .......... .......... 4441 .......... .......... .......... .......... .......... .......... 4501 .......... .......... ...--..... ........-- .......... .......... 4561 .......... .......... ........-. .......... ........-. ...-...... 4621 -.....-... .......... .......... .......... .......... .......... 4681 .......... .......... .......... .......... .......... .......... 4741 .......... .......... .......... .......... .......... .......... 4801 .......... .......... .......... .......... .......... .......... 4861 .......... .......... .......... .......... .......... .......... 4921 .......... .......... .......... .......... .......... .......... 4981 .......... .......... .......... .......... .......... .......... 5041 .......... .......... .......... .......... .......... .......... 5101 .......... .......... .......... .......... .......... .......... 5161 .......... .......... .......... .......... ........|| ||| // LOCUS (17)-ACANT 5213 bp RNA RNA 25-JAN-1994 DEFINITION ACANTHOPTERYGII. ACCESSION No information KEYWORDS No information. SOURCE ACANTHOPTERYGII. ORGANISM ACANTHOPTERYGII. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: DIVIDER BASE COUNT 0 a 0 c 0 g 0 t 5213 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ----|..... .......... .......... 541 .......... .......... .......... .......... .......... .......... 601 .......... .......... .......... .......... .......... .......... 661 .......-.. .......... .......... ..-....... |......... ....-..... 721 .......-.. .....|.... ........-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- ------.... .......... 841 .......... .......... .......... .......... .......... .......... 901 .......... .......... .......... .......... .......... .......... 961 .....-..|. .......... .......... .|........ -......... .....-.... 1021 .......... ....---... ..-..---.. .......... .......... .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .......... .......... .......... .......... .......... 1201 .......... .......... .......... .......... .......... .......... 1261 .......... .......... .........- .......... ..----.... ........-- 1321 .......... .......... .......... .......... .......... .......... 1381 ......---. .......... .......-.. .......... .......... .......... 1441 .......... ........-. ..-....... .......... .......... ........-. 1501 ...|...-.. .......... .......... .......... .......... .....-...| 1561 .......... .......... .......... .......... .--....... .......... 1621 .......... .......... .......... .......... .......... .......... 1681 .......... .......... .......... .......... .......... .......... 1741 .......... .......... .......... .......... .......... .......... 1801 .......... .......... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .......... .......... 1921 .......... .......-.. .......... -.......-. .......... .......... 1981 .....-.... ...--..... .......... .......... -......... .......... 2041 .......... .....----. .......... .......... .....----- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- --------.. .......... .......... .......... 2221 .......... .......... .......... .......... ........|. .......-.. 2281 .......... -......... ......--.. .-........ .......... ---....... 2341 .......... ...-...... ....-..... .......... .......... .......... 2401 ....|..... .......... .......... .......... .......... .....-.... 2461 .....--... .......... .......... .......... .......... .......... 2521 .--....-.. |......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... .......... 2701 .-..-..... .......... .......... .......... .......... .......... 2761 ..|....... .......... ........|. ........-. |......... .......... 2821 .--------- ----...... .-........ .......... .......... .......... 2881 .....---.. ..-....... .......... .......... .......... .......... 2941 .......... .......... .......... .......... .......... .......... 3001 .......... .......... .......... .......... .......... .......... 3061 .......... .......... .......... .......... .--....... ...-.....- 3121 .......--. |......... .......-.. .......... .-........ .........- 3181 .......... .-........ .......... .......... .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .......... .......... .......... 3361 .......... .......... .......... .......... .....--... .......... 3421 .......... .......... .......... .......... .......... .......... 3481 .......... ........-- --........ .......... .......... .......... 3541 .......... .......... .......... .......... .......... .......... 3601 .......... .......... .......... .......... .......... .......... 3661 .......... .......... .......... .......... .......... .......... 3721 .......... .......... .......... .......... .....-.... .......... 3781 .......... .......... .......... ......|... ...------- -------... 3841 ...-..-... ..-....... .......... ..-....... ......-... ..--...... 3901 .......... .......... .......... .......... .......... .......... 3961 .......... .......... ...-...... .......... .......... .......... 4021 ......---. .......... .-........ .-........ .......... .......... 4081 .......... .......... ......-... .......... .........- .......... 4141 .-.-...... .......... .......... .......... .-........ .......... 4201 .......... .......... .......... .......... .......... .......... 4261 .......... .......... .......... .-........ ...-...... .......... 4321 .......... ......-... .........- .......... -......... .........- 4381 .....-.... .......... ........-- ....-..... .......... .......... 4441 .......... .......... .......... .......... .......... .......... 4501 .......... .......... ...--..... ........-- .......... .......... 4561 .......... .......... ........-. .......... ........-. ...-...... 4621 -.....-... .......... .......... .......... .......... .......... 4681 .......... .......... .......... .......... .......... .......... 4741 .......... .......... .......... .......... .......... .......... 4801 .......... .......... .......... .......... .......... .......... 4861 .......... .......... .......... .......... .......... .......... 4921 .......... .......... .......... .......... .......... .......... 4981 .......... .......... .......... .......... .......... .......... 5041 .......... .......... .......... .......... .......... .......... 5101 .......... .......... .......... .......... .......... .......... 5161 .......... .......... .......... .......... ........|| ||| // LOCUS (18)-PERCO 5213 bp RNA RNA 25-JAN-1994 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: DIVIDER BASE COUNT 0 a 0 c 0 g 0 t 5213 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ----|..... .......... .......... 541 .......... .......... .......... .......... .......... .......... 601 .......... .......... .......... .......... .......... .......... 661 .......-.. .......... .......... ..-....... |......... ....-..... 721 .......-.. .....|.... ........-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- ------.... .......... 841 .......... .......... .......... .......... .......... .......... 901 .......... .......... .......... .......... .......... .......... 961 .....-..|. .......... .......... .|........ -......... .....-.... 1021 .......... ....---... ..-..---.. .......... .......... .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .......... .......... .......... .......... .......... 1201 .......... .......... .......... .......... .......... .......... 1261 .......... .......... .........- .......... ..----.... ........-- 1321 .......... .......... .......... .......... .......... .......... 1381 ......---. .......... .......-.. .......... .......... .......... 1441 .......... ........-. ..-....... .......... .......... ........-. 1501 ...|...-.. .......... .......... .......... .......... .....-...| 1561 .......... .......... .......... .......... .--....... .......... 1621 .......... .......... .......... .......... .......... .......... 1681 .......... .......... .......... .......... .......... .......... 1741 .......... .......... .......... .......... .......... .......... 1801 .......... .......... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .......... .......... 1921 .......... .......-.. .......... -.......-. .......... .......... 1981 .....-.... ...--..... .......... .......... -......... .......... 2041 .......... .....----. .......... .......... .....----- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- --------.. .......... .......... .......... 2221 .......... .......... .......... .......... ........|. .......-.. 2281 .......... -......... ......--.. .-........ .......... ---....... 2341 .......... ...-...... ....-..... .......... .......... .......... 2401 ....|..... .......... .......... .......... .......... .....-.... 2461 .....--... .......... .......... .......... .......... .......... 2521 .--....-.. |......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... .......... 2701 .-..-..... .......... .......... .......... .......... .......... 2761 ..|....... .......... ........|. ........-. |......... .......... 2821 .--------- ----...... .-........ .......... .......... .......... 2881 .....---.. ..-....... .......... .......... .......... .......... 2941 .......... .......... .......... .......... .......... .......... 3001 .......... .......... .......... .......... .......... .......... 3061 .......... .......... .......... .......... .--....... ...-.....- 3121 .......--. |......... .......-.. .......... .-........ .........- 3181 .......... .-........ .......... .......... .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .......... .......... .......... 3361 .......... .......... .......... .......... .....--... .......... 3421 .......... .......... .......... .......... .......... .......... 3481 .......... ........-- --........ .......... .......... .......... 3541 .......... .......... .......... .......... .......... .......... 3601 .......... .......... .......... .......... .......... .......... 3661 .......... .......... .......... .......... .......... .......... 3721 .......... .......... .......... .......... .....-.... .......... 3781 .......... .......... .......... ......|... ...------- -------... 3841 ...-..-... ..-....... .......... ..-....... ......-... ..--...... 3901 .......... .......... .......... .......... .......... .......... 3961 .......... .......... ...-...... .......... .......... .......... 4021 ......---. .......... .-........ .-........ .......... .......... 4081 .......... .......... ......-... .......... .........- .......... 4141 .-.-...... .......... .......... .......... .-........ .......... 4201 .......... .......... .......... .......... .......... .......... 4261 .......... .......... .......... .-........ ...-...... .......... 4321 .......... ......-... .........- .......... -......... .........- 4381 .....-.... .......... ........-- ....-..... .......... .......... 4441 .......... .......... .......... .......... .......... .......... 4501 .......... .......... ...--..... ........-- .......... .......... 4561 .......... .......... ........-. .......... ........-. ...-...... 4621 -.....-... .......... .......... .......... .......... .......... 4681 .......... .......... .......... .......... .......... .......... 4741 .......... .......... .......... .......... .......... .......... 4801 .......... .......... .......... .......... .......... .......... 4861 .......... .......... .......... .......... .......... .......... 4921 .......... .......... .......... .......... .......... .......... 4981 .......... .......... .......... .......... .......... .......... 5041 .......... .......... .......... .......... .......... .......... 5101 .......... .......... .......... .......... .......... .......... 5161 .......... .......... .......... .......... ........|| ||| // LOCUS mt.H.velif 5213 bp RNA RNA 10-AUG-1994 DEFINITION Mitochondrion Histiodraco velifer.; 12S ribosomal RNA. ACCESSION Z32710 KEYWORDS 12S ribosomal RNA. SOURCE Mitochondrion Histiodraco velifer. ORGANISM Mitochondrion Histiodraco velifer. REFERENCE 1 (bases 1 to 373) AUTHORS Battaglia,B. and Meyer,A. Bargelloni,L., Ritchie,P., Patarnello,T., Lambert,D., TITLE Mitochondrial and nuclear phylogenies of fishes from Antarctica (suborder Notothenioidei) and the evolution of antifreeze glycopeptides JOURNAL Unpublished STANDARD No information REFERENCE 2 (bases 1 to 373) AUTHORS Bargelloni,L. TITLE Direct Submission JOURNAL Submitted (25-APR-1994) to the EMBL/GenBank/DDBJ databases. Luca Bargelloni, Biology, University of Padova, Via Trieste 75, Padova, 35121, Italy STANDARD full automatic COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: Z32710 NCBI gi: 530394 BASE COUNT 103 a 99 c 89 g 82 t 4840 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --~~~~~~~~ 661 (~~~-)~-~~ ~|~~~~~-~~ ~~~-~~~~~~ -~-~~~~-~~ |~~~~~~~~~ ~~~~-~~~~~ 721 ~~~~~~~-~~ ~~~~~|~~~~ ~~~~~~~(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------~~~ ~)~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~-~~|~ ~~~~~~~~~~ ~~~~~---~~ ~|~~~~~~~~ -~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(------- -----)---- 1261 ---------- ---------- --~~~~~~~- ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~(~~~~ ~~~------- ---------- ---------- ------)--- 1381 ---~~|---~ ~~~~~--~~~ ~|~~~~~-~~ --|~~~~~~~ (-~~~--)~~ ~~~~~~~~~| 1441 ~~~~------ ---------- ---------- -|-~~~~--( ~~~~-)~~~~ ~~~~~~~~-~ 1501 ~~~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~( ---------- ---~~~~~)- ----~-~~~| 1561 ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~|-~~~ 1921 -~~~-~~~~~ ~~~~~~(-~~ ~~~~~~~~~~ ~~~~-~~)-~ ~~~~~~|--- -~~~~~~~-- 1981 ~~~~~-~~~~ ~~~-~~~~~~ ~~~~~~|~~~ ~~~~~~~~-- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 -~~~~~~~~~ -~~~~~~~~~ ~~~~~~--~~ -----|~~~~ ~~~~~~-~~~ ----~~~~(~ 2341 ~~~~~)~~~- ~~~------~ ~~~~~~~~~~ ~~~------- -----~~~~~ -~~~(-~~~~ 2401 -)~~|~---- ----~~~~~~ ~~~~~~~~~~ ~~---~~~-~ ~~~--~~~~~ ~~~~~-~~~~ 2461 ~-~~~---~~ ~~~~~~~~~( ~~~~~~~~~) ~~~~-~~~~| -~~~~-~GC- CGUAAA-CAU 2521 U--GAUA-GA |UU|------ ------(--- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---)------ ---------- --a(auac)a ac--C-CCUA 2701 U-C|--C|GC C-CGGG-AAC UACGAGC(-- -AC-ca-)GC UUA--AAACC CAAAGGAC-U 2761 UG|GCGGUG- CUUUAGA-UC CUACUAGA|G GAGCCUGU-U |CUAAA--AC CG(AUAACCC 2821 C--------- ----)CGUUC A-ACCUCACC UUUCCUUGUU ---------- ---------- 2881 (-------uu cc-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---CGC CUA-UA|UA- 3121 |CC|-GC--C |G------UC GU-CA|G-CC CAC-|CCU(A --UGA)AGG- -----(uuu- 3181 aaa)------ --AGUAGGCU CAA-UUGG-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ----cacag- 3781 ---------C CCAGAA-CGU C-AGGCCGAG G|UGUA|GCG UAU------- ---------G 3841 G-A-GA-GGG -A-AGA--AA -UGGGCUACA UU--CCCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--u cu---)---- ---------- ---------- UAG-GGCAC- 4021 ---------- ------ACGA --AUGGU-GU G-C(------ ---------- ---------- 4081 ---------- ---------- UGAAA--C-) G-CA-C--AU -Cu-UGAAG- -GAGGAUUUA 4141 G-C--AGUAA G-CAGGAA(- gua-gagc-- --)GUCCCGC U-gaa----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -AUU--GGCU 4261 C~~~~~-~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~-~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~- ~~~~~~~~~~ -~~~~~~~~< ~~~~~~~~~- 4381 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4501 ~~~~~~~~~~ ~~~~~~~~~~ ~~>~~~~~~~ ~~~~~~~~-- ~~~~~~~~~~ ~~~~~~~~~~ 4561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~-~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~-~~(~~~ 4621 -~)~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS mt.C.antar 5213 bp RNA RNA 10-AUG-1994 DEFINITION Mitochondrion Cryodraco antarcticus.; 12S ribosomal RNA. ACCESSION Z32705 KEYWORDS 12S ribosomal RNA. SOURCE Mitochondrion Cryodraco antarcticus. ORGANISM Mitochondrion Cryodraco antarcticus. REFERENCE 1 (bases 1 to 372) AUTHORS Bargelloni,L., Ritchie,P., Patarnello,T., Lambert,D., Battaglia,B. and Meyer,A. TITLE Antarctica (suborder Notothenioidei) and the evolution of antifreeze glycopeptides Mitochondrial and nuclear phylogenies of fishes from JOURNAL Unpublished STANDARD No information REFERENCE 2 (bases 1 to 372) AUTHORS Bargelloni,L. TITLE Direct Submission JOURNAL Submitted (25-APR-1994) to the EMBL/GenBank/DDBJ databases. Luca Bargelloni, Biology, University of Padova, Via Trieste 75, Padova, 35121, Italy STANDARD full automatic COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: Z32705 NCBI gi: 530365 BASE COUNT 105 a 96 c 89 g 82 t 4841 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --~~~~~~~~ 661 (~~~-)~-~~ ~|~~~~~-~~ ~~~-~~~~~~ -~-~~~~-~~ |~~~~~~~~~ ~~~~-~~~~~ 721 ~~~~~~~-~~ ~~~~~|~~~~ ~~~~~~~(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------~~~ ~)~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~-~~|~ ~~~~~~~~~~ ~~~~~---~~ ~|~~~~~~~~ -~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(------- -----)---- 1261 ---------- ---------- --~~~~~~~- ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~(~~~~ ~~~------- ---------- ---------- ------)--- 1381 ---~~|---~ ~~~~~--~~~ ~|~~~~~-~~ --|~~~~~~~ (-~~~--)~~ ~~~~~~~~~| 1441 ~~~~------ ---------- ---------- -|-~~~~--( ~~~~-)~~~~ ~~~~~~~~-~ 1501 ~~~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~( ---------- ---~~~~~)- ----~-~~~| 1561 ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~|-~~~ 1921 -~~~-~~~~~ ~~~~~~(-~~ ~~~~~~~~~~ ~~~~-~~)-~ ~~~~~~|--- -~~~~~~~-- 1981 ~~~~~-~~~~ ~~~-~~~~~~ ~~~~~~|~~~ ~~~~~~~~-- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 -~~~~~~~~~ -~~~~~~~~~ ~~~~~~--~~ -----|~~~~ ~~~~~~-~~~ ----~~~~(~ 2341 ~~~~~)~~~- ~~~------~ ~~~~~~~~~~ ~~~------- -----~~~~~ -~~~(-~~~~ 2401 -)~~|~---- ----~~~~~~ ~~~~~~~~~~ ~~---~~~-~ ~~~--~~~~~ ~~~~~-~~~~ 2461 ~-~~~---~~ ~~~~~~~~~( ~~~~~~~~~) ~~~~-~~~~| -~~~~-~~C- CGUAAA-CAU 2521 U--GAUA-GA |UU|------ ------(--- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---)------ ---------- --a(auac)a ac--C-CCUA 2701 U-C|--C|GC C-CGGG-AAC UACGAGC(-- -AC-ca-)GC UUA--AAACC CAAAGGAC-U 2761 UG|GCGGUG- CUUUAGA-UC CUACUAGA|G GAGCCUGU-U |CUAGA--AC CG(AUAACCC 2821 C--------- ----)CGUUC A-ACCUCACC UUUCCUUGUU ---------- ---------- 2881 (-------uu uc-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---CGC CUA-UA|UA- 3121 |CC|-GC--C |G------UC GU-CA|G-CC CAC-|CCU(A --UGA)AGG- -----(acu- 3181 a--)-----a a-AGUAGGCU AAA-UUGG-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ----cacag- 3781 ---------C CCAGAA-CGU C-AGGCCGAG G|UGUA|GCG UAU------- ---------G 3841 G-AAGG-GG- -A-AGA--AA -UGGGCUACA UU--CCCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--u au---)---- ---------- ---------- UAG-GGCAC- 4021 ---------- ------ACGA --AUGGU-GU G-C(------ ---------- ---------- 4081 ---------- ---------- UGAAA--C-) G-CA-C--AU -Cu-UGAAG- -GAGGAUUUA 4141 G-C--AGUAA --gcagga(- -agua-ga-- --)gcguucu g-cug----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -AAA--CUGG 4261 CUC~~~-~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~-~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~- ~~~~~~~~~~ -~~~~~~~~< ~~~~~~~~~- 4381 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4501 ~~~~~~~~~~ ~~~~~~~~~~ ~~>~~~~~~~ ~~~~~~~~-- ~~~~~~~~~~ ~~~~~~~~~~ 4561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~-~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~-~~(~~~ 4621 -~)~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS mt.P.scott 5213 bp RNA RNA 10-AUG-1994 DEFINITION Mitochondrion Pogonophryne scotti.; 12S ribosomal RNA. ACCESSION Z32716 KEYWORDS 12S ribosomal RNA. SOURCE Mitochondrion Pogonophryne scotti. ORGANISM Mitochondrion Pogonophryne scotti. REFERENCE 1 (bases 1 to 373) AUTHORS Battaglia,B. and Meyer,A. Bargelloni,L., Ritchie,P., Patarnello,T., Lambert,D., TITLE Mitochondrial and nuclear phylogenies of fishes from Antarctica (suborder Notothenioidei) and the evolution of antifreeze glycopeptides JOURNAL Unpublished STANDARD No information REFERENCE 2 (bases 1 to 373) AUTHORS Bargelloni,L. TITLE Direct Submission JOURNAL Submitted (25-APR-1994) to the EMBL/GenBank/DDBJ databases. Luca Bargelloni, Biology, University of Padova, Via Trieste 75, Padova, 35121, Italy STANDARD full automatic COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: Z32716 NCBI gi: 530763 BASE COUNT 104 a 99 c 88 g 82 t 4840 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --~~~~~~~~ 661 (~~~-)~-~~ ~|~~~~~-~~ ~~~-~~~~~~ -~-~~~~-~~ |~~~~~~~~~ ~~~~-~~~~~ 721 ~~~~~~~-~~ ~~~~~|~~~~ ~~~~~~~(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------~~~ ~)~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~-~~|~ ~~~~~~~~~~ ~~~~~---~~ ~|~~~~~~~~ -~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(------- -----)---- 1261 ---------- ---------- --~~~~~~~- ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~(~~~~ ~~~------- ---------- ---------- ------)--- 1381 ---~~|---~ ~~~~~--~~~ ~|~~~~~-~~ --|~~~~~~~ (-~~~--)~~ ~~~~~~~~~| 1441 ~~~~------ ---------- ---------- -|-~~~~--( ~~~~-)~~~~ ~~~~~~~~-~ 1501 ~~~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~( ---------- ---~~~~~)- ----~-~~~| 1561 ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~|-~~~ 1921 -~~~-~~~~~ ~~~~~~(-~~ ~~~~~~~~~~ ~~~~-~~)-~ ~~~~~~|--- -~~~~~~~-- 1981 ~~~~~-~~~~ ~~~-~~~~~~ ~~~~~~|~~~ ~~~~~~~~-- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 -~~~~~~~~~ -~~~~~~~~~ ~~~~~~--~~ -----|~~~~ ~~~~~~-~~~ ----~~~~(~ 2341 ~~~~~)~~~- ~~~------~ ~~~~~~~~~~ ~~~------- -----~~~~~ -~~~(-~~~~ 2401 -)~~|~---- ----~~~~~~ ~~~~~~~~~~ ~~---~~~-~ ~~~--~~~~~ ~~~~~-~~~~ 2461 ~-~~~---~~ ~~~~~~~~~( ~~~~~~~~~) ~~~~-~~~~| -~~~~-~GC- CGUAAA-CAU 2521 U--GAUA-GA |UU|------ ------(--- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---)------ ---------- --a(auac)a ac--C-CCUA 2701 U-C|--C|GC C-CGGG-AAC UACGAGC(-- -AC-ca-)GC UUA--AAACC CAAAGGAC-U 2761 UG|GCGGUG- CUUUAGA-UC CUACUAGA|G GAGCCUGU-U |CUAGA--AC CG(AUAACCC 2821 C--------- ----)CGUUC A-ACCUCACC UUUCCUUGUU ---------- ---------- 2881 (-------uu cc-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---CGC CUA-UA|UA- 3121 |CC|-GC--C |G------UC GU-CA|G-CC CAC-|CCU(A --UGA)AGG- -----(uuu- 3181 aaa)------ --AGUAGGCU CAA-UUGG-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ----cacag- 3781 ---------C CCAGAA-CGU C-AGGCCGAG G|UGUA|GCG UAU------- ---------G 3841 G-A-AA-GGG -A-AGA--AA -UGGGCUACA UU--CCCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--u cu---)---- ---------- ---------- UAG-GGCAC- 4021 ---------- ------ACGA --AUGGU-GU G-C(------ ---------- ---------- 4081 ---------- ---------- UGAAA--C-) G-CA-C--AU -Cu-UGAAG- -GAGGAUUUA 4141 G-C--AGUAA G-CAGGAA(- aua-gagc-- --)GUCCCGC U-Gaa----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -AUU--GGCU 4261 C~~~~~-~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~-~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~- ~~~~~~~~~~ -~~~~~~~~< ~~~~~~~~~- 4381 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4501 ~~~~~~~~~~ ~~~~~~~~~~ ~~>~~~~~~~ ~~~~~~~~-- ~~~~~~~~~~ ~~~~~~~~~~ 4561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~-~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~-~~(~~~ 4621 -~)~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS mt.C.mawso 5213 bp RNA RNA 10-AUG-1994 DEFINITION Mitochondrion Cygnodraco mawsoni.; 12S ribosomal RNA. ACCESSION Z32706 KEYWORDS 12S ribosomal RNA. SOURCE Mitochondrion Cygnodraco mawsoni. ORGANISM Mitochondrion Cygnodraco mawsoni. REFERENCE 1 (bases 1 to 373) AUTHORS Bargelloni,L., Ritchie,P., Patarnello,T., Lambert,D., Battaglia,B. and Meyer,A. TITLE antifreeze glycopeptides Mitochondrial and nuclear phylogenies of fishes from Antarctica (suborder Notothenioidei) and the evolution of JOURNAL Unpublished STANDARD No information REFERENCE 2 (bases 1 to 373) AUTHORS Bargelloni,L. TITLE Direct Submission JOURNAL Submitted (25-APR-1994) to the EMBL/GenBank/DDBJ databases. Luca Bargelloni, Biology, University of Padova, Via Trieste 75, Padova, 35121, Italy STANDARD full automatic COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: Z32706 NCBI gi: 530373 BASE COUNT 104 a 98 c 88 g 83 t 4840 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --~~~~~~~~ 661 (~~~-)~-~~ ~|~~~~~-~~ ~~~-~~~~~~ -~-~~~~-~~ |~~~~~~~~~ ~~~~-~~~~~ 721 ~~~~~~~-~~ ~~~~~|~~~~ ~~~~~~~(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------~~~ ~)~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~-~~|~ ~~~~~~~~~~ ~~~~~---~~ ~|~~~~~~~~ -~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(------- -----)---- 1261 ---------- ---------- --~~~~~~~- ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~(~~~~ ~~~------- ---------- ---------- ------)--- 1381 ---~~|---~ ~~~~~--~~~ ~|~~~~~-~~ --|~~~~~~~ (-~~~--)~~ ~~~~~~~~~| 1441 ~~~~------ ---------- ---------- -|-~~~~--( ~~~~-)~~~~ ~~~~~~~~-~ 1501 ~~~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~( ---------- ---~~~~~)- ----~-~~~| 1561 ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~|-~~~ 1921 -~~~-~~~~~ ~~~~~~(-~~ ~~~~~~~~~~ ~~~~-~~)-~ ~~~~~~|--- -~~~~~~~-- 1981 ~~~~~-~~~~ ~~~-~~~~~~ ~~~~~~|~~~ ~~~~~~~~-- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 -~~~~~~~~~ -~~~~~~~~~ ~~~~~~--~~ -----|~~~~ ~~~~~~-~~~ ----~~~~(~ 2341 ~~~~~)~~~- ~~~------~ ~~~~~~~~~~ ~~~------- -----~~~~~ -~~~(-~~~~ 2401 -)~~|~---- ----~~~~~~ ~~~~~~~~~~ ~~---~~~-~ ~~~--~~~~~ ~~~~~-~~~~ 2461 ~-~~~---~~ ~~~~~~~~~( ~~~~~~~~~) ~~~~-~~~~| -~~~~-~GC- CGUAAA-CAU 2521 U--GAUA-GA |UU|------ ------(--- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---)------ ---------- --a(guac)a ac--C-CCUA 2701 U-C|--C|GC C-CGGG-AAC UACGAGC(-- -AC-ca-)GC UUA--AAACC CAAAGGAC-U 2761 UG|GCGGUG- CUUUAGA-UC CUACUAGA|G GAGCCUGU-U |CUGCA--AC CG(AUAACCC 2821 C--------- ----)CGUUC A-ACCUCACC CUUCCUUGUU ---------- ---------- 2881 (-------uu cc-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---CGC CUA-UA|UA- 3121 |CC|-GC--C |G------UC GU-CA|G-CC CAC-|CCU(A --UGA)GGG- -----(ucu- 3181 aaa)------ --AGUAAGCU AAA-UUGG-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ----cacag- 3781 ---------C CCAAAA-CGU C-AGGCCGAG G|UGUA|GCG UAU------- ---------G 3841 G-A-AG-GGG -A-AGA--AA -UGGGCUACA UU--CCCUG- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--u au---)---- ---------- ---------- UAG-GGcau- 4021 ---------- ------ACGA --AUCGU-GU G-U(------ ---------- ---------- 4081 ---------- ---------- UGAAA--C-) A-CA-C--AU -Cu-UGAAG- -GAGGAUUUA 4141 G-C--AGUAA G-CAGGAA(- aua-gagc-- --)GUCCUGC U-gaa----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -AUU--GGCU 4261 C~~~~~-~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~-~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~- ~~~~~~~~~~ -~~~~~~~~< ~~~~~~~~~- 4381 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4501 ~~~~~~~~~~ ~~~~~~~~~~ ~~>~~~~~~~ ~~~~~~~~-- ~~~~~~~~~~ ~~~~~~~~~~ 4561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~-~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~-~~(~~~ 4621 -~)~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS mt.G.acuti 5213 bp RNA RNA 10-AUG-1994 DEFINITION Mitochondrion Gymnodraco acuticeps.; 12S ribosomal RNA. ACCESSION Z32709 KEYWORDS 12S ribosomal RNA. SOURCE Mitochondrion Gymnodraco acuticeps. ORGANISM Mitochondrion Gymnodraco acuticeps. REFERENCE 1 (bases 1 to 373) AUTHORS Bargelloni,L., Ritchie,P., Patarnello,T., Lambert,D., Battaglia,B. and Meyer,A. TITLE antifreeze glycopeptides Mitochondrial and nuclear phylogenies of fishes from Antarctica (suborder Notothenioidei) and the evolution of JOURNAL Unpublished STANDARD No information REFERENCE 2 (bases 1 to 373) AUTHORS Bargelloni,L. TITLE Direct Submission JOURNAL Submitted (25-APR-1994) to the EMBL/GenBank/DDBJ databases. Luca Bargelloni, Biology, University of Padova, Via Trieste 75, Padova, 35121, Italy STANDARD full automatic COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: Z32709 NCBI gi: 530379 BASE COUNT 104 a 97 c 89 g 83 t 4840 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ----|----- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --~~~~~~~~ 661 (~~~-)~-~~ ~|~~~~~-~~ ~~~-~~~~~~ -~-~~~~-~~ |~~~~~~~~~ ~~~~-~~~~~ 721 ~~~~~~~-~~ ~~~~~|~~~~ ~~~~~~~(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------~~~ ~)~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~-~~|~ ~~~~~~~~~~ ~~~~~---~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~~~~ -----)---- 1261 ---------- ---------- --~~--~~~- ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~(~~~~ ~~~------- ---------- ---------- ------)--- 1381 ---~~|---~ ~~~~~--~~~ ~|~~~~~-~~ --|~~~~~~~ (-~~~--)~~ ~~~~~~~~~| 1441 ~~~~------ ---------- ---------- -|-~~~~--( ~~~~-)~~~~ ~~~~~~~~~~ 1501 ~~~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~( ---------- ---~~~~~)- ----~-~~~| 1561 ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~|-~~~ 1921 -~~~-~~~~~ ~~~~~~(-~~ ~~~~~~~~~~ ~~~~-~~)-~ ~~~~~~|--- -~~~~~~~-- 1981 ~~~~~-~~~~ ~~~-~~~~~~ ~~~~~~|~~~ ~~~~~~~~-- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 -~~~~~~~~~ -~~~~~~~~~ ~~~~~~--~~ -----|~~~~ ~~~~~~-~~~ ----~~~~(~ 2341 ~~~~~)~~~- ~~~------~ ~~~~~~~~~~ ~~~------- -----~~~~~ -~~~(-~~~~ 2401 -)~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~---~~~-~ ~~~--~~~~~ ~~~~~-~~~~ 2461 ~-~~~---~~ ~~~~~~~~~( ~~~~~~~~~) ~~~~-~~~~| ~~~~~~~GC- CGUAAA-CAU 2521 U--GAUA-GA |UU|------ ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- --a(auac)a ---ccccCUA 2701 U-C|--C|GC C-CGGG-AAC UACGAGC(-- -ACCA--)GC UUA--AAACC CAAAGGAC-U 2761 UG|GCGGUG- CUUUAGA-UC CUACUAGA|G GAGCCUGU-U |CUAGA--AC CG(AUAACCC 2821 C--------- ----)CGUUC A-ACCUCACC UUUCCUUGUU ---------- ---------- 2881 (-------uu uc-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---CGC CUA-UA|UA- 3121 |CC|-GC--C |G------UC GU-CA|G-CC CAC-|CCU(A --UGA)AGG- -----(ucu- 3181 aa-)------ a-aGUAGGCU AAA-UUGG-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ----cacag- 3781 ---------C CCAGAA-CGU C-AGGCCGAG G|UGUA|GCG UAU------- ---------G 3841 G-A-AG-GG- GA-AGA--AA -UGGGCUACA UU--CCCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--u au---)---- ---------- ---------- UAG-GGCAC- 4021 ---------- ------ACGA --AUGGU-AU G-C(------ ---------- ---------- 4081 ---------- ---------- UGAAAC---) G-CA-C--AU CU--UGAAG- -GAGGAUUUA 4141 G-C--AGUAA G-CAGGAA(- guaga-gc-- --)GUCCUGC U-GAAA---- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -UU---GGCU 4261 C~~~~~-~~- ~~~~~~~~-~ -~~~~~~~~~ ~-~~~--~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~- ~~~~~~~~~~ -~~~~~~~~< ~~~~~~~~~- 4381 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4501 ~~~~~~~~~~ ~~~~~~~~~~ ~~>~~~~~~~ ~~~~~~~~-- ~~~~~~~~~~ ~~~~~~~~~~ 4561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~-~ ~~~~~~~~~~ ~~~~~~~~-~ ~~~-~~(~~~ 4621 -~)~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS mt.P.charc 5213 bp RNA RNA 10-AUG-1994 DEFINITION Mitochondrion Parachaenichthys charcoti.; 12S ribosomal RNA. ACCESSION Z32714 KEYWORDS 12S ribosomal RNA. SOURCE Mitochondrion Parachaenichthys charcoti. ORGANISM Mitochondrion Parachaenichthys charcoti. REFERENCE 1 (bases 1 to 373) AUTHORS Battaglia,B. and Meyer,A. Bargelloni,L., Ritchie,P., Patarnello,T., Lambert,D., TITLE Mitochondrial and nuclear phylogenies of fishes from Antarctica (suborder Notothenioidei) and the evolution of antifreeze glycopeptides JOURNAL Unpublished STANDARD No information REFERENCE 2 (bases 1 to 373) AUTHORS Bargelloni,L. TITLE Direct Submission JOURNAL Submitted (25-APR-1994) to the EMBL/GenBank/DDBJ databases. Luca Bargelloni, Biology, University of Padova, Via Trieste 75, Padova, 35121, Italy STANDARD full automatic COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: Z32714 NCBI gi: 530749 BASE COUNT 102 a 99 c 91 g 81 t 4840 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ----|----- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --~~~~~~~~ 661 (~~~-)~-~~ ~|~~~~~-~~ ~~~-~~~~~~ -~-~~~~-~~ |~~~~~~~~~ ~~~~-~~~~~ 721 ~~~~~~~-~~ ~~~~~|~~~~ ~~~~~~~(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------~~~ ~)~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~-~~|~ ~~~~~~~~~~ ~~~~~---~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~~~~ -----)---- 1261 ---------- ---------- --~~--~~~- ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~(~~~~ ~~~------- ---------- ---------- ------)--- 1381 ---~~|---~ ~~~~~--~~~ ~|~~~~~-~~ --|~~~~~~~ (-~~~--)~~ ~~~~~~~~~| 1441 ~~~~------ ---------- ---------- -|-~~~~--( ~~~~-)~~~~ ~~~~~~~~~~ 1501 ~~~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~( ---------- ---~~~~~)- ----~-~~~| 1561 ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~|-~~~ 1921 -~~~-~~~~~ ~~~~~~(-~~ ~~~~~~~~~~ ~~~~-~~)-~ ~~~~~~|--- -~~~~~~~-- 1981 ~~~~~-~~~~ ~~~-~~~~~~ ~~~~~~|~~~ ~~~~~~~~-- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 -~~~~~~~~~ -~~~~~~~~~ ~~~~~~--~~ -----|~~~~ ~~~~~~-~~~ ----~~~~(~ 2341 ~~~~~)~~~- ~~~------~ ~~~~~~~~~~ ~~~------- -----~~~~~ -~~~(-~~~~ 2401 -)~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~---~~~-~ ~~~--~~~~~ ~~~~~-~~~~ 2461 ~-~~~---~~ ~~~~~~~~~( ~~~~~~~~~) ~~~~-~~~~| ~~~~~~~GC- CGUAAA-CAU 2521 U--GAUA-GA |uu|------ ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- --a(auac)a ---acccCUA 2701 U-C|--C|GC C-CGGG-AAC UACGAGC(-- -ACCA--)GC UUG--AAACC CAAAGGAC-U 2761 UG|GCGGUG- CUUUAGA-UC CUACUAGA|G GAGCCUGU-U |CUAUA--AC CG(AUAACCC 2821 C--------- ----)CGUUC A-ACCUCACC UUUCCUUGUU ---------- ---------- 2881 (-------cc cc-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---CGC CUA-UA|UA- 3121 |CC|-GC--C |G------UC GU-CA|G-CC CAC-|CCU(A --UGA)AGG- -----(ucu- 3181 aa-)------ a-aGUAGGCU AAA-UUGG-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ----cacag- 3781 ---------C CCAAAA-CGU C-AGGCCGAG G|UGUA|GCG UAU------- ---------G 3841 G-A-AG-GG- GA-AGA--AA -UGGGCUACA UU--CCCUG- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--u gu---)---- ---------- ---------- CAG-GGCAU- 4021 ---------- ------ACGA --AUGGU-GU G-U(------ ---------- ---------- 4081 ---------- ---------- UGAAAC---) A-CA-C--AU CU--UGAAG- -GAGGAUUUA 4141 G-C--AGUAA G-CAGGGA(- gcaga-gc-- --)GUCCUGC U-GAAA---- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -UU---GGCU 4261 C~~~~~-~~- ~~~~~~~~-~ -~~~~~~~~~ ~-~~~--~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~- ~~~~~~~~~~ -~~~~~~~~< ~~~~~~~~~- 4381 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4501 ~~~~~~~~~~ ~~~~~~~~~~ ~~>~~~~~~~ ~~~~~~~~-- ~~~~~~~~~~ ~~~~~~~~~~ 4561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~-~ ~~~~~~~~~~ ~~~~~~~~-~ ~~~-~~(~~~ 4621 -~)~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS mt.B.varie 5213 bp RNA RNA 10-AUG-1994 DEFINITION Mitochondrion Bovichtus variegatus.; 12S ribosomal RNA. ACCESSION Z32702 KEYWORDS 12S ribosomal RNA. SOURCE Mitochondrion Bovichtus variegatus. ORGANISM Mitochondrion Bovichtus variegatus. REFERENCE 1 (bases 1 to 374) AUTHORS Battaglia,B. and Meyer,A. Bargelloni,L., Ritchie,P., Patarnello,T., Lambert,D., TITLE Mitochondrial and nuclear phylogenies of fishes from Antarctica (suborder Notothenioidei) and the evolution of antifreeze glycopeptides JOURNAL Unpublished STANDARD No information REFERENCE 2 (bases 1 to 374) AUTHORS Bargelloni,L. TITLE Direct Submission JOURNAL Submitted (25-APR-1994) to the EMBL/GenBank/DDBJ databases. Luca Bargelloni, Biology, University of Padova, Via Trieste 75, Padova, 35121, Italy STANDARD full automatic COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: Z32702 NCBI gi: 530362 BASE COUNT 105 a 99 c 80 g 90 t 4839 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- -~~~~~~~~~ 661 (~~~-)~-~~ ~|~~~~~-~~ ~~~-~~~~~~ -~-~~~~-~~ |~~~~~~~~~ ~~~~-~~~~~ 721 ~~~~~~~-~~ ~~~~~|~~~~ ~~~~~~~(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------~~~ ~)~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~-~~|~ ~~~~~~~~~~ ~~~~~---~~ ~|~~~~~~~~ -~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~~~~ -----)---- 1261 ---------- ---------- --~~--~~~- ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~(~~~~ ~~~------- ---------- ---------- ------)--- 1381 ---~~|---~ ~~~~~--~~~ ~|~~~~~-~~ --|~~~~~~~ (-~~~--)~~ ~~~~~~~~~| 1441 ~~~~------ ---------- ---------- -|-~~~~--( ~~~~-)~~~~ ~~~~~~~~-~ 1501 ~~~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~( ---------- ---~~~~~)- ----~-~~~| 1561 ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~|-~~~ 1921 -~~~-~---~ ~~~~~~(-~~ ~~~~~~~~~~ ~~~~-~~)-~ ~~~~~~|--- -~~~~~~~-- 1981 ~~~~~-~~~~ ~~~-~~~~~~ ~~~~~~|~~~ ~~~~~~~~-- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 -~~~~~~~~~ -~~~~~~~~~ ~~~~~~--~~ -----|~~~~ ~~~~~~-~~~ ----~~~~(~ 2341 ~~~~~)~~~- ~~~------~ ~~~~-~~~~~ ~~~------- -----~~~~~ -~~~(-~~~~ 2401 -)~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~---~~~-~ ~~~--~~~~~ ~~~~~-~~~~ 2461 ~-~~~---~~ ~~~~~~~~~( ~~~~~~~~~) ~~~~-~~~~| -~~~~-~~C- CCUAAA-CAU 2521 U--UAUA-GU |UC|------ ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- --c(cuac)a ---accUCUA 2701 U-U|--C|GC C-UGGA-AAC UACGAGC(-- -GCGA--)GC UUA--AAACC CAAAGGAC-U 2761 UG|GCGGUG- CUUUACA-UC CUUCUAGA|G GGACACGU-C |CUAGA--AC CG(ACAACCC 2821 C--------- ----)CGUUC A-ACCUCACC UUUCCUUGUU ---------- ---------- 2881 (-------uu uc-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---c---CGC CUA-UA|UA- 3121 |CC|-AC--C |G------UC GU-AA|G-CU GAC-|CCU(G --UGA)AGG- -----(aau- 3181 c--)-----a u-aGUAAGCU CAA-CUGG-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ----cacag- 3781 ---------C CCAGAA-CGU C-AGGUCGAG G|UGUA|GUG UAU------- ---------G 3841 G-A-AA-GG- GA-AGA--AA -CGCGUCCCA UU--UUCU-- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(-au uaa--)---- ---------- ---------- -AG-AAccc- 4021 ---------- ------cCCG --AUAAU-GU G-C(------ ---------- ---------- 4081 ---------- ---------- UGAAAC---) G-CA-U--GU UUuaUGAAG- -UAGAAUUUA 4141 G-C--AGUAA G-CAGGAA(- gcaga-gc-- --)GUCCUGC U-GAAA---- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -UU---GGCU 4261 C~~~~~~~~- ~~~~~~~~~~ -~~~~~~~~~ ~-~~~~~~~~ ~~~-~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~- ~~~~~~~~~~ -~~~~~~~~< ~~~~~~~~~- 4381 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~- -~~~~-~~~~ ~~~~-~~~~~ ~~~~~~~~~~ 4441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4501 ~~~~~~~~~~ ~~~~~~~~~~ ~~>~~~~~~~ ~~~~~~~~-- ~~~~~~~~~~ ~~~~~~~~~~ 4561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~-~~~~-~ ~~~~~~~~~~ ~~~~~~~~-~ ~~~-~~(~~~ 4621 -~)~~~-~~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS mt.C.acera 5213 bp RNA RNA 10-AUG-1994 DEFINITION Mitochondrion Chaenocephalus aceratus.; 12S ribosomal RNA. ACCESSION Z32703 KEYWORDS 12S ribosomal RNA. SOURCE Mitochondrion Chaenocephalus aceratus. ORGANISM Mitochondrion Chaenocephalus aceratus. REFERENCE 1 (bases 1 to 373) AUTHORS Bargelloni,L., Ritchie,P., Patarnello,T., Lambert,D., Battaglia,B. and Meyer,A. TITLE Antarctica (suborder Notothenioidei) and the evolution of antifreeze glycopeptides Mitochondrial and nuclear phylogenies of fishes from JOURNAL Unpublished STANDARD No information REFERENCE 2 (bases 1 to 373) AUTHORS Bargelloni,L. TITLE Direct Submission JOURNAL Submitted (25-APR-1994) to the EMBL/GenBank/DDBJ databases. Luca Bargelloni, Biology, University of Padova, Via Trieste 75, Padova, 35121, Italy STANDARD full automatic COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: Z32703 NCBI gi: 530364 BASE COUNT 105 a 96 c 90 g 82 t 4840 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --~~~~~~~~ 661 (~~~-)~-~~ ~|~~~~~-~~ ~~~-~~~~~~ -~-~~~~-~~ |~~~~~~~~~ ~~~~-~~~~~ 721 ~~~~~~~-~~ ~~~~~|~~~~ ~~~~~~~(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------~~~ ~)~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~-~~|~ ~~~~~~~~~~ ~~~~~---~~ ~|~~~~~~~~ -~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(------- -----)---- 1261 ---------- ---------- --~~~~~~~- ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~(~~~~ ~~~------- ---------- ---------- ------)--- 1381 ---~~|---~ ~~~~~--~~~ ~|~~~~~-~~ --|~~~~~~~ (-~~~--)~~ ~~~~~~~~~| 1441 ~~~~------ ---------- ---------- -|-~~~~--( ~~~~-)~~~~ ~~~~~~~~-~ 1501 ~~~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~( ---------- ---~~~~~)- ----~-~~~| 1561 ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~|-~~~ 1921 -~~~-~~~~~ ~~~~~~(-~~ ~~~~~~~~~~ ~~~~-~~)-~ ~~~~~~|--- -~~~~~~~-- 1981 ~~~~~-~~~~ ~~~-~~~~~~ ~~~~~~|~~~ ~~~~~~~~-- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 -~~~~~~~~~ -~~~~~~~~~ ~~~~~~--~~ -----|~~~~ ~~~~~~-~~~ ----~~~~(~ 2341 ~~~~~)~~~- ~~~------~ ~~~~~~~~~~ ~~~------- -----~~~~~ -~~~(-~~~~ 2401 -)~~|~---- ----~~~~~~ ~~~~~~~~~~ ~~---~~~-~ ~~~--~~~~~ ~~~~~-~~~~ 2461 ~-~~~---~~ ~~~~~~~~~( ~~~~~~~~~) ~~~~-~~~~| -~~~~-~GC- CGUAAA-CAU 2521 U--GAUA-GA |UU|------ ------(--- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---)------ ---------- --a(auac)a ac--C-CCUA 2701 U-C|--C|GC C-CGGG-AAC UACGAGC(-- -AC-ca-)GC UUA--AAACC CAAAGGAC-U 2761 UG|GCGGUG- CUUUAGA-UC CUACUAGA|G GAGCCUGU-U |CUAGA--AC CG(AUAACCC 2821 C--------- ----)CGUUC A-ACCUCACC UUUCCUUGUU ---------- ---------- 2881 (-------uu uc-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---CGC CUA-UA|UA- 3121 |CC|-GC--C |G------UC GU-CA|G-CC CAC-|CCU(A --UGA)AGG- -----(acu- 3181 aaa)------ --AGUAGGCU AAA-UUGG-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ----cacag- 3781 ---------C CCAGAA-CGU C-AGGCCGAG G|UGUA|GCG UAU------- ---------G 3841 G-A-AG-GGG -A-AGA--AA -UGGGCUACA UU--CCCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--u au---)---- ---------- ---------- UAG-GGCAC- 4021 ---------- ------ACGA --AUGGU-GU G-C(------ ---------- ---------- 4081 ---------- ---------- UGAAA--C-) G-CA-C--AU -Cu-UGAAG- -GAGGAUUUA 4141 G-C--AGUAA G-CAGGAA(- gua-gagc-- --)GUUCUGC U-gaa----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -ACU--GGCU 4261 C~~~~~-~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~-~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~- ~~~~~~~~~~ -~~~~~~~~< ~~~~~~~~~- 4381 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4501 ~~~~~~~~~~ ~~~~~~~~~~ ~~>~~~~~~~ ~~~~~~~~-- ~~~~~~~~~~ ~~~~~~~~~~ 4561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~-~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~-~~(~~~ 4621 -~)~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS mt.C.hamat 5213 bp RNA RNA 10-AUG-1994 DEFINITION Mitochondrion Chionodraco hamatus.; 12S ribosomal RNA. ACCESSION Z32704 KEYWORDS 12S ribosomal RNA. SOURCE Mitochondrion Chionodraco hamatus. ORGANISM Mitochondrion Chionodraco hamatus. REFERENCE 1 (bases 1 to 373) AUTHORS Bargelloni,L., Ritchie,P., Patarnello,T., Lambert,D., Battaglia,B. and Meyer,A. TITLE antifreeze glycopeptides Mitochondrial and nuclear phylogenies of fishes from Antarctica (suborder Notothenioidei) and the evolution of JOURNAL Unpublished STANDARD No information REFERENCE 2 (bases 1 to 373) AUTHORS Bargelloni,L. TITLE Direct Submission JOURNAL Submitted (25-APR-1994) to the EMBL/GenBank/DDBJ databases. Luca Bargelloni, Biology, University of Padova, Via Trieste 75, Padova, 35121, Italy STANDARD full automatic COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: Z32704 NCBI gi: 530371 BASE COUNT 106 a 97 c 89 g 81 t 4840 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --~~~~~~~~ 661 (~~~-)~-~~ ~|~~~~~-~~ ~~~-~~~~~~ -~-~~~~-~~ |~~~~~~~~~ ~~~~-~~~~~ 721 ~~~~~~~-~~ ~~~~~|~~~~ ~~~~~~~(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------~~~ ~)~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~-~~|~ ~~~~~~~~~~ ~~~~~---~~ ~|~~~~~~~~ -~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(------- -----)---- 1261 ---------- ---------- --~~~~~~~- ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~(~~~~ ~~~------- ---------- ---------- ------)--- 1381 ---~~|---~ ~~~~~--~~~ ~|~~~~~-~~ --|~~~~~~~ (-~~~--)~~ ~~~~~~~~~| 1441 ~~~~------ ---------- ---------- -|-~~~~--( ~~~~-)~~~~ ~~~~~~~~-~ 1501 ~~~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~( ---------- ---~~~~~)- ----~-~~~| 1561 ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~|-~~~ 1921 -~~~-~~~~~ ~~~~~~(-~~ ~~~~~~~~~~ ~~~~-~~)-~ ~~~~~~|--- -~~~~~~~-- 1981 ~~~~~-~~~~ ~~~-~~~~~~ ~~~~~~|~~~ ~~~~~~~~-- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 -~~~~~~~~~ -~~~~~~~~~ ~~~~~~--~~ -----|~~~~ ~~~~~~-~~~ ----~~~~(~ 2341 ~~~~~)~~~- ~~~------~ ~~~~~~~~~~ ~~~------- -----~~~~~ -~~~(-~~~~ 2401 -)~~|~---- ----~~~~~~ ~~~~~~~~~~ ~~---~~~-~ ~~~--~~~~~ ~~~~~-~~~~ 2461 ~-~~~---~~ ~~~~~~~~~( ~~~~~~~~~) ~~~~-~~~~| -~~~~-~GC- CGUAAA-CAU 2521 U--GAUA-GA |UU|------ ------(--- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---)------ ---------- --a(auac)a ac--C-CCUA 2701 U-C|--C|GC C-CGGG-AAC UACGAGC(-- -AC-ca-)GC UUA--AAACC CAAAGGAC-U 2761 UG|GCGGUG- CUUUAGA-UC CUACUAGA|G GAGCCUGU-U |CUAGA--AC CG(AUAACCC 2821 C--------- ----)CGUUC A-ACCUCACC UUUCCUUGUU ---------- ---------- 2881 (-------uu uc-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---CGC CUA-UA|UA- 3121 |CC|-GC--C |G------UC GU-CA|G-CC CAC-|CCU(A --UGA)AGG- -----(acu- 3181 aaa)------ --AGUAGGCU AAA-UUGG-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ----cacag- 3781 ---------C CCAGAA-CGU C-AGGCCGAG G|UGUA|GCG UAU------- ---------G 3841 G-A-AG-GGG -A-AGA--AA -UGGGCUACA UU--CCCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--u au---)---- ---------- ---------- UAG-GGCAC- 4021 ---------- ------ACGA --AUGGU-GU G-C(------ ---------- ---------- 4081 ---------- ---------- UGAAA--C-) A-CA-C--AU -Cu-UGAAG- -GAGGAUUUA 4141 G-C--AGUAA G-CAGGAA(- gua-gagc-- --)GUCCUGC U-gaa----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -ACU--GGCU 4261 C~~~~~-~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~-~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~- ~~~~~~~~~~ -~~~~~~~~< ~~~~~~~~~- 4381 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4501 ~~~~~~~~~~ ~~~~~~~~~~ ~~>~~~~~~~ ~~~~~~~~-- ~~~~~~~~~~ ~~~~~~~~~~ 4561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~-~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~-~~(~~~ 4621 -~)~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS mt.P.macro 5213 bp RNA RNA 10-AUG-1994 DEFINITION Mitochondrion Pagetopsis macropterus.; 12S ribosomal RNA. ACCESSION Z32748 KEYWORDS 12S ribosomal RNA. SOURCE Mitochondrion Pagetopsis macropterus. ORGANISM Mitochondrion Pagetopsis macropterus. REFERENCE 1 (bases 1 to 373) AUTHORS Bargelloni,L., Ritchie,P., Patarnello,T., Lambert,D., Battaglia,B. and Meyer,A. TITLE antifreeze Glycopeptides Mitochondrial and nuclear phylogenies of fishes from Antarctica (suborder Notothenioidei) and the evolution of JOURNAL Unpublished STANDARD No information REFERENCE 2 (bases 1 to 373) AUTHORS Bargelloni,L. TITLE Direct Submission JOURNAL Submitted (25-APR-1994) to the EMBL/GenBank/DDBJ databases. Luca Bargelloni, Biology, University of Padova, Via Trieste 75, Padova, 35121, Italy STANDARD full automatic COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: Z32748 NCBI gi: 530754 BASE COUNT 104 a 97 c 90 g 82 t 4840 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --~~~~~~~~ 661 (~~~-)~-~~ ~|~~~~~-~~ ~~~-~~~~~~ -~-~~~~-~~ |~~~~~~~~~ ~~~~-~~~~~ 721 ~~~~~~~-~~ ~~~~~|~~~~ ~~~~~~~(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------~~~ ~)~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~-~~|~ ~~~~~~~~~~ ~~~~~---~~ ~|~~~~~~~~ -~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(------- -----)---- 1261 ---------- ---------- --~~~~~~~- ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~(~~~~ ~~~------- ---------- ---------- ------)--- 1381 ---~~|---~ ~~~~~--~~~ ~|~~~~~-~~ --|~~~~~~~ (-~~~--)~~ ~~~~~~~~~| 1441 ~~~~------ ---------- ---------- -|-~~~~--( ~~~~-)~~~~ ~~~~~~~~-~ 1501 ~~~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~( ---------- ---~~~~~)- ----~-~~~| 1561 ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~|-~~~ 1921 -~~~-~~~~~ ~~~~~~(-~~ ~~~~~~~~~~ ~~~~-~~)-~ ~~~~~~|--- -~~~~~~~-- 1981 ~~~~~-~~~~ ~~~-~~~~~~ ~~~~~~|~~~ ~~~~~~~~-- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 -~~~~~~~~~ -~~~~~~~~~ ~~~~~~--~~ -----|~~~~ ~~~~~~-~~~ ----~~~~(~ 2341 ~~~~~)~~~- ~~~------~ ~~~~~~~~~~ ~~~------- -----~~~~~ -~~~(-~~~~ 2401 -)~~|~---- ----~~~~~~ ~~~~~~~~~~ ~~---~~~-~ ~~~--~~~~~ ~~~~~-~~~~ 2461 ~-~~~---~~ ~~~~~~~~~( ~~~~~~~~~) ~~~~-~~~~| -~~~~-~GC- CGUAAA-CAU 2521 U--GAUA-GA |UU|------ ------(--- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---)------ ---------- --a(auac)a ac--C-CCUA 2701 U-C|--C|GC C-CGGG-AAC UACGAGC(-- -AC-ca-)GC UUA--AAACC CAAAGGAC-U 2761 UG|GCGGUG- CUUUAGA-UC CUACUAGA|G GAGCCUGU-U |CUAGA--AC CG(AUACCCC 2821 C--------- ----)CGUUC A-ACCUCACC UUUCCUUGUU ---------- ---------- 2881 (-------uu uc-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---CGC CUA-UA|UA- 3121 |CC|-GC--C |G------UC GU-CA|G-CC CAC-|CCU(A --UGA)AGG- -----(acu- 3181 aaa)------ --AGUAGGCU AAA-UUGG-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ----cacag- 3781 ---------C CCAGAA-CGU C-AGGCCGAG G|UGUA|GCG UAU------- ---------G 3841 G-A-AG-GGG -A-AGA--AA -UGGGCUACA UU--CCCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--u ac---)---- ---------- ---------- UAG-GGuac- 4021 ---------- ------ACGA --AUGGU-GU G-C(------ ---------- ---------- 4081 ---------- ---------- UGAAA--C-) G-UA-C--AU -Cu-UGAAG- -GAGGAUUUA 4141 G-C--AGUAA G-CAGGAA(- gua-gagc-- --)GUCCUGC U-Gaa----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -ACU--GGCU 4261 C~~~~~-~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~-~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~- ~~~~~~~~~~ -~~~~~~~~< ~~~~~~~~~- 4381 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4501 ~~~~~~~~~~ ~~~~~~~~~~ ~~>~~~~~~~ ~~~~~~~~-- ~~~~~~~~~~ ~~~~~~~~~~ 4561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~-~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~-~~(~~~ 4621 -~)~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS mt.D.mawso 5213 bp RNA RNA 10-AUG-1994 DEFINITION Mitochondrion Dissostichus mawsoni.; 12S ribosomal RNA. ACCESSION Z32707 KEYWORDS 12S ribosomal RNA. SOURCE Mitochondrion Dissostichus mawsoni. ORGANISM Mitochondrion Dissostichus mawsoni. REFERENCE 1 (bases 1 to 373) AUTHORS Battaglia,B. and Meyer,A. Bargelloni,L., Ritchie,P., Patarnello,T., Lambert,D., TITLE Mitochondrial and nuclear phylogenies of fishes from Antarctica (suborder Notothenioidei) and the evolution of antifreeze glycopeptides JOURNAL Unpublished STANDARD No information REFERENCE 2 (bases 1 to 373) AUTHORS Bargelloni,L. TITLE Direct Submission JOURNAL Submitted (25-APR-1994) to the EMBL/GenBank/DDBJ databases. Luca Bargelloni, Biology, University of Padova, Via Trieste 75, Padova, 35121, Italy STANDARD full automatic COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: Z32707 NCBI gi: 530375 BASE COUNT 106 a 94 c 88 g 85 t 4840 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --~~~~~~~~ 661 (~~~-)~-~~ ~|~~~~~-~~ ~~~-~~~~~~ -~-~~~~-~~ |~~~~~~~~~ ~~~~-~~~~~ 721 ~~~~~~~-~~ ~~~~~|~~~~ ~~~~~~~(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------~~~ ~)~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~-~~|~ ~~~~~~~~~~ ~~~~~---~~ ~|~~~~~~~~ -~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(------- -----)---- 1261 ---------- ---------- --~~~~~~~- ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~(~~~~ ~~~------- ---------- ---------- ------)--- 1381 ---~~|---~ ~~~~~--~~~ ~|~~~~~-~~ --|~~~~~~~ (-~~~--)~~ ~~~~~~~~~| 1441 ~~~~------ ---------- ---------- -|-~~~~--( ~~~~-)~~~~ ~~~~~~~~-~ 1501 ~~~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~( ---------- ---~~~~~)- ----~-~~~| 1561 ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~|-~~~ 1921 -~~~-~~~~~ ~~~~~~(-~~ ~~~~~~~~~~ ~~~~-~~)-~ ~~~~~~|--- -~~~~~~~-- 1981 ~~~~~-~~~~ ~~~-~~~~~~ ~~~~~~|~~~ ~~~~~~~~-- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 -~~~~~~~~~ -~~~~~~~~~ ~~~~~~--~~ -----|~~~~ ~~~~~~-~~~ ----~~~~(~ 2341 ~~~~~)~~~- ~~~------~ ~~~~~~~~~~ ~~~------- -----~~~~~ -~~~(-~~~~ 2401 -)~~|~---- ----~~~~~~ ~~~~~~~~~~ ~~---~~~-~ ~~~--~~~~~ ~~~~~-~~~~ 2461 ~-~~~---~~ ~~~~~~~~~( ~~~~~~~~~) ~~~~-~~~~| -~~~~-~GC- CGUAAA-CAU 2521 U--GAUA-GA |UU|------ ------(--- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---)------ ---------- --a(auac)a ac--C-CCUA 2701 U-C|--C|GC C-CGGG-AAC UACGAGC(-- -AC-ca-)GC UUA--AAACC CAAAGGAC-U 2761 UG|GCGGUG- CUUUAGA-UC CUACUAGA|G GAGCCUGU-U |CUAGA--AC CG(AUAACCC 2821 C--------- ----)CGUUC A-ACCUCACC UUUCCUUGUU ---------- ---------- 2881 (-------uu uc-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---CGC CUA-UA|UA- 3121 |CC|-GC--C |G------UC GU-CA|G-CC CAC-|CCU(A --UGA)AGG- -----(uuu- 3181 aaa)------ --AGUAGGCU AAA-UUGG-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ----cauag- 3781 ---------C CCAGAA-CGU C-AGGCCGAG G|UGUA|GCG UAU------- ---------G 3841 G-A-AG-GGG -A-AGA--AA -UGGGCUACA UU--CCCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--u uu---)---- ---------- ---------- UAG-GGcaa- 4021 ---------- ------ACGA --AUGAU-AU G-C(------ ---------- ---------- 4081 ---------- ---------- UGAAA--C-) G-CA-C--AU -Cu-UGAAG- -GAGGAUUUA 4141 G-C--AGUAA G-CAGGAA(- gua-gagc-- --)GUCCCGC U-gaa----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -AUU--GGCU 4261 C~~~~~-~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~-~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~- ~~~~~~~~~~ -~~~~~~~~< ~~~~~~~~~- 4381 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4501 ~~~~~~~~~~ ~~~~~~~~~~ ~~>~~~~~~~ ~~~~~~~~-- ~~~~~~~~~~ ~~~~~~~~~~ 4561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~-~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~-~~(~~~ 4621 -~)~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS mt.G.gibbe 5213 bp RNA RNA 10-AUG-1994 DEFINITION Mitochondrion Gobionotothen gibberifrons.; 12S ribosomal RNA. ACCESSION Z32708 KEYWORDS 12S ribosomal RNA. SOURCE Mitochondrion Gobionotothen gibberifrons. ORGANISM Mitochondrion Gobionotothen gibberifrons. REFERENCE 1 (bases 1 to 373) AUTHORS Bargelloni,L., Ritchie,P., Patarnello,T., Lambert,D., Battaglia,B. and Meyer,A. TITLE antifreeze glycopeptides Mitochondrial and nuclear phylogenies of fishes from Antarctica (suborder Notothenioidei) and the evolution of JOURNAL Unpublished STANDARD No information REFERENCE 2 (bases 1 to 373) AUTHORS Bargelloni,L. TITLE Direct Submission JOURNAL Submitted (25-APR-1994) to the EMBL/GenBank/DDBJ databases. Luca Bargelloni, Biology, University of Padova, Via Trieste 75, Padova, 35121, Italy STANDARD full automatic COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: Z32708 NCBI gi: 530381 BASE COUNT 106 a 96 c 87 g 84 t 4840 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --~~~~~~~~ 661 (~~~-)~-~~ ~|~~~~~-~~ ~~~-~~~~~~ -~-~~~~-~~ |~~~~~~~~~ ~~~~-~~~~~ 721 ~~~~~~~-~~ ~~~~~|~~~~ ~~~~~~~(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------~~~ ~)~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~-~~|~ ~~~~~~~~~~ ~~~~~---~~ ~|~~~~~~~~ -~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(------- -----)---- 1261 ---------- ---------- --~~~~~~~- ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~(~~~~ ~~~------- ---------- ---------- ------)--- 1381 ---~~|---~ ~~~~~--~~~ ~|~~~~~-~~ --|~~~~~~~ (-~~~--)~~ ~~~~~~~~~| 1441 ~~~~------ ---------- ---------- -|-~~~~--( ~~~~-)~~~~ ~~~~~~~~-~ 1501 ~~~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~( ---------- ---~~~~~)- ----~-~~~| 1561 ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~|-~~~ 1921 -~~~-~~~~~ ~~~~~~(-~~ ~~~~~~~~~~ ~~~~-~~)-~ ~~~~~~|--- -~~~~~~~-- 1981 ~~~~~-~~~~ ~~~-~~~~~~ ~~~~~~|~~~ ~~~~~~~~-- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 -~~~~~~~~~ -~~~~~~~~~ ~~~~~~--~~ -----|~~~~ ~~~~~~-~~~ ----~~~~(~ 2341 ~~~~~)~~~- ~~~------~ ~~~~~~~~~~ ~~~------- -----~~~~~ -~~~(-~~~~ 2401 -)~~|~---- ----~~~~~~ ~~~~~~~~~~ ~~---~~~-~ ~~~--~~~~~ ~~~~~-~~~~ 2461 ~-~~~---~~ ~~~~~~~~~( ~~~~~~~~~) ~~~~-~~~~| -~~~~-~GC- CGUAAA-CAU 2521 U--GAUA-GA |CC|------ ------(--- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---)------ ---------- --a(auac)a ac--C-CCUA 2701 U-C|--C|GC C-CGGG-AAC UACGAGC(-- -AC-ca-)GC UUA--AAACC CAAAGGAC-U 2761 UG|GCGGUG- CUUUAGA-UC CUACUAGA|G GAGCCUGU-U |CUAGA--AC CG(AUAACCC 2821 C--------- ----)CGUUC A-ACCUCACC UUUCCUUGUU ---------- ---------- 2881 (-------uu uc-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---CGC CUA-UA|UA- 3121 |CC|-GC--C |G------UC GU-CA|G-CC CAC-|CCU(A --UGA)AGG- -----(uuu- 3181 aaa)------ --AGUAGGCU AAA-UUGG-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ----cauag- 3781 ---------C CCAGCA-CGU C-AGGCCGAG G|UGUA|GCG UAU------- ---------G 3841 G-A-AA-GGG -A-AGA--AA -UGGGCUACA UU--CCCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--a uu---)---- ---------- ---------- UAG-GGCAC- 4021 ---------- ------ACGA --AUGAU-AU G-C(------ ---------- ---------- 4081 ---------- ---------- UGAAA--C-) G-CA-C--AU -Cu-UGAAG- -GAGGAUUUA 4141 G-C--AGUAA G-UAGGAA(- gua-gagc-- --)GUCCUGC U-gaa----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -AUU--GGCU 4261 C~~~~~-~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~-~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~- ~~~~~~~~~~ -~~~~~~~~< ~~~~~~~~~- 4381 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4501 ~~~~~~~~~~ ~~~~~~~~~~ ~~>~~~~~~~ ~~~~~~~~-- ~~~~~~~~~~ ~~~~~~~~~~ 4561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~-~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~-~~(~~~ 4621 -~)~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS mt.N.corii 5213 bp RNA RNA 10-AUG-1994 DEFINITION Mitochondrion Notothenia coriiceps.; 12S ribosomal RNA. ACCESSION Z32712 KEYWORDS 12S ribosomal RNA. SOURCE Mitochondrion Notothenia coriiceps. ORGANISM Mitochondrion Notothenia coriiceps. REFERENCE 1 (bases 1 to 373) AUTHORS Bargelloni,L., Ritchie,P., Patarnello,T., Lambert,D., Battaglia,B. and Meyer,A. TITLE Antarctica (suborder Notothenioidei) and the evolution of antifreeze glycopeptides Mitochondrial and nuclear phylogenies of fishes from JOURNAL Unpublished STANDARD No information REFERENCE 2 (bases 1 to 373) AUTHORS Bargelloni,L. TITLE Direct Submission JOURNAL Submitted (25-APR-1994) to the EMBL/GenBank/DDBJ databases. Luca Bargelloni, Biology, University of Padova, Via Trieste 75, Padova, 35121, Italy STANDARD full automatic COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: Z32712 NCBI gi: 530731 BASE COUNT 103 a 94 c 89 g 87 t 4840 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ----|----- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --~~~~~~~~ 661 (~~~-)~-~~ ~|~~~~~-~~ ~~~-~~~~~~ -~-~~~~-~~ |~~~~~~~~~ ~~~~-~~~~~ 721 ~~~~~~~-~~ ~~~~~|~~~~ ~~~~~~~(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------~~~ ~)~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~-~~|~ ~~~~~~~~~~ ~~~~~---~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~~~~ -----)---- 1261 ---------- ---------- -~~~--~~~- ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~(~~~~ ~~~------- ---------- ---------- ------)--- 1381 ---~~|---~ ~~~~~--~~~ ~|~~~~~-~~ --|~~~~~~~ (-~~~--)~~ ~~~~~~~~~| 1441 ~~~~------ ---------- ---------- -|-~~~~--( ~~~~-)~~~~ ~~~~~~~~~~ 1501 ~~~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~( ---------- ---~~~~~)- ----~-~~~| 1561 ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~|-~~~ 1921 -~~~-~~~~~ ~~~~~~(-~~ ~~~~~~~~~~ ~~~~-~~)-~ ~~~~~~|--- -~~~~~~~-- 1981 ~~~~~-~~~~ ~~~-~~~~~~ ~~~~~~|~~~ ~~~~~~~~-- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 -~~~~~~~~~ -~~~~~~~~~ ~~~~~~--~~ -----|~~~~ ~~~~~~-~~~ ----~~~~(~ 2341 ~~~~~)~~~- ~~~------~ ~~~~~~~~~~ ~~~------- -----~~~~~ -~~~(-~~~~ 2401 -)~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~---~~~-~ ~~~--~~~~~ ~~~~~-~~~~ 2461 ~-~~~---~~ ~~~~~~~~~( ~~~~~~~~~) ~~~~-~~~~| ~~~~~~~GC- CGUAAA-CAU 2521 U--GAUA-GA |UU|------ ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- --a(auac)a ---ccccCUA 2701 U-C|--C|GC C-CGGG-AAA UACGAGC(-- -ACCA--)GC UUA--AAACC CAAAGGAC-U 2761 UG|GCGGUG- CUUUAGA-UC CUACUAGA|G GAGCCUGU-U |CUAGA--AC CG(AUAACCC 2821 C--------- ----)CGUUC A-ACCUCACC UUUCCUUGUU ---------- ---------- 2881 (-------uu uc-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---CGC CUA-UA|UA- 3121 |CC|-GC--C |G------UC GU-CA|G-CC CAC-|CCU(A --UGA)AGG- -----(uuu- 3181 aa-)------ a-aGUAGGCU UAA-UUGG-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ----cacag- 3781 ---------C CCAAAA-CGU C-AGGCCGAG G|UGUA|GCG UAU------- ---------G 3841 G-A-AA-GG- GA-AGA--AA -UGGGCUACA UU--CCCUG- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--u uu---)---- ---------- ---------- UAG-GGCAC- 4021 ---------- ------ACGA --AUGGU-GU G-C(------ ---------- ---------- 4081 ---------- ---------- UGAAAC---) G-CA-C--AU CU--UGAAG- -GAGGAUUUA 4141 G-C--AGUAA G-UAGGAA(- guaga-gc-- --)GUCCUGC U-GAAA---- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -UU---GGCU 4261 C~~~~~-~~- ~~~~~~~~-~ -~~~~~~~~~ ~-~~~--~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~- ~~~~~~~~~~ -~~~~~~~~< ~~~~~~~~~- 4381 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4501 ~~~~~~~~~~ ~~~~~~~~~~ ~~>~~~~~~~ ~~~~~~~~-- ~~~~~~~~~~ ~~~~~~~~~~ 4561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~-~ ~~~~~~~~~~ ~~~~~~~~-~ ~~~-~~(~~~ 4621 -~)~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS mt.P.borch 5213 bp RNA RNA 10-AUG-1994 DEFINITION Mitochondrion Pagothenia borchgrevinki.; 12S ribosomal RNA. ACCESSION Z32715 KEYWORDS 12S ribosomal RNA. SOURCE Mitochondrion Pagothenia borchgrevinki. ORGANISM Mitochondrion Pagothenia borchgrevinki. REFERENCE 1 (bases 1 to 373) AUTHORS Bargelloni,L., Ritchie,P., Patarnello,T., Lambert,D., Battaglia,B. and Meyer,A. TITLE antifreeze glycopeptides Mitochondrial and nuclear phylogenies of fishes from Antarctica (suborder Notothenioidei) and the evolution of JOURNAL Unpublished STANDARD No information REFERENCE 2 (bases 1 to 373) AUTHORS Bargelloni,L. TITLE Direct Submission JOURNAL Submitted (25-APR-1994) to the EMBL/GenBank/DDBJ databases. Luca Bargelloni, Biology, University of Padova, Via Trieste 75, Padova, 35121, Italy STANDARD full automatic COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: Z32715 NCBI gi: 530744 BASE COUNT 102 a 96 c 89 g 86 t 4840 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ----|----- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --~~~~~~~~ 661 (~~~-)~-~~ ~|~~~~~-~~ ~~~-~~~~~~ -~-~~~~-~~ |~~~~~~~~~ ~~~~-~~~~~ 721 ~~~~~~~-~~ ~~~~~|~~~~ ~~~~~~~(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------~~~ ~)~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~-~~|~ ~~~~~~~~~~ ~~~~~---~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~~~~ -----)---- 1261 ---------- ---------- --~~--~~~- ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~(~~~~ ~~~------- ---------- ---------- ------)--- 1381 ---~~|---~ ~~~~~--~~~ ~|~~~~~-~~ --|~~~~~~~ (-~~~--)~~ ~~~~~~~~~| 1441 ~~~~------ ---------- ---------- -|-~~~~--( ~~~~-)~~~~ ~~~~~~~~~~ 1501 ~~~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~( ---------- ---~~~~~)- ----~-~~~| 1561 ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~|-~~~ 1921 -~~~-~~~~~ ~~~~~~(-~~ ~~~~~~~~~~ ~~~~-~~)-~ ~~~~~~|--- -~~~~~~~-- 1981 ~~~~~-~~~~ ~~~-~~~~~~ ~~~~~~|~~~ ~~~~~~~~-- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 -~~~~~~~~~ -~~~~~~~~~ ~~~~~~--~~ -----|~~~~ ~~~~~~-~~~ ----~~~~(~ 2341 ~~~~~)~~~- ~~~------~ ~~~~~~~~~~ ~~~------- -----~~~~~ -~~~(-~~~~ 2401 -)~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~---~~~-~ ~~~--~~~~~ ~~~~~-~~~~ 2461 ~-~~~---~~ ~~~~~~~~~( ~~~~~~~~~) ~~~~-~~~~| ~~~~~~~GC- CGUAAA-CAU 2521 U--GAUA-GG |UU|------ ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- --a(auac)a ---accCCUA 2701 U-C|--C|GC C-CGGG-AAC UACAAGC(-- -ACAA--)GC UUG--AAACC CAAAGGAC-U 2761 UG|GCGGUG- CUUUAGA-UC CUCCUAGA|G GAGCCUGU-U |CUAGA--AC CG(AUAACCC 2821 C--------- ----)CGUUC A-ACCUCACC UUUCCUUGUU ---------- ---------- 2881 (-------uu uc-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---CGC CUA-UA|UA- 3121 |CC|-GC--C |G------UC GU-CA|G-CC CAC-|CCC(G --UGA)GGG- -----(cuu- 3181 aa-)------ a-aGUAGGCU UAA-UUGG-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ----cacag- 3781 ---------C CCAAUA-CGU C-AGGCCGAG G|UGUA|GCG UAU------- ---------G 3841 G-A-AA-GG- GA-AGA--AA -UGGGCUACA UU--CCCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--u uu---)---- ---------- ---------- UAG-GGCAC- 4021 ---------- ------ACGA --AUGAU-AU G-C(------ ---------- ---------- 4081 ---------- ---------- UGAAAC---) G-CA-U--AU CU--UGAAG- -GAGGAUUUA 4141 G-C--AGUAA G-CAGGAA(- guaga-gc-- --)GUCCUGC U-GAAA---- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -UU---GGCU 4261 C~~~~~-~~- ~~~~~~~~-~ -~~~~~~~~~ ~-~~~--~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~- ~~~~~~~~~~ -~~~~~~~~< ~~~~~~~~~- 4381 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4501 ~~~~~~~~~~ ~~~~~~~~~~ ~~>~~~~~~~ ~~~~~~~~-- ~~~~~~~~~~ ~~~~~~~~~~ 4561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~-~ ~~~~~~~~~~ ~~~~~~~~-~ ~~~-~~(~~~ 4621 -~)~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS mt.T.eulep 5213 bp RNA RNA 10-AUG-1994 DEFINITION Mitochondrion Trematomus eulepidotus.; 12S ribosomal RNA. ACCESSION Z32717 KEYWORDS 12S ribosomal RNA. SOURCE Mitochondrion Trematomus eulepidotus. ORGANISM Mitochondrion Trematomus eulepidotus. REFERENCE 1 (bases 1 to 373) AUTHORS Battaglia,B. and Meyer,A. Bargelloni,L., Ritchie,P., Patarnello,T., Lambert,D., TITLE Mitochondrial and nuclear phylogenies of fishes from Antarctica (suborder Notothenioidei) and the evolution of antifreeze glycopeptides JOURNAL Unpublished STANDARD No information REFERENCE 2 (bases 1 to 373) AUTHORS Bargelloni,L. TITLE Direct Submission JOURNAL Submitted (25-APR-1994) to the EMBL/GenBank/DDBJ databases. Luca Bargelloni, Biology, University of Padova, Via Trieste 75, Padova, 35121, Italy STANDARD full automatic COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: Z32717 NCBI gi: 529996 BASE COUNT 101 a 95 c 90 g 87 t 4840 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ----|----- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --~~~~~~~~ 661 (~~~-)~-~~ ~|~~~~~-~~ ~~~-~~~~~~ -~-~~~~-~~ |~~~~~~~~~ ~~~~-~~~~~ 721 ~~~~~~~-~~ ~~~~~|~~~~ ~~~~~~~(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------~~~ ~)~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~-~~|~ ~~~~~~~~~~ ~~~~~---~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~~~~ -----)---- 1261 ---------- ---------- --~~--~~~- ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~(~~~~ ~~~------- ---------- ---------- ------)--- 1381 ---~~|---~ ~~~~~--~~~ ~|~~~~~-~~ --|~~~~~~~ (-~~~--)~~ ~~~~~~~~~| 1441 ~~~~------ ---------- ---------- -|-~~~~--( ~~~~-)~~~~ ~~~~~~~~~~ 1501 ~~~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~( ---------- ---~~~~~)- ----~-~~~| 1561 ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~|-~~~ 1921 -~~~-~~~~~ ~~~~~~(-~~ ~~~~~~~~~~ ~~~~-~~)-~ ~~~~~~|--- -~~~~~~~-- 1981 ~~~~~-~~~~ ~~~-~~~~~~ ~~~~~~|~~~ ~~~~~~~~-- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 -~~~~~~~~~ -~~~~~~~~~ ~~~~~~--~~ -----|~~~~ ~~~~~~-~~~ ----~~~~(~ 2341 ~~~~~)~~~- ~~~------~ ~~~~~~~~~~ ~~~------- -----~~~~~ -~~~(-~~~~ 2401 -)~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~---~~~-~ ~~~--~~~~~ ~~~~~-~~~~ 2461 ~-~~~---~~ ~~~~~~~~~( ~~~~~~~~~) ~~~~-~~~~| ~~~~~~~GC- CGUAAA-CAU 2521 U--GAUA-GG |uu|------ ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- --a(auac)a ---accCCUA 2701 U-C|--C|GC C-CGGG-AAC UACAAGC(-- -ACAA--)GC UUG--AAACC CAAAGGAC-U 2761 UG|GCGGUG- CUUUAGA-UC CUCCUAGA|G GAGCCUGU-U |CUAGA--AC CG(AUAACCC 2821 C--------- ----)CGUUC A-ACCUCACC UUUCCUUGUU ---------- ---------- 2881 (-------uu uc-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---CGC CUA-UA|UA- 3121 |CC|-GC--C |G------UC GU-CA|G-CC CAC-|CCC(G --UGA)GGG- -----(cuu- 3181 aa-)------ a-aGUAGGCU UAA-UUGG-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ----cacag- 3781 ---------C CCAAUA-CGU C-AGGCCGAG G|UGUA|GCG UAU------- ---------G 3841 G-A-AA-GG- GA-AGA--AA -UGGGCUACA UU--CCCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--u uu---)---- ---------- ---------- UAG-GGCAC- 4021 ---------- ------ACGA --AUGAU-GU G-C(------ ---------- ---------- 4081 ---------- ---------- UGAAAC---) G-CA-U--GU CU--UGAAG- -GAGGAUUUA 4141 G-C--AGUAA G-CAGAAA(- guaga-gc-- --)GUUCUGC U-GAAA---- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -UU---GGCU 4261 C~~~~~-~~- ~~~~~~~~-~ -~~~~~~~~~ ~-~~~--~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~- ~~~~~~~~~~ -~~~~~~~~< ~~~~~~~~~- 4381 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4501 ~~~~~~~~~~ ~~~~~~~~~~ ~~>~~~~~~~ ~~~~~~~~-- ~~~~~~~~~~ ~~~~~~~~~~ 4561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~-~ ~~~~~~~~~~ ~~~~~~~~-~ ~~~-~~(~~~ 4621 -~)~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS mt.T.hanso 5213 bp RNA RNA 10-AUG-1994 DEFINITION Mitochondrion Trematomus hansoni.; 12S ribosomal RNA. ACCESSION Z32718 KEYWORDS 12S ribosomal RNA. SOURCE Mitochondrion Trematomus hansoni. ORGANISM Mitochondrion Trematomus hansoni. REFERENCE 1 (bases 1 to 373) AUTHORS Bargelloni,L., Ritchie,P., Patarnello,T., Lambert,D., Battaglia,B. and Meyer,A. TITLE antifreeze glycopeptides Mitochondrial and nuclear phylogenies of fishes from Antarctica (suborder Notothenioidei) and the evolution of JOURNAL Unpublished STANDARD No information REFERENCE 2 (bases 1 to 373) AUTHORS Bargelloni,L. TITLE Direct Submission JOURNAL Submitted (25-APR-1994) to the EMBL/GenBank/DDBJ databases. Luca Bargelloni, Biology, University of Padova, Via Trieste 75, Padova, 35121, Italy STANDARD full automatic COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: Z32718 NCBI gi: 529998 BASE COUNT 102 a 94 c 90 g 87 t 4840 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ----|----- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --~~~~~~~~ 661 (~~~-)~-~~ ~|~~~~~-~~ ~~~-~~~~~~ -~-~~~~-~~ |~~~~~~~~~ ~~~~-~~~~~ 721 ~~~~~~~-~~ ~~~~~|~~~~ ~~~~~~~(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------~~~ ~)~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~-~~|~ ~~~~~~~~~~ ~~~~~---~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~~~~ -----)---- 1261 ---------- ---------- --~~--~~~- ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~(~~~~ ~~~------- ---------- ---------- ------)--- 1381 ---~~|---~ ~~~~~--~~~ ~|~~~~~-~~ --|~~~~~~~ (-~~~--)~~ ~~~~~~~~~| 1441 ~~~~------ ---------- ---------- -|-~~~~--( ~~~~-)~~~~ ~~~~~~~~~~ 1501 ~~~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~( ---------- ---~~~~~)- ----~-~~~| 1561 ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~|-~~~ 1921 -~~~-~~~~~ ~~~~~~(-~~ ~~~~~~~~~~ ~~~~-~~)-~ ~~~~~~|--- -~~~~~~~-- 1981 ~~~~~-~~~~ ~~~-~~~~~~ ~~~~~~|~~~ ~~~~~~~~-- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 -~~~~~~~~~ -~~~~~~~~~ ~~~~~~--~~ -----|~~~~ ~~~~~~-~~~ ----~~~~(~ 2341 ~~~~~)~~~- ~~~------~ ~~~~~~~~~~ ~~~------- -----~~~~~ -~~~(-~~~~ 2401 -)~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~---~~~-~ ~~~--~~~~~ ~~~~~-~~~~ 2461 ~-~~~---~~ ~~~~~~~~~( ~~~~~~~~~) ~~~~-~~~~| ~~~~~~~GC- CGUAAA-CAU 2521 U--GAUA-GG |uu|------ ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- --a(auac)a ---accCCUA 2701 U-C|--C|GC C-CGGG-AAC UACAAGC(-- -ACAA--)GC UUG--AAACC CAAAGGAC-U 2761 UG|GCGGUG- CUUUAGA-UC CUCCUAGA|G GAGCCUGU-U |CUAGA--AC CG(AUAACCC 2821 C--------- ----)CGUUC A-ACCUCACC UUUCCUUGUU ---------- ---------- 2881 (-------uu uc-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---CGC CUA-UA|UA- 3121 |CC|-GC--C |G------UC GU-CA|G-CC CAC-|CCC(G --UGA)GGG- -----(cua- 3181 aa-)------ a-aGUAGGCU UAA-UUGG-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ----cauaa- 3781 ---------C CCAAUA-CGU C-AGGCCGAG G|UGUA|GCG UAU------- ---------G 3841 G-A-AG-GG- GA-AGA--AA -UGGGCUACA UU--CCCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--u uu---)---- ---------- ---------- UAG-GGCAC- 4021 ---------- ------ACGA --AUGAU-GU G-C(------ ---------- ---------- 4081 ---------- ---------- UGAAAC---) G-CA-U--AU CU--UGAAG- -GAGGAUUUA 4141 G-C--AGUAA G-CAGGAA(- guaga-gc-- --)GUUCUGC U-GAAA---- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -UU---GGCU 4261 C~~~~~-~~- ~~~~~~~~-~ -~~~~~~~~~ ~-~~~--~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~- ~~~~~~~~~~ -~~~~~~~~< ~~~~~~~~~- 4381 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4501 ~~~~~~~~~~ ~~~~~~~~~~ ~~>~~~~~~~ ~~~~~~~~-- ~~~~~~~~~~ ~~~~~~~~~~ 4561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~-~ ~~~~~~~~~~ ~~~~~~~~-~ ~~~-~~(~~~ 4621 -~)~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS mt.T.nicol 5213 bp RNA RNA 10-AUG-1994 DEFINITION Mitochondrion Trematomus nicolai.; 12S ribosomal RNA. ACCESSION Z32719 KEYWORDS 12S ribosomal RNA. SOURCE Mitochondrion Trematomus nicolai. ORGANISM Mitochondrion Trematomus nicolai. REFERENCE 1 (bases 1 to 373) AUTHORS Bargelloni,L., Ritchie,P., Patarnello,T., Lambert,D., Battaglia,B. and Meyer,A. TITLE Mitochondrial and nuclear phylogenies of fishes from Antarctica (suborder Notothenioidei) and the evolution of antifreeze glycopeptides JOURNAL Unpublished STANDARD No information REFERENCE 2 (bases 1 to 373) AUTHORS Bargelloni,L. TITLE Direct Submission JOURNAL Submitted (25-APR-1994) to the EMBL/GenBank/DDBJ databases. Luca Bargelloni, Biology, University of Padova, Via Trieste 75, Padova, 35121, Italy STANDARD full automatic COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: Z32719 NCBI gi: 530000 BASE COUNT 101 a 93 c 90 g 89 t 4840 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ----|----- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --~~~~~~~~ 661 (~~~-)~-~~ ~|~~~~~-~~ ~~~-~~~~~~ -~-~~~~-~~ |~~~~~~~~~ ~~~~-~~~~~ 721 ~~~~~~~-~~ ~~~~~|~~~~ ~~~~~~~(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------~~~ ~)~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~-~~|~ ~~~~~~~~~~ ~~~~~---~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~~~~ -----)---- 1261 ---------- ---------- --~~--~~~- ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~(~~~~ ~~~------- ---------- ---------- ------)--- 1381 ---~~|---~ ~~~~~--~~~ ~|~~~~~-~~ --|~~~~~~~ (-~~~--)~~ ~~~~~~~~~| 1441 ~~~~------ ---------- ---------- -|-~~~~--( ~~~~-)~~~~ ~~~~~~~~~~ 1501 ~~~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~( ---------- ---~~~~~)- ----~-~~~| 1561 ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~|-~~~ 1921 -~~~-~~~~~ ~~~~~~(-~~ ~~~~~~~~~~ ~~~~-~~)-~ ~~~~~~|--- -~~~~~~~-- 1981 ~~~~~-~~~~ ~~~-~~~~~~ ~~~~~~|~~~ ~~~~~~~~-- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 -~~~~~~~~~ -~~~~~~~~~ ~~~~~~--~~ -----|~~~~ ~~~~~~-~~~ ----~~~~(~ 2341 ~~~~~)~~~- ~~~------~ ~~~~~~~~~~ ~~~------- -----~~~~~ -~~~(-~~~~ 2401 -)~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~---~~~-~ ~~~--~~~~~ ~~~~~-~~~~ 2461 ~-~~~---~~ ~~~~~~~~~( ~~~~~~~~~) ~~~~-~~~~| ~~~~~~~GC- CGUAAA-CAU 2521 U--GAUA-GG |UU|------ ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- --a(auac)a ---accCCUA 2701 U-C|--C|GC C-CGGG-AAC UACAAGC(-- -ACAA--)GC UUG--AAACC CAAAGGAC-U 2761 UG|GCGGUG- CUUUAGA-UC CUCCUAGA|G GAGCCUGU-U |CUAGA--AC CG(AUAACCC 2821 C--------- ----)CGUUC A-ACCUCACC UUUCCUUGUU ---------- ---------- 2881 (-------uu uc-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---CGC CUA-UA|UA- 3121 |CC|-GC--C |G------UC GU-CA|G-CC CAC-|CCC(G --UGA)GGG- -----(uuu- 3181 aa-)------ a-aGUAGGCU UAA-UUGG-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ----cacag- 3781 ---------C CCAAUA-CGU C-AGGCCGAG G|UGUA|GCG UAU------- ---------G 3841 G-A-AA-GG- GA-AGA--AA -UGGGCUACA UU--CCCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--u uu---)---- ---------- ---------- UAG-GGUAC- 4021 ---------- ------ACGA --AUGAU-AU G-C(------ ---------- ---------- 4081 ---------- ---------- UGAAAC---) G-CA-U--GU CU--UGAAG- -GAGGAUUUA 4141 G-C--AGUAA G-CAGGAA(- guaga-gc-- --)GUUCUGC U-GAAA---- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -UU---GGCU 4261 C~~~~~-~~- ~~~~~~~~-~ -~~~~~~~~~ ~-~~~--~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~- ~~~~~~~~~~ -~~~~~~~~< ~~~~~~~~~- 4381 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4501 ~~~~~~~~~~ ~~~~~~~~~~ ~~>~~~~~~~ ~~~~~~~~-- ~~~~~~~~~~ ~~~~~~~~~~ 4561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~-~ ~~~~~~~~~~ ~~~~~~~~-~ ~~~-~~(~~~ 4621 -~)~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS mt.T.penne 5213 bp RNA RNA 10-AUG-1994 DEFINITION Mitochondrion Trematomus pennellii.; 12S ribosomal RNA. ACCESSION Z32720 KEYWORDS 12S ribosomal RNA. SOURCE Mitochondrion Trematomus pennellii. ORGANISM Mitochondrion Trematomus pennellii. REFERENCE 1 (bases 1 to 373) AUTHORS Bargelloni,L., Ritchie,P., Patarnello,T., Lambert,D., Battaglia,B. and Meyer,A. TITLE antifreeze glycopeptides Mitochondrial and nuclear phylogenies of fishes from Antarctica (suborder Notothenioidei) and the evolution of JOURNAL Unpublished STANDARD No information REFERENCE 2 (bases 1 to 373) AUTHORS Bargelloni,L. TITLE Direct Submission JOURNAL Submitted (25-APR-1994) to the EMBL/GenBank/DDBJ databases. Luca Bargelloni, Biology, University of Padova, Via Trieste 75, Padova, 35121, Italy STANDARD full automatic COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: Z32720 NCBI gi: 530002 BASE COUNT 100 a 96 c 90 g 87 t 4840 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ----|----- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --~~~~~~~~ 661 (~~~-)~-~~ ~|~~~~~-~~ ~~~-~~~~~~ -~-~~~~-~~ |~~~~~~~~~ ~~~~-~~~~~ 721 ~~~~~~~-~~ ~~~~~|~~~~ ~~~~~~~(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------~~~ ~)~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~-~~|~ ~~~~~~~~~~ ~~~~~---~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~~~~ -----)---- 1261 ---------- ---------- --~~--~~~- ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~(~~~~ ~~~------- ---------- ---------- ------)--- 1381 ---~~|---~ ~~~~~--~~~ ~|~~~~~-~~ --|~~~~~~~ (-~~~--)~~ ~~~~~~~~~| 1441 ~~~~------ ---------- ---------- -|-~~~~--( ~~~~-)~~~~ ~~~~~~~~~~ 1501 ~~~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~( ---------- ---~~~~~)- ----~-~~~| 1561 ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~|-~~~ 1921 -~~~-~~~~~ ~~~~~~(-~~ ~~~~~~~~~~ ~~~~-~~)-~ ~~~~~~|--- -~~~~~~~-- 1981 ~~~~~-~~~~ ~~~-~~~~~~ ~~~~~~|~~~ ~~~~~~~~-- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 -~~~~~~~~~ -~~~~~~~~~ ~~~~~~--~~ -----|~~~~ ~~~~~~-~~~ ----~~~~(~ 2341 ~~~~~)~~~- ~~~------~ ~~~~~~~~~~ ~~~------- -----~~~~~ -~~~(-~~~~ 2401 -)~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~---~~~-~ ~~~--~~~~~ ~~~~~-~~~~ 2461 ~-~~~---~~ ~~~~~~~~~( ~~~~~~~~~) ~~~~-~~~~| ~~~~~~~GC- CGUAAA-CAU 2521 U--GAUA-GG |uu|------ ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- --a(auac)a ---accCCUA 2701 U-C|--C|GC C-CGGG-UAC UACAAGC(-- -ACAA--)GC UUG--AAACC CAAAGGAC-U 2761 UG|GCGGUG- CUUUAGA-UC CUCCUAGA|G GAGCCUGU-U |CUAGA--AC CG(AUAACCC 2821 C--------- ----)CGUUC A-ACCUCACC UUUCCUUGUU ---------- ---------- 2881 (-------uu uc-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---CGC CUA-UA|UA- 3121 |CC|-GC--C |G------UC GU-CA|G-CC CAC-|CCC(G --UGA)GGG- -----(cua- 3181 aa-)------ a-aGUAGGCU UAA-UUGG-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ----cacag- 3781 ---------C CCAAUA-CGU C-AGGCCGAG G|UGUA|GCG UAU------- ---------G 3841 G-A-AA-GG- GA-AGA--AA -UGGGCUACA UU--CCCUG- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--u uu---)---- ---------- ---------- UAG-GGCAC- 4021 ---------- ------ACGA --AUGCU-AU G-C(------ ---------- ---------- 4081 ---------- ---------- UGAAAC---) G-CA-U--AU CU--UGAAG- -GAGGAUUUA 4141 G-C--AGUAA G-CAGGAA(- guaga-gc-- --)GUUCUGC U-GAAA---- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -UU---GGCU 4261 C~~~~~-~~- ~~~~~~~~-~ -~~~~~~~~~ ~-~~~--~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~- ~~~~~~~~~~ -~~~~~~~~< ~~~~~~~~~- 4381 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4501 ~~~~~~~~~~ ~~~~~~~~~~ ~~>~~~~~~~ ~~~~~~~~-- ~~~~~~~~~~ ~~~~~~~~~~ 4561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~-~ ~~~~~~~~~~ ~~~~~~~~-~ ~~~-~~(~~~ 4621 -~)~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS mt.L.dearb 5213 bp RNA RNA 10-AUG-1994 DEFINITION Mitochondrion Lycodichthys dearborni.; 12S ribosomal RNA. ACCESSION Z32711 KEYWORDS 12S ribosomal RNA. SOURCE Mitochondrion Lycodichthys dearborni. ORGANISM Mitochondrion Lycodichthys dearborni. REFERENCE 1 (bases 1 to 371) AUTHORS Battaglia,B. and Meyer,A. Bargelloni,L., Ritchie,P., Patarnello,T., Lambert,D., TITLE antifreeze glycopeptides Mitochondrial and nuclear phylogenies of fishes from Antarctica (suborder Notothenioidei) and the evolution of JOURNAL Unpublished STANDARD No information REFERENCE 2 (bases 1 to 371) AUTHORS Bargelloni,L. TITLE Direct Submission JOURNAL Submitted (25-APR-1994) to the EMBL/GenBank/DDBJ databases. Luca Bargelloni, Biology, University of Padova, Via Trieste 75, Padova, 35121, Italy STANDARD full automatic COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: Z32711 NCBI gi: 530405 BASE COUNT 100 a 99 c 91 g 81 t 4842 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ----|----- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --~~~~~~~~ 661 (~~~-)~-~~ ~|~~~~~-~~ ~~~-~~~~~~ -~-~~~~-~~ |~~~~~~~~~ ~~~~-~~~~~ 721 ~~~~~~~-~~ ~~~~~|~~~~ ~~~~~~~(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------~~~ ~)~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~-~~|~ ~~~~~~~~~~ ~~~~~---~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~~~~ -----)---- 1261 ---------- ---------- --~~--~~~- ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~(~~~~ ~~~------- ---------- ---------- ------)--- 1381 ---~~|---~ ~~~~~--~~~ ~|~~~~~-~~ --|~~~~~~~ (-~~~--)~~ ~~~~~~~~~| 1441 ~~~~------ ---------- ---------- -|-~~~~--( ~~~~-)~~~~ ~~~~~~~~~~ 1501 ~~~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~( ---------- ---~~~~~)- ----~-~~~| 1561 ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~|-~~~ 1921 -~~~-~~~~~ ~~~~~~(-~~ ~~~~~~~~~~ ~~~~-~~)-~ ~~~~~~|--- -~~~~~~~-- 1981 ~~~~~-~~~~ ~~~-~~~~~~ ~~~~~~|~~~ ~~~~~~~~-- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 -~~~~~~~~~ -~~~~~~~~~ ~~~~~~--~~ -----|~~~~ ~~~~~~-~~~ ----~~~~(~ 2341 ~~~~~)~~~- ~~~------~ ~~~~~~~~~~ ~~~------- -----~~~~~ -~~~(-~~~~ 2401 -)~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~---~~~-~ ~~~--~~~~~ ~~~~~-~~~~ 2461 ~-~~~---~~ ~~~~~~~~~( ~~~~~~~~~) ~~~~-~~~~| ~~~~~~~~C- CCUAAA-CAU 2521 U--GAUA-GU |AC|------ ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- --c(ccac)a ---cccACUA 2701 U-C|--C|GC C-UGGG-GAC UACGAGC(-- -AGCA--)GC UUA--AAACC CAAAGGAC-U 2761 UG|GCGGUG- CUUUAAA-CC CACCUAGA|G GAGCCUGU-U |CUAGA--AC CG(AUAGCCC 2821 C--------- ----)CGUUC A-ACCUCACC UUUCCUUGUU ---------- ---------- 2881 (-------uu ac-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---CGC CUA-UA|UA- 3121 |CC|-GC--C |G------UC GU-CA|G-CU UAC-|CCU(G --UGA)AGG- -----(uuu- 3181 aa-)------ u-aGUAAGCA AAA-CUGG-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ----cuugg- 3781 ---------C CCAGAA-CGU C-AGGUCGAG G|UGUA|GCG CAU------- ---------G 3841 G-G-AG-GG- GA-AGA--AA -UGGGCUACA UU--CGCUG- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--c ug---)---- ---------- ---------- CAG-CGAAU- 4021 ---------- ------ACGG --ACGAU-GC A-C(------ ---------- ---------- 4081 ---------- ---------- UGAAAC---) G-UU-C--AU C---UGAAG- -GAGGAUUUA 4141 G-C--AGUAA G-CAGAAA(- auaga-gu-- --)GUUCCGC U-GAAA---- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -UU---GGCC 4261 C~~~~~-~~- ~~~~~~~~-~ -~~~~~~~~~ ~-~~~--~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~- ~~~~~~~~~~ -~~~~~~~~< ~~~~~~~~~- 4381 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4501 ~~~~~~~~~~ ~~~~~~~~~~ ~~>~~~~~~~ ~~~~~~~~-- ~~~~~~~~~~ ~~~~~~~~~~ 4561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~-~ ~~~~~~~~~~ ~~~~~~~~-~ ~~~-~~(~~~ 4621 -~)~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS mt.P.brach 5213 bp RNA RNA 10-AUG-1994 DEFINITION Mitochondrion Pachycara brachycephalum.; 12S ribosomal RNA. ACCESSION Z32713 KEYWORDS 12S ribosomal RNA. SOURCE Mitochondrion Pachycara brachycephalum. ORGANISM Mitochondrion Pachycara brachycephalum. REFERENCE 1 (bases 1 to 371) AUTHORS Bargelloni,L., Ritchie,P., Patarnello,T., Lambert,D., Battaglia,B. and Meyer,A. TITLE Antarctica (suborder Notothenioidei) and the evolution of antifreeze glycopeptides Mitochondrial and nuclear phylogenies of fishes from JOURNAL Unpublished STANDARD No information REFERENCE 2 (bases 1 to 371) AUTHORS Bargelloni,L. TITLE Direct Submission JOURNAL Submitted (25-APR-1994) to the EMBL/GenBank/DDBJ databases. Luca Bargelloni, Biology, University of Padova, Via Trieste 75, Padova, 35121, Italy STANDARD full automatic COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: Z32713 NCBI gi: 530743 BASE COUNT 101 a 101 c 89 g 80 t 4842 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --~~~~~~~~ 661 (~~~-)~-~~ ~|~~~~~-~~ ~~~-~~~~~~ -~-~~~~-~~ |~~~~~~~~~ ~~~~-~~~~~ 721 ~~~~~~~-~~ ~~~~~|~~~~ ~~~~~~~(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------~~~ ~)~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~-~~|~ ~~~~~~~~~~ ~~~~~---~~ ~|~~~~~~~~ -~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(------- -----)---- 1261 ---------- ---------- --~~~~~~~- ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~(~~~~ ~~~------- ---------- ---------- ------)--- 1381 ---~~|---~ ~~~~~--~~~ ~|~~~~~-~~ --|~~~~~~~ (-~~~--)~~ ~~~~~~~~~| 1441 ~~~~------ ---------- ---------- -|-~~~~--( ~~~~-)~~~~ ~~~~~~~~-~ 1501 ~~~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~( ---------- ---~~~~~)- ----~-~~~| 1561 ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~|-~~~ 1921 -~~~-~~~~~ ~~~~~~(-~~ ~~~~~~~~~~ ~~~~-~~)-~ ~~~~~~|--- -~~~~~~~-- 1981 ~~~~~-~~~~ ~~~-~~~~~~ ~~~~~~|~~~ ~~~~~~~~-- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 -~~~~~~~~~ -~~~~~~~~~ ~~~~~~--~~ -----|~~~~ ~~~~~~-~~~ ----~~~~(~ 2341 ~~~~~)~~~- ~~~------~ ~~~~~~~~~~ ~~~------- -----~~~~~ -~~~(-~~~~ 2401 -)~~|~---- ----~~~~~~ ~~~~~~~~~~ ~~---~~~-~ ~~~--~~~~~ ~~~~~-~~~~ 2461 ~-~~~---~~ ~~~~~~~~~( ~~~~~~~~~) ~~~~-~~~~| -~~~~-~~C- CCUAAA-CAU 2521 U--GAUA-GU |AC|------ ------(--- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---)------ ---------- --c(ccac)a cc--C-ACUA 2701 U-C|--C|GC C-UGGG-AAC UACGAGC(-- -A-gca-)GC UUA--AAACC CAAAGGAC-U 2761 UG|GCGGUG- CUUUAAA-CC CACCUAGA|G GAGCCUGU-U |CUAGA--AC CG(AUAACCC 2821 C--------- ----)CGUUC A-ACCUCACC UUUCCUUGUU ---------- ---------- 2881 (-------uu ac-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---CGC CUA-UA|UA- 3121 |CC|-GC--C |G------UC GU-CA|G-CU UAC-|CCU(G --UGA)AGG- -----(uuu- 3181 aau)------ --AGUAAGCU AAA-CUGG-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ----cuugg- 3781 ---------C CCAGAA-CGU C-AGGUCGAG G|UGUA|GCG CAU------- ---------G 3841 G-G-AG-GGG -A-AGA--AA -UGGGCUACA UU--CGCUG- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--c ug---)---- ---------- ---------- CAG-CGaau- 4021 ---------- ------ACGG --ACGAU-GC A-C(------ ---------- ---------- 4081 ---------- ---------- UGAAA--C-) G-UC-C--AU -C--UGAAG- -GAGGAUUUA 4141 G-C--AGUAA G-CAGAAA(- aua-gagu-- --)GUUCCGC U-gaa----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -ACU--GGCC 4261 C~~~~~-~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~-~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~- ~~~~~~~~~~ -~~~~~~~~< ~~~~~~~~~- 4381 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4501 ~~~~~~~~~~ ~~~~~~~~~~ ~~>~~~~~~~ ~~~~~~~~-- ~~~~~~~~~~ ~~~~~~~~~~ 4561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~-~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~-~~(~~~ 4621 -~)~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS mt.P.oliva 5213 bp RNA RNA 04-MAR-1997 DEFINITION Mitochondrion Paralichthys olivaceus.; 16S ribosomal RNA; tRNA, Val; 12S ribosomal RNA; tRNA, Phe; tRNA, Pro; tRNA, Thr; Cyt-b; cytochrome b. ACCESSION AB0006 7 KEYWORDS 16S ribosomal RNA; tRNA, Val; 12S ribosomal RNA; tRNA, Phe; tRNA, Pro; tRNA, Thr; Cyt-b; cytochrome b. SOURCE Mitochondrion Paralichthys olivaceus. ORGANISM Mitochondrion Paralichthys olivaceus. REFERENCE 1 (bases 1 to 3576) AUTHORS Saitoh,K. TITLE Direct Submission JOURNAL Kenji Saitoh, Tohoku National Fisheries Research Institute, Hachinohe Branch; Shimo-mekurakubo 25-259, Same, Hachinohe, Aomori 031, Japan (Tel:178-33-1500, Fax:178-34-1357) Submitted (24-JAN-1997) to the DDBJ/EMBL/GenBank databases. STANDARD No information REFERENCE 2 (bases 1 to 3576) AUTHORS Saitoh,K. TITLE Characterization of cloned Japanese flounder mitochondrial DNA fragments JOURNAL Unpublished (1997) STANDARD No information REFERENCE 3 (sites) AUTHORS Saitoh,K. TITLE Length variable mitochondrial control region from the Japanese flounder JOURNAL Unpublished (1997) STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: AB000667 BASE COUNT 295 a 247 c 219 g 188 t 4264 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --caaAGGCU 661 (UGG-)U-CC U|GACUU-UA CUG-UCGACU -C-UAAC-UA |GA-CU--UA -CAC-A-UGC 721 -AAGu----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------auc c)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------|- gCCCCCCUGU GAGAA---UG C|CCA-Uaac --gc-cc--- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- --(-ugcuc- -----)---- 1261 ---------- ---------- --gg--gaa- --cAAGGAGC |--------- UGGCAUCA-- 1321 -GGCACAGA- -----(caua ---------- ---------- ---------- ------)--- 1381 --UCU|---G GCCCA--CGA C|GCCUU-GC --|------- (-uua--)-- -------GC| 1441 CACA------ ---------- ---------- -|-CCCU--( CAAG-)--GG AAcu---C-A 1501 GCA|GUG-AU AAAUAUUAAG C-CAUAAGU( ---------- ----GCAA)A CUUGA-CUU| 1561 A|-GUUA-A- GG-UUA---a ga-------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- GGGCC|-GGU 1921 -AAA-A---C UCGU-G(-CC AGCCACC-GC -GGU-UA)-U ACGAGA|--- -GGC-CCG-- 1981 AGUUG-ACAG A--------c agCGGC|GUA AAGGGUGGUU -A-ggg---- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 ------g--- -guugaccaa acuaag--gc -----|CGAA CGCUCC-CAA ----AGCU(G 2341 UUAUA)AGCA CC------C- GGGA-GUAUG AAA------- ----cccaau -UAC(-GAAA 2401 -)GU|a---- ----gccuua u---ucac-- ---------- ccu-gaacCC ACGAA-AGCU 2461 A-AGG---AA CAAACUGGG( AUUAGAUAC) CCCA-CUAU| -GCUU-AGC- CCUAAA-CAU 2521 C--GAUU-GU |AC|------ ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- --a(uuac)a c--uc-aacA 2701 U-C|--C|GC C-CGGG-AAU UACAAAC(-- -GUUA--)GU UUA--AAACC CAAAGGAC-U 2761 UG|GCGGUG- CUUAACA-UC CACCUAGA|G GAGCCUGU-U |CUAGA--AC CG(AUAACCC 2821 C--------- ----)CGUUA A-ACCUCACC CUCUCUUGCC ---------- ---------- 2881 (-------uc au-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---CGC CUA-UA|UA- 3121 |CC|-AC--C |G------UC GU-CA|G-CU UAC-|CCU(G --UGA)AGG- -----(cuu- 3181 aa-)------ c-AGUAAGCA AAG-UUGG-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ----caaag- 3781 ---------C CCAAAA-CGU C-AGGUCGAG G|UGUA|GUG AAU------- ---------G 3841 A-G-GG-GG- GA-AGA--AA -UGGGCUACA UU--UGCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(-aa gc---)---- ---------- ---------- UAG-CAAA-- 4021 ---------- -----UACGA --AUAAU-GC A-U(------ ---------- ---------- 4081 ---------- ---------- UGAAAC---) A-UG-C--AA -U--UGAAG- -GAGGAUUUA 4141 G-U--AGUAA G-CAGGGA(- auaga-gu-- --)GUCCCGC U-GAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -AUU--GGCC 4261 CUAAAG-CG- CGCACACA-C -CGCCCGUCA C-CCU--CCC CA-------- ---------- 4321 ---------- ---------- ---------- ---------- ---------< -agcccuac- 4381 aagac-uaaa cuaacuaaaa ccaacaaccc gcga------ ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- ---------A GGGG-AGG-A AAGUCGUAAC AUGGUAAG-U GUA-CC(GGA 4621 -A)GGU-GC- ACUUGGAAAA AU-------| ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- --------|| ||| // LOCUS (17)-OSTAR 5213 bp RNA RNA 25-JAN-1994 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: DIVIDER BASE COUNT 0 a 0 c 0 g 0 t 5213 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ----|..... .......... .......... 541 .......... .......... .......... .......... .......... .......... 601 .......... .......... .......... .......... .......... .......... 661 .......-.. .......... .......... ..-....... |......... ....-..... 721 .......-.. .....|.... ........-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- ------.... .......... 841 .......... .......... .......... .......... .......... .......... 901 .......... .......... .......... .......... .......... .......... 961 .....-..|. .......... .......... .|........ -......... .....-.... 1021 .......... ....---... ..-..---.. .......... .......... .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .......... .......... .......... .......... .......... 1201 .......... .......... .......... .......... .......... .......... 1261 .......... .......... .........- .......... ..----.... ........-- 1321 .......... .......... .......... .......... .......... .......... 1381 ......---. .......... .......-.. .......... .......... .......... 1441 .......... ........-. ..-....... .......... .......... ........-. 1501 ...|...-.. .......... .......... .......... .......... .....-...| 1561 .......... .......... .......... .......... .--....... .......... 1621 .......... .......... .......... .......... .......... .......... 1681 .......... .......... .......... .......... .......... .......... 1741 .......... .......... .......... .......... .......... .......... 1801 .......... .......... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .......... .......... 1921 .......... .......-.. .......... -.......-. .......... .......... 1981 .....-.... ...--..... .......... .......... -......... .......... 2041 .......... .....----. .......... .......... .....----- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- --------.. .......... .......... .......... 2221 .......... .......... .......... .......... ........|. .......-.. 2281 .......... -......... ......--.. .-........ .......... ---....... 2341 .......... ...-...... ....-..... .......... .......... .......... 2401 ....|..... .......... .......... .......... .......... .....-.... 2461 .....--... .......... .......... .......... .......... .......... 2521 .--....-.. |......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... .......... 2701 .-..-..... .......... .......... .......... .......... .......... 2761 ..|....... .......... ........|. ........-. |......... .......... 2821 .--------- ----...... .-........ .......... .......... .......... 2881 .....---.. ..-....... .......... .......... .......... .......... 2941 .......... .......... .......... .......... .......... .......... 3001 .......... .......... .......... .......... .......... .......... 3061 .......... .......... .......... .......... .--....... ...-.....- 3121 .......--. |......... .......-.. .......... .-........ .........- 3181 .......... .-........ .......... .......... .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .......... .......... .......... 3361 .......... .......... .......... .......... .....--... .......... 3421 .......... .......... .......... .......... .......... .......... 3481 .......... ........-- --........ .......... .......... .......... 3541 .......... .......... .......... .......... .......... .......... 3601 .......... .......... .......... .......... .......... .......... 3661 .......... .......... .......... .......... .......... .......... 3721 .......... .......... .......... .......... .....-.... .......... 3781 .......... .......... .......... ......|... ...------- -------... 3841 ...-..-... ..-....... .......... ..-....... ......-... ..--...... 3901 .......... .......... .......... .......... .......... .......... 3961 .......... .......... ...-...... .......... .......... .......... 4021 ......---. .......... .-........ .-........ .......... .......... 4081 .......... .......... ......-... .......... .........- .......... 4141 .-.-...... .......... .......... .......... .-........ .......... 4201 .......... .......... .......... .......... .......... .......... 4261 .......... .......... .......... .-........ ...-...... .......... 4321 .......... ......-... .........- .......... -......... .........- 4381 .....-.... .......... ........-- ....-..... .......... .......... 4441 .......... .......... .......... .......... .......... .......... 4501 .......... .......... ...--..... ........-- .......... .......... 4561 .......... .......... ........-. .......... ........-. ...-...... 4621 -.....-... .......... .......... .......... .......... .......... 4681 .......... .......... .......... .......... .......... .......... 4741 .......... .......... .......... .......... .......... .......... 4801 .......... .......... .......... .......... .......... .......... 4861 .......... .......... .......... .......... .......... .......... 4921 .......... .......... .......... .......... .......... .......... 4981 .......... .......... .......... .......... .......... .......... 5041 .......... .......... .......... .......... .......... .......... 5101 .......... .......... .......... .......... .......... .......... 5161 .......... .......... .......... .......... ........|| ||| // LOCUS (18)-CYPRI 5213 bp RNA RNA 25-JAN-1994 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: DIVIDER BASE COUNT 0 a 0 c 0 g 0 t 5213 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ----|..... .......... .......... 541 .......... .......... .......... .......... .......... .......... 601 .......... .......... .......... .......... .......... .......... 661 .......-.. .......... .......... ..-....... |......... ....-..... 721 .......-.. .....|.... ........-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- ------.... .......... 841 .......... .......... .......... .......... .......... .......... 901 .......... .......... .......... .......... .......... .......... 961 .....-..|. .......... .......... .|........ -......... .....-.... 1021 .......... ....---... ..-..---.. .......... .......... .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .......... .......... .......... .......... .......... 1201 .......... .......... .......... .......... .......... .......... 1261 .......... .......... .........- .......... ..----.... ........-- 1321 .......... .......... .......... .......... .......... .......... 1381 ......---. .......... .......-.. .......... .......... .......... 1441 .......... ........-. ..-....... .......... .......... ........-. 1501 ...|...-.. .......... .......... .......... .......... .....-...| 1561 .......... .......... .......... .......... .--....... .......... 1621 .......... .......... .......... .......... .......... .......... 1681 .......... .......... .......... .......... .......... .......... 1741 .......... .......... .......... .......... .......... .......... 1801 .......... .......... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .......... .......... 1921 .......... .......-.. .......... -.......-. .......... .......... 1981 .....-.... ...--..... .......... .......... -......... .......... 2041 .......... .....----. .......... .......... .....----- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- --------.. .......... .......... .......... 2221 .......... .......... .......... .......... ........|. .......-.. 2281 .......... -......... ......--.. .-........ .......... ---....... 2341 .......... ...-...... ....-..... .......... .......... .......... 2401 ....|..... .......... .......... .......... .......... .....-.... 2461 .....--... .......... .......... .......... .......... .......... 2521 .--....-.. |......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... .......... 2701 .-..-..... .......... .......... .......... .......... .......... 2761 ..|....... .......... ........|. ........-. |......... .......... 2821 .--------- ----...... .-........ .......... .......... .......... 2881 .....---.. ..-....... .......... .......... .......... .......... 2941 .......... .......... .......... .......... .......... .......... 3001 .......... .......... .......... .......... .......... .......... 3061 .......... .......... .......... .......... .--....... ...-.....- 3121 .......--. |......... .......-.. .......... .-........ .........- 3181 .......... .-........ .......... .......... .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .......... .......... .......... 3361 .......... .......... .......... .......... .....--... .......... 3421 .......... .......... .......... .......... .......... .......... 3481 .......... ........-- --........ .......... .......... .......... 3541 .......... .......... .......... .......... .......... .......... 3601 .......... .......... .......... .......... .......... .......... 3661 .......... .......... .......... .......... .......... .......... 3721 .......... .......... .......... .......... .....-.... .......... 3781 .......... .......... .......... ......|... ...------- -------... 3841 ...-..-... ..-....... .......... ..-....... ......-... ..--...... 3901 .......... .......... .......... .......... .......... .......... 3961 .......... .......... ...-...... .......... .......... .......... 4021 ......---. .......... .-........ .-........ .......... .......... 4081 .......... .......... ......-... .......... .........- .......... 4141 .-.-...... .......... .......... .......... .-........ .......... 4201 .......... .......... .......... .......... .......... .......... 4261 .......... .......... .......... .-........ ...-...... .......... 4321 .......... ......-... .........- .......... -......... .........- 4381 .....-.... .......... ........-- ....-..... .......... .......... 4441 .......... .......... .......... .......... .......... .......... 4501 .......... .......... ...--..... ........-- .......... .......... 4561 .......... .......... ........-. .......... ........-. ...-...... 4621 -.....-... .......... .......... .......... .......... .......... 4681 .......... .......... .......... .......... .......... .......... 4741 .......... .......... .......... .......... .......... .......... 4801 .......... .......... .......... .......... .......... .......... 4861 .......... .......... .......... .......... .......... .......... 4921 .......... .......... .......... .......... .......... .......... 4981 .......... .......... .......... .......... .......... .......... 5041 .......... .......... .......... .......... .......... .......... 5101 .......... .......... .......... .......... .......... .......... 5161 .......... .......... .......... .......... ........|| ||| // LOCUS (19)-CYPRI 5213 bp RNA RNA 25-JAN-1994 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: DIVIDER BASE COUNT 0 a 0 c 0 g 0 t 5213 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ----|..... .......... .......... 541 .......... .......... .......... .......... .......... .......... 601 .......... .......... .......... .......... .......... .......... 661 .......-.. .......... .......... ..-....... |......... ....-..... 721 .......-.. .....|.... ........-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- ------.... .......... 841 .......... .......... .......... .......... .......... .......... 901 .......... .......... .......... .......... .......... .......... 961 .....-..|. .......... .......... .|........ -......... .....-.... 1021 .......... ....---... ..-..---.. .......... .......... .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .......... .......... .......... .......... .......... 1201 .......... .......... .......... .......... .......... .......... 1261 .......... .......... .........- .......... ..----.... ........-- 1321 .......... .......... .......... .......... .......... .......... 1381 ......---. .......... .......-.. .......... .......... .......... 1441 .......... ........-. ..-....... .......... .......... ........-. 1501 ...|...-.. .......... .......... .......... .......... .....-...| 1561 .......... .......... .......... .......... .--....... .......... 1621 .......... .......... .......... .......... .......... .......... 1681 .......... .......... .......... .......... .......... .......... 1741 .......... .......... .......... .......... .......... .......... 1801 .......... .......... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .......... .......... 1921 .......... .......-.. .......... -.......-. .......... .......... 1981 .....-.... ...--..... .......... .......... -......... .......... 2041 .......... .....----. .......... .......... .....----- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- --------.. .......... .......... .......... 2221 .......... .......... .......... .......... ........|. .......-.. 2281 .......... -......... ......--.. .-........ .......... ---....... 2341 .......... ...-...... ....-..... .......... .......... .......... 2401 ....|..... .......... .......... .......... .......... .....-.... 2461 .....--... .......... .......... .......... .......... .......... 2521 .--....-.. |......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... .......... 2701 .-..-..... .......... .......... .......... .......... .......... 2761 ..|....... .......... ........|. ........-. |......... .......... 2821 .--------- ----...... .-........ .......... .......... .......... 2881 .....---.. ..-....... .......... .......... .......... .......... 2941 .......... .......... .......... .......... .......... .......... 3001 .......... .......... .......... .......... .......... .......... 3061 .......... .......... .......... .......... .--....... ...-.....- 3121 .......--. |......... .......-.. .......... .-........ .........- 3181 .......... .-........ .......... .......... .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .......... .......... .......... 3361 .......... .......... .......... .......... .....--... .......... 3421 .......... .......... .......... .......... .......... .......... 3481 .......... ........-- --........ .......... .......... .......... 3541 .......... .......... .......... .......... .......... .......... 3601 .......... .......... .......... .......... .......... .......... 3661 .......... .......... .......... .......... .......... .......... 3721 .......... .......... .......... .......... .....-.... .......... 3781 .......... .......... .......... ......|... ...------- -------... 3841 ...-..-... ..-....... .......... ..-....... ......-... ..--...... 3901 .......... .......... .......... .......... .......... .......... 3961 .......... .......... ...-...... .......... .......... .......... 4021 ......---. .......... .-........ .-........ .......... .......... 4081 .......... .......... ......-... .......... .........- .......... 4141 .-.-...... .......... .......... .......... .-........ .......... 4201 .......... .......... .......... .......... .......... .......... 4261 .......... .......... .......... .-........ ...-...... .......... 4321 .......... ......-... .........- .......... -......... .........- 4381 .....-.... .......... ........-- ....-..... .......... .......... 4441 .......... .......... .......... .......... .......... .......... 4501 .......... .......... ...--..... ........-- .......... .......... 4561 .......... .......... ........-. .......... ........-. ...-...... 4621 -.....-... .......... .......... .......... .......... .......... 4681 .......... .......... .......... .......... .......... .......... 4741 .......... .......... .......... .......... .......... .......... 4801 .......... .......... .......... .......... .......... .......... 4861 .......... .......... .......... .......... .......... .......... 4921 .......... .......... .......... .......... .......... .......... 4981 .......... .......... .......... .......... .......... .......... 5041 .......... .......... .......... .......... .......... .......... 5101 .......... .......... .......... .......... .......... .......... 5161 .......... .......... .......... .......... ........|| ||| // LOCUS (20)-CYPRI 5213 bp RNA RNA 25-JAN-1994 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: DIVIDER BASE COUNT 0 a 0 c 0 g 0 t 5213 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ----|..... .......... .......... 541 .......... .......... .......... .......... .......... .......... 601 .......... .......... .......... .......... .......... .......... 661 .......-.. .......... .......... ..-....... |......... ....-..... 721 .......-.. .....|.... ........-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- ------.... .......... 841 .......... .......... .......... .......... .......... .......... 901 .......... .......... .......... .......... .......... .......... 961 .....-..|. .......... .......... .|........ -......... .....-.... 1021 .......... ....---... ..-..---.. .......... .......... .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .......... .......... .......... .......... .......... 1201 .......... .......... .......... .......... .......... .......... 1261 .......... .......... .........- .......... ..----.... ........-- 1321 .......... .......... .......... .......... .......... .......... 1381 ......---. .......... .......-.. .......... .......... .......... 1441 .......... ........-. ..-....... .......... .......... ........-. 1501 ...|...-.. .......... .......... .......... .......... .....-...| 1561 .......... .......... .......... .......... .--....... .......... 1621 .......... .......... .......... .......... .......... .......... 1681 .......... .......... .......... .......... .......... .......... 1741 .......... .......... .......... .......... .......... .......... 1801 .......... .......... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .......... .......... 1921 .......... .......-.. .......... -.......-. .......... .......... 1981 .....-.... ...--..... .......... .......... -......... .......... 2041 .......... .....----. .......... .......... .....----- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- --------.. .......... .......... .......... 2221 .......... .......... .......... .......... ........|. .......-.. 2281 .......... -......... ......--.. .-........ .......... ---....... 2341 .......... ...-...... ....-..... .......... .......... .......... 2401 ....|..... .......... .......... .......... .......... .....-.... 2461 .....--... .......... .......... .......... .......... .......... 2521 .--....-.. |......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... .......... 2701 .-..-..... .......... .......... .......... .......... .......... 2761 ..|....... .......... ........|. ........-. |......... .......... 2821 .--------- ----...... .-........ .......... .......... .......... 2881 .....---.. ..-....... .......... .......... .......... .......... 2941 .......... .......... .......... .......... .......... .......... 3001 .......... .......... .......... .......... .......... .......... 3061 .......... .......... .......... .......... .--....... ...-.....- 3121 .......--. |......... .......-.. .......... .-........ .........- 3181 .......... .-........ .......... .......... .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .......... .......... .......... 3361 .......... .......... .......... .......... .....--... .......... 3421 .......... .......... .......... .......... .......... .......... 3481 .......... ........-- --........ .......... .......... .......... 3541 .......... .......... .......... .......... .......... .......... 3601 .......... .......... .......... .......... .......... .......... 3661 .......... .......... .......... .......... .......... .......... 3721 .......... .......... .......... .......... .....-.... .......... 3781 .......... .......... .......... ......|... ...------- -------... 3841 ...-..-... ..-....... .......... ..-....... ......-... ..--...... 3901 .......... .......... .......... .......... .......... .......... 3961 .......... .......... ...-...... .......... .......... .......... 4021 ......---. .......... .-........ .-........ .......... .......... 4081 .......... .......... ......-... .......... .........- .......... 4141 .-.-...... .......... .......... .......... .-........ .......... 4201 .......... .......... .......... .......... .......... .......... 4261 .......... .......... .......... .-........ ...-...... .......... 4321 .......... ......-... .........- .......... -......... .........- 4381 .....-.... .......... ........-- ....-..... .......... .......... 4441 .......... .......... .......... .......... .......... .......... 4501 .......... .......... ...--..... ........-- .......... .......... 4561 .......... .......... ........-. .......... ........-. ...-...... 4621 -.....-... .......... .......... .......... .......... .......... 4681 .......... .......... .......... .......... .......... .......... 4741 .......... .......... .......... .......... .......... .......... 4801 .......... .......... .......... .......... .......... .......... 4861 .......... .......... .......... .......... .......... .......... 4921 .......... .......... .......... .......... .......... .......... 4981 .......... .......... .......... .......... .......... .......... 5041 .......... .......... .......... .......... .......... .......... 5101 .......... .......... .......... .......... .......... .......... 5161 .......... .......... .......... .......... ........|| ||| // LOCUS mt.C.anoma 5213 bp RNA RNA 20-OCT-1997 DEFINITION Mitochondrion Campostoma anomalum.; . ACCESSION AF023184 KEYWORDS . SOURCE Mitochondrion Campostoma anomalum. ORGANISM Mitochondrion Campostoma anomalum. REFERENCE 1 (bases 1 to 956) AUTHORS Simons,A.M. and Mayden,R.L. TITLE Phylogenetic Relationships of the Creek Chubs and the Spine-Fins: an Enigmatic Group of North American Cyprinid Fishes (Actinopterygii: Cyprinidae) JOURNAL Cladistics 13 (3) (1997) In press STANDARD No information REFERENCE 2 (bases 1 to 956) AUTHORS Simons,A.M. and Mayden,R.L. TITLE Direct Submission JOURNAL Submitted (08-SEP-1997) Department of Biological Sciences, The University of Alabama, Box 870344, Tuscaloosa, AL 35487-0344, USA STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: AF023184 BASE COUNT 296 a 249 c 222 g 189 t 4257 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --uaaAGGCA 661 (UGG-)U-CC U|GACCU-UA UUA-UCAGCU -U-UAAC-CU |AA-CU--UA -CAC-A-UGC 721 -AAGu----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------cuc c)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------|- gCAGCCCCGU GAGUA---CG C|CCU-Caa- --uc-cc--- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- --(cugcccg -----)---- 1261 ---------- ---------- --gg--ga-- --cGAGGAGC |--------- AGGUAUCA-- 1321 -GGCACAA-- -----(accc ---------- ---------- ---------- ------)--- 1381 ---UU|---A GCCCA--AGA C|GCCUG-GC --|------- (-cua--)-- -------GC| 1441 CACA------ ---------- ---------- -|-CCCC--( CAAG-)--GG AAuu---C-A 1501 GCA|GUG-AU AAAUAUUAAG C-CAUAAGU( ---------- ----GAAA)A CUUGA-CUC| 1561 A|-GUUA-A- GG-UUA---a aa-------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- GGGCC|-GGU 1921 -AAA-A---C UCGU-G(-CC AGCCACC-GC -GGU-UA)-G ACGAGA|--- -GGC-CCU-- 1981 AGUUG-AUAG U-------au aaCGGC|GUA AAGGGUGGUU -A-agg---- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 ------a--- -uacugagac aauaaa--gc -----|CGAA uggcCC-UUU ----GGCU(G 2341 UCAUA)CGCU UC-------u AGGa-guccG AAG------- ---accaaua -UAC(-GAAA 2401 -)GU|A---- ----gcuuua a-----agga gucca----- ccu-gaccCC ACGAA-AGCU 2461 G-AGA---AA CAAACUGGG( AUUAGAUAC) CCCA-CUAU| -GCUC-AGC- CGUAAA-CUU 2521 A--GACG-UC |AA|------ ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- --c(cuac)a a--uaaGACG 2701 U-C|--C|GC C-CGGG-UAC UACGAGC(-- -AUUA--)GC UUG--AAACC CAAAGGAC-C 2761 UG|ACGGUG- CCUCAGA-CC CCCCUAGA|G GAGCCUAU-U |CUAGA--AC CG(AUAACCC 2821 C--------- ----)CGUUA A-ACCUCACC ACUUCUAGCC ---------- ---------- 2881 (-------ac cc-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGC CUA-UA|UA- 3121 |CC|-GC--C |G------UC GU-CA|G-CU UAC-|CCU(G --UGA)AGG- -----(caa- 3181 uaa)------ a-aGUAAGCA AAA-UGGG-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ----cacaa- 3781 ---------C CCAGAA-CGU C-AGGUCGAG G|UGUA|GCG UAC------- ---------G 3841 A-A-GC-GG- GA-AGA--AA -UGGGCUACA UU--UUCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--u ua---)---- ---------- ---------- UAG-AAcac- 4021 ---------- -----UACGG --ACAUG-CA ACA(------ ---------- ---------- 4081 ---------- ---------- UGAAA----) U-AG-U--GC -U--UGAAG- -GAGGAUUUA 4141 G-u--AGUAA A-GAGGAA(- gcaga-gu-- --)GUCCUUU U-GAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -CCC--GGCU 4261 CUGAGA-CG- CGUACACA-C -CGCCCGUCA C-UCU--CCC CU-------- ---------- 4321 ---------- ---------- ---------- ---------- ---------< -gucaaaau- 4381 gcaac-aaga uuaccuaaua cuagagccau gaca------ ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- ---------A GGGG-AGG-C AAGUCGUAAC AUGGUAAG-U GUA-CC(GGA 4621 -A)-GU-GC- ACUUGGAUAA AAU------| ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- --------|| ||| // LOCUS mt.C.aurat 5213 bp RNA RNA 04-JUL-1998 DEFINITION Mitochondrion Carassius auratus.; NADH dehydrogenase subunit 1; tRNA-Pro; tRNA-Thr; cytochrome b; tRNA-Glu; NADH dehydrogenase subunit 6; NADH hydrogenase subunit 5; tRNA-Leu(CUN); tRNA-Ser(AGY) ; tRNA-His; NADH dehydrogenase subunit 4; tRNA-Arg; tRNA-Gly; cytochrome c oxidase subunit III; ATPase 6; ATPase 8; tRNA-Lys; cytochrome c oxidase subunit II; tRNA-Asp; tRNA-Ser(UCN); cytochrome c oxidase subunit I; tRNA-Tyr; tRNA-Cys; tRNA-Asn; tRNA-Ala; tRNA-Trp; NADH dehydrogenase subunit 4L; NADH dehydrogenase subunit 3; NADH dehydrogenase subunit 2; tRNA-Met; tRNA-Gln; tRNA-Ile; tRNA-Leu(UUR); 16S ribosomal RNA; tRNA-Val; 12S ribosomal RNA; tRNA-Phe. ACCESSION AB0069 3 KEYWORDS NADH dehydrogenase subunit 1; tRNA-Pro; tRNA-Thr; cytochrome b; tRNA-Glu; NADH dehydrogenase subunit 6; NADH hydrogenase subunit 5; tRNA-Leu(CUN); tRNA-Ser(AGY); tRNA-His; NADH dehydrogenase subunit 4; tRNA-Arg; tRNA-Gly; cytochrome c oxidase subunit III; ATPase 6; ATPase 8; tRNA-Lys; cytochrome c oxidase subunit II; tRNA-Asp; tRNA-Ser(UCN); cytochrome c oxidase subunit I; tRNA-Tyr; tRNA-Cys; tRNA-Asn; tRNA-Ala; tRNA-Trp; NADH dehydrogenase subunit 4L; NADH dehydrogenase subunit 3; NADH dehydrogenase subunit 2; tRNA-Met; tRNA-Gln; tRNA-Ile; tRNA-Leu(UUR); 16S ribosomal RNA; tRNA-Val; 12S ribosomal RNA; tRNA-Phe. SOURCE Mitochondrion Carassius auratus. ORGANISM Mitochondrion Carassius auratus. REFERENCE 1 (sites) AUTHORS Murakami,M., Yamashita,Y. and Fujitani,H. TITLE ) The complete sequence of mitochondrial genome from a gynogenetic triploid 'ginbuna' (Carassius auratus langsdorfi JOURNAL Zool. Sci. (1998) In press STANDARD No information REFERENCE 2 (bases 1 to 16578) AUTHORS Murakami,M. TITLE Direct Submission JOURNAL Submitted (29-AUG-1997) to the DDBJ/EMBL/GenBank databases. Masaru Murakami, Azabu University School of Veterinary Medicine, Laboratory of Molecular Biology; 1-17-71 Fuchinobe, Sagamihara, Kanagawa 229-8501, Japan (E-mail:murakami@azabu-u.ac.jp, Tel: 0427-54-7111, Fax: 0427-53-3395) STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: AB006953 BASE COUNT 305 a 253 c 209 g 187 t 4259 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --caaAGGCA 661 (UGG-)U-CC C|GACCU-UA UUA-UCAGCU -U-UAAC-UC |AA-CU--UA -CAC-A-UGC 721 -AAGu----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------cuc c)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------|- gCACCCCAGU GAAUA---UG C|CCU-Caa- --uc-cc--- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- --(ccuaccc g----)---- 1261 ---------- ---------- --gg--ga-- --cGAGGAGC |--------- GGGCAUCA-- 1321 -GGCACAA-- -----(aua- ---------- ---------- ---------- ------)--- 1381 ---UU|---a GCCCA--AGA C|GCCUA-GC --|------- (-cga--)-- -------GC| 1441 CACa------ ---------- ---------- -|-CCCC--( CAAG-)--GG AAuu---C-A 1501 GCA|GUG-AU AAACAUUAAG C-CAUAAGU( ---------- ----GAAA)A CUUGA-CUC| 1561 A|-GUUA-G- UG-UUA---a ga-------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- GGGCC|-GGU 1921 -AAA-A---C UCGU-G(-CC AGCCACC-GC -GGU-UA)-G ACGAGA|--- -GGC-CCU-- 1981 AGUUG-AUAU U-------AC AACGGC|GUA AAGGGUGGUU -A-agg---- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 ------a--- --uaaacaaa aauaaa--gu -----|CAAA uggccc-cuu ----GGCC(G 2341 UCAUA)CGCU UC------ua ggcg-uc-cG AAG------- ----cccuaa -uAC(-GAAA 2401 -)GU|a---- ----acuuua a-----uaaa ccca------ ccu-gaccCC ACGAA-AGCU 2461 G-AGA---AA CAAACUGGG( AUUAGAUAC) CCCA-CUAU| -GCUC-AGC- CGUAAA-CUU 2521 A--GACA-UC |CA|------ ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- --a(cuac)a a--uA-GAUG 2701 U-C|--C|GC C-AGGG-UAC UACGAGC(-- -AUUA--)GC UUA--AAACC CAAAGGAC-C 2761 UG|ACGGUG- UCUCAGA-UC CCCCUAGA|G GAGCCUGU-U |CUAGA--AC CG(AUAACCC 2821 C--------- ----)CGUUC A-ACCUCACC ACUCCUAGCC ---------- ---------- 2881 (-------aa cc-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGC CUA-UA|UA- 3121 |CC|-GC--C |G------UC GU-CA|G-CU UAC-|CCU(G --UGA)AGG- -----(uaa- 3181 uaa)------ A-AGUAAGCA AAA-UGGG-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ----uacaa- 3781 ---------C CCAAAA-CGU C-AGGUCGAG G|UGUA|GCG CAU------- ---------G 3841 A-A-GU-GG- GA-AGA--AA -UGGGCUACA UU--UUCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--a ca---)---- ---------- ---------- UAG-AAuau- 4021 ---------- -----CACGA --ACAUG-CA C-C(------ ---------- ---------- 4081 ---------- ---------a UGAAAC---) A-GU-G---C -U--UGAAG- -GAGGAUUUA 4141 G-U--AGUAA A-AGGGAA(- auaga-gu-- --)GUCCCUU U-GAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -CCC--GGCU 4261 CUGAGA-CG- CGUACACA-C -CGCCCGUCA C-UCU--CCC CU-------- ---------- 4321 ---------- ---------- ---------- ---------- ---------< -gucaaaau- 4381 gcacc-agaa auaucuaaua uaauagcacu gaca------ ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- ---------A GGGG-AGG-C AAGUCGUAAC ACGGUAAG-U GUA-CC(GGA 4621 -A)GGU-GC- ACUUGGAUCA AACC-----| ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- --------|| ||| // LOCUS mt.C.carpi 5213 bp RNA RNA 11-JAN-191 DEFINITION Mitochondrion Cyprinus carpio. ACCESSION No information KEYWORDS No information. SOURCE Mitochondrion Cyprinus carpio. ORGANISM Mitochondrion Cyprinus carpio. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: X61010 DEFINITION C.carpio complete mitochondrial genome DNA SOURCE Mitochondrion Cyprinus carpio DNA. ORGANISM Mitochondrion Cyprinus carpio Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Osteichthyes; Actinopterygii; Cypriniformes; Cyprinoidei; Cyprinidae. REFERENCE 1 (bases 1 to 16364) AUTHORS Chang,Y.S. and Huang,F.l. TITLE The cDNA and primary structure of pregrowth hormones of three species o cyprinadae: silver carp, bighead carp andd grass carp JOURNAL Unpublished (1991) COMMENT See X00918 and X17006 for overlapping sequences From EMBL entry MICCCG; dated 15-AUG-1991. FEATURES Location/Qualifiers tRNA 928..996 /gene="tRNA-Phe" rRNA 997..1947 /gene="12S rRNA" tRNA 1948..2019 /gene="tRNA-Val" rRNA 2020..3489 /gene="16S rRNA" tRNA 3490..3566 /gene="tRNA-Leu (UUR)" CDS 3567..4541 /product="NADH ubiquinone oxidoreductase subunit 1" /codon_start=1 tRNA 4545..4617 /gene="tRNA-Ile" tRNA complement(4615..4685) /gene="tRNA-Gln" tRNA 4688..4756 /gene="tRNA-Met" CDS 4757..5803 /product="NADH ubiquinone oxidoreductase subunit 2" /codon_start=1 tRNA 5802..5872 /gene="tRNA-Trp" tRNA complement(5875..5942) /gene="tRNA-Ala" tRNA complement(5944..6016) /gene="tRNA-Asn" tRNA complement(6049..6117) /gene="tRNA-Cys" tRNA complement(6116..6185) /gene="tRNA-Tyr" CDS 6187..7737 /product="cytochrome c oxidasesubunit I" /gene="CoxI" /codon_start=1 tRNA complement(7738..7808) /gene="tRNA-Ser (UCN)" tRNA 7812..7883 /gene="tRNA-Asp" CDS 7897..8586 /product="cytochrome c oxidase subunit II" /gene="CoxII" /codon_start=1 tRNA 8588..8661 /gene="tRNA-Lys" CDS 8665..8829 /product="ATPase 8" /codon_start=1 CDS 8823..9506 /product="ATPase 6" /codon_start=1 CDS 9506..10291 /product="cytochrome c oxidase subunit III" /gene="CoxIII" /codon_start=1 tRNA 10291..10362 /gene="tRNA-Gly" CDS 10363..10713 /product="NADH ubiquinone oxidoreductase subunit 3" /codon_start=1 tRNA 10712..10781 /gene="tRNA-Arg" CDS 10782..11078 /product="NADH ubiquinone oxidoreductase subunit4L" /codon_start=1 CDS 11072..12454 /product="NADH ubiquinone oxidoreductase subunit 4" /codon_start=1 tRNA 12453..12521 /gene="tRNA-His" tRNA 12522..12590 /gene="tRNA-Ser (AGY)" tRNA 12592..12664 /gene="tRNA-Leu (CUN)" CDS 12668..14491 /product="NADH ubiquinone oxidoreductase subunit 5" /codon_start=1 CDS complement(14488..15006) /product="NADH ubiquinone oxidoreductase subunit 6" /codon_start=1 tRNA complement(15007..15075) /gene="tRNA-Glu" CDS 15081..16223 /product="cytochrome b" /codon_start=1 tRNA 16222..16293 /gene="tRNA-Thr" tRNA complement(16292..16363) /gene="tRNA-Pro" BASE COUNT 309 a 256 c 204 g 182 t 4262 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ----|----- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --caaAGGCA 661 (UGG-)U-CC C|GACCU-UA UUA-UCAGCU -C-UAAC-UC |AA-CU--UA -CAC-A-UGC 721 -AAGu----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------cuc c)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------|- gCAACCCAGU GAAUA---UG C|CCU-Caa- --uc-cc--- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- --(cccaccc -----)---- 1261 ---------- ---------- --gg--ga-- --cGAGGAGC |--------- GGGCAUCA-- 1321 -GGCACAA-- -----(aca- ---------- ---------- ---------- ------)--- 1381 ---UU|---A GCC-A--AGA C|GCCUA-GC --|------- (-caa--)-- -------GC| 1441 CACA------ ---------- ---------- -|-CCCC--( CAA--)--GG AAuu---C-A 1501 GCA|GUG-AU AAACAUUAAG C-CAUAAGU( ---------- ----GAAA)A CUUGA-CUC| 1561 A|-GUUA-G- UG-UUA---a ga-------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- GGGCC|-GGU 1921 -AAA-A---C UCGU-G(-AC AGCCACC-GC -GGU-UA)-G ACGAGA|--- -GGC-CCU-- 1981 AGUUG-AUAU U-------AC AACGGC|GUA AAGGGUGGUU -A-agg---- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 ------a--- --uaaacaaa aauaaa--gu -----|CAAA uggccc-cuu ----GGCC(G 2341 UCAUA)CGCU UC------ua ggag-uc-cG AAG------- ----cccuaa -uAC(-GAAA 2401 -)GU|a---- ----acuuua a-----uaaa ccca------ ccu-gaccCC ACGAA-AGCU 2461 G-AGA---AA CAAACUGGG( AUUAGAUAC) CCCA-CUAU| -GCUC-AGC- CGUAAA-CUC 2521 A--GACA-UC |CA|------ ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- --g(cuac)a au-uA-GAUG 2701 U-C|--C|GC C-AGGG-UAC UACGAGC(-- -AUUA--)GC UUA--AAACC CAAAGGAC-C 2761 UG|ACGGUG- UCUCAGA-CC CCCCUAGA|G GAGCCUGU-U |CUAGA--AC CG(AUAACCC 2821 C--------- ----)CGUUC A-ACCUCACC ACUUCUAGCC ---------- ---------- 2881 (-------ac cc-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGC CUA-UA|UA- 3121 |CC|-GC--C |G------UC GU-CA|G-CU UAC-|CCU(G --UGA)AGG- -----(uaa- 3181 uaa)------ A-AGUAAGCA AAA-UGGG-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ----cacaa- 3781 ---------C CCAAAA-CGU C-AGGUCGAG G|UGUA|GCG CAU------- ---------G 3841 A-A-GU-GG- GA-AGA--AA -UGGGCUACA UU--UUCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--a ua---)---- ---------- ---------- UAG-AAuau- 4021 ---------- -----UACGA --ACAUG-CA CCA(------ ---------- ---------- 4081 ---------- ---------- UGAAA----) CAAU-G---C -U--UGAAG- -GAGGAUUUA 4141 G-U--AGUAA A-AGGGAA(- guaga-gu-- --)GUCCCUU UUGAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -CCC--GGCU 4261 CUGAGA-CG- CGUACACA-C -CGCCCGUCA C-UCU--CCC CU-------- ---------- 4321 ---------- ---------- ---------- ---------- ---------< -gucaaaac- 4381 gcacc-aaaa auacauaaua caacagcacu gaca------ ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- ---------A GGGG-AGG-C AAGUCGUAAC ACGGUAAG-U -UA-CC(GGA 4621 -A)-GU-GC- ACUUGGAUCA AACC-----| ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- --------|| ||| // LOCUS mt.H.fla.1 5213 bp RNA RNA 20-OCT-1997 DEFINITION Mitochondrion Hemitremia flammea.; . ACCESSION AF023189 KEYWORDS . SOURCE Mitochondrion Hemitremia flammea. ORGANISM Mitochondrion Hemitremia flammea. REFERENCE 1 (bases 1 to 952) AUTHORS Simons,A.M. and Mayden,R.L. TITLE Spine-Fins: an Enigmatic Group of North American Cyprinid Fishes (Actinopterygii: Cyprinidae) Phylogenetic Relationships of the Creek Chubs and the JOURNAL Cladistics 13 (3) (1997) In press STANDARD No information REFERENCE 2 (bases 1 to 952) AUTHORS Simons,A.M. and Mayden,R.L. TITLE Direct Submission JOURNAL Submitted (08-SEP-1997) Department of Biological Sciences, The University of Alabama, Box 870344, Tuscaloosa, AL 35487-0344, USA STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: AF023189 BASE COUNT 284 a 238 c 222 g 208 t 4261 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --uaaAGGCA 661 (UGG-)U-CC C|GACCU-UA UUA-UCAGCU -U-UAAC-CC |GA-CU--UA -CAC-A-UGC 721 -AAGu----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------cuc c)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------|- gCAGCCCUGU GAGUA---UG C|CCU-Uaa- --uc-cc--- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- --(cugcccg -----)---- 1261 ---------- ---------- --gg--ga-- --cGAGGAGC |--------- GGGCAUCA-- 1321 -GGCACAA-- -----(auuu ---------- ---------- ---------- ------)--- 1381 ---UU|---A GCCCA--AGA C|GCCUA-GC --|------- (-cuu--)-- -------GC| 1441 CACA------ ---------- ---------- -|-CCCC--( CAAG-)--GG AAuu---C-A 1501 GCA|GUG-AU AAAUAUUAAG C-CAUGAGU( ---------- ----GAAA)A CUUGA-CUC| 1561 A|-GUUA-G- GG-UUA---a ga-------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- GGGCC|-GGU 1921 -AAA-A---C UCGU-G(-CC AGCCACC-GC -GGU-UA)-G ACGAGA|--- -GGC-CCU-- 1981 AGUUG-AUAU G--------u aaCGGC|GUA AAGGGUGGUU -A-agg---- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 ------g--- --augcaaac aauaaa--gu -----|CGAA uggcCC-UUU ----GGCU(G 2341 UCAUA)CGCU UC-------u AGGu-gccuG AAG------- ---cccagua -UAC(-GAAA 2401 -)GU|C---- ----acuuua a-----aaua gccca----- ccu-gaccCC ACGAA-AGCU 2461 G-AGA---AA CAAACUGGG( AUUAGAUAC) CCCA-CUAU| -GCUC-AGU- CAUAAA-CUU 2521 A--GACG-UU |CA|------ ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- --a(cuac)a a--uuAGACG 2701 U-C|--C|GC C-CGGG-UAC UACGAGC(-- -AUUA--)GC UUA--AAACC CAAAGGAC-C 2761 UG|ACGGUG- CCUUAGA-CC CCCCUAGA|G GAGCCUGU-U |CUAGA--AC CG(AUAACCC 2821 U--------- ----)CCUUA A-ACCUCACC ACUUUUAGCC ---------- ---------- 2881 (-------ac cc-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGC CUA-UA|UA- 3121 |CC|-GC--C |G------UC GU-CA|G-CU UAC-|CCU(G --UGA)AGG- -----(caa- 3181 uaa)------ a-aGUAAGCA AAA-UGGG-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ----cau--- 3781 ---------A GCAGAA-CGU C-AGGUCGAG G|UGUA|GCG UAC------- ---------G 3841 A-A-GU-GG- GA-AGA--AA -UGGGCUACA UU--UUCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--u ua---)---- ---------- ---------- UAG-AAuac- 4021 ---------- -----UACGG --AUGUG-CA ACA(------ ---------- ---------- 4081 ---------- ---------- UGAAA----) U-AG-U--GC -U--UAAAG- -GAGGAUUUA 4141 G-u--AGUAA A-AAGGAA(- guagc-gu-- --)GUCCUUU U-GAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -CCC--GGCU 4261 CUGAGG-CG- CGUACACA-C -CGCCCGUCA C-UCU--CCC CU-------- ---------- 4321 ---------- ---------- ---------- ---------- ---------< -gucaaaau- 4381 gcaau-auua auaccuaaua cuaacgcgcu gaca------ ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- ---------A GGGG-AGG-C AAGUCGUAAC AUGGUAAG-U GUA-CC(GGA 4621 -A)-GU-GC- ACUUGGAUUA AAU------| ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- --------|| ||| // LOCUS mt.H.fla.2 5213 bp RNA RNA 20-OCT-1997 DEFINITION Mitochondrion Hemitremia flammea.; . ACCESSION AF023190 KEYWORDS . SOURCE Mitochondrion Hemitremia flammea. ORGANISM Mitochondrion Hemitremia flammea. REFERENCE 1 (bases 1 to 952) AUTHORS Simons,A.M. and Mayden,R.L. TITLE Fishes (Actinopterygii: Cyprinidae) Phylogenetic Relationships of the Creek Chubs and the Spine-Fins: an Enigmatic Group of North American Cyprinid JOURNAL Cladistics 13 (3) (1997) In press STANDARD No information REFERENCE 2 (bases 1 to 952) AUTHORS Simons,A.M. and Mayden,R.L. TITLE Direct Submission JOURNAL Submitted (08-SEP-1997) Department of Biological Sciences, The University of Alabama, Box 870344, Tuscaloosa, AL 35487-0344, USA STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: AF023190 BASE COUNT 284 a 238 c 223 g 207 t 4261 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --uaaAGGCA 661 (UGG-)U-CC C|GACCU-UA UUA-UCAGCU -U-UAAC-CC |GA-CU--UA -CAC-A-UGC 721 -AAGu----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------cuc c)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------|- gCAGCCCUGU GAGUA---UG C|CCU-Uaa- --uc-cc--- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- --(cugcccg -----)---- 1261 ---------- ---------- --gg--ga-- --cGAGGAGC |--------- GGGCAUCA-- 1321 -GGCACAA-- -----(auuu ---------- ---------- ---------- ------)--- 1381 ---UU|---A GCCCA--AGA C|GCCUA-GC --|------- (-cuu--)-- -------GC| 1441 CACA------ ---------- ---------- -|-CCCC--( CAAG-)--GG AAuu---C-A 1501 GCA|GUG-AU AAAUAUUAAG C-CAUGAGU( ---------- ----GAAA)A CUUGA-CUC| 1561 A|-GUUA-G- GG-UUA---a ga-------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- GGGCC|-GGU 1921 -AAA-A---C UCGU-G(-CC AGCCACC-GC -GGU-UA)-G ACGAGA|--- -GGC-CCU-- 1981 AGUUG-AUAU G--------u aaCGGC|GUA AAGGGUGGUU -A-agg---- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 ------g--- --augcaaac aauaaa--gu -----|CGAA uggcCC-UUU ----GGCU(G 2341 UCAUA)CGCU UC-------u AGGu-gccuG AAG------- ---cccagca -UAC(-GAAA 2401 -)GU|C---- ----acuuua a-----aaua gccca----- ccu-gaccCC ACGAA-AGCU 2461 G-AGA---AA CAAACUGGG( AUUAGAUAC) CCCA-CUAU| -GCUC-AGU- CAUAAA-CUU 2521 A--GACG-UU |CA|------ ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- --a(cuac)a a--uuaGACG 2701 U-C|--C|GC C-CGGG-UAC UACGAGC(-- -AUUA--)GC UUA--AAACC CAAAGGAC-C 2761 UG|ACGGUG- CCUUAGA-CC CCCCUAGA|G GAGCCUGU-U |CUAGA--AC CG(AUAACCC 2821 U--------- ----)CGUUA A-ACCUCACC ACUUUUAGCC ---------- ---------- 2881 (-------ac cc-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGC CUA-UA|UA- 3121 |CC|-GC--C |G------UC GU-CA|G-CU UAC-|CCU(G --UGA)AGG- -----(caa- 3181 uaa)------ a-aGUAAGCA AAA-UGGG-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ----cau--- 3781 ---------A GCAGAA-CGU C-AGGUCGAG G|UGUA|GCG UAC------- ---------G 3841 A-A-GU-GG- GA-AGA--AA -UGGGCUACA UU--UUCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--u ua---)---- ---------- ---------- UAG-AAuac- 4021 ---------- -----UACGG --AUGUG-CA ACA(------ ---------- ---------- 4081 ---------- ---------- UGAAA----) U-AG-U--GC -U--UAAAG- -GAGGAUUUA 4141 G-u--AGUAA A-AAGGAA(- guagc-gu-- --)GUCCUUU U-GAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -CCC--GGCU 4261 CUGAGG-CG- CGUACACA-C -CGCCCGUCA C-UCU--CCC CU-------- ---------- 4321 ---------- ---------- ---------- ---------- ---------< -gucaaaau- 4381 gcaau-auua auaccuaaua cuaacgcgcu gaca------ ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- ---------A GGGG-AGG-C AAGUCGUAAC AUGGUAAG-U GUA-CC(GGA 4621 -A)-GU-GC- ACUUGGAUUA AAU------| ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- --------|| ||| // LOCUS mt.L.vitta 5213 bp RNA RNA 20-OCT-1997 DEFINITION Mitochondrion Lepidomeda vittata.; . ACCESSION AF023191 KEYWORDS . SOURCE Mitochondrion Lepidomeda vittata. ORGANISM Mitochondrion Lepidomeda vittata. REFERENCE 1 (bases 1 to 952) AUTHORS Simons,A.M. and Mayden,R.L. TITLE Phylogenetic Relationships of the Creek Chubs and the Spine-Fins: an Enigmatic Group of North American Cyprinid Fishes (Actinopterygii: Cyprinidae) JOURNAL Cladistics 13 (3) (1997) In press STANDARD No information REFERENCE 2 (bases 1 to 952) AUTHORS Simons,A.M. and Mayden,R.L. TITLE Direct Submission JOURNAL Submitted (08-SEP-1997) Department of Biological Sciences, The University of Alabama, Box 870344, Tuscaloosa, AL 35487-0344, USA STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: AF023191 BASE COUNT 285 a 247 c 226 g 194 t 4261 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --uaaAGGCA 661 (UGG-)U-CC U|GACCU-UA UUA-UCAGCU -C-UAAC-CC |GA-CU--UA -CAC-A-UGC 721 -AAGu----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------cuc c)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------|- gCAGCCCCGU GAGUA---UG C|CCU-Uaa- --uc-cc--- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- --(cugcccg -----)---- 1261 ---------- ---------- --gg--ga-- --cGAGGAGC |--------- GGGCAUCA-- 1321 -GGCACAA-- -----(auuu ---------- ---------- ---------- ------)--- 1381 ---UU|---A GCCCA--AGA C|GCCUG-GC --|------- (-cua--)-- -------GC| 1441 CACA------ ---------- ---------- -|-CCCC--( CAAG-)--GA A-uu---C-A 1501 GCA|GUG-AU AAAUAUUAAG C-CAUGAGU( ---------- ----GAAA)A CUUGA-CUC| 1561 A|-GUCA-G- GG-UUA---a ga-------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- GGGCC|-GGU 1921 -AAA-A---C UCGU-G(-CC AGCCACC-GC -GGU-UA)-A ACGAGA|--- -GGC-CCU-- 1981 AGUUG-AUGU U-------ac aaCGGC|GUA AAGGGUGGUU -A-agg---- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 ------a--- -acgcaagau aauaaa--gc -----|CGAA uggcCC-UUU ----GGCU(G 2341 UCAUA)CGCU UC-------u AGGu-guccG AAG------- ---cccaaua -UAC(-GAAA 2401 -)GU|A---- ----gcuuua a-----gaaa gccca----- ccu-gaccCC ACGAA-AGCU 2461 G-AGG---AA CAAACUGGG( AUUAGAUAC) CCCA-CUAU| -GCUC-AGC- CAUAAA-CCU 2521 A--GAU--UC |CA|------ ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- --g(cuac)a a--uuaGACA 2701 U-C|--C|GC C-CGGG-UAC UACGAGC(-- -AUUA--)GC UUG--AAACC CAAAGGAC-C 2761 UG|ACGGUG- CCUUAGA-CC CCCCUAGA|G GAGCCUGU-U |CUAGA--AC CG(AUAACCC 2821 U--------- ----)CGUUA A-ACCUCACC ACUUCUAGCC ---------- ---------- 2881 (-------ac cc-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGC CUA-UA|UA- 3121 |CC|-GC--C |G------UC GU-CA|G-CU UAC-|CCU(G --UGA)AGG- -----(caa- 3181 uaa)------ a-aGUAAGCA AAA-UGGG-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ----cau--- 3781 ---------A GCAGAA-CGU C-AGGUCGAG G|UGUA|GCG UAC------- ---------G 3841 A-A-GU-GG- GA-AGA--AA -UGGGCUACA UU--UUCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--u ua---)---- ---------- ---------- UAG-AAuac- 4021 ---------- -----UACGG --AUAUG-CA ACA(------ ---------- ---------- 4081 ---------- ---------- UGAAA----) U-GG-U--GC -U--UGAAG- -GAGGAUUUA 4141 G-u--AGUAA A-GAGGAA(- acaga-gu-- --)GUCCUUU U-GAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -CCC--GGCU 4261 CUGAGG-CG- CGUACACA-C -CGCCCGUCA C-UCU--CCC CU-------- ---------- 4321 ---------- ---------- ---------- ---------- ---------< -gucaacau- 4381 gcaau-aaag auaccuaacc caaacgcgcc gaca------ ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- ---------A GGGG-AGG-C AAGUCGUAAC AUGGUAAG-U GUA-CC(GGA 4621 -A)-GU-GC- ACUUGGAUUA AAU------| ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- --------|| ||| // LOCUS mt.A.bjoer 5213 bp RNA RNA 02-JUN-1998 DEFINITION Mitochondrion Abramis bjoerkna.; . ACCESSION AF0384 8 KEYWORDS . SOURCE Mitochondrion Abramis bjoerkna. ORGANISM Mitochondrion Abramis bjoerkna. REFERENCE 1 (bases 1 to 2717) AUTHORS Simons,A.M. and Mayden,R.L. TITLE Phoxinins (Actinopterygii: Cyprinidae) as Inferred from Mitochondrial 12S and 16S Ribosomal RNA Sequences Phylogenetic Relationships of the Western North American JOURNAL Mol. Phylogenet. Evol. (1998) In press STANDARD No information REFERENCE 2 (bases 1 to 2717) AUTHORS Simons,A.M. and Mayden,R.L. TITLE Direct Submission JOURNAL Submitted (15-DEC-1997) Department of Biological Sciences, The University of Alabama, Box 870344, Tuscaloosa, AL 35487-0344, USA STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: AF038468 BASE COUNT 294 a 250 c 219 g 189 t 4261 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --uaaAGGCA 661 (UGG-)U-CC U|GACCU-UA UUA-UNNNNU -U-UAAC-CC |AA-CU--UA -CAC-A-UGC 721 -AAGu----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------cuc c)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------|- gCAACCCCGU GAGUA---CG C|CCU-Uaa- --uc-cc--- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- --(ccacccc g----)---- 1261 ---------- ---------- --gg--ga-- --cGAGGAGC |--------- GGGCAUCA-- 1321 -GGCACAA-- -----(guuu ---------- ---------- ---------- ------)--- 1381 ---UU|---A GCCCA--AGA C|GCCUG-GC --|------- (-cga--)-- -------GC| 1441 CACA------ ---------- ---------- -|-CCCC--( CAAG-)--GG AAuu---C-A 1501 GCA|GUG-AU AAAUAUUAAG C-CAUAAGU( ---------- ----GAAA)G CUUGA-CUC| 1561 A|-AUCA-G- GG-UUA---a ga-------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- GGGCC|-GGU 1921 -AAA-A---C UCGU-G(-CC AGCCACC-GC -GGU-UA)-A ACGAGA|--- -GGC-CCC-- 1981 AGUUA-AUAA U-------ac -aCGGC|GUA AAGGGUGGUU -A-agg---- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 ------a--- -aaguauaac gauaaa--gc -----|CGAA uaacCC-UUU ----GGCU(G 2341 UCAUA)CGCU UC-------u AGGu-guccG AAG------- ---uccaaua -UAC(-GAAA 2401 -)GU|A---- ----gcuuua a-----uaga gccca----- ccu-gaccCC ACGAA-AGCU 2461 G-AGA---AA CAAACUGGG( AUUAGAUAC) CCCA-CUAU| -GCUC-AGC- CGUAAA-CCC 2521 A--GACA-UC |CA|------ ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- --a(cuac)a a-uuA-GACG 2701 U-C|--C|GC C-CGGG-UAC UACGAGC(-- -AUUA--)GC UUG--AAACC CAAAGGAC-C 2761 UG|ACGGUG- CCUUAGA-CC CCCCUAGA|G GAGCCUGU-U |CUAGA--AC CG(AUAACCC 2821 U--------- ----)CGUUA A-ACCUCACC ACUUCUAGCC ---------- ---------- 2881 (-------au cc-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGC CUA-UA|UA- 3121 |CC|-GC--C |G------UC GU-CG|A-CU UAC-|CCU(G --UGA)AGG- -----(uga- 3181 uaa)------ a-aGUAAGCA AAA-UGGG-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ----cacaa- 3781 ---------C CCAGAA-CGU C-AGGUCGAG G|UGUA|GCG UAC------- ---------G 3841 A-A-GC-GG- GA-AGA--AA -UGGGCUACA UU--UUCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--c aa---)---- ---------- ---------- UAG-AAcac- 4021 ---------- -----UACGG --ACAUG-CA ACA(------ ---------- ---------- 4081 ---------- ---------- UGAAA----) U-AG-U--GC -U--UGAAG- -GAGGAUUUA 4141 G-U--AGUAA A-AAGGAA(- gcaga-gu-- --)GUCCUUU U-GAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -CCC--GGCU 4261 CUGAGG-CG- CGUACACA-C -CGCCCGUCA C-UCU--CCC CU-------- ---------- 4321 ---------- ---------- ---------- ---------- ---------< -gucaaaau- 4381 gcaau-aaag uuacuuaaca ccaaagcgcu gaca------ ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- ---------A GGGG-AGG-C AAGUCGUAAC AUGGUAAG-U GUA-CC(GGA 4621 -A)-GU-GC- ACUUGGACUA AAU------| ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- --------|| ||| // LOCUS mt.A.aluta 5213 bp RNA RNA 20-OCT-1997 DEFINITION Mitochondrion Acrocheilus alutaceus.; . ACCESSION AF023183 KEYWORDS . SOURCE Mitochondrion Acrocheilus alutaceus. ORGANISM Mitochondrion Acrocheilus alutaceus. REFERENCE 1 (bases 1 to 955) AUTHORS Simons,A.M. and Mayden,R.L. TITLE Spine-Fins: an Enigmatic Group of North American Cyprinid Fishes (Actinopterygii: Cyprinidae) Phylogenetic Relationships of the Creek Chubs and the JOURNAL Cladistics 13 (3) (1997) In press STANDARD No information REFERENCE 2 (bases 1 to 955) AUTHORS Simons,A.M. and Mayden,R.L. TITLE Direct Submission JOURNAL Submitted (08-SEP-1997) Department of Biological Sciences, The University of Alabama, Box 870344, Tuscaloosa, AL 35487-0344, USA STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: AF023183 BASE COUNT 295 a 246 c 222 g 191 t 4259 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --uaaAGGCA 661 (UGG-)U-CC U|GACCU-UA UUA-UCAGCU -C-UAAC-CC |AA-CU--UA -CAC-A-UGC 721 -AAGu----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------cuc c)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------|- gCAGUCCUGU GAGUA---CG C|CCU-Uaa- --uc-cc--- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- --(cugcccg -----)---- 1261 ---------- ---------- --gg--ga-- --cGAGGAGC |--------- GGGCAUCA-- 1321 -GGCACAA-- -----(auuu ---------- ---------- ---------- ------)--- 1381 ---UU|---A GCCCA--AGA C|GCCUG-GC --|------- (-caa--)-- -------GC| 1441 CACA------ ---------- ---------- -|-CCCC--( CAAG-)--GG AAuu---C-A 1501 GCA|GUG-AU AAAUAUUAAG C-CAUAAGU( ---------- ----GAAA)G CUUGA-CUC| 1561 A|-GUCA-G- GG-UUA---a ga-------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- GGGCC|-GGU 1921 -AAA-A---C UCGU-G(-CC AGCCACC-GC -GGU-UA)-A ACGAGA|--- -GGC-CCU-- 1981 AGUUG-AUAG U-------ac aaCGGC|GUA AAGGGUGGUU -A-agg---- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 ------a--- -aa-gcaaac aauaaa--gc -----|CAAA uggcCC-UUU ----GGCU(G 2341 UCAUA)CGCU UC-------u AGGu-gcccG AAG------- ---cccaaua -UAC(-GAAA 2401 -)GU|A---- ----gcuuua g-----aaaa gccca----- ccu-gacaCC ACGAA-AaCU 2461 G-AGA---AA CGAACUGGG( AUUAGAUAC) CCCA-CUAU| -GCUC-AGC- CGUAAA-CCU 2521 A--GAUG-UC |CA|------ ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- --a(cuac)a a--uuaGACA 2701 U-C|--C|GC C-CGGG-UAC UACGAGC(-- -AUUA--)GC UUG--AAACC CAAAGGAC-C 2761 UG|ACGGUG- CCUUAGA-CC CCCCUAGA|G GAGCCUGU-U |CUAGA--AC CG(AUAACCC 2821 U--------- ----)CGUUA A-ACCUCACC ACUUCUAGCC ---------- ---------- 2881 (-------ac cc-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGC CUA-UA|UA- 3121 |CC|-GC--C |G------UC GU-CA|G-CU UAC-|CCU(G --UGA)AGG- -----(caa- 3181 uaa)------ a-aGUAAGCA AAA-UGGG-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ----cacaa- 3781 ---------C CCAGAA-CGU C-AGGUCGAG G|UGUA|GCG UAC------- ---------G 3841 A-A-GC-GG- GA-AGA--AA -UGGGCUACA UU--UUCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--u ua---)---- ---------- ---------- UAG-AACAC- 4021 ---------- -----UACGG --AUAUG-CA ACA(------ ---------- ---------- 4081 ---------- ---------- UGAAA----) U-AG-U--GC -U--UGAAG- -GAGGAUUUA 4141 G-u--AGUAA G-AAGGAA(- acaga-gu-- --)GUCCUUU U-GAAc---- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -CC---GGCU 4261 CUGAGG-CG- CGUACACA-C -CGCCCGUCA C-UCU--CCC CU-------- ---------- 4321 ---------- ---------- ---------- ---------- ---------< -gucaaaau- 4381 gcaau-aaag auucuuaaca cnaaagcgcu gaca------ ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- ---------A GGGG-AGG-C AAGUCGUAAC AUGGUAAG-U GUA-CC(GGA 4621 -A)-GU-GC- ACUUGGAUUA AAU------| ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- --------|| ||| // LOCUS mt.C.plu.1 5213 bp RNA RNA 20-OCT-1997 DEFINITION Mitochondrion Couesius plumbeus.; . ACCESSION AF023185 KEYWORDS . SOURCE Mitochondrion Couesius plumbeus. ORGANISM Mitochondrion Couesius plumbeus. REFERENCE 1 (bases 1 to 955) AUTHORS Simons,A.M. and Mayden,R.L. TITLE Spine-Fins: an Enigmatic Group of North American Cyprinid Fishes (Actinopterygii: Cyprinidae) Phylogenetic Relationships of the Creek Chubs and the JOURNAL Cladistics 13 (3) (1997) In press STANDARD No information REFERENCE 2 (bases 1 to 955) AUTHORS Simons,A.M. and Mayden,R.L. TITLE Direct Submission JOURNAL Submitted (08-SEP-1997) Department of Biological Sciences, The University of Alabama, Box 870344, Tuscaloosa, AL 35487-0344, USA STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: AF023185 BASE COUNT 291 a 249 c 221 g 194 t 4258 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --uaaAGGCA 661 (UGG-)U-CC U|GACCU-UA UUA-UCAGCU -C-UAAC-CC |AA-CU--UA -CAC-A-UGC 721 -AAGu----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------cuc c)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------|- gCAACCCCGU GAGUA---UG C|CCU-Uaa- --uc-cc--- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- --(cugcccg -----)---- 1261 ---------- ---------- --gg--ga-- --cGAGGAGC |--------- GGGCAUCA-- 1321 -GGCACGA-- -----(auuu ---------- ---------- ---------- ------)--- 1381 ---UU|---A GCCCA--AGA C|GCCUG-GC --|------- (-cua--)-- -------GC| 1441 CACA------ ---------- ---------- -|-CCCC--( CAAG-)--GG AAuu---C-A 1501 GCA|GUG-AU AAAUAUUAAG C-CAUAAGU( ---------- ----GAAA)A CUUGA-CUC| 1561 A|-GUUA-G- GG-UUA---a ga-------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- GGGCC|-GGU 1921 -AAA-A---C UCGU-G(-CC AGCCACC-GC -GGU-UA)-A ACGAGA|--- -GGC-CCU-- 1981 AGUUG-AUAG U-------ac aaCGGC|GUA AAGGGUGGUU -A-agg---- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 ------a--- -acgcauaac aauaaa--gc -----|CGAA uggcCC-UUU ----GGCU(G 2341 UCAUA)CGCU UC-------u AGGu-guccG AAG------- ---uccaaua -UAC(-GAAA 2401 -)GU|A---- ----gcuuua g-----aaaa gccca----- ccu-gaccCC ACGAA-AGCU 2461 G-AGA---AA CAAACUGGG( AUUAGAUAC) CCCA-CUAU| -GCUC-AGC- CAUAAA-CCU 2521 U--GACG-UC |CA|------ ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- --a(cuac)a a---uUGACG 2701 U-C|--C|GC C-CGGG-UAC UACGAGC(-- -AUUA--)GC UUG--AAACC CAAAAGAC-C 2761 UG|ACGGUG- CCUUAGA-CC CCCCUAGA|G GAGCCUGU-U |CUAGA--AC CG(AUAACCC 2821 U--------- ----)CGUUA A-ACCUCACC ACUUCUAGCC ---------- ---------- 2881 (-------ac cc-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGC CUA-UA|UA- 3121 |CC|-GC--C |G------UC GU-CA|G-CU UAC-|CCU(G --UGA)AGG- -----(caa- 3181 uaa)------ a-aGUAAGCA AAA-UGGG-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ----cacaa- 3781 ---------C CCAGAA-CGU C-AGGUCGAG G|UGUA|GCG UAC------- ---------G 3841 A-A-GU-GG- GA-AGA--AA -UGGGCUACA UU--UUCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--u ua---)---- ---------- ---------- UAG-AAcac- 4021 ---------- -----UACGA --AUAUG-CA ACA(------ ---------- ---------- 4081 ---------- ---------- UGAAA----) U-AG-U--GC -U--UGAAG- -GAGGAUUUA 4141 G-u--AGUAA A-AGGGAA(- gcaga-gu-- --)GUCCUUU U-GAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -CCC--GGCU 4261 CUGAGG-CG- CGUACACA-C -CGCCCGUCA C-UCU--CCC CU-------- ---------- 4321 ---------- ---------- ---------- ---------- ---------< -gucaaaau- 4381 gcaau-auag auaccuaaca ccaacgcgcu gaca------ ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- ---------A GGGG-AGG-C AAGUCGUAAC AUGGUAAG-U GUA-CC(GGA 4621 -A)-GU-GC- ACUUGGAAUA AAU------| ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- --------|| ||| // LOCUS mt.C.plu.2 5213 bp RNA RNA 20-OCT-1997 DEFINITION Mitochondrion Couesius plumbeus.; . ACCESSION AF023185 KEYWORDS . SOURCE Mitochondrion Couesius plumbeus. ORGANISM Mitochondrion Couesius plumbeus. REFERENCE 1 (bases 1 to 955) AUTHORS Simons,A.M. and Mayden,R.L. TITLE Phylogenetic Relationships of the Creek Chubs and the Spine-Fins: an Enigmatic Group of North American Cyprinid Fishes (Actinopterygii: Cyprinidae) JOURNAL Cladistics 13 (3) (1997) In press STANDARD No information REFERENCE 2 (bases 1 to 955) AUTHORS Simons,A.M. and Mayden,R.L. TITLE Direct Submission JOURNAL Submitted (08-SEP-1997) Department of Biological Sciences, The University of Alabama, Box 870344, Tuscaloosa, AL 35487-0344, USA STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: AF023186 BASE COUNT 291 a 249 c 221 g 194 t 4258 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --uaaAGGCA 661 (UGG-)U-CC U|GACCU-UA UUA-UCAGCU -C-UAAC-CC |AA-CU--UA -CAC-A-UGC 721 -AAGu----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------cuc c)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------|- gCAACCCCGU GAGUA---UG C|CCU-Uaa- --uc-cc--- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- --(cugcccg -----)---- 1261 ---------- ---------- --gg--ga-- --cGAGGAGC |--------- GGGCAUCA-- 1321 -GGCACGA-- -----(auuu ---------- ---------- ---------- ------)--- 1381 ---UU|---A GCCCA--AGA C|GCCUG-GC --|------- (-cua--)-- -------GC| 1441 CACA------ ---------- ---------- -|-CCCC--( CAAG-)--GG AAuu---C-A 1501 GCA|GUG-AU AAAUAUUAAG C-CAUAAGU( ---------- ----GAAA)A CUUGA-CUC| 1561 A|-GUUA-G- GG-UUA---a ga-------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- GGGCC|-GGU 1921 -AAA-A---C UCGU-G(-CC AGCCACC-GC -GGU-UA)-A ACGAGA|--- -GGC-CCU-- 1981 AGUUG-AUAG U-------ac aaCGGC|GUA AAGGGUGGUU -A-agg---- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 ------a--- -acgcauaac aauaaa--gc -----|CGAA uggcCC-UUU ----GGCU(G 2341 UCAUA)CGCU UC-------u AGGu-guccG AAG------- ---uccaaua -UAC(-GAAA 2401 -)GU|A---- ----gcuuua g-----aaaa gccca----- ccu-gaccCC ACGAA-AGCU 2461 G-AGA---AA CAAACUGGG( AUUAGAUAC) CCCA-CUAU| -GCUC-AGC- CAUAAA-CCU 2521 U--GACG-UC |CA|------ ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- --a(cuac)a a---uUGACG 2701 U-C|--C|GC C-CGGG-UAC UACGAGC(-- -AUUA--)GC UUG--AAACC CAAAAGAC-C 2761 UG|ACGGUG- CCUUAGA-CC CCCCUAGA|G GAGCCUGU-U |CUAGA--AC CG(AUAACCC 2821 U--------- ----)CGUUA A-ACCUCACC ACUUCUAGCC ---------- ---------- 2881 (-------ac cc-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGC CUA-UA|UA- 3121 |CC|-GC--C |G------UC GU-CA|G-CU UAC-|CCU(G --UGA)AGG- -----(caa- 3181 uaa)------ a-aGUAAGCA AAA-UGGG-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ----cacaa- 3781 ---------C CCAGAA-CGU C-AGGUCGAG G|UGUA|GCG UAC------- ---------G 3841 A-A-GU-GG- GA-AGA--AA -UGGGCUACA UU--UUCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--u ua---)---- ---------- ---------- UAG-AAcac- 4021 ---------- -----UACGA --AUAUG-CA ACA(------ ---------- ---------- 4081 ---------- ---------- UGAAA----) U-AG-U--GC -U--UGAAG- -GAGGAUUUA 4141 G-u--AGUAA A-AGGGAA(- gcaga-gu-- --)GUCCUUU U-GAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -CCC--GGCU 4261 CUGAGG-CG- CGUACACA-C -CGCCCGUCA C-UCU--CCC CU-------- ---------- 4321 ---------- ---------- ---------- ---------- ---------< -gucaaaau- 4381 gcaau-auag auaccuaaca ccaacgcgcu gaca------ ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- ---------A GGGG-AGG-C AAGUCGUAAC AUGGUAAG-U GUA-CC(GGA 4621 -A)-GU-GC- ACUUGGAAUA AAU------| ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- --------|| ||| // LOCUS mt.C.venus 5213 bp RNA RNA 20-OCT-1997 DEFINITION Mitochondrion Cyprinella venusta.; . ACCESSION AF023187 KEYWORDS . SOURCE Mitochondrion Cyprinella venusta. ORGANISM Mitochondrion Cyprinella venusta. REFERENCE 1 (bases 1 to 954) AUTHORS Simons,A.M. and Mayden,R.L. TITLE Fishes (Actinopterygii: Cyprinidae) Phylogenetic Relationships of the Creek Chubs and the Spine-Fins: an Enigmatic Group of North American Cyprinid JOURNAL Cladistics 13 (3) (1997) In press STANDARD No information REFERENCE 2 (bases 1 to 954) AUTHORS Simons,A.M. and Mayden,R.L. TITLE Direct Submission JOURNAL Submitted (08-SEP-1997) Department of Biological Sciences, The University of Alabama, Box 870344, Tuscaloosa, AL 35487-0344, USA STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: AF023187 BASE COUNT 285 a 258 c 230 g 181 t 4259 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --caaAGGCA 661 (UGG-)U-CC C|GACCU-UA CCA-UCAGCU -C-UAAC-CC |AA-CU--UA -CAC-A-UGC 721 -AAGu----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------cuc c)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------|- gCAACCCCGU GAGUA---GG C|CCU-Uaa- --uc-cc--- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- --(cugcccg -----)---- 1261 ---------- ---------- --gg--ga-- --cGAGGAGC |--------- AGGCAUCA-- 1321 -GGCACAA-- -----(aucu ---------- ---------- ---------- ------)--- 1381 ---UU|---G GCCCA--AGA C|GCCGA-GC --|------- (-cca--)-- -------GC| 1441 CACA------ ---------- ---------- -|-CCCC--( CAAG-)--GG AAuu---C-A 1501 GCA|GUG-AU AAAUAUUAAG C-CAUAAGU( ---------- ----GAAA)A CUUGA-CUU| 1561 A|-GUCA-G- GG-CUA---a ga-------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- GGGCC|-GGU 1921 -AAA-A---C UCGU-G(-CC AGCCGCC-GC -GGU-UA)-A ACGAGA|--- -GGC-CCU-- 1981 AGUUG-AUGG A-------ac aaCGGC|GUA AAGGGUGGUU -A-agg---- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 ------a--- -uagugaaac aauaaa--gu -----|CGAA uggcCC-UUU ----GGCU(G 2341 UCAUA)CGCU UC-------u GGGa-gccuG AAG------- ---cccacua -UAC(-GAAA 2401 -)GU|A---- ----gcuuua a-----cagc gucca----- ccu-gaccCC ACGAA-AACU 2461 G-AGA---AA CAAACUGGG( AUUAGAUAC) CCCA-CUAU| -GCUC-AGU- UAUAAA-CCC 2521 A--GACG-UC |CA|------ ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- --a(cuac)a a---uAGGCG 2701 U-C|--C|GC C-UGGG-UAC UACGAGC(-- -AUUA--)GC UUG--AAACC CAAAGGAC-C 2761 UG|ACGGUG- CCUCAGA-CC CCCCUAGA|G GAGCCUGU-U |CUAGA--AC CG(AUAACCC 2821 C--------- ----)CGUUG A-ACCUCACC GCUUCUAGCC ---------- ---------- 2881 (-------au cc-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGC CUA-UA|UA- 3121 |CC|-GC--C |G------UC GU-CA|G-CU UAC-|CCU(A --UGA)AGG- -----(uaa- 3181 uaa)------ a-aGUAAGCA AGA-UGGG-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ----cacaa- 3781 ---------C CCAGAA-CGU C-AGGUCGAG G|UGUA|GCG UAC------- ---------G 3841 G-A-GC-GG- GA-AGA--AA -UGGGCUACA UU--UUCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--c aa---)---- ---------- ---------- UAG-AAcac- 4021 ---------- -----UACGG --AUUUG-CA ACA(------ ---------- ---------- 4081 ---------- ---------- UGAAA----) U-AG-U--GC -U--UGAAG- -GAGGAUUUA 4141 G-a--AGUAA A-GAGGAA(- gcagc-gu-- --)GUCCUCU U-GAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -CCC--GGCU 4261 CUGAGG-CG- CGUACACA-C -CGCCCGUCA C-UCU--CCC CU-------- ---------- 4321 ---------- ---------- ---------- ---------- ---------< -gucgaaau- 4381 gcaau-caag uuaccuaaca ccaaagcucu gaca------ ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- ---------A GGGG-AGG-C AAGACGUAAC AUGGUAAG-U GUA-CC(GGA 4621 -A)-GU-GC- ACUUGGAUAA AU-------| ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- --------|| ||| // LOCUS mt.E.acros 5213 bp RNA RNA 02-JUN-1998 DEFINITION Mitochondrion Eremichthys acros.; . ACCESSION AF0384 1 KEYWORDS . SOURCE Mitochondrion Eremichthys acros. ORGANISM Mitochondrion Eremichthys acros. REFERENCE 1 (bases 1 to 2655) AUTHORS Simons,A.M. and Mayden,R.L. TITLE Phylogenetic Relationships of the Western North American Phoxinins (Actinopterygii: Cyprinidae) as Inferred from Mitochondrial 12S and 16S Ribosomal RNA Sequences JOURNAL Mol. Phylogenet. Evol. (1998) In press STANDARD No information REFERENCE 2 (bases 1 to 2655) AUTHORS Simons,A.M. and Mayden,R.L. TITLE Direct Submission JOURNAL Submitted (15-DEC-1997) Department of Biological Sciences, The University of Alabama, Box 870344, Tuscaloosa, AL 35487-0344, USA STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: AF038471 BASE COUNT 298 a 240 c 221 g 197 t 4257 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --uaaAGGCA 661 (UGG-)U-CC U|GACCU-UA UUA-UCAGCU -C-UAAC-CC |AA-CU--UA -CAC-A-UGC 721 -AAGu----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------cuc c)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------|- gCAGUCCUGU GAGUA---CG C|CCU-Uaa- --uc-cc--- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- --(cugcccg -----)---- 1261 ---------- ---------- --gg--ga-- --cGAGGAGC |--------- GGGCAUCA-- 1321 -GGCACAA-- -----(auuu ---------- ---------- ---------- ------)--- 1381 ---UU|---A GCCCA--AGA C|GCCUG-GC --|------- (-caa--)-- -------GC| 1441 CACA------ ---------- ---------- -|-CCCC--( CAAG-)--GG AAuu---C-A 1501 GCA|GUG-AU AAAUAUUAAG C-CAUAAGU( ---------- ----GAAA)A CUUGA-CUC| 1561 A|-GUUA-G- GG-UUA---a ga-------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- GGGCC|-GGU 1921 -AAA-A---C UCGU-G(-CC AGCCACC-GC -GGU-UA)-G ACGAGA|--- -GGC-CCU-- 1981 AGUUA-AUAA U-------ac aaCGGC|GUA AAGGGUGGUU -A-agg---- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 ------a--- -aagca-aac aauaaa--gc -----|CGAA uggcCC-UUU ----GGCU(G 2341 UCAUA)CGCU UC-------u AGGu-guccG AAG------- ---cccaaua -UAC(-GAAA 2401 -)GU|A---- ----gcuuua g-----gaag gccca----- ccu-gacaCC ACGAA-AGCU 2461 G-AGA---AA CAAACUGGG( AUUAGAUAC) CCCA-CUAU| -GCUC-AGC- CAUAAA-CCU 2521 A--GAUG-UC |AA|------ ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- -ua(uuac)a a-uuA-GAUA 2701 U-C|--C|GC C-CGGG-UAC UACGAGC(-- -AUUA--)GC UUG--AAACC CAAAGGAC-C 2761 UG|ACGGUG- CCUUAGA-CC CCCCUAGA|G GAGCCUGU-U |CUAGA--AC CG(AUAACCC 2821 U--------- ----)CGUUA A-ACCUCACC ACUUCUAGCC ---------- ---------- 2881 (-------ac cc-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGC CUA-UA|UA- 3121 |CC|-GC--C |G------UC GU-CA|G-CU UAC-|CCU(G --UGA)AGG- -----(caa- 3181 uaa)------ a-aGUAAGCA AAA-UGGG-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ----cacaa- 3781 ---------C CCAGAA-CGU C-AGGUCGAG G|UGUA|GCG CAC------- ---------G 3841 G-A-GU-GG- GA-AGA--AA -UGGGCUACA UU--UUCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--u ua---)---- ---------- ---------- UAG-AAuac- 4021 ---------- -----UACGA --ACAUC-GA ACA(------ ---------- ---------- 4081 ---------- ---------- UGAAA----) U-AG-U--GC -U--UGAAG- -GAGGAUUUA 4141 G-U--AGUAA A-AAGGAA(- acaga-gu-- --)GUCCUUU U-GAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -CCC--GGCU 4261 CUGAGG-CG- CGUACACA-C -CGCCCGUCA C-UCU--CCC CU-------- ---------- 4321 ---------- ---------- ---------- ---------- ---------< -gucaaaau- 4381 gcaau-aaag auauuuaaca ucaaagcgcu gaca------ ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- ---------A GGGG-AGG-C AAGUCGUAAC AUGGUAAG-U GUA-CC(GGA 4621 -A)-GU-GC- ACUUGGAUUA AAU------| ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- --------|| ||| // LOCUS mt.G.atrar 5213 bp RNA RNA 02-JUN-1998 DEFINITION Mitochondrion Gila atraria.; . ACCESSION AF0384 2 KEYWORDS . SOURCE Mitochondrion Gila atraria. ORGANISM Mitochondrion Gila atraria. REFERENCE 1 (bases 1 to 2718) AUTHORS Simons,A.M. and Mayden,R.L. TITLE Mitochondrial 12S and 16S Ribosomal RNA Sequences Phylogenetic Relationships of the Western North American Phoxinins (Actinopterygii: Cyprinidae) as Inferred from JOURNAL Mol. Phylogenet. Evol. (1998) In press STANDARD No information REFERENCE 2 (bases 1 to 2718) AUTHORS Simons,A.M. and Mayden,R.L. TITLE Direct Submission JOURNAL Submitted (15-DEC-1997) Department of Biological Sciences, The University of Alabama, Box 870344, Tuscaloosa, AL 35487-0344, USA STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: AF038472 BASE COUNT 297 a 246 c 220 g 192 t 4258 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --uaaAGGCA 661 (UGG-)U-CC U|GACCU-UA UUA-UCAGCU -C-UAAC-CC |AA-CU--UA -CAC-A-UGC 721 -AAGu----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------cuc c)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------|- gCAGUCCUGU GAGUA---CG C|CCU-Uaa- --uc-cc--- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- --(cugcccg -----)---- 1261 ---------- ---------- --gg--ga-- --cGAGGAGC |--------- GGGCAUCA-- 1321 -GGCACAA-- -----(auuu ---------- ---------- ---------- ------)--- 1381 ---UU|---A GCCCA--AGA C|GCCUG-GC --|------- (-caa--)-- -------GC| 1441 CACA------ ---------- ---------- -|-CCCC--( CAAG-)--GG AAuu---C-A 1501 GCA|GUG-AU AAAUAUUAAG C-CAUGAGU( ---------- ----GAAA)A CUUGA-CUC| 1561 A|-GUCA-G- GG-UUA---a ga-------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- GGGCC|-GGU 1921 -AAA-A---C UCGU-G(-CC AGCCACC-GC -GGU-UA)-A ACGAGA|--- -GGC-CCU-- 1981 AGUUG-AUAG U-------ac aaCGGC|GUA AAGGGUGGUU -A-agg---- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 ------a--- -aagca-aac aauaaa--gu -----|CAAA uggcCC-UUU ----GGCU(G 2341 UCAUA)CGCU UC-------u AGGu-guccG AAG------- ---cccaaua -UAC(-GAAA 2401 -)GU|A---- ----gcuuua g-----aaaa gccca----- ccu-gacaCC ACGAA-AGCU 2461 G-AGA---AA CAAACUGGG( AUUAGAUAC) CCCA-CUAU| -GCUC-AGC- CAUAAA-CCU 2521 A--GAUG-UC |CA|------ ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- --a(cuac)a a-uuA-GCCA 2701 U-C|--C|GC C-CGGG-UAC UACGAGC(-- -AUUA--)GC UUG--AAACC CAAAGGAC-C 2761 UG|ACGGUG- CCUUAGA-CC CCCCUAGA|G GAGCCUGU-U |CUAGA--AC CG(AUAACCC 2821 U--------- ----)CGUUA A-ACCUCACC ACUUCUAGCC ---------- ---------- 2881 (-------au cc-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGC CUA-UA|UA- 3121 |CC|-GC--C |G------UC GU-CA|G-CU UAC-|CCU(G --UGA)AGG- -----(caa- 3181 uaa)------ a-aGUAAGCA AAA-UGGG-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ----cacaa- 3781 ---------C CCAGAA-CGU C-AGGUCGAG G|UGUA|GCG UAC------- ---------G 3841 A-A-GC-GG- GA-AGA--AA -UGGGCUACA UU--UUCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--u ua---)---- ---------- ---------- UAG-AAcac- 4021 ---------- -----UACGG --ACAUG-CA ACA(------ ---------- ---------- 4081 ---------- ---------- UGAAA----) U-AG-U--GC -U--UGAAG- -GAGGAUUUA 4141 G-U--AGUAA A-AAGGAA(- acaga-gu-- --)GUCCUUU U-GAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -CCC--GGCU 4261 CUGAGG-CG- CGUACACA-C -CGCCCGUCA C-UCU--CCC CU-------- ---------- 4321 ---------- ---------- ---------- ---------- ---------< -gucaaaau- 4381 gcaau-aaag auacuuaaca ccaaagcgcu gaca------ ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- ---------A GGGG-AGG-C AAGUCGUAAC AUGGUAAG-U GUA-CC(GGA 4621 -A)-GU-GC- ACUUGGAUUA AAU------| ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- --------|| ||| // LOCUS mt.G.coe.1 5213 bp RNA RNA 02-JUN-1998 DEFINITION Mitochondrion Gila coerulea.; . ACCESSION AF0384 3 KEYWORDS . SOURCE Mitochondrion Gila coerulea. ORGANISM Mitochondrion Gila coerulea. REFERENCE 1 (bases 1 to 2716) AUTHORS Simons,A.M. and Mayden,R.L. TITLE Phylogenetic Relationships of the Western North American Phoxinins (Actinopterygii: Cyprinidae) as Inferred from Mitochondrial 12S and 16S Ribosomal RNA Sequences JOURNAL Mol. Phylogenet. Evol. (1998) In press STANDARD No information REFERENCE 2 (bases 1 to 2716) AUTHORS Simons,A.M. and Mayden,R.L. TITLE Direct Submission JOURNAL Submitted (15-DEC-1997) Department of Biological Sciences, The University of Alabama, Box 870344, Tuscaloosa, AL 35487-0344, USA STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: AF038473 BASE COUNT 298 a 246 c 220 g 191 t 4258 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --uaaAGGCA 661 (UGG-)U-CC U|GACCU-UA UUA-UCAGCU -C-UAAC-CC |AA-CU--UA -CAC-A-UGC 721 -AAGu----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------cuc c)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------|- gCAGUCCUGU GAGUA---CG C|CCU-Uaa- --uc-cc--- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- --(cugcccg -----)---- 1261 ---------- ---------- --gg--ga-- --cGAGGAGC |--------- GGGCAUCA-- 1321 -GGCACAA-- -----(auuu ---------- ---------- ---------- ------)--- 1381 ---UU|---A GCCCA--AGA C|GCCUG-GC --|------- (-caa--)-- -------GC| 1441 CACA------ ---------- ---------- -|-CCCC--( CAAG-)--GG AAuu---C-A 1501 GCA|GUG-AU AAAUAUUAAG C-CAUGAGU( ---------- ----GAAA)A CUUGA-CUC| 1561 A|-GUCA-G- GG-UUA---a ga-------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- GGGCC|-GGU 1921 -AAA-A---C UCGU-G(-CC AGCCACC-GC -GGU-UA)-A ACGAGA|--- -GGC-CCU-- 1981 AGUUG-AUAG U-------ac aaCGGC|GUA AAGGGUGGUU -A-agg---- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 ------a--- -aagca-aac aauaaa--gc -----|CAAA uggcCC-UUU ----GGCU(G 2341 UCAUA)CGCU UC-------u AGGu-guccG AAG------- ---cccaaua -UAC(-GAAA 2401 -)GU|A---- ----gcuuua g-----aaga gccca----- ccu-gacaCC ACGAA-AGCU 2461 A-AGA---AA CAAACUGGG( AUUAGAUAC) CCCA-CUAU| -GCUC-AGC- CAUAAA-CCU 2521 A--GAUG-UC |CA|------ ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- --a(cuac)a a-uuA-GAUA 2701 U-C|--C|GC C-CGGG-UAC UACGAGC(-- -AUUA--)GC UUG--AAACC CAAAGGAC-C 2761 UG|ACGGUG- CCUUAGA-CC CCCCUAGA|G GAGCCUGU-U |CUAGA--AC CG(AUAACCC 2821 U--------- ----)CGUUA A-ACCUCACC ACUUCUAGCC ---------- ---------- 2881 (-------ac cc-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGC CUA-UA|UA- 3121 |CC|-GC--C |G------UC GU-CA|G-CU UAC-|CCU(G --UGA)AGG- -----(caa- 3181 uaa)------ a-aGUAAGCA AAA-UGGG-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ----cacaa- 3781 ---------C CCAGAA-CGU C-AGGUCGAG G|UGUA|GCG UAC------- ---------G 3841 A-A-GC-GG- GA-AGA--AA -UGGGCUACA UU--UUCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--u ua---)---- ---------- ---------- UAG-AAcac- 4021 ---------- -----UACGG --ACAUG-CA ACA(------ ---------- ---------- 4081 ---------- ---------- UGAAA----) U-AG-U--GC -U--UGAAG- -GAGGAUUUA 4141 G-U--AGUAA A-AAGGAA(- acaga-gu-- --)GUCCUUU U-GAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -CCC--GGCU 4261 CUGAGG-CG- CGUACACA-C -CGCCCGUCA C-UCU--CCC CU-------- ---------- 4321 ---------- ---------- ---------- ---------- ---------< -gucaaaau- 4381 gcaau-aaag auacuuaaca ccaaagcgcu gaca------ ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- ---------A GGGG-AGG-C AAGUCGUAAC AUGGUAAG-U GUA-CC(GGA 4621 -A)-GU-GC- ACUUGGAUUA AAU------| ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- --------|| ||| // LOCUS mt.G.coe.2 5213 bp RNA RNA 02-JUN-1998 DEFINITION Mitochondrion Gila coerulea.; . ACCESSION AF0384 4 KEYWORDS . SOURCE Mitochondrion Gila coerulea. ORGANISM Mitochondrion Gila coerulea. REFERENCE 1 (bases 1 to 2716) AUTHORS Simons,A.M. and Mayden,R.L. TITLE Phylogenetic Relationships of the Western North American Phoxinins (Actinopterygii: Cyprinidae) as Inferred from Mitochondrial 12S and 16S Ribosomal RNA Sequences JOURNAL Mol. Phylogenet. Evol. (1998) In press STANDARD No information REFERENCE 2 (bases 1 to 2716) AUTHORS Simons,A.M. and Mayden,R.L. TITLE Direct Submission JOURNAL Submitted (15-DEC-1997) Department of Biological Sciences, The University of Alabama, Box 870344, Tuscaloosa, AL 35487-0344, USA STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: AF038474 BASE COUNT 298 a 246 c 221 g 190 t 4258 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --uaaAGGCA 661 (UGG-)U-CC U|GACCU-UA UUA-UCAGCU -C-UAAC-CC |AA-CU--UA -CAC-A-UGC 721 -AAGu----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------cuc c)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------|- gCAGUCCUGU GAGUA---CG C|CCU-Uaa- --uc-cc--- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- --(cugcccg -----)---- 1261 ---------- ---------- --gg--ga-- --cGAGGAGC |--------- GGGCAUCA-- 1321 -GGCACAA-- -----(auuu ---------- ---------- ---------- ------)--- 1381 ---UU|---A GCCCA--AGA C|GCCUG-GC --|------- (-caa--)-- -------GC| 1441 CACA------ ---------- ---------- -|-CCCC--( CAAG-)--GG AAuu---C-A 1501 GCA|GUG-AU AAAUAUUAAG C-CAUGAGU( ---------- ----GAAA)A CUUGA-CUC| 1561 A|-GUCA-G- GG-UUA---a ga-------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- GGGCC|-GGU 1921 -AAA-A---C UCGU-G(-CC AGCCACC-GC -GGU-UA)-A ACGAGA|--- -GGC-CCU-- 1981 AGUUG-AUAG U-------ac aaCGGC|GUA AAGGGUGGUU -A-agg---- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 ------a--- -aagca-aac aauaaa--gc -----|CAAA uggcCC-UUU ----GGCU(G 2341 UCAUA)CGCU UC-------u AGGa-guccG AAG------- ---cccaaua -UAC(-GAAA 2401 -)GU|A---- ----gcuuua g-----aaga gccca----- ccu-gacaCC ACGAA-AGCU 2461 G-AGA---AA CAAACUGGG( AUUAGAUAC) CCCA-CUAU| -GCUC-AGC- CAUAAA-CCU 2521 A--GAUG-UC |CA|------ ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- --a(cuac)a a-uuA-GAUA 2701 U-C|--C|GC C-CGGG-UAC UACGAGC(-- -AUUA--)GC UUG--AAACC CAAAGGAC-C 2761 UG|ACGGUG- CCUUAGA-CC CCCCUAGA|G GAGCCUGU-U |CUAGA--AC CG(AUAACCC 2821 U--------- ----)CGUUA A-ACCUCACC ACUUCUAGCC ---------- ---------- 2881 (-------ac cc-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGC CUA-UA|UA- 3121 |CC|-GC--C |G------UC GU-CA|G-CU UAC-|CCU(G --UGA)AGG- -----(caa- 3181 uaa)------ a-aGUAAGCA AAA-UGGG-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ----cacaa- 3781 ---------C CCAGAA-CGU C-AGGUCGAG G|UGUA|GCG UAC------- ---------G 3841 A-A-GC-GG- GA-AGA--AA -UGGGCUACA UU--UUCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--u ua---)---- ---------- ---------- UAG-AAcac- 4021 ---------- -----UACGG --ACAUG-CA ACA(------ ---------- ---------- 4081 ---------- ---------- UGAAA----) U-AG-U--GC -U--UGAAG- -GAGGAUUUA 4141 G-U--AGUAA A-AAGGAA(- acaga-gu-- --)GUCCUUU U-GAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -CCC--GGCU 4261 CUGAGG-CG- CGUACACA-C -CGCCCGUCA C-UCU--CCC CU-------- ---------- 4321 ---------- ---------- ---------- ---------- ---------< -gucaaaau- 4381 gcaau-aaag auacuuaaca ccaaagcgcu gaca------ ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- ---------A GGGG-AGG-C AAGUCGUAAC AUGGUAAG-U GUA-CC(GGA 4621 -A)-GU-GC- ACUUGGAUUA AAU------| ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- --------|| ||| // LOCUS mt.G.consp 5213 bp RNA RNA 02-JUN-1998 DEFINITION Mitochondrion Gila conspersa.; . ACCESSION AF0384 5 KEYWORDS . SOURCE Mitochondrion Gila conspersa. ORGANISM Mitochondrion Gila conspersa. REFERENCE 1 (bases 1 to 2718) AUTHORS Simons,A.M. and Mayden,R.L. TITLE Mitochondrial 12S and 16S Ribosomal RNA Sequences Phylogenetic Relationships of the Western North American Phoxinins (Actinopterygii: Cyprinidae) as Inferred from JOURNAL Mol. Phylogenet. Evol. (1998) In press STANDARD No information REFERENCE 2 (bases 1 to 2718) AUTHORS Simons,A.M. and Mayden,R.L. TITLE Direct Submission JOURNAL Submitted (15-DEC-1997) Department of Biological Sciences, The University of Alabama, Box 870344, Tuscaloosa, AL 35487-0344, USA STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: AF038475 BASE COUNT 296 a 249 c 219 g 191 t 4258 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --uaaAGGCA 661 (UGG-)U-CC U|GACCU-UA UUA-UCAGCU -C-UAAC-CC |AA-CU--UA -CAC-A-UGC 721 -AAGu----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------cuc c)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------|- gCAAUCCUGU GAGUA---CG C|CCU-Uaa- --uc-cc--- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- --(cugcccg -----)---- 1261 ---------- ---------- --gg--ga-- --cGAGGAGC |--------- GGGCAUCA-- 1321 -GGCACAA-- -----(auuu ---------- ---------- ---------- ------)--- 1381 ---UU|---A GCCCA--AGA C|GCCUG-GC --|------- (-caa--)-- -------GC| 1441 CACA------ ---------- ---------- -|-CCCC--( CAAG-)--GG AAuu---C-A 1501 GCA|GUG-AU AAAUAUUAAG C-CAUGAGU( ---------- ----GAAA)A CUUGA-CUC| 1561 A|-GUCA-G- GG-UUA---a ga-------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- GGGCC|-GGU 1921 -AAA-A---C UCGU-G(-CC AGCCACC-GC -GGU-UA)-A ACGAGA|--- -GGC-CCU-- 1981 AGUUG-AUAG U-------ac aaCGGC|GUA AAGGGUGGUU -A-agg---- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 ------a--- -acgca-aac aauaaa--gc -----|CAAA uggcCC-UUU ----GGCU(G 2341 UCAUA)CGCU UC-------u AGGu-guccG AAG------- ---cccaaua -UAC(-GAAA 2401 -)GU|A---- ----gcuuua g-----aaaa gccca----- ccu-gacaCC ACGAA-AGCU 2461 G-AGA---AA CAAACUGGG( AUUAGAUAC) CCCA-CUAU| -GCUC-AGC- CAUAAA-CCU 2521 A--GAUG-UC |CA|------ ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- --a(cuac)a a-uuA-GCCA 2701 U-C|--C|GC C-CGGG-UAC UACGAGC(-- -AUUA--)GC UUG--AAACC CAAAGGAC-C 2761 UG|ACGGUG- CCUUAGA-CC CCCCUAGA|G GAGCCUGU-U |CUAGA--AC CG(AUAACCC 2821 U--------- ----)CGUUA A-ACCUCACC ACUUCUAGCC ---------- ---------- 2881 (-------au cc-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGC CUA-UA|UA- 3121 |CC|-GC--C |G------UC GU-CA|G-CU UAC-|CCU(G --UGA)AGG- -----(caa- 3181 uaa)------ a-aGUAAGCA AAA-UGGG-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ----cacaa- 3781 ---------C CCAGAA-CGU C-AGGUCGAG G|UGUA|GCG UAC------- ---------G 3841 A-A-GC-GG- GA-AGA--AA -UGGGCUACA UU--UUCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--u ua---)---- ---------- ---------- UAG-AAcac- 4021 ---------- -----UACGG --ACAUG-CA ACA(------ ---------- ---------- 4081 ---------- ---------- UGAAA----) U-AG-U--GC -U--UGAAG- -GAGGAUUUA 4141 G-U--AGUAA A-AAGGAA(- acagc-gu-- --)GUCCUUU U-GAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -CCC--GGCU 4261 CUGAGG-CG- CGUACACA-C -CGCCCGUCA C-UCU--CCC CU-------- ---------- 4321 ---------- ---------- ---------- ---------- ---------< -gucaaaau- 4381 gcagu-aaag auacuuaaca ccaaagcacu gaca------ ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- ---------A GGGG-AGG-C AAGUCGUAAC AUGGUAAG-U GUA-CC(GGA 4621 -A)-GU-GC- ACUUGGAUUA AAU------| ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- --------|| ||| // LOCUS mt.G.cypha 5213 bp RNA RNA 20-OCT-1997 DEFINITION Mitochondrion Gila cypha.; . ACCESSION AF023188 KEYWORDS . SOURCE Mitochondrion Gila cypha. ORGANISM Mitochondrion Gila cypha. REFERENCE 1 (bases 1 to 954) AUTHORS Simons,A.M. and Mayden,R.L. TITLE Phylogenetic Relationships of the Creek Chubs and the Spine-Fins: an Enigmatic Group of North American Cyprinid Fishes (Actinopterygii: Cyprinidae) JOURNAL Cladistics 13 (3) (1997) In press STANDARD No information REFERENCE 2 (bases 1 to 954) AUTHORS Simons,A.M. and Mayden,R.L. TITLE Direct Submission JOURNAL Submitted (08-SEP-1997) Department of Biological Sciences, The University of Alabama, Box 870344, Tuscaloosa, AL 35487-0344, USA STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: AF023188 BASE COUNT 297 a 246 c 219 g 192 t 4259 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --uaaAGGCA 661 (UGG-)U-CC U|GACCU-UA UUA-UCAGCU -C-UAAC-CC |AA-CU--UA -CAC-A-UGC 721 -AAGu----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------cuc c)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------|- gCAGUCCUGU GAGUA---CG C|CCU-Uaa- --uc-cc--- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- --(cugcccg -----)---- 1261 ---------- ---------- --gg--ga-- --cGAGGAGC |--------- GGGCAUCA-- 1321 -GGCACAA-- -----(auuu ---------- ---------- ---------- ------)--- 1381 ---UU|---A GCCCA--AGA C|GCCUG-GC --|------- (-caa--)-- -------GC| 1441 CACA------ ---------- ---------- -|-CCCC--( CAAG-)--GA A-uu---C-A 1501 GCA|GUG-AU AAAUAUUAAG C-CAUGAGU( ---------- ----GAAA)A CUUGA-CUC| 1561 A|-GUCA-G- GG-UUA---a ga-------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- GGGCC|-GGU 1921 -AAA-A---C UCGU-G(-CC AGCCACC-GC -GGU-UA)-A ACGAGA|--- -GGC-CCU-- 1981 AGUUG-AUAG U-------ac aaCGGC|GUA AAGGGUGGUU -A-agg---- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 ------a--- --aagcaaac aauaaa--gu -----|CAAA uggcCC-UUU ----GGCU(G 2341 UCAUA)CGCU UC-------u AGGu-guccG AAG------- ---cccaaua -UAC(-GAAA 2401 -)GU|A---- ----gcuuua g-----aaaa gccca----- ccu-gacaCC ACGAA-AGCU 2461 G-AGA---AA CAAACUGGG( AUUAGAUAC) CCCA-CUAU| -GCUC-AGC- CAUAAA-CCU 2521 A--GAUG-UC |CA|------ ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- --a(cuac)a a--uuaGCCA 2701 U-C|--C|GC C-CGGG-UAC UACGAGC(-- -AUUA--)GC UUG--AAACC CAAAGGAC-C 2761 UG|ACGGUG- CCUUAGA-CC CCCCUAGA|G GAGCCUGU-U |CUAGA--AC CG(AUAACCC 2821 U--------- ----)CGUUA A-ACCUCACC ACUUCUAGCC ---------- ---------- 2881 (-------au cc-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGC CUA-UA|UA- 3121 |CC|-GC--C |G------UC GU-CA|G-CU UAC-|CCU(G --UGA)AGG- -----(caa- 3181 uaa)------ a-aGUAAGCA AAA-UGGG-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ----cacaa- 3781 ---------C CCAGAA-CGU C-AGGUCGAG G|UGUA|GCG UAC------- ---------G 3841 A-A-GC-GG- GA-AGA--AA -UGGGCUACA UU--UUCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--u ua---)---- ---------- ---------- UAG-AAcac- 4021 ---------- -----UACGG --ACAUG-CA ACA(------ ---------- ---------- 4081 ---------- ---------- UGAAA----) U-AG-U--GC -U--UGAAG- -GAGGAUUUA 4141 G-u--AGUAA A-AAGGAA(- acaga-gu-- --)GUCCUUU U-GAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -CCC--GGCU 4261 CUGAGG-CG- CGUACACA-C -CGCCCGUCA C-UCU--CCC CU-------- ---------- 4321 ---------- ---------- ---------- ---------- ---------< -gucaaaau- 4381 gcaau-aaag auacuuaaca ccaaagcgcu gaca------ ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- ---------A GGGG-AGG-C AAGUCGUAAC AUGGUAAG-U GUA-CC(GGA 4621 -A)-GU-GC- ACUUGGAUUA AAU------| ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- --------|| ||| // LOCUS mt.G.ditae 5213 bp RNA RNA 02-JUN-1998 DEFINITION Mitochondrion Gila ditaenia.; . ACCESSION AF0384 6 KEYWORDS . SOURCE Mitochondrion Gila ditaenia. ORGANISM Mitochondrion Gila ditaenia. REFERENCE 1 (bases 1 to 2720) AUTHORS Simons,A.M. and Mayden,R.L. TITLE Mitochondrial 12S and 16S Ribosomal RNA Sequences Phylogenetic Relationships of the Western North American Phoxinins (Actinopterygii: Cyprinidae) as Inferred from JOURNAL Mol. Phylogenet. Evol. (1998) In press STANDARD No information REFERENCE 2 (bases 1 to 2720) AUTHORS Simons,A.M. and Mayden,R.L. TITLE Direct Submission JOURNAL Submitted (15-DEC-1997) Department of Biological Sciences, The University of Alabama, Box 870344, Tuscaloosa, AL 35487-0344, USA STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: AF038476 BASE COUNT 294 a 248 c 223 g 190 t 4258 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --uaaAGGCA 661 (UGG-)U-CC U|GACCU-UA UUA-UCAGCU -C-UAAC-CC |AA-CU--UA -CAC-A-UGC 721 -AAGu----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------cuc c)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------|- gCAGUCCUGU GAGUA---CG C|CCU-Uaa- --uc-cc--- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- --(cugcccg -----)---- 1261 ---------- ---------- --gg--ga-- --cGAGGAGC |--------- GGGCAUCA-- 1321 -GGCACAA-- -----(guuu ---------- ---------- ---------- ------)--- 1381 ---UU|---A GCCCA--AGA C|GCCUG-GC --|------- (-caa--)-- -------GC| 1441 CACA------ ---------- ---------- -|-CCCC--( CAAG-)--GG AAuu---C-A 1501 GCA|GUG-AU AAAUAUUAAG C-CAUGAGU( ---------- ----GAAA)A CUCGA-CUC| 1561 A|-GUUA-G- GG-UUA---a ga-------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- GGGCC|-GGU 1921 -AAA-A---C UCGU-G(-CC AGCCACC-GC -GGU-UA)-A ACGAGA|--- -GGC-CCU-- 1981 AGUUG-AUAU U-------ac aaCGGC|GUA AAGGGUGGUU -A-agg---- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 ------a--- -aagca-agc aauaaa--gc -----|CGAA uggcCC-UUU ----GGCU(G 2341 UCAUA)CGCU UC-------u AGGu-guccG AAG------- ---cccaaua -UAC(-GAAA 2401 -)GU|A---- ----gcuuua g-----aaaa gccca----- ccu-gacaCC ACGAA-AGCU 2461 G-AGA---AA CAAACUGGG( AUUAGAUAC) CCCA-CUAU| -GCUC-AGC- CAUAAA-CCU 2521 A--GAUG-UG |CA|------ ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- --a(cuac)a a-uuA-GCCA 2701 U-C|--C|GC C-CGGG-UAC UACGAGC(-- -AUUA--)GC UUG--AAACC CAAAGGAC-C 2761 UG|ACGGUG- CCUUAGA-CC CCCCUAGA|G GAGCCUGU-U |CUAGA--AC CG(AUAACCC 2821 U--------- ----)CGUUA A-ACCUCACC ACUUCUAGCC ---------- ---------- 2881 (-------au cc-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGC CUA-UA|UA- 3121 |CC|-GC--C |G------UC GU-CA|G-CU UAC-|CCU(G --UGA)AGG- -----(caa- 3181 uaa)------ a-aGUAAGCA AAA-UGGG-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ----cacaa- 3781 ---------C CCAGAA-CGU C-AGGCCGAG G|UGUA|GCG UAC------- ---------G 3841 A-A-GC-GG- GA-AGA--AA -UGGGCUACA UU--UUCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--u ca---)---- ---------- ---------- UAG-AAcac- 4021 ---------- -----UACGG --ACAUG-CA ACA(------ ---------- ---------- 4081 ---------- ---------- UGAAA----) U-AG-U--GC -U--UGAAG- -GAGGAUUUA 4141 G-U--AGUAA A-AAGGAA(- acaga-gu-- --)GUCCUUU U-GAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -CCC--GGCU 4261 CUGAGG-CG- CGUACACA-C -CGCCCGUCA C-UCU--CCC CU-------- ---------- 4321 ---------- ---------- ---------- ---------- ---------< -gucaaaau- 4381 gcaau-aaag auacuuaaca ccaaagcgcu gaca------ ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- ---------A GGGG-AGG-C AAGUCGUAAC AUGGUAAG-U GUA-CC(GGA 4621 -A)-GU-GC- ACUUGGAUUA AAU------| ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- --------|| ||| // LOCUS mt.G.nigre 5213 bp RNA RNA 02-JUN-1998 DEFINITION Mitochondrion Gila nigrescens.; . ACCESSION AF0384 8 KEYWORDS . SOURCE Mitochondrion Gila nigrescens. ORGANISM Mitochondrion Gila nigrescens. REFERENCE 1 (bases 1 to 2717) AUTHORS Simons,A.M. and Mayden,R.L. TITLE Mitochondrial 12S and 16S Ribosomal RNA Sequences Phylogenetic Relationships of the Western North American Phoxinins (Actinopterygii: Cyprinidae) as Inferred from JOURNAL Mol. Phylogenet. Evol. (1998) In press STANDARD No information REFERENCE 2 (bases 1 to 2717) AUTHORS Simons,A.M. and Mayden,R.L. TITLE Direct Submission JOURNAL Submitted (15-DEC-1997) Department of Biological Sciences, The University of Alabama, Box 870344, Tuscaloosa, AL 35487-0344, USA STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: AF038478 BASE COUNT 294 a 248 c 221 g 192 t 4258 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --uaaAGGCA 661 (UGG-)U-CC U|GACCU-UA UUA-UCAGCU -C-UAAC-CC |AA-CU--UA -CAC-A-UGC 721 -AAGu----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------cuc c)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------|- gCAGUCCUGU GAGUA---CG C|CCU-Uaa- --uc-cc--- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- --(cugcccg -----)---- 1261 ---------- ---------- --gg--ga-- --cGAGGAGC |--------- GGGCAUCA-- 1321 -GGCACAA-- -----(auuu ---------- ---------- ---------- ------)--- 1381 ---UU|---A GCCCA--AGA C|GCCUG-GC --|------- (-caa--)-- -------GC| 1441 CACA------ ---------- ---------- -|-CCCC--( CAAG-)--GG AAuu---C-A 1501 GCA|GUG-AU AAAUAUUAAG C-CAUGAGU( ---------- ----GAAA)A CUUGA-CUC| 1561 A|-GUCA-G- GG-UUA---a ga-------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- GGGCC|-GGU 1921 -AAA-A---C UCGU-G(-CC AGCCACC-GC -GGU-UA)-A ACGAGA|--- -GGC-CCU-- 1981 AGUUG-AUAG U-------ac aaCGGC|GUA AAGGGUGGUU -A-agg---- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 ------a--- -aagca-aac aauaaa--gc -----|CAAA uggcCC-UUU ----GGCU(G 2341 UCAUA)CGCU UC-------u AGGu-guccG AAG------- ---cccaaua -UAC(-GAAA 2401 -)GU|A---- ----gcuuua g-----aaaa gccca----- ccu-gacaCC ACGAA-AGCU 2461 G-AGA---AA CAAACUGGG( AUUAGAUAC) CCCA-CUAU| -GCUC-AGC- CAUAAA-CCU 2521 A--GAUG-UC |CA|------ ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- --a(cuac)a a-uuA-GCCA 2701 U-C|--C|GC C-CGGG-UAC UACGAGC(-- -AUUA--)GC UUG--AAACC CAAAGGAC-C 2761 UG|ACGGUG- CCUUAGA-CC CCCCUAGA|G GAGCCUGU-U |CUAGA--AC CG(AUAACCC 2821 U--------- ----)CGUUA A-ACCUCACC ACUUCUAGCC ---------- ---------- 2881 (-------au cc-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGC CUA-UA|UA- 3121 |CC|-GC--C |G------UC GU-CA|G-CU UAC-|CCU(G --UGA)AGG- -----(caa- 3181 uaa)------ a-aGUAAGCA AAA-UGGG-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ----cacaa- 3781 ---------C CCAGAA-CGU C-AGGUCGAG G|UGUA|GCG UAC------- ---------G 3841 A-A-GC-GG- GA-AGA--AA -UGGGCUACA UU--UUCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--u ua---)---- ---------- ---------- UAG-AAcac- 4021 ---------- -----UACGG --ACAUG-CA ACA(------ ---------- ---------- 4081 ---------- ---------- UGAAA----) U-AG-U--GC -U--UGAAG- -GAGGAUUUA 4141 G-U--AGUAA A-AAGGAA(- acagc-gu-- --)GUCCUUU U-GAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -CCC--GGCU 4261 CUGAGG-CG- CGUACACA-C -CGCCCGUCA C-UCU--CCC CU-------- ---------- 4321 ---------- ---------- ---------- ---------- ---------< -gucaaaau- 4381 gcagu-aaag auacuuaacu ccaaagcgcu gaca------ ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- ---------A GGGG-AGG-C AAGUCGUAAC AUGGUAAG-U GUA-CC(GGA 4621 -A)-GU-GC- ACUUGGAUUA AAU------| ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- --------|| ||| // LOCUS mt.G.orcut 5213 bp RNA RNA 02-JUN-1998 DEFINITION Mitochondrion Gila orcutti.; . ACCESSION AF0384 9 KEYWORDS . SOURCE Mitochondrion Gila orcutti. ORGANISM Mitochondrion Gila orcutti. REFERENCE 1 (bases 1 to 2719) AUTHORS Simons,A.M. and Mayden,R.L. TITLE Mitochondrial 12S and 16S Ribosomal RNA Sequences Phylogenetic Relationships of the Western North American Phoxinins (Actinopterygii: Cyprinidae) as Inferred from JOURNAL Mol. Phylogenet. Evol. (1998) In press STANDARD No information REFERENCE 2 (bases 1 to 2719) AUTHORS Simons,A.M. and Mayden,R.L. TITLE Direct Submission JOURNAL Submitted (15-DEC-1997) Department of Biological Sciences, The University of Alabama, Box 870344, Tuscaloosa, AL 35487-0344, USA STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: AF038479 BASE COUNT 294 a 250 c 221 g 190 t 4258 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --uaaAGGCA 661 (UGG-)U-CC U|GACCU-UA UUA-UCAGCU -C-UAAC-CC |AA-CU--UA -CAC-A-UGC 721 -AAGu----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------cuc c)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------|- gCAGCCCUGU GAGUA---CG C|CCU-Uaa- --uc-cc--- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- --(cugcccg -----)---- 1261 ---------- ---------- --gg--ga-- --cGAGGAGC |--------- GGGCAUCA-- 1321 -GGCACAA-- -----(auuu ---------- ---------- ---------- ------)--- 1381 ---UU|---A GCCCA--AGA C|GCCUG-GC --|------- (-cga--)-- -------GC| 1441 CACA------ ---------- ---------- -|-CCCC--( CAAG-)--GG AAuu---C-A 1501 GCA|GUG-AU AAAUAUUAAG C-CAUAAGU( ---------- ----GAAA)G CUUGA-CUC| 1561 A|-GUUA-G- GG-UUA---a ga-------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- GGGCC|-GGU 1921 -AAA-A---C UCGU-G(-CC AGCCACC-GC -GGU-UA)-A ACGAGA|--- -GGC-CCU-- 1981 AGUUG-AUAG U-------ac aaCGGC|GUA AAGGGUGGUU -A-agg---- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 ------a--- -aagca-aau aauaaa--gc -----|CAAA uggcCC-CUU ----GGCU(G 2341 UCAUA)CGCU UC-------u AGGu-guccG AAG------- ---cccaaua -UAC(-GAAA 2401 -)GU|A---- ----gcuuua g-----agaa gccca----- ccu-gacaCC ACGAA-AGCU 2461 G-AGA---AA CAAACUGGG( AUUAGAUAC) CCCA-CUAU| -GCUC-AGC- CAUAAA-CCU 2521 A--GAUG-UC |CA|------ ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- --a(cuac)a a-uuA-ACCA 2701 U-C|--C|GC C-CGGG-UAC UACGAGC(-- -AUUA--)GC UUG--AAACC CAAAGGAC-C 2761 UG|ACGGUG- CCUUAGA-CC CCCCUAGA|G GAGCCUGU-U |CUAGA--AC CG(AUAACCC 2821 U--------- ----)CGUUA A-ACCUCACC ACUUCUAGCC ---------- ---------- 2881 (-------au cc-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGC CUA-UA|UA- 3121 |CC|-GC--C |G------UC GU-CA|G-CU UAC-|CCU(G --UGA)AGG- -----(caa- 3181 uaa)------ a-aGUAAGCA AAA-UGGG-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ----cacaa- 3781 ---------C CCAGAA-CGU C-AGGUCGAG G|UGUA|GCG UAC------- ---------G 3841 A-A-GC-GG- GA-AGA--AA -UGGGCUACA UU--UUCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--u ca---)---- ---------- ---------- CAG-AAcac- 4021 ---------- -----UACGG --ACAUG-CA ACA(------ ---------- ---------- 4081 ---------- ---------- UGAAA----) U-AG-U--GC -U--UGAAG- -GAGGAUUUA 4141 G-U--AGUAA A-AAGGAA(- acagc-gu-- --)GUCCUUU U-GAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -CCC--GGCU 4261 CUGAGG-CG- CGUACACA-C -CGCCCGUCA C-UCU--CCC CU-------- ---------- 4321 ---------- ---------- ---------- ---------- ---------< -gucgaaau- 4381 gcaau-aaag auaucuaacu ccaaagcacu gaca------ ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- ---------A GGGG-AGG-C AAGUCGUAAC AUGGUAAG-U GUA-CC(GGA 4621 -A)-GU-GC- ACUUGGAUUA AAU------| ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- --------|| ||| // LOCUS mt.G.pando 5213 bp RNA RNA 02-JUN-1998 DEFINITION Mitochondrion Gila pandora.; . ACCESSION AF0384 0 KEYWORDS . SOURCE Mitochondrion Gila pandora. ORGANISM Mitochondrion Gila pandora. REFERENCE 1 (bases 1 to 2718) AUTHORS Simons,A.M. and Mayden,R.L. TITLE Mitochondrial 12S and 16S Ribosomal RNA Sequences Phylogenetic Relationships of the Western North American Phoxinins (Actinopterygii: Cyprinidae) as Inferred from JOURNAL Mol. Phylogenet. Evol. (1998) In press STANDARD No information REFERENCE 2 (bases 1 to 2718) AUTHORS Simons,A.M. and Mayden,R.L. TITLE Direct Submission JOURNAL Submitted (15-DEC-1997) Department of Biological Sciences, The University of Alabama, Box 870344, Tuscaloosa, AL 35487-0344, USA STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: AF038480 BASE COUNT 297 a 247 c 219 g 192 t 4258 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --uaaAGGCA 661 (UGG-)U-CC U|GACCU-UA UUA-UCAGCU -C-UAAC-CC |AA-CU--UA -CAC-A-UGC 721 -AAGu----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------cuc c)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------|- gCAGUCCUGU GAGUA---CG C|CCU-Uaa- --uc-cc--- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- --(cugcccg -----)---- 1261 ---------- ---------- --gg--ga-- --cGAGGAGC |--------- GGGCAUCA-- 1321 -GGCACAA-- -----(auuu ---------- ---------- ---------- ------)--- 1381 ---UU|---A GCCCA--AGA C|GCCUG-GC --|------- (-caa--)-- -------GC| 1441 CACA------ ---------- ---------- -|-CCCC--( CAAG-)--GG AAuu---C-A 1501 GCA|GUG-AU AAAUAUUAAG C-CAUGAGU( ---------- ----GAAA)A CUUGA-CUC| 1561 A|-GUCA-G- GG-UUA---a ga-------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- GGGCC|-GGU 1921 -AAA-A---C UCGU-G(-CC AGCCACC-GC -GGU-UA)-A ACGAGA|--- -GGC-CCU-- 1981 AGUUG-AUAG U-------ac aaCGGC|GUA AAGGGUGGUU -A-agg---- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 ------a--- -aagca-aac aauaaa--gc -----|CAAA uggcCC-UUU ----GGCU(G 2341 UCAUA)CGCU UC-------u AGGu-guccG AAG------- ---cccaaua -UAC(-GAAA 2401 -)GU|A---- ----gcuuua g-----aaaa gccca----- ccu-gacaCC ACGAA-AGCU 2461 G-AGA---AA CAAACUGGG( AUUAGAUAC) CCCA-CUAU| -GCUC-AAC- CAUAAA-CCU 2521 A--GAUG-UC |CA|------ ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- --a(cuac)a a-uuA-GCCA 2701 U-C|--C|GC C-CGGG-UAC UACGAGC(-- -AUUA--)GC UUG--AAACC CAAAGGAC-C 2761 UG|ACGGUG- CCUUAGA-CC CCCCUAGA|G GAGCCUGU-U |CUAGA--AC CG(AUAACCC 2821 U--------- ----)CGUUA A-ACCUCACC ACUUCUAGCC ---------- ---------- 2881 (-------au cc-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGC CUA-UA|UA- 3121 |CC|-GC--C |G------UC GU-CA|G-CU UAC-|CCU(G --UGA)AGG- -----(caa- 3181 uaa)------ a-aGUAAGCA AAA-UGGG-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ----cacaa- 3781 ---------C CCAGAA-CGU C-AGGUCGAG G|UGUA|GCG UAC------- ---------G 3841 A-A-GC-GG- GA-AGA--AA -UGGGCUACA UU--UUCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--u ua---)---- ---------- ---------- UAG-AAcac- 4021 ---------- -----UACGG --ACAUG-CA ACA(------ ---------- ---------- 4081 ---------- ---------- UGAAA----) U-AG-U--GC -U--UGAAG- -GAGGAUUUA 4141 G-U--AGUAA A-AAGGAA(- auagc-gu-- --)GUCCUUU U-GAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -CCC--GGCU 4261 CUGAGG-CG- CGUACACA-C -CGCCCGUCA C-UCU--CCC CU-------- ---------- 4321 ---------- ---------- ---------- ---------- ---------< -gucaaaau- 4381 gcaau-aaag auacuuaaca ccaaagcgcu gaca------ ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- ---------A GGGG-AGG-C AAGUCGUAAC AUGGUAAG-U GUA-CC(GGA 4621 -A)-GU-GC- ACUUGGAUUA AAU------| ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- --------|| ||| // LOCUS mt.G.robus 5213 bp RNA RNA 02-JUN-1998 DEFINITION Mitochondrion Gila robusta.; . ACCESSION AF0384 1 KEYWORDS . SOURCE Mitochondrion Gila robusta. ORGANISM Mitochondrion Gila robusta. REFERENCE 1 (bases 1 to 2718) AUTHORS Simons,A.M. and Mayden,R.L. TITLE Phylogenetic Relationships of the Western North American Phoxinins (Actinopterygii: Cyprinidae) as Inferred from Mitochondrial 12S and 16S Ribosomal RNA Sequences JOURNAL Mol. Phylogenet. Evol. (1998) In press STANDARD No information REFERENCE 2 (bases 1 to 2718) AUTHORS Simons,A.M. and Mayden,R.L. TITLE Direct Submission JOURNAL Submitted (15-DEC-1997) Department of Biological Sciences, The University of Alabama, Box 870344, Tuscaloosa, AL 35487-0344, USA STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: AF038481 BASE COUNT 293 a 249 c 222 g 190 t 4259 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --uaaAGGCA 661 (UGG-)U-CC U|GACCU-UA UUA-UCAGCU -C-UAAC-CC |AA-CU--UA -CAC-A-UGC 721 -AAGu----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------cuc c)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------|- gCAGUCCUGU GAGUA---CG C|CCU-Uaa- --uc-cc--- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- --(cugcccg -----)---- 1261 ---------- ---------- --gg--ga-- --cGAGGAGC |--------- GGGCAUCA-- 1321 -GGCACAA-- -----(auuu ---------- ---------- ---------- ------)--- 1381 ---UU|---A GCCCA--AGA C|GCCUG-GC --|------- (-caa--)-- -------GC| 1441 CACA------ ---------- ---------- -|-CCCC--( CAA--)--GG AAuu---C-A 1501 GCA|GUG-AU AAAUAUUAAG C-CAUGAGU( ---------- ----GAAA)A CUUGA-CUC| 1561 A|-GUCA-G- GG-UUA---a ga-------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- GGGCC|-GGU 1921 -AAA-A---C UCGU-G(-CC AGCCACC-GC -GGU-UA)-A ACGAGA|--- -GGC-CCU-- 1981 AGUUG-AUAG U-------ac aaCGGC|GUA AAGGGUGGUU -A-agg---- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 ------a--- -gagca-cgc aauaaa--gc -----|CAAA uggcCC-UUU ----GGCU(G 2341 UCAUA)CGCU UC-------u AGGu-guccG AAG------- ---cccgaua -UAC(-GAAA 2401 -)GU|A---- ----gcuuua g-----aaaa gccca----- ccu-gacaCC ACGAA-AGCU 2461 G-AGA---AA CAAACUGGG( AUUAGAUAC) CCCA-CUAU| -GCUC-AGC- CAUAAA-CCU 2521 A--GAUG-UC |CA|------ ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- --a(cuac)a a-uuA-GCCA 2701 U-C|--C|GC C-CGGG-UAC UACGAGC(-- -AUUA--)GC UUG--AAACC CAAAGGAC-C 2761 UG|ACGGUG- CCUUAGA-CC CCCCUAGA|G GAGCCUGU-U |CUAGA--AC CG(AUAACCC 2821 U--------- ----)CGUUA A-ACCUCACC ACUUCUAGCC ---------- ---------- 2881 (-------au cc-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGC CUA-UA|UA- 3121 |CC|-GC--C |G------UC GU-CA|G-CU UAC-|CCU(G --UGA)AGG- -----(caa- 3181 uaa)------ a-aGUAAGCA AAA-UGGG-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ----cacaa- 3781 ---------C CCAGAA-CGU C-AGGUCGAG G|UGUA|GCG UAC------- ---------G 3841 A-A-GC-GG- GA-AGA--AA -UGGGCUACA UU--UUCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--u ca---)---- ---------- ---------- UAG-AAcac- 4021 ---------- -----UACGG --ACAUG-CA ACA(------ ---------- ---------- 4081 ---------- ---------- UGAAA----) U-AG-U--GC -U--UGAAG- -GAGGAUUUA 4141 G-U--AGUAA A-AAGGAA(- acaga-gu-- --)GUCCUUU U-GAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -CCC--GGCU 4261 CUGAGG-CG- CGUACACA-C -CGCCCGUCA C-UCU--CCC CU-------- ---------- 4321 ---------- ---------- ---------- ---------- ---------< -gucaaaau- 4381 gcaau-aaag auacuuaaca ccaaagcgcu gaca------ ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- ---------A GGGG-AGG-C AAGUCGUAAC AUGGUAAG-U GUA-CC(GGA 4621 -A)-GU-GC- ACUUGGAUUA AAU------| ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- --------|| ||| // LOCUS mt.L.exi.1 5213 bp RNA RNA 02-JUN-1998 DEFINITION Mitochondrion Lavinia exilicauda.; . ACCESSION AF0384 2 KEYWORDS . SOURCE Mitochondrion Lavinia exilicauda. ORGANISM Mitochondrion Lavinia exilicauda. REFERENCE 1 (bases 1 to 2716) AUTHORS Simons,A.M. and Mayden,R.L. TITLE Phoxinins (Actinopterygii: Cyprinidae) as Inferred from Mitochondrial 12S and 16S Ribosomal RNA Sequences Phylogenetic Relationships of the Western North American JOURNAL Mol. Phylogenet. Evol. (1998) In press STANDARD No information REFERENCE 2 (bases 1 to 2716) AUTHORS Simons,A.M. and Mayden,R.L. TITLE Direct Submission JOURNAL Submitted (15-DEC-1997) Department of Biological Sciences, The University of Alabama, Box 870344, Tuscaloosa, AL 35487-0344, USA STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: AF038482 BASE COUNT 297 a 244 c 220 g 193 t 4259 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --uaaAGGCA 661 (UGG-)U-CC U|GACCU-UA UUA-UCAGCU -C-UAAC-CC |AA-CU--UA -CAC-A-UGC 721 -AAGu----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------cuc c)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------|- gCAGUCCUGU GAGUA---CG C|CCU-Uaa- --uc-cc--- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- --(cugcccg -----)---- 1261 ---------- ---------- --gg--ga-- --cGAGGAGC |--------- GGGCAUCA-- 1321 -GGCACAA-- -----(a-uu ---------- ---------- ---------- ------)--- 1381 ---UU|---A GCCCA--AGA C|GCCUG-GC --|------- (-caa--)-- -------GC| 1441 CACA------ ---------- ---------- -|-CCCC--( CAAG-)--GG AAuu---C-A 1501 GCA|GUG-AU AAAUAUUAAG C-CAUGAGU( ---------- ----GAAA)A CUUGA-CUC| 1561 A|-GUCA-G- GG-UUA---a ga-------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- GGGCC|-GGU 1921 -AAA-A---C UCGU-G(-CC AGCCACC-GC -GGU-UA)-A ACGAGA|--- -GGC-CCU-- 1981 AGUUG-AUAA U-------ac aaCGGC|GUA AAGGGUGGUU -A-agg---- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 ------a--- -acgca-aau aauaaa--gc -----|CGAA uggcCC-UUU ----GGCU(G 2341 UCAUA)CGCU UC-------u AGGu-guccG AAG------- ---cccaaua -UAC(-GAAA 2401 -)GU|A---- ----gcuuua g-----aaaa gccca----- ccu-gacaCC ACGAA-AGCU 2461 G-AGA---AA CAAACUGGG( AUUAGAUAC) CCCA-CUAU| -GCUC-AGC- CAUAAA-CCU 2521 A--GACG-UU |CA|------ ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- --a(cuac)a a-uuA-GACG 2701 U-C|--C|GC C-CGGG-UAC UACGAGC(-- -AUUA--)GC UUG--AAACC CAAAGGAC-C 2761 UG|ACGGUG- CCUUAGA-CC CCCCUAGA|G GAGCCUGU-U |CUAGA--AC CG(AUAACCC 2821 U--------- ----)CGUUA A-ACCUCACC ACUUCUAGCC ---------- ---------- 2881 (-------ac cc-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGC CUA-UA|UA- 3121 |CC|-GC--C |G------UC GU-CA|G-CU UAC-|CCU(G --UGA)AGG- -----(caa- 3181 uaa)------ a-aGUAAGCA AAA-UGGG-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ----cacaa- 3781 ---------C CCAGAA-CGU C-AGGUCGAG G|UGUA|GCG UAC------- ---------G 3841 A-A-GU-GG- GA-AGA--AA -UGGGCUACA UU--UUCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--u ua---)---- ---------- ---------- UAG-AAcac- 4021 ---------- -----UACGA --AUAUG-CA ACA(------ ---------- ---------- 4081 ---------- ---------- UGAAA----) U-AG-U--GC -U--UGAAG- -GAGGAUUUA 4141 G-U--AGUAA A-AAGGAA(- acaga-gu-- --)GUCCUUU U-GAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -CCC--GGCU 4261 CUGAGG-CG- CGUACACA-C -CGCCCGUCA C-UCU--CCC CU-------- ---------- 4321 ---------- ---------- ---------- ---------- ---------< -gucaaaau- 4381 gcaau-aaag auauuuaaca ccaaagcgcu gaca------ ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- ---------A GGGG-AGG-C AAGUCGUAAC AUGGUAAG-U GUA-CC(GGA 4621 -A)-GU-GC- ACUUGGAUUA AAU------| ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- --------|| ||| // LOCUS mt.L.exi.2 5213 bp RNA RNA 02-JUN-1998 DEFINITION Mitochondrion Lavinia exilicauda.; . ACCESSION AF0384 3 KEYWORDS . SOURCE Mitochondrion Lavinia exilicauda. ORGANISM Mitochondrion Lavinia exilicauda. REFERENCE 1 (bases 1 to 2717) AUTHORS Simons,A.M. and Mayden,R.L. TITLE Mitochondrial 12S and 16S Ribosomal RNA Sequences Phylogenetic Relationships of the Western North American Phoxinins (Actinopterygii: Cyprinidae) as Inferred from JOURNAL Mol. Phylogenet. Evol. (1998) In press STANDARD No information REFERENCE 2 (bases 1 to 2717) AUTHORS Simons,A.M. and Mayden,R.L. TITLE Direct Submission JOURNAL Submitted (15-DEC-1997) Department of Biological Sciences, The University of Alabama, Box 870344, Tuscaloosa, AL 35487-0344, USA STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: AF038483 BASE COUNT 297 a 245 c 220 g 192 t 4259 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --uaaAGGCA 661 (UGG-)U-CC U|GACCU-UA UUA-UCAGCU -C-UAAC-CC |AA-CU--UA -CAC-A-UGC 721 -AAGu----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------cuc c)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------|- gCAGUCCUGU GAGUA---CG C|CCU-Uaa- --uc-cc--- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- --(cugcccg -----)---- 1261 ---------- ---------- --gg--ga-- --cGAGGAGC |--------- GGGCAUCA-- 1321 -GGCACAA-- -----(a-uu ---------- ---------- ---------- ------)--- 1381 ---UU|---A GCCCA--AGA C|GCCUG-GC --|------- (-caa--)-- -------GC| 1441 CACA------ ---------- ---------- -|-CCCC--( CAAG-)--GG AAuu---C-A 1501 GCA|GUG-AU AAAUAUUAAG C-CAUGAGU( ---------- ----GAAA)A CUUGA-CUC| 1561 A|-GUCA-G- GG-UUA---a ga-------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- GGGCC|-GGU 1921 -AAA-A---C UCGU-G(-CC AGCCACC-GC -GGU-UA)-A ACGAGA|--- -GGC-CCU-- 1981 AGUUG-AUAA U-------ac aaCGGC|GUA AAGGGUGGUU -A-agg---- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 ------a--- -acgca-aau aauaaa--gc -----|CGAA uggcCC-UUU ----GGCU(G 2341 UCAUA)CGCU UC-------u AGGu-guccG AAG------- ---cccaaua -UAC(-GAAA 2401 -)GU|A---- ----gcuuua g-----aaaa gccca----- ccu-gacaCC ACGAA-AGCU 2461 G-AGA---AA CAAACUGGG( AUUAGAUAC) CCCA-CUAU| -GCUC-AGC- CAUAAA-CCU 2521 A--GACG-UC |CA|------ ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- --a(cuac)a a-uuA-GACG 2701 U-C|--C|GC C-CGGG-UAC UACGAGC(-- -AUUA--)GC UUG--AAACC CAAAGGAC-C 2761 UG|ACGGUG- CCUUAGA-CC CCCCUAGA|G GAGCCUGU-U |CUAGA--AC CG(AUAACCC 2821 U--------- ----)CGUUA A-ACCUCACC ACUUCUAGCC ---------- ---------- 2881 (-------ac cc-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGC CUA-UA|UA- 3121 |CC|-GC--C |G------UC GU-CA|G-CU UAC-|CCU(G --UGA)AGG- -----(caa- 3181 uaa)------ a-aGUAAGCA AAA-UGGG-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ----cacaa- 3781 ---------C CCAGAA-CGU C-AGGUCGAG G|UGUA|GCG UAC------- ---------G 3841 A-A-GU-GG- GA-AGA--AA -UGGGCUACA UU--UUCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--u ua---)---- ---------- ---------- UAG-AAcac- 4021 ---------- -----UACGA --AUAUG-CA ACA(------ ---------- ---------- 4081 ---------- ---------- UGAAA----) U-AG-U--GC -U--UGAAG- -GAGGAUUUA 4141 G-U--AGUAA A-AAGGAA(- acaga-gu-- --)GUCCUUU U-GAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -CCC--GGCU 4261 CUGAGG-CG- CGUACACA-C -CGCCCGUCA C-UCU--CCC CU-------- ---------- 4321 ---------- ---------- ---------- ---------- ---------< -gucaaaau- 4381 gcaau-aaag auauuuaaca ccaaagcgcu gaca------ ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- ---------A GGGG-AGG-C AAGUCGUAAC AUGGUAAG-U GUA-CC(GGA 4621 -A)-GU-GC- ACUUGGAUUA AAU------| ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- --------|| ||| // LOCUS mt.L.rutil 5213 bp RNA RNA 02-JUN-1998 DEFINITION Mitochondrion Leuciscus rutilus.; . ACCESSION AF0384 4 KEYWORDS . SOURCE Mitochondrion Leuciscus rutilus. ORGANISM Mitochondrion Leuciscus rutilus. REFERENCE 1 (bases 1 to 2717) AUTHORS Simons,A.M. and Mayden,R.L. TITLE Phylogenetic Relationships of the Western North American Phoxinins (Actinopterygii: Cyprinidae) as Inferred from Mitochondrial 12S and 16S Ribosomal RNA Sequences JOURNAL Mol. Phylogenet. Evol. (1998) In press STANDARD No information REFERENCE 2 (bases 1 to 2717) AUTHORS Simons,A.M. and Mayden,R.L. TITLE Direct Submission JOURNAL Submitted (15-DEC-1997) Department of Biological Sciences, The University of Alabama, Box 870344, Tuscaloosa, AL 35487-0344, USA STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: AF038484 BASE COUNT 292 a 248 c 223 g 193 t 4257 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --uaaAGGCA 661 (UGG-)U-CC U|GACCU-UA UUA-UUAGCU -C-UAAC-CC |AA-CU--UA -CAC-A-UGC 721 -AAGu----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------cuc c)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------|- gCAACCCCGU GAGUA---UG C|CCU-Uaa- --uc-cc--- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- --(cugcccg -----)---- 1261 ---------- ---------- --gg--ga-- --cGAGGAGC |--------- GGGCAUCA-- 1321 -GGCACAA-- -----(auuu ---------- ---------- ---------- ------)--- 1381 ---UU|---A GCCCA--AGA C|GCCUG-GC --|------- (-cga--)-- -------GC| 1441 CACA------ ---------- ---------- -|-CCCC--( CAAG-)--GG AAuu---C-A 1501 GCA|GUG-AU AAAUAUUAAG C-CAUGAGU( ---------- ----GAAA)A CUUGA-CUC| 1561 A|-GUCA-G- GG-UUA---a ga-------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- GGGCC|-GGU 1921 -AAA-A---C UCGU-G(-CC AGCCACC-GC -GGU-UA)-A ACGAGA|--- -GGC-CCU-- 1981 AGUUA-AUAA U-------ac -aCGGC|GUA AAGGGUGGUU -A-agg---- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 ------g--- -aagcacaau aauaaa--gc -----|CAAA uggcCC-UUU ----GGCU(G 2341 UCAUA)CGCU UC-------u AGGu-guccG AAG------- ---cccaaua -UAC(-GAAA 2401 -)GU|A---- ----gcuuua a-----uaaa gccca----- ccu-gaccCC ACGAA-AGCU 2461 G-AGA---AA CAAACUGGG( AUUAGAUAC) CCCA-CUAU| -GCUC-AGC- UAUAAA-CCU 2521 A--GACG-UU |CA|------ ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- --g(cuac)a a-uuA-GACG 2701 U-C|--C|GC C-CGGG-UAC UACGAGC(-- -AUUA--)GC UUG--AAACC CAAAGGAC-C 2761 UG|ACGGUG- CCUUAGA-CC CCCCUAGA|G GAGCCUGU-U |CUAGA--AC CG(AUAACCC 2821 C--------- ----)CGUUA A-ACCUCACC ACUUCUAGCC ---------- ---------- 2881 (-------ac cc-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGC CUA-UA|UA- 3121 |CC|-GC--C |G------UC GU-CA|G-CU UAC-|CCU(G --UGA)AGG- -----(caa- 3181 uaa)------ a-aGUAAGCA AAA-UGGG-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ----cacaa- 3781 ---------C CCAGAA-CGU C-AGGUCGAG G|UGUA|GCG UAC------- ---------G 3841 A-A-GC-GG- GA-AGA--AA -UGGGCUACA UU--UUCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(-uc aa---)---- ---------- ---------- UAG-AAcac- 4021 ---------- -----UACGG --AUAUG-CA ACA(------ ---------- ---------- 4081 ---------- ---------- UGAAA----) U-AG-U--GC -U--UGAAG- -GAGGAUUUA 4141 G-U--AGUAA A-AAGGAA(- gcaga-gu-- --)GUCCUUU U-GAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -CCC--GGCU 4261 CUGAGG-CG- CGUACACA-C -CGCCCGUCA C-UCU--CCC CU-------- ---------- 4321 ---------- ---------- ---------- ---------- ---------< -gucaaaau- 4381 gcaau-gaag uuaccuaaca cuaaagcgcu gacg------ ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- ---------A GGGG-AGG-C AAGUCGUAAC AUGGUAAG-U GUA-CC(GGA 4621 -A)-GU-GC- ACUUGGAUUA AAU------| ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- --------|| ||| // LOCUS mt.L.chr.1 5213 bp RNA RNA 11-JAN-191 DEFINITION Mitochondrion Luxilus chrysocephalus. ACCESSION No information KEYWORDS No information. SOURCE Mitochondrion Luxilus chrysocephalus. ORGANISM Mitochondrion Luxilus chrysocephalus. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: U09469 DEFINITION Luxilus chrysocephalus chrysocephalus Whitewater R., Bollinger Co., MO, USA, mitochondrion 12S rRNA and 16S rRNA genes, partial sequence, and tRNA-Val gene, complete sequence. SOURCE striped shiner ORGANISM Mitochondrion Luxilus chrysocephalus Eukaryotae; Hyperchondria; Eukaryote crown group; Metazoa/Eumycota group; Metazoa; Eumetazoa; Bilateria; Coelomata; Deuterostomia; Chordata; Vertebrata; Gnathostomata; Osteichthyes; Actinopterygii; Actinopteri; Holostei; Halecostomi; Teleostei; Elopocephala; Clupeocephala; Euteleostei; Ostariophysi; Otophysi; Cypriniformes; Cyprinoidea; Cyprinidae; Luxilus. REFERENCE 1 (bases 1 to 2007) AUTHORS Duvernell,D.D. and Aspinwall,N. TITLE Introgression of Luxilus cornutus mtDNA into allopatric populations of Luxilus chrysocephalus (Teleostei:Cyprinidae) in Missouri and Arkansas JOURNAL Unpublished REFERENCE 2 (bases 1 to 2007) AUTHORS Aspinwall,N. TITLE Direct Submission JOURNAL Submitted (06-MAY-1994) Nevin Aspinwall, Saint Louis University, Biology, 3507 Laclede, St. Louis, MO 63103-2010, USA COMMENT NCBI gi: 488578 FEATURES Location/Qualifiers rRNA <1..469 /product="12S rRNA" tRNA 470..540 /product="tRNA-Val" rRNA 541..>2007 /product="16S rRNA" source 1..2007 /mitochondrion /organism="Luxilus chrysocephalus" /sub_species="chrysocephalus" /isolate="Collection site: Whitewater R., Bollinger Co., MO, USA" /haplotype="CHRC" /tissue_type="muscle, skeletal" /dev_stage="adult" BASE COUNT 142 a 117 c 114 g 96 t 4744 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ----|----- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- -~~~~~~~~~ 661 (~~~-)~-~~ ~|~~~~~-~~ ~~~-~~~~~~ -~-~~~~-~~ |~~~~~~~~~ ~~~~-~~~~~ 721 ~~~~~~~-~~ ~~~~~|~~~~ ~~~~~~~(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------~~~ ~)~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~-~~|~ ~~~~~~~~~~ ~~~~~---~~ ~|~~~~~~~~ -~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~~~~ -----)---- 1261 ---------- ---------- --~~--~~~- ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~(~~~~ ~~~------- ---------- ---------- ------)--- 1381 ---~~|---~ ~~~~~--~~~ ~|~~~~~-~~ --|~~~~~~~ (-~~~--)~~ ~~~~~~~~~| 1441 ~~~~------ ---------- ---------- -|-~~~~--( ~~~~-)~~~~ ~~~~~~~~-~ 1501 ~~~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~( ---------- ---~~~~~)- ----~-~~~| 1561 ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~|-~~~ 1921 -~~~-~---~ ~~~~~~(-~~ ~~~~~~~~~~ ~~~~-~~)-~ ~~~~~~|--- -~~~~~~~-- 1981 ~~~~~-~~~~ ~~~-~~~~~~ ~~~~~~|~~~ ~~~~~~~~-- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 -~~~~~~~~~ -~~~~~~~~~ ~~~~~~--~~ -----|~~~~ ~~~~~~-~~~ ----~~~~(~ 2341 ~~~~~)~~~- ~~~------~ ~~~~-~~~~~ ~~~------- -----~~~~~ -~~~(-~~~~ 2401 -)~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~---~~~-~ ~~~--~~~~~ ~~~~~-~~~~ 2461 ~-~~~---~~ ~~~~~~~~~( ~~~~~~~~~) ~~~~-~~~~| -~~~~-~~~- ~~~~~~-~~~ 2521 ~--~~~~-~~ |~~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~g(cuac)a ----auCAGA 2701 C-G|--U|CC G-CGGG-UAC UACGAGC(-- -AUUA--)GC UUG--AAACC CAAAGGAC-C 2761 UG|ACGGUG- CCUCAGA-CC CCCCUAGA|G GAGCCUGU-U |CUAGA--AC CG(AUAACCC 2821 ---------- ----)CGUUA A-ACCUCACC GCUUCUAGCC ---------- ---------- 2881 (--------a uc-)------ ------(--- --)----<-- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ->-------- ---c--cAGC -UA-UA|UA- 3121 |CC|-GC--C |G------UC GU-CA|G-CU UAC-|CCU(G --UGA)AGC- -----(aau- 3181 aa-)------ a-aGUAAGCA AAA-UGGG-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- -----acaa- 3781 ---------C CCAGAA-CGU C-AGGUCGAG G|UGUA|GCG UAC------- ---------G 3841 A-A-GC-GG- GA-AGA--AA -UGGGCUACA UU--UCUA-- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--u aa---)---- ---------- ---------- -UA-GAauac 4021 ---------- -----UACGG --ACAUGGCA ACA(------ ---------- ---------- 4081 ---------- ---------- UGAAA----) U-AG-U--GC -U--UGAAG- -GAGGA-UUA 4141 G-U--AGU-- A-AAGGAA(- gcagu-gu-- --)GUCCUUU --GAC----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- ------GGCU 4261 CU-AGA-CG- CGUACACA-C -CGC-CGUCA C-UCU--CCC CU-------- ---------- 4321 ---------- ---------- ---------- ---------- ---------< -gucgaaau- 4381 gcagu-aaag uuaccuaaca ccauagcucu gaca------ ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- ---------A GGGG-AGG-C -AGUCGUAAC AUGGUAAG-U GUA-CC(GGA 4621 -A)-GU-GC- ACUUGGAUAA AAUU-----| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS mt.L.chr.2 5213 bp RNA RNA 11-JAN-191 DEFINITION Mitochondrion Luxilus chrysocephalus. ACCESSION No information KEYWORDS No information. SOURCE Mitochondrion Luxilus chrysocephalus. ORGANISM Mitochondrion Luxilus chrysocephalus. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: U09472 DEFINITION Luxilus chrysocephalus isolepis mitochondrion 12S rRNA and 16S rRNA genes, partial sequence, and tRNA-Val gene, complete sequence. SOURCE striped shiner ORGANISM Mitochondrion Luxilus chrysocephalus Eukaryotae; Hyperchondria; Eukaryote crown group; Metazoa/Eumycota group; Metazoa; Eumetazoa; Bilateria; Coelomata; Deuterostomia; Chordata; Vertebrata; Gnathostomata; Osteichthyes; Actinopterygii; Actinopteri; Holostei; Halecostomi; Teleostei; Elopocephala; Clupeocephala; Euteleostei; Ostariophysi; Otophysi; Cypriniformes; Cyprinoidea; Cyprinidae; Luxilus. REFERENCE 1 (bases 1 to 2008) AUTHORS Duvernell,D.D. and Aspinwall,N. TITLE Introgression of Luxilus cornutus mtDNA into allopatric populations of Luxilus chrysocephalus (Teleostei:Cyprinidae) in Missouri and Arkansas JOURNAL Unpublished REFERENCE 2 (bases 1 to 2008) AUTHORS Aspinwall,N. TITLE Direct Submission JOURNAL Submitted (06-MAY-1994) Nevin Aspinwall, Saint Louis University, Biology, 3507 Laclede, St. Louis, MO 63103-2010, USA COMMENT NCBI gi: 488581 FEATURES Location/Qualifiers rRNA <1..469 /product="12S rRNA" tRNA 470..540 /product="tRNA-Val" rRNA 541..>2008 /product="16S rRNA" source 1..2008 /mitochondrion /organism="Luxilus chrysocephalus" /sub_species="isolepis" /isolate="Collection site: Saline R., Grant Co., AR, USA" /haplotype="CHRI" /tissue_type="muscle, skeletal" /dev_stage="adult" BASE COUNT 142 a 117 c 113 g 97 t 4744 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ----|----- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- -~~~~~~~~~ 661 (~~~-)~-~~ ~|~~~~~-~~ ~~~-~~~~~~ -~-~~~~-~~ |~~~~~~~~~ ~~~~-~~~~~ 721 ~~~~~~~-~~ ~~~~~|~~~~ ~~~~~~~(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------~~~ ~)~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~-~~|~ ~~~~~~~~~~ ~~~~~---~~ ~|~~~~~~~~ -~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~~~~ -----)---- 1261 ---------- ---------- --~~--~~~- ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~(~~~~ ~~~------- ---------- ---------- ------)--- 1381 ---~~|---~ ~~~~~--~~~ ~|~~~~~-~~ --|~~~~~~~ (-~~~--)~~ ~~~~~~~~~| 1441 ~~~~------ ---------- ---------- -|-~~~~--( ~~~~-)~~~~ ~~~~~~~~-~ 1501 ~~~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~( ---------- ---~~~~~)- ----~-~~~| 1561 ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~|-~~~ 1921 -~~~-~---~ ~~~~~~(-~~ ~~~~~~~~~~ ~~~~-~~)-~ ~~~~~~|--- -~~~~~~~-- 1981 ~~~~~-~~~~ ~~~-~~~~~~ ~~~~~~|~~~ ~~~~~~~~-- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 -~~~~~~~~~ -~~~~~~~~~ ~~~~~~--~~ -----|~~~~ ~~~~~~-~~~ ----~~~~(~ 2341 ~~~~~)~~~- ~~~------~ ~~~~-~~~~~ ~~~------- -----~~~~~ -~~~(-~~~~ 2401 -)~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~---~~~-~ ~~~--~~~~~ ~~~~~-~~~~ 2461 ~-~~~---~~ ~~~~~~~~~( ~~~~~~~~~) ~~~~-~~~~| -~~~~-~~~- ~~~~~~-~~~ 2521 ~--~~~~-~~ |~~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~a(cuac)a ----auCAGG 2701 C-G|--U|CC G-CGGG-UAC UACGAGC(-- -AUUA--)GC UUG--AAACC CAAAGGAC-C 2761 UG|ACGGUG- CCUCAGA-CC CCCCUAGA|G GAGCCUGU-U |CUAGA--AC CG(AUAACCC 2821 ---------- ----)CGUUA A-ACCUCACC ACUUCUAGCC ---------- ---------- 2881 (--------a uc-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---c--cAGC -UA-UA|UA- 3121 |CC|-GC--C |G------UC GU-CA|G-CU UAC-|CCU(G --UGA)AGC- -----(aau- 3181 aa-)------ a-aGUAAGCA AAA-UGGG-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- -----acaa- 3781 ---------C CCAGAA-CGU C-AGGUCGAG G|UGUA|GCG UAC------- ---------G 3841 A-A-GC-GG- GA-AGA--AA -UGGGCUACA UU--UCUA-- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--u ua---)---- ---------- ---------- -UA-GAauac 4021 ---------- -----UACGG --ACAUGGCA ACA(------ ---------- ---------- 4081 ---------- ---------- UGAAA----) U-AG-U--GC -U--UGAAG- -GAGGA-UUA 4141 G-U--AGU-- A-AAGGAA(- gcagu-gu-- --)GUCCUUU --GAC----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- ------GGCU 4261 CU-AGA-CG- CGUACACA-C -CGC-CGUCA C-UCU--CCC CU-------- ---------- 4321 ---------- ---------- ---------- ---------- ---------< -gucgaaau- 4381 gcagu-aaag uuaccuaaca ccauagcucu gaca------ ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- ---------A GGGG-AGG-C -AGUCGUAAC AUGGUAAG-U GUA-CC(GGA 4621 -A)-GU-GC- ACUUGGAUAA AAUU-----| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS mt.L.chr.3 5213 bp RNA RNA 11-JAN-191 DEFINITION Mitochondrion Luxilus chrysocephalus. ACCESSION No information KEYWORDS No information. SOURCE Mitochondrion Luxilus chrysocephalus. ORGANISM Mitochondrion Luxilus chrysocephalus. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: U09473 DEFINITION Luxilus chrysocephalus chrysocephalus Meramec R., Jefferson Co., MO, USA, mitochondrion 12S rRNA and 16S rRNA genes, partial sequence, and tRNA-Val gene, complete sequence. SOURCE striped shiner ORGANISM Mitochondrion Luxilus chrysocephalus Eukaryotae; Hyperchondria; Eukaryote crown group; Metazoa/Eumycota group; Metazoa; Eumetazoa; Bilateria; Coelomata; Deuterostomia; Chordata; Vertebrata; Gnathostomata; Osteichthyes; Actinopterygii; Actinopteri; Holostei; Halecostomi; Teleostei; Elopocephala; Clupeocephala; Euteleostei; Ostariophysi; Otophysi; Cypriniformes; Cyprinoidea; Cyprinidae; Luxilus. REFERENCE 1 (bases 1 to 2003) AUTHORS Duvernell,D.D. and Aspinwall,N. TITLE Introgression of Luxilus cornutus mtDNA into allopatric populations of Luxilus chrysocephalus (Teleostei:Cyprinidae) in Missouri and Arkansas JOURNAL Unpublished REFERENCE 2 (bases 1 to 2003) AUTHORS Aspinwall,N. TITLE Direct Submission JOURNAL Submitted (06-MAY-1994) Nevin Aspinwall, Saint Louis University, Biology, 3507 Laclede, St. Louis, MO 63103-2010, USA COMMENT NCBI gi: 488582 FEATURES Location/Qualifiers rRNA <1..469 /product="12S rRNA" tRNA 470..540 /product="tRNA-Val" rRNA 541..>2003 /product="16S rRNA" source 1..2003 /mitochondrion /organism="Luxilus chrysocephalus" /sub_species="chrysocephalus" /isolate="Collection site: Meramec R., Jefferson Co., MO, USA" /haplotype="CORN3" /tissue_type="muscle, skeletal" /dev_stage="adult" /note="mtDNA sequence is an introgressed haplotype from L. cornutus" BASE COUNT 142 a 118 c 115 g 94 t 4744 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ----|----- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- -~~~~~~~~~ 661 (~~~-)~-~~ ~|~~~~~-~~ ~~~-~~~~~~ -~-~~~~-~~ |~~~~~~~~~ ~~~~-~~~~~ 721 ~~~~~~~-~~ ~~~~~|~~~~ ~~~~~~~(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------~~~ ~)~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~-~~|~ ~~~~~~~~~~ ~~~~~---~~ ~|~~~~~~~~ -~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~~~~ -----)---- 1261 ---------- ---------- --~~--~~~- ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~(~~~~ ~~~------- ---------- ---------- ------)--- 1381 ---~~|---~ ~~~~~--~~~ ~|~~~~~-~~ --|~~~~~~~ (-~~~--)~~ ~~~~~~~~~| 1441 ~~~~------ ---------- ---------- -|-~~~~--( ~~~~-)~~~~ ~~~~~~~~-~ 1501 ~~~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~( ---------- ---~~~~~)- ----~-~~~| 1561 ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~|-~~~ 1921 -~~~-~---~ ~~~~~~(-~~ ~~~~~~~~~~ ~~~~-~~)-~ ~~~~~~|--- -~~~~~~~-- 1981 ~~~~~-~~~~ ~~~-~~~~~~ ~~~~~~|~~~ ~~~~~~~~-- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 -~~~~~~~~~ -~~~~~~~~~ ~~~~~~--~~ -----|~~~~ ~~~~~~-~~~ ----~~~~(~ 2341 ~~~~~)~~~- ~~~------~ ~~~~-~~~~~ ~~~------- -----~~~~~ -~~~(-~~~~ 2401 -)~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~---~~~-~ ~~~--~~~~~ ~~~~~-~~~~ 2461 ~-~~~---~~ ~~~~~~~~~( ~~~~~~~~~) ~~~~-~~~~| -~~~~-~~~- ~~~~~~-~~~ 2521 ~--~~~~-~~ |~~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~a(cuac)a ----auCAGG 2701 C-G|--U|CC G-CGGG-UAC UACGAGC(-- -AUUA--)GC UUG--AAACC CAAAGGAC-C 2761 UG|ACGGUG- CCUCAGA-CC CCCCUAGA|G GAGCCUGU-U |CUAGA--AC CG(AUAACCC 2821 ---------- ----)CGUUA A-ACCUCACC GCUUCUAGCC ---------- ---------- 2881 (--------a uc-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---c--cAGC -UA-UA|UA- 3121 |CC|-GC--C |G------UC GU-CA|G-CU UAC-|CCU(G --UGA)AGC- -----(aau- 3181 aa-)------ a-aGUAAGCA GAA-UGGG-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- -----acaa- 3781 ---------C CCAGAA-CGU C-AGGUCGAG G|UGUA|GCG UAC------- ---------G 3841 A-A-GC-GG- GA-AGA--AA -UGGGCUACA UU--UCUA-- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--u aa---)---- ---------- ---------- -UA-GAauac 4021 ---------- -----UACGG --ACAUGGCA ACA(------ ---------- ---------- 4081 ---------- ---------- UGAAA----) U-AG-U--GC -U--UGAAG- -GAGGA-UUA 4141 G-U--AGU-- A-AAGGAA(- gcagc-gu-- --)GUCCUUU --GAC----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- ------GGCU 4261 CU-AGA-CG- CGUACACA-C -CGC-CGUCA C-UCU--CCC CU-------- ---------- 4321 ---------- ---------- ---------- ---------- ---------< -gucgaaau- 4381 gcagu-aaag uuaccuaaca ccaaagcucu gaca------ ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- ---------A GGGG-AGG-C -AGUCGUAAC AUGGUAAG-U GUA-CC(GGA 4621 -A)-GU-GC- ACUUGGAUAA AAUU-----| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS mt.L.chr.4 5213 bp RNA RNA 11-JAN-191 DEFINITION Mitochondrion Luxilus chrysocephalus. ACCESSION No information KEYWORDS No information. SOURCE Mitochondrion Luxilus chrysocephalus. ORGANISM Mitochondrion Luxilus chrysocephalus. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: U09474 DEFINITION Luxilus chrysocephalus chrysocephalus Fourche A Du Clos Cr., Ste. Genevieve, MO, USA, mitochondrion 12S rRNA and 16S rRNA genes, partial sequence, and tRNA-Val gene, complete sequence. SOURCE striped shiner ORGANISM Mitochondrion Luxilus chrysocephalus Eukaryotae; Hyperchondria; Eukaryote crown group; Metazoa/Eumycota group; Metazoa; Eumetazoa; Bilateria; Coelomata; Deuterostomia; Chordata; Vertebrata; Gnathostomata; Osteichthyes; Actinopterygii; Actinopteri; Holostei; Halecostomi; Teleostei; Elopocephala; Clupeocephala; Euteleostei; Ostariophysi; Otophysi; Cypriniformes; Cyprinoidea; Cyprinidae; Luxilus. REFERENCE 1 (bases 1 to 2006) AUTHORS Duvernell,D.D. and Aspinwall,N. TITLE Introgression of Luxilus cornutus mtDNA into allopatric populations of Luxilus chrysocephalus (Teleostei:Cyprinidae) in Missouri and Arkansas JOURNAL Unpublished REFERENCE 2 (bases 1 to 2006) AUTHORS Aspinwall,N. TITLE Direct Submission JOURNAL Submitted (06-MAY-1994) Nevin Aspinwall, Saint Louis University, Biology, 3507 Laclede, St. Louis, MO 63103-2010, USA COMMENT NCBI gi: 488583 FEATURES Location/Qualifiers rRNA <1..470 /product="12S rRNA" tRNA 470..540 /product="tRNA-Val" rRNA 541..>2006 /product="16S rRNA" source 1..2006 /mitochondrion /organism="Luxilus chrysocephalus" /sub_species="chrysocephalus" /isolate="Collection site: Fourche A Du Clos Cr., Ste. Genevieve, MO, USA" /haplotype="CORN4" /tissue_type="muscle, skeletal" /dev_stage="adult" /note="mtDNA sequence is an introgressed haplotype from L. cornutus" BASE COUNT 142 a 119 c 115 g 94 t 4743 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ----|----- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- -~~~~~~~~~ 661 (~~~-)~-~~ ~|~~~~~-~~ ~~~-~~~~~~ -~-~~~~-~~ |~~~~~~~~~ ~~~~-~~~~~ 721 ~~~~~~~-~~ ~~~~~|~~~~ ~~~~~~~(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------~~~ ~)~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~-~~|~ ~~~~~~~~~~ ~~~~~---~~ ~|~~~~~~~~ -~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~~~~ -----)---- 1261 ---------- ---------- --~~--~~~- ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~(~~~~ ~~~------- ---------- ---------- ------)--- 1381 ---~~|---~ ~~~~~--~~~ ~|~~~~~-~~ --|~~~~~~~ (-~~~--)~~ ~~~~~~~~~| 1441 ~~~~------ ---------- ---------- -|-~~~~--( ~~~~-)~~~~ ~~~~~~~~-~ 1501 ~~~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~( ---------- ---~~~~~)- ----~-~~~| 1561 ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~|-~~~ 1921 -~~~-~---~ ~~~~~~(-~~ ~~~~~~~~~~ ~~~~-~~)-~ ~~~~~~|--- -~~~~~~~-- 1981 ~~~~~-~~~~ ~~~-~~~~~~ ~~~~~~|~~~ ~~~~~~~~-- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 -~~~~~~~~~ -~~~~~~~~~ ~~~~~~--~~ -----|~~~~ ~~~~~~-~~~ ----~~~~(~ 2341 ~~~~~)~~~- ~~~------~ ~~~~-~~~~~ ~~~------- -----~~~~~ -~~~(-~~~~ 2401 -)~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~---~~~-~ ~~~--~~~~~ ~~~~~-~~~~ 2461 ~-~~~---~~ ~~~~~~~~~( ~~~~~~~~~) ~~~~-~~~~| -~~~~-~~~- ~~~~~~-~~~ 2521 ~--~~~~-~~ |~~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~a(cuac)a ----auCAGG 2701 C-G|--U|CC G-CGGG-UAC UACGAGC(-- -AUUA--)GC UUG--AAACC CAAAGGAC-C 2761 UG|ACGGUG- CCUCAGA-CC CCCCUAGA|G GAGCCUGU-U |CUAGA--AC CG(AUAACCC 2821 ---------- ----)CGUUA A-ACCUCACC GCUUCUAGCC ---------- ---------- 2881 (--------a uc-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---c--cAGC -UA-UA|UA- 3121 |CC|-GC--C |G------UC GU-CA|G-CU UAC-|CCU(G --UGA)AGC- -----(aau- 3181 aa-)------ a-aGUAAGCA GAA-UGGG-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- -----acaa- 3781 ---------C CCAGAA-CGU C-AGGUCGAG G|UGUA|GCG UAC------- ---------G 3841 A-A-GC-GG- GA-AGA--AA -UGGGCUACA UU--UCUA-- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--u aa---)---- ---------- ---------- -UA-GAauac 4021 ---------- -----UACGG --ACAUGGCA ACA(------ ---------- ---------- 4081 ---------- ---------- UGAAA----) U-AG-U--GC -U--UGAAG- -GAGGA-UUA 4141 G-U--AGU-- A-AAGGAA(- gcagc-gu-- --)GUCCUUU --GAC----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- ------GGCU 4261 CU-AGA-CG- CGUACACA-C -CGC-CGUCA C-UCU--CCC CU-------- ---------- 4321 ---------- ---------- ---------- ---------- ---------< -gucgaaau- 4381 gcagu-aaag uuaccuaaca ccaaagcucu gaca------ ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- ---------A GGGG-AGG-C -AGUCGUAAC AUGGUAAG-U GUA-CC(GGA 4621 -A)-GU-GC- ACUUGGAUAA AAUUC----| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS mt.L.cor.1 5213 bp RNA RNA 11-JAN-191 DEFINITION Mitochondrion Luxilus cornutus. ACCESSION No information KEYWORDS No information. SOURCE Mitochondrion Luxilus cornutus. ORGANISM Mitochondrion Luxilus cornutus. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: U09470 DEFINITION Luxilus cornutus Yellow R., Chippewa Co., WI, USA, mitochondrion 12S rRNA and 16S rRNA genes, partial sequence, and tRNA-Val gene, complete sequence. SOURCE common shiner ORGANISM Mitochondrion Luxilus cornutus Eukaryotae; Hyperchondria; Eukaryote crown group; Metazoa/Eumycota group; Metazoa; Eumetazoa; Bilateria; Coelomata; Deuterostomia; Chordata; Vertebrata; Gnathostomata; Osteichthyes; Actinopterygii; Actinopteri; Holostei; Halecostomi; Teleostei; Elopocephala; Clupeocephala; Euteleostei; Ostariophysi; Otophysi; Cypriniformes; Cyprinoidea; Cyprinidae; Luxilus. REFERENCE 1 (bases 1 to 2004) AUTHORS Duvernell,D.D. and Aspinwall,N. TITLE Introgression of Luxilus cornutus mtDNA into allopatric populations of Luxilus chrysocephalus (Teleostei:Cyprinidae) in Missouri and Arkansas JOURNAL Unpublished REFERENCE 2 (bases 1 to 2004) AUTHORS Aspinwall,N. TITLE Direct Submission JOURNAL Submitted (06-MAY-1994) Nevin Aspinwall, Saint Louis University, Biology, 3507 Laclede, St. Louis, MO 63103-2010, USA COMMENT NCBI gi: 488579 FEATURES Location/Qualifiers rRNA <1..469 /product="12S rRNA" tRNA 470..540 /product="tRNA-Val" rRNA 541..>2004 /product="16S rRNA" source 1..2004 /mitochondrion /organism="Luxilus cornutus" /isolate="Collection site: Yellow R., Chippewa Co., WI, USA" /haplotype="CORN1" /tissue_type="muscle, skeletal" /dev_stage="adult" BASE COUNT 142 a 118 c 115 g 94 t 4744 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ----|----- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- -~~~~~~~~~ 661 (~~~-)~-~~ ~|~~~~~-~~ ~~~-~~~~~~ -~-~~~~-~~ |~~~~~~~~~ ~~~~-~~~~~ 721 ~~~~~~~-~~ ~~~~~|~~~~ ~~~~~~~(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------~~~ ~)~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~-~~|~ ~~~~~~~~~~ ~~~~~---~~ ~|~~~~~~~~ -~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~~~~ -----)---- 1261 ---------- ---------- --~~--~~~- ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~(~~~~ ~~~------- ---------- ---------- ------)--- 1381 ---~~|---~ ~~~~~--~~~ ~|~~~~~-~~ --|~~~~~~~ (-~~~--)~~ ~~~~~~~~~| 1441 ~~~~------ ---------- ---------- -|-~~~~--( ~~~~-)~~~~ ~~~~~~~~-~ 1501 ~~~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~( ---------- ---~~~~~)- ----~-~~~| 1561 ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~|-~~~ 1921 -~~~-~---~ ~~~~~~(-~~ ~~~~~~~~~~ ~~~~-~~)-~ ~~~~~~|--- -~~~~~~~-- 1981 ~~~~~-~~~~ ~~~-~~~~~~ ~~~~~~|~~~ ~~~~~~~~-- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 -~~~~~~~~~ -~~~~~~~~~ ~~~~~~--~~ -----|~~~~ ~~~~~~-~~~ ----~~~~(~ 2341 ~~~~~)~~~- ~~~------~ ~~~~-~~~~~ ~~~------- -----~~~~~ -~~~(-~~~~ 2401 -)~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~---~~~-~ ~~~--~~~~~ ~~~~~-~~~~ 2461 ~-~~~---~~ ~~~~~~~~~( ~~~~~~~~~) ~~~~-~~~~| -~~~~-~~~- ~~~~~~-~~~ 2521 ~--~~~~-~~ |~~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~a(cuac)a ----auCAGG 2701 C-G|--U|CC G-CGGG-UAC UACGAGC(-- -AUUA--)GC UUG--AAACC CAAAGGAC-C 2761 UG|ACGGUG- CCUCAGA-CC CCCCUAGA|G GAGCCUGU-U |CUAGA--AC CG(AUAACCC 2821 ---------- ----)CGUUA A-ACCUCACC GCUUCUAGCC ---------- ---------- 2881 (--------a uc-)------ ------(--- --)----<-- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ->-------- ---c--cAGC -UA-UA|UA- 3121 |CC|-GC--C |G------UC GU-CA|G-CU UAC-|CCU(G --UGA)AGC- -----(aau- 3181 aa-)------ a-aGUAAGCA GAA-UGGG-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- -----acaa- 3781 ---------C CCAGAA-CGU C-AGGUCGAG G|UGUA|GCG UAC------- ---------G 3841 A-A-GC-GG- GA-AGA--AA -UGGGCUACA UU--UCUA-- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--u aa---)---- ---------- ---------- -UA-GAauac 4021 ---------- -----UACGG --ACAUGGCA ACA(------ ---------- ---------- 4081 ---------- ---------- UGAAA----) U-AG-U--GC -U--UGAAG- -GAGGA-UUA 4141 G-U--AGU-- A-AAGGAA(- gcagc-gu-- --)GUCCUUU --GAC----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- ------GGCU 4261 CU-AGA-CG- CGUACACA-C -CGC-CGUCA C-UCU--CCC CU-------- ---------- 4321 ---------- ---------- ---------- ---------- ---------< -gucgaaau- 4381 gcagu-aaag uuaccuaaca ccaaagcucu gaca------ ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- ---------A GGGG-AGG-C -AGUCGUAAC AUGGUAAG-U GUA-CC(GGA 4621 -A)-GU-GC- ACUUGGAUAA AAUU-----| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS mt.L.cor.2 5213 bp RNA RNA 11-JAN-191 DEFINITION Mitochondrion Luxilus cornutus. ACCESSION No information KEYWORDS No information. SOURCE Mitochondrion Luxilus cornutus. ORGANISM Mitochondrion Luxilus cornutus. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: U09471 DEFINITION Luxilus cornutus Perche Cr., Boone Co., MO, USA, mitochondrion 12S rRNA and 16S rRNA genes, partial sequence, and tRNA-Val gene, complete sequence. SOURCE common shiner ORGANISM Mitochondrion Luxilus cornutus Eukaryotae; Hyperchondria; Eukaryote crown group; Metazoa/Eumycota group; Metazoa; Eumetazoa; Bilateria; Coelomata; Deuterostomia; Chordata; Vertebrata; Gnathostomata; Osteichthyes; Actinopterygii; Actinopteri; Holostei; Halecostomi; Teleostei; Elopocephala; Clupeocephala; Euteleostei; Ostariophysi; Otophysi; Cypriniformes; Cyprinoidea; Cyprinidae; Luxilus. REFERENCE 1 (bases 1 to 2004) AUTHORS Duvernell,D.D. and Aspinwall,N. TITLE Introgression of Luxilus cornutus mtDNA into allopatric populations of Luxilus chrysocephalus (Teleostei:Cyprinidae) in Missouri and Arkansas JOURNAL Unpublished REFERENCE 2 (bases 1 to 2004) AUTHORS Aspinwall,N. TITLE Direct Submission JOURNAL Submitted (06-MAY-1994) Nevin Aspinwall, Saint Louis University, Biology, 3507 Laclede, St. Louis, MO 63103-2010, USA COMMENT NCBI gi: 488580 FEATURES Location/Qualifiers rRNA <1..470 /product="12S rRNA" tRNA 470..540 /product="tRNA-Val" rRNA 541..>2004 /product="16S rRNA" source 1..2004 /mitochondrion /organism="Luxilus cornutus" /isolate="Collection site: Perche Cr., Boone Co., MO, USA" /haplotype="CORN2" /tissue_type="muscle, skeletal" /dev_stage="adult" BASE COUNT 142 a 119 c 115 g 94 t 4743 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ----|----- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- -~~~~~~~~~ 661 (~~~-)~-~~ ~|~~~~~-~~ ~~~-~~~~~~ -~-~~~~-~~ |~~~~~~~~~ ~~~~-~~~~~ 721 ~~~~~~~-~~ ~~~~~|~~~~ ~~~~~~~(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------~~~ ~)~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~-~~|~ ~~~~~~~~~~ ~~~~~---~~ ~|~~~~~~~~ -~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~~~~ -----)---- 1261 ---------- ---------- --~~--~~~- ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~(~~~~ ~~~------- ---------- ---------- ------)--- 1381 ---~~|---~ ~~~~~--~~~ ~|~~~~~-~~ --|~~~~~~~ (-~~~--)~~ ~~~~~~~~~| 1441 ~~~~------ ---------- ---------- -|-~~~~--( ~~~~-)~~~~ ~~~~~~~~-~ 1501 ~~~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~( ---------- ---~~~~~)- ----~-~~~| 1561 ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~|-~~~ 1921 -~~~-~---~ ~~~~~~(-~~ ~~~~~~~~~~ ~~~~-~~)-~ ~~~~~~|--- -~~~~~~~-- 1981 ~~~~~-~~~~ ~~~-~~~~~~ ~~~~~~|~~~ ~~~~~~~~-- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 -~~~~~~~~~ -~~~~~~~~~ ~~~~~~--~~ -----|~~~~ ~~~~~~-~~~ ----~~~~(~ 2341 ~~~~~)~~~- ~~~------~ ~~~~-~~~~~ ~~~------- -----~~~~~ -~~~(-~~~~ 2401 -)~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~---~~~-~ ~~~--~~~~~ ~~~~~-~~~~ 2461 ~-~~~---~~ ~~~~~~~~~( ~~~~~~~~~) ~~~~-~~~~| -~~~~-~~~- ~~~~~~-~~~ 2521 ~--~~~~-~~ |~~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~a(cuac)a ----auCAGG 2701 C-G|--U|CC G-CGGG-UAC UACGAGC(-- -AUUA--)GC UUG--AAACC CAAAGGAC-C 2761 UG|ACGGUG- CCUCAGA-CC CCCCUAGA|G GAGCCUGU-U |CUAGA--AC CG(AUAACCC 2821 ---------- ----)CGUUA A-ACCUCACC GCUUCUAGCC ---------- ---------- 2881 (--------a uc-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---c--cAGC -UA-UA|UA- 3121 |CC|-GC--C |G------UC GU-CA|G-CU UAC-|CCU(G --UGA)AGC- -----(aau- 3181 aa-)------ a-aGUAAGCA GAA-UGGG-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- -----acaa- 3781 ---------C CCAGAA-CGU C-AGGUCGAG G|UGUA|GCG UAC------- ---------G 3841 A-A-GC-GG- GA-AGA--AA -UGGGCUACA UU--UCUA-- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--u aa---)---- ---------- ---------- -UA-GAauac 4021 ---------- -----UACGG --ACAUGGCA ACA(------ ---------- ---------- 4081 ---------- ---------- UGAAA----) U-AG-U--GC -U--UGAAG- -GAGGA-UUA 4141 G-U--AGU-- A-AAGGAA(- gcagc-gu-- --)GUCCUUU --GAC----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- ------GGCU 4261 CU-AGA-CG- CGUACACA-C -CGC-CGUCA C-UCU--CCC CU-------- ---------- 4321 ---------- ---------- ---------- ---------- ---------< -gucgaaau- 4381 gcagu-aaag uuaccuaaca ccaaagcucu gaca------ ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- ---------A GGGG-AGG-C -AGUCGUAAC AUGGUAAG-U GUA-CC(GGA 4621 -A)-GU-GC- ACUUGGAUAA AAUUC----| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS mt.M.marga 5213 bp RNA RNA 20-OCT-1997 DEFINITION Mitochondrion Margariscus margarita.; . ACCESSION AF023192 KEYWORDS . SOURCE Mitochondrion Margariscus margarita. ORGANISM Mitochondrion Margariscus margarita. REFERENCE 1 (bases 1 to 955) AUTHORS Simons,A.M. and Mayden,R.L. TITLE Fishes (Actinopterygii: Cyprinidae) Phylogenetic Relationships of the Creek Chubs and the Spine-Fins: an Enigmatic Group of North American Cyprinid JOURNAL Cladistics 13 (3) (1997) In press STANDARD No information REFERENCE 2 (bases 1 to 955) AUTHORS Simons,A.M. and Mayden,R.L. TITLE Direct Submission JOURNAL Submitted (08-SEP-1997) Department of Biological Sciences, The University of Alabama, Box 870344, Tuscaloosa, AL 35487-0344, USA STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: AF023192 BASE COUNT 284 a 252 c 224 g 195 t 4258 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --uaaAGGCA 661 (UGG-)U-CC U|GACCU-UA UUA-UCAGCU -C-UAGC-CC |AA-CU--UA -CAC-A-UGC 721 -AAGu----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------cuc c)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------|- gCACCCCCGU GAGUA---UG C|CCU-Uaa- --uc-cc--- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- --(cugcccg -----)---- 1261 ---------- ---------- --gg--ga-- --cGAGGAGC |--------- GGGCAUCA-- 1321 -GGCACAA-- -----(auuu ---------- ---------- ---------- ------)--- 1381 ---UU|---A GCCCA--AGA C|GCCUG-GC --|------- (-cua--)-- -------GC| 1441 CACA------ ---------- ---------- -|-CCCC--( CAAG-)--GG AAuu---C-A 1501 GCA|GUG-AU AAAUAUUAAG C-CAUAAGU( ---------- ----GAAA)A CUUGA-CUC| 1561 A|-GUUA-G- AG-CUA---a ga-------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- GGGCC|-GGU 1921 -AAA-A---C UCGU-G(-CC AGCCACC-GC -GGU-UA)-G ACGAGA|--- -GGC-CCU-- 1981 AGUUG-AUAG U-------ac aaCGGC|GUA AAGGGUGGUU -A-agg---- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 ------a--- --cgcacaau aauaaa--gc -----|CGAA uggcCC-UUU ----GGCU(G 2341 UCAUA)CGCU UC-------u AGGu-guccG AAG------- ---cccaaua -UAC(-GAAA 2401 -)GU|A---- ----gcuuua a-----gaga gccca----- ccu-gaccCC ACGAA-AGCU 2461 G-AGG---AA CAAACUGGG( AUUAGAUAC) CCCA-CUAU| -GCUC-AGC- CAUAAA-CCU 2521 A--GACG-UC |CA|------ ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- --a(cuac)a a--uuaGACG 2701 U-C|--C|GC C-CGGG-UAC UACGAGC(-- -AUUA--)GC UUG--AAACC CAAAGGAC-C 2761 UG|ACGGUG- CCUUAGA-CC CCCCUAGA|G GAGCCUGU-U |CUAGA--AC CG(AUAACCC 2821 U--------- ----)CGUUA A-ACCUCACC ACUUCUAGCC ---------- ---------- 2881 (-------ac cc-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGC CUA-UA|UA- 3121 |CC|-GC--C |G------UC GU-CA|G-CU UAC-|CCU(G --UGA)AGG- -----(caa- 3181 uaa)------ a-aGUAAGCA AAA-UGGG-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ----cauac- 3781 ---------C CCAGAA-CGU C-AGGUCGAG G|UGUA|GCG UAC------- ---------G 3841 A-A-GU-GG- GA-AGA--AA -UGGGCUACA UU--UUCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--u ua---)---- ---------- ---------- UAG-AAcac- 4021 ---------- -----UACGG --ACAUG-CA ACA(------ ---------- ---------- 4081 ---------- ---------- UGAAA----) U-AG-U--GC -U--UGAAG- -GAGGAUUUA 4141 G-u--AGUAA A-AAGGAA(- gcaga-gu-- --)GUCCUUU U-GAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -CCC--GGCU 4261 CUGAGG-CG- CGUACACA-C -CGCCCGUCA C-UCU--CCC CU-------- ---------- 4321 ---------- ---------- ---------- ---------- ---------< -gucaaaau- 4381 gcgac-uuaa auauuuaaua ccaacgcgcc gaca------ ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- ---------A GGGG-AGG-C AAGUCGUAAC AUGGUAAG-U GUA-CC(GGA 4621 -A)-GU-GC- UCUUGGAUUA AAU------| ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- --------|| ||| // LOCUS mt.N.chrys 5213 bp RNA RNA 20-OCT-1997 DEFINITION Mitochondrion Notemigonus chrysoleucas.; . ACCESSION AF023194 KEYWORDS . SOURCE Mitochondrion Notemigonus chrysoleucas. ORGANISM Mitochondrion Notemigonus chrysoleucas. REFERENCE 1 (bases 1 to 953) AUTHORS Simons,A.M. and Mayden,R.L. TITLE Spine-Fins: an Enigmatic Group of North American Cyprinid Fishes (Actinopterygii: Cyprinidae) Phylogenetic Relationships of the Creek Chubs and the JOURNAL Cladistics 13 (3) (1997) In press STANDARD No information REFERENCE 2 (bases 1 to 953) AUTHORS Simons,A.M. and Mayden,R.L. TITLE Direct Submission JOURNAL Submitted (08-SEP-1997) Department of Biological Sciences, The University of Alabama, Box 870344, Tuscaloosa, AL 35487-0344, USA STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: AF023194 BASE COUNT 292 a 249 c 224 g 188 t 4260 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --caaAGGCA 661 (UGG-)U-CC U|GACCU-UA UUA-UUAGCU -U-UAAC-CC |AA-CU--UA -CAC-A-UGC 721 -AAGu----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------cuc c)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------|- gCAGCCCCGU GAGUA---UG C|CCU-Uaa- --uc-cc--- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- --(cugcccg -----)---- 1261 ---------- ---------- --gg--ga-- --cGAGGAGC |--------- GGGCAUCA-- 1321 -GGCACAA-- -----(auuu ---------- ---------- ---------- ------)--- 1381 ---UU|---A GCCCA--AGA C|GCCUG-GC --|------- (-caa--)-- -------GC| 1441 CACA------ ---------- ---------- -|-CCCC--( CAAG-)--GG AAuu---C-A 1501 GCA|GUG-AU AAAUAUUAAG C-CAUAAGU( ---------- ----GAAA)A CUUGA-CUC| 1561 A|-GUCA-G- GG-UUA---a aa-------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- GGGCC|-GGU 1921 -AAA-A---C UCGU-G(-CC AGCCACC-GC -GGU-UA)-A ACGAGA|--- -GGC-CCC-- 1981 AGUUA-AUAA U--------a caCGGC|GUA AAGGGUGGUU -A-agg---- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 ------a--- -aagcauggu aauaaa--gc -----|CGAA uggcCC-UUU ----GGCU(G 2341 UCAUA)CGCU UC-------u AGGu-guccG AAG------- ---cccaacg -UAC(-GAAA 2401 -)GU|A---- ----acuuua g-----uaaa accca----- ccu-gaccCC ACGAA-AGCU 2461 G-AGA---AA CAAACUGGG( AUUAGAUAC) CCCA-CUAU| -GCUC-AGC- CGUAAA-CCC 2521 A--GACG-UC |CA|------ ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- --g(cuac)a a--uuaGACG 2701 U-C|--C|GC C-CGGG-UAC UACGAGC(-- -AUUA--)GC UUG--AAACC CAAAGGAC-C 2761 UG|ACGGUG- CCUUAGA-CC CCCCUAGA|G GAGCCUGU-U |CUAGA--AC CG(AUAACCC 2821 U--------- ----)CGUUA A-ACCUCACC ACUUCUAGCC ---------- ---------- 2881 (-------ac cc-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGC CUA-UA|UA- 3121 |CC|-GC--C |G------UC GU-CA|G-CU UAC-|CCU(G --UGA)AGG- -----(aaa- 3181 uaa)------ a-aGUAAGCA AGA-UGGG-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ----cac--- 3781 ---------A GCAGAA-CGU C-AGGUCGAG G|UGUA|GCG UAC------- ---------G 3841 A-A-GC-GG- GA-AGA--AA -UGGGCUACA UU--UUCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--c aa---)---- ---------- ---------- UAG-AAcac- 4021 ---------- -----UACGG --ACAUG-CA ACA(------ ---------- ---------- 4081 ---------- ---------- UGAAA----) U-AG-U--GC -U--UGAAG- -GAGGAUUUA 4141 G-u--AGUAA A-AAGGAA(- gcaga-gu-- --)GUCCUUU U-GAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -CCC--GGCU 4261 CUGAGG-CG- CGUACACA-C -CGCCCGUCA C-UCU--CCC CU-------- ---------- 4321 ---------- ---------- ---------- ---------- ---------< -gucaaaau- 4381 gcagu-aaag uuaccuaaca cuaaagcacu gaca------ ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- ---------A GGGG-AGG-C AAGUCGUAAC AUGGUAAG-U GUA-CC(GGA 4621 -A)-GU-GC- ACUUGGAUUA AAU------| ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- --------|| ||| // LOCUS mt.N.ather 5213 bp RNA RNA 20-OCT-1997 DEFINITION Mitochondrion Notropis atherinoides.; . ACCESSION AF023195 KEYWORDS . SOURCE Mitochondrion Notropis atherinoides. ORGANISM Mitochondrion Notropis atherinoides. REFERENCE 1 (bases 1 to 955) AUTHORS Simons,A.M. and Mayden,R.L. TITLE Phylogenetic Relationships of the Creek Chubs and the Spine-Fins: an Enigmatic Group of North American Cyprinid Fishes (Actinopterygii: Cyprinidae) JOURNAL Cladistics 13 (3) (1997) In press STANDARD No information REFERENCE 2 (bases 1 to 955) AUTHORS Simons,A.M. and Mayden,R.L. TITLE Direct Submission JOURNAL Submitted (08-SEP-1997) Department of Biological Sciences, The University of Alabama, Box 870344, Tuscaloosa, AL 35487-0344, USA STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: AF023195 BASE COUNT 291 a 252 c 225 g 187 t 4258 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --caaAGGCA 661 (UGG-)U-CC C|GACCU-UA CUA-UCAGCU -C-UAGC-CC |AA-CU--UA -CAC-A-UGC 721 -AAGu----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------cuc c)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------|- gCAGUCCCGU GAGUA---AG C|CCU-Uaa- --uc-cc--- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- --(cugcccg -----)---- 1261 ---------- ---------- --gg--ga-- --cGAGGAGC |--------- AGGCAUCA-- 1321 -GGCACAA-- -----(auu- ---------- ---------- ---------- ------)--- 1381 ---UU|---A GCCCA--AGA C|GCCAG-GC --|------- (-cua--)-- -------GC| 1441 CACA------ ---------- ---------- -|-CCCC--( CAAG-)--GG AAuu---C-A 1501 GCA|GUG-AU AAAUAUUAAG C-CAUAAGU( ---------- ----GAAA)A CUUGA-CUC| 1561 A|-GUUA-G- AG-CUA---a ga-------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- GGGCC|-GGU 1921 -AAA-A---C UCGU-G(-CC AGCCACC-GC -GGU-UA)-A ACGAGA|--- -GGC-CCU-- 1981 AGUUG-AUAG U-------au aaCGGC|GUA AAGGGUGGUU -A-ugg---- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 ------a--u -agcgaaa-u aauaaa--gu -----|CGAA uggcCC-UUU ----GGCU(G 2341 UCAUA)CGCU UC-------u AGGa-guccG AAG------- ---cccagua -UAC(-GAAA 2401 -)GU|A---- ----acuuua a-----gaaa gccca----- ccu-gaccCC ACGAA-AACU 2461 G-AGG---AA CAAACUGGG( AUUAGAUAC) CCCA-CUAU| -GCUC-AGU- CAUAAA-CCC 2521 A--GACG-UC |CA|------ ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- --g(cuac)a a--ucaGGCG 2701 U-C|--C|GC C-CGGG-UAC UACGAGC(-- -AUUA--)GC UUG--AAACC CAAAGGAC-C 2761 UG|ACGGUG- CCUCAGA-CC CCCCUAGA|G GAGCCUGU-U |CUAGA--AC CG(AUAACCC 2821 C--------- ----)CGUUA A-ACCUCACC GCUUCUAGCC ---------- ---------- 2881 (-------au cc-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGC CUA-UA|UA- 3121 |CC|-GC--C |G------UC GU-CA|G-CU UAC-|CCU(G --UGA)AGG- -----(caa- 3181 uaa)------ a-aGUAAGCA AAA-UGGG-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ----cacaa- 3781 ---------C CCAGAA-CGU C-AGGUCGAG G|UGUA|GCG UAC------- ---------G 3841 A-A-GC-GG- GA-AGA--AA -UGGGCUACA UU--UUCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--u ua---)---- ---------- ---------- UAG-AAcac- 4021 ---------- -----UACGG --ACAUG-CA ACA(------ ---------- ---------- 4081 ---------- ---------- UGAAA----) U-AG-U--GC -U--UGAAG- -GAGGAUUUA 4141 G-u--AGUAA A-AAGGAA(- gcagc-gu-- --)GUCCUUU U-GAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -CCC--GGCU 4261 CUGAGA-CG- CGUACACA-C -CGCCCGUCA C-UCU--CCC CU-------- ---------- 4321 ---------- ---------- ---------- ---------- ---------< -gucgaaau- 4381 gcaau-aaag uuaccuaacg cuaaagcucu gaca------ ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- ---------A GGGG-AGG-C AAGUCGUAAC AUGGUAAG-U GUA-CC(GGA 4621 -A)-GU-GC- ACUUGGAUAA AAU------| ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- --------|| ||| // LOCUS mt.N.rubel 5213 bp RNA RNA 11-JAN-191 DEFINITION Mitochondrion Notropis rubellus. ACCESSION No information KEYWORDS No information. SOURCE Mitochondrion Notropis rubellus. ORGANISM Mitochondrion Notropis rubellus. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: U09475 DEFINITION Notropis rubellus mitochondrion 12S rRNA and 16S rRNA genes, partial sequence, and tRNA-Val gene, complete sequence. SOURCE rosyface shiner ORGANISM Mitochondrion Notropis rubellus Eukaryotae; Hyperchondria; Eukaryote crown group; Metazoa/Eumycota group; Metazoa; Eumetazoa; Bilateria; Coelomata; Deuterostomia; Chordata; Vertebrata; Gnathostomata; Osteichthyes; Actinopterygii; Actinopteri; Holostei; Halecostomi; Teleostei; Elopocephala; Clupeocephala; Euteleostei; Ostariophysi; Otophysi; Cypriniformes; Cyprinoidea; Cyprinidae; Notropis. REFERENCE 1 (bases 1 to 2003) AUTHORS Duvernell,D.D. and Aspinwall,N. TITLE Introgression of Luxilus cornutus mtDNA into allopatric populations of Luxilus chrysocephalus (Teleostei:Cyprinidae) in Missouri and Arkansas JOURNAL Unpublished REFERENCE 2 (bases 1 to 2003) AUTHORS Aspinwall,N. TITLE Direct Submission JOURNAL Submitted (06-MAY-1994) Nevin Aspinwall, Saint Louis University, Biology, 3507 Laclede, St. Louis, MO 63103-2010, USA COMMENT NCBI gi: 488584 FEATURES Location/Qualifiers rRNA <1..469 /product="12S rRNA" tRNA 470..540 /product="tRNA-Val" rRNA 541..>2003 /product="16S rRNA" source 1..2003 /mitochondrion /organism="Notropis rubellus" /isolate="Collection site: Meramec R., Franklin Co., MO, USA" /haplotype="RUBE" /tissue_type="muscle, skeletal" /dev_stage="adult" BASE COUNT 142 a 118 c 114 g 95 t 4744 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ----|----- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- -~~~~~~~~~ 661 (~~~-)~-~~ ~|~~~~~-~~ ~~~-~~~~~~ -~-~~~~-~~ |~~~~~~~~~ ~~~~-~~~~~ 721 ~~~~~~~-~~ ~~~~~|~~~~ ~~~~~~~(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------~~~ ~)~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~-~~|~ ~~~~~~~~~~ ~~~~~---~~ ~|~~~~~~~~ -~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~~~~ -----)---- 1261 ---------- ---------- --~~--~~~- ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~(~~~~ ~~~------- ---------- ---------- ------)--- 1381 ---~~|---~ ~~~~~--~~~ ~|~~~~~-~~ --|~~~~~~~ (-~~~--)~~ ~~~~~~~~~| 1441 ~~~~------ ---------- ---------- -|-~~~~--( ~~~~-)~~~~ ~~~~~~~~-~ 1501 ~~~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~( ---------- ---~~~~~)- ----~-~~~| 1561 ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~|-~~~ 1921 -~~~-~---~ ~~~~~~(-~~ ~~~~~~~~~~ ~~~~-~~)-~ ~~~~~~|--- -~~~~~~~-- 1981 ~~~~~-~~~~ ~~~-~~~~~~ ~~~~~~|~~~ ~~~~~~~~-- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 -~~~~~~~~~ -~~~~~~~~~ ~~~~~~--~~ -----|~~~~ ~~~~~~-~~~ ----~~~~(~ 2341 ~~~~~)~~~- ~~~------~ ~~~~-~~~~~ ~~~------- -----~~~~~ -~~~(-~~~~ 2401 -)~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~---~~~-~ ~~~--~~~~~ ~~~~~-~~~~ 2461 ~-~~~---~~ ~~~~~~~~~( ~~~~~~~~~) ~~~~-~~~~| -~~~~-~~~- ~~~~~~-~~~ 2521 ~--~~~~-~~ |~~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~a(cuac)a ----auCAGG 2701 C-G|--U|CC G-CGGG-UAC UACGAGC(-- -AUUA--)GC UUG--AAACC CAAAGGAC-C 2761 UG|ACGGUG- CCUCAGA-CC CCCCUAGA|G GAGCCUGU-U |CUAGA--AC CG(AUAACCC 2821 ---------- ----)CGUUA A-ACCUCACC GCUUCUAGCC ---------- ---------- 2881 (--------a uc-)------ ------(--- --)----<-- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ->-------- ---c--cAGC -UA-UA|UA- 3121 |CC|-GC--C |G------UC GU-CA|G-CU UAC-|CCU(G --UGA)AGC- -----(agu- 3181 aa-)------ a-aGUAAGCA AAA-UGGG-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- -----acaa- 3781 ---------C CCAGAA-CGU C-AGGUCGAG G|UGUA|GCG UAC------- ---------G 3841 A-A-GC-GG- GA-AGA--AA -UGGGCUACA UU--UCUA-- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--u ua---)---- ---------- ---------- -UA-GAacac 4021 ---------- -----UACGG --ACAUGGCA ACA(------ ---------- ---------- 4081 ---------- ---------- UGAAA----) U-AG-U--GC -U--UGAAG- -GAGGA-UUA 4141 G-U--AGU-- A-AAGGAA(- gcagu-gu-- --)GUCCUUU --GAC----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- ------GGCU 4261 CU-AGA-CG- CGUACACA-C -CGC-CGUCA C-UCU--CCC CU-------- ---------- 4321 ---------- ---------- ---------- ---------- ---------< -gucgaaau- 4381 gcaau-aaag uuaccuaaca ccaaagcucu gaca------ ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- ---------A GGGG-AGG-C -AGUCGUAAC AUGGUAAG-U GUA-CC(GGA 4621 -A)-GU-GC- ACUUGGAUAA AAUU-----| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS mt.O.mic.1 5213 bp RNA RNA 02-JUN-1998 DEFINITION Mitochondrion Orthodon microlepidotus.; . ACCESSION AF0384 8 KEYWORDS . SOURCE Mitochondrion Orthodon microlepidotus. ORGANISM Mitochondrion Orthodon microlepidotus. REFERENCE 1 (bases 1 to 2721) AUTHORS Simons,A.M. and Mayden,R.L. TITLE Mitochondrial 12S and 16S Ribosomal RNA Sequences Phylogenetic Relationships of the Western North American Phoxinins (Actinopterygii: Cyprinidae) as Inferred from JOURNAL Mol. Phylogenet. Evol. (1998) In press STANDARD No information REFERENCE 2 (bases 1 to 2721) AUTHORS Simons,A.M. and Mayden,R.L. TITLE Direct Submission JOURNAL Submitted (15-DEC-1997) Department of Biological Sciences, The University of Alabama, Box 870344, Tuscaloosa, AL 35487-0344, USA STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: AF038488 BASE COUNT 297 a 249 c 224 g 188 t 4255 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --uaaAGGCA 661 (UGG-)U-CC U|GACCU-UA UUA-UCAGCU -C-UAGC-CC |AA-CU--UA -CAC-A-UGC 721 -AAGu----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------cuc c)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------|- gCAGUCCCGU GAGUA---CG C|CCU-Uaa- --uc-cc--- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- --(cugcccg -----)---- 1261 ---------- ---------- --gg--ga-- --cGAGGAGC |--------- GGGCAUCA-- 1321 -GGCACAA-- -----(auuu u--------- ---------- ---------- ------)--- 1381 ---UU|---A GCCCA--AGA C|GCCUG-GC --|------- (-cga--)-- -------GC| 1441 CACA------ ---------- ---------- -|-CCCC--( CAAG-)--GG AAuu---C-A 1501 GCA|GUG-AU AAACAUUAAG C-CAUGAGU( ---------- ----GAAA)A CUUGA-CUC| 1561 A|-GUUA-G- GG-CCA---a aa-------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- GGGCC|-GGU 1921 -AAA-A---C UCGU-G(-CC AGCCACC-GC -GGU-UA)-G ACGAGA|--- -GGC-CCC-- 1981 AGUUG-AUAG U-------ac aaCGGC|GUA AAGGGUGGUU -A-agg---- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 ------a--- -aagcaaaac aauaaa--gu -----|CAAA uggcCC-UUU ----GGCU(G 2341 UCAUA)CGCU UC-------u AGGu-guccG AAG------- ---uccaacu aUAC(-GAAA 2401 -)GU|A---- ----gcuuua g-----aaaa gccca----- ccu-gacaCC ACGAA-AGCU 2461 G-AGA---AA CAAACUGGG( AUUAGAUAC) CCCA-CUAU| -GCUC-AGC- CAUAAA-CCC 2521 A--GAUG-UC |AA|------ ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- --a(cuac)a a-uuA-GACA 2701 U-C|--C|GC C-CGGG-UAC UACGAGC(-- -AUUA--)GC UUG--AAACC CAAAGGAC-C 2761 UG|ACGGUG- CCUUAGA-CC CCCCUAGA|G GAGCCUGU-U |CUAGA--AC CG(AUAACCC 2821 U--------- ----)CGUUA A-ACCUCACC ACUUCUAGCC ---------- ---------- 2881 (-------ac cc-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGC CUA-UA|UA- 3121 |CC|-GC--C |G------UC GU-CA|G-CU UAC-|CCU(G --UGA)AGG- -----(caa- 3181 uaa)------ a-aGUAAGCA GAA-UGGG-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ----cacaa- 3781 ---------C CCAGAA-CGU C-AGGUCGAG G|UGUA|GCG CAC------- ---------G 3841 A-A-GC-GG- GA-AGA--AA -UGGGCUACA UU--UUCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--u ua---)---- ---------- ---------- UAG-AAcac- 4021 ---------- -----UACGG --AUACG-CA ACA(------ ---------- ---------- 4081 ---------- ---------- UGAAA----) U-AG-U--GC -U--UGAAG- -GAGGAUUUA 4141 G-U--AGUAA A-AAGGAA(- acaga-gu-- --)GUCCUUU U-GAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -CCC--GGCU 4261 CUGAGG-CG- CGUACACA-C -CGCCCGUCA C-UCU--CCC CU-------- ---------- 4321 ---------- ---------- ---------- ---------- ---------< -gucgaaau- 4381 gcaau-gaag auaauuaaca cuaaagcacu gaca------ ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- ---------A GGGG-AGG-C AAGUCGUAAC AUGGUAAG-U GUA-CC(GGA 4621 -A)-GU-GC- ACUUGGAUUA AAU------| ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- --------|| ||| // LOCUS mt.O.mic.2 5213 bp RNA RNA 02-JUN-1998 DEFINITION Mitochondrion Orthodon microlepidotus.; . ACCESSION AF0384 9 KEYWORDS . SOURCE Mitochondrion Orthodon microlepidotus. ORGANISM Mitochondrion Orthodon microlepidotus. REFERENCE 1 (bases 1 to 2721) AUTHORS Simons,A.M. and Mayden,R.L. TITLE Phylogenetic Relationships of the Western North American Phoxinins (Actinopterygii: Cyprinidae) as Inferred from Mitochondrial 12S and 16S Ribosomal RNA Sequences JOURNAL Mol. Phylogenet. Evol. (1998) In press STANDARD No information REFERENCE 2 (bases 1 to 2721) AUTHORS Simons,A.M. and Mayden,R.L. TITLE Direct Submission JOURNAL Submitted (15-DEC-1997) Department of Biological Sciences, The University of Alabama, Box 870344, Tuscaloosa, AL 35487-0344, USA STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: AF038489 BASE COUNT 296 a 246 c 225 g 191 t 4255 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --uaaAGGCA 661 (UGG-)U-CC U|GACCU-UA UUA-UCAGCU -C-UAGC-CC |AA-CU--UA -CAC-A-UGC 721 -AAGu----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------cuc c)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------|- gUAGUCCCGU GAGUA---CG C|CCU-Uaa- --uc-cc--- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- --(cugcccg -----)---- 1261 ---------- ---------- --gg--ga-- --cGAGGAGC |--------- GGGCAUCA-- 1321 -GGCACAA-- -----(auuu u--------- ---------- ---------- ------)--- 1381 ---UU|---A GCCCA--AGA C|GCCUG-GC --|------- (-cga--)-- -------GC| 1441 CACA------ ---------- ---------- -|-CCCC--( CAAG-)--GG AAuu---C-A 1501 GCA|GUG-AU AAACAUUAAG C-CAUGAGU( ---------- ----GAAA)A CUUGA-CUC| 1561 A|-GUUA-G- GG-UUA---a aa-------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- GGGCC|-GGU 1921 -AAA-A---C UCGU-G(-CC AGCCACC-GC -GGU-UA)-G ACGAGA|--- -GGC-CCC-- 1981 AGUUG-AUAG U-------ac aaCGGC|GUA AAGGGUGGUU -A-agg---- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 ------a--- -aagcaaaac aauaaa--gu -----|CAAA uggcCC-UUU ----GGCU(G 2341 UCAUA)CGCU UC-------u AGGu-guccG AAG------- ---uccaacu aUAC(-GAAA 2401 -)GU|A---- ----gcuuua g-----aaaa gccca----- ccu-gacaCC ACGAA-AGCU 2461 G-AGA---AA CAAACUGGG( AUUAGAUAC) CCCA-CUAU| -GCUC-AGC- CAUAAA-CCC 2521 A--GAUG-UC |AA|------ ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- --a(cuac)a a-uuA-GACA 2701 U-C|--C|GC C-CGGG-UAC UACGAGC(-- -AUUA--)GC UUG--AAACC CAAAGGAC-C 2761 UG|ACGGUG- CCUUAGA-CC CCCCUAGA|G GAGCCUGU-U |CUAGA--AC CG(AUAACCC 2821 U--------- ----)CGUUA A-ACCUCACC ACUUCUAGCC ---------- ---------- 2881 (-------ac cc-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGC CUA-UA|UA- 3121 |CC|-GC--C |G------UC GU-CA|G-CU UAC-|CCU(G --UGA)AGG- -----(caa- 3181 uaa)------ a-aGUAAGCA GAA-UGGG-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ----cacaa- 3781 ---------C CCAGAA-CGU C-AGGUCGAG G|UGUA|GCG CAC------- ---------G 3841 A-A-GC-GG- GA-AGA--AA -UGGGCUACA UU--UUCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--u ua---)---- ---------- ---------- UAG-AAcac- 4021 ---------- -----UACGG --AUACG-CA ACA(------ ---------- ---------- 4081 ---------- ---------- UGAAA----) U-AG-U--GC -U--UGAAG- -GAGGAUUUA 4141 G-U--AGUAA A-AAGGAA(- acaga-gu-- --)GUCCUUU U-GAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -CCC--GGCU 4261 CUGAGG-CG- CGUACACA-C -CGCCCGUCA C-UCU--CCC CU-------- ---------- 4321 ---------- ---------- ---------- ---------- ---------< -gucgaaau- 4381 gcaau-gaag auaauuaaca cuaaagcgcu gaca------ ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- ---------A GGGG-AGG-C AAGUCGUAAC AUGGUAAG-U GUA-CC(GGA 4621 -A)-GU-GC- ACUUGGAUUA AAU------| ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- --------|| ||| // LOCUS mt.P.catos 5213 bp RNA RNA 20-OCT-1997 DEFINITION Mitochondrion Phenacobius catostomus.; . ACCESSION AF023196 KEYWORDS . SOURCE Mitochondrion Phenacobius catostomus. ORGANISM Mitochondrion Phenacobius catostomus. REFERENCE 1 (bases 1 to 953) AUTHORS Simons,A.M. and Mayden,R.L. TITLE Phylogenetic Relationships of the Creek Chubs and the Spine-Fins: an Enigmatic Group of North American Cyprinid Fishes (Actinopterygii: Cyprinidae) JOURNAL Cladistics 13 (3) (1997) In press STANDARD No information REFERENCE 2 (bases 1 to 953) AUTHORS Simons,A.M. and Mayden,R.L. TITLE Direct Submission JOURNAL Submitted (08-SEP-1997) Department of Biological Sciences, The University of Alabama, Box 870344, Tuscaloosa, AL 35487-0344, USA STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: AF023196 BASE COUNT 293 a 249 c 218 g 193 t 4260 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --uaaAGGCA 661 (UGG-)U-CC C|GACCU-UC CUG-UCAGCU -U-UAGC-CU |AA-UU--UA -CAC-A-UGC 721 -AAGu----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------cuc c)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------|- gCACCCCUGU GAGUA---CG C|CCU-Caa- --cc-cc--- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- --(ccgcccg -----)---- 1261 ---------- ---------- --gg---u-- --c-AGGAGC |--------- AGGUAUCA-- 1321 -GGCGCAA-- -----(acc- ---------- ---------- ---------- ------)--- 1381 ---UA|---A GCCCA--AGA C|GCCAA-GC --|------- (-aaa--)-- -------GC| 1441 CACA------ ---------- ---------- -|-CCCC--( CAAG-)--GG AAuu---C-A 1501 GCA|GUG-AU AAAUAUUUAG C-CAUAAGU( ---------- ----GAAA)A CUUGA-CUC| 1561 A|-GUCA-C- GG-CUA---a ga-------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- GGGCC|-GGU 1921 -AAA-A---C UCGU-G(-CC AGCCACC-GC -GGU-UA)-A ACGAGA|--- -GGC-CCU-- 1981 AGUUG-AUAG C-------gu aaCGGC|GUA AAGGGUGGUU -A-agg---- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 ------a--- -uaacacaac aauaaa--gu -----|CAAA uggcCC-UUU ----GGCU(G 2341 UCAUA)CGCU UC-------u AGGa-guccG AAG------- -cccaguuuc -UAC(-GAAA 2401 -)GU|A---- ----acuuua g-----aaga guuua----- ccu-gaccCC ACGAA-AGCU 2461 G-AGA---AA CAAACUGGG( AUUAGAUAC) CCCA-CUAU| -GCUC-AGC- CAUAAA-UCU 2521 A--GACG-UC |CU|------ ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- --u(cuac)a a--uuaGGCG 2701 U-C|--C|G- C-CGGG-UAC UAUGAGC(-- -AUUA--)GC UUA--AAACC CAAAGGAC-C 2761 UG|ACGGUG- CCUCAGA-CC CCCCUAGA|G GAGCCUGU-U |CUAGA--AC CG(AUAACCC 2821 C--------- ----)CGUUA A-ACCUCACC ACUUCUAGCC ---------- ---------- 2881 (-------ac cc-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGC CUA-UA|UA- 3121 |CC|-GC--C |G------UC GU-CA|G-CU UAC-|CCU(G --UGA)AGG- -----(aaa- 3181 ua-)------ a-aGUAAGCA AAA-CGGG-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ----uacaa- 3781 ---------C CCAGAA-CGU C-AGGUCGAG G|UGUA|GCG UAC------- ---------G 3841 A-A-AU-GG- GA-AGA--AA -UGGGCUACA UU--UUCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--u ua---)---- ---------- ---------- UAG-AAcac- 4021 ---------- -----UACGG --AUUUG-UA ACA(------ ---------- ---------- 4081 ---------- ---------- UGAAA----) U-AG-U--GC -U--UGAAG- -GAGGAUUUA 4141 G-u--AGUAA A-AAGGAA(- acagc-gu-- --)GUCCUUU U-GAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -CCC--GGCU 4261 CUGAGG-CG- CGUACACA-C -CGCCCGUCA C-UCU--CCC CU-------- ---------- 4321 ---------- ---------- ---------- ---------- ---------< -gucaaaau- 4381 gugau-aaag cuaccuaaca agaaagcuaa gaca------ ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- ---------A GGGG-AGG-C AAGUCGUAAC AUGGUAAG-U GUA-CC(GGA 4621 -A)-GU-GC- ACUUGGAUAA AAC------| ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- --------|| ||| // LOCUS mt.P.mirab 5213 bp RNA RNA 02-JUN-1998 DEFINITION Mitochondrion Phenacobius mirabilis.; . ACCESSION AF0384 2 KEYWORDS . SOURCE Mitochondrion Phenacobius mirabilis. ORGANISM Mitochondrion Phenacobius mirabilis. REFERENCE 1 (bases 1 to 2705) AUTHORS Simons,A.M. and Mayden,R.L. TITLE Mitochondrial 12S and 16S Ribosomal RNA Sequences Phylogenetic Relationships of the Western North American Phoxinins (Actinopterygii: Cyprinidae) as Inferred from JOURNAL Mol. Phylogenet. Evol. (1998) In press STANDARD No information REFERENCE 2 (bases 1 to 2705) AUTHORS Simons,A.M. and Mayden,R.L. TITLE Direct Submission JOURNAL Submitted (15-DEC-1997) Department of Biological Sciences, The University of Alabama, Box 870344, Tuscaloosa, AL 35487-0344, USA STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: AF038492 BASE COUNT 298 a 247 c 215 g 198 t 4255 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --uaaAGGCA 661 (UGG-)U-CC C|GACCU-UA CCA-UCAGCU -U-UAGC-CU |AA-CU--UA -CAC-A-UGC 721 -AAGu----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------cuc c)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------|- gCACCCCGGU GAGUG---UG C|CCU-Caa- --uc-cc--- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- --(ccgcccg -----)---- 1261 ---------- ---------- --gg---a-- --uAAGGAGC |--------- AGGUAUCA-- 1321 -GGCGCAG-- -----(accc cuc------- ---------- ---------- ------)--- 1381 ---CA|---A GCCCA--AGA C|GCCAA-GU --|------- (-aau--)-- -------GC| 1441 CACA------ ---------- ---------- -|-CCCC--( CAAG-)--GG AAuu---C-A 1501 GCA|GUG-AU AAAUAUUAAG C-CAUAAGU( ---------- ----GAAA)A CUUGA-CUC| 1561 A|-GUCA-A- AG-CUA---a uaa------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- GGGCC|-GGU 1921 -AAA-A---C UCGU-G(-CC AGCCACC-GC -GGU-UA)-A ACGAGA|--- -GGC-CCU-- 1981 AGUUG-AUUA A-------au agCGGC|GUA AAGGGUGGUU -A-aga---- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 ------a--- -uaacauaau gauaaa--gu -----|CAAA uggcCC-UUU ----GGCU(G 2341 UCAUA)CGCU UC-------u AGGa-guccG AAG------- ---cccacua aCAC(-GAAA 2401 -)GU|A---- ----acuuua a-----gcaa gucua----- ucu-gaccCC ACGAA-ACCU 2461 G-AGA---AA CAAACUGGG( AUUAGAUAC) CCCA-CUAU| -GCUC-AGC- CAUAAA-UCU 2521 A--GACG-UC |CU|------ ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- --a(uuac)a a--uU-AGGC 2701 G-U|--C|CG C-CGGG-UAC UACGAGC(-- -ACUA--)GC UUG--AAACC CAAAGGAC-C 2761 UG|ACGGUG- UCUCAGA-CC CCCCUAGA|G GAGCCUGU-U |CUAGA--AC CG(AUAACCC 2821 C--------- ----)CGUUG A-ACCUCACC ACUUCUAGCC ---------- ---------- 2881 (-------ac cc-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGC CUA-UA|UA- 3121 |CC|-GC--C |G------UC GU-CA|G-CU UAC-|CCU(G --UGA)AGG- -----(uaa- 3181 u-a)------ a-aGUAAGCA AAA-UGGG-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ----cacaa- 3781 ---------C CCAGAA-CGU C-AGGUCGAG G|UGUA|GCG UAC------- ---------G 3841 A-A-GU-GG- GA-AGA--AA -UGGGCUACA UU--UUCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--u ca---)---- ---------- ---------- UAG-AAuac- 4021 ---------- -----UACGA --AUUUG-UA ACA(------ ---------- ---------- 4081 ---------- ---------- UGAAA----) U-AG-U--GC -U--UGAAG- -GAGGAUUUA 4141 G-U--AGUAA A-AAGGAA(- gcagc-gu-- --)GUCCUUU U-GAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -CCC--GGCU 4261 CUGAGA-CG- CGUACACA-C -CGCCCGUCA C-UCU--CCC CU-------- ---------- 4321 ---------- ---------- ---------- ---------- ---------< -gucaaaau- 4381 guaau-aaag cuaccuaaua agaauacuug gaca------ ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- ---------A GGGG-AGG-C AAGUCGUAAC AUGGUAAG-U GUA-CC(GGA 4621 -A)-GU-GC- ACUUGGAUAA AAU------| ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- --------|| ||| // LOCUS mt.P.neoga 5213 bp RNA RNA 02-JUN-1998 DEFINITION Mitochondrion Phoxinus neogaeus.; . ACCESSION AF0384 3 KEYWORDS . SOURCE Mitochondrion Phoxinus neogaeus. ORGANISM Mitochondrion Phoxinus neogaeus. REFERENCE 1 (bases 1 to 2714) AUTHORS Simons,A.M. and Mayden,R.L. TITLE Mitochondrial 12S and 16S Ribosomal RNA Sequences Phylogenetic Relationships of the Western North American Phoxinins (Actinopterygii: Cyprinidae) as Inferred from JOURNAL Mol. Phylogenet. Evol. (1998) In press STANDARD No information REFERENCE 2 (bases 1 to 2714) AUTHORS Simons,A.M. and Mayden,R.L. TITLE Direct Submission JOURNAL Submitted (15-DEC-1997) Department of Biological Sciences, The University of Alabama, Box 870344, Tuscaloosa, AL 35487-0344, USA STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: AF038493 BASE COUNT 297 a 244 c 218 g 197 t 4257 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --uaaAGGCA 661 (UGG-)U-CC U|GACCU-UA UUA-UUAGCU -C-UAAC-CC |GA-CU--UA -CAC-A-UGC 721 -AAGu----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------cuc c)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------|- gCAGUCCCGU GAGUA---UG C|CCU-Uaa- --uc-cc--- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- --(cugcccg -----)---- 1261 ---------- ---------- --gg--ga-- --cGAGGAGC |--------- GGGUAUCA-- 1321 -GGCACAA-- -----(auuu u--------- ---------- ---------- ------)--- 1381 ---UU|---A GCCCA--AGA C|GCCUG-GC --|------- (-caa--)-- -------GC| 1441 CACA------ ---------- ---------- -|-CCCC--( CAAG-)--GG AAuu---C-A 1501 GCA|GUG-AU AAAUAUUGAG C-CAUAAGU( ---------- ----GAAA)A CUUGA-CUC| 1561 A|-GUCA-A- GG-CUA---a ga-------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- GGGCC|-GGU 1921 -AAA-A---C UCGU-G(-CC AGCCACC-GC -GGU-UA)-A ACGAGA|--- -GGC-CCU-- 1981 AGUUA-AUGA U-------ac aaCGGC|AUA AAGGGUGGUU -A-agg---- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 ------a--- -aagcaauau aauaaa--gu -----|CAAA uggcCC-UUU ----GGCU(G 2341 UCAUA)CGCU UC-------u AGGu-guccG AAG------- ---cccaaca -UAC(-GAAA 2401 -)GU|A---- ----gcuuua g-----aaaa gccca----- ccu-gaucCC ACGAA-AGCU 2461 G-AGA---AA CAAACUGGG( AUUAGAUAC) CCCA-CUAU| -GCUC-AGC- CAUAAA-CCU 2521 A--GACG-UC |CA|------ ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- --a(cuac)a a-uuA-GACG 2701 U-C|--C|GC C-CGGG-UAC UACGAGC(-- -AUUA--)GC UUG--AAACC CAAAGGAC-C 2761 UG|ACGGUG- CCUUAGA-CC CCCCUAGA|G GAGCCUGU-U |CUAGA--AC CG(AUAACCC 2821 U--------- ----)CGUUA A-ACCUCACC ACUUCUAGCC ---------- ---------- 2881 (-------ac cc-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGC CUA-UA|UA- 3121 |CC|-GC--C |G------UC GU-CA|G-CU UAC-|CCU(G --UGA)AGG- -----(caa- 3181 uaa)------ a-aGUAAGCA AAA-UGGG-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ----cacaa- 3781 ---------C CCAGAA-CGU C-AGGUCGAG G|UGUA|GCG UAC------- ---------G 3841 A-A-GC-GG- GA-AGA--AA -UGGGCUACA UU--UUCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--u ua---)---- ---------- ---------- CAG-AAuac- 4021 ---------- -----UACGG --AUAUG-CA ACA(------ ---------- ---------- 4081 ---------- ---------- UGAAA----) U-AG-U--AC -U--UGAAG- -GAGGAUUUA 4141 G-U--AGUAA A-AAGGAA(- gcaga-gu-- --)GUCCUUU U-GAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -CCC--GGCU 4261 CUGAGG-CG- CGUACACA-C -CGCCCGUCA C-UCU--CCC CU-------- ---------- 4321 ---------- ---------- ---------- ---------- ---------< -gucaaauu- 4381 gcaac-aaaa auauuuaaug ccaaagcacu gaca------ ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- ---------A GGGG-AGG-C AAGUCGUAAC AUGGUAAG-U GUA-CC(GGA 4621 -A)-GU-GC- ACUUGGAUUA AU-------| ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- --------|| ||| // LOCUS mt.P.eryth 5213 bp RNA RNA 02-JUN-1998 DEFINITION Mitochondrion Phoxinus erythrogaster.; . ACCESSION AF0384 0 KEYWORDS . SOURCE Mitochondrion Phoxinus erythrogaster. ORGANISM Mitochondrion Phoxinus erythrogaster. REFERENCE 1 (bases 1 to 2661) AUTHORS Simons,A.M. and Mayden,R.L. TITLE Phylogenetic Relationships of the Western North American Phoxinins (Actinopterygii: Cyprinidae) as Inferred from Mitochondrial 12S and 16S Ribosomal RNA Sequences JOURNAL Mol. Phylogenet. Evol. (1998) In press STANDARD No information REFERENCE 2 (bases 1 to 2661) AUTHORS Simons,A.M. and Mayden,R.L. TITLE Direct Submission JOURNAL Submitted (15-DEC-1997) Department of Biological Sciences, The University of Alabama, Box 870344, Tuscaloosa, AL 35487-0344, USA STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: AF038490 BASE COUNT 278 a 236 c 213 g 178 t 4308 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --~~~~~~~~ 661 (~~~-)~-~~ ~|~~~~~-~~ ~~~-~~~~~~ -~-~~~~-~~ |~~-~~--~~ -~~~-~-~~C 721 -AAGu----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------cuc c)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------|- gCAGCCCCGU GAGUA---UG C|CCU-Uaa- --uc-cc--- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- --(cugcccg -----)---- 1261 ---------- ---------- --gg--ga-- --cGAGGAGC |--------- GGGUAUCA-- 1321 -GGCACAA-- -----(acuu ---------- ---------- ---------- ------)--- 1381 ---UU|---A GCCCA--GGA C|GCCUG-GC --|------- (-caa--)-- -------GC| 1441 CACA------ ---------- ---------- -|-CCCC--( CAAG-)--GG AAuu---C-A 1501 GCA|GUG-AU AAAUAUUAAG C-CAUAAGU( ---------- ----GAAA)A CUUGA-CUU| 1561 A|-GUCA-G- GG-CUA---a ga-------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- GGGCC|-GGU 1921 -AAA-A---C UCGU-G(-CC AGCCACC-GC -GGU-UA)-A ACGAGA|--- -GGC-CCU-- 1981 AGUUA-ACAA U-------ac aaCGGC|GUA AAGGGUGGUU -A-agg---- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 ------a--- -gugcaaaac aauaaa--gc -----|CGAA uggcCC-UUU ----GGCU(G 2341 UCAUA)CGCU UC-------u AGGu-guccG AAG------- ---cccaaca -UAC(-GAAA 2401 -)GU|A---- ----gcuuua g-----caaa aucca----- ccu-gaccCC ACGAA-AGCU 2461 G-AGA---AA CAAACUGGG( AUUAGAUAC) CCCA-CUAU| -GCUC-AGC- CAUAAA-CCU 2521 A--GACG-UC |CA|------ ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- --a(cuac)a a-uuA-GACG 2701 U-C|--C|GC C-CGGG-UAC UACGAGC(-- -AUUA--)GC UUG--AAACC CAAAGGAC-C 2761 UG|ACGGUG- CCUUAGA-CC CCCCUAGA|G GAGCCUGU-U |CUAGA--AC CG(AUAACCC 2821 U--------- ----)CGUUA A-ACCUCACC ACUUCUAGCC ---------- ---------- 2881 (-------ac cc-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGC CUA-UA|UA- 3121 |CC|-GC--C |G------UC GU-CA|G-CU UAC-|CCU(G --UGA)AGG- -----(caa- 3181 uaa)------ a-aGUAAGCA AAA-UGGG-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ----cacaa- 3781 ---------C CCAGAA-CGU C-AGGUCGAG G|UGUA|GCG UAC------- ---------G 3841 A-A-GC-GG- GA-AGA--AA -UGGGCUACA UU--UUCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--u aa---)---- ---------- ---------- UAG-AAuac- 4021 ---------- -----UACGG --ACAUG-CA ACA(------ ---------- ---------- 4081 ---------- ---------- UGAAA----) U-AG-U--GC -U--UGAAG- -GAGGAUUUA 4141 G-U--AGUAA A-AAGGAA(- gcagc-gu-- --)GUCCUUU U-GAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -CCC--GGCU 4261 CUGAGG-CG- CGUACACA-C -CGCCCGUCA C-UCU--CCC CU-------- ---------- 4321 ---------- ---------- ---------- ---------- ---------< -gucaaauu- 4381 gcaau-aaua auauuuaaug ccaaagcacu gaca------ ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- ---------A GGGG-AGG-C AAGUCGUAAC AUGGUAAG-U GUA-CC(GGA 4621 -A)-GU-GC- ACUUGGAUUA AU-------| ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- --------|| ||| // LOCUS mt.P.graci 5213 bp RNA RNA 20-OCT-1997 DEFINITION Mitochondrion Platygobio gracilis.; . ACCESSION AF023197 KEYWORDS . SOURCE Mitochondrion Platygobio gracilis. ORGANISM Mitochondrion Platygobio gracilis. REFERENCE 1 (bases 1 to 955) AUTHORS Simons,A.M. and Mayden,R.L. TITLE Phylogenetic Relationships of the Creek Chubs and the Spine-Fins: an Enigmatic Group of North American Cyprinid Fishes (Actinopterygii: Cyprinidae) JOURNAL Cladistics 13 (3) (1997) In press STANDARD No information REFERENCE 2 (bases 1 to 955) AUTHORS Simons,A.M. and Mayden,R.L. TITLE Direct Submission JOURNAL Submitted (08-SEP-1997) Department of Biological Sciences, The University of Alabama, Box 870344, Tuscaloosa, AL 35487-0344, USA STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: AF023197 BASE COUNT 294 a 255 c 222 g 184 t 4258 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --caaAGGCA 661 (UGG-)U-CC C|GACCU-UA CUA-UCAGCU -C-UAGC-CC |AA-CU--UA -CAC-A-UGC 721 -AAGu----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------cuc c)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------|- gCAGCCCCGU GAGUA---AG C|CCU-Uaa- --uc-cc--- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- --(ccgccc- -----)---- 1261 ---------- ---------- --gg--ga-- --cGAGGAGC |--------- AGGCAUCA-- 1321 -GGCACAA-- -----(accu ---------- ---------- ---------- ------)--- 1381 ---UU|---A GCCCA--AGA C|GCCAG-GC --|------- (-cua--)-- -------GC| 1441 CACA------ ---------- ---------- -|-CCCC--( CAAG-)--GG AAuu---C-A 1501 GCA|GUG-AU AAAUAUUAAG C-CAUAAGU( ---------- ----GAAA)A CUUGA-CUC| 1561 A|-GUCA-G- AG-CUA---a ga-------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- GGGCC|-GGU 1921 -AAA-A---C UCGU-G(-CC AGCCACC-GC -GGU-UA)-A ACGAGA|--- -GGC-CCU-- 1981 AGUUG-AUAG U-------gc aaCGGC|GUA AAGGGUGGUU -A-agg---- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 ------a--- -uagugaaac aauaaa--gu -----|CGAA uggcCC-UUU ----GGCU(G 2341 UCAUA)CGCU UC-------u AGGa-guccG AAG------- ---cccaaua -UAC(-GAAA 2401 -)GU|A---- ----gcuuua g-----gaaa gucca----- ccu-gaccCC ACGAA-AACU 2461 G-AGA---AA CAAACUGGG( AUUAGAUAC) CCCA-CUAU| -GCUC-AGU- CAUAAA-CCC 2521 A--GACG-UC |CG|------ ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- --a(cuac)a a--uuaGACG 2701 U-C|--C|GC C-CGGG-UAC UACGAGC(-- -AUUA--)GC UUG--AAACC CAAAGGAC-C 2761 UG|ACGGUG- CCUCAGA-CC CCCCUAGA|G GAGCCUGU-U |CUAGA--AC CG(AUAACCC 2821 C--------- ----)CGUUA A-ACCUCACC ACUUCUAGCC ---------- ---------- 2881 (-------au cc-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGC CUA-UA|UA- 3121 |CC|-GC--C |G------UC GU-CA|G-CU UAC-|CCU(G --UGA)AGG- -----(caa- 3181 uaa)------ a-aGUAAGCA AAA-UGGG-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ----cacaa- 3781 ---------C CCAGAA-CGU C-AGGUCGAG G|UGUA|GCG UAC------- ---------G 3841 A-A-GC-GG- GA-AGA--AA -UGGGCUACA UU--UUCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--u ua---)---- ---------- ---------- UAG-AAuac- 4021 ---------- -----UACGG --ACAUG-CA ACA(------ ---------- ---------- 4081 ---------- ---------- UGAAA----) U-AG-U--GC -U--UGAAG- -GAGGAUUUA 4141 G-u--AGUAA A-AAGGAA(- gcaga-gu-- --)GUCCUUU U-GAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -CCC--GGCU 4261 CUGAGA-CG- CGUACACA-C -CGCCCGUCA C-UCU--CCC CU-------- ---------- 4321 ---------- ---------- ---------- ---------- ---------< -gucgaaau- 4381 gcaau-aaag cuucuuaaca ccaaagcucu gaca------ ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- ---------A GGGG-AGG-C AAGUCGUAAC AUGGUAAG-U GUA-CC(GGA 4621 -A)-GU-GC- ACUUGGAUAA AAU------| ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- --------|| ||| // LOCUS mt.P.orego 5213 bp RNA RNA 02-JUN-1998 DEFINITION Mitochondrion Ptychocheilus oregonensis.; . ACCESSION AF0384 4 KEYWORDS . SOURCE Mitochondrion Ptychocheilus oregonensis. ORGANISM Mitochondrion Ptychocheilus oregonensis. REFERENCE 1 (bases 1 to 2718) AUTHORS Simons,A.M. and Mayden,R.L. TITLE Mitochondrial 12S and 16S Ribosomal RNA Sequences Phylogenetic Relationships of the Western North American Phoxinins (Actinopterygii: Cyprinidae) as Inferred from JOURNAL Mol. Phylogenet. Evol. (1998) In press STANDARD No information REFERENCE 2 (bases 1 to 2718) AUTHORS Simons,A.M. and Mayden,R.L. TITLE Direct Submission JOURNAL Submitted (15-DEC-1997) Department of Biological Sciences, The University of Alabama, Box 870344, Tuscaloosa, AL 35487-0344, USA STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: AF038494 BASE COUNT 294 a 247 c 222 g 191 t 4259 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --uaaAGGCA 661 (UGG-)U-CC U|GACCU-UA UUA-UCAGCU -C-UAAC-CC |AA-CU--UA -CAC-A-UGC 721 -AAGu----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------cuc c)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------|- gCAGUCCUGU GAGUA---CG C|CCU-Uaa- --uc-cc--- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- --(cugcccg -----)---- 1261 ---------- ---------- --gg--ga-- --cGAGGAGC |--------- GGGCAUCA-- 1321 -GGCACAA-- -----(auuu ---------- ---------- ---------- ------)--- 1381 ---UU|---A GCCCA--AGA C|GCCUG-GC --|------- (-caa--)-- -------GC| 1441 CACA------ ---------- ---------- -|-CCCC--( CAAG-)--GG AAuu---C-A 1501 GCA|GUG-AU AAAUAUUAAG C-CAUGAGU( ---------- ----GAAA)A CUUGA-CUC| 1561 A|-GUCA-G- GG-UUA---a ga-------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- GGGCC|-GGU 1921 -AAA-A---C UCGU-G(-CC AGCCACC-GC -GGU-UA)-A ACGAGA|--- -GGC-CCU-- 1981 AGUUG-AUAG U-------ac aaCGGC|GUA AAGGGUGGUU -A-agg---- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 ------a--- -acgca-agc aauaaa--gc -----|CGAA cggcCC-UUU ----GGCU(G 2341 UCAUA)CGCU UC-------u AGGu-guccG AAG------- ---cccaaua -UAC(-GAAA 2401 -)GU|A---- ----gcuuua g-----aaaa gccca----- ccu-gacaCC ACGAA-AGCU 2461 G-AGA---AA CAAACUGGG( AUUAGAUAC) CCCA-CUAU| -GCUC-AGC- CAUAAA-CCU 2521 A--GAUG-UC |CA|------ ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---(cuac)a a-uuA-GACA 2701 U-C|--C|GC C-CGGG-UAC UACGAGC(-- -AUUA--)GC UUG--AAACC CAAAGGAC-C 2761 UG|ACGGUG- CCUUAGA-CC CCCCUAGA|G GAGCCUGU-U |CUAGA--AC CG(AUAACCC 2821 U--------- ----)CGUUA A-ACCUCACC ACUUCUAGCC ---------- ---------- 2881 (-------ac cc-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGC CUA-UA|UA- 3121 |CC|-GC--C |G------UC GU-CA|G-CU UAC-|CCU(G --UGA)AGG- -----(caa- 3181 uaa)------ a-aGUAAGCA AAA-UGGG-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ----cacaa- 3781 ---------C CCAGAA-CGU C-AGGUCGAG G|UGUA|GCG UAC------- ---------G 3841 A-A-GC-GG- GA-AGA--AA -UGGGCUACA UU--UUCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--u ua---)---- ---------- ---------- UAG-AAcac- 4021 ---------- -----UACGG --ACAUG-CA ACA(------ ---------- ---------- 4081 ---------- ---------- UGAAA----) U-AG-U--GC -U--UGAAG- -GAGGAUUUA 4141 G-U--AGUAA A-AAGGAA(- acaga-gu-- --)GUCCUUU U-GAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -CCC--GGCU 4261 CUGAGG-CG- CGUACACA-C -CGCCCGUCA C-UCU--CCC CU-------- ---------- 4321 ---------- ---------- ---------- ---------- ---------< -gucaaaau- 4381 gcaau-aaag auauuuaaua ccaaagcgcu gaca------ ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- ---------A GGGG-AGG-C AAGUCGUAAC AUGGUAAG-U GUA-CC(GGA 4621 -A)-GU-GC- ACUUGGAUUA AAU------| ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- --------|| ||| // LOCUS mt.R.solit 5213 bp RNA RNA 02-JUN-1998 DEFINITION Mitochondrion Relictus solitarius.; . ACCESSION AF0384 6 KEYWORDS . SOURCE Mitochondrion Relictus solitarius. ORGANISM Mitochondrion Relictus solitarius. REFERENCE 1 (bases 1 to 2717) AUTHORS Simons,A.M. and Mayden,R.L. TITLE Mitochondrial 12S and 16S Ribosomal RNA Sequences Phylogenetic Relationships of the Western North American Phoxinins (Actinopterygii: Cyprinidae) as Inferred from JOURNAL Mol. Phylogenet. Evol. (1998) In press STANDARD No information REFERENCE 2 (bases 1 to 2717) AUTHORS Simons,A.M. and Mayden,R.L. TITLE Direct Submission JOURNAL Submitted (15-DEC-1997) Department of Biological Sciences, The University of Alabama, Box 870344, Tuscaloosa, AL 35487-0344, USA STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: AF038496 BASE COUNT 292 a 243 c 226 g 194 t 4258 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --uaaAGGCA 661 (UGG-)U-CC U|GACCU-UA UUA-UCAGCU -C-UAAC-CC |AA-CU--UA -CAC-A-UGC 721 -AAGu----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------cuc c)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------|- gCAGCCCUGU GAGUA---CG C|CCU-Uaa- --uc-cc--- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- --(cugcccg -----)---- 1261 ---------- ---------- --gg--ga-- --cGAGGAGC |--------- GGGCAUCA-- 1321 -GGCACAA-- -----(auuu ---------- ---------- ---------- ------)--- 1381 ---UU|---A GCCCA--AGA C|GCCUG-GC --|------- (-caa--)-- -------GC| 1441 CACA------ ---------- ---------- -|-CCCC--( CAAG-)--GG AAuu---C-A 1501 GCA|GUG-AU AAAUAUUAAG C-CAUGAGU( ---------- ----GAAA)A CUUGA-CUC| 1561 A|-GUCA-G- GG-UUA---a ga-------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- GGGCC|-GGU 1921 -AAA-A---C UCGU-G(-CC AGCCACC-GC -GGU-UA)-A ACGAGA|--- -GGC-CCU-- 1981 AGUUG-AUAG U-------ac aaCGGC|GUA AAGGGUGGUU -A-agg---- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 ------a--- --gaguaaac aauaaa--gc -----|CGAA uggcCC-UUU ----GGCU(G 2341 UCAUA)CGCU UC-------u AGGu-guccG AAG------- ---cccaaua -UAC(-GAAA 2401 -)GU|A---- ----gcuuua g-----gaaa gccca----- ccu-gacaCC ACGAA-AGCU 2461 G-AGG---AA CAAACUGGG( AUUAGAUAC) CCCA-CUAU| -GCUC-AGC- CAUAAA-CUU 2521 A--GACG-UC |CA|------ ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- --a(cuac)a a-uuA-GACG 2701 U-C|--C|GC C-CGGG-UAC UACGAGC(-- -AUUA--)GC UUG--AAACC CAAAGGAC-C 2761 UG|ACGGUG- CCUUAGA-CC CCCCUAGA|G GAGCCUGU-U |CUAGA--AC CG(AUAACCC 2821 U--------- ----)CGUUA A-ACCUCACC ACUUCUAGCC ---------- ---------- 2881 (-------ac cc-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGC CUA-UA|UA- 3121 |CC|-GC--C |G------UC GU-CA|G-CU UAC-|CCU(G --UGA)AGG- -----(caa- 3181 uaa)------ a-aGUAAGCA AAA-UGGG-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ----cacaa- 3781 ---------C CCAGAA-CGU C-AGGUCGAG G|UGUA|GCG UAC------- ---------G 3841 A-A-GC-GG- GA-AGA--AA -UGGGCUACA UU--UUCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--u ua---)---- ---------- ---------- UAG-AAcac- 4021 ---------- -----UACGG --AUAUG-CA ACA(------ ---------- ---------- 4081 ---------- ---------- UGAAA----) U-AG-U--GC -U--UGAAG- -GAGGAUUUA 4141 G-U--AGUAA A-AAGGAA(- acaga-gu-- --)GUCCUUU U-GAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -CCC--GGCU 4261 CUGAGG-CG- CGUACACA-C -CGCCCGUCA C-UCU--CCC CU-------- ---------- 4321 ---------- ---------- ---------- ---------- ---------< -gucaaauu- 4381 gcagu-aaaa auacuuaaua auaaagcgcu gacg------ ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- ---------A GGGG-AGG-C AAGUCGUAAC AUGGUAAG-U GUA-CC(GGA 4621 -A)-GU-GC- ACUUGGAUUA AAU------| ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- --------|| ||| // LOCUS mt.R.atrat 5213 bp RNA RNA 20-OCT-1997 DEFINITION Mitochondrion Rhinichthys atratulus.; . ACCESSION AF023198 KEYWORDS . SOURCE Mitochondrion Rhinichthys atratulus. ORGANISM Mitochondrion Rhinichthys atratulus. REFERENCE 1 (bases 1 to 956) AUTHORS Simons,A.M. and Mayden,R.L. TITLE Phylogenetic Relationships of the Creek Chubs and the Spine-Fins: an Enigmatic Group of North American Cyprinid Fishes (Actinopterygii: Cyprinidae) JOURNAL Cladistics 13 (3) (1997) In press STANDARD No information REFERENCE 2 (bases 1 to 956) AUTHORS Simons,A.M. and Mayden,R.L. TITLE Direct Submission JOURNAL Submitted (08-SEP-1997) Department of Biological Sciences, The University of Alabama, Box 870344, Tuscaloosa, AL 35487-0344, USA STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: AF023198 BASE COUNT 291 a 252 c 227 g 186 t 4257 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --uaaAGGCA 661 (UGG-)U-CC U|GACCU-UA UUA-UCAGCU -C-UAAC-CC |AA-CU--UA -CAC-A-UGC 721 -AAGu----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------cuc c)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------|- gCAGCCCCGU GAGUA---CG C|CCU-Caa- --uc-cc--- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- --(cugcccg -----)---- 1261 ---------- ---------- --gg--ga-- --cGAGGAGC |--------- AGGCAUCA-- 1321 -GGCACAA-- -----(acau ---------- ---------- ---------- ------)--- 1381 ---UU|---A GCCCA--AGA C|GCCUG-GC --|------- (-cua--)-- -------GC| 1441 CACA------ ---------- ---------- -|-CCCC--( CAAG-)--GG AAuu---C-A 1501 GCA|GUG-AU AAAUAUUAAG C-CAUAAGU( ---------- ----GAAA)A CUUGA-CUC| 1561 A|-GACA-G- GG-UUA---a ga-------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- GGGCC|-GGU 1921 -AAA-A---C UCGU-G(-CC AGCCACC-GC -GGU-UA)-A ACGAGA|--- -GGC-CCU-- 1981 AGUUG-AUAG U-------ac aaCGGC|GUA AAGGGUGGUU -A-agg---- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 ------g--- -uaauaaauu aauaaa--gu -----|CGAA uggcCC-UUU ----GGCU(G 2341 UCAUA)CGCU UC-------u AGGa-guccG AAG------- ---cccaaua -UAC(-GAAA 2401 -)GU|A---- ----gcuuua g-----gaaa gccca----- ccu-gaccCC ACGAA-AGCU 2461 G-AGG---AA CAAACUGGG( AUUAGAUAC) CCCA-CUAU| -GCUC-AGC- CAUAAA-CCC 2521 A--GGCG-UC |GA|------ ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- --a(cuac)a --guuaGACG 2701 U-C|--C|GC C-CGGG-UAC UACGAGC(-- -AUUA--)GC UUG--AAACC CAAAGGAC-C 2761 UG|ACGGUG- CCUCAGA-CC CCCCUAGA|G GAGCCUGU-U |CUAGA--AC CG(AUAACCC 2821 C--------- ----)CGUUA A-ACCUCACC ACUUCUAGCC ---------- ---------- 2881 (-------ac cc-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGC CUA-UA|UA- 3121 |CC|-GC--C |G------UC GU-CA|G-CU UAC-|CCU(G --UGA)AGG- -----(caa- 3181 uaa)------ a-aGUAAGCA AAA-UGGG-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ----cacaa- 3781 ---------C CCAGAA-CGU C-AGGUCGAG G|UGUA|GCG UAC------- ---------G 3841 A-A-GC-GG- GA-AGA--AA -UGGGCUACA UU--UUCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--u ua---)---- ---------- ---------- UAG-AAcac- 4021 ---------- -----UACGG --AUGUG-CA ACA(------ ---------- ---------- 4081 ---------- ---------- UGAAA----) U-AG-U--GC -C--UGAAG- -GAGGAUUUA 4141 G-u--AGUAA A-AAGGAA(- gcaga-gu-- --)GUCCUUU U-GAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -CCC--GGCU 4261 CUGAGA-CG- CGUACACA-C -CGCCCGUCA C-UCU--CCC CU-------- ---------- 4321 ---------- ---------- ---------- ---------- ---------< -gucaaagu- 4381 gcaau-aaag cuaccuaaca ucauagcagu gaca------ ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- ---------A GGGG-AGG-C AAGUCGUAAC AUGGUAAG-U GUA-CC(GGA 4621 -A)-GU-GC- ACUUGGAUUA AAU------| ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- --------|| ||| // LOCUS mt.S.bicol 5213 bp RNA RNA 02-JUN-1998 DEFINITION Mitochondrion Siphateles bicolor.; . ACCESSION AF0384 7 KEYWORDS . SOURCE Mitochondrion Siphateles bicolor. ORGANISM Mitochondrion Siphateles bicolor. REFERENCE 1 (bases 1 to 2712) AUTHORS Simons,A.M. and Mayden,R.L. TITLE Phylogenetic Relationships of the Western North American Phoxinins (Actinopterygii: Cyprinidae) as Inferred from Mitochondrial 12S and 16S Ribosomal RNA Sequences JOURNAL Mol. Phylogenet. Evol. (1998) In press STANDARD No information REFERENCE 2 (bases 1 to 2712) AUTHORS Simons,A.M. and Mayden,R.L. TITLE Direct Submission JOURNAL Submitted (15-DEC-1997) Department of Biological Sciences, The University of Alabama, Box 870344, Tuscaloosa, AL 35487-0344, USA STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: AF038497 BASE COUNT 295 a 249 c 221 g 189 t 4259 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --caaAGGCA 661 (UGG-)U-CC U|GACCU-UA UUA-UCAGCU -C-UAAC-CC |AA-CU--UA -CAC-A-UGC 721 -AAGu----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------cuc c)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------|- gCAGUCCUGU GAGUA---CG C|CCU-Uaa- --uc-cc--- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- --(cugcccg -----)---- 1261 ---------- ---------- --gg--ga-- --cGAGGAGC |--------- GGGCAUCA-- 1321 -GGCACAA-- -----(auuu ---------- ---------- ---------- ------)--- 1381 ---UU|---A GCCCA--AGA C|GCCUG-GC --|------- (-caa--)-- -------GC| 1441 CACA------ ---------- ---------- -|-CCCC--( CAAG-)--GG AAuu---C-A 1501 GCA|GUG-AU AAAUAUUAAG C-CAUAAGU( ---------- ----GAAA)A CUUGA-CUC| 1561 A|-GUUA-G- GG-UUG---a ga-------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- GGGCC|-GGU 1921 -AAA-A---C UCGU-G(-CC AGCCACC-GC -GGU-UA)-A ACGAGA|--- -GGC-CCU-- 1981 AGUUG-AUAA U-------ac aaCGGC|GUA AAGGGUGGUU -A-agg---- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 ------a--- -acgca-aac aauaaa--gc -----|CGAA uggcCC-UUU ----GGCU(G 2341 UCAUA)CGCU UC-------u AGGu-guccG AAG------- ---cccaaua -UAC(-GAAA 2401 -)GU|A---- ----gcuuua a-----gaac gccca----- ccu-gacaCC ACGAA-AGCU 2461 G-AGA---AA CAAACUGGG( AUUAGAUAC) CCCA-CUAU| -GCUC-AGC- CAUAAA-CCU 2521 A--GAUG-UC |CA|------ ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- --g(cuac)a a-uuA-GACA 2701 U-C|--C|GC C-CGGG-UAC UACGAGC(-- -AUUA--)GC UUG--AAACC CAAAGGAC-C 2761 UG|ACGGUG- CCUUAGA-CC CCCCUAGA|G GAGCCUGU-U |CUAGA--AC CG(AUAACCC 2821 U--------- ----)CGUUA A-ACCUCACC ACUUCUAGCC ---------- ---------- 2881 (-------ac cc-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGC CUA-UA|UA- 3121 |CC|-GC--C |G------UC GU-CA|G-CU UAC-|CCU(G --UGA)AGG- -----(caa- 3181 uaa)------ a-aGUAAGCA AAA-UGGG-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ----cacaa- 3781 ---------C CCAGAA-CGU C-AGGUCGAG G|UGUA|GCG UAC------- ---------G 3841 A-A-GC-GG- GA-AGA--AA -UGGGCUACA UU--UUCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--u ua---)---- ---------- ---------- UAG-AAcac- 4021 ---------- -----CACGG --ACAUG-CA ACA(------ ---------- ---------- 4081 ---------- ---------- UGAAA----) U-AG-U--GC -U--UGAAG- -GAGGAUUUA 4141 G-U--AGUAA A-AAGGAA(- acaga-gu-- --)GUCCUUU U-GAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -CCC--GGCU 4261 CUGAGG-CG- CGUACACA-C -CGCCCGUCA C-UCU--CCC CU-------- ---------- 4321 ---------- ---------- ---------- ---------- ---------< -gucaaaau- 4381 gcaau-aaag auaucuaaca cnaaagcgcu gaca------ ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- ---------A GGGG-AGG-C AAGUCGUAAC AUGGUAAG-U GUA-CC(GGA 4621 -A)-GU-GC- ACUUGGAUUA AAU------| ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- --------|| ||| // LOCUS mt.S.copei 5213 bp RNA RNA 20-OCT-1997 DEFINITION Mitochondrion Snyderichthys copei.; . ACCESSION AF023201 KEYWORDS . SOURCE Mitochondrion Snyderichthys copei. ORGANISM Mitochondrion Snyderichthys copei. REFERENCE 1 (bases 1 to 956) AUTHORS Simons,A.M. and Mayden,R.L. TITLE Phylogenetic Relationships of the Creek Chubs and the Spine-Fins: an Enigmatic Group of North American Cyprinid Fishes (Actinopterygii: Cyprinidae) JOURNAL Cladistics 13 (3) (1997) In press STANDARD No information REFERENCE 2 (bases 1 to 956) AUTHORS Simons,A.M. and Mayden,R.L. TITLE Direct Submission JOURNAL Submitted (08-SEP-1997) Department of Biological Sciences, The University of Alabama, Box 870344, Tuscaloosa, AL 35487-0344, USA STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: AF023201 BASE COUNT 286 a 251 c 229 g 190 t 4257 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --uaaAGGCA 661 (UGG-)U-CC U|GACCU-UA UUA-UCAGCU -C-UAAC-CC |AA-CU--UA -CAC-A-UGC 721 -AAGu----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------cuc c)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------|- gCAGCCCCGU GAGUA---UG C|CCU-Uaa- --uc-cc--- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- --(cugcccg -----)---- 1261 ---------- ---------- --gg--ga-- --cGAGGAGC |--------- GGGCAUCA-- 1321 -GGCACAA-- -----(auuu ---------- ---------- ---------- ------)--- 1381 ---UU|---A GCCCA--AGA C|GCCUG-GC --|------- (-cua--)-- -------GC| 1441 CACA------ ---------- ---------- -|-CCCC--( CAAG-)--GG AAuu---C-A 1501 GCA|GUG-AU AAAUAUUAAG C-CAUGAGU( ---------- ----GAAA)A CUUGA-CUC| 1561 A|-GUCA-G- GG-UUA---a ga-------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- GGGCC|-GGU 1921 -AAA-A---C UCGU-G(-CC AGCCACC-GC -GGU-UA)-A ACGAGA|--- -GGC-CCU-- 1981 AGUUG-AUGC U-------ac aaCGGC|GUA AAGGGUGGUU -A-agg---- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 ------a--- -gcgcaaaac aauaaa--gc -----|CGAA uggcCC-UUU ----GGCU(G 2341 UCAUA)CGCU UC-------U AGGu-gcccG AAG------- ---cccaaua -UAC(-GAAA 2401 -)GU|A---- ----gcuuua a-----gaga gccca----- ccu-gaccCC ACGAA-AGCU 2461 G-AGG---AA CAAACUGGG( AUUAGAUAC) CCCA-CUAU| -GCUC-AGC- CAUAAA-CCU 2521 A--GAUG-UC |CA|------ ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- --g(cuac)a g--uuaGACA 2701 U-C|--C|GC C-CGGG-UAC UACGAGC(-- -AUUA--)GC UUG--AAACC CAAAGGAC-C 2761 UG|ACGGUG- CCUUAGA-CC CCCCUAGA|G GAGCCUGU-U |CUAGA--AC CG(AUAACCC 2821 U--------- ----)CGUUA A-ACCUCACC ACUCCUAGCC ---------- ---------- 2881 (-------ac cc-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGC CUA-UA|UA- 3121 |CC|-GC--C |G------UC GU-CA|G-CU UAC-|CCU(G --UGA)AGG- -----(aaa- 3181 uaa)------ a-aGUAAGCA AAA-UGGG-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ----cauaa- 3781 ---------C CCAGAA-CGU C-AGGUCGAG G|UGUA|GCG UAC------- ---------G 3841 G-A-GU-GG- GA-AGA--AA -UGGGCUACA UU--UUCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--u ua---)---- ---------- ---------- UAG-AAuac- 4021 ---------- -----UACGG --AUAUG-CA ACA(------ ---------- ---------- 4081 ---------- ---------- UGAAA----) U-AG-U--GC -U--UGAAG- -GAGGAUUUA 4141 G-u--AGUAA A-AAGGAA(- gcaga-gu-- --)GUCCUUU U-GAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -CUC--GGCU 4261 CUGAGG-CG- CGUACACA-C -CGCCCGUCA C-UCU--CCC CU-------- ---------- 4321 ---------- ---------- ---------- ---------- ---------< -gucaaaau- 4381 gcaac-aaag auaccuaacc cagacgcgcc gaca------ ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- ---------A GGGG-AGG-C AAGUCGUAAC AUGGUAAG-U GUA-CC(GGA 4621 -A)-GU-GC- ACUUGGAUUA AAU------| ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- --------|| ||| // LOCUS mt.M.fulgi 5213 bp RNA RNA 20-OCT-1997 DEFINITION Mitochondrion Meda fulgida.; . ACCESSION AF023193 KEYWORDS . SOURCE Mitochondrion Meda fulgida. ORGANISM Mitochondrion Meda fulgida. REFERENCE 1 (bases 1 to 953) AUTHORS Simons,A.M. and Mayden,R.L. TITLE Phylogenetic Relationships of the Creek Chubs and the Spine-Fins: an Enigmatic Group of North American Cyprinid Fishes (Actinopterygii: Cyprinidae) JOURNAL Cladistics 13 (3) (1997) In press STANDARD No information REFERENCE 2 (bases 1 to 953) AUTHORS Simons,A.M. and Mayden,R.L. TITLE Direct Submission JOURNAL Submitted (08-SEP-1997) Department of Biological Sciences, The University of Alabama, Box 870344, Tuscaloosa, AL 35487-0344, USA STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: AF023193 BASE COUNT 280 a 252 c 226 g 195 t 4260 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --uaaAGGCA 661 (UGG-)U-CC U|GACCU-UA UUA-UCAGCU -A-UAAC-CU |AA-CU--UA -CAC-A-UGC 721 -AAGu----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------cuc c)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------|- gCAACCCUGU GAGUA---UG C|CCU-Uaa- --uc-cc--- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- --(cugcccg -----)---- 1261 ---------- ---------- --gg--ga-- --cGAGGAGC |--------- GGGCAUCA-- 1321 -GGCACAA-- -----(auuu ---------- ---------- ---------- ------)--- 1381 ---UU|---A GCCCA--AGA C|GCCUG-GC --|------- (-cua--)-- -------GC| 1441 CACA------ ---------- ---------- -|-CCCC--( CAAG-)--GA A-uu---C-A 1501 GCA|GUG-AU AGAUAUUGAG C-UAUAAGC( ---------- ----GAAA)G CUUGA-CUC| 1561 A|-GUCA-G- GG-UUA---a ga-------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- GGGCC|-GGU 1921 -AAA-A---C UCGU-G(-CC AGCCACC-GC -GGU-UA)-G ACGAGA|--- -GGC-CCC-- 1981 AGUUG-AUUC U-------ac aaCGGC|GUA AAGAGUGGUU -A-agg---- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 ------a--- -gcgcauaau aauaaa--gc -----|CGAA cggcCC-UUU ----GGCU(G 2341 UCAUA)CGCU UC-------u AGGc-gcccG AAG------- ---cccgaua -UAC(-GAAA 2401 -)GU|A---- ----gcuuua g-----uaaa gccca----- ccu-gaccCC ACGAA-AGCU 2461 G-AGG---AA CAAACUGGG( AUUAGAUAC) CCCA-CUAU| -GCUC-AGC- CGUAAA-CCU 2521 A--GAUG-UC |CA|------ ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- --c(cuac)g a----uGACA 2701 U-C|--C|GC C-CGGG-UAC UACGAGC(-- -AUUA--)GC UUG--AAACC CAAAGGAC-C 2761 UG|ACGGUG- CCUUAGA-CC CCCCUAGA|G GAGCCUGU-U |CUAGA--AC CG(AUAACCC 2821 U--------- ----)CGUUA A-ACCUCACC ACUUCUAGCC ---------- ---------- 2881 (-------au cc-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGC CUA-UA|UA- 3121 |CC|-GC--C |G------UC GU-CA|G-CU UAC-|CCU(G --UGA)AGG- -----(caa- 3181 uaa)------ a-aGUAAGCA AAA-UGGG-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ----cauaa- 3781 ---------C CCAAAA-CGU C-AGGUCGAG G|UGUA|GCG UAC------- ---------G 3841 A-A-GU-GG- GA-AGA--AA -UGGGCUACA UU--UUCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--u ua---)---- ---------- ---------- UAG-AAuac- 4021 ---------- -----UACGG --AUAUG-CA ACA(------ ---------- ---------- 4081 ---------- ---------- UGAAA----) C-UG-U--GC -U--UGAAG- -GAGGAUUUA 4141 G-u--AGUAA A-AAGGAA(- gcagc-gu-- --)GUCCUUU U-GAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -CCC--GGCU 4261 CUUAGG-CG- CGUACACA-C -CGCCCGUCA C-UCU--CCC CU-------- ---------- 4321 ---------- ---------- ---------- ---------- ---------< -gucaaaau- 4381 gcgau-aaag auacuuaacc cgaacgcgcc gaca------ ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- ---------A GGGG-AGG-C AAGUCGUAAC AUGGUAAG-U GUA-CC(GGA 4621 -A)-GU-GC- ACUUGGACUA AAU------| ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- --------|| ||| // LOCUS mt.R.a.atr 5213 bp RNA RNA 08-JAN-1999 DEFINITION Rhodeus atremius atremius.; . ACCESSION AB0166 7 KEYWORDS . SOURCE Rhodeus atremius atremius. ORGANISM Rhodeus atremius atremius. REFERENCE 1 (bases 1 to 699) AUTHORS Okazaki,M. TITLE Phylogenetic relationships of Acheilognathinae (Cyprinidae) JOURNAL Published Only in DataBase (1999) In press STANDARD No information REFERENCE 2 (bases 1 to 699) AUTHORS Okazaki,M. TITLE Direct Submission JOURNAL Submitted (01-AUG-1998) to the DDBJ/EMBL/GenBank databases. Masahiro Okazaki, University of Tokyo, Depertment of Biological Sciences, Graduate School of Science; Hongo 7-3-1, Bunkyo-ku, Tokyo 113, Japan (E-mail: ss87193@Hongo.ecc.u-tokyo.ac.jp, Tel: 03-3812-2111) STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: AB016687 BASE COUNT 220 a 179 c 161 g 139 t 4514 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --~~~~~~~~ 661 (~~~~)~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~|~~~~ ~~~~~~~(~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~)~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~~~~ ~~~~~)~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~(~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~)~~~ 1381 ~~~~~|~~~~ ~~~~~~~~~~ ~|~~~~~~~~ ~~|~~~~~~~ (~~~~~~)~~ ~~~~~~~~~| 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|~~~~~~~( ~~~~~)~~~~ ~~~~~~~~~~ 1501 ~~~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~( ~~~~~~~~~~ ~~~~~~~~)~ ~~~~~~~~~| 1561 ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~|~~~~ 1921 ~~~~~~~~~~ ~~~~~~(~~~ ~~~~~~~~~C -GGU-UA)-U ACGAGA|--- -GGC-CCC-- 1981 AGUGG-AUAG U-------au caCGGC|GUA AAGGGUGGUC -A-agg---- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 ------g--- -cuuaaacuu gauaaa--gc -----|UAAA UGGCCC-CUC ----GGCC(G 2341 UCAUA)CGCU UC-------u AGGu-gcuaG AGA------- ---cccaa-c auAC(-GAAA 2401 -)GU|G---- ----gcuuua a-----uaaa ccccg----- ccu-gacuCC ACGAA-AGCU 2461 G-AGA---AA CAAACUGGG( AUUAGAUAC) CCCA-CUAU| -GCUC-AGC- CAUAAA-CCC 2521 A--GACA-UU |UA|------ ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- --a(guac)a a-auA-ACUG 2701 U-C|--C|GC C-AGGG-CAC UACGAGC(-- -ACCA--)GC UUA--AAACC CAAAGGAC-C 2761 UG|ACGGUG- CCUCAGA-CC CCCCUAGA|G GAGCCUGU-U |CUAAA--AC CG(AUAACCC 2821 U--------- ----)CGUUA A-ACCUCACC ACUUCUGGCC ---------- ---------- 2881 (-------au cc-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGC CUA-UA|UA- 3121 |CC|-GC--C |G------UC GC-CA|G-CU UAC-|CCU(G --UGA)AGG- -----(aua- 3181 u-a)------ a-aGUAAGCA AAA-UGGA-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ----caaac- 3781 ---------C CCAGAA-CGU C-AGGUCGAG G|UGUA|GCG CAU------- ---------G 3841 A-A-GU-GG- GA-AGA--AA -UGGGCUACA UU--UUCUU- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--a ug---)---- ---------- ---------- AAG-AAuac- 4021 ---------- -----UACGA --AUGUG-CA ACA(------ ---------- ---------- 4081 ---------- ---------- UGAAA----) C-AG-U--GC -C--UGAAG- -GAGGAUUUA 4141 G-U--AGUAA A-AGGGAA(- caaga-gu-- --)GUCCUUU U-GAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -CCC--GGCU 4261 CUGAGA-CG- CGUACACA-C -CGCCCGUCA C-UCU--CCC CU-------- ---------- 4321 ---------- ---------- ---------- ---------- ---------< -gucaaaau- 4381 gcaau-uaac auaccuaaua caaaagcacu gaua------ ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- ---------A GGGG-AGG-C AAGUCGUAAC AUGGUAAG-U GUA-CC(GGA 4621 -A)GGU-GC- ACUUGG---- ---------| ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- --------|| ||| // LOCUS mt.R.a.s.1 5213 bp RNA RNA 08-JAN-1999 DEFINITION Rhodeus atremius suigensis.; . ACCESSION AB0166 6 KEYWORDS . SOURCE Rhodeus atremius suigensis. ORGANISM Rhodeus atremius suigensis. REFERENCE 1 (bases 1 to 699) AUTHORS Okazaki,M. TITLE Phylogenetic relationships of Acheilognathinae (Cyprinidae) JOURNAL Published Only in DataBase (1999) In press STANDARD No information REFERENCE 2 (bases 1 to 699) AUTHORS Okazaki,M. TITLE Direct Submission JOURNAL Submitted (01-AUG-1998) to the DDBJ/EMBL/GenBank databases. Masahiro Okazaki, University of Tokyo, Depertment of Biological Sciences, Graduate School of Science; Hongo 7-3-1, Bunkyo-ku, Tokyo 113, Japan (E-mail: ss87193@Hongo.ecc.u-tokyo.ac.jp, Tel: 03-3812-2111) STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: AB016686 BASE COUNT 220 a 177 c 160 g 142 t 4514 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --~~~~~~~~ 661 (~~~~)~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~|~~~~ ~~~~~~~(~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~)~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~~~~ ~~~~~)~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~(~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~)~~~ 1381 ~~~~~|~~~~ ~~~~~~~~~~ ~|~~~~~~~~ ~~|~~~~~~~ (~~~~~~)~~ ~~~~~~~~~| 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|~~~~~~~( ~~~~~)~~~~ ~~~~~~~~~~ 1501 ~~~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~( ~~~~~~~~~~ ~~~~~~~~)~ ~~~~~~~~~| 1561 ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~|~~~~ 1921 ~~~~~~~~~~ ~~~~~~(~~~ ~~~~~~~~~C -GGU-UA)-U ACGAGA|--- -GGC-CCC-- 1981 AGUUG-AUAG U-------au caCGGC|GUA AAGGGUGGUC -A-agg---- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 ------g--- -cuuaaacuu aauaaa--gc -----|UAAA UGGCCC-CUC ----GGCC(G 2341 UCAUA)CGCU UC-------u AGGu-g-cuA GAG------- ---acccgac aUAC(-GAAA 2401 -)GU|A---- ----gcuuua a-----uaac ccccg----- ccu-gacuCC ACGAA-AGCU 2461 G-AGA---GA CAAACUGGG( AUUAGAUAC) CCCA-CUAU| -GCUC-AGC- CAUAAA-CCC 2521 A--GACA-UU |UA|------ ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- --a(auac)a a-auA-ACUG 2701 U-C|--C|GC C-AGGG-UAC UACGAGC(-- -ACUA--)GC UUA--AAACC CAAAGGAC-C 2761 UG|ACGGUG- CCUCAGA-CC CCCCUAGA|G GAGCCUGU-U |CUAGA--AC CG(AUAACCC 2821 U--------- ----)CGUUA A-ACCUCACC ACUUCUGGAC ---------- ---------- 2881 (-------au cc-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGC CUA-UA|UA- 3121 |CC|-GC--C |G------UC GC-CA|G-CU UAC-|CCU(G --UGA)AGG- -----(gua- 3181 u-a)------ a-aGUAAGCA AAA-UGGA-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ----cagac- 3781 ---------C CCAGAA-CGU C-AGGUCGAG G|UGUA|GCG CAU------- ---------G 3841 A-A-GU-GG- GA-AGA--AA -UGGGCUACA UU--UUCUU- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--a ua---)---- ---------- ---------- AAG-AAuac- 4021 ---------- -----UACGA --AUGUG-CA ACA(------ ---------- ---------- 4081 ---------- ---------- UGAAA----) C-AG-U--GC -C--UGAAG- -GAGGAUUUA 4141 G-U--AGUAA A-AAGGAA(- caaga-gu-- --)GUCCUUU U-GAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -CCC--GGCU 4261 CUGAGA-CG- CGUACACA-C -CGCCCGUCA C-UCU--CCC CU-------- ---------- 4321 ---------- ---------- ---------- ---------- ---------< -gucaaaau- 4381 gcaau-uaau auaccuaaua caaaagcacu gaca------ ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- ---------A GGGG-AGG-C AAGUCGUAAC AUGGUAAG-U GUA-CC(GGA 4621 -A)GGU-GC- ACUUGG---- ---------| ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- --------|| ||| // LOCUS mt.R.a.s.2 5213 bp RNA RNA 08-JAN-1999 DEFINITION Rhodeus atremius suigensis.; . ACCESSION AB0166 8 KEYWORDS . SOURCE Rhodeus atremius suigensis. ORGANISM Rhodeus atremius suigensis. REFERENCE 1 (bases 1 to 700) AUTHORS Okazaki,M. TITLE Phylogenetic relationships of Acheilognathinae (Cyprinidae) JOURNAL Published Only in DataBase (1999) In press STANDARD No information REFERENCE 2 (bases 1 to 700) AUTHORS Okazaki,M. TITLE Direct Submission JOURNAL Submitted (01-AUG-1998) to the DDBJ/EMBL/GenBank databases. Masahiro Okazaki, University of Tokyo, Depertment of Biological Sciences, Graduate School of Science; Hongo 7-3-1, Bunkyo-ku, Tokyo 113, Japan (E-mail: ss87193@Hongo.ecc.u-tokyo.ac.jp, Tel: 03-3812-2111) STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: AB016688 BASE COUNT 219 a 175 c 161 g 145 t 4513 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --~~~~~~~~ 661 (~~~~)~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~|~~~~ ~~~~~~~(~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~)~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~~~~ ~~~~~)~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~(~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~)~~~ 1381 ~~~~~|~~~~ ~~~~~~~~~~ ~|~~~~~~~~ ~~|~~~~~~~ (~~~~~~)~~ ~~~~~~~~~| 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|~~~~~~~( ~~~~~)~~~~ ~~~~~~~~~~ 1501 ~~~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~( ~~~~~~~~~~ ~~~~~~~~)~ ~~~~~~~~~| 1561 ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~|~~~~ 1921 ~~~~~~~~~~ ~~~~~~(~~~ ~~~~~~~~~C -GGU-UA)-U ACGAGA|--- -GGC-CCC-- 1981 AGUUG-AUAG U-------au caCGGC|GUA AAGGGUGGUC -A-agg---- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 ------g--- -cuuaaacuu aauaaa--gc -----|UAAA UGGCCC-CUC ----GGCC(G 2341 UCAUA)CGCU UC-------u AGGu-guuaG AGA------- ---cccaa-u aUAC(-GAAA 2401 -)GU|A---- ----gcuuua a-----uaac ccccg----- ccu-gacuCC ACGAA-AGCU 2461 G-AGA---AA CAAACUGGG( AUUAGAUAC) CCCA-CUAU| -GCUC-AGC- CAUAAA-CCC 2521 A--GACA-UU |UA|------ ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- --a(auac)a a-cuA-ACUG 2701 U-C|--C|GC C-AGGG-UAC UACGAGC(-- -AUUA--)GC UUA--AAACC CAAAGGAC-C 2761 UG|ACGGUG- CCUCAGA-CC GCCCUAGA|G GAGCCUGU-U |CUAGA--AC CG(AUAACCC 2821 U--------- ----)CGUUA A-ACCUGACC ACUUCUGGCC ---------- ---------- 2881 (-------gu cc-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGC CUA-UA|UA- 3121 |CC|-GC--C |G------UC GC-CA|G-CU UAC-|CCU(G --UGA)AGG- -----(aua- 3181 uaa)------ a-aGUAAGCA AAA-UGGA-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ----caaac- 3781 ---------C CCAGAA-CGU C-AGGUCGAG G|UGUA|GCG CAU------- ---------G 3841 A-A-GU-GG- GA-AGA--AA -UGGGCUACA UU--UUCUU- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--a ug---)---- ---------- ---------- AAG-AAcac- 4021 ---------- -----UACGA --AUGUG-CA ACA(------ ---------- ---------- 4081 ---------- ---------- UGAAA----) C-AG-U--GC -C--UGAAG- -GAGGAUUUA 4141 G-U--AGUAA A-AAGGAA(- caaga-gu-- --)GUCCUUU U-GAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -CCC--GGCU 4261 CUGAGA-CG- CGUACACA-C -CGCCCGUCA C-UCU--CCC CU-------- ---------- 4321 ---------- ---------- ---------- ---------- ---------< -gucaaaau- 4381 gcaau-uauu auaccuaaug caaaagcacu gaca------ ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- ---------A GGGG-AGG-C AAGUCGUAAC AUGGUAAG-U GUA-CC(GGA 4621 -A)GGU-GC- ACUUGG---- ---------| ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- --------|| ||| // LOCUS mt.R.a.s.3 5213 bp RNA RNA 08-JAN-1999 DEFINITION Rhodeus atremius suigensis.; . ACCESSION AB0166 9 KEYWORDS . SOURCE Rhodeus atremius suigensis. ORGANISM Rhodeus atremius suigensis. REFERENCE 1 (bases 1 to 699) AUTHORS Okazaki,M. TITLE Phylogenetic relationships of Acheilognathinae (Cyprinidae) JOURNAL Published Only in DataBase (1999) In press STANDARD No information REFERENCE 2 (bases 1 to 699) AUTHORS Okazaki,M. TITLE Direct Submission JOURNAL Submitted (01-AUG-1998) to the DDBJ/EMBL/GenBank databases. Masahiro Okazaki, University of Tokyo, Depertment of Biological Sciences, Graduate School of Science; Hongo 7-3-1, Bunkyo-ku, Tokyo 113, Japan (E-mail: ss87193@Hongo.ecc.u-tokyo.ac.jp, Tel: 03-3812-2111) STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: AB016689 BASE COUNT 219 a 179 c 161 g 140 t 4514 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --~~~~~~~~ 661 (~~~~)~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~|~~~~ ~~~~~~~(~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~)~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~~~~ ~~~~~)~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~(~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~)~~~ 1381 ~~~~~|~~~~ ~~~~~~~~~~ ~|~~~~~~~~ ~~|~~~~~~~ (~~~~~~)~~ ~~~~~~~~~| 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|~~~~~~~( ~~~~~)~~~~ ~~~~~~~~~~ 1501 ~~~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~( ~~~~~~~~~~ ~~~~~~~~)~ ~~~~~~~~~| 1561 ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~|~~~~ 1921 ~~~~~~~~~~ ~~~~~~(~~~ ~~~~~~~~~C -GGU-UA)-U ACGAGA|--- -GGC-CCC-- 1981 AGUGG-AUAG U-------au caCGGC|GUA AAGGGUGGUC -A-agg---- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 ------g--- -cuuaaacuu gauaaa--gc -----|UAAA UGGCCC-CUC ----GGCC(G 2341 UCAUA)CGCU UC-------u AGGu-gcuaG AGA------- ---cccaa-c auAC(-GAAA 2401 -)GU|G---- ----gcuuua a-----uaaa ccccg----- ccu-gacuCC ACGAA-AGCU 2461 G-AGA---AA CAAACUGGG( AUUAGAUAC) CCCA-CUAU| -GCUC-AGC- CAUAAA-CCC 2521 A--GACA-UU |UA|------ ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- --a(guac)a a-auA-ACUG 2701 U-C|--C|GC C-AGGG-CAC UACGAGC(-- -ACCA--)GC UUA--AAACC CAAAGGAC-C 2761 UG|ACGGUG- CCUCAGA-CC CCCCUAGA|G GAGCCUGU-U |CUAAA--AC CG(AUAACCC 2821 U--------- ----)CGUUA A-ACCUCACC ACUUCUGGCC ---------- ---------- 2881 (-------au cc-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGC CUA-UA|UA- 3121 |CC|-GC--C |G------UC GC-CA|G-CU UAC-|CCU(G --UGA)AGG- -----(gua- 3181 u-a)------ a-aGUAAGCA AAA-UGGA-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ----cagac- 3781 ---------C CCAGAA-CGU C-AGGUCGAG G|UGUA|GCG CAU------- ---------G 3841 A-A-GU-GG- GA-AGA--AA -UGGGCUACA UU--UUCUU- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--a ua---)---- ---------- ---------- AAG-AAuac- 4021 ---------- -----UACGA --AUGUG-CA ACA(------ ---------- ---------- 4081 ---------- ---------- UGAAA----) C-AG-U--GC -C--UGAAG- -GAGGAUUUA 4141 G-U--AGUAA A-AAGGAA(- caaga-gu-- --)GUCCUUU U-GAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -CCC--GGCU 4261 CUGAGA-CG- CGUACACA-C -CGCCCGUCA C-UCU--CCC CU-------- ---------- 4321 ---------- ---------- ---------- ---------- ---------< -gucaaaau- 4381 gcaau-uaau auaccuaaua caaaagcacu gaca------ ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- ---------A GGGG-AGG-C AAGUCGUAAC AUGGUAAG-U GUA-CC(GGA 4621 -A)GGU-GC- UCUUGG---- ---------| ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- --------|| ||| // LOCUS mt.R.fan.1 5213 bp RNA RNA 08-JAN-1999 DEFINITION Rhodeus fangi.; . ACCESSION AB0166 0 KEYWORDS . SOURCE Rhodeus fangi. ORGANISM Rhodeus fangi. REFERENCE 1 (bases 1 to 700) AUTHORS Okazaki,M. TITLE Phylogenetic relationships of Acheilognathinae (Cyprinidae) JOURNAL Published Only in DataBase (1999) In press STANDARD No information REFERENCE 2 (bases 1 to 700) AUTHORS Okazaki,M. TITLE Direct Submission JOURNAL Submitted (01-AUG-1998) to the DDBJ/EMBL/GenBank databases. Masahiro Okazaki, University of Tokyo, Depertment of Biological Sciences, Graduate School of Science; Hongo 7-3-1, Bunkyo-ku, Tokyo 113, Japan (E-mail: ss87193@Hongo.ecc.u-tokyo.ac.jp, Tel: 03-3812-2111) STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: AB016690 BASE COUNT 218 a 177 c 160 g 145 t 4513 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --~~~~~~~~ 661 (~~~~)~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~|~~~~ ~~~~~~~(~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~)~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~~~~ ~~~~~)~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~(~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~)~~~ 1381 ~~~~~|~~~~ ~~~~~~~~~~ ~|~~~~~~~~ ~~|~~~~~~~ (~~~~~~)~~ ~~~~~~~~~| 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|~~~~~~~( ~~~~~)~~~~ ~~~~~~~~~~ 1501 ~~~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~( ~~~~~~~~~~ ~~~~~~~~)~ ~~~~~~~~~| 1561 ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~|~~~~ 1921 ~~~~~~~~~~ ~~~~~~(~~~ ~~~~~~~~~C -GGU-UA)-U ACGAGA|--- -GGC-CCC-- 1981 AGUUG-AUAG U-------au caCGGC|GUA AAGGGUGGUC -A-agg---- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 ------g--- -cuuaaacuu aauaaa--gc -----|UAAA UGGCCC-CUC ----GGCC(G 2341 UCAUA)CGCU UC-------u AGGu-g-cuA GAG------- ---acccgau aUAC(-GAAA 2401 -)GU|A---- ----gcuuua a-----uaac ccccg----- ccu-gacuCC ACGAA-AGCU 2461 G-AGA---AA CAAACUGGG( AUUAGAUAC) CCCA-CUAU| -GCUC-AGC- CAUAAA-CCC 2521 A--GACA-UU |UA|------ ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- --a(auac)a a-cuA-ACUG 2701 U-C|--C|GC C-AGGG-UAC UACGAGC(-- -AUUA--)GC UUA--AAACC CAAAGGAC-C 2761 UG|ACGGUG- CCUCAGA-UC CCCCUAGA|G GAGCCUGU-U |CUAGA--AC CG(AUAACCC 2821 U--------- ----)CGUUA A-ACCUCACC ACUUCUGGCC ---------- ---------- 2881 (-------gu cc-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGC CUA-UA|UA- 3121 |CC|-GC--C |G------UC GC-CA|G-CU UAC-|CCU(G --UGA)AGG- -----(aua- 3181 uaa)------ a-aGUAAGCA AAA-UGGA-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ----caaac- 3781 ---------C CCAGAA-CGU C-AGGUCGAG G|UGUA|GCG CAU------- ---------G 3841 A-A-GU-GG- GA-AGA--AA -UGGGCUACA UU--UUCUU- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--a ug---)---- ---------- ---------- AAG-AAcac- 4021 ---------- -----UACGA --AUGUG-CA ACA(------ ---------- ---------- 4081 ---------- ---------- UGAAA----) C-AG-U--GC -C--UGAAG- -GAGGAUUUA 4141 G-U--AGUAA A-AAGGAA(- caaga-gu-- --)GUCCUUU U-GAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -CCC--GGCU 4261 CUGAGA-CG- CGUACACA-C -CGCCCGUCA C-UCU--CCC CU-------- ---------- 4321 ---------- ---------- ---------- ---------- ---------< -gucaaaau- 4381 gcaau-uauu auaccuaaug caaaagcacu gaca------ ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- ---------A GGGG-AGG-C AAGUCGUAAC AUGGUAAG-U GUA-CC(GGA 4621 -A)GGU-GC- ACUUGG---- ---------| ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- --------|| ||| // LOCUS mt.R.fan.2 5213 bp RNA RNA 08-JAN-1999 DEFINITION Rhodeus fangi.; . ACCESSION AB0166 1 KEYWORDS . SOURCE Rhodeus fangi. ORGANISM Rhodeus fangi. REFERENCE 1 (bases 1 to 700) AUTHORS Okazaki,M. TITLE Phylogenetic relationships of Acheilognathinae (Cyprinidae) JOURNAL Published Only in DataBase (1999) In press STANDARD No information REFERENCE 2 (bases 1 to 700) AUTHORS Okazaki,M. TITLE Direct Submission JOURNAL Submitted (01-AUG-1998) to the DDBJ/EMBL/GenBank databases. Masahiro Okazaki, University of Tokyo, Depertment of Biological Sciences, Graduate School of Science; Hongo 7-3-1, Bunkyo-ku, Tokyo 113, Japan (E-mail: ss87193@Hongo.ecc.u-tokyo.ac.jp, Tel: 03-3812-2111) STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: AB016691 BASE COUNT 218 a 178 c 160 g 144 t 4513 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --~~~~~~~~ 661 (~~~~)~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~|~~~~ ~~~~~~~(~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~)~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~~~~ ~~~~~)~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~(~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~)~~~ 1381 ~~~~~|~~~~ ~~~~~~~~~~ ~|~~~~~~~~ ~~|~~~~~~~ (~~~~~~)~~ ~~~~~~~~~| 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|~~~~~~~( ~~~~~)~~~~ ~~~~~~~~~~ 1501 ~~~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~( ~~~~~~~~~~ ~~~~~~~~)~ ~~~~~~~~~| 1561 ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~|~~~~ 1921 ~~~~~~~~~~ ~~~~~~(~~~ ~~~~~~~~~C -GGU-UA)-U ACGAGA|--- -GGC-CCC-- 1981 AGUUG-AUAG U-------au caCGGC|GUA AAGGGUGGUC -A-agg---- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 ------g--- -cuuaaacuu aauaaa--gc -----|UAAA UGGCCC-CUC ----GGCC(G 2341 UCAUA)CGCU UC-------u AGGu-g-cuA GAG------- ---acccgau aUAC(-GAAA 2401 -)GU|A---- ----gcuuua a-----uaac ccccg----- ccu-gacuCC ACGAA-AGCU 2461 G-AGA---AA CAAACUGGG( AUUAGAUAC) CCCA-CUAU| -GCUC-AGC- CAUAAA-CCC 2521 A--GACA-UU |UA|------ ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- --a(auac)a a-cuA-ACUG 2701 U-C|--C|GC C-AGGG-UAC UACGAGC(-- -AUUA--)GC UUA--AAACC CAAAGGAC-C 2761 UG|ACGGUG- CCUCAGA-CC CCCCUAGA|G GAGCCUGU-U |CUAGA--AC CG(AUAACCC 2821 U--------- ----)CGUUA A-ACCUCACC ACUUCUGGCC ---------- ---------- 2881 (-------gu cc-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGC CUA-UA|UA- 3121 |CC|-GC--C |G------UC GC-CA|G-CU UAC-|CCU(G --UGA)AGG- -----(aua- 3181 uaa)------ a-aGUAAGCA AAA-UGGA-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ----caaac- 3781 ---------C CCAGAA-CGU C-AGGUCGAG G|UGUA|GCG CAU------- ---------G 3841 A-A-GU-GG- GA-AGA--AA -UGGGCUACA UU--UUCUU- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--a ug---)---- ---------- ---------- AAG-AAcac- 4021 ---------- -----UACGA --AUGUG-CA ACA(------ ---------- ---------- 4081 ---------- ---------- UGAAA----) C-AG-U--GC -C--UGAAG- -GAGGAUUUA 4141 G-U--AGUAA A-AAGGAA(- caaga-gu-- --)GUCCUUU U-GAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -CCC--GGCU 4261 CUGAGA-CG- CGUACACA-C -CGCCCGUCA C-UCU--CCC CU-------- ---------- 4321 ---------- ---------- ---------- ---------- ---------< -gucaaaau- 4381 cgaau-uauu auaccuaaug caaaagcacu gaca------ ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- ---------A GGGG-AGG-C AAGUCGUAAC AUGGUAAG-U GUA-CC(GGA 4621 -A)GGU-GC- ACUUGG---- ---------| ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- --------|| ||| // LOCUS mt.R.lig.1 5213 bp RNA RNA 08-JAN-1999 DEFINITION Rhodeus lighti.; . ACCESSION AB0166 2 KEYWORDS . SOURCE Rhodeus lighti. ORGANISM Rhodeus lighti. REFERENCE 1 (bases 1 to 698) AUTHORS Okazaki,M. TITLE Phylogenetic relationships of Acheilognathinae (Cyprinidae) JOURNAL Published Only in DataBase (1999) In press STANDARD No information REFERENCE 2 (bases 1 to 698) AUTHORS Okazaki,M. TITLE Direct Submission JOURNAL Submitted (01-AUG-1998) to the DDBJ/EMBL/GenBank databases. Masahiro Okazaki, University of Tokyo, Depertment of Biological Sciences, Graduate School of Science; Hongo 7-3-1, Bunkyo-ku, Tokyo 113, Japan (E-mail: ss87193@Hongo.ecc.u-tokyo.ac.jp, Tel: 03-3812-2111) STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: AB016692 BASE COUNT 216 a 176 c 168 g 138 t 4515 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --~~~~~~~~ 661 (~~~~)~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~|~~~~ ~~~~~~~(~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~)~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~~~~ ~~~~~)~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~(~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~)~~~ 1381 ~~~~~|~~~~ ~~~~~~~~~~ ~|~~~~~~~~ ~~|~~~~~~~ (~~~~~~)~~ ~~~~~~~~~| 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|~~~~~~~( ~~~~~)~~~~ ~~~~~~~~~~ 1501 ~~~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~( ~~~~~~~~~~ ~~~~~~~~)~ ~~~~~~~~~| 1561 ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~|~~~~ 1921 ~~~~~~~~~~ ~~~~~~(~~~ ~~~~~~~~~C -GGU-UA)-U ACGAGA|--- -GGC-CCC-- 1981 AGUUG-ACGG U-------gg uaCGGC|GUA AAGGGUGGUU -A-agg---- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 ------a--- -caacaa-uu aauaaa--gc -----|UGAA UAGCCC-CCC ----AGCC(G 2341 UCAUA)CGCU UC-------u GGGc-gcuaG AAA------- ---cccaa-c auGC(-GAAA 2401 -)gu|g---- ----gcuuua ------auag ccucg----- ccu-gaacCC ACGAA-AGCU 2461 G-AGA---AA CAAACUGGG( AUUAGAUAC) CCCA-CUAU| -GCUC-AGC- UGUAAA-CCU 2521 A--GACA-UU |UA|------ ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- --a(auac)a g-ccA-CAUG 2701 U-C|--c-GC C-aGGG-UAC UACGAGC(-- -AUUA--)GC UUA--AAACC CAAAUGGA-C 2761 UG|ACGGUG- CCUCAGA-CC CCCCUAGA|G GAGCCUGU-U |CUAGA--AC CG(AUAAUCC 2821 C--------- ----)CGUUA A-ACCUCACC ACUUCUGGCC ---------- ---------- 2881 (-------au cc-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGC CUA-UA|UA- 3121 |CC|-GC--C |G------UC GC-CA|G-CU UAC-|CCU(G --UGA)AGG- -----(uaa- 3181 uaa)------ g-aGUAAGCA AAA-UGGA-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ----caaaa- 3781 ---------U CCAAAA-CGU C-AGGUCGAG G|UGUA|GCG CAC------- ---------G 3841 G-A-GU-GG- GA-AGA--AA -UGGGCUACA UU--UUCUU- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--a ag---)---- ---------- ---------- CAG-AAuac- 4021 ---------- -----UACGG --ACGCG-CA ACA(------ ---------- ---------- 4081 ---------- ---------- UGAAA----) U-AG-U--GC -C--UGAAG- -GAGGAUUUA 4141 G-U--AGUAA A-AAGGAA(- aaaga-gu-- --)GUCCUUU U-GAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -CCC--GGCU 4261 CUGAGA-CG- CGUACACA-C -CGCCCGUCA C-UCU--CCC CU-------- ---------- 4321 ---------- ---------- ---------- ---------- ---------< -gucgaaau- 4381 gcaau-auag auaacuaaug ccaacgcacu gaca------ ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- ---------A GGGG-AGG-C AAGUCGUAAC AUGGUAAG-U GUA-CC(GGA 4621 -A)GGU-GC- ACUUGG---- ---------| ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- --------|| ||| // LOCUS mt.R.lig.2 5213 bp RNA RNA 08-JAN-1999 DEFINITION Rhodeus lighti.; . ACCESSION AB0166 3 KEYWORDS . SOURCE Rhodeus lighti. ORGANISM Rhodeus lighti. REFERENCE 1 (bases 1 to 699) AUTHORS Okazaki,M. TITLE Phylogenetic relationships of Acheilognathinae (Cyprinidae) JOURNAL Published Only in DataBase (1999) In press STANDARD No information REFERENCE 2 (bases 1 to 699) AUTHORS Okazaki,M. TITLE Direct Submission JOURNAL Submitted (01-AUG-1998) to the DDBJ/EMBL/GenBank databases. Masahiro Okazaki, University of Tokyo, Depertment of Biological Sciences, Graduate School of Science; Hongo 7-3-1, Bunkyo-ku, Tokyo 113, Japan (E-mail: ss87193@Hongo.ecc.u-tokyo.ac.jp, Tel: 03-3812-2111) STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: AB016693 BASE COUNT 226 a 179 c 160 g 134 t 4514 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --~~~~~~~~ 661 (~~~~)~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~|~~~~ ~~~~~~~(~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~)~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~~~~ ~~~~~)~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~(~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~)~~~ 1381 ~~~~~|~~~~ ~~~~~~~~~~ ~|~~~~~~~~ ~~|~~~~~~~ (~~~~~~)~~ ~~~~~~~~~| 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|~~~~~~~( ~~~~~)~~~~ ~~~~~~~~~~ 1501 ~~~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~( ~~~~~~~~~~ ~~~~~~~~)~ ~~~~~~~~~| 1561 ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~|~~~~ 1921 ~~~~~~~~~~ ~~~~~~(~~~ ~~~~~~~~~C -GGU-UA)-U ACGAGA|--- -GGC-CCC-- 1981 AGUUG-AUAG U-------gc caCGGC|GUA AAGGGUGGUU -A-agg---- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 ------a--- -aaauaacua aauaaa--gc -----|UGAU CAGCCC-CUC ----GGCC(G 2341 UCAUA)CGCU UC-------u AGGu-gcuaG AAA------- ---accaa-a gUAC(-GAAA 2401 -)GU|A---- ----gcuuua a-----uaac cccca----- ccu-gaacCC ACGAA-AGCU 2461 G-AGA---AA CAAACUGGG( AUUAGAUAC) CCCA-CUAU| -GCUC-AAC- UGUAAA-CCC 2521 A--GACA-UU |CA|------ ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- --g(auac)a g-ccA-CAUG 2701 U-C|--C|GC C-AGGG-UAC UACAAGC(-- -AUUA--)GC UUA--AAACC CAAAGGAC-U 2761 UG|ACGGUG- CCUCAGA-CC CCCCUAGA|G GAGCCUGU-U |CUAGA--AC CG(AUAAUCC 2821 C--------- ----)CGUUA A-ACCUCACC ACCUCUGGCC ---------- ---------- 2881 (-------au cc-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGC CUA-UA|UA- 3121 |CC|-GC--C |G------UC GC-CA|G-CU UAC-|CCU(G --UGA)AGG- -----(aaa- 3181 ua-)------ u-aGUAAGCA AAA-UGGA-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ----caaaa- 3781 ---------C CCAGAA-CGU C-AGGUCGAG G|UGUA|GCG CAC------- ---------G 3841 A-G-GU-GG- GA-AGA--AA -UGGGCUACA UU--UUCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--a ac---)---- ---------- ---------- CAG-AAuac- 4021 ---------- -----UACGG --ACGCG-CA ACA(------ ---------- ---------- 4081 ---------- ---------- UGAAA----) U-AG-U--GC -C--UGAAG- -GAGGAUUUA 4141 G-U--AGUAA A-AAGGAA(- agaga-gu-- --)GUCCUUU U-GAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -CCC--GGCU 4261 CUGAGA-CG- CGUACACA-C -CGCCCGUCA C-UCU--CCC CU-------- ---------- 4321 ---------- ---------- ---------- ---------- ---------< -gucaaaau- 4381 gcaac-aaaa auauuuaauc caagagcacu gaca------ ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- ---------A GGGG-AGG-C AAGUCGUAAC AUGGUAAG-U GUA-CC(GGA 4621 -A)GGU-GC- ACUUGG---- ---------| ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- --------|| ||| // LOCUS mt.R.lig.3 5213 bp RNA RNA 08-JAN-1999 DEFINITION Rhodeus lighti.; . ACCESSION AB0166 4 KEYWORDS . SOURCE Rhodeus lighti. ORGANISM Rhodeus lighti. REFERENCE 1 (bases 1 to 698) AUTHORS Okazaki,M. TITLE Phylogenetic relationships of Acheilognathinae (Cyprinidae) JOURNAL Published Only in DataBase (1999) In press STANDARD No information REFERENCE 2 (bases 1 to 698) AUTHORS Okazaki,M. TITLE Direct Submission JOURNAL Submitted (01-AUG-1998) to the DDBJ/EMBL/GenBank databases. Masahiro Okazaki, University of Tokyo, Depertment of Biological Sciences, Graduate School of Science; Hongo 7-3-1, Bunkyo-ku, Tokyo 113, Japan (E-mail: ss87193@Hongo.ecc.u-tokyo.ac.jp, Tel: 03-3812-2111) STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: AB016694 BASE COUNT 215 a 177 c 169 g 137 t 4515 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --~~~~~~~~ 661 (~~~~)~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~|~~~~ ~~~~~~~(~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~)~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~~~~ ~~~~~)~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~(~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~)~~~ 1381 ~~~~~|~~~~ ~~~~~~~~~~ ~|~~~~~~~~ ~~|~~~~~~~ (~~~~~~)~~ ~~~~~~~~~| 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|~~~~~~~( ~~~~~)~~~~ ~~~~~~~~~~ 1501 ~~~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~( ~~~~~~~~~~ ~~~~~~~~)~ ~~~~~~~~~| 1561 ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~|~~~~ 1921 ~~~~~~~~~~ ~~~~~~(~~~ ~~~~~~~~~C -GGU-UA)-U ACGAGG|--- -GGC-CCC-- 1981 AGUUG-ACAG U-------ag uaCGGC|GUA AAGGGUGGUU -A-ggg---- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 ------a--- -caacaa-uu aauaaa--gc -----|UGAA UAGCCC-CCC ----GGCC(G 2341 UCAUA)CGCU UC-------u GGGc-gcugG AAA------- ---cccaac- auGC(-GAAA 2401 -)GU|A---- ----gcuuua ------auag ccuca----- ccu-gaacCC ACGAA-AGCU 2461 G-AGA---AA CAAACUGGG( AUUAGAUAC) CCCA-CUAU| -GCUC-AGC- UGUAAA-CCU 2521 A--GACA-UU |UA|------ ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- --a(auac)a g-ccA-CAUG 2701 U-C|--c-GC C-aGGG-UAC UACGAGC(-- -AUUA--)GC UUA--AAACC CAAAGGAC-C 2761 UG|ACGGUG- CCUCAGA-CC CCCCUAGA|G GAGCCUGU-U |CUAGA--AC CG(AUAAUCC 2821 C--------- ----)CGUUA A-ACCUCACC ACUUCUGGCC ---------- ---------- 2881 (-------au cc-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGC CUA-UA|UA- 3121 |CC|-GC--C |G------UC GC-CA|G-CU UAC-|CCU(G --UGA)AGG- -----(uaa- 3181 uaa)------ g-aGUAAGCA AAA-UGGA-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ----caaaa- 3781 ---------U CCAAAA-CGU C-AGGUCGAG G|UGUA|GCG CAC------- ---------G 3841 G-A-GU-GG- GA-AGA--AA -UGGGCUACA UU--UUCUU- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--a ag---)---- ---------- ---------- CAG-AAuac- 4021 ---------- -----UACGG --ACGCG-CA ACA(------ ---------- ---------- 4081 ---------- ---------- UGAAA----) U-AG-U--GC -C--UGAAG- -GAGGAUUUA 4141 G-U--AGUAA A-AAGGAA(- gaaga-gu-- --)GUCCUUU U-GAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -CCC--GGCU 4261 CUGAGA-CG- CGUACACA-C -CGCCCGUCA C-UCU--CCC CU-------- ---------- 4321 ---------- ---------- ---------- ---------- ---------< -gucgaaau- 4381 gcaau-auag auaacuaaug ccaacgcacu gaca------ ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- ---------A GGGG-AGG-C AAGUCGUAAC AUGGUAAG-U GUA-CC(GGA 4621 -A)GGU-GC- ACUUGG---- ---------| ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- --------|| ||| // LOCUS mt.R.notat 5213 bp RNA RNA 08-JAN-1999 DEFINITION Rhodeus notatus.; . ACCESSION AB0166 5 KEYWORDS . SOURCE Rhodeus notatus. ORGANISM Rhodeus notatus. REFERENCE 1 (bases 1 to 700) AUTHORS Okazaki,M. TITLE Phylogenetic relationships of Acheilognathinae (Cyprinidae) JOURNAL Published Only in DataBase (1999) In press STANDARD No information REFERENCE 2 (bases 1 to 700) AUTHORS Okazaki,M. TITLE Direct Submission JOURNAL Submitted (01-AUG-1998) to the DDBJ/EMBL/GenBank databases. Masahiro Okazaki, University of Tokyo, Depertment of Biological Sciences, Graduate School of Science; Hongo 7-3-1, Bunkyo-ku, Tokyo 113, Japan (E-mail: ss87193@Hongo.ecc.u-tokyo.ac.jp, Tel: 03-3812-2111) STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: AB016695 BASE COUNT 219 a 177 c 160 g 144 t 4513 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --~~~~~~~~ 661 (~~~~)~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~|~~~~ ~~~~~~~(~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~)~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~~~~ ~~~~~)~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~(~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~)~~~ 1381 ~~~~~|~~~~ ~~~~~~~~~~ ~|~~~~~~~~ ~~|~~~~~~~ (~~~~~~)~~ ~~~~~~~~~| 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|~~~~~~~( ~~~~~)~~~~ ~~~~~~~~~~ 1501 ~~~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~( ~~~~~~~~~~ ~~~~~~~~)~ ~~~~~~~~~| 1561 ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~|~~~~ 1921 ~~~~~~~~~~ ~~~~~~(~~~ ~~~~~~~~~C -GGU-UA)-U ACGAGA|--- -GGC-CCC-- 1981 AGUUG-AUAG U-------au caCGGC|GUA AAGGGUGGUC -A-agg---- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 ------g--- -cuuaaacuu aauaaa--gc -----|UAAA UGGCCC-CUC ----GGCC(G 2341 UCAUA)CGCU UC-------u AGGu-gcuaG AGA------- ---cccaa-u aUAC(-GAAA 2401 -)GU|A---- ----gcuuua a-----uaac ccccg----- ccu-gacuCC ACGAA-AGCU 2461 G-AGA---AA CAAACUGGG( AUUAGAUAC) CCCA-CUAU| -GCUC-AGC- CAUAAA-CCC 2521 A--GACA-UU |UA|------ ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- --a(auac)a a-cuA-ACUG 2701 U-C|--C|GC C-AGGG-UAC UACGAGC(-- -AUUA--)GC UUA--AAACC CAAAGGAC-C 2761 UG|ACGGUG- CCUCAGA-CC CCCCUAGA|G GAGCCUGU-U |CUAGA--AC CG(AUAACCC 2821 U--------- ----)CGUUA A-ACCUCACC ACUUCUGGCC ---------- ---------- 2881 (-------gu cc-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGC CUA-UA|UA- 3121 |CC|-GC--C |G------UC GC-CA|G-CU UAC-|CCU(G --UGA)AGG- -----(aua- 3181 uaa)------ a-aGUAAGCA AAA-UGGA-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ----caaac- 3781 ---------C CCAGAA-CGU C-AGGUCGAG G|UGUA|GCG CAU------- ---------G 3841 A-A-GU-GG- GA-AGA--AA -UGGGCUACA UU--UUCUU- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--a ug---)---- ---------- ---------- AAG-AAcac- 4021 ---------- -----UACGA --AUGUG-CA ACA(------ ---------- ---------- 4081 ---------- ---------- UGAAA----) C-AG-U--GC -C--UGAAG- -GAGGAUUUA 4141 G-U--AGUAA A-AAGGAA(- caaga-gu-- --)GUCCUUU U-GAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -CCC--GGCU 4261 CUGAGA-CG- CGUACACA-C -CGCCGUGCA C-UCU--CCC CU-------- ---------- 4321 ---------- ---------- ---------- ---------- ---------< -gucaaaau- 4381 gcaau-uauu auaccuaaug caaaagcacu gaca------ ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- ---------A GGGG-AGG-C AAGUCGUAAC AUGGUAAG-U GUA-CC(GGA 4621 -A)GGU-GC- ACUUGG---- ---------| ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- --------|| ||| // LOCUS mt.R.oce.k 5213 bp RNA RNA 08-JAN-1999 DEFINITION Rhodeus ocellatus kurumeus.; . ACCESSION AB0166 6 KEYWORDS . SOURCE Rhodeus ocellatus kurumeus. ORGANISM Rhodeus ocellatus kurumeus. REFERENCE 1 (bases 1 to 700) AUTHORS Okazaki,M. TITLE Phylogenetic relationships of Acheilognathinae (Cyprinidae) JOURNAL Published Only in DataBase (1999) In press STANDARD No information REFERENCE 2 (bases 1 to 700) AUTHORS Okazaki,M. TITLE Direct Submission JOURNAL Submitted (01-AUG-1998) to the DDBJ/EMBL/GenBank databases. Masahiro Okazaki, University of Tokyo, Depertment of Biological Sciences, Graduate School of Science; Hongo 7-3-1, Bunkyo-ku, Tokyo 113, Japan (E-mail: ss87193@Hongo.ecc.u-tokyo.ac.jp, Tel: 03-3812-2111) STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: AB016696 BASE COUNT 218 a 177 c 160 g 145 t 4513 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --~~~~~~~~ 661 (~~~~)~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~|~~~~ ~~~~~~~(~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~)~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~~~~ ~~~~~)~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~(~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~)~~~ 1381 ~~~~~|~~~~ ~~~~~~~~~~ ~|~~~~~~~~ ~~|~~~~~~~ (~~~~~~)~~ ~~~~~~~~~| 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|~~~~~~~( ~~~~~)~~~~ ~~~~~~~~~~ 1501 ~~~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~( ~~~~~~~~~~ ~~~~~~~~)~ ~~~~~~~~~| 1561 ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~|~~~~ 1921 ~~~~~~~~~~ ~~~~~~(~~~ ~~~~~~~~~C -GGU-UA)-U ACGAGA|--- -GGC-CCU-- 1981 AGUUG-AUGA U-------au ugCGGC|GUA AAGGGUGGUU -A-agg---- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 ------g--- -cugcaaccu aauaaa--gc -----|UGAA UAGCCC-UCC ----GGCC(G 2341 UCAUA)CGCU UC-------c AGGc-gcuaG AAA------- ---cccaauc aAAC(-GAAA 2401 -)GU|A---- ----gcuuua a-----ugaa auuca----- ccu-gaccCC ACGAA-AGCU 2461 A-AGA---UA CAAACUGGG( AUUAGAUAC) CCCA-CUAU| -GCUU-AGC- CUUAAA-CCC 2521 A--GACA-UU |UA|------ ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- --a(auac)a a--cA-CAUG 2701 U-C|--c-GC C-AGGG-UAC UACGAGC(-- -AUUA--)GC UUA--AAACC CAAGGGAC-C 2761 UG|ACGGUG- CCUCAGA-CC CCCCUAGA|G GAGCCUGU-U |CUAGA--AC CG(AUAACCC 2821 C--------- ----)CGUUA A-ACCUCACC ACUUCUAGUC ---------- ---------- 2881 (-------ac cc-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGC CUA-UA|UA- 3121 |CC|-GC--C |G------UC GC-CA|G-CU UAC-|CCU(G --UGA)AGG- -----(ca-- 3181 uaa)------ a-aGUAAGCA AAA-UGGG-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ----cauaa- 3781 ---------C CCAGAA-CGU C-AGGUCGAG G|UGUA|GCG CAC------- ---------G 3841 A-A-GU-GG- GA-AGA--AA -UGGGCUACA UU--UUCUG- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--c ca---)---- ---------- ---------- CAG-AAcac- 4021 ---------- -----UACGA --AUACG-CA ACA(------ ---------- ---------- 4081 ---------- ---------- UGAAA----) U-AG-U--GC -U--UGAAG- -GAGGAUUUA 4141 G-U--AGUAA A-AAGGAA(- agaga-gu-- --)GUCCUUU U-GAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -UCC--GGCU 4261 CUGAGA-CG- CGUACACA-C -CGCCCGUCA C-UCU--CCC CU-------- ---------- 4321 ---------- ---------- ---------- ---------- ---------< -gucaaaau- 4381 gcaauuaaau auuccuaaug cuagagcacu gaca------ ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- ---------A GGGG-AGG-C AAGUCGUAAC AUGGUAAG-U GUA-CC(GGA 4621 -A)GGU-GU- ACUUGG---- ---------| ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- --------|| ||| // LOCUS mt.R.o.o.1 5213 bp RNA RNA 08-JAN-1999 DEFINITION Rhodeus ocellatus ocellatus.; . ACCESSION AB0166 7 KEYWORDS . SOURCE Rhodeus ocellatus ocellatus. ORGANISM Rhodeus ocellatus ocellatus. REFERENCE 1 (bases 1 to 701) AUTHORS Okazaki,M. TITLE Phylogenetic relationships of Acheilognathinae (Cyprinidae) JOURNAL Published Only in DataBase (1999) In press STANDARD No information REFERENCE 2 (bases 1 to 701) AUTHORS Okazaki,M. TITLE Direct Submission JOURNAL Submitted (01-AUG-1998) to the DDBJ/EMBL/GenBank databases. Masahiro Okazaki, University of Tokyo, Depertment of Biological Sciences, Graduate School of Science; Hongo 7-3-1, Bunkyo-ku, Tokyo 113, Japan (E-mail: ss87193@Hongo.ecc.u-tokyo.ac.jp, Tel: 03-3812-2111) STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: AB016697 BASE COUNT 218 a 175 c 162 g 146 t 4512 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --~~~~~~~~ 661 (~~~~)~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~|~~~~ ~~~~~~~(~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~)~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~~~~ ~~~~~)~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~(~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~)~~~ 1381 ~~~~~|~~~~ ~~~~~~~~~~ ~|~~~~~~~~ ~~|~~~~~~~ (~~~~~~)~~ ~~~~~~~~~| 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|~~~~~~~( ~~~~~)~~~~ ~~~~~~~~~~ 1501 ~~~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~( ~~~~~~~~~~ ~~~~~~~~)~ ~~~~~~~~~| 1561 ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~|~~~~ 1921 ~~~~~~~~~~ ~~~~~~(~~~ ~~~~~~~~~C -GGU-UA)-U ACGAGA|--- -GGC-CCU-- 1981 AGUUG-AUGG U-------au ugCGGC|GUA AAGGGUGGUU -A-ggg---- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 ------g--- -cuguaaccu aauaaa--gc -----|UGAA UAGCCC-UCC ----GGCC(G 2341 UCAUA)CGCU UC-------c AGGc-gcuaG AAA------- ---cccaauu aAAC(-GAAA 2401 -)GU|A---- ----gcuuua a-----uaaa auuca----- ccu-gaccCC ACGAG-AGCU 2461 A-AGA---AA CAAACUGGG( AUUAGAUAC) CCCA-CUAU| -GCUU-AGC- CUUAAA-CCC 2521 A--GACA-UU |UA|------ ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- --a(auac)a a--cA-CAUG 2701 U-C|--c-GC C-AGGG-UAC UACGAGC(-- -AUUA--)GC UUA--AAACC CAAAGGAC-C 2761 UG|ACGGUG- CCUCAGA-CC CCCCUAGA|G GAGCCUGU-U |CUAGA--AC CG(AUAACCC 2821 C--------- ----)CGUUA A-ACCUCACC ACUUCUAGUC ---------- ---------- 2881 (-------ac cc-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGC CUA-UA|UA- 3121 |CC|-GC--C |G------UC GC-CA|G-CU UAC-|CCU(G --UGA)AGG- -----(caa- 3181 uaa)------ g-aGUAAGCA AAA-UGGG-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ----cauaa- 3781 ---------C CCAGAA-CGU C-AGGUCGAG G|UGUA|GCG CAC------- ---------G 3841 A-A-GU-GG- GA-AGA--AA -UGGGCUACA UU--UUCUG- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--c ua---)---- ---------- ---------- CAG-AAcac- 4021 ---------- -----UACGA --AUACG-CA ACA(------ ---------- ---------- 4081 ---------- ---------- UGAAA----) U-AG-U--GC -U--UGAAG- -GAGGAUUUA 4141 G-U--AGUAA A-AAGGAA(- agaga-gu-- --)GUCCUUU U-GAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -CCC--GGCU 4261 CUGAGA-CG- CGUACACA-C -CGCCCGUCA C-UCU--CCC CU-------- ---------- 4321 ---------- ---------- ---------- ---------- ---------< -gucaaaau- 4381 gcaauuaaau auuccuaaug cuagagcacu gaca------ ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- ---------A GGGG-AGG-C AAGUCGUAAC AUGGUAAG-U GUA-CC(GGA 4621 -A)GGU-GU- ACUUGG---- ---------| ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- --------|| ||| // LOCUS mt.R.o.o.2 5213 bp RNA RNA 08-JAN-1999 DEFINITION Rhodeus ocellatus ocellatus.; . ACCESSION AB0166 8 KEYWORDS . SOURCE Rhodeus ocellatus ocellatus. ORGANISM Rhodeus ocellatus ocellatus. REFERENCE 1 (bases 1 to 701) AUTHORS Okazaki,M. TITLE Phylogenetic relationships of Acheilognathinae (Cyprinidae) JOURNAL Published Only in DataBase (1999) In press STANDARD No information REFERENCE 2 (bases 1 to 701) AUTHORS Okazaki,M. TITLE Direct Submission JOURNAL Submitted (01-AUG-1998) to the DDBJ/EMBL/GenBank databases. Masahiro Okazaki, University of Tokyo, Depertment of Biological Sciences, Graduate School of Science; Hongo 7-3-1, Bunkyo-ku, Tokyo 113, Japan (E-mail: ss87193@Hongo.ecc.u-tokyo.ac.jp, Tel: 03-3812-2111) STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: AB016698 BASE COUNT 218 a 176 c 161 g 146 t 4512 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --~~~~~~~~ 661 (~~~~)~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~|~~~~ ~~~~~~~(~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~)~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~~~~ ~~~~~)~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~(~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~)~~~ 1381 ~~~~~|~~~~ ~~~~~~~~~~ ~|~~~~~~~~ ~~|~~~~~~~ (~~~~~~)~~ ~~~~~~~~~| 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|~~~~~~~( ~~~~~)~~~~ ~~~~~~~~~~ 1501 ~~~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~( ~~~~~~~~~~ ~~~~~~~~)~ ~~~~~~~~~| 1561 ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~|~~~~ 1921 ~~~~~~~~~~ ~~~~~~(~~~ ~~~~~~~~~C -GGU-UA)-U ACGAGA|--- -GGC-CCU-- 1981 AGUUG-AUGG U-------au ugCCGC|GUA AAGGGUGGUU -A-ggg---- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 ------g--- -cuguaaccu aauaaa--gc -----|UGAA UAGCCC-UCC ----GGCC(G 2341 UCAUA)CGCU UC-------c AGGc-gcuaG AAA------- ---cccaauu aAAC(-GAAA 2401 -)GU|A---- ----gcuuua a-----uaaa auuca----- ccu-gaccCC ACGAG-AGCU 2461 A-AGA---AA CAAACUGGG( AUUAGAUAC) CCCA-CUAU| -GCUU-AGC- CUUAAA-CCC 2521 A--GACA-UU |UA|------ ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- --a(auac)a a--cA-CAUG 2701 U-C|--c-GC C-AGGG-UAC UACGAGC(-- -AUUA--)GC UUA--AAACC CAAAGGAC-C 2761 UG|ACGGUG- CCUCAGA-CC CCCCUAGA|G GAGCCUGU-U |CUAGA--AC CG(AUAACCC 2821 C--------- ----)CGUUA A-ACCUCACC ACUUCUAGUC ---------- ---------- 2881 (-------ac cc-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGC CUA-UA|UA- 3121 |CC|-GC--C |G------UC GC-CA|G-CU UAC-|CCU(G --UGA)AGG- -----(caa- 3181 uaa)------ g-aGUAAGCA AAA-UGGG-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ----cauaa- 3781 ---------C CCAGAA-CGU C-AGGUCGAG G|UGUA|GCG CAC------- ---------G 3841 A-A-GU-GG- GA-AGA--AA -UGGGCUACA UU--UUCUG- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--c ua---)---- ---------- ---------- CAG-AAcac- 4021 ---------- -----UACGA --AUACG-CA ACA(------ ---------- ---------- 4081 ---------- ---------- UGAAA----) U-AG-U--GC -U--UGAAG- -GAGGAUUUA 4141 G-U--AGUAA A-AAGGAA(- agaga-gu-- --)GUCCUUU U-GAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -CCC--GGCU 4261 CUGAGA-CG- CGUACACA-C -CGCCCGUCA C-UCU--CCC CU-------- ---------- 4321 ---------- ---------- ---------- ---------- ---------< -gucaaaau- 4381 gcaauuaaau auuccuaaug cuagagcacu gaca------ ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- ---------A GGGG-AGG-C AAGUCGUAAC AUGGUAAG-U GUA-CC(GGA 4621 -A)GGU-GU- ACUUGG---- ---------| ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- --------|| ||| // LOCUS mt.R.o.o.3 5213 bp RNA RNA 08-JAN-1999 DEFINITION Rhodeus ocellatus ocellatus.; . ACCESSION AB0166 9 KEYWORDS . SOURCE Rhodeus ocellatus ocellatus. ORGANISM Rhodeus ocellatus ocellatus. REFERENCE 1 (bases 1 to 701) AUTHORS Okazaki,M. TITLE Phylogenetic relationships of Acheilognathinae (Cyprinidae) JOURNAL Published Only in DataBase (1999) In press STANDARD No information REFERENCE 2 (bases 1 to 701) AUTHORS Okazaki,M. TITLE Direct Submission JOURNAL Submitted (01-AUG-1998) to the DDBJ/EMBL/GenBank databases. Masahiro Okazaki, University of Tokyo, Depertment of Biological Sciences, Graduate School of Science; Hongo 7-3-1, Bunkyo-ku, Tokyo 113, Japan (E-mail: ss87193@Hongo.ecc.u-tokyo.ac.jp, Tel: 03-3812-2111) STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: AB016699 BASE COUNT 218 a 174 c 162 g 147 t 4512 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --~~~~~~~~ 661 (~~~~)~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~|~~~~ ~~~~~~~(~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~)~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~~~~ ~~~~~)~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~(~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~)~~~ 1381 ~~~~~|~~~~ ~~~~~~~~~~ ~|~~~~~~~~ ~~|~~~~~~~ (~~~~~~)~~ ~~~~~~~~~| 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|~~~~~~~( ~~~~~)~~~~ ~~~~~~~~~~ 1501 ~~~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~( ~~~~~~~~~~ ~~~~~~~~)~ ~~~~~~~~~| 1561 ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~|~~~~ 1921 ~~~~~~~~~~ ~~~~~~(~~~ ~~~~~~~~~C -GGU-UA)-U ACGAGA|--- -GGC-CCU-- 1981 AGUUG-AUGG U-------au ugCGGU|GUA AAGGGUGGUU -A-ggg---- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 ------g--- -cuguaaccu aauaaa--gc -----|UGAA UAGCCC-UCC ----GGCC(G 2341 UCAUA)CGCU UC-------c AGGc-gcuaG AAA------- ---cccaauu aAAC(-GAAA 2401 -)GU|A---- ----gcuuua a-----uaaa auuca----- ccu-gaccCC ACGAG-AGCU 2461 A-AGA---AA CAAACUGGG( AUUAGAUAC) CCCA-CUAU| -GCUU-AGC- CUUAAA-CCC 2521 A--GACA-UU |UA|------ ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- --a(auac)a a--cA-CAUG 2701 U-C|--c-GC C-AGGG-UAC UACGAGC(-- -AUUA--)GC UUA--AAACC CAAAGGAC-C 2761 UG|ACGGUG- CCUCAGA-CC CCCCUAGA|G GAGCCUGU-U |CUAGA--AC CG(AUAACCC 2821 C--------- ----)CGUUA A-ACCUCACC ACUUCUAGUC ---------- ---------- 2881 (-------ac cc-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGC CUA-UA|UA- 3121 |CC|-GC--C |G------UC GC-CA|G-CU UAC-|CCU(G --UGA)AGG- -----(caa- 3181 uaa)------ g-aGUAAGCA AAA-UGGG-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ----cauaa- 3781 ---------C CCAGAA-CGU C-AGGUCGAG G|UGUA|GCG CAC------- ---------G 3841 A-A-GU-GG- GA-AGA--AA -UGGGCUACA UU--UUCUG- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--c ua---)---- ---------- ---------- CAG-AAcac- 4021 ---------- -----UACGA --AUACG-CA ACA(------ ---------- ---------- 4081 ---------- ---------- UGAAA----) U-AG-U--GC -U--UGAAG- -GAGGAUUUA 4141 G-U--AGUAA A-AAGGAA(- agaga-gu-- --)GUCCUUU U-GAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -CCC--GGCU 4261 CUGAGA-CG- CGUACACA-C -CGCCCGUCA C-UCU--CCC CU-------- ---------- 4321 ---------- ---------- ---------- ---------- ---------< -gucaaaau- 4381 gcaauuaaau auuccuaaug cuagagcacu gaca------ ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- ---------A GGGG-AGG-C AAGUCGUAAC AUGGUAAG-U GUA-CC(GGA 4621 -A)GGU-GU- ACUUGG---- ---------| ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- --------|| ||| // LOCUS mt.R.s.a.1 5213 bp RNA RNA 08-JAN-1999 DEFINITION Rhodeus sericeus amarus.; . ACCESSION AB0167 0 KEYWORDS . SOURCE Rhodeus sericeus amarus. ORGANISM Rhodeus sericeus amarus. REFERENCE 1 (bases 1 to 697) AUTHORS Okazaki,M. TITLE Phylogenetic relationships of Acheilognathinae (Cyprinidae) JOURNAL Published Only in DataBase (1999) In press STANDARD No information REFERENCE 2 (bases 1 to 697) AUTHORS Okazaki,M. TITLE Direct Submission JOURNAL Submitted (01-AUG-1998) to the DDBJ/EMBL/GenBank databases. Masahiro Okazaki, University of Tokyo, Depertment of Biological Sciences, Graduate School of Science; Hongo 7-3-1, Bunkyo-ku, Tokyo 113, Japan (E-mail: ss87193@Hongo.ecc.u-tokyo.ac.jp, Tel: 03-3812-2111) STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: AB016700 BASE COUNT 215 a 181 c 160 g 141 t 4516 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --~~~~~~~~ 661 (~~~~)~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~|~~~~ ~~~~~~~(~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~)~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~~~~ ~~~~~)~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~(~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~)~~~ 1381 ~~~~~|~~~~ ~~~~~~~~~~ ~|~~~~~~~~ ~~|~~~~~~~ (~~~~~~)~~ ~~~~~~~~~| 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|~~~~~~~( ~~~~~)~~~~ ~~~~~~~~~~ 1501 ~~~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~( ~~~~~~~~~~ ~~~~~~~~)~ ~~~~~~~~~| 1561 ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~|~~~~ 1921 ~~~~~~~~~~ ~~~~~~(~~~ ~~~~~~~~~C -GGU-UA)-U ACGAGA|--- -GGC-CCC-- 1981 AGUUG-ACAG U-------ac ugCGGC|GUA AAGGGUGGUU -A-aag---- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 ------c--- -cugcaacuu aauaaa--ga -----|UAAA UAGUCC-CCC ----GGCC(G 2341 UCAUA)CGCU UC-------u AGGc-gcuaG AAA------- ---cccaa-u aUAC(-GAAA 2401 -)GU|A---- ----gcuuua g------cau caccg----- ccu-gaccCC ACGAA-AGCU 2461 G-AGg---AA CAAACUGGG( AUUAGAUAC) CCCA-CUAU| -GCUC-AGC- CAUAAA-CCC 2521 A--GACA-UU |UU|------ ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- --u(auac)a a--cA-CAUG 2701 U-C|--c-GC C-AGGG-UAC UACGAGC(-- -AUUA--)GC UUA--AAACC CAAAGGAC-- 2761 UG|ACGGUG- CCUCAGA-CC CCCCUAGA|G GAGCCUGU-U |CUAGA--AC CG(AUAACCC 2821 C--------- ----)CGUUA A-ACCUCACC ACUUCUGGUC ---------- ---------- 2881 (-------au cc-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGC CUA-UA|UA- 3121 |CC|-GC--C |G------UC GC-CA|C-GU UAC-|CCU(G --UGA)AGG- -----(uaa- 3181 uaa)------ a-aGUAAGCA AAA-UGGG-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ----cacaa- 3781 ---------C CCAGAA-CGU C-AGGUCGAG G|UGUA|GCG CAC------- ---------G 3841 A-A-GU-GG- GA-AGA--AA -UGGGCUACA UU--UUCUU- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--a ug---)---- ---------- ---------- CAG-AAcac- 4021 ---------- -----UACGG --AUGCG-CA ACA(------ ---------- ---------- 4081 ---------- ---------- UGAAA----) U-AG-U--GC -U--UGAAG- -GAGGAUUUA 4141 G-U--AGUAA A-AAGGAA(- aaaga-gu-- --)GUCCUUU U-GAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -CCC--GGCU 4261 CUGAGA-CG- CGUACACA-C -CGCCCGUCA C-UCU--CCC CU-------- ---------- 4321 ---------- ---------- ---------- ---------- ---------< -gucaaaau- 4381 gcaau-caau auacguaauu ccacagcacu gaca------ ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- ---------A GGGG-AGG-C AAGUCGUAAC AUGGUAAG-U GUA-CC(GGA 4621 -A)GGU-GC- ACUUGG---- ---------| ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- --------|| ||| // LOCUS mt.R.s.a.2 5213 bp RNA RNA 08-JAN-1999 DEFINITION Rhodeus sericeus amarus.; . ACCESSION AB0167 1 KEYWORDS . SOURCE Rhodeus sericeus amarus. ORGANISM Rhodeus sericeus amarus. REFERENCE 1 (bases 1 to 697) AUTHORS Okazaki,M. TITLE Phylogenetic relationships of Acheilognathinae (Cyprinidae) JOURNAL Published Only in DataBase (1999) In press STANDARD No information REFERENCE 2 (bases 1 to 697) AUTHORS Okazaki,M. TITLE Direct Submission JOURNAL Submitted (01-AUG-1998) to the DDBJ/EMBL/GenBank databases. Masahiro Okazaki, University of Tokyo, Depertment of Biological Sciences, Graduate School of Science; Hongo 7-3-1, Bunkyo-ku, Tokyo 113, Japan (E-mail: ss87193@Hongo.ecc.u-tokyo.ac.jp, Tel: 03-3812-2111) STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: AB016701 BASE COUNT 214 a 182 c 160 g 141 t 4516 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --~~~~~~~~ 661 (~~~~)~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~|~~~~ ~~~~~~~(~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~)~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~~~~ ~~~~~)~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~(~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~)~~~ 1381 ~~~~~|~~~~ ~~~~~~~~~~ ~|~~~~~~~~ ~~|~~~~~~~ (~~~~~~)~~ ~~~~~~~~~| 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|~~~~~~~( ~~~~~)~~~~ ~~~~~~~~~~ 1501 ~~~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~( ~~~~~~~~~~ ~~~~~~~~)~ ~~~~~~~~~| 1561 ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~|~~~~ 1921 ~~~~~~~~~~ ~~~~~~(~~~ ~~~~~~~~~C -GGU-UA)-U ACGAGA|--- -GGC-CCC-- 1981 AGUUG-ACAG U-------ac ugCGGC|GUA AAGGGUGGUU -A-aag---- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 ------c--- -cugcaacuu aauaaa--gc -----|UAAA UAGUCC-CCC ----GGCC(G 2341 UCAUA)CGCU UC-------u AGGc-gcuaG AAA------- ---cccaa-u aUAC(-GAAA 2401 -)GU|A---- ----gcuuua g------cau caccg----- ccu-gaccCC ACGAA-AGCU 2461 G-AGg---AA CAAACUGGG( AUUAGAUAC) CCCA-CUAU| -GCUC-AGC- CAUAAA-CCC 2521 A--GACA-UU |UU|------ ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- --u(auac)a a--cA-CAUG 2701 U-C|--c-GC C-AGGG-UAC UACGAGC(-- -AUUA--)GC UUA--AAACC CAAAGGAC-- 2761 UG|ACGGUG- CCUCAGA-CC CCCCUAGA|G GAGCCUGU-U |CUAGA--AC CG(AUAACCC 2821 C--------- ----)CGUUA A-ACCUCACC ACUUCUGGUC ---------- ---------- 2881 (-------au cc-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGC CUA-UA|UA- 3121 |CC|-GC--C |G------UC GC-CA|G-CU UAC-|CCU(G --UGA)AGG- -----(uaa- 3181 uaa)------ a-aGUAAGCA AAA-UGGG-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ----cacaa- 3781 ---------C CCAGAA-CGU C-AGGUCGAG G|UGUA|GCG CAC------- ---------G 3841 A-A-GU-GG- GA-AGA--AA -UGGGCUACA UU--UUCUU- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--a ug---)---- ---------- ---------- CAG-AAcac- 4021 ---------- -----UACGG --AUGCG-CA ACA(------ ---------- ---------- 4081 ---------- ---------- UGAAA----) U-AG-U--GC -U--UGAAG- -GAGGAUUUA 4141 G-U--AGUAA A-AAGGAA(- aaaga-gu-- --)GUCCUUU U-GAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -CCC--GGCU 4261 CUGAGA-CG- CGUACACA-C -CGCCCGUCA C-UCU--CCC CU-------- ---------- 4321 ---------- ---------- ---------- ---------- ---------< -gucaaaau- 4381 gcaau-caau auacguaauu ccacagcacu gaca------ ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- ---------A GGGG-AGG-C AAGUCGUAAC AUGGUAAG-U GUA-CC(GGA 4621 -A)GGU-GC- ACUUGG---- ---------| ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- --------|| ||| // LOCUS mt.S.atrom 5213 bp RNA RNA 20-OCT-1997 DEFINITION Mitochondrion Semotilus atromaculatus.; . ACCESSION AF023199 KEYWORDS . SOURCE Mitochondrion Semotilus atromaculatus. ORGANISM Mitochondrion Semotilus atromaculatus. REFERENCE 1 (bases 1 to 955) AUTHORS Simons,A.M. and Mayden,R.L. TITLE Phylogenetic Relationships of the Creek Chubs and the Spine-Fins: an Enigmatic Group of North American Cyprinid Fishes (Actinopterygii: Cyprinidae) JOURNAL Cladistics 13 (3) (1997) In press STANDARD No information REFERENCE 2 (bases 1 to 955) AUTHORS Simons,A.M. and Mayden,R.L. TITLE Direct Submission JOURNAL Submitted (08-SEP-1997) Department of Biological Sciences, The University of Alabama, Box 870344, Tuscaloosa, AL 35487-0344, USA STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: AF023199 BASE COUNT 281 a 242 c 225 g 207 t 4258 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --caaAGGCA 661 (UGG-)U-CC C|GACCU-UA UUA-UCAGCU -U-UAAC-CC |AA-CU--UA -CAC-A-UGC 721 -AAGu----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------cuc c)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------|- gCAGCCCUGU GAGUA---UG C|CCU-Uaa- --uc-cc--- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- --(cugcccg -----)---- 1261 ---------- ---------- --gg--ga-- --cGAGGAGC |--------- GGGUAUCA-- 1321 -GGCACAA-- -----(auuu ---------- ---------- ---------- ------)--- 1381 ---UU|---A GCCCA--AGA C|GCCUA-GC --|------- (-cuu--)-- -------GC| 1441 CACA------ ---------- ---------- -|-CCCC--( CAAG-)--GG AAuu---C-A 1501 GCA|GUG-AU AAAUAUUAAG C-CAUGAGU( ---------- ----GAAA)A CUUGA-CUC| 1561 A|-GUUA-G- GG-UUA---a ga-------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- GGGCC|-GGU 1921 -AAA-A---C UCGU-G(-CC AGCCACC-GC -GGU-UA)-A ACGAGA|--- -GGC-CCU-- 1981 AGUUG-AUAG U-------ac aaCGGC|GUA AAGGGUGGUU -A-agg---- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 ------g--- ---ugaacaa aauaaa--gc -----|CGAA uggcCC-UUU ----GGCU(G 2341 UCAUA)CGCU UC-------u AGGu-gccuG AAG------- ---cccaaca -UAC(-GAAA 2401 -)GU|C---- ----gcuuua a-----agua gccua----- ccu-gaucCC ACGAA-AACU 2461 G-AGA---AA CAAACUGGG( AUUAGAUAC) CCCA-CUAU| -GCUC-AGU- CGUAAA-CUU 2521 A--GACG-UC |CA|------ ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- --a(cuac)a a--uuaGACG 2701 U-U|--C|GC C-CGGG-UAC UACGAGC(-- -AUUA--)GC UUG--AAACC CAAAGGAC-C 2761 UG|ACGGUG- CCUUAGA-CC CCCCUAGA|G GAGCCUGU-U |CUAGA--AC CG(AUAACCC 2821 U--------- ----)CGUUA A-ACCUCACC ACUUCUGGCC ---------- ---------- 2881 (-------cc cc-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- -C-C---AGC CUA-UA|UA- 3121 |CC|-GC--C |G------UC GU-CA|G-CU UAC-|CCU(G --UGA)AGG- -----(uaa- 3181 uag)------ a-aGUAAGCA GAA-UGGG-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ----cacaa- 3781 ---------C CCAAAA-CGU C-AGGUCGAG G|UGUA|GCG UAC------- ---------G 3841 A-A-GU-GG- GA-AGA--AA -UGGGCUACA UU--UUCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--u ua---)---- ---------- ---------- UAG-AAcac- 4021 ---------- -----UACGG --ACAUG-CA ACA(------ ---------- ---------- 4081 ---------- ---------- UGAAA----) U-AG-U--GC -U--UGAAG- -GAGGAUUUA 4141 G-u--AGUAA A-AAGGAA(- gcagc-gu-- --)GUCCUUU U-GAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -CUC--GGCU 4261 CUGAGG-CG- CGUACACA-C -CGCCCGUCA C-UCU--CUC CU-------- ---------- 4321 ---------- ---------- ---------- ---------- ---------< -gucuaaau- 4381 gcaau-auaa auacuuaaua ucacugcgcu gacg------ ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- ---------A GGGG-AGG-C AAGUCGUAAC AUGGUAAG-U GUA-CC(GGA 4621 -A)-GU-GU- ACUUGGACUA AAU------| ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- --------|| ||| // LOCUS mt.S.thore 5213 bp RNA RNA 20-OCT-1997 DEFINITION Mitochondrion Semotilus thoreauianus.; . ACCESSION AF023200 KEYWORDS . SOURCE Mitochondrion Semotilus thoreauianus. ORGANISM Mitochondrion Semotilus thoreauianus. REFERENCE 1 (bases 1 to 954) AUTHORS Simons,A.M. and Mayden,R.L. TITLE Spine-Fins: an Enigmatic Group of North American Cyprinid Fishes (Actinopterygii: Cyprinidae) Phylogenetic Relationships of the Creek Chubs and the JOURNAL Cladistics 13 (3) (1997) In press STANDARD No information REFERENCE 2 (bases 1 to 954) AUTHORS Simons,A.M. and Mayden,R.L. TITLE Direct Submission JOURNAL Submitted (08-SEP-1997) Department of Biological Sciences, The University of Alabama, Box 870344, Tuscaloosa, AL 35487-0344, USA STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: AF023200 BASE COUNT 283 a 242 c 221 g 208 t 4259 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --uaaAGGCA 661 (UGG-)U-CC C|GUCCU-UA UUA-UCAGCU -C-UAAC-CC |GA-CU--UA -CAC-A-UGC 721 -AAGu----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------cuc c)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------|- gCAGCCCUGU GAGUA---UG C|CCU-Uaa- --uc-cc--- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- --(cugcccg -----)---- 1261 ---------- ---------- --gg--ga-- --cGAGGAGC |--------- GGGUAUCA-- 1321 -GGCACAA-- -----(auu- ---------- ---------- ---------- ------)--- 1381 ---UU|---A GCCCA--AGA C|ACCUA-GC --|------- (-cuu--)-- -------GC| 1441 CACA------ ---------- ---------- -|-CCCC--( CAAG-)--GG AAuu---C-A 1501 GCA|GUG-AU AAAUAUUAAG C-CAUAAGU( ---------- ----GAAA)G CUUGA-CUU| 1561 A|-GUCA-A- GG-UUA---a ga-------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- GGGCC|-GGU 1921 -AAA-A---C UCGU-G(-CC AGCCACC-GC -GGU-UA)-A ACGAGA|--- -GGC-CCC-- 1981 AGUUG-AUAG U-------au aaCGGC|GUA AAGGGUGGUU -A-agg---- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 ------g--- ---ugcacga aauaaa--gc -----|CAAA aggcCC-UUU ----GGCU(G 2341 UCAUA)CGCU UC-------u AGGu-gccuG AAG------- ---cccaaca -UAC(-GAAA 2401 -)GU|C---- ----gcuuua a-----aaua gccug----- ccu-gaccCC ACGAA-AACU 2461 G-AGA---AA CAAACUGGG( AUUAGAUAC) CCCA-CUAU| -GCUC-AGU- UGUAAA-CUU 2521 A--GACG-UC |CA|------ ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- --a(cuac)a a--uuaGACG 2701 U-C|--C|GC C-CGGG-UAC UACGAGC(-- -AUUA--)GC UUA--AAACC CAAAGGAC-C 2761 UG|ACGGUG- CCUUAGA-CC CCCCUAGA|G GAGCCUGU-U |CUAGA--AC CG(AUAAUCC 2821 U--------- ----)CGUUA A-ACCUCACC ACUUCUGGCC ---------- ---------- 2881 (-------cc uu-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- -C-C---AGC CUG-UA|UA- 3121 |CC|-GC--C |G------UC GU-CA|G-CU UAC-|CCU(G --UGA)AGG- -----(uaa- 3181 uaa)------ a-aGUAAUCA AAA-UGGA-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ----cauag- 3781 ---------C CCAAGA-CGU C-AGGUCAAG G|UGUA|GCG UAU------- ---------G 3841 A-A-GU-GG- GA-AGA--AA -UGGGCUACA UU--UUCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--u aa---)---- ---------- ---------- UAG-AAcac- 4021 ---------- -----UACGG --AUCUG-CA ACA(------ ---------- ---------- 4081 ---------- ---------- UGAAA----) U-AG-U--GC -U--UGAAG- -GAGGAUUUA 4141 G-u--AGUAA A-AAGGAA(- gcagc-gu-- --)GUCCUUU U-GAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -CCC--GGCU 4261 CUGAGG-CG- CGUACACA-C -CGCCCGUCA C-UCU--CCC CU-------- ---------- 4321 ---------- ---------- ---------- ---------- ---------< -gucuuaau- 4381 gcaau-auaa auacuuaaua ccaacgcgcu gacg------ ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- ---------A GGGG-AGG-C AAGUCGUAAC AUGGUAAG-U GUA-CC(GGA 4621 -A)-GU-GU- ACUUGGACUA AAU------| ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- --------|| ||| // LOCUS mt.T.himan 5213 bp RNA RNA 08-JAN-1999 DEFINITION Tanakia himantegus.; . ACCESSION AB0167 2 KEYWORDS . SOURCE Tanakia himantegus. ORGANISM Tanakia himantegus. REFERENCE 1 (bases 1 to 698) AUTHORS Okazaki,M. TITLE Phylogenetic relationships of Acheilognathinae (Cyprinidae) JOURNAL Published Only in DataBase (1999) In press STANDARD No information REFERENCE 2 (bases 1 to 698) AUTHORS Okazaki,M. TITLE Direct Submission JOURNAL Submitted (01-AUG-1998) to the DDBJ/EMBL/GenBank databases. Masahiro Okazaki, University of Tokyo, Depertment of Biological Sciences, Graduate School of Science; Hongo 7-3-1, Bunkyo-ku, Tokyo 113, Japan (E-mail: ss87193@Hongo.ecc.u-tokyo.ac.jp, Tel: 03-3812-2111) STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: AB016702 BASE COUNT 225 a 176 c 154 g 143 t 4515 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --~~~~~~~~ 661 (~~~~)~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~|~~~~ ~~~~~~~(~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~)~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~~~~ ~~~~~)~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~(~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~)~~~ 1381 ~~~~~|~~~~ ~~~~~~~~~~ ~|~~~~~~~~ ~~|~~~~~~~ (~~~~~~)~~ ~~~~~~~~~| 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|~~~~~~~( ~~~~~)~~~~ ~~~~~~~~~~ 1501 ~~~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~( ~~~~~~~~~~ ~~~~~~~~)~ ~~~~~~~~~| 1561 ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~|~~~~ 1921 ~~~~~~~~~~ ~~~~~~(~~~ ~~~~~~~~~C -GGU-UA)-U ACGAGA|--- -GGC-CCU-- 1981 AGUUA-AUAG U-------au uaCGGC|GUA AAGGGUGGUU -A-agg---- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 ---------- -guuacaucc aauaaa--gc -----|CAAA UAGCCC-UCU ----GGCC(G 2341 UCAUA)CGCU UC-------c AGGc-gcuaG AAA------- --uccaaauu acAC(-GAAA 2401 -)GU|A---- ----gcuuua ------auaa uauua----- ccu-gaccCC ACGAA-AGCU 2461 G-AGA---AA CAAACUGGG( AUUAGAUAC) CCCA-CUAU| -GCUC-AGC- CGUAUA-CCC 2521 A--GACA-UU |UA|------ ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- --g(acac)a --ucA-CAUG 2701 U-C|--c-GC C-AGGG-UAC UACAAGC(-- -AUUA--)GC UUA--AAACC CAAAGGA--C 2761 UG|ACGGUG- CCUUAGA-CC CCCCUAGA|G GAGCCUGU-U |CUAGA--AC CG(AUAACCC 2821 C--------- ----)CGUUA A-ACCUCACC ACUCCUGGUC ---------- ---------- 2881 (-------ac cc-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGC CUA-UA|UA- 3121 |CC|-GC--C |G------UC GC-CA|G-CU UAC-|CCU(G --UGA)AGG- -----(uaa- 3181 uaa)------ a-aGUAAGCA AAA-UGGG-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ----cacaa- 3781 ---------C CCAAAA-CGU C-AGGUCGAG G|UGUA|GCG CAC------- ---------G 3841 G-A-GU-GG- GA-AGA--AA -UGGGCUACA UU--UUCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--a ua---)---- ---------- ---------- CAG-AAcac- 4021 ---------- -----UACGA --AUACG-CA ACA(------ ---------- ---------- 4081 ---------- ---------- UGAAA----) U-AG-U--GC -U--UGAAG- -GAGGAUUUA 4141 G-U--AGUAA A-AAGGAA(- aaaga-gu-- --)GUCCUUU U-GAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -CCC--GGCU 4261 CUGAGA-CG- CGUACACA-C -CGCCCGUCA C-UCU--CCC CU-------- ---------- 4321 ---------- ---------- ---------- ---------- ---------< -gucaaaau- 4381 gcaac-aaac auauuuaaua ccaaagcgcu gaca------ ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- ---------A GGGG-AGG-C AAGUCGUAAC AUGGUAAG-U GUA-CC(GGA 4621 -A)GGU-GC- ACUUGG---- ---------| ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- --------|| ||| // LOCUS mt.T.lan.1 5213 bp RNA RNA 08-JAN-1999 DEFINITION Tanakia lanceolata.; . ACCESSION AB0167 3 KEYWORDS . SOURCE Tanakia lanceolata. ORGANISM Tanakia lanceolata. REFERENCE 1 (bases 1 to 698) AUTHORS Okazaki,M. TITLE Phylogenetic relationships of Acheilognathinae (Cyprinidae) JOURNAL Published Only in DataBase (1999) In press STANDARD No information REFERENCE 2 (bases 1 to 698) AUTHORS Okazaki,M. TITLE Direct Submission JOURNAL Submitted (01-AUG-1998) to the DDBJ/EMBL/GenBank databases. Masahiro Okazaki, University of Tokyo, Depertment of Biological Sciences, Graduate School of Science; Hongo 7-3-1, Bunkyo-ku, Tokyo 113, Japan (E-mail: ss87193@Hongo.ecc.u-tokyo.ac.jp, Tel: 03-3812-2111) STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: AB016703 BASE COUNT 214 a 185 c 164 g 135 t 4515 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --~~~~~~~~ 661 (~~~~)~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~|~~~~ ~~~~~~~(~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~)~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~~~~ ~~~~~)~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~(~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~)~~~ 1381 ~~~~~|~~~~ ~~~~~~~~~~ ~|~~~~~~~~ ~~|~~~~~~~ (~~~~~~)~~ ~~~~~~~~~| 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|~~~~~~~( ~~~~~)~~~~ ~~~~~~~~~~ 1501 ~~~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~( ~~~~~~~~~~ ~~~~~~~~)~ ~~~~~~~~~| 1561 ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~|~~~~ 1921 ~~~~~~~~~~ ~~~~~~(~~~ ~~~~~~~~~C -GGU-UA)-U ACGAGA|--- -GGC-CCC-- 1981 AGUUG-AUAA U-------ac cgCGGC|GUA AAGGGUGGUU -A-agg---- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 ------g--- -cuccaa-cc aauaaa--gc -----|UAAA UAGCCC-UCC ----GGCC(G 2341 UCAUA)CGCU UC-------c AGGc-gcuaG AGA------- ---cccaauu uUAC(-GAAA 2401 -)GU|A---- ----gcuuua g-----uaac acuca----- ccu-gaccCC ACGAA-AGCU 2461 A-AGA---AA CAAACUGGG( AUUAGAUAC) CCCA-CUAU| -GCUU-AGU- CAUAAA-CCC 2521 A--GACA-UC |GA|------ ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- --a(auac)a a-uuG-UAUG 2701 U-C|--C|GC C-AGGG-CAC UACGAGC(-- -AUUA--)GC UUG--AAACC CAAAGGAC-- 2761 UG|ACGGUG- CCUCAGA-CC CCCCUAGA|G GAGCCUGU-C |CUAGA--AC CG(AUAACCC 2821 C--------- ----)CGUUA A-ACCUCACC ACUUCUGGUC ---------- ---------- 2881 (-------uc cc-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGC CUA-UA|UA- 3121 |CC|-GC--C |G------UC GC-CA|G-CU UAC-|CCU(G --UGA)GGG- -----(aaa- 3181 -ca)------ a-aGUAAGCA AAA-UGGG-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ----cacaa- 3781 ---------C CCAGAA-CGU C-AGGUCGAG G|UGUA|GCG CAU------- ---------G 3841 A-A-GU-GG- GA-AGA--GA -UGGGCUACA UU--UUCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--u cg---)---- ---------- ---------- CAG-AAuac- 4021 ---------- -----UACGA --AUGCG-CA ACA(------ ---------- ---------- 4081 ---------- ---------- UGAAA----) U-AG-U--GC -U--UGAAG- -GAGGAUUUA 4141 G-A--AGUAA A-AAGGAA(- gaaga-gu-- --)GUCCUUU U-GAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -CCC--GGCU 4261 CUGAGG-CG- CGUACACA-C -CGCCCGUCA C-UCU--CCC CU-------- ---------- 4321 ---------- ---------- ---------- ---------- ---------< -gucaaaau- 4381 gcaac-aaac uuaccuaacc acaaagcgcu gaca------ ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- ---------A GGGG-AGG-C AAGUCGUAAC AUGGUAAG-U GUA-CC(GGA 4621 -A)GGU-GC- ACUUGG---- ---------| ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- --------|| ||| // LOCUS mt.T.lan.2 5213 bp RNA RNA 08-JAN-1999 DEFINITION Tanakia lanceolata.; . ACCESSION AB0167 4 KEYWORDS . SOURCE Tanakia lanceolata. ORGANISM Tanakia lanceolata. REFERENCE 1 (bases 1 to 699) AUTHORS Okazaki,M. TITLE Phylogenetic relationships of Acheilognathinae (Cyprinidae) JOURNAL Published Only in DataBase (1999) In press STANDARD No information REFERENCE 2 (bases 1 to 699) AUTHORS Okazaki,M. TITLE Direct Submission JOURNAL Submitted (01-AUG-1998) to the DDBJ/EMBL/GenBank databases. Masahiro Okazaki, University of Tokyo, Depertment of Biological Sciences, Graduate School of Science; Hongo 7-3-1, Bunkyo-ku, Tokyo 113, Japan (E-mail: ss87193@Hongo.ecc.u-tokyo.ac.jp, Tel: 03-3812-2111) STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: AB016704 BASE COUNT 211 a 191 c 166 g 131 t 4514 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --~~~~~~~~ 661 (~~~~)~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~|~~~~ ~~~~~~~(~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~)~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~~~~ ~~~~~)~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~(~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~)~~~ 1381 ~~~~~|~~~~ ~~~~~~~~~~ ~|~~~~~~~~ ~~|~~~~~~~ (~~~~~~)~~ ~~~~~~~~~| 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|~~~~~~~( ~~~~~)~~~~ ~~~~~~~~~~ 1501 ~~~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~( ~~~~~~~~~~ ~~~~~~~~)~ ~~~~~~~~~| 1561 ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~|~~~~ 1921 ~~~~~~~~~~ ~~~~~~(~~~ ~~~~~~~~~C -GGU-UA)-U ACGAGA|--- -GGC-CCC-- 1981 AGUUG-AUAA U-------ac cgCGGC|GUA AAGGGUGGUU -A-agg---- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 ------g--- -cuccaa-cc aauaaa--gc -----|UAAA UAGCCC-CCC ----GGCC(G 2341 UCAUA)CGCU UC-------c AGGc-gcuaG AGA------- ---cccaauu cCAC(-GAAA 2401 -)GU|A---- ----gcuuua g-----uaac acuca----- ccu-gaccCC ACGAA-AGCU 2461 G-AGA---AA CAAACUGGG( AUUAGAUAC) CCCA-CUAU| -GCUC-AGC- CAUAAA-CCC 2521 A--GACA-UC |GA|------ ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- --a(guac)a a-uuG-UGUG 2701 U-C|--C|GC C-AGGG-CAC UACGAGC(-- -AUUA--)GC UUG--AAACC CAAAGGAC-C 2761 UG|ACGGUG- CCUCAGA-CC CCCCUAGA|G GAGCCUGU-C |CUAGA--AC CG(AUAACCC 2821 C--------- ----)CGUUA A-ACCUCACC ACUUCUGGUC ---------- ---------- 2881 (-------uc cc-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGC CUA-UA|UA- 3121 |CC|-GC--C |G------UC GC-CA|G-CU UAC-|CCU(G --UGA)GGG- -----(aaa- 3181 -ca)------ a-aGUAAGCA AAA-aGGG-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ----cacaa- 3781 ---------C CCAGAA-CGU C-AGGUCGAG G|UGUA|GCG CAU------- ---------G 3841 A-A-GU-GG- GA-AGA--GA -UGGGCUACA UU--UUCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--u cg---)---- ---------- ---------- CAG-AAuac- 4021 ---------- -----UACGA --AUGCG-CA ACA(------ ---------- ---------- 4081 ---------- ---------- UGAAA----) U-AG-U--GC -U--UGAAG- -GAGGAUUUA 4141 G-U--AGUAA A-AAGGAA(- caaga-gu-- --)GUCCUUU U-GAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -CCC--GGCU 4261 CUGAGG-CG- CGUACACA-C -CGCCCGUCA C-UCU--CCC CU-------- ---------- 4321 ---------- ---------- ---------- ---------- ---------< -gucaaaau- 4381 gcaau-aaac uuaccuaacc acaaagcgcu gaca------ ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- ---------A GGGG-AGG-C AAGUCGUAAC AUGGUAAG-U GUA-CC(GGA 4621 -A)GGU-GC- ACUUGG---- ---------| ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- --------|| ||| // LOCUS mt.T.lan.3 5213 bp RNA RNA 08-JAN-1999 DEFINITION Tanakia lanceolata.; . ACCESSION AB0167 5 KEYWORDS . SOURCE Tanakia lanceolata. ORGANISM Tanakia lanceolata. REFERENCE 1 (bases 1 to 699) AUTHORS Okazaki,M. TITLE Phylogenetic relationships of Acheilognathinae (Cyprinidae) JOURNAL Published Only in DataBase (1999) In press STANDARD No information REFERENCE 2 (bases 1 to 699) AUTHORS Okazaki,M. TITLE Direct Submission JOURNAL Submitted (01-AUG-1998) to the DDBJ/EMBL/GenBank databases. Masahiro Okazaki, University of Tokyo, Depertment of Biological Sciences, Graduate School of Science; Hongo 7-3-1, Bunkyo-ku, Tokyo 113, Japan (E-mail: ss87193@Hongo.ecc.u-tokyo.ac.jp, Tel: 03-3812-2111) STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: AB016705 BASE COUNT 212 a 187 c 165 g 135 t 4514 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --~~~~~~~~ 661 (~~~~)~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~|~~~~ ~~~~~~~(~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~)~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~~~~ ~~~~~)~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~(~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~)~~~ 1381 ~~~~~|~~~~ ~~~~~~~~~~ ~|~~~~~~~~ ~~|~~~~~~~ (~~~~~~)~~ ~~~~~~~~~| 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|~~~~~~~( ~~~~~)~~~~ ~~~~~~~~~~ 1501 ~~~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~( ~~~~~~~~~~ ~~~~~~~~)~ ~~~~~~~~~| 1561 ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~|~~~~ 1921 ~~~~~~~~~~ ~~~~~~(~~~ ~~~~~~~~~C -GGU-UA)-U ACGAGA|--- -GGC-CCC-- 1981 AGUUG-AUAA U-------ac cgCGGC|GUA AAGGGUGGUU -A-agg---- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 ------g--- -cuccaa-cc aauaaa--gc -----|UAAA UAGCCC-CCC ----GGCC(G 2341 UCAUA)CGCU UC-------c GGGc-gcuaG AGA------- ---cccaauu gCAC(-GAAA 2401 -)GU|A---- ----gcuuua g-----uaau acuca----- ccu-gaccCC ACGAA-AGCU 2461 G-AGA---AA CAAACUGGG( AUUAGAUAC) CCCA-CUAU| -GCUC-AGC- CAUAAA-CCC 2521 A--GACA-UC |GA|------ ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- --a(auac)a a-uuG-UAUG 2701 U-C|--C|GC C-AGGG-CAC UACGAGC(-- -AUUA--)GC UUG--AAACC CAAAGGAC-C 2761 UG|ACGGUG- CCUCAGA-CC CCCCUAGA|G GAGCCUGU-C |CUAGA--AC CG(AUAACCC 2821 C--------- ----)CGUUU A-ACCUCACC ACUUCUGGUC ---------- ---------- 2881 (-------uc cc-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGC CUA-UA|UA- 3121 |CC|-GC--C |G------UC GC-CA|G-CU UAC-|CCU(G --UGA)AGG- -----(aaa- 3181 -ca)------ a-aGUAAGCA AAA-UGGG-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ----cacaa- 3781 ---------C CCAGAA-CGU C-AGGUCGAG G|UGUA|GCG CAU------- ---------G 3841 A-A-GU-GG- GA-AGA--GA -UGGGCUACA UU--UUCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--u ca---)---- ---------- ---------- UAG-AAuac- 4021 ---------- -----UACGA --AUGCG-CA ACA(------ ---------- ---------- 4081 ---------- ---------- UGAAA----) U-AG-U--GC -U--UGAAG- -GAGGAUUUA 4141 G-U--AGUAA A-AAGGAA(- gaaga-gu-- --)GUCCUUU U-GAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -CCC--GGCU 4261 CUGAGG-CG- CGUACACA-C -CGCCCGUCA C-UCU--CCC CU-------- ---------- 4321 ---------- ---------- ---------- ---------- ---------< -gucaaaau- 4381 gcaau-aaac uuaccuaacc acaaagcgcu gaca------ ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- ---------A GGGG-AGG-C AAGUCGUAAC AUGGUAAG-U GUA-CC(GGA 4621 -A)GGU-GC- ACUUGG---- ---------| ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- --------|| ||| // LOCUS mt.T.limba 5213 bp RNA RNA 08-JAN-1999 DEFINITION Tanakia limbata.; . ACCESSION AB0167 6 KEYWORDS . SOURCE Tanakia limbata. ORGANISM Tanakia limbata. REFERENCE 1 (bases 1 to 701) AUTHORS Okazaki,M. TITLE Phylogenetic relationships of Acheilognathinae (Cyprinidae) JOURNAL Published Only in DataBase (1999) In press STANDARD No information REFERENCE 2 (bases 1 to 701) AUTHORS Okazaki,M. TITLE Direct Submission JOURNAL Submitted (01-AUG-1998) to the DDBJ/EMBL/GenBank databases. Masahiro Okazaki, University of Tokyo, Depertment of Biological Sciences, Graduate School of Science; Hongo 7-3-1, Bunkyo-ku, Tokyo 113, Japan (E-mail: ss87193@Hongo.ecc.u-tokyo.ac.jp, Tel: 03-3812-2111) STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: AB016706 BASE COUNT 217 a 181 c 164 g 139 t 4512 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --~~~~~~~~ 661 (~~~~)~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~|~~~~ ~~~~~~~(~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~)~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~~~~ ~~~~~)~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~(~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~)~~~ 1381 ~~~~~|~~~~ ~~~~~~~~~~ ~|~~~~~~~~ ~~|~~~~~~~ (~~~~~~)~~ ~~~~~~~~~| 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|~~~~~~~( ~~~~~)~~~~ ~~~~~~~~~~ 1501 ~~~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~( ~~~~~~~~~~ ~~~~~~~~)~ ~~~~~~~~~| 1561 ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~|~~~~ 1921 ~~~~~~~~~~ ~~~~~~(~~~ ~~~~~~~~~C -GGU-UA)-U ACGAGA|--- -GGC-CCC-- 1981 AGUUG-AUAA U-------au cgCGGC|GUA AAGGGUGGUC -A-agg---- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 ------g--- -cugcaaccu aauaaa--gc -----|GAAA UAGCCC-UCC ----GGCC(G 2341 UCAUA)CGCU UC-------c AGGc-gcuaG AAA------- ---cccaauu aCAC(-GAAG 2401 -)GU|A---- ----gcuuua g-----caau auuca----- ccu-gacuCC ACGAA-AGCU 2461 G-AGA---AA CAAACUGGG( AUUAGAUAC) CCCA-CUAU| -GCUU-AGC- CAUAAA-CCC 2521 A--GACA-UC |AA|------ ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- --a(auac)a g-uuA-UAUG 2701 U-C|--C|GC C-AGGG-UAC UACGAGC(-- -AUUA--)GC UUA--AAACC CAAAGGAC-C 2761 UG|ACGGUG- CCUCAGA-CC CCCCUAGA|G GAGCCUGU-U |CUAGA--AC CG(AUAACCC 2821 C--------- ----)CGUUA A-ACCUCACC ACUUCUGGUC ---------- ---------- 2881 (-------au cc-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGC CUA-UA|UA- 3121 |CC|-GC--C |G------UC GC-CA|G-CU UAC-|CCU(G --UGA)AGG- -----(aaa- 3181 gca)------ g-aGUAAGCA AAA-UGGG-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ----cacaa- 3781 ---------C CCAAAA-CGU C-AGGUCGAG G|UGUA|GCG CAC------- ---------G 3841 A-A-GU-GG- GA-AGA--AA -UGGGCUACA UU--UUCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--c ug---)---- ---------- ---------- CAG-AAcac- 4021 ---------- -----UACGG --AUGCG-UA ACA(------ ---------- ---------- 4081 ---------- ---------- UGAAA----) U-AG-U--GC -U--UGAAG- -GAGGAUUUA 4141 G-U--AGUAA A-AAGGAA(- gcaga-gu-- --)GUCCUUU U-GAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -CCC--GGCU 4261 CUGAGA-CG- CGUACACA-C -CGCCCGUCA C-UCU--CCC CU-------- ---------- 4321 ---------- ---------- ---------- ---------- ---------< -gucaaaau- 4381 gcaau-aaau uuaccuaauc acaaagcgcu gaca------ ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- ---------A GGGG-AGG-C AAGUCGUAAC AUGGUAAG-U GUA-CC(GGA 4621 -A)GGU-GC- ACUUGG---- ---------| ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- --------|| ||| // LOCUS mt.T.signi 5213 bp RNA RNA 08-JAN-1999 DEFINITION Tanakia signifer.; . ACCESSION AB0167 7 KEYWORDS . SOURCE Tanakia signifer. ORGANISM Tanakia signifer. REFERENCE 1 (bases 1 to 699) AUTHORS Okazaki,M. TITLE Phylogenetic relationships of Acheilognathinae (Cyprinidae) JOURNAL Published Only in DataBase (1999) In press STANDARD No information REFERENCE 2 (bases 1 to 699) AUTHORS Okazaki,M. TITLE Direct Submission JOURNAL Submitted (01-AUG-1998) to the DDBJ/EMBL/GenBank databases. Masahiro Okazaki, University of Tokyo, Depertment of Biological Sciences, Graduate School of Science; Hongo 7-3-1, Bunkyo-ku, Tokyo 113, Japan (E-mail: ss87193@Hongo.ecc.u-tokyo.ac.jp, Tel: 03-3812-2111) STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: AB016707 BASE COUNT 218 a 181 c 163 g 137 t 4514 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --~~~~~~~~ 661 (~~~~)~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~|~~~~ ~~~~~~~(~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~)~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~~~~ ~~~~~)~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~(~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~)~~~ 1381 ~~~~~|~~~~ ~~~~~~~~~~ ~|~~~~~~~~ ~~|~~~~~~~ (~~~~~~)~~ ~~~~~~~~~| 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|~~~~~~~( ~~~~~)~~~~ ~~~~~~~~~~ 1501 ~~~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~( ~~~~~~~~~~ ~~~~~~~~)~ ~~~~~~~~~| 1561 ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~|~~~~ 1921 ~~~~~~~~~~ ~~~~~~(~~~ ~~~~~~~~~C -GGU-UA)-U ACGAGA|--- -GGC-CCC-- 1981 AGUUG-AUUG U-------au cgCGGC|GUA AAGGGUGGUU -A-agg---- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 ------g--- -cugcaa-cc aauaaa--gc -----|CAAA UAGCCC-UCC ----GGCC(G 2341 UCAUA)CGCU UC-------c AGGc-gcuaG AGA------- ---cccaauu aCAC(-GAAG 2401 -)GU|A---- ----gcuuua a-----uuau auaca----- ccu-gacuCC ACGAA-AGCU 2461 G-AGG---AA CAAACUGGG( AUUAGAUAC) CCCA-CUAU| -GCUC-AGC- CAUAAA-CCC 2521 A--GACA-UU |AA|------ ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- --a(guac)a g-auA-UAUG 2701 U-C|--C|GC C-AGGG-UAC UACGAGC(-- -AUUA--)GC UUG--AAACC CAAAGGAC-C 2761 UG|ACGGUG- CCUCAGA-CC CCCCUAGA|G GAGCCUGU-U |CUAGA--AC CG(AUAACCC 2821 C--------- ----)CGUUA A-ACCUCACC ACUUCUGGAC ---------- ---------- 2881 (-------cu cc-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGC CUA-UA|UA- 3121 |CC|-GC--C |G------UC GC-CA|G-CU UAC-|CCU(G --UGA)AGG- -----(aaa- 3181 -ca)------ a-aGUAAGCA AAA-UGGG-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ----cacaa- 3781 ---------C CCAGAA-CGU C-AGGUCGAG G|UGUA|GCG CAC------- ---------G 3841 A-A-GU-GG- GA-AGA--AA -UGGGCUACA UU--UUCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--c ua---)---- ---------- ---------- CAG-AAcac- 4021 ---------- -----UACGA --AUACG-CA ACA(------ ---------- ---------- 4081 ---------- ---------- UGAAA----) U-AG-U--GC -U--UGAAG- -GAGGAUUUA 4141 G-U--AGUAA A-AAGGAA(- aaaga-gu-- --)GUCCUUU U-GAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -CCC--GGCU 4261 CUGAGA-CG- CGUACACA-C -CGCCCGUCA C-UCU--CCC CU-------- ---------- 4321 ---------- ---------- ---------- ---------- ---------< -gucgauau- 4381 gcaaa-aaac uuaucuaaac acaaagcgcu gaca------ ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- ---------A GGGG-AGG-C AAGUCGUAAC AUGGUAAG-U GUA-CC(GGA 4621 -A)GGU-GC- ACUUGG---- ---------| ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- --------|| ||| // LOCUS mt.T.tanag 5213 bp RNA RNA 08-JAN-1999 DEFINITION Tanakia tanago.; . ACCESSION AB0167 8 KEYWORDS . SOURCE Tanakia tanago. ORGANISM Tanakia tanago. REFERENCE 1 (bases 1 to 702) AUTHORS Okazaki,M. TITLE Phylogenetic relationships of Acheilognathinae (Cyprinidae) JOURNAL Published Only in DataBase (1999) In press STANDARD No information REFERENCE 2 (bases 1 to 702) AUTHORS Okazaki,M. TITLE Direct Submission JOURNAL Submitted (01-AUG-1998) to the DDBJ/EMBL/GenBank databases. Masahiro Okazaki, University of Tokyo, Depertment of Biological Sciences, Graduate School of Science; Hongo 7-3-1, Bunkyo-ku, Tokyo 113, Japan (E-mail: ss87193@Hongo.ecc.u-tokyo.ac.jp, Tel: 03-3812-2111) STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: AB016708 BASE COUNT 223 a 174 c 157 g 148 t 4511 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --~~~~~~~~ 661 (~~~~)~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~|~~~~ ~~~~~~~(~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~)~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~~~~ ~~~~~)~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~(~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~)~~~ 1381 ~~~~~|~~~~ ~~~~~~~~~~ ~|~~~~~~~~ ~~|~~~~~~~ (~~~~~~)~~ ~~~~~~~~~| 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|~~~~~~~( ~~~~~)~~~~ ~~~~~~~~~~ 1501 ~~~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~( ~~~~~~~~~~ ~~~~~~~~)~ ~~~~~~~~~| 1561 ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~|~~~~ 1921 ~~~~~~~~~~ ~~~~~~(~~~ ~~~~~~~~~C -GGU-UA)-U ACGAGA|--- -GGC-CCC-- 1981 AGUUG-AUAA U-------au caCGGC|GUA AAGGGUGGUU -A-agg---- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 ------a--- -uugaaauuu aauaaa--gu -----|CCAA AUAGCC-UUC ----GGCC(G 2341 UCAUA)CGCU UC-------u AGGu-guuaG AAA------- --cccaaucu gcAC(-GAAA 2401 -)GU|A---- ----gcuuua g-----cuau aucca----- ccu-gaccCC ACGAA-AGCU 2461 G-AGA---AA CAAACUGGG( AUUAGAUAC) CCCA-CUAU| -GCUC-AGC- CAUAAA-CCC 2521 A--GACA-UU |UA|------ ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- --a(guac)a a-ucA-CAUG 2701 U-C|--C|GC C-AGGG-UAC UACGAGC(-- -AUUA--)GC UUA--AAACC CAAAGGAC-C 2761 UG|ACGGUG- CCUCAGA-CC CCCCUAGA|G GAGCCUGU-U |CUAGA--AC CG(AUAACCC 2821 C--------- ----)CGUUA A-ACCUCACC ACUUCUGGUC ---------- ---------- 2881 (-------au uc-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGC CUA-UA|UA- 3121 |CC|-GC--C |G------UC GC-CA|G-CU UAC-|CCU(G --UGA)AGG- -----(uaa- 3181 uaa)------ a-aGUAAGCA AAA-UGGG-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ----uacaa- 3781 ---------C CCAGAA-CGU C-AGGUCGAG G|UGUA|GCG CAC------- ---------G 3841 A-A-GU-GG- GA-AGA--AA -UGGGCUACA UU--UUCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--c ua---)---- ---------- ---------- CAG-AAcac- 4021 ---------- -----UACGA --AUACG-CA ACA(------ ---------- ---------- 4081 ---------- ---------- UGAAA----) U-AG-U--GC -U--UGAAG- -GAGGAUUUA 4141 G-U--AGUAA A-AAGGAA(- aaaga-gu-- --)GUCCUUU U-GAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -CCC--GGCU 4261 CUGAGA-CG- CGUACACA-C -CGCCCGUCA C-UCU--CCC CU-------- ---------- 4321 ---------- ---------- ---------- ---------- ---------< -gucaaaau- 4381 gcaau-aagc auauuuaaua ccaaagcgcc gaca------ ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- ---------A GGGG-AGG-C AAGUCGUAAC AUGGUAAG-U GUA-CC(GGA 4621 -A)GGU-GC- ACUUGG---- ---------| ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- --------|| ||| // LOCUS mt.Z.platy 5213 bp RNA RNA 08-JAN-1999 DEFINITION Zacco platypus.; . ACCESSION AB0167 9 KEYWORDS . SOURCE Zacco platypus. ORGANISM Zacco platypus. REFERENCE 1 (bases 1 to 700) AUTHORS Okazaki,M. TITLE Phylogenetic relationships of Acheilognathinae (Cyprinidae) JOURNAL Published Only in DataBase (1999) In press STANDARD No information REFERENCE 2 (bases 1 to 700) AUTHORS Okazaki,M. TITLE Direct Submission JOURNAL Submitted (01-AUG-1998) to the DDBJ/EMBL/GenBank databases. Masahiro Okazaki, University of Tokyo, Depertment of Biological Sciences, Graduate School of Science; Hongo 7-3-1, Bunkyo-ku, Tokyo 113, Japan (E-mail: ss87193@Hongo.ecc.u-tokyo.ac.jp, Tel: 03-3812-2111) STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: AB016709 BASE COUNT 216 a 185 c 164 g 135 t 4513 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --~~~~~~~~ 661 (~~~~)~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~|~~~~ ~~~~~~~(~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~)~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~~~~ ~~~~~)~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~(~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~)~~~ 1381 ~~~~~|~~~~ ~~~~~~~~~~ ~|~~~~~~~~ ~~|~~~~~~~ (~~~~~~)~~ ~~~~~~~~~| 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|~~~~~~~( ~~~~~)~~~~ ~~~~~~~~~~ 1501 ~~~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~( ~~~~~~~~~~ ~~~~~~~~)~ ~~~~~~~~~| 1561 ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~|~~~~ 1921 ~~~~~~~~~~ ~~~~~~(~~~ ~~~~~~~~~C -GGU-UA)-U ACGAGA|--- -GGC-CCC-- 1981 AGUUG-AUAA C-------ac caCGGC|GUA AAGGGUGGUU -A-agg---- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 ---------- -gagcagcau gauaaa--gc -----|cgAA uggcCC-UUU ----GGCC(G 2341 UCAUA)CGCU UC-------u AGGu-guccG AAG------- ---cccaauc aCAC(-GAAA 2401 -)GU|A---- ----gcuuua a-----uaaa gccca----- ccu-gaccCC ACGAA-AGCU 2461 G-AGA---AA CAAACUGGG( AUUAGAUAC) CCCA-CUAU| -GCUC-AGC- CAUAAA-CCU 2521 A--GACA-UC |CA|------ ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- --a(cuac)a a-uuA-GACG 2701 U-C|--C|GC C-CGGG-UAC UACGAGC(-- -AUCA--)GC UUG--AAACC CAAAGGAC-C 2761 UG|ACGGUG- CCUUAGA-CC CCCCUAGA|G GAGCCUGU-U |CUAGA--AC CG(AUAACCC 2821 C--------- ----)CGUUA A-ACCUCACC ACUUCUAGCC ---------- ---------- 2881 (-------au cc-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGC CUA-UA|UA- 3121 |CC|-GC--C |G------UC GU-CA|G-CU UAC-|CCU(G --UGA)AGG- -----(uaa- 3181 uaa)------ a-aGUAAGCA AAA-UGGG-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ----cacaa- 3781 ---------C CCAGAA-CGU C-AGGUCGAG G|UGUA|GCG CAC------- ---------G 3841 A-A-GU-GG- GA-AGA--AA -UGGGCUACA UU--UUCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--u ua---)---- ---------- ---------- UAG-AAcac- 4021 ---------- -----UACGA --AUACG-CA ACA(------ ---------- ---------- 4081 ---------- ---------- UGAAA----) U-AG-U--GC -U--UGAAG- -GAGGAUUUA 4141 G-U--AGUAA A-AAGGAA(- acaga-gu-- --)GUCCUUU U-GAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -CCC--GGCU 4261 CUGAGG-CG- CGUACACA-C -CGCCCGUCA C-UCU--CCC CU-------- ---------- 4321 ---------- ---------- ---------- ---------- ---------< -gucaaaac- 4381 gcaau-gaag auuccuaacg ccaaagcacu gaca------ ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- ---------A GGGG-AGG-C AAGUCGUAAC AUGGUAAG-U GUA-CC(GGA 4621 -A)GGU-GC- ACUUGG---- ---------| ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- --------|| ||| // LOCUS (20)-Homal 5213 bp RNA RNA 25-JAN-1994 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: DIVIDER BASE COUNT 0 a 0 c 0 g 0 t 5213 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ----|..... .......... .......... 541 .......... .......... .......... .......... .......... .......... 601 .......... .......... .......... .......... .......... .......... 661 .......-.. .......... .......... ..-....... |......... ....-..... 721 .......-.. .....|.... ........-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- ------.... .......... 841 .......... .......... .......... .......... .......... .......... 901 .......... .......... .......... .......... .......... .......... 961 .....-..|. .......... .......... .|........ -......... .....-.... 1021 .......... ....---... ..-..---.. .......... .......... .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .......... .......... .......... .......... .......... 1201 .......... .......... .......... .......... .......... .......... 1261 .......... .......... .........- .......... ..----.... ........-- 1321 .......... .......... .......... .......... .......... .......... 1381 ......---. .......... .......-.. .......... .......... .......... 1441 .......... ........-. ..-....... .......... .......... ........-. 1501 ...|...-.. .......... .......... .......... .......... .....-...| 1561 .......... .......... .......... .......... .--....... .......... 1621 .......... .......... .......... .......... .......... .......... 1681 .......... .......... .......... .......... .......... .......... 1741 .......... .......... .......... .......... .......... .......... 1801 .......... .......... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .......... .......... 1921 .......... .......-.. .......... -.......-. .......... .......... 1981 .....-.... ...--..... .......... .......... -......... .......... 2041 .......... .....----. .......... .......... .....----- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- --------.. .......... .......... .......... 2221 .......... .......... .......... .......... ........|. .......-.. 2281 .......... -......... ......--.. .-........ .......... ---....... 2341 .......... ...-...... ....-..... .......... .......... .......... 2401 ....|..... .......... .......... .......... .......... .....-.... 2461 .....--... .......... .......... .......... .......... .......... 2521 .--....-.. |......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... .......... 2701 .-..-..... .......... .......... .......... .......... .......... 2761 ..|....... .......... ........|. ........-. |......... .......... 2821 .--------- ----...... .-........ .......... .......... .......... 2881 .....---.. ..-....... .......... .......... .......... .......... 2941 .......... .......... .......... .......... .......... .......... 3001 .......... .......... .......... .......... .......... .......... 3061 .......... .......... .......... .......... .--....... ...-.....- 3121 .......--. |......... .......-.. .......... .-........ .........- 3181 .......... .-........ .......... .......... .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .......... .......... .......... 3361 .......... .......... .......... .......... .....--... .......... 3421 .......... .......... .......... .......... .......... .......... 3481 .......... ........-- --........ .......... .......... .......... 3541 .......... .......... .......... .......... .......... .......... 3601 .......... .......... .......... .......... .......... .......... 3661 .......... .......... .......... .......... .......... .......... 3721 .......... .......... .......... .......... .....-.... .......... 3781 .......... .......... .......... ......|... ...------- -------... 3841 ...-..-... ..-....... .......... ..-....... ......-... ..--...... 3901 .......... .......... .......... .......... .......... .......... 3961 .......... .......... ...-...... .......... .......... .......... 4021 ......---. .......... .-........ .-........ .......... .......... 4081 .......... .......... ......-... .......... .........- .......... 4141 .-.-...... .......... .......... .......... .-........ .......... 4201 .......... .......... .......... .......... .......... .......... 4261 .......... .......... .......... .-........ ...-...... .......... 4321 .......... ......-... .........- .......... -......... .........- 4381 .....-.... .......... ........-- ....-..... .......... .......... 4441 .......... .......... .......... .......... .......... .......... 4501 .......... .......... ...--..... ........-- .......... .......... 4561 .......... .......... ........-. .......... ........-. ...-...... 4621 -.....-... .......... .......... .......... .......... .......... 4681 .......... .......... .......... .......... .......... .......... 4741 .......... .......... .......... .......... .......... .......... 4801 .......... .......... .......... .......... .......... .......... 4861 .......... .......... .......... .......... .......... .......... 4921 .......... .......... .......... .......... .......... .......... 4981 .......... .......... .......... .......... .......... .......... 5041 .......... .......... .......... .......... .......... .......... 5101 .......... .......... .......... .......... .......... .......... 5161 .......... .......... .......... .......... ........|| ||| // LOCUS mt.C.lacus 5213 bp RNA RNA 11-JAN-191 DEFINITION Mitochondrion Crossostoma lacustre. ACCESSION No information KEYWORDS No information. SOURCE Mitochondrion Crossostoma lacustre. ORGANISM Mitochondrion Crossostoma lacustre. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: M91245 DEFINITION Crossostoma lacustre mitochondrion, complete genome. SOURCE Mitochondrion Crossostoma lacustre (chromosome Mitochondrion Crossostoma lacustre) female DNA. ORGANISM Mitochondrion Crossostoma lacustre Eukaryota; Animalia; Chordata; Vertebrata; Osteichthyes; Actinopterygii; Cypriniformes; Cyprioidei; Homalopteridae. REFERENCE 1 (bases 1 to 16558) AUTHORS Tzeng,C.-S., Shen,S.-C. and Huang,P.-C. TITLE Mitochondrial DNA identity of Crossostoma (Homalopteridae, Pisces) from two river systems of the same geographical origin JOURNAL Bull. Inst. Zool. Acad. Sin. 29, 11-19 (1990) REFERENCE 2 (bases 1 to 16558) AUTHORS Tzeng,C.-S., Hui,C.-F., Shen,S.-C. and Huang,P.-C. TITLE The complete nucleotide sequence of the Crossostoma lacustre mitochondrial genome: Conservation and variations among vertebrates JOURNAL Nucleic Acids Res. 20, 4853-4858 (1992) FEATURES Location/Qualifiers D-loop 1..896 tRNA 898..967 /note="anticodon unspecified" rRNA 968..1918 /product="12S ribosomal RNA" /note="putative" tRNA 1919..1990 /note="anticodon location unspecified; amino acid = Val" rRNA 1991..3670 /product="16S ribosomal RNA" tRNA 3671..3744 /note="anticodon location unspecified; amino acid = Leu (UUC)" /note="putative" tRNA 4728..4801 /note="anticodon location unspecified; amino acid = Ile" /note="putative" tRNA complement(4799..4869) /note="anticodon location unspecified; amino acid = Gln" /note="putative" tRNA 4871..4939 /note="anticodon location unspecified; amino acid = Met" /note="putative" tRNA 5985..6055 /note="anticodon location unspecified; amino acid = Trp" /note="putative" tRNA complement(6058..6126) /note="anticodon location unspecified; amino acid = Ala" /note="putative" tRNA complement(6128..6200) /note="anticodon location unspecified; amino acid = Asn" /note="putative" tRNA complement(6231..6298) /note="anticodon location unspecified; amino acid = Cys" /note="putative" tRNA complement(6298..6365) /note="anticodon location unspecified; amino acid = Tyr" /note="putative" tRNA complement(7920..7988) /note="anticodon location unspecified; amino acid = Ser" /note="putative" tRNA 7992..8064 /note="anticodon location unspecified; amino acid = Asp" /note="putative" tRNA 8769..8844 /note="anticodon location unspecified; amino acid = Lys" /note="putative" tRNA 10472..10543 /note="anticodon location unspecified; amino acid = Gly" /note="putative" tRNA 10893..10962 /note="anticodon location unspecified; amino acid = Arg" /note="putative" tRNA 12634..12704 /note="anticodon location unspecified; amino acid = His" /note="putative" tRNA 12704..12773 /note="anticodon location unspecified; amino acid = Ser" /note="putative" tRNA 12774..12846 /note="anticodon location unspecified; amino acid = Leu" /note="putative" tRNA complement(15205..15271) /note="anticodon location unspecified; amino acid = Glu" /note="putative" tRNA 16419..16490 /note="anticodon location unspecified; amino acid = Thr" /note="putative" tRNA complement(16489..16558) /note="anticodon location unspecified; amino acid = Pro" /note="putative" CDS 3746..4720 /note="putative" /product="NADH dehydrogenase subunit 1" /codon_start=1 /translation="MLNTLLTHLINPLAYIVPVLLAVAFLTLLERKVLGYMQLRKGPN IVGPYGLLQPIADGVKLFIKEPIRPSTASPTLFLVTPMLALTLAMTLWAPMPMPHPII DLNLGVLFILALSSLAVYSILGSGWASNSKYALIGALRAVAQTISYEVSLGLILRSII IFWGGYTVQTFNTTQEALWLLLPACPLAAMWYISTLAETNRAPFDLTEGESELAPGFN VEYAGGPFALLFLAEYANILLMNTLSAILFLGASHMPAIPELTTINLMTKAALLSVVF LWVRASYPRFRYDQLMHLVWKNFLPLTLALVLWHTALPIAFAGLPPQL" CDS 4940..5986 /note="putative" /product="NADH dehydrogenase subunit 2" /codon_start=1 /translation="MNPYVLMILISSLGLGTTLTFASSHWLLAWMGLEINTLAILRLM AQQHHPRAVEATTKYFLTQATAAAMILFAATTNAWATGEWDINNLTHPLASSLTMMAL ALKVGLAPMHFWMPEVLQGLDLTMGLILSTWQKLAPFALITQMAPNTNPMLLTTLGLL STLIGGWGGLNQTQLRKILAYSSIAHMGWMIIILQYTPQLTLIALGLYIFMTSAAFLS LKMASATKMNTLTAAWSKSPVLVSTTALTLLSLGGLPPLTGFMPKWLILQELTKQDLP ATATIMALAALLSLYFYLRLSYAMALTIYPNTTNALTPWRTNTTQSTLALALMMIGAL GLLPLTPTIMALFF" CDS 6367..7917 /note="putative" /product="cytochrome c oxidase subunit I" /codon_start=1 /translation="MAITRWFFSTNHKDIGTLYLVFGAWAGMVGTALSLLIRAELNQP GALLGDDQIYNVIVTAHAFVMIFFMVMPILIGGFGNWLVPLMIGAPHMAFPRMNNMSF WLLPPSFLLLLASSGVEAGAGTGWTVYPPLAGNLAHAGASVDLTIFSLHLAGVSSILG AINFITTTINMKPPALSQYQTPLFVWAVLITAVLLLLSLPVLAAGITMLLTDRNLNTT FFDPAGGGDPILYQHLFWFFGHPEVYILILPGFGIISHVVAYYAGKKEPFGYMGMVWA MMAIGLLGFIVWAHHMFTVGMDVDTRAYFTSATMIIAIPTGVKVFSWLATLHGGTIKW DTPMLWALGFIFLFTVGGLTGIVLSNSSLDIVLHDTYYVVAHFHYVLSMGAVFAIMAG FVHWFPLFTGFSLHDTWTKIHFGVMFIGVNLTFFPQHFLGLAGMPRRYSDYPDAYTLW NTVSSIGSLISLVAVIIFLFILWEAFASKRQVMSVELTMTNVEWLHGCPPPYHTFEEP AFVQVRSN" CDS 8078..8768 /note="putative" /product="cytochrome c oxidase subunit II" /codon_start=1 /translation="MAHPTQLGFQDAASPVMEELLHFHDHALMIVFLISALVLYVIIT TVSTKLTNMYILDSQEIEIVWTVLPALILILIALPSLRILYLMDEINDPHLTIKAMGH QWYWSYEYTDYENLSFDSYMIPTQDLTPGQFRLLETDHRMVVPMESPIRILVSAEDVL HSWALPAMGVKMDAVPGRLNQTAFIASRPGVFYGQCSEICGANHSFMPIVVEAVPLSH FENWSTLMLKDA" CDS 8846..9013 /note="putative" /product="ATPase 8" /codon_start=1 /translation="MPQLNPAPWFTILVFSWMIFLAIIPTKVMGHTSPNDSSPLSTEK HKTESWDWPWQ" CDS 9004..9687 /note="putative" /product="ATPase 6" /codon_start=1 /translation="MAMSFFDQFASPSYLGIPLIAIAIALPWVLFPLPSLRWVNNRLI TIQGWLINRFTNQLMLPLNTGGHKWALLLASLMVFLITINMLGLLPYTFTPTTQLSLN MGLAIPLWLATVIIGLRNQPTVALGDLLPEGTPLPLIPVLIIIETISLFIRPLALGVR LTANLTAGHLLIQLIATAVFVLLPMMPTVAILTATVLFLLTLLEVAVAMIQAYVFVLL LSLYLQENV" CDS 9687..10472 /note="putative" /product="cytochrome c oxidase III" /codon_start=1 /translation="MAHQAHAYHMVDPSPWPLTGAIRALFLTSGLAIWFHFQSVTLLT LGLILLLLTMYQWWRDIIREGTFQGHHTPPVQKGLRYGMILFITSEVFFFLGFFWAFY HSSLAPTPELGGCWPPTGITPLDPFEVPLLNTAVLLASGVTVTWAHHSLMEGARKQAI QALALTIILGVYFTALQAMEYYEAPFTIADGVYGSTFFVATGFHGLHVIIGSSFLAVC LLRQIQYHFTSEHHFGFEAAAWYWHFVDVVWLFLYVSIYWWGS" CDS 10544..10894 /note="putative" /product="NADH dehydrogenase subunit 3" /codon_start=1 /translation="MNLVISILAITIILSSILAVVSFWLPQMNPDAEKLSPYECGFDP LGSARLPFSIRFFLVAILFLLFDLEIALLLALPWGDQLYSATGTFFWATAVLILLTLG LIYEWTQGGLEWAE" CDS 10963..11259 /note="putative" /product="NADH dehydrogenase subunit 4L" /codon_start=1 /translation="MTPVHFSFTSAFILGLMGLAFYRTHLLSALLCLEGMMLSLFIAL ALWALQFESTGFSTAPMLLLAFSACEASAGPGLLVATARTHGTDRLQNLNLLQC" CDS 11253..12635 /note="putative" /product="NADH dehydrogenase subunit 4" /codon_start=1 /translation="MLKVLIPTIMLFPTIWLTPPKWLWSTTTAHGLLIALISLTWLKW SSEVGSATSSLYLASDPLSTPLLGLTCWLLPLMVLASQNHITPEPIIRQRLYITLLAS LQTFLIMAFGATEIIMFYIMFEATLIPTLIIITRWGNQTERLNAGTYFLFYTLAGSLP LLVALLLLQQTNGTLSLLILQHSQPLALTSWGHKIWWAGCLIAFLVKMPLYGVHLWLP KAHVEAPVAGSMVLAAVLLKLGGYGMMRMMVVLDPLSKELAYPFIILALWGIIMTGSI CLRQTDLKSLIAYSSVSHMGLVAGGILIQTPWGFTGAIILMIAHGLVSSALFCLANTA YERTHSRTMILARGLQMIFPLTAVWWFIANLANLALPPLPNLMGELMIITTLFNWSPL TIILTGTGTLITAGYSLYLFLMSQRGPTPKHIVGLPPFHTREHLLMALHLIPVLLLMT KPEIMWGWCY" CDS 12847..14683 /note="putative" /product="NADH dehydrogenase subunit 5" /codon_start=1 /translation="MHPTPLILSSSLLLVIIILIYPVLTSLNPNPQNPKWATSHVKTA VSSAFLISLLPLAVFLDQGTETIVTNWHWMNTTMFDINISFKFDYYSLVFTPIALYVT WSILEFASWYMHADPYVNRFFKYLLTFLIAMITLVTANNMFQLFIGWEGVGIMSFLLI GWWYGRADANTAALQAWIYNRVGDIGLIMSMAWLAMNLNSWEIQQIFFLSKDFDMTLP LMGLILAATGKSAQFGLHPWLPAAMEGPTPVSALLHSSTMVVAGIFLLIRLHAIMENN QLALTTCLCLGALTSLFTAACALTQNDIKKIVAFSTSSQLGLMMVTIGLNQPQLAFLH ICTHAFFKAMLFLCSGSIIHSLNDEQDIRKMGGLQNLLPFTSTCLTIGSLALTGTPFL AGFFSKDAIIEAMNTSYLNAWALTLTLIATSFTAVYSFRVVFFVSMGTPRFLPLSPIN ENNPAVINPIKRLAWGSIIAGLIITSNLLPSKSPVMTMPPTLKMAALMVTAIGLFTAM ELATLTSKQYKTNPITQTHHFSNMLGFFPSVVHRLMKKLNLTLGQLAATQMVDQTWFE AAGPKGASSTQIKMAKITSDTQRGMIKTYLTIFLLTTALATRLATI" CDS complement(14682..15203) /note="putative" /product="NADH dehydrogenase subunit 6" /codon_start=1 /translation="MTYLVSLLLMALIVGLIAVASNPAPYFAALGLVVAAGVGCGVLV SHGGSFLSLVLFLIYLGGMLVVFAYSAALAAEPFPEAWGDRSVVGYVMIYLLGVGLMV GVFWEGWYEGSWVVIDGLKEFSVLRGDTSGVAEMYSYGGGMLVICAWVLLLTLFVVLE LTRGLSRGTIRAV" CDS 15278..16418 /note="putative" /product="cytochrome b" /codon_start=1 /translation="MASLRKTHPLIKIANDALVDLPAPSNISVWWNFGSLLGLCLITQ ILTGLFLAMHYTSDISTAFSSVAHICRDVNYGWLIRNIHANGASFFFICLYLHIARGL YYGSYLYKETWNIGVVLFLLVMMTAFVGYVLPWGQMSFWGATVITNLLSAVPYVGDML VQWIWGGFSVDNATLTRFFAFHFLFPFIVAAVTILHLLFLHETGSNNPAGLNSDADKI SFHPYFSYKDLLGFVVMLLGLTTLALFSPNLLGDPENFTPANPLVTPPHIKPEWYFLF AYAILRSIPNKLGGVLALLFSILVLMVVPVLHTSKQRGLTFRPATQFLFWTLVADMII LTWIGGMPVEHPYIIIGQIASILYFALFLILIPLAGWLENKALEWV" BASE COUNT 292 a 245 c 222 g 192 t 4262 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ----|----- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --caaAGGCU 661 (UGG-)U-CC U|GACUU-UA CUA-UCAGCC -G-UAGC-AC |AA-CU--UA -CAC-A-UGC 721 -AAGu----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------cuc c)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------|- gCAGCCCCGU GAGGA---UG C|CCU-Uaa- --uc-cc--- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- --(u-gcccg -----)---- 1261 ---------- ---------- --gg--ga-- --cGAGGAGC |--------- GGGCAUCA-- 1321 -GGCUCAA-- -----(uuau ---------- ---------- ---------- ------)--- 1381 ---UU|---A GCCCA--AGA C|GCCUU-GC --|------- (-cac--)-- -------GC| 1441 CACA------ ---------- ---------- -|-CCCC--( CAAG-)--GG AAcu---C-A 1501 GCA|GUG-AU AAAAAUUAAG C-CAUGAGC( ---------- ---ACUAA)G CUUGA-CUU| 1561 A|-GUUA-G- UG-UUA---a ga-------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- GGGCC|-GGU 1921 -AAA-A---C UCGU-G(-CC AGCCACC-GC -GGU-UA)-U ACGAGA|--- -GGC-CCU-- 1981 AGUUG-AUAG G--------- ugCGGC|GUA AAGGGUGGUU -A-agg---- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 ------a--- --gagcaaga auuaaa--gc -----|CAAG ggaccu-cuu ----GGCC(G 2341 UCAUA)CGCU UC-------u gaguauc-cA AAG------- -----ccaaa -uAC(-GAAA 2401 -)GU|a---- ----gcuuua a----uaaaa ccca------ ccu-gaccCC ACGAA-AGCU 2461 G-AGA---AA CAAACUGGG( AUUAGAUAC) CCCA-CUAU| -GCUC-AGC- UAUAAA-CCU 2521 A--GACG-UU |UA|------ ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- --a(ucac)a a--cA-AACG 2701 U-C|--C|GC C-AGGG-UAC UACGAGC(-- -GUCA--)GC UUA--AAACC CAAAGGAC-U 2761 UG|GCGGUG- CCUUAGA-CC CCCCUAGA|G GAGCCUGU-U |CUAGA--AC CG(AUAACCC 2821 C--------- ----)CGUUA A-ACCUCACC ACUUCUAGUC ---------- ---------- 2881 (-------au cc-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---CGC CUA-UA|UA- 3121 |CC|-GC--C |G------UC GU-CA|G-CU UAC-|CCU(G --UGA)AGG- -----(cuc- 3181 aa-)------ U-AGUAAGCA AAG-UGGG-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ----cacaa- 3781 ---------C CCAAAA-CGU C-AGGUCGAG G|UGUA|GCG UAC------- ---------G 3841 A-A-GU-GG- GA-AGA--GA -UGGGCUACA UU--UUCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--u aa---)---- ---------- ---------- UAG-AAuaa- 4021 ---------- -----GACGA --AUAGC-AU C-A(------ ---------- ---------- 4081 ---------- ---------- UGAAAa-cu) U-AA-U--GC -U--UGAAG- -GAGGAUUUA 4141 G-U--AGUAA A-AAGGAA(- auaga-gu-- --)GUCCUUU U-GAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -CCC--GGCU 4261 CUGAGG-CG- CGUACACA-C -CGCCCGUCA C-UCU--CCC CU-------- ---------- 4321 ---------- ---------- ---------- ---------- ---------< -gu--aaua- 4381 gcaau-caau guaaauaaca acaaagcacc aaca------ ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- ---------A GGGG-AGG-C AAGUCGUAAC AUGGUAAG-U GUA-CC(GGA 4621 -A)GGU-GC- ACUUGGAUCA AACC-----| ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- --------|| ||| // LOCUS (18)-Gymno 5213 bp RNA RNA 25-JAN-1994 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: DIVIDER BASE COUNT 0 a 0 c 0 g 0 t 5213 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ----|..... .......... .......... 541 .......... .......... .......... .......... .......... .......... 601 .......... .......... .......... .......... .......... .......... 661 .......-.. .......... .......... ..-....... |......... ....-..... 721 .......-.. .....|.... ........-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- ------.... .......... 841 .......... .......... .......... .......... .......... .......... 901 .......... .......... .......... .......... .......... .......... 961 .....-..|. .......... .......... .|........ -......... .....-.... 1021 .......... ....---... ..-..---.. .......... .......... .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .......... .......... .......... .......... .......... 1201 .......... .......... .......... .......... .......... .......... 1261 .......... .......... .........- .......... ..----.... ........-- 1321 .......... .......... .......... .......... .......... .......... 1381 ......---. .......... .......-.. .......... .......... .......... 1441 .......... ........-. ..-....... .......... .......... ........-. 1501 ...|...-.. .......... .......... .......... .......... .....-...| 1561 .......... .......... .......... .......... .--....... .......... 1621 .......... .......... .......... .......... .......... .......... 1681 .......... .......... .......... .......... .......... .......... 1741 .......... .......... .......... .......... .......... .......... 1801 .......... .......... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .......... .......... 1921 .......... .......-.. .......... -.......-. .......... .......... 1981 .....-.... ...--..... .......... .......... -......... .......... 2041 .......... .....----. .......... .......... .....----- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- --------.. .......... .......... .......... 2221 .......... .......... .......... .......... ........|. .......-.. 2281 .......... -......... ......--.. .-........ .......... ---....... 2341 .......... ...-...... ....-..... .......... .......... .......... 2401 ....|..... .......... .......... .......... .......... .....-.... 2461 .....--... .......... .......... .......... .......... .......... 2521 .--....-.. |......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... .......... 2701 .-..-..... .......... .......... .......... .......... .......... 2761 ..|....... .......... ........|. ........-. |......... .......... 2821 .--------- ----...... .-........ .......... .......... .......... 2881 .....---.. ..-....... .......... .......... .......... .......... 2941 .......... .......... .......... .......... .......... .......... 3001 .......... .......... .......... .......... .......... .......... 3061 .......... .......... .......... .......... .--....... ...-.....- 3121 .......--. |......... .......-.. .......... .-........ .........- 3181 .......... .-........ .......... .......... .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .......... .......... .......... 3361 .......... .......... .......... .......... .....--... .......... 3421 .......... .......... .......... .......... .......... .......... 3481 .......... ........-- --........ .......... .......... .......... 3541 .......... .......... .......... .......... .......... .......... 3601 .......... .......... .......... .......... .......... .......... 3661 .......... .......... .......... .......... .......... .......... 3721 .......... .......... .......... .......... .....-.... .......... 3781 .......... .......... .......... ......|... ...------- -------... 3841 ...-..-... ..-....... .......... ..-....... ......-... ..--...... 3901 .......... .......... .......... .......... .......... .......... 3961 .......... .......... ...-...... .......... .......... .......... 4021 ......---. .......... .-........ .-........ .......... .......... 4081 .......... .......... ......-... .......... .........- .......... 4141 .-.-...... .......... .......... .......... .-........ .......... 4201 .......... .......... .......... .......... .......... .......... 4261 .......... .......... .......... .-........ ...-...... .......... 4321 .......... ......-... .........- .......... -......... .........- 4381 .....-.... .......... ........-- ....-..... .......... .......... 4441 .......... .......... .......... .......... .......... .......... 4501 .......... .......... ...--..... ........-- .......... .......... 4561 .......... .......... ........-. .......... ........-. ...-...... 4621 -.....-... .......... .......... .......... .......... .......... 4681 .......... .......... .......... .......... .......... .......... 4741 .......... .......... .......... .......... .......... .......... 4801 .......... .......... .......... .......... .......... .......... 4861 .......... .......... .......... .......... .......... .......... 4921 .......... .......... .......... .......... .......... .......... 4981 .......... .......... .......... .......... .......... .......... 5041 .......... .......... .......... .......... .......... .......... 5101 .......... .......... .......... .......... .......... .......... 5161 .......... .......... .......... .......... ........|| ||| // LOCUS mt.Dist.sp 5213 bp RNA RNA 28-MAY-1998 DEFINITION Mitochondrion Distocyclus sp.; . ACCESSION U15270 KEYWORDS . SOURCE Mitochondrion Distocyclus sp. ORGANISM Mitochondrion Distocyclus sp. REFERENCE 1 (bases 1 to 318) AUTHORS Meyer,A. Alves-Gomes,J.A., Orti,G., Haygood,M., Heiligenberg,W. and TITLE and mitochondrial sequence data Phylogenetic analysis of the South American electric fishes (order Gymnotiformes) and the evolution of their electrogenic system: a synthesis based on morphology, electrophysiology, JOURNAL Mol. Biol. Evol. 12, 298-318 (1995) STANDARD No information REFERENCE 2 (bases 1 to 318) AUTHORS Alves-Gomes,J.A. TITLE Direct Submission JOURNAL Submitted (28-SEP-1994) Jose A. Alves-Gomes, Marine Biology Research Division, Scripps Institution of Oceanography, 8604 La Jolla Shores Dr., La Jolla, CA 92093, USA STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: U15270 BASE COUNT 95 a 86 c 71 g 66 t 4895 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --~~~~~~~~ 661 (~~~-)~-~~ ~|~~~~~-~~ ~~~-~~~~~~ -~-~~~~-~~ |~~-~~--~~ -~~~-~-~~~ 721 -~~~~----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------~~~ ~)~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~|- ~~~~~~~~~~ ~~~~~---~~ ~|~~~-~~~- --~~-~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~~~~ -----)~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~-- 1321 -~~~~~~~~~ ~~~~~(~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~)~~~ 1381 ~~~~~|---~ ~~~~~--~~~ ~|~~~~~-~~ --|------- (-~~~--)-- -------~~| 1441 ~~~~~~~~~~ ~~~~~~~~-~ ~~~~~~~~~~ ~|-~~~~--( ~~~~-)--~~ ~~~~---~-~ 1501 ~~~|~~~-~~ ~~~~~~~~~~ ~-~~~~~~~( ---------- ----~~~~)~ ~~~~~-~~~| 1561 ~|-~~~~-~- ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~|-~~~ 1921 -~~~-~---~ ~~~~-~(-~~ ~~~~~~~-~~ -~~~-~~)-~ ~~~~~~|--- -~~~-~~~-- 1981 ~~~~~-~~~~ ~-------~~ ~~~~~~|~~~ ~~~~~~~~~~ -~-~~~~~~~ ~~~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~|~~~~ ~~~~~~-~~~ ----~~~~(~ 2341 ~~~~~)~~~~ ~~-------~ ~~~~~~~~~~ ~~~------- ---~~~~~~~ -~~~(-~~~~ 2401 -)~~|~---- ----~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~( ~~~~~~~~~) ~~~~-~~~~| -~~~~-~~~- ~~~~~~-~~~ 2521 ~--~~~~-~~ |~~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~(~~~~)~ ~--~~~~~~~ 2701 U-U|--C|GC C-CGAG-UAC UACGAGC(-- -ACCA--)GC UUA--AAACU CAAAGGAC-U 2761 UG|GCGGUG- CUCCAGA-CC CCCCUAGA|G GAGCCUGU-U |CUAGA--AC CG(AUAAUCC 2821 C--------- ----)CGUUC A-ACCUCACC ACCUCUUGUU ---------- ---------- 2881 (-------uu ua-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---CGC CUA-UA|UA- 3121 |CC|-GC--C |G------UC GU-CA|G-CU UAC-|CCU(G --CAA)AGG- -----(-uc- 3181 aaa)------ c-aGUAAGCA AAA-CGGG-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ----cauag- 3781 ---------C CCAAAA-CGU C-AGGCCGAG G|UGUA|GCG UAC------- ---------G 3841 A-G-AU-GG- GA-AGA--AA -UGGGCUACA UU--UUCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--c aa---)---- ---------- ---------- UAG-AAuau- 4021 ---------- ---uuuaCAA --ACGGC-GC C-C(------ ---------- ---------- 4081 ---------- ---------- UGAAAC-u-) A-GG-C--GC -C--CGAAG- -guggaUUUA 4141 G-u--AGUAA A-AAGCAA(- a~~~~-~~-- --)~~~~~~~ ~-~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~--~~~~ 4261 ~~~~~~-~~- ~~~~~~~~-~ -~~~~~~~~~ ~-~~~--~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ -~~~~~~~~< ~~~~~~~~~- 4381 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4501 ~~~~~~~~~~ ~~~~~~~~~~ ~~>~~~~~~~ ~~~~~~~~-- ~~~~~~~~~~ ~~~~~~~~~~ 4561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~-~ ~~~~~~~~~~ ~~~~~~~~-~ ~~~-~~(~~~ 4621 -~)-~~-~~- ~~~~~~~~~~ ~~~------| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS mt.Eige.sp 5213 bp RNA RNA 28-MAY-1998 DEFINITION Mitochondrion Eigenmannia sp.; . ACCESSION U15269 KEYWORDS . SOURCE Mitochondrion Eigenmannia sp. ORGANISM Mitochondrion Eigenmannia sp. REFERENCE 1 (bases 1 to 318) AUTHORS Meyer,A. Alves-Gomes,J.A., Orti,G., Haygood,M., Heiligenberg,W. and TITLE and mitochondrial sequence data Phylogenetic analysis of the South American electric fishes (order Gymnotiformes) and the evolution of their electrogenic system: a synthesis based on morphology, electrophysiology, JOURNAL Mol. Biol. Evol. 12, 298-318 (1995) STANDARD No information REFERENCE 2 (bases 1 to 318) AUTHORS Alves-Gomes,J.A. TITLE Direct Submission JOURNAL Submitted (28-SEP-1994) Jose A. Alves-Gomes, Marine Biology Research Division, Scripps Institution of Oceanography, 8604 La Jolla Shores Dr., La Jolla, CA 92093, USA STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: U15269 BASE COUNT 95 a 92 c 71 g 60 t 4895 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --~~~~~~~~ 661 (~~~-)~-~~ ~|~~~~~-~~ ~~~-~~~~~~ -~-~~~~-~~ |~~-~~--~~ -~~~-~-~~~ 721 -~~~~----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------~~~ ~)~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~|- ~~~~~~~~~~ ~~~~~---~~ ~|~~~-~~~- --~~-~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~~~~ -----)~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~-- 1321 -~~~~~~~~~ ~~~~~(~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~)~~~ 1381 ~~~~~|---~ ~~~~~--~~~ ~|~~~~~-~~ --|------- (-~~~--)-- -------~~| 1441 ~~~~~~~~~~ ~~~~~~~~-~ ~~~~~~~~~~ ~|-~~~~--( ~~~~-)--~~ ~~~~---~-~ 1501 ~~~|~~~-~~ ~~~~~~~~~~ ~-~~~~~~~( ---------- ----~~~~)~ ~~~~~-~~~| 1561 ~|-~~~~-~- ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~|-~~~ 1921 -~~~-~---~ ~~~~-~(-~~ ~~~~~~~-~~ -~~~-~~)-~ ~~~~~~|--- -~~~-~~~-- 1981 ~~~~~-~~~~ ~-------~~ ~~~~~~|~~~ ~~~~~~~~~~ -~-~~~~~~~ ~~~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~|~~~~ ~~~~~~-~~~ ----~~~~(~ 2341 ~~~~~)~~~~ ~~-------~ ~~~~~~~~~~ ~~~------- ---~~~~~~~ -~~~(-~~~~ 2401 -)~~|~---- ----~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~( ~~~~~~~~~) ~~~~-~~~~| -~~~~-~~~- ~~~~~~-~~~ 2521 ~--~~~~-~~ |~~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~(~~~~)~ ~--~~~~~~~ 2701 U-U|--C|GC C-CGAG-UAC UACGAGC(-- -ACCA--)GC UUA--AAACU CAAAGGAC-U 2761 UG|GCGGUG- CUCCAGA-CC CCCCUAGA|G GAGCCUGU-U |CUAGA--AC CG(AUAACCC 2821 C--------- ----)CGUUC A-ACCUCACC ACCUCUUGUU ---------- ---------- 2881 (-------ca ua-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---CGC CUA-UA|UA- 3121 |CC|-GC--C |G------UC GU-CA|G-CU UAC-|CCU(G --CAA)AGG- -----(cca- 3181 -aa)------ c-aGUAAGCA AAA-CGGG-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ----cacag- 3781 ---------C CCAAAA-CGU C-AGGCCGAG G|UGUA|GCG UAC------- ---------G 3841 A-G-AU-GG- GA-AGA--AA -UGGGCUACA UU--UUCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--c aa---)---- ---------- ---------- UAG-AAuau- 4021 ---------- ---ucuaCAG --ACGGC-GC C-C(------ ---------- ---------- 4081 ---------- ---------- UGAAAU-c-) A-UG-C--GC -C--CGAAG- -guggaUUUA 4141 G-c--AGUAA A-AAGCAA(- a~~~~-~~-- --)~~~~~~~ ~-~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~--~~~~ 4261 ~~~~~~-~~- ~~~~~~~~-~ -~~~~~~~~~ ~-~~~--~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ -~~~~~~~~< ~~~~~~~~~- 4381 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4501 ~~~~~~~~~~ ~~~~~~~~~~ ~~>~~~~~~~ ~~~~~~~~-- ~~~~~~~~~~ ~~~~~~~~~~ 4561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~-~ ~~~~~~~~~~ ~~~~~~~~-~ ~~~-~~(~~~ 4621 -~)-~~-~~- ~~~~~~~~~~ ~~~------| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS mt.Rhab.sp 5213 bp RNA RNA 28-MAY-1998 DEFINITION Mitochondrion Rhabdolichops sp.; . ACCESSION U15258 KEYWORDS . SOURCE Mitochondrion Rhabdolichops sp. ORGANISM Mitochondrion Rhabdolichops sp. REFERENCE 1 (bases 1 to 318) AUTHORS Alves-Gomes,J.A., Orti,G., Haygood,M., Heiligenberg,W. and Meyer,A. TITLE system: a synthesis based on morphology, electrophysiology, and mitochondrial sequence data Phylogenetic analysis of the South American electric fishes (order Gymnotiformes) and the evolution of their electrogenic JOURNAL Mol. Biol. Evol. 12, 298-318 (1995) STANDARD No information REFERENCE 2 (bases 1 to 318) AUTHORS Alves-Gomes,J.A. TITLE Direct Submission JOURNAL Submitted (28-SEP-1994) Jose A. Alves-Gomes, Marine Biology Research Division, Scripps Institution of Oceanography, 8604 La Jolla Shores Dr., La Jolla, CA 92093, USA STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: U15258 BASE COUNT 93 a 91 c 71 g 63 t 4895 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --~~~~~~~~ 661 (~~~-)~-~~ ~|~~~~~-~~ ~~~-~~~~~~ -~-~~~~-~~ |~~-~~--~~ -~~~-~-~~~ 721 -~~~~----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------~~~ ~)~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~|- ~~~~~~~~~~ ~~~~~---~~ ~|~~~-~~~- --~~-~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~~~~ -----)~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~-- 1321 -~~~~~~~~~ ~~~~~(~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~)~~~ 1381 ~~~~~|---~ ~~~~~--~~~ ~|~~~~~-~~ --|------- (-~~~--)-- -------~~| 1441 ~~~~~~~~~~ ~~~~~~~~-~ ~~~~~~~~~~ ~|-~~~~--( ~~~~-)--~~ ~~~~---~-~ 1501 ~~~|~~~-~~ ~~~~~~~~~~ ~-~~~~~~~( ---------- ----~~~~)~ ~~~~~-~~~| 1561 ~|-~~~~-~- ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~|-~~~ 1921 -~~~-~---~ ~~~~-~(-~~ ~~~~~~~-~~ -~~~-~~)-~ ~~~~~~|--- -~~~-~~~-- 1981 ~~~~~-~~~~ ~-------~~ ~~~~~~|~~~ ~~~~~~~~~~ -~-~~~~~~~ ~~~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~|~~~~ ~~~~~~-~~~ ----~~~~(~ 2341 ~~~~~)~~~~ ~~-------~ ~~~~~~~~~~ ~~~------- ---~~~~~~~ -~~~(-~~~~ 2401 -)~~|~---- ----~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~( ~~~~~~~~~) ~~~~-~~~~| -~~~~-~~~- ~~~~~~-~~~ 2521 ~--~~~~-~~ |~~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~(~~~~)~ ~--~~~~~~~ 2701 U-C|--C|GC C-CGAG-UAC UACGAGC(-- -ACUA--)GC UUA--AAACU CAAAGGAC-U 2761 UG|GCGGUG- CUCCAGA-CC CACCUAGA|G GAGCCUGU-U |CUAGA--AC CG(AUAAUCC 2821 C--------- ----)CGUUU A-ACCUCACC AUCCCUUGCU ---------- ---------- 2881 (--uu---uu cc-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C----GC CUA-UA|UA- 3121 |CC|-GC--C |G------UC GC-CA|G-CU UAC-|CCU(G --CAA)AGG- -----(c-c- 3181 uaa)------ u-aGUAAGCA AAA-CGGG-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ----cauag- 3781 ---------C CCAAAA-CGU C-AGGCCGAG G|UGUA|GCG CAC------- ---------G 3841 A-G-AU-GG- GA-AGA--AA -UGGGCUACA UU--UUCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--u aa---)---- ---------- ---------- UAG-AAuau- 4021 ---------- ---ccuaCAA --ACGGC-GC C-C(------ ---------- ---------- 4081 ---------- ---------- UGAAAC---) G-CG-C--GC -C--CGAAG- -guggaUUUA 4141 G-c--AGUAA A-AAGCAA(- a~~~~-~~-- --)~~~~~~~ ~-~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~--~~~~ 4261 ~~~~~~-~~- ~~~~~~~~-~ -~~~~~~~~~ ~-~~~--~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ -~~~~~~~~< ~~~~~~~~~- 4381 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4501 ~~~~~~~~~~ ~~~~~~~~~~ ~~>~~~~~~~ ~~~~~~~~-- ~~~~~~~~~~ ~~~~~~~~~~ 4561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~-~ ~~~~~~~~~~ ~~~~~~~~-~ ~~~-~~(~~~ 4621 -~)-~~-~~- ~~~~~~~~~~ ~~~------| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS mt.E.elect 5213 bp RNA RNA 28-MAY-1998 DEFINITION Mitochondrion Electrophorus electricus.; . ACCESSION U15268 KEYWORDS . SOURCE Mitochondrion Electrophorus electricus. ORGANISM Mitochondrion Electrophorus electricus. REFERENCE 1 (bases 1 to 314) AUTHORS Meyer,A. Alves-Gomes,J.A., Orti,G., Haygood,M., Heiligenberg,W. and TITLE and mitochondrial sequence data Phylogenetic analysis of the South American electric fishes (order Gymnotiformes) and the evolution of their electrogenic system: a synthesis based on morphology, electrophysiology, JOURNAL Mol. Biol. Evol. 12, 298-318 (1995) STANDARD No information REFERENCE 2 (bases 1 to 314) AUTHORS Alves-Gomes,J.A. TITLE Direct Submission JOURNAL Submitted (28-SEP-1994) Jose A. Alves-Gomes, Marine Biology Research Division, Scripps Institution of Oceanography, 8604 La Jolla Shores Dr., La Jolla, CA 92093, USA STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: U15268 BASE COUNT 100 a 80 c 66 g 68 t 4899 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --~~~~~~~~ 661 (~~~-)~-~~ ~|~~~~~-~~ ~~~-~~~~~~ -~-~~~~-~~ |~~-~~--~~ -~~~-~-~~~ 721 -~~~~----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------~~~ ~)~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~|- ~~~~~~~~~~ ~~~~~---~~ ~|~~~-~~~- --~~-~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~~~~ -----)~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~-- 1321 -~~~~~~~~~ ~~~~~(~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~)~~~ 1381 ~~~~~|---~ ~~~~~--~~~ ~|~~~~~-~~ --|------- (-~~~--)-- -------~~| 1441 ~~~~~~~~~~ ~~~~~~~~-~ ~~~~~~~~~~ ~|-~~~~--( ~~~~-)--~~ ~~~~---~-~ 1501 ~~~|~~~-~~ ~~~~~~~~~~ ~-~~~~~~~( ---------- ----~~~~)~ ~~~~~-~~~| 1561 ~|-~~~~-~- ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~|-~~~ 1921 -~~~-~---~ ~~~~-~(-~~ ~~~~~~~-~~ -~~~-~~)-~ ~~~~~~|--- -~~~-~~~-- 1981 ~~~~~-~~~~ ~-------~~ ~~~~~~|~~~ ~~~~~~~~~~ -~-~~~~~~~ ~~~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~|~~~~ ~~~~~~-~~~ ----~~~~(~ 2341 ~~~~~)~~~~ ~~-------~ ~~~~~~~~~~ ~~~------- ---~~~~~~~ -~~~(-~~~~ 2401 -)~~|~---- ----~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~( ~~~~~~~~~) ~~~~-~~~~| -~~~~-~~~- ~~~~~~-~~~ 2521 ~--~~~~-~~ |~~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~(~~~~)~ ~--~~~~~~~ 2701 U-C|--C|GC C-CGGG-UAC UACAAGC(-- -A-CA--)GC UUG--AAACU CAAAGGAC-U 2761 UG|GCGGUC- UCUCAGA-UC CAUCUAGA|G GAGCCUGU-U |CUAGA--AC CG(AUACCCC 2821 C--------- ----)CGUUA A-ACCUCACC ACUCCUUGCU ---------- ---------- 2881 (-------uc cc-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGC CUA-UA|UA- 3121 |CC|-GC--C |G------UC GU-CA|G-CU UAC-|CCU(G --UGA)AGG- -----(-uu- 3181 aaa)------ a-aGUGAGCA AAA-AGAG-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ----uacac- 3781 ---------C CCAAAA-CGU C-AGGCCAAG G|UGUA|GCA UAU------- ---------G 3841 G-A-GC-GG- -AUUGA--AA -UGGGCUACA UU--UUCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--u aa---)---- ---------- ---------- CAG-AAuau- 4021 ---------- -----uaCGA --ACCAC-AC A-A(------ ---------- ---------- 4081 ---------- ---------- UGAAAC---) A-UG-U--GU -A--UGAAG- -gcggaUUUA 4141 G-u--AGUAA A-AAGCAA(- a~~~~-~~-- --)~~~~~~~ ~-~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~--~~~~ 4261 ~~~~~~-~~- ~~~~~~~~-~ -~~~~~~~~~ ~-~~~--~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ -~~~~~~~~< ~~~~~~~~~- 4381 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4501 ~~~~~~~~~~ ~~~~~~~~~~ ~~>~~~~~~~ ~~~~~~~~-- ~~~~~~~~~~ ~~~~~~~~~~ 4561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~-~ ~~~~~~~~~~ ~~~~~~~~-~ ~~~-~~(~~~ 4621 -~)-~~-~~- ~~~~~~~~~~ ~~~------| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS mt.Gym.sp1 5213 bp RNA RNA 28-MAY-1998 DEFINITION Mitochondrion Gymnotus sp.; . ACCESSION U15266 KEYWORDS . SOURCE Mitochondrion Gymnotus sp. ORGANISM Mitochondrion Gymnotus sp. REFERENCE 1 (bases 1 to 316) AUTHORS Meyer,A. Alves-Gomes,J.A., Orti,G., Haygood,M., Heiligenberg,W. and TITLE and mitochondrial sequence data Phylogenetic analysis of the South American electric fishes (order Gymnotiformes) and the evolution of their electrogenic system: a synthesis based on morphology, electrophysiology, JOURNAL Mol. Biol. Evol. 12, 298-318 (1995) STANDARD No information REFERENCE 2 (bases 1 to 316) AUTHORS Alves-Gomes,J.A. TITLE Direct Submission JOURNAL Submitted (28-SEP-1994) Jose A. Alves-Gomes, Marine Biology Research Division, Scripps Institution of Oceanography, 8604 La Jolla Shores Dr., La Jolla, CA 92093, USA STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: U15266 BASE COUNT 103 a 72 c 68 g 73 t 4897 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --~~~~~~~~ 661 (~~~-)~-~~ ~|~~~~~-~~ ~~~-~~~~~~ -~-~~~~-~~ |~~-~~--~~ -~~~-~-~~~ 721 -~~~~----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------~~~ ~)~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~|- ~~~~~~~~~~ ~~~~~---~~ ~|~~~-~~~- --~~-~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~~~~ -----)~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~-- 1321 -~~~~~~~~~ ~~~~~(~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~)~~~ 1381 ~~~~~|---~ ~~~~~--~~~ ~|~~~~~-~~ --|------- (-~~~--)-- -------~~| 1441 ~~~~~~~~~~ ~~~~~~~~-~ ~~~~~~~~~~ ~|-~~~~--( ~~~~-)--~~ ~~~~---~-~ 1501 ~~~|~~~-~~ ~~~~~~~~~~ ~-~~~~~~~( ---------- ----~~~~)~ ~~~~~-~~~| 1561 ~|-~~~~-~- ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~|-~~~ 1921 -~~~-~---~ ~~~~-~(-~~ ~~~~~~~-~~ -~~~-~~)-~ ~~~~~~|--- -~~~-~~~-- 1981 ~~~~~-~~~~ ~-------~~ ~~~~~~|~~~ ~~~~~~~~~~ -~-~~~~~~~ ~~~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~|~~~~ ~~~~~~-~~~ ----~~~~(~ 2341 ~~~~~)~~~~ ~~-------~ ~~~~~~~~~~ ~~~------- ---~~~~~~~ -~~~(-~~~~ 2401 -)~~|~---- ----~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~( ~~~~~~~~~) ~~~~-~~~~| -~~~~-~~~- ~~~~~~-~~~ 2521 ~--~~~~-~~ |~~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~(~~~~)~ ~--~~~~~~~ 2701 U-U|--C|GC C-AGAG-UAC UACAAGC(-- -GAAA--)GC UUA--AAACU CAAAGGAC-U 2761 UG|GCGGUG- UUUCAGA-CC CACCUAGA|G GAGCCUGU-U |CUAGA--AC CG(AUAAUAC 2821 U--------- ----)CGUUU A-ACCUCACC ACUUCUUGUU ---------- ---------- 2881 (-------uc cc-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGC CUA-UA|UA- 3121 |CC|-GC--C |G------UC GU-CA|G-CU UAC-|CCU(G --UGA)AGG- -----(-uc- 3181 aaa)------ a-aGUAAGCA AAA-UGGG-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ----uauag- 3781 ---------C CCAAAA-CGU C-AGGCCGAG G|UGUA|GCG CAC------- ---------G 3841 A-A-GU-GG- -A-AGA--AA -UGGGCUACA UU--UUCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(-au aa---)---- ---------- ---------- UAG-AAuac- 4021 ---------- -----uaCGC --ACGAC-AC A-C(------ ---------- ---------- 4081 ---------- ---------- UGAAAC---) G-UG-U--AU -C-uUAAAG- -guggaUUUA 4141 G-u--AGUAA A-AAGCAA(- a~~~~-~~-- --)~~~~~~~ ~-~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~--~~~~ 4261 ~~~~~~-~~- ~~~~~~~~-~ -~~~~~~~~~ ~-~~~--~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ -~~~~~~~~< ~~~~~~~~~- 4381 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4501 ~~~~~~~~~~ ~~~~~~~~~~ ~~>~~~~~~~ ~~~~~~~~-- ~~~~~~~~~~ ~~~~~~~~~~ 4561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~-~ ~~~~~~~~~~ ~~~~~~~~-~ ~~~-~~(~~~ 4621 -~)-~~-~~- ~~~~~~~~~~ ~~~------| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS mt.Adon.sp 5213 bp RNA RNA 28-MAY-1998 DEFINITION Mitochondrion Adontosternarchus sp.; . ACCESSION U15274 KEYWORDS . SOURCE Mitochondrion Adontosternarchus sp. ORGANISM Mitochondrion Adontosternarchus sp. REFERENCE 1 (bases 1 to 316) AUTHORS Alves-Gomes,J.A., Orti,G., Haygood,M., Heiligenberg,W. and Meyer,A. TITLE system: a synthesis based on morphology, electrophysiology, and mitochondrial sequence data Phylogenetic analysis of the South American electric fishes (order Gymnotiformes) and the evolution of their electrogenic JOURNAL Mol. Biol. Evol. 12, 298-318 (1995) STANDARD No information REFERENCE 2 (bases 1 to 316) AUTHORS Alves-Gomes,J.A. TITLE Direct Submission JOURNAL Submitted (28-SEP-1994) Jose A. Alves-Gomes, Marine Biology Research Division, Scripps Institution of Oceanography, 8604 La Jolla Shores Dr., La Jolla, CA 92093, USA STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: U15274 BASE COUNT 97 a 84 c 70 g 65 t 4897 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --~~~~~~~~ 661 (~~~-)~-~~ ~|~~~~~-~~ ~~~-~~~~~~ -~-~~~~-~~ |~~-~~--~~ -~~~-~-~~~ 721 -~~~~----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------~~~ ~)~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~|- ~~~~~~~~~~ ~~~~~---~~ ~|~~~-~~~- --~~-~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~~~~ -----)~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~-- 1321 -~~~~~~~~~ ~~~~~(~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~)~~~ 1381 ~~~~~|---~ ~~~~~--~~~ ~|~~~~~-~~ --|------- (-~~~--)-- -------~~| 1441 ~~~~~~~~~~ ~~~~~~~~-~ ~~~~~~~~~~ ~|-~~~~--( ~~~~-)--~~ ~~~~---~-~ 1501 ~~~|~~~-~~ ~~~~~~~~~~ ~-~~~~~~~( ---------- ----~~~~)~ ~~~~~-~~~| 1561 ~|-~~~~-~- ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~|-~~~ 1921 -~~~-~---~ ~~~~-~(-~~ ~~~~~~~-~~ -~~~-~~)-~ ~~~~~~|--- -~~~-~~~-- 1981 ~~~~~-~~~~ ~-------~~ ~~~~~~|~~~ ~~~~~~~~~~ -~-~~~~~~~ ~~~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~|~~~~ ~~~~~~-~~~ ----~~~~(~ 2341 ~~~~~)~~~~ ~~-------~ ~~~~~~~~~~ ~~~------- ---~~~~~~~ -~~~(-~~~~ 2401 -)~~|~---- ----~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~( ~~~~~~~~~) ~~~~-~~~~| -~~~~-~~~- ~~~~~~-~~~ 2521 ~--~~~~-~~ |~~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~(~~~~)~ ~--~~~~~~~ 2701 U-C|--C|GC C-CGAU-UAC UACGAGC(-- -CCCA--)GC UUA--AAACU CAAAGGAC-U 2761 UG|GCGGCG- UCU-cca-CC CGACUAGA|G GAGCCUGU-U |CUAGA--AC CG(AUAACCC 2821 C--------- ----)CGUUC A-ACCUCACC AUCCCUUGUU ---------- ---------- 2881 (-------uu ca-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGC CUA-UA|UA- 3121 |CC|-GC--C |G------UC GU-CA|G-CU UAC-|CCU(G --UGA)AGG- -----(-ua- 3181 aaa)------ u-aGUAAGCA AAA-UGGG-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ----cacaa- 3781 ---------C CCAAAA-CGU C-AGGCCGAG G|UGCA|GCA CAU------- ---------G 3841 G-G-UU-GG- GA-AGA--AA -UGGGCUACA UU--UUCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--c aa---)---- ---------- ---------- UAG-AAuau- 4021 ---------- ---uuaaCGA --ACGGCAGC A--(------ ---------- ---------- 4081 ---------- ---------- UGAAAC---) A-UG-C--GC -C--CGAAG- -guggaUUUA 4141 G-u--AGUAA A-AAGCAA(- a~~~~-~~-- --)~~~~~~~ ~-~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~--~~~~ 4261 ~~~~~~-~~- ~~~~~~~~-~ -~~~~~~~~~ ~-~~~--~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ -~~~~~~~~< ~~~~~~~~~- 4381 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4501 ~~~~~~~~~~ ~~~~~~~~~~ ~~>~~~~~~~ ~~~~~~~~-- ~~~~~~~~~~ ~~~~~~~~~~ 4561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~-~ ~~~~~~~~~~ ~~~~~~~~-~ ~~~-~~(~~~ 4621 -~)-~~-~~- ~~~~~~~~~~ ~~~------| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS mt.A.albif 5213 bp RNA RNA 28-MAY-1998 DEFINITION Mitochondrion Apteronotus albifrons.; . ACCESSION U15275 KEYWORDS . SOURCE Mitochondrion Apteronotus albifrons. ORGANISM Mitochondrion Apteronotus albifrons. REFERENCE 1 (bases 1 to 317) AUTHORS Alves-Gomes,J.A., Orti,G., Haygood,M., Heiligenberg,W. and Meyer,A. TITLE system: a synthesis based on morphology, electrophysiology, and mitochondrial sequence data Phylogenetic analysis of the South American electric fishes (order Gymnotiformes) and the evolution of their electrogenic JOURNAL Mol. Biol. Evol. 12, 298-318 (1995) STANDARD No information REFERENCE 2 (bases 1 to 317) AUTHORS Alves-Gomes,J.A. TITLE Direct Submission JOURNAL Submitted (28-SEP-1994) Jose A. Alves-Gomes, Marine Biology Research Division, Scripps Institution of Oceanography, 8604 La Jolla Shores Dr., La Jolla, CA 92093, USA STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: U15275 BASE COUNT 98 a 83 c 70 g 66 t 4896 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --~~~~~~~~ 661 (~~~-)~-~~ ~|~~~~~-~~ ~~~-~~~~~~ -~-~~~~-~~ |~~-~~--~~ -~~~-~-~~~ 721 -~~~~----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------~~~ ~)~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~|- ~~~~~~~~~~ ~~~~~---~~ ~|~~~-~~~- --~~-~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~~~~ -----)~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~-- 1321 -~~~~~~~~~ ~~~~~(~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~)~~~ 1381 ~~~~~|---~ ~~~~~--~~~ ~|~~~~~-~~ --|------- (-~~~--)-- -------~~| 1441 ~~~~~~~~~~ ~~~~~~~~-~ ~~~~~~~~~~ ~|-~~~~--( ~~~~-)--~~ ~~~~---~-~ 1501 ~~~|~~~-~~ ~~~~~~~~~~ ~-~~~~~~~( ---------- ----~~~~)~ ~~~~~-~~~| 1561 ~|-~~~~-~- ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~|-~~~ 1921 -~~~-~---~ ~~~~-~(-~~ ~~~~~~~-~~ -~~~-~~)-~ ~~~~~~|--- -~~~-~~~-- 1981 ~~~~~-~~~~ ~-------~~ ~~~~~~|~~~ ~~~~~~~~~~ -~-~~~~~~~ ~~~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~|~~~~ ~~~~~~-~~~ ----~~~~(~ 2341 ~~~~~)~~~~ ~~-------~ ~~~~~~~~~~ ~~~------- ---~~~~~~~ -~~~(-~~~~ 2401 -)~~|~---- ----~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~( ~~~~~~~~~) ~~~~-~~~~| -~~~~-~~~- ~~~~~~-~~~ 2521 ~--~~~~-~~ |~~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~(~~~~)~ ~--~~~~~~~ 2701 U-C|--C|GC C-CGAU-UAC UACGAGC(-- -CCCA--)GC UUA--AAACU CAAAGGAC-U 2761 UG|GCGGCG- UCU-cca-CC CGACUAGA|G GAGCCUGU-U |CUAGA--AC CG(AUAACCC 2821 C--------- ----)CGUUC A-ACCUCACC ACCCCUUGUU ---------- ---------- 2881 (-------uu ca-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGC CUA-UA|UA- 3121 |CC|-GC--C |G------UC GU-CA|G-CU UAC-|CCU(G --UGA)AGG- -----(-ua- 3181 aaa)------ u-aGUAAGCA AAA-UGGG-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ----cacaa- 3781 ---------C CCAAAA-CGU C-AGGCCGAG G|UGCA|GCA CAU------- ---------G 3841 G-G-GU-GG- GA-AGA--AA -UGGGCUACA UU--UUCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--c aa---)---- ---------- ---------- UAG-AAuau- 4021 ---------- --uuuaaCGA --ACGGUAGC A--(------ ---------- ---------- 4081 ---------- ---------- UGAAAU---) A-UG-C--AC -C--CGAAG- -guggaUUUA 4141 G-u--AGUAA A-AAGCAA(- a~~~~-~~-- --)~~~~~~~ ~-~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~--~~~~ 4261 ~~~~~~-~~- ~~~~~~~~-~ -~~~~~~~~~ ~-~~~--~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ -~~~~~~~~< ~~~~~~~~~- 4381 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4501 ~~~~~~~~~~ ~~~~~~~~~~ ~~>~~~~~~~ ~~~~~~~~-- ~~~~~~~~~~ ~~~~~~~~~~ 4561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~-~ ~~~~~~~~~~ ~~~~~~~~-~ ~~~-~~(~~~ 4621 -~)-~~-~~- ~~~~~~~~~~ ~~~------| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS mt.A.lepto 5213 bp RNA RNA 28-MAY-1998 DEFINITION Mitochondrion Apteronotus leptorhynchus.; . ACCESSION U15273 KEYWORDS . SOURCE Mitochondrion Apteronotus leptorhynchus. ORGANISM Mitochondrion Apteronotus leptorhynchus. REFERENCE 1 (bases 1 to 316) AUTHORS Alves-Gomes,J.A., Orti,G., Haygood,M., Heiligenberg,W. and Meyer,A. TITLE system: a synthesis based on morphology, electrophysiology, and mitochondrial sequence data Phylogenetic analysis of the South American electric fishes (order Gymnotiformes) and the evolution of their electrogenic JOURNAL Mol. Biol. Evol. 12, 298-318 (1995) STANDARD No information REFERENCE 2 (bases 1 to 316) AUTHORS Alves-Gomes,J.A. TITLE Direct Submission JOURNAL Submitted (28-SEP-1994) Jose A. Alves-Gomes, Marine Biology Research Division, Scripps Institution of Oceanography, 8604 La Jolla Shores Dr., La Jolla, CA 92093, USA STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: U15273 BASE COUNT 99 a 82 c 69 g 66 t 4897 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --~~~~~~~~ 661 (~~~-)~-~~ ~|~~~~~-~~ ~~~-~~~~~~ -~-~~~~-~~ |~~-~~--~~ -~~~-~-~~~ 721 -~~~~----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------~~~ ~)~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~|- ~~~~~~~~~~ ~~~~~---~~ ~|~~~-~~~- --~~-~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~~~~ -----)~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~-- 1321 -~~~~~~~~~ ~~~~~(~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~)~~~ 1381 ~~~~~|---~ ~~~~~--~~~ ~|~~~~~-~~ --|------- (-~~~--)-- -------~~| 1441 ~~~~~~~~~~ ~~~~~~~~-~ ~~~~~~~~~~ ~|-~~~~--( ~~~~-)--~~ ~~~~---~-~ 1501 ~~~|~~~-~~ ~~~~~~~~~~ ~-~~~~~~~( ---------- ----~~~~)~ ~~~~~-~~~| 1561 ~|-~~~~-~- ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~|-~~~ 1921 -~~~-~---~ ~~~~-~(-~~ ~~~~~~~-~~ -~~~-~~)-~ ~~~~~~|--- -~~~-~~~-- 1981 ~~~~~-~~~~ ~-------~~ ~~~~~~|~~~ ~~~~~~~~~~ -~-~~~~~~~ ~~~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~|~~~~ ~~~~~~-~~~ ----~~~~(~ 2341 ~~~~~)~~~~ ~~-------~ ~~~~~~~~~~ ~~~------- ---~~~~~~~ -~~~(-~~~~ 2401 -)~~|~---- ----~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~( ~~~~~~~~~) ~~~~-~~~~| -~~~~-~~~- ~~~~~~-~~~ 2521 ~--~~~~-~~ |~~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~(~~~~)~ ~--~~~~~~~ 2701 U-C|--C|GC C-CGAU-UAC UACGAGC(-- -CCCA--)GC UUA--AAACU CAAAGGAC-U 2761 UG|GCGGCG- UCU-cca-CC CGACUAGA|G GAGCCUGU-U |CUAGA--AC CG(AUAACCC 2821 C--------- ----)CGUUU A-ACCUCACC ACCCCUUGUU ---------- ---------- 2881 (-------uu ca-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGC CUA-UA|UA- 3121 |CC|-GC--C |G------UC GU-CA|G-CU UAC-|CCU(G --UGA)AGG- -----(-aa- 3181 uaa)------ u-aGUAAGCA AAA-UGGG-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ----cacaa- 3781 ---------C CCAAAA-CGU C-AGGCCGAG G|UGCA|GCA CAU------- ---------G 3841 A-G-GU-GG- GA-AGA--AA -UGGGCUACA UU--UUCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--u aa---)---- ---------- ---------- UAG-AAuau- 4021 ---------- ---uuaaCGA --ACGGCAGC A--(------ ---------- ---------- 4081 ---------- ---------- UGAAAC---) A-UG-C--GC -C--CAAAG- -guggaUUUA 4141 G-u--AGUAA A-AAGUAA(- a~~~~-~~-- --)~~~~~~~ ~-~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~--~~~~ 4261 ~~~~~~-~~- ~~~~~~~~-~ -~~~~~~~~~ ~-~~~--~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ -~~~~~~~~< ~~~~~~~~~- 4381 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4501 ~~~~~~~~~~ ~~~~~~~~~~ ~~>~~~~~~~ ~~~~~~~~-- ~~~~~~~~~~ ~~~~~~~~~~ 4561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~-~ ~~~~~~~~~~ ~~~~~~~~-~ ~~~-~~(~~~ 4621 -~)-~~-~~- ~~~~~~~~~~ ~~~------| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS mt.O.taman 5213 bp RNA RNA 28-MAY-1998 DEFINITION Mitochondrion Orthosternarchus tamandua.; . ACCESSION U15259 KEYWORDS . SOURCE Mitochondrion Orthosternarchus tamandua. ORGANISM Mitochondrion Orthosternarchus tamandua. REFERENCE 1 (bases 1 to 316) AUTHORS Alves-Gomes,J.A., Orti,G., Haygood,M., Heiligenberg,W. and Meyer,A. TITLE system: a synthesis based on morphology, electrophysiology, and mitochondrial sequence data Phylogenetic analysis of the South American electric fishes (order Gymnotiformes) and the evolution of their electrogenic JOURNAL Mol. Biol. Evol. 12, 298-318 (1995) STANDARD No information REFERENCE 2 (bases 1 to 316) AUTHORS Alves-Gomes,J.A. TITLE Direct Submission JOURNAL Submitted (28-SEP-1994) Jose A. Alves-Gomes, Marine Biology Research Division, Scripps Institution of Oceanography, 8604 La Jolla Shores Dr., La Jolla, CA 92093, USA STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: U15259 BASE COUNT 99 a 80 c 68 g 68 t 4898 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --~~~~~~~~ 661 (~~~-)~-~~ ~|~~~~~-~~ ~~~-~~~~~~ -~-~~~~-~~ |~~-~~--~~ -~~~-~-~~~ 721 -~~~~----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------~~~ ~)~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~|- ~~~~~~~~~~ ~~~~~---~~ ~|~~~-~~~- --~~-~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~~~~ -----)~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~-- 1321 -~~~~~~~~~ ~~~~~(~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~)~~~ 1381 ~~~~~|---~ ~~~~~--~~~ ~|~~~~~-~~ --|------- (-~~~--)-- -------~~| 1441 ~~~~~~~~~~ ~~~~~~~~-~ ~~~~~~~~~~ ~|-~~~~--( ~~~~-)--~~ ~~~~---~-~ 1501 ~~~|~~~-~~ ~~~~~~~~~~ ~-~~~~~~~( ---------- ----~~~~)~ ~~~~~-~~~| 1561 ~|-~~~~-~- ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~|-~~~ 1921 -~~~-~---~ ~~~~-~(-~~ ~~~~~~~-~~ -~~~-~~)-~ ~~~~~~|--- -~~~-~~~-- 1981 ~~~~~-~~~~ ~-------~~ ~~~~~~|~~~ ~~~~~~~~~~ -~-~~~~~~~ ~~~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~|~~~~ ~~~~~~-~~~ ----~~~~(~ 2341 ~~~~~)~~~~ ~~-------~ ~~~~~~~~~~ ~~~------- ---~~~~~~~ -~~~(-~~~~ 2401 -)~~|~---- ----~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~( ~~~~~~~~~) ~~~~-~~~~| -~~~~-~~~- ~~~~~~-~~~ 2521 ~--~~~~-~~ |~~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~(~~~~)~ ~--~~~~~~~ 2701 U-C|--C|GC C-AGAC-UAC UACGAGC(-- -CUCA--)GC UUA--AAACU CAAAGGAC-U 2761 UG|GCGGCA- UCU-cca-CC CGACUAGA|G GAGCCUGU-U |CUAGA--AC CG(AUAAUCC 2821 C--------- ----)CGUUC A-ACCUCACC ACCCCUUGUU ---------- ---------- 2881 (-------uu ca-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGC CUA-UA|UA- 3121 |CC|-GC--C |G------UC GU-CA|G-CU UAC-|CCU(G --UGA)AGG- -----(uua- 3181 un-)------ u-aGUAAGCA AAA-UGGG-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ----cacaa- 3781 ---------C CCAAAA-CGU C-AGGCCGAG G|UGCA|GCA CAU------- ---------G 3841 G-G-UU-GG- GA-AGA--AA -UGGGCUACA UU--UUCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--c aa---)---- ---------- ---------- UAG-AAuau- 4021 ---------- ---uaaaCGA --AUGACAGC A--(------ ---------- ---------- 4081 ---------- ---------- UGAAAA---) A-UG-C--GC -C--UGAAG- -guggaUUUA 4141 G-u--AGUAA A-AAGCAA(- a~~~~-~~-- --)~~~~~~~ ~-~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~--~~~~ 4261 ~~~~~~-~~- ~~~~~~~~-~ -~~~~~~~~~ ~-~~~--~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ -~~~~~~~~< ~~~~~~~~~- 4381 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4501 ~~~~~~~~~~ ~~~~~~~~~~ ~~>~~~~~~~ ~~~~~~~~-- ~~~~~~~~~~ ~~~~~~~~~~ 4561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~-~ ~~~~~~~~~~ ~~~~~~~~-~ ~~~-~~(~~~ 4621 -~)-~~-~~- ~~~~~~~~~~ ~~~------| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS mt.Ste.sp1 5213 bp RNA RNA 28-MAY-1998 DEFINITION Mitochondrion Sternarchella sp.; . ACCESSION U15254 KEYWORDS . SOURCE Mitochondrion Sternarchella sp. ORGANISM Mitochondrion Sternarchella sp. REFERENCE 1 (bases 1 to 316) AUTHORS Meyer,A. Alves-Gomes,J.A., Orti,G., Haygood,M., Heiligenberg,W. and TITLE and mitochondrial sequence data Phylogenetic analysis of the South American electric fishes (order Gymnotiformes) and the evolution of their electrogenic system: a synthesis based on morphology, electrophysiology, JOURNAL Mol. Biol. Evol. 12, 298-318 (1995) STANDARD No information REFERENCE 2 (bases 1 to 316) AUTHORS Alves-Gomes,J.A. TITLE Direct Submission JOURNAL Submitted (28-SEP-1994) Jose A. Alves-Gomes, Marine Biology Research Division, Scripps Institution of Oceanography, 8604 La Jolla Shores Dr., La Jolla, CA 92093, USA STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: U15254 BASE COUNT 99 a 84 c 70 g 63 t 4897 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --~~~~~~~~ 661 (~~~-)~-~~ ~|~~~~~-~~ ~~~-~~~~~~ -~-~~~~-~~ |~~-~~--~~ -~~~-~-~~~ 721 -~~~~----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------~~~ ~)~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~|- ~~~~~~~~~~ ~~~~~---~~ ~|~~~-~~~- --~~-~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~~~~ -----)~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~-- 1321 -~~~~~~~~~ ~~~~~(~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~)~~~ 1381 ~~~~~|---~ ~~~~~--~~~ ~|~~~~~-~~ --|------- (-~~~--)-- -------~~| 1441 ~~~~~~~~~~ ~~~~~~~~-~ ~~~~~~~~~~ ~|-~~~~--( ~~~~-)--~~ ~~~~---~-~ 1501 ~~~|~~~-~~ ~~~~~~~~~~ ~-~~~~~~~( ---------- ----~~~~)~ ~~~~~-~~~| 1561 ~|-~~~~-~- ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~|-~~~ 1921 -~~~-~---~ ~~~~-~(-~~ ~~~~~~~-~~ -~~~-~~)-~ ~~~~~~|--- -~~~-~~~-- 1981 ~~~~~-~~~~ ~-------~~ ~~~~~~|~~~ ~~~~~~~~~~ -~-~~~~~~~ ~~~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~|~~~~ ~~~~~~-~~~ ----~~~~(~ 2341 ~~~~~)~~~~ ~~-------~ ~~~~~~~~~~ ~~~------- ---~~~~~~~ -~~~(-~~~~ 2401 -)~~|~---- ----~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~( ~~~~~~~~~) ~~~~-~~~~| -~~~~-~~~- ~~~~~~-~~~ 2521 ~--~~~~-~~ |~~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~(~~~~)~ ~--~~~~~~~ 2701 U-C|--C|GC C-CGAU-UAC UACGAGC(-- -CCCA--)GC UUA--AAACU CAAAGGAC-U 2761 UG|GCGGCG- UCU-cca-CC CGACUAGA|G GAGCCUGU-U |CUAGA--AC CG(AUAACCC 2821 C--------- ----)CGUUC A-ACCUCACC ACCCCUUGUU ---------- ---------- 2881 (-------uu ca-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGC CUA-UA|UA- 3121 |CC|-GC--C |G------UC GU-CA|G-CU UAC-|CCU(G --UGA)AGG- -----(caa- 3181 -aa)------ u-aGUAAGCA AAA-UGGG-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ----cacaa- 3781 ---------C CCAAAA-CGU C-AGGCCGAG G|UGCA|GCA CAU------- ---------G 3841 G-G-AU-GG- GA-AGA--AA -UGGGCUACA UU--UUCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--c aa---)---- ---------- ---------- UAG-AAuau- 4021 ---------- ---uuaaCGA --ACGGCAGC A--(------ ---------- ---------- 4081 ---------- ---------- UGAAAU---) A-UG-C--GC -C--CGAAG- -guggaUUUA 4141 G-u--AGUAA A-AAGAAA(- a~~~~-~~-- --)~~~~~~~ ~-~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~--~~~~ 4261 ~~~~~~-~~- ~~~~~~~~-~ -~~~~~~~~~ ~-~~~--~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ -~~~~~~~~< ~~~~~~~~~- 4381 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4501 ~~~~~~~~~~ ~~~~~~~~~~ ~~>~~~~~~~ ~~~~~~~~-- ~~~~~~~~~~ ~~~~~~~~~~ 4561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~-~ ~~~~~~~~~~ ~~~~~~~~-~ ~~~-~~(~~~ 4621 -~)-~~-~~- ~~~~~~~~~~ ~~~------| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS mt.Ste.sp2 5213 bp RNA RNA 28-MAY-1998 DEFINITION Mitochondrion Sternarchogiton sp.; . ACCESSION U15255 KEYWORDS . SOURCE Mitochondrion Sternarchogiton sp. ORGANISM Mitochondrion Sternarchogiton sp. REFERENCE 1 (bases 1 to 316) AUTHORS Alves-Gomes,J.A., Orti,G., Haygood,M., Heiligenberg,W. and Meyer,A. TITLE system: a synthesis based on morphology, electrophysiology, and mitochondrial sequence data Phylogenetic analysis of the South American electric fishes (order Gymnotiformes) and the evolution of their electrogenic JOURNAL Mol. Biol. Evol. 12, 298-318 (1995) STANDARD No information REFERENCE 2 (bases 1 to 316) AUTHORS Alves-Gomes,J.A. TITLE Direct Submission JOURNAL Submitted (28-SEP-1994) Jose A. Alves-Gomes, Marine Biology Research Division, Scripps Institution of Oceanography, 8604 La Jolla Shores Dr., La Jolla, CA 92093, USA STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: U15255 BASE COUNT 98 a 84 c 70 g 64 t 4897 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --~~~~~~~~ 661 (~~~-)~-~~ ~|~~~~~-~~ ~~~-~~~~~~ -~-~~~~-~~ |~~-~~--~~ -~~~-~-~~~ 721 -~~~~----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------~~~ ~)~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~|- ~~~~~~~~~~ ~~~~~---~~ ~|~~~-~~~- --~~-~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~~~~ -----)~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~-- 1321 -~~~~~~~~~ ~~~~~(~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~)~~~ 1381 ~~~~~|---~ ~~~~~--~~~ ~|~~~~~-~~ --|------- (-~~~--)-- -------~~| 1441 ~~~~~~~~~~ ~~~~~~~~-~ ~~~~~~~~~~ ~|-~~~~--( ~~~~-)--~~ ~~~~---~-~ 1501 ~~~|~~~-~~ ~~~~~~~~~~ ~-~~~~~~~( ---------- ----~~~~)~ ~~~~~-~~~| 1561 ~|-~~~~-~- ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~|-~~~ 1921 -~~~-~---~ ~~~~-~(-~~ ~~~~~~~-~~ -~~~-~~)-~ ~~~~~~|--- -~~~-~~~-- 1981 ~~~~~-~~~~ ~-------~~ ~~~~~~|~~~ ~~~~~~~~~~ -~-~~~~~~~ ~~~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~|~~~~ ~~~~~~-~~~ ----~~~~(~ 2341 ~~~~~)~~~~ ~~-------~ ~~~~~~~~~~ ~~~------- ---~~~~~~~ -~~~(-~~~~ 2401 -)~~|~---- ----~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~( ~~~~~~~~~) ~~~~-~~~~| -~~~~-~~~- ~~~~~~-~~~ 2521 ~--~~~~-~~ |~~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~(~~~~)~ ~--~~~~~~~ 2701 U-C|--C|GC C-CGAU-UAC UACGAGC(-- -CCCA--)GC UUA--AAACU CAAAGGAC-U 2761 UG|GCGGCG- UCU-cca-CC CGACUAGA|G GAGCCUGU-U |CUAGA--AC CG(AUAACCC 2821 C--------- ----)CGUUC A-ACCUCACC ACCCCUUGUU ---------- ---------- 2881 (-------uu ca-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGC CUA-UA|UA- 3121 |CC|-GC--C |G------UC GU-CA|G-CU UAC-|CCU(G --UGA)AGG- -----(caa- 3181 -aa)------ u-aGUAAGCA AAA-UGGG-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ----cacaa- 3781 ---------C CCAAAA-CGU C-AGGCCGAG G|UGCA|GCA CAU------- ---------G 3841 G-G-UU-GG- GA-AGA--AA -UGGGCUACA UU--UUCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--c aa---)---- ---------- ---------- UAG-AAuau- 4021 ---------- ---uuaaCGA --ACGGCAGC A--(------ ---------- ---------- 4081 ---------- ---------- UGAAAU---) A-UG-C--GC -C--CGAAG- -guggaUUUA 4141 G-u--AGUAA A-AAGAAA(- a~~~~-~~-- --)~~~~~~~ ~-~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~--~~~~ 4261 ~~~~~~-~~- ~~~~~~~~-~ -~~~~~~~~~ ~-~~~--~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ -~~~~~~~~< ~~~~~~~~~- 4381 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4501 ~~~~~~~~~~ ~~~~~~~~~~ ~~>~~~~~~~ ~~~~~~~~-- ~~~~~~~~~~ ~~~~~~~~~~ 4561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~-~ ~~~~~~~~~~ ~~~~~~~~-~ ~~~-~~(~~~ 4621 -~)-~~-~~- ~~~~~~~~~~ ~~~------| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS mt.S.muell 5213 bp RNA RNA 28-MAY-1998 DEFINITION Mitochondrion Sternarchorhamphus muelleri.; . ACCESSION U15256 KEYWORDS . SOURCE Mitochondrion Sternarchorhamphus muelleri. ORGANISM Mitochondrion Sternarchorhamphus muelleri. REFERENCE 1 (bases 1 to 316) AUTHORS Alves-Gomes,J.A., Orti,G., Haygood,M., Heiligenberg,W. and Meyer,A. TITLE system: a synthesis based on morphology, electrophysiology, and mitochondrial sequence data Phylogenetic analysis of the South American electric fishes (order Gymnotiformes) and the evolution of their electrogenic JOURNAL Mol. Biol. Evol. 12, 298-318 (1995) STANDARD No information REFERENCE 2 (bases 1 to 316) AUTHORS Alves-Gomes,J.A. TITLE Direct Submission JOURNAL Submitted (28-SEP-1994) Jose A. Alves-Gomes, Marine Biology Research Division, Scripps Institution of Oceanography, 8604 La Jolla Shores Dr., La Jolla, CA 92093, USA STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: U15256 BASE COUNT 100 a 79 c 66 g 71 t 4897 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --~~~~~~~~ 661 (~~~-)~-~~ ~|~~~~~-~~ ~~~-~~~~~~ -~-~~~~-~~ |~~-~~--~~ -~~~-~-~~~ 721 -~~~~----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------~~~ ~)~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~|- ~~~~~~~~~~ ~~~~~---~~ ~|~~~-~~~- --~~-~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~~~~ -----)~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~-- 1321 -~~~~~~~~~ ~~~~~(~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~)~~~ 1381 ~~~~~|---~ ~~~~~--~~~ ~|~~~~~-~~ --|------- (-~~~--)-- -------~~| 1441 ~~~~~~~~~~ ~~~~~~~~-~ ~~~~~~~~~~ ~|-~~~~--( ~~~~-)--~~ ~~~~---~-~ 1501 ~~~|~~~-~~ ~~~~~~~~~~ ~-~~~~~~~( ---------- ----~~~~)~ ~~~~~-~~~| 1561 ~|-~~~~-~- ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~|-~~~ 1921 -~~~-~---~ ~~~~-~(-~~ ~~~~~~~-~~ -~~~-~~)-~ ~~~~~~|--- -~~~-~~~-- 1981 ~~~~~-~~~~ ~-------~~ ~~~~~~|~~~ ~~~~~~~~~~ -~-~~~~~~~ ~~~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~|~~~~ ~~~~~~-~~~ ----~~~~(~ 2341 ~~~~~)~~~~ ~~-------~ ~~~~~~~~~~ ~~~------- ---~~~~~~~ -~~~(-~~~~ 2401 -)~~|~---- ----~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~( ~~~~~~~~~) ~~~~-~~~~| -~~~~-~~~- ~~~~~~-~~~ 2521 ~--~~~~-~~ |~~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~(~~~~)~ ~--~~~~~~~ 2701 U-C|--C|GC C-AGAC-UAC UACGAGC(-- -CUCA--)GC UUA--AAACU CAAAGGAC-U 2761 UG|GCGGCA- UCU-cca-CC CGACUAGA|G GAGCCUGU-U |CUAGA--AC CG(AUAAUCC 2821 C--------- ----)CGUUC A-ACCUCACC ACCCCUUGUU ---------- ---------- 2881 (-------uu ca-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGC CUA-UA|UA- 3121 |CC|-GC--C |G------UC GU-CA|G-CU UAC-|CCU(G --UGA)AGG- -----(uuu- 3181 ua-)------ u-aGUAAGCA AAA-UGGA-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ----cacaa- 3781 ---------C CCAAAA-CGU C-AGGCCGAG G|UGCA|GCA UAU------- ---------G 3841 G-G-UU-GG- GA-AGA--AA -UGGGCUACA UU--UUCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--c aa---)---- ---------- ---------- UAG-AAuau- 4021 ---------- ---uuaaCGA --AUAGC-AA C-A(------ ---------- ---------- 4081 ---------- ---------- UGAAAA---) A-CG-U--GC -C--UGAAG- -guggaUUUA 4141 G-u--AGUAA A-AAAGCA(- a~~~~-~~-- --)~~~~~~~ ~-~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~--~~~~ 4261 ~~~~~~-~~- ~~~~~~~~-~ -~~~~~~~~~ ~-~~~--~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ -~~~~~~~~< ~~~~~~~~~- 4381 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4501 ~~~~~~~~~~ ~~~~~~~~~~ ~~>~~~~~~~ ~~~~~~~~-- ~~~~~~~~~~ ~~~~~~~~~~ 4561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~-~ ~~~~~~~~~~ ~~~~~~~~-~ ~~~-~~(~~~ 4621 -~)-~~-~~- ~~~~~~~~~~ ~~~------| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS mt.Brac.sp 5213 bp RNA RNA 28-MAY-1998 DEFINITION Mitochondrion Brachyhypopomus sp.; . ACCESSION U15262 KEYWORDS . SOURCE Mitochondrion Brachyhypopomus sp. ORGANISM Mitochondrion Brachyhypopomus sp. REFERENCE 1 (bases 1 to 316) AUTHORS Alves-Gomes,J.A., Orti,G., Haygood,M., Heiligenberg,W. and Meyer,A. TITLE system: a synthesis based on morphology, electrophysiology, and mitochondrial sequence data Phylogenetic analysis of the South American electric fishes (order Gymnotiformes) and the evolution of their electrogenic JOURNAL Mol. Biol. Evol. 12, 298-318 (1995) STANDARD No information REFERENCE 2 (bases 1 to 316) AUTHORS Alves-Gomes,J.A. TITLE Direct Submission JOURNAL Submitted (28-SEP-1994) Jose A. Alves-Gomes, Marine Biology Research Division, Scripps Institution of Oceanography, 8604 La Jolla Shores Dr., La Jolla, CA 92093, USA STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: U15262 BASE COUNT 96 a 84 c 73 g 63 t 4897 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --~~~~~~~~ 661 (~~~-)~-~~ ~|~~~~~-~~ ~~~-~~~~~~ -~-~~~~-~~ |~~-~~--~~ -~~~-~-~~~ 721 -~~~~----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------~~~ ~)~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~|- ~~~~~~~~~~ ~~~~~---~~ ~|~~~-~~~- --~~-~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~~~~ -----)~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~-- 1321 -~~~~~~~~~ ~~~~~(~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~)~~~ 1381 ~~~~~|---~ ~~~~~--~~~ ~|~~~~~-~~ --|------- (-~~~--)-- -------~~| 1441 ~~~~~~~~~~ ~~~~~~~~-~ ~~~~~~~~~~ ~|-~~~~--( ~~~~-)--~~ ~~~~---~-~ 1501 ~~~|~~~-~~ ~~~~~~~~~~ ~-~~~~~~~( ---------- ----~~~~)~ ~~~~~-~~~| 1561 ~|-~~~~-~- ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~|-~~~ 1921 -~~~-~---~ ~~~~-~(-~~ ~~~~~~~-~~ -~~~-~~)-~ ~~~~~~|--- -~~~-~~~-- 1981 ~~~~~-~~~~ ~-------~~ ~~~~~~|~~~ ~~~~~~~~~~ -~-~~~~~~~ ~~~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~|~~~~ ~~~~~~-~~~ ----~~~~(~ 2341 ~~~~~)~~~~ ~~-------~ ~~~~~~~~~~ ~~~------- ---~~~~~~~ -~~~(-~~~~ 2401 -)~~|~---- ----~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~( ~~~~~~~~~) ~~~~-~~~~| -~~~~-~~~- ~~~~~~-~~~ 2521 ~--~~~~-~~ |~~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~(~~~~)~ ~--~~~~~~~ 2701 U-C|--C|GC C-CGAG-UAC UACGAGC(-- -ACUA--)GC UUA--AAACU CAAAGGAC-U 2761 UG|GCGGUG- ACUCAGA-CC CACCUAGA|G GAGCCUGC-U |CUAGA--AC CG(AUAACCC 2821 C--------- ----)CGUUU A-ACCUCACC ACCUCUUGUU ---------- ---------- 2881 (-------uu uu-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---CGC CUA-UA|UA- 3121 |CC|-GC--C |G------UC AU-CA|G-CC AAC-|CCC(A --UGA)AGG- -----(gau- 3181 aa-)------ u-aGUAGGCA AGA-AGGG-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ----accac- 3781 ---------C CCAAAA-UGU C-AGGCCGAG G|UGUA|GCG UAC------- ---------G 3841 A-G-GU-GG- GAuAGA--AG -UGGGCUACA UU--cucua- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--c ga---)---- ---------- ---------- uag-acuau- 4021 ---------- -----caCAA --AAGAC-GC C-C(------ ---------- ---------- 4081 ---------- ---------- UGAAAU---) A-AG-C--GU -C--CGAAG- -guggaUUUA 4141 G-u--AGUAA A-AAGCAA(- a~~~~-~~-- --)~~~~~~~ ~-~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~--~~~~ 4261 ~~~~~~-~~- ~~~~~~~~-~ -~~~~~~~~~ ~-~~~--~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ -~~~~~~~~< ~~~~~~~~~- 4381 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4501 ~~~~~~~~~~ ~~~~~~~~~~ ~~>~~~~~~~ ~~~~~~~~-- ~~~~~~~~~~ ~~~~~~~~~~ 4561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~-~ ~~~~~~~~~~ ~~~~~~~~-~ ~~~-~~(~~~ 4621 -~)-~~-~~- ~~~~~~~~~~ ~~~------| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS mt.H.leptu 5213 bp RNA RNA 28-MAY-1998 DEFINITION Mitochondrion Hypopygus lepturus.; . ACCESSION U15264 KEYWORDS . SOURCE Mitochondrion Hypopygus lepturus. ORGANISM Mitochondrion Hypopygus lepturus. REFERENCE 1 (bases 1 to 314) AUTHORS Alves-Gomes,J.A., Orti,G., Haygood,M., Heiligenberg,W. and Meyer,A. TITLE system: a synthesis based on morphology, electrophysiology, and mitochondrial sequence data Phylogenetic analysis of the South American electric fishes (order Gymnotiformes) and the evolution of their electrogenic JOURNAL Mol. Biol. Evol. 12, 298-318 (1995) STANDARD No information REFERENCE 2 (bases 1 to 314) AUTHORS Alves-Gomes,J.A. TITLE Direct Submission JOURNAL Submitted (28-SEP-1994) Jose A. Alves-Gomes, Marine Biology Research Division, Scripps Institution of Oceanography, 8604 La Jolla Shores Dr., La Jolla, CA 92093, USA STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: U15264 BASE COUNT 91 a 90 c 69 g 64 t 4899 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --~~~~~~~~ 661 (~~~-)~-~~ ~|~~~~~-~~ ~~~-~~~~~~ -~-~~~~-~~ |~~-~~--~~ -~~~-~-~~~ 721 -~~~~----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------~~~ ~)~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~|- ~~~~~~~~~~ ~~~~~---~~ ~|~~~-~~~- --~~-~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~~~~ -----)~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~-- 1321 -~~~~~~~~~ ~~~~~(~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~)~~~ 1381 ~~~~~|---~ ~~~~~--~~~ ~|~~~~~-~~ --|------- (-~~~--)-- -------~~| 1441 ~~~~~~~~~~ ~~~~~~~~-~ ~~~~~~~~~~ ~|-~~~~--( ~~~~-)--~~ ~~~~---~-~ 1501 ~~~|~~~-~~ ~~~~~~~~~~ ~-~~~~~~~( ---------- ----~~~~)~ ~~~~~-~~~| 1561 ~|-~~~~-~- ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~|-~~~ 1921 -~~~-~---~ ~~~~-~(-~~ ~~~~~~~-~~ -~~~-~~)-~ ~~~~~~|--- -~~~-~~~-- 1981 ~~~~~-~~~~ ~-------~~ ~~~~~~|~~~ ~~~~~~~~~~ -~-~~~~~~~ ~~~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~|~~~~ ~~~~~~-~~~ ----~~~~(~ 2341 ~~~~~)~~~~ ~~-------~ ~~~~~~~~~~ ~~~------- ---~~~~~~~ -~~~(-~~~~ 2401 -)~~|~---- ----~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~( ~~~~~~~~~) ~~~~-~~~~| -~~~~-~~~- ~~~~~~-~~~ 2521 ~--~~~~-~~ |~~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~(~~~~)~ ~--~~~~~~~ 2701 U-C|--C|GC C-UGAG-AAC UACGAGC(-- -AUUC--)GC UUA--AAACU CAAAGGAC-U 2761 UG|GCGGUG- UCUCCGA-CC CCCCUAGA|G GAGCCUGU-U |CUAGA--AU CG(AUACCCC 2821 C--------- ----)CGUUC A-ACCUCACC ACCCCUUGUC ---------- ---------- 2881 (---c---cu cc-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C----GC CUA-UA|UA- 3121 |CC|-GC--C |G------UC GU-CA|G-CU CAC-|CCU(G --UGA)AGG- -----(aaa- 3181 -aa)------ c-aGUAAGCA AAA-UGGG-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ----cccac- 3781 ---------C CCAGAA-CGU C-AGGCCAAG G|UGUA|GCG UAU------- ---------G 3841 A-G-GU-GG- GA-AGA--AA -UGGGCUACA UU--UUCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--u au---)---- ---------- ---------- UAG-ACCAC- 4021 ---------- ------aCGA --AUAGC-AC C-C(------ ---------- ---------- 4081 ---------- ---------- UGAAAC---) G-UA-U--GC -U--CAAAG- -guggaUUUA 4141 G-u--AGUAA A-AAGCAA(- a~~~~-~~-- --)~~~~~~~ ~-~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~--~~~~ 4261 ~~~~~~-~~- ~~~~~~~~-~ -~~~~~~~~~ ~-~~~--~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ -~~~~~~~~< ~~~~~~~~~- 4381 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4501 ~~~~~~~~~~ ~~~~~~~~~~ ~~>~~~~~~~ ~~~~~~~~-- ~~~~~~~~~~ ~~~~~~~~~~ 4561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~-~ ~~~~~~~~~~ ~~~~~~~~-~ ~~~-~~(~~~ 4621 -~)-~~-~~- ~~~~~~~~~~ ~~~------| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS mt.M.bilin 5213 bp RNA RNA 28-MAY-1998 DEFINITION Mitochondrion Microsternarchus bilineatus.; . ACCESSION U15260 KEYWORDS . SOURCE Mitochondrion Microsternarchus bilineatus. ORGANISM Mitochondrion Microsternarchus bilineatus. REFERENCE 1 (bases 1 to 315) AUTHORS Meyer,A. Alves-Gomes,J.A., Orti,G., Haygood,M., Heiligenberg,W. and TITLE and mitochondrial sequence data Phylogenetic analysis of the South American electric fishes (order Gymnotiformes) and the evolution of their electrogenic system: a synthesis based on morphology, electrophysiology, JOURNAL Mol. Biol. Evol. 12, 298-318 (1995) STANDARD No information REFERENCE 2 (bases 1 to 315) AUTHORS Alves-Gomes,J.A. TITLE Direct Submission JOURNAL Submitted (28-SEP-1994) Jose A. Alves-Gomes, Marine Biology Research Division, Scripps Institution of Oceanography, 8604 La Jolla Shores Dr., La Jolla, CA 92093, USA STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: U15260 BASE COUNT 93 a 90 c 72 g 60 t 4898 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --~~~~~~~~ 661 (~~~-)~-~~ ~|~~~~~-~~ ~~~-~~~~~~ -~-~~~~-~~ |~~-~~--~~ -~~~-~-~~~ 721 -~~~~----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------~~~ ~)~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~|- ~~~~~~~~~~ ~~~~~---~~ ~|~~~-~~~- --~~-~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~~~~ -----)~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~-- 1321 -~~~~~~~~~ ~~~~~(~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~)~~~ 1381 ~~~~~|---~ ~~~~~--~~~ ~|~~~~~-~~ --|------- (-~~~--)-- -------~~| 1441 ~~~~~~~~~~ ~~~~~~~~-~ ~~~~~~~~~~ ~|-~~~~--( ~~~~-)--~~ ~~~~---~-~ 1501 ~~~|~~~-~~ ~~~~~~~~~~ ~-~~~~~~~( ---------- ----~~~~)~ ~~~~~-~~~| 1561 ~|-~~~~-~- ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~|-~~~ 1921 -~~~-~---~ ~~~~-~(-~~ ~~~~~~~-~~ -~~~-~~)-~ ~~~~~~|--- -~~~-~~~-- 1981 ~~~~~-~~~~ ~-------~~ ~~~~~~|~~~ ~~~~~~~~~~ -~-~~~~~~~ ~~~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~|~~~~ ~~~~~~-~~~ ----~~~~(~ 2341 ~~~~~)~~~~ ~~-------~ ~~~~~~~~~~ ~~~------- ---~~~~~~~ -~~~(-~~~~ 2401 -)~~|~---- ----~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~( ~~~~~~~~~) ~~~~-~~~~| -~~~~-~~~- ~~~~~~-~~~ 2521 ~--~~~~-~~ |~~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~(~~~~)~ ~--~~~~~~~ 2701 U-C|--C|GC C-CGAG-UAC UACAAGC(-- -ACUA--)GC UUA--AAACU CAAAGGAC-U 2761 UG|GCGGUG- UCUCAGA-CC CAUCUAGA|G GAGCCUGC-U |CUAGA--AC CG(AUAACCC 2821 C--------- ----)CGUUU A-ACCUCACC ACCCCUUGUU ---------- ---------- 2881 (---u---uc cc-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C----GC CUA-UA|UA- 3121 |CC|-GC--C |G------UC AU-CA|G-CC AAC-|CCC(A --UGA)AGG- -----(-ga- 3181 caa)------ u-aGUAGGCA AGA-AGGG-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ----accgc- 3781 ---------C CCCAAA-UGU C-AGGCCGAG G|UGUA|GCG CAC------- ---------G 3841 A-G-GU-GG- AU-AGA--AG -UGGGCUACA UU--CUCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--c ac---)---- ---------- ---------- UAG-AAUAC- 4021 ---------- -----UACgg --aAGGC-AC C-C(------ ---------- ---------- 4081 ---------- ---------- UGAAAC---) A-CA-U--GC -C--UGAAG- -guggaUUUA 4141 G-u--AGUAA A-AAGCAA(- a~~~~-~~-- --)~~~~~~~ ~-~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~--~~~~ 4261 ~~~~~~-~~- ~~~~~~~~-~ -~~~~~~~~~ ~-~~~--~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ -~~~~~~~~< ~~~~~~~~~- 4381 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4501 ~~~~~~~~~~ ~~~~~~~~~~ ~~>~~~~~~~ ~~~~~~~~-- ~~~~~~~~~~ ~~~~~~~~~~ 4561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~-~ ~~~~~~~~~~ ~~~~~~~~-~ ~~~-~~(~~~ 4621 -~)-~~-~~- ~~~~~~~~~~ ~~~------| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS mt.S.elega 5213 bp RNA RNA 28-MAY-1998 DEFINITION Mitochondrion Steatogenys elegans.; . ACCESSION U15253 KEYWORDS . SOURCE Mitochondrion Steatogenys elegans. ORGANISM Mitochondrion Steatogenys elegans. REFERENCE 1 (bases 1 to 315) AUTHORS Alves-Gomes,J.A., Orti,G., Haygood,M., Heiligenberg,W. and Meyer,A. TITLE system: a synthesis based on morphology, electrophysiology, and mitochondrial sequence data Phylogenetic analysis of the South American electric fishes (order Gymnotiformes) and the evolution of their electrogenic JOURNAL Mol. Biol. Evol. 12, 298-318 (1995) STANDARD No information REFERENCE 2 (bases 1 to 315) AUTHORS Alves-Gomes,J.A. TITLE Direct Submission JOURNAL Submitted (28-SEP-1994) Jose A. Alves-Gomes, Marine Biology Research Division, Scripps Institution of Oceanography, 8604 La Jolla Shores Dr., La Jolla, CA 92093, USA STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: U15253 BASE COUNT 87 a 83 c 75 g 70 t 4898 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --~~~~~~~~ 661 (~~~-)~-~~ ~|~~~~~-~~ ~~~-~~~~~~ -~-~~~~-~~ |~~-~~--~~ -~~~-~-~~~ 721 -~~~~----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------~~~ ~)~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~|- ~~~~~~~~~~ ~~~~~---~~ ~|~~~-~~~- --~~-~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~~~~ -----)~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~-- 1321 -~~~~~~~~~ ~~~~~(~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~)~~~ 1381 ~~~~~|---~ ~~~~~--~~~ ~|~~~~~-~~ --|------- (-~~~--)-- -------~~| 1441 ~~~~~~~~~~ ~~~~~~~~-~ ~~~~~~~~~~ ~|-~~~~--( ~~~~-)--~~ ~~~~---~-~ 1501 ~~~|~~~-~~ ~~~~~~~~~~ ~-~~~~~~~( ---------- ----~~~~)~ ~~~~~-~~~| 1561 ~|-~~~~-~- ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~|-~~~ 1921 -~~~-~---~ ~~~~-~(-~~ ~~~~~~~-~~ -~~~-~~)-~ ~~~~~~|--- -~~~-~~~-- 1981 ~~~~~-~~~~ ~-------~~ ~~~~~~|~~~ ~~~~~~~~~~ -~-~~~~~~~ ~~~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~|~~~~ ~~~~~~-~~~ ----~~~~(~ 2341 ~~~~~)~~~~ ~~-------~ ~~~~~~~~~~ ~~~------- ---~~~~~~~ -~~~(-~~~~ 2401 -)~~|~---- ----~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~( ~~~~~~~~~) ~~~~-~~~~| -~~~~-~~~- ~~~~~~-~~~ 2521 ~--~~~~-~~ |~~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~(~~~~)~ ~--~~~~~~~ 2701 U-C|--C|GC C-CGAG-UAC UACGAGC(-- -AU-A--)GC UUA--AAACU CAAAGGAC-U 2761 UG|GCGGUG- UCUCCGA-CC CAUCUAGA|G GAGCCUGU-U |CUAGA--AC CG(AUACCCC 2821 C--------- ----)CGUUU A-ACCUCACC ACCCCUUGUU ---------- ---------- 2881 (---u---uu au-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---c---cGC CUA-UA|UA- 3121 |CC|-GC--C |G------UC GU-CA|G-CU CAC-|CCU(G --UGA)AGG- -----(-aa- 3181 uaa)------ c-aGUAAGCA GAA-UGGG-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ----cccuac 3781 ---------C CCAGAA-CGU C-AGGCCGAG G|UGUA|GCG UAU------- ---------G 3841 A-G-GU-GG- GA-AGA--AA -UGGGCUACA UU--UUCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--u au---)---- ---------- ---------- UAG-ACCA-- 4021 ---------- -----uaCGA --ACGGU-GC C-U(------ ---------- ---------- 4081 ---------- ---------- UGAAAU---) A-CG-C--GC -C--UGAAG- -gaggaUUUA 4141 G-u--AGUAA A-AAGCAA(- g~~~~-~~-- --)~~~~~~~ ~-~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~--~~~~ 4261 ~~~~~~-~~- ~~~~~~~~-~ -~~~~~~~~~ ~-~~~--~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ -~~~~~~~~< ~~~~~~~~~- 4381 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4501 ~~~~~~~~~~ ~~~~~~~~~~ ~~>~~~~~~~ ~~~~~~~~-- ~~~~~~~~~~ ~~~~~~~~~~ 4561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~-~ ~~~~~~~~~~ ~~~~~~~~-~ ~~~-~~(~~~ 4621 -~)-~~-~~- ~~~~~~~~~~ ~~~------| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS mt.Gym.sp2 5213 bp RNA RNA 28-MAY-1998 DEFINITION Mitochondrion Gymnorhamphichthys sp.; . ACCESSION U15267 KEYWORDS . SOURCE Mitochondrion Gymnorhamphichthys sp. ORGANISM Mitochondrion Gymnorhamphichthys sp. REFERENCE 1 (bases 1 to 315) AUTHORS Meyer,A. Alves-Gomes,J.A., Orti,G., Haygood,M., Heiligenberg,W. and TITLE and mitochondrial sequence data Phylogenetic analysis of the South American electric fishes (order Gymnotiformes) and the evolution of their electrogenic system: a synthesis based on morphology, electrophysiology, JOURNAL Mol. Biol. Evol. 12, 298-318 (1995) STANDARD No information REFERENCE 2 (bases 1 to 315) AUTHORS Alves-Gomes,J.A. TITLE Direct Submission JOURNAL Submitted (28-SEP-1994) Jose A. Alves-Gomes, Marine Biology Research Division, Scripps Institution of Oceanography, 8604 La Jolla Shores Dr., La Jolla, CA 92093, USA STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: U15267 BASE COUNT 97 a 84 c 73 g 61 t 4898 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --~~~~~~~~ 661 (~~~-)~-~~ ~|~~~~~-~~ ~~~-~~~~~~ -~-~~~~-~~ |~~-~~--~~ -~~~-~-~~~ 721 -~~~~----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------~~~ ~)~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~|- ~~~~~~~~~~ ~~~~~---~~ ~|~~~-~~~- --~~-~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~~~~ -----)~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~-- 1321 -~~~~~~~~~ ~~~~~(~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~)~~~ 1381 ~~~~~|---~ ~~~~~--~~~ ~|~~~~~-~~ --|------- (-~~~--)-- -------~~| 1441 ~~~~~~~~~~ ~~~~~~~~-~ ~~~~~~~~~~ ~|-~~~~--( ~~~~-)--~~ ~~~~---~-~ 1501 ~~~|~~~-~~ ~~~~~~~~~~ ~-~~~~~~~( ---------- ----~~~~)~ ~~~~~-~~~| 1561 ~|-~~~~-~- ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~|-~~~ 1921 -~~~-~---~ ~~~~-~(-~~ ~~~~~~~-~~ -~~~-~~)-~ ~~~~~~|--- -~~~-~~~-- 1981 ~~~~~-~~~~ ~-------~~ ~~~~~~|~~~ ~~~~~~~~~~ -~-~~~~~~~ ~~~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~|~~~~ ~~~~~~-~~~ ----~~~~(~ 2341 ~~~~~)~~~~ ~~-------~ ~~~~~~~~~~ ~~~------- ---~~~~~~~ -~~~(-~~~~ 2401 -)~~|~---- ----~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~( ~~~~~~~~~) ~~~~-~~~~| -~~~~-~~~- ~~~~~~-~~~ 2521 ~--~~~~-~~ |~~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~(~~~~)~ ~--~~~~~~~ 2701 U-C|--C|GC C-CGAG-UAC UACGAGC(-- -AGAA--)GC UUA--AAACU CAAAGGAC-U 2761 UG|GCGGUG- ACUCAGA-CC CACCUAGA|G GAGCCUGU-U |CUAGA--AC CG(AUACUCC 2821 C--------- ----)CGUUC A-ACCUCACC GCCCCUUGUU ---------- ---------- 2881 (-------aa au-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---cGC CUA-UA|UA- 3121 |CC|-GC--C |G------UC GU-CA|G-CC AAC-|CCU(G --UGA)AGG- -----(-ac- 3181 uaa)------ c-aGUAAGCA ACA-AGGG-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ----auugc- 3781 ---------C CACAAA-CGU C-AGGCCGAG G|UGUA|GCG UAU------- ---------G 3841 G-G-GC-GG- AA-AGA--AA -UGGGCUACA UU--UUCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--u aau--)---- ---------- ---------- UAG-ACcac- 4021 ---------- ------aCGA --AAGGC-AC C-U(------ ---------- ---------- 4081 ---------- ---------- UGAAAC---) A-UG-U--GC -C--UAAAG- -gcggaUUUA 4141 G-u--AGUAA A-AAGCAA(- a~~~~-~~-- --)~~~~~~~ ~-~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~--~~~~ 4261 ~~~~~~-~~- ~~~~~~~~-~ -~~~~~~~~~ ~-~~~--~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ -~~~~~~~~< ~~~~~~~~~- 4381 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4501 ~~~~~~~~~~ ~~~~~~~~~~ ~~>~~~~~~~ ~~~~~~~~-- ~~~~~~~~~~ ~~~~~~~~~~ 4561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~-~ ~~~~~~~~~~ ~~~~~~~~-~ ~~~-~~(~~~ 4621 -~)-~~-~~- ~~~~~~~~~~ ~~~------| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS mt.Rham.sp 5213 bp RNA RNA 28-MAY-1998 DEFINITION Mitochondrion Rhamphichthys sp.; . ACCESSION U15257 KEYWORDS . SOURCE Mitochondrion Rhamphichthys sp. ORGANISM Mitochondrion Rhamphichthys sp. REFERENCE 1 (bases 1 to 314) AUTHORS Alves-Gomes,J.A., Orti,G., Haygood,M., Heiligenberg,W. and Meyer,A. TITLE system: a synthesis based on morphology, electrophysiology, and mitochondrial sequence data Phylogenetic analysis of the South American electric fishes (order Gymnotiformes) and the evolution of their electrogenic JOURNAL Mol. Biol. Evol. 12, 298-318 (1995) STANDARD No information REFERENCE 2 (bases 1 to 314) AUTHORS Alves-Gomes,J.A. TITLE Direct Submission JOURNAL Submitted (28-SEP-1994) Jose A. Alves-Gomes, Marine Biology Research Division, Scripps Institution of Oceanography, 8604 La Jolla Shores Dr., La Jolla, CA 92093, USA STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: U15257 BASE COUNT 93 a 82 c 71 g 68 t 4899 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --~~~~~~~~ 661 (~~~-)~-~~ ~|~~~~~-~~ ~~~-~~~~~~ -~-~~~~-~~ |~~-~~--~~ -~~~-~-~~~ 721 -~~~~----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------~~~ ~)~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~|- ~~~~~~~~~~ ~~~~~---~~ ~|~~~-~~~- --~~-~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~~~~ -----)~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~-- 1321 -~~~~~~~~~ ~~~~~(~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~)~~~ 1381 ~~~~~|---~ ~~~~~--~~~ ~|~~~~~-~~ --|------- (-~~~--)-- -------~~| 1441 ~~~~~~~~~~ ~~~~~~~~-~ ~~~~~~~~~~ ~|-~~~~--( ~~~~-)--~~ ~~~~---~-~ 1501 ~~~|~~~-~~ ~~~~~~~~~~ ~-~~~~~~~( ---------- ----~~~~)~ ~~~~~-~~~| 1561 ~|-~~~~-~- ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~|-~~~ 1921 -~~~-~---~ ~~~~-~(-~~ ~~~~~~~-~~ -~~~-~~)-~ ~~~~~~|--- -~~~-~~~-- 1981 ~~~~~-~~~~ ~-------~~ ~~~~~~|~~~ ~~~~~~~~~~ -~-~~~~~~~ ~~~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~|~~~~ ~~~~~~-~~~ ----~~~~(~ 2341 ~~~~~)~~~~ ~~-------~ ~~~~~~~~~~ ~~~------- ---~~~~~~~ -~~~(-~~~~ 2401 -)~~|~---- ----~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~( ~~~~~~~~~) ~~~~-~~~~| -~~~~-~~~- ~~~~~~-~~~ 2521 ~--~~~~-~~ |~~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~(~~~~)~ ~--~~~~~~~ 2701 U-C|--C|GC C-CGAG-UAC UACAAGC(-- -AUUA--)GC UUA--AAACU CAAAGGAC-U 2761 UG|GCGGUG- UCUCCGA-CC CAUCUAGA|G GAGCCUGU-U |CUAGA--AC CG(AUACCCC 2821 C--------- ----)CGUUC A-ACCUCACC ACCUCUUGUU ---------- ---------- 2881 (-------uu au-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---CGC CUA-UA|UA- 3121 |CC|-GC--C |G------UC GU-CA|G-CU CAC-|CCU(G --UGA)AGG- -----(aaa- 3181 -aa)------ c-aGUAAGCA AAA-AGGG-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ----ucuac- 3781 ---------C CCAAAA-CGU C-AGGCCGAG G|UGUA|GCG UAU------- ---------G 3841 A-G-GU-GG- GA-AGA--AA -UGGGCUACA UU--UUCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--u aa---)---- ---------- ---------- UAG-A-cua- 4021 ---------- -----uaCGA --ACGGC-AC C-C(------ ---------- ---------- 4081 ---------- ---------- UGAAAC---) G-CG-U--GC -C--UGAAG- -guggaUUUA 4141 G-u--AGUAA A-AAGCAA(- a~~~~-~~-- --)~~~~~~~ ~-~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~--~~~~ 4261 ~~~~~~-~~- ~~~~~~~~-~ -~~~~~~~~~ ~-~~~--~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ -~~~~~~~~< ~~~~~~~~~- 4381 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4501 ~~~~~~~~~~ ~~~~~~~~~~ ~~>~~~~~~~ ~~~~~~~~-- ~~~~~~~~~~ ~~~~~~~~~~ 4561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~-~ ~~~~~~~~~~ ~~~~~~~~-~ ~~~-~~(~~~ 4621 -~)-~~-~~- ~~~~~~~~~~ ~~~------| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS mt.Ste.sp3 5213 bp RNA RNA 28-MAY-1998 DEFINITION Mitochondrion Sternopygus sp.; . ACCESSION U15252 KEYWORDS . SOURCE Mitochondrion Sternopygus sp. ORGANISM Mitochondrion Sternopygus sp. REFERENCE 1 (bases 1 to 316) AUTHORS Alves-Gomes,J.A., Orti,G., Haygood,M., Heiligenberg,W. and Meyer,A. TITLE system: a synthesis based on morphology, electrophysiology, and mitochondrial sequence data Phylogenetic analysis of the South American electric fishes (order Gymnotiformes) and the evolution of their electrogenic JOURNAL Mol. Biol. Evol. 12, 298-318 (1995) STANDARD No information REFERENCE 2 (bases 1 to 316) AUTHORS Alves-Gomes,J.A. TITLE Direct Submission JOURNAL Submitted (28-SEP-1994) Jose A. Alves-Gomes, Marine Biology Research Division, Scripps Institution of Oceanography, 8604 La Jolla Shores Dr., La Jolla, CA 92093, USA STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: U15252 BASE COUNT 101 a 80 c 69 g 66 t 4897 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --~~~~~~~~ 661 (~~~-)~-~~ ~|~~~~~-~~ ~~~-~~~~~~ -~-~~~~-~~ |~~-~~--~~ -~~~-~-~~~ 721 -~~~~----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------~~~ ~)~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~|- ~~~~~~~~~~ ~~~~~---~~ ~|~~~-~~~- --~~-~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~~~~ -----)~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~-- 1321 -~~~~~~~~~ ~~~~~(~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~)~~~ 1381 ~~~~~|---~ ~~~~~--~~~ ~|~~~~~-~~ --|------- (-~~~--)-- -------~~| 1441 ~~~~~~~~~~ ~~~~~~~~-~ ~~~~~~~~~~ ~|-~~~~--( ~~~~-)--~~ ~~~~---~-~ 1501 ~~~|~~~-~~ ~~~~~~~~~~ ~-~~~~~~~( ---------- ----~~~~)~ ~~~~~-~~~| 1561 ~|-~~~~-~- ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~|-~~~ 1921 -~~~-~---~ ~~~~-~(-~~ ~~~~~~~-~~ -~~~-~~)-~ ~~~~~~|--- -~~~-~~~-- 1981 ~~~~~-~~~~ ~-------~~ ~~~~~~|~~~ ~~~~~~~~~~ -~-~~~~~~~ ~~~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~|~~~~ ~~~~~~-~~~ ----~~~~(~ 2341 ~~~~~)~~~~ ~~-------~ ~~~~~~~~~~ ~~~------- ---~~~~~~~ -~~~(-~~~~ 2401 -)~~|~---- ----~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~( ~~~~~~~~~) ~~~~-~~~~| -~~~~-~~~- ~~~~~~-~~~ 2521 ~--~~~~-~~ |~~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~(~~~~)~ ~--~~~~~~~ 2701 U-C|--C|GC C-CGAG-UAC UACAAGC(-- -AUAA--)GC UUA--AAACU CAAAGGAC-U 2761 UG|GCGGUG- UCUCAGA-CC CACCUAGA|G GAGCCUGU-U |CUAGA--AC CG(AUAACCC 2821 C--------- ----)CGUUA A-ACCUCACC ACCCCUUGUU ---------- ---------- 2881 (---u---uc cc-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---c----GC CUA-UA|UA- 3121 |CC|-GC--C |G------UC GU-CA|G-CU UAC-|CCU(G --UGA)AGG- -----(-ac- 3181 aaa)------ c-aGUAAGCA AAA-UGGA-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ----uaaaa- 3781 ---------C CCGAAA-CGU C-AGGCCGAG G|UGUA|GCG AAC------- ---------G 3841 A-G-GU-GG- GA-AGA--AA -UGGGCUACA UU--UUCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--u ca---)---- ---------- ---------- UAG-AAuau- 4021 ---------- ----ucaCGA --ACGGC-AC C-C(------ ---------- ---------- 4081 ---------- ---------- UGAAAU---) A-UA-U--GC -C--UGAAG- -guggaUUUA 4141 G-u--AGUAA A-AAGAAA(- a~~~~-~~-- --)~~~~~~~ ~-~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~--~~~~ 4261 ~~~~~~-~~- ~~~~~~~~-~ -~~~~~~~~~ ~-~~~--~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ -~~~~~~~~< ~~~~~~~~~- 4381 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4501 ~~~~~~~~~~ ~~~~~~~~~~ ~~>~~~~~~~ ~~~~~~~~-- ~~~~~~~~~~ ~~~~~~~~~~ 4561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~-~ ~~~~~~~~~~ ~~~~~~~~-~ ~~~-~~(~~~ 4621 -~)-~~-~~- ~~~~~~~~~~ ~~~------| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS (18)-Silur 5213 bp RNA RNA 25-JAN-1994 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: DIVIDER BASE COUNT 0 a 0 c 0 g 0 t 5213 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ----|..... .......... .......... 541 .......... .......... .......... .......... .......... .......... 601 .......... .......... .......... .......... .......... .......... 661 .......-.. .......... .......... ..-....... |......... ....-..... 721 .......-.. .....|.... ........-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- ------.... .......... 841 .......... .......... .......... .......... .......... .......... 901 .......... .......... .......... .......... .......... .......... 961 .....-..|. .......... .......... .|........ -......... .....-.... 1021 .......... ....---... ..-..---.. .......... .......... .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .......... .......... .......... .......... .......... 1201 .......... .......... .......... .......... .......... .......... 1261 .......... .......... .........- .......... ..----.... ........-- 1321 .......... .......... .......... .......... .......... .......... 1381 ......---. .......... .......-.. .......... .......... .......... 1441 .......... ........-. ..-....... .......... .......... ........-. 1501 ...|...-.. .......... .......... .......... .......... .....-...| 1561 .......... .......... .......... .......... .--....... .......... 1621 .......... .......... .......... .......... .......... .......... 1681 .......... .......... .......... .......... .......... .......... 1741 .......... .......... .......... .......... .......... .......... 1801 .......... .......... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .......... .......... 1921 .......... .......-.. .......... -.......-. .......... .......... 1981 .....-.... ...--..... .......... .......... -......... .......... 2041 .......... .....----. .......... .......... .....----- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- --------.. .......... .......... .......... 2221 .......... .......... .......... .......... ........|. .......-.. 2281 .......... -......... ......--.. .-........ .......... ---....... 2341 .......... ...-...... ....-..... .......... .......... .......... 2401 ....|..... .......... .......... .......... .......... .....-.... 2461 .....--... .......... .......... .......... .......... .......... 2521 .--....-.. |......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... .......... 2701 .-..-..... .......... .......... .......... .......... .......... 2761 ..|....... .......... ........|. ........-. |......... .......... 2821 .--------- ----...... .-........ .......... .......... .......... 2881 .....---.. ..-....... .......... .......... .......... .......... 2941 .......... .......... .......... .......... .......... .......... 3001 .......... .......... .......... .......... .......... .......... 3061 .......... .......... .......... .......... .--....... ...-.....- 3121 .......--. |......... .......-.. .......... .-........ .........- 3181 .......... .-........ .......... .......... .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .......... .......... .......... 3361 .......... .......... .......... .......... .....--... .......... 3421 .......... .......... .......... .......... .......... .......... 3481 .......... ........-- --........ .......... .......... .......... 3541 .......... .......... .......... .......... .......... .......... 3601 .......... .......... .......... .......... .......... .......... 3661 .......... .......... .......... .......... .......... .......... 3721 .......... .......... .......... .......... .....-.... .......... 3781 .......... .......... .......... ......|... ...------- -------... 3841 ...-..-... ..-....... .......... ..-....... ......-... ..--...... 3901 .......... .......... .......... .......... .......... .......... 3961 .......... .......... ...-...... .......... .......... .......... 4021 ......---. .......... .-........ .-........ .......... .......... 4081 .......... .......... ......-... .......... .........- .......... 4141 .-.-...... .......... .......... .......... .-........ .......... 4201 .......... .......... .......... .......... .......... .......... 4261 .......... .......... .......... .-........ ...-...... .......... 4321 .......... ......-... .........- .......... -......... .........- 4381 .....-.... .......... ........-- ....-..... .......... .......... 4441 .......... .......... .......... .......... .......... .......... 4501 .......... .......... ...--..... ........-- .......... .......... 4561 .......... .......... ........-. .......... ........-. ...-...... 4621 -.....-... .......... .......... .......... .......... .......... 4681 .......... .......... .......... .......... .......... .......... 4741 .......... .......... .......... .......... .......... .......... 4801 .......... .......... .......... .......... .......... .......... 4861 .......... .......... .......... .......... .......... .......... 4921 .......... .......... .......... .......... .......... .......... 4981 .......... .......... .......... .......... .......... .......... 5041 .......... .......... .......... .......... .......... .......... 5101 .......... .......... .......... .......... .......... .......... 5161 .......... .......... .......... .......... ........|| ||| // LOCUS mt.Cory.sp 5213 bp RNA RNA 28-MAY-1998 DEFINITION Mitochondrion Corydoras sp.; . ACCESSION U15271 KEYWORDS . SOURCE Mitochondrion Corydoras sp. ORGANISM Mitochondrion Corydoras sp. REFERENCE 1 (bases 1 to 314) AUTHORS Alves-Gomes,J.A., Orti,G., Haygood,M., Heiligenberg,W. and Meyer,A. TITLE system: a synthesis based on morphology, electrophysiology, and mitochondrial sequence data Phylogenetic analysis of the South American electric fishes (order Gymnotiformes) and the evolution of their electrogenic JOURNAL Mol. Biol. Evol. 12, 298-318 (1995) STANDARD No information REFERENCE 2 (bases 1 to 314) AUTHORS Alves-Gomes,J.A. TITLE Direct Submission JOURNAL Submitted (28-SEP-1994) Jose A. Alves-Gomes, Marine Biology Research Division, Scripps Institution of Oceanography, 8604 La Jolla Shores Dr., La Jolla, CA 92093, USA STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: U15271 BASE COUNT 105 a 78 c 67 g 64 t 4899 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --~~~~~~~~ 661 (~~~-)~-~~ ~|~~~~~-~~ ~~~-~~~~~~ -~-~~~~-~~ |~~-~~--~~ -~~~-~-~~~ 721 -~~~~----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------~~~ ~)~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~|- ~~~~~~~~~~ ~~~~~---~~ ~|~~~-~~~- --~~-~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~~~~ -----)~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~-- 1321 -~~~~~~~~~ ~~~~~(~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~)~~~ 1381 ~~~~~|---~ ~~~~~--~~~ ~|~~~~~-~~ --|------- (-~~~--)-- -------~~| 1441 ~~~~~~~~~~ ~~~~~~~~-~ ~~~~~~~~~~ ~|-~~~~--( ~~~~-)--~~ ~~~~---~-~ 1501 ~~~|~~~-~~ ~~~~~~~~~~ ~-~~~~~~~( ---------- ----~~~~)~ ~~~~~-~~~| 1561 ~|-~~~~-~- ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~|-~~~ 1921 -~~~-~---~ ~~~~-~(-~~ ~~~~~~~-~~ -~~~-~~)-~ ~~~~~~|--- -~~~-~~~-- 1981 ~~~~~-~~~~ ~-------~~ ~~~~~~|~~~ ~~~~~~~~~~ -~-~~~~~~~ ~~~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~|~~~~ ~~~~~~-~~~ ----~~~~(~ 2341 ~~~~~)~~~~ ~~-------~ ~~~~~~~~~~ ~~~------- ---~~~~~~~ -~~~(-~~~~ 2401 -)~~|~---- ----~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~( ~~~~~~~~~) ~~~~-~~~~| -~~~~-~~~- ~~~~~~-~~~ 2521 ~--~~~~-~~ |~~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~(~~~~)~ ~--~~~~~~~ 2701 U-C|--C|GC C-AGGG-UAC UACGAGC(-- -AU-A--)GC UUA--AAACC CAAAGGAC-U 2761 UG|GCGGUG- UCUCAGA-CC CACCUAGA|G GAGCCUGU-U |CUAGA--AC CG(AUAACCC 2821 C--------- ----)CGUUA A-ACCUCACC ACUUCUUGUU ---------- ---------- 2881 (---a---au cc-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C----GC CUA-UA|UA- 3121 |CC|-GC--C |G------UC GC-CA|G-CU UAC-|CCU(A --UGA)AGG- -----(caa- 3181 -aa)------ c-aGUAAGCA AAA-UGGA-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ----caaaa- 3781 ---------C CCAAAA-CGU C-AGGUCGAG G|UGUA|GCG CAC------- ---------G 3841 A-A-GU-GG- GA-AGA--AA -UGGGCUACA UU--UUCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--u ua---)---- ---------- ---------- CAG-AAAAU- 4021 ---------- -----CACgA --AUGGUUUA C--(------ ---------- ---------- 4081 ---------- ---------- UGAAAU---) A-CA-C--AC -C--UGAAG- -gaggaUUUA 4141 G-u--AGUAA A-AAGCAA(- a~~~~-~~-- --)~~~~~~~ ~-~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~--~~~~ 4261 ~~~~~~-~~- ~~~~~~~~-~ -~~~~~~~~~ ~-~~~--~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ -~~~~~~~~< ~~~~~~~~~- 4381 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4501 ~~~~~~~~~~ ~~~~~~~~~~ ~~>~~~~~~~ ~~~~~~~~-- ~~~~~~~~~~ ~~~~~~~~~~ 4561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~-~ ~~~~~~~~~~ ~~~~~~~~-~ ~~~-~~(~~~ 4621 -~)-~~-~~- ~~~~~~~~~~ ~~~------| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS mt.Ceto.sp 5213 bp RNA RNA 28-MAY-1998 DEFINITION Mitochondrion Cetopsis sp.; . ACCESSION U15272 KEYWORDS . SOURCE Mitochondrion Cetopsis sp. ORGANISM Mitochondrion Cetopsis sp. REFERENCE 1 (bases 1 to 316) AUTHORS Alves-Gomes,J.A., Orti,G., Haygood,M., Heiligenberg,W. and Meyer,A. TITLE system: a synthesis based on morphology, electrophysiology, and mitochondrial sequence data Phylogenetic analysis of the South American electric fishes (order Gymnotiformes) and the evolution of their electrogenic JOURNAL Mol. Biol. Evol. 12, 298-318 (1995) STANDARD No information REFERENCE 2 (bases 1 to 316) AUTHORS Alves-Gomes,J.A. TITLE Direct Submission JOURNAL Submitted (28-SEP-1994) Jose A. Alves-Gomes, Marine Biology Research Division, Scripps Institution of Oceanography, 8604 La Jolla Shores Dr., La Jolla, CA 92093, USA STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: U15272 BASE COUNT 101 a 79 c 67 g 69 t 4897 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --~~~~~~~~ 661 (~~~-)~-~~ ~|~~~~~-~~ ~~~-~~~~~~ -~-~~~~-~~ |~~-~~--~~ -~~~-~-~~~ 721 -~~~~----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------~~~ ~)~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~|- ~~~~~~~~~~ ~~~~~---~~ ~|~~~-~~~- --~~-~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~~~~ -----)~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~-- 1321 -~~~~~~~~~ ~~~~~(~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~)~~~ 1381 ~~~~~|---~ ~~~~~--~~~ ~|~~~~~-~~ --|------- (-~~~--)-- -------~~| 1441 ~~~~~~~~~~ ~~~~~~~~-~ ~~~~~~~~~~ ~|-~~~~--( ~~~~-)--~~ ~~~~---~-~ 1501 ~~~|~~~-~~ ~~~~~~~~~~ ~-~~~~~~~( ---------- ----~~~~)~ ~~~~~-~~~| 1561 ~|-~~~~-~- ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~|-~~~ 1921 -~~~-~---~ ~~~~-~(-~~ ~~~~~~~-~~ -~~~-~~)-~ ~~~~~~|--- -~~~-~~~-- 1981 ~~~~~-~~~~ ~-------~~ ~~~~~~|~~~ ~~~~~~~~~~ -~-~~~~~~~ ~~~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~|~~~~ ~~~~~~-~~~ ----~~~~(~ 2341 ~~~~~)~~~~ ~~-------~ ~~~~~~~~~~ ~~~------- ---~~~~~~~ -~~~(-~~~~ 2401 -)~~|~---- ----~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~( ~~~~~~~~~) ~~~~-~~~~| -~~~~-~~~- ~~~~~~-~~~ 2521 ~--~~~~-~~ |~~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~(~~~~)~ ~--~~~~~~~ 2701 U-C|--C|GC C-AGGG-UAC UACGAGC(-- -A-UA--)GC UUG--AAACC CAAAGGAC-U 2761 UG|GCGGUA- UCUCAGA-CC CACCUAGA|G GAGCCUGU-U |CUAUA--AC CG(AUAACCC 2821 C--------- ----)CGUUA A-ACCUCACC ACUUCUUGUC ---------- ---------- 2881 (--ca---cu cc-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C----GC CUA-UA|UA- 3121 |CC|-GC--C |G------UC GU-CA|G-UU UAC-|CCU(G --UAA)AGG- -----(-ac- 3181 uaa)------ u-aGUAAACA AAA-UGGG-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ----cucac- 3781 ---------C CAAAAA-CGU C-AGGUCGAG G|UGUA|GCG AAU------- ---------G 3841 A-A-GU-GG- GA-AGA--AA -UGGGCUACA UU--UUCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--c au---)---- ---------- ---------- CAG-AAUAA- 4021 ---------- -----UACgA --ACGGC-AC C-C(------ ---------- ---------- 4081 ---------- ---------- UGAAAU-a-) U-AG-U--GC -C--CAAAG- -guggaUUUA 4141 G-u--AGUAA A-AAGUAA(- a~~~~-~~-- --)~~~~~~~ ~-~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~--~~~~ 4261 ~~~~~~-~~- ~~~~~~~~-~ -~~~~~~~~~ ~-~~~--~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ -~~~~~~~~< ~~~~~~~~~- 4381 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4501 ~~~~~~~~~~ ~~~~~~~~~~ ~~>~~~~~~~ ~~~~~~~~-- ~~~~~~~~~~ ~~~~~~~~~~ 4561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~-~ ~~~~~~~~~~ ~~~~~~~~-~ ~~~-~~(~~~ 4621 -~)-~~-~~- ~~~~~~~~~~ ~~~------| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS mt.Hemi.sp 5213 bp RNA RNA 28-MAY-1998 DEFINITION Mitochondrion Hemicetopsis sp.; . ACCESSION U15265 KEYWORDS . SOURCE Mitochondrion Hemicetopsis sp. ORGANISM Mitochondrion Hemicetopsis sp. REFERENCE 1 (bases 1 to 316) AUTHORS Alves-Gomes,J.A., Orti,G., Haygood,M., Heiligenberg,W. and Meyer,A. TITLE system: a synthesis based on morphology, electrophysiology, and mitochondrial sequence data Phylogenetic analysis of the South American electric fishes (order Gymnotiformes) and the evolution of their electrogenic JOURNAL Mol. Biol. Evol. 12, 298-318 (1995) STANDARD No information REFERENCE 2 (bases 1 to 316) AUTHORS Alves-Gomes,J.A. TITLE Direct Submission JOURNAL Submitted (28-SEP-1994) Jose A. Alves-Gomes, Marine Biology Research Division, Scripps Institution of Oceanography, 8604 La Jolla Shores Dr., La Jolla, CA 92093, USA STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: U15265 BASE COUNT 101 a 81 c 68 g 66 t 4897 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --~~~~~~~~ 661 (~~~-)~-~~ ~|~~~~~-~~ ~~~-~~~~~~ -~-~~~~-~~ |~~-~~--~~ -~~~-~-~~~ 721 -~~~~----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------~~~ ~)~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~|- ~~~~~~~~~~ ~~~~~---~~ ~|~~~-~~~- --~~-~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~~~~ -----)~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~-- 1321 -~~~~~~~~~ ~~~~~(~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~)~~~ 1381 ~~~~~|---~ ~~~~~--~~~ ~|~~~~~-~~ --|------- (-~~~--)-- -------~~| 1441 ~~~~~~~~~~ ~~~~~~~~-~ ~~~~~~~~~~ ~|-~~~~--( ~~~~-)--~~ ~~~~---~-~ 1501 ~~~|~~~-~~ ~~~~~~~~~~ ~-~~~~~~~( ---------- ----~~~~)~ ~~~~~-~~~| 1561 ~|-~~~~-~- ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~|-~~~ 1921 -~~~-~---~ ~~~~-~(-~~ ~~~~~~~-~~ -~~~-~~)-~ ~~~~~~|--- -~~~-~~~-- 1981 ~~~~~-~~~~ ~-------~~ ~~~~~~|~~~ ~~~~~~~~~~ -~-~~~~~~~ ~~~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~|~~~~ ~~~~~~-~~~ ----~~~~(~ 2341 ~~~~~)~~~~ ~~-------~ ~~~~~~~~~~ ~~~------- ---~~~~~~~ -~~~(-~~~~ 2401 -)~~|~---- ----~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~( ~~~~~~~~~) ~~~~-~~~~| -~~~~-~~~- ~~~~~~-~~~ 2521 ~--~~~~-~~ |~~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~(~~~~)~ ~--~~~~~~~ 2701 U-C|--C|GC C-AGGG-UAC UACGAGC(-- -AU-A--)GC UUA--AAACC CAAAGGAC-U 2761 UG|GCGGUA- UCUCAGA-CC CACCUAGA|G GAGCCUGU-U |CUGUA--AU CG(ACAACCC 2821 C--------- ----)CGUUA A-ACCUCACC ACUUCUGGCC ---------- ---------- 2881 (---c---gc cc-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C----GU CUA-UA|UA- 3121 |CC|-GC--C |G------UC GC-CA|G-UU UAC-|CCU(G --UAA)AGG- -----(-ac- 3181 uaa)------ c-aGUAAACA AAA-UGGG-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ----cucac- 3781 ---------C CAAAAA-CGU C-AGGUCAAG G|UGUA|GCG AAU------- ---------G 3841 A-A-GU-GG- GA-AGA--AA -UGGGCUACA UU--UUCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--c au---)---- ---------- ---------- CAG-AAuau- 4021 ---------- ----auaCGA --ACGGC-AC C-C(------ ---------- ---------- 4081 ---------- ---------- UGAAAU-a-) U-AG-U--GC -C--CAAAG- -guggaUUUA 4141 G-u--AGUAA A-AAGUAA(- a~~~~-~~-- --)~~~~~~~ ~-~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~--~~~~ 4261 ~~~~~~-~~- ~~~~~~~~-~ -~~~~~~~~~ ~-~~~--~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ -~~~~~~~~< ~~~~~~~~~- 4381 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4501 ~~~~~~~~~~ ~~~~~~~~~~ ~~>~~~~~~~ ~~~~~~~~-- ~~~~~~~~~~ ~~~~~~~~~~ 4561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~-~ ~~~~~~~~~~ ~~~~~~~~-~ ~~~-~~(~~~ 4621 -~)-~~-~~- ~~~~~~~~~~ ~~~------| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS mt.Hypo.sp 5213 bp RNA RNA 28-MAY-1998 DEFINITION Mitochondrion Hypostomus sp.; . ACCESSION U15263 KEYWORDS . SOURCE Mitochondrion Hypostomus sp. ORGANISM Mitochondrion Hypostomus sp. REFERENCE 1 (bases 1 to 316) AUTHORS Alves-Gomes,J.A., Orti,G., Haygood,M., Heiligenberg,W. and Meyer,A. TITLE system: a synthesis based on morphology, electrophysiology, and mitochondrial sequence data Phylogenetic analysis of the South American electric fishes (order Gymnotiformes) and the evolution of their electrogenic JOURNAL Mol. Biol. Evol. 12, 298-318 (1995) STANDARD No information REFERENCE 2 (bases 1 to 316) AUTHORS Alves-Gomes,J.A. TITLE Direct Submission JOURNAL Submitted (28-SEP-1994) Jose A. Alves-Gomes, Marine Biology Research Division, Scripps Institution of Oceanography, 8604 La Jolla Shores Dr., La Jolla, CA 92093, USA STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: U15263 BASE COUNT 94 a 80 c 74 g 68 t 4897 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --~~~~~~~~ 661 (~~~-)~-~~ ~|~~~~~-~~ ~~~-~~~~~~ -~-~~~~-~~ |~~-~~--~~ -~~~-~-~~~ 721 -~~~~----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------~~~ ~)~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~|- ~~~~~~~~~~ ~~~~~---~~ ~|~~~-~~~- --~~-~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~~~~ -----)~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~-- 1321 -~~~~~~~~~ ~~~~~(~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~)~~~ 1381 ~~~~~|---~ ~~~~~--~~~ ~|~~~~~-~~ --|------- (-~~~--)-- -------~~| 1441 ~~~~~~~~~~ ~~~~~~~~-~ ~~~~~~~~~~ ~|-~~~~--( ~~~~-)--~~ ~~~~---~-~ 1501 ~~~|~~~-~~ ~~~~~~~~~~ ~-~~~~~~~( ---------- ----~~~~)~ ~~~~~-~~~| 1561 ~|-~~~~-~- ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~|-~~~ 1921 -~~~-~---~ ~~~~-~(-~~ ~~~~~~~-~~ -~~~-~~)-~ ~~~~~~|--- -~~~-~~~-- 1981 ~~~~~-~~~~ ~-------~~ ~~~~~~|~~~ ~~~~~~~~~~ -~-~~~~~~~ ~~~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~|~~~~ ~~~~~~-~~~ ----~~~~(~ 2341 ~~~~~)~~~~ ~~-------~ ~~~~~~~~~~ ~~~------- ---~~~~~~~ -~~~(-~~~~ 2401 -)~~|~---- ----~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~( ~~~~~~~~~) ~~~~-~~~~| -~~~~-~~~- ~~~~~~-~~~ 2521 ~--~~~~-~~ |~~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~(~~~~)~ ~--~~~~~~~ 2701 U-C|--C|GC C-AGGG-AAC UACAAGC(-- -A-CA--)GC UUA--AAACC CAAAGGAC-U 2761 UG|GCGGUG- CCUCAGA-CC CACCUAGA|G GAGCCUGU-U |CUAGA--AC CG(AUAAUCC 2821 C--------- ----)CGUUA A-ACCUCACC ACCCCUUGUU ---------- ---------- 2881 (---u---uu cc-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C----GC CUA-UA|UA- 3121 |CC|-GC--C |G------UC GC-CA|G-CU UAC-|CCU(G --UGA)AGG- -----(-uu- 3181 uaa)------ c-aGUAAGCA AAA-UGGG-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ----uucaa- 3781 ---------C CCAGAA-CGU C-AGGUCGAG G|UGUA|GCG CAU------- ---------G 3841 G-A-GU-GG- GA-AGA--AA -UGGGCUACA UU--UUCUG- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--c ca---)---- ---------- ---------- CAG-AAUAU- 4021 ---------- -----UACgA --AUGGU-GU C-C(------ ---------- ---------- 4081 ---------- ---------- UGAAAU-a-) U-GA-C--AC -C-uGGAAG- -gaggaUUUA 4141 G-u--AGUAA A-AAGCAA(- a~~~~-~~-- --)~~~~~~~ ~-~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~--~~~~ 4261 ~~~~~~-~~- ~~~~~~~~-~ -~~~~~~~~~ ~-~~~--~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ -~~~~~~~~< ~~~~~~~~~- 4381 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4501 ~~~~~~~~~~ ~~~~~~~~~~ ~~>~~~~~~~ ~~~~~~~~-- ~~~~~~~~~~ ~~~~~~~~~~ 4561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~-~ ~~~~~~~~~~ ~~~~~~~~-~ ~~~-~~(~~~ 4621 -~)-~~-~~- ~~~~~~~~~~ ~~~------| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS mt.Mala.sp 5213 bp RNA RNA 28-MAY-1998 DEFINITION Mitochondrion Malapterurus sp.; . ACCESSION U15261 KEYWORDS . SOURCE Mitochondrion Malapterurus sp. ORGANISM Mitochondrion Malapterurus sp. REFERENCE 1 (bases 1 to 317) AUTHORS Alves-Gomes,J.A., Orti,G., Haygood,M., Heiligenberg,W. and Meyer,A. TITLE system: a synthesis based on morphology, electrophysiology, and mitochondrial sequence data Phylogenetic analysis of the South American electric fishes (order Gymnotiformes) and the evolution of their electrogenic JOURNAL Mol. Biol. Evol. 12, 298-318 (1995) STANDARD No information REFERENCE 2 (bases 1 to 317) AUTHORS Alves-Gomes,J.A. TITLE Direct Submission JOURNAL Submitted (28-SEP-1994) Jose A. Alves-Gomes, Marine Biology Research Division, Scripps Institution of Oceanography, 8604 La Jolla Shores Dr., La Jolla, CA 92093, USA STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: U15261 BASE COUNT 102 a 81 c 69 g 65 t 4896 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --~~~~~~~~ 661 (~~~-)~-~~ ~|~~~~~-~~ ~~~-~~~~~~ -~-~~~~-~~ |~~-~~--~~ -~~~-~-~~~ 721 -~~~~----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------~~~ ~)~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~|- ~~~~~~~~~~ ~~~~~---~~ ~|~~~-~~~- --~~-~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~~~~ -----)~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~-- 1321 -~~~~~~~~~ ~~~~~(~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~)~~~ 1381 ~~~~~|---~ ~~~~~--~~~ ~|~~~~~-~~ --|------- (-~~~--)-- -------~~| 1441 ~~~~~~~~~~ ~~~~~~~~-~ ~~~~~~~~~~ ~|-~~~~--( ~~~~-)--~~ ~~~~---~-~ 1501 ~~~|~~~-~~ ~~~~~~~~~~ ~-~~~~~~~( ---------- ----~~~~)~ ~~~~~-~~~| 1561 ~|-~~~~-~- ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~|-~~~ 1921 -~~~-~---~ ~~~~-~(-~~ ~~~~~~~-~~ -~~~-~~)-~ ~~~~~~|--- -~~~-~~~-- 1981 ~~~~~-~~~~ ~-------~~ ~~~~~~|~~~ ~~~~~~~~~~ -~-~~~~~~~ ~~~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~|~~~~ ~~~~~~-~~~ ----~~~~(~ 2341 ~~~~~)~~~~ ~~-------~ ~~~~~~~~~~ ~~~------- ---~~~~~~~ -~~~(-~~~~ 2401 -)~~|~---- ----~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~( ~~~~~~~~~) ~~~~-~~~~| -~~~~-~~~- ~~~~~~-~~~ 2521 ~--~~~~-~~ |~~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~(~~~~)~ ~--~~~~~~~ 2701 U-C|--C|GC C-AGGG-UAC UACGAGC(-- -A-CA--)GC UUA--AAACC CAAAGGAC-U 2761 UG|GCGGUG- UCUCAGA-CC CACCUAGA|G GAGCCUGU-U |CUAGA--AC CG(AUAACCC 2821 C--------- ----)CGUUA A-ACCUCACC ACUCCUUGUU ---------- ---------- 2881 (---u---ua cc-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C----GC CUA-UA|UA- 3121 |CC|-GC--C |G------UC GU-CA|G-CU UAC-|CCU(G --UGA)AGG- -----(ca-- 3181 caa)------ c-aGUAAGCA AAA-UAGA-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ----uucac- 3781 ---------C CAAAAA-CGU C-AGGUCGAG G|UGUA|GCG UAC------- ---------G 3841 A-A-GU-GG- AA-AGA--AA -UGGGCUACA UU--UUCUU- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--a ac---)---- ---------- ---------- acu-aagaa- 4021 ---------- --aauuaCGA --ACGGC-AC A-C(------ ---------- ---------- 4081 ---------- ---------- UGAAAA---) U-AG-U--GC -C--CGAAG- -guggaUUUA 4141 G-u--AGUAA A-AAGCAA(- g~~~~-~~-- --)~~~~~~~ ~-~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~--~~~~ 4261 ~~~~~~-~~- ~~~~~~~~-~ -~~~~~~~~~ ~-~~~--~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ -~~~~~~~~< ~~~~~~~~~- 4381 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4501 ~~~~~~~~~~ ~~~~~~~~~~ ~~>~~~~~~~ ~~~~~~~~-- ~~~~~~~~~~ ~~~~~~~~~~ 4561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~-~ ~~~~~~~~~~ ~~~~~~~~-~ ~~~-~~(~~~ 4621 -~)-~~-~~- ~~~~~~~~~~ ~~~------| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS mt.Tric.sp 5213 bp RNA RNA 28-MAY-1998 DEFINITION Mitochondrion Trichomycterus sp.; . ACCESSION U15251 KEYWORDS . SOURCE Mitochondrion Trichomycterus sp. ORGANISM Mitochondrion Trichomycterus sp. REFERENCE 1 (bases 1 to 300) AUTHORS Alves-Gomes,J.A., Orti,G., Haygood,M., Heiligenberg,W. and Meyer,A. TITLE system: a synthesis based on morphology, electrophysiology, and mitochondrial sequence data Phylogenetic analysis of the South American electric fishes (order Gymnotiformes) and the evolution of their electrogenic JOURNAL Mol. Biol. Evol. 12, 298-318 (1995) STANDARD No information REFERENCE 2 (bases 1 to 300) AUTHORS Alves-Gomes,J.A. TITLE Direct Submission JOURNAL Submitted (28-SEP-1994) Jose A. Alves-Gomes, Marine Biology Research Division, Scripps Institution of Oceanography, 8604 La Jolla Shores Dr., La Jolla, CA 92093, USA STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: U15251 BASE COUNT 91 a 80 c 66 g 63 t 4913 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --~~~~~~~~ 661 (~~~-)~-~~ ~|~~~~~-~~ ~~~-~~~~~~ -~-~~~~-~~ |~~-~~--~~ -~~~-~-~~~ 721 -~~~~----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------~~~ ~)~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~|- ~~~~~~~~~~ ~~~~~---~~ ~|~~~-~~~- --~~-~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~~~~ -----)~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~-- 1321 -~~~~~~~~~ ~~~~~(~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~)~~~ 1381 ~~~~~|---~ ~~~~~--~~~ ~|~~~~~-~~ --|------- (-~~~--)-- -------~~| 1441 ~~~~~~~~~~ ~~~~~~~~-~ ~~~~~~~~~~ ~|-~~~~--( ~~~~-)--~~ ~~~~---~-~ 1501 ~~~|~~~-~~ ~~~~~~~~~~ ~-~~~~~~~( ---------- ----~~~~)~ ~~~~~-~~~| 1561 ~|-~~~~-~- ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~|-~~~ 1921 -~~~-~---~ ~~~~-~(-~~ ~~~~~~~-~~ -~~~-~~)-~ ~~~~~~|--- -~~~-~~~-- 1981 ~~~~~-~~~~ ~-------~~ ~~~~~~|~~~ ~~~~~~~~~~ -~-~~~~~~~ ~~~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~|~~~~ ~~~~~~-~~~ ----~~~~(~ 2341 ~~~~~)~~~~ ~~-------~ ~~~~~~~~~~ ~~~------- ---~~~~~~~ -~~~(-~~~~ 2401 -)~~|~---- ----~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~( ~~~~~~~~~) ~~~~-~~~~| -~~~~-~~~- ~~~~~~-~~~ 2521 ~--~~~~-~~ |~~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~(~~~~)~ ~--~~~~~~~ 2701 U-C|--C|GC C-AGGG-UAC UACGAGC(-- -A-CA--)GC UUA--AAACC CAAAGGAC-U 2761 UG|GCGGUG- C-ucagA-UC CACCUAGA|G GAGCCUGU-U |CUAGA--AC CG(AUAACCC 2821 C--------- ----)CGUUA A-ACCUUACC AUCCCUUGUU ---------- ---------- 2881 (-------ua cc-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---CGC CUA-UA|UA- 3121 |CC|-GC--C |G------UC GU-CA|G-CU UAC-|CCU(G --UAA)AGG- -----(-ac- 3181 aaa)------ c-aGUAAGCA AAA-UGGG-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ----ucaac- 3781 ---------C CCAAAA-CGU C-AGGUCGAG G|UGUA|GCG UAC------- ---------G 3841 A-G-AU-GG- AA-AGA--AA -UGGGCUACA UU--UUCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--u ua---)---- ---------- ---------- CAG-AAUAC- 4021 ---------- -----CACag --auAGC-GU C-C(------ ---------- ---------- 4081 ---------- ---------- UGAAAU---) A-AA-C--GC -U--UGAAG- -gcggaUUUA 4141 G-c------- --------(- -~~~~-~~-- --)~~~~~~~ ~-~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~--~~~~ 4261 ~~~~~~-~~- ~~~~~~~~-~ -~~~~~~~~~ ~-~~~--~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ -~~~~~~~~< ~~~~~~~~~- 4381 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4501 ~~~~~~~~~~ ~~~~~~~~~~ ~~>~~~~~~~ ~~~~~~~~-- ~~~~~~~~~~ ~~~~~~~~~~ 4561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~-~ ~~~~~~~~~~ ~~~~~~~~-~ ~~~-~~(~~~ 4621 -~)-~~-~~- ~~~~~~~~~~ ~~~------| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS (17)-Parac 5213 bp RNA RNA 25-JAN-1994 DEFINITION Paracanthopterygii. ACCESSION No information KEYWORDS No information. SOURCE Paracanthopterygii. ORGANISM Paracanthopterygii. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: DIVIDER BASE COUNT 0 a 0 c 0 g 0 t 5213 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ----|..... .......... .......... 541 .......... .......... .......... .......... .......... .......... 601 .......... .......... .......... .......... .......... .......... 661 .......-.. .......... .......... ..-....... |......... ....-..... 721 .......-.. .....|.... ........-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- ------.... .......... 841 .......... .......... .......... .......... .......... .......... 901 .......... .......... .......... .......... .......... .......... 961 .....-..|. .......... .......... .|........ -......... .....-.... 1021 .......... ....---... ..-..---.. .......... .......... .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .......... .......... .......... .......... .......... 1201 .......... .......... .......... .......... .......... .......... 1261 .......... .......... .........- .......... ..----.... ........-- 1321 .......... .......... .......... .......... .......... .......... 1381 ......---. .......... .......-.. .......... .......... .......... 1441 .......... ........-. ..-....... .......... .......... ........-. 1501 ...|...-.. .......... .......... .......... .......... .....-...| 1561 .......... .......... .......... .......... .--....... .......... 1621 .......... .......... .......... .......... .......... .......... 1681 .......... .......... .......... .......... .......... .......... 1741 .......... .......... .......... .......... .......... .......... 1801 .......... .......... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .......... .......... 1921 .......... .......-.. .......... -.......-. .......... .......... 1981 .....-.... ...--..... .......... .......... -......... .......... 2041 .......... .....----. .......... .......... .....----- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- --------.. .......... .......... .......... 2221 .......... .......... .......... .......... ........|. .......-.. 2281 .......... -......... ......--.. .-........ .......... ---....... 2341 .......... ...-...... ....-..... .......... .......... .......... 2401 ....|..... .......... .......... .......... .......... .....-.... 2461 .....--... .......... .......... .......... .......... .......... 2521 .--....-.. |......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... .......... 2701 .-..-..... .......... .......... .......... .......... .......... 2761 ..|....... .......... ........|. ........-. |......... .......... 2821 .--------- ----...... .-........ .......... .......... .......... 2881 .....---.. ..-....... .......... .......... .......... .......... 2941 .......... .......... .......... .......... .......... .......... 3001 .......... .......... .......... .......... .......... .......... 3061 .......... .......... .......... .......... .--....... ...-.....- 3121 .......--. |......... .......-.. .......... .-........ .........- 3181 .......... .-........ .......... .......... .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .......... .......... .......... 3361 .......... .......... .......... .......... .....--... .......... 3421 .......... .......... .......... .......... .......... .......... 3481 .......... ........-- --........ .......... .......... .......... 3541 .......... .......... .......... .......... .......... .......... 3601 .......... .......... .......... .......... .......... .......... 3661 .......... .......... .......... .......... .......... .......... 3721 .......... .......... .......... .......... .....-.... .......... 3781 .......... .......... .......... ......|... ...------- -------... 3841 ...-..-... ..-....... .......... ..-....... ......-... ..--...... 3901 .......... .......... .......... .......... .......... .......... 3961 .......... .......... ...-...... .......... .......... .......... 4021 ......---. .......... .-........ .-........ .......... .......... 4081 .......... .......... ......-... .......... .........- .......... 4141 .-.-...... .......... .......... .......... .-........ .......... 4201 .......... .......... .......... .......... .......... .......... 4261 .......... .......... .......... .-........ ...-...... .......... 4321 .......... ......-... .........- .......... -......... .........- 4381 .....-.... .......... ........-- ....-..... .......... .......... 4441 .......... .......... .......... .......... .......... .......... 4501 .......... .......... ...--..... ........-- .......... .......... 4561 .......... .......... ........-. .......... ........-. ...-...... 4621 -.....-... .......... .......... .......... .......... .......... 4681 .......... .......... .......... .......... .......... .......... 4741 .......... .......... .......... .......... .......... .......... 4801 .......... .......... .......... .......... .......... .......... 4861 .......... .......... .......... .......... .......... .......... 4921 .......... .......... .......... .......... .......... .......... 4981 .......... .......... .......... .......... .......... .......... 5041 .......... .......... .......... .......... .......... .......... 5101 .......... .......... .......... .......... .......... .......... 5161 .......... .......... .......... .......... ........|| ||| // LOCUS mt.G.morhu 5213 bp RNA RNA 08-AUG-1996 DEFINITION Mitochondrion Gadus morhua.; 12S ribosomal RNA; 12S rRNA gene; 16S ribosomal RNA; 16S rRNA gene; ATPase; cytochrome C; cytochrome oxidase; NADH dehydrogenase; transfer RNA-Ala; transfer RNA-Arg; transfer RNA-Asn; transfer RNA-Asp; transfer RNA-Cys; transfer RNA-Gln; transfer RNA-Glu; transfer RNA-Gly; transfer RNA-His; transfer RNA-Ile; transfer RNA-Leu; transfer RNA-Lys; transfer RNA-Met; transfer RNA-Phe; transfer RNA-Pro; transfer RNA-Ser; transfer RNA-Thr; transfer RNA-Trp; transfer RNA-Tyr; transfer RNA-Val; tRNA-Ala gene; tRNA-Arg gene; tRNA-Asn gene; tRNA-Asp gene; tRNA-Cys gene; tRNA-Gln gene; tRNA-Glu gene; tRNA-Gly gene; tRNA-His gene; tRNA-Ile gene; tRNA-Leu gene; tRNA-Lys gene; tRNA-Met gene; tRNA-Phe gene; tRNA-Pro gene; tRNA-Ser gene; tRNA-Thr gene; tRNA-Trp gene; tRNA-Tyr gene; tRNA-Val gene. ACCESSION X99772 KEYWORDS 12S ribosomal RNA; 12S rRNA gene; 16S ribosomal RNA; 16S rRNA gene; ATPase; cytochrome C; cytochrome oxidase; NADH dehydrogenase; transfer RNA-Ala; transfer RNA-Arg; transfer RNA-Asn; transfer RNA-Asp; transfer RNA-Cys; transfer RNA-Gln; transfer RNA-Glu; transfer RNA-Gly; transfer RNA-His; transfer RNA-Ile; transfer RNA-Leu; transfer RNA-Lys; transfer RNA-Met; transfer RNA-Phe; transfer RNA-Pro; transfer RNA-Ser; transfer RNA-Thr; transfer RNA-Trp; transfer RNA-Tyr; transfer RNA-Val; tRNA-Ala gene; tRNA-Arg gene; tRNA-Asn gene; tRNA-Asp gene; tRNA-Cys gene; tRNA-Gln gene; tRNA-Glu gene; tRNA-Gly gene; tRNA-His gene; tRNA-Ile gene; tRNA-Leu gene; tRNA-Lys gene; tRNA-Met gene; tRNA-Phe gene; tRNA-Pro gene; tRNA-Ser gene; tRNA-Thr gene; tRNA-Trp gene; tRNA-Tyr gene; tRNA-Val gene. SOURCE Mitochondrion Gadus morhua. ORGANISM Mitochondrion Gadus morhua. REFERENCE 1 (bases 1 to 16696) AUTHORS Johansen,S. and Bakke,I. TITLE Gadus morhua: relevance to taxonomic studies among cod-fishes The complete mitochondrial DNA sequence of Atlantic cod, JOURNAL Mol. Marine Biol. Biotechnol. In press STANDARD No information REFERENCE 2 (bases 1 to 16696) AUTHORS Johansen,S. TITLE Direct Submission JOURNAL Submitted (01-AUG-1996) S. Johansen, Institute of Medical Biology, University of Tromso, MH-Building, Breivika, 9037 Tromso, NORWAY STANDARD No information COMMENTS Organism information Culture collection: X99772 Sequence information (bases 1 to 5213) Corresponding GenBank entry: X99772 BASE COUNT 302 a 225 c 208 g 215 t 4263 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --caaAGGUU 661 (UGG-)U-CC U|GACUU-UA CUA-UCAAUU -G-UACC-CU |AA-UU--UA -CAC-A-UGC 721 -AAGu----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------cuc c)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------|- gCCUCCCCGU GAGAA---UG C|CCU-Uaa- --ug-uc--- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- --(cugcccg -----)---- 1261 ---------- ---------- --ga--au-- --uAAGGAGC |--------- AGGUAUCA-- 1321 -GGCACAU-- -----(cuaa uaguuua--- ---------- ---------- ------)--- 1381 ---CU|---A GCCCA--UAA C|GCCUU-GC --|------- (-uca--)-- -------GC| 1441 CACA------ ---------- ---------- -|-CCCC--( UACG-)--GG UAuu---C-A 1501 GCA|GUG-AU AAAAUUUAAG C-CAUAAGU( ---------- ----GAAA)G CUUGA-CUU| 1561 A|-GUUA-A- GG-GAA---a ga-------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- GGGCC|-GGU 1921 -AAA-A---C UCGU-G(-CC AGCCACC-GC -GGU-UA)-U ACGAGA|--- -GGC-CCA-- 1981 AAUUG-AUGA A--------a aaCGGC|GUA AAGCGUGGUU -A-aga---- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 ------a--- -aaaagagaa aauaug--gc -----|CGAA cagcUU-CAA ----AGCA(G 2341 UUAUA)CGCa UC-------C GAAG-ucacG AAG------- ----aacaau -cAC(-GAAA 2401 -)GU|u---- ----gcccua a-----aacc ---------- ucc-gauuCC ACGAA-AGCC 2461 A-UAA---AA CAAACUGGG( AUUAGAUAC) CCCA-CUAU| -GUAU-GGU- CGUUAA-CAU 2521 U--GAUG-GU |UU|------ ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- --u(auac)c c---AAACCA 2701 U-C|--C|GC C-UGGG-AAC UACGAGC(-- -AAUA--)GC UUA--AAACC CAAAGGAC-U 2761 UG|GCGGUG- CUUUAGA-CC CCCCUAGA|G GAGCCUGU-U |CUAGA--AC UG(AUAACCC 2821 C--------- ----)CGUUU A-ACCUCACC AUCCUUUGUU ---------- ---------- 2881 (-------uu cc-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---CGC CUA-UA|UA- 3121 |CC|-AC--C |G------UC GU-CA|G-CU UAC-|CCU(G --UGA)AGG- -----(aaa- 3181 a--)------ u-aGUAAGCA UAA-AUGC-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- -----aaag- 3781 ---------C CAAAAA-CGU C-AGGUCGAG G|UGUA|GCG UAU------- ---------G 3841 G-G-AU-GG- GA-AGA--AA -UGGGCUACA UU--CUCUG- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--u ua---)---- ---------- ---------- CAG-AGaa-- 4021 ---------- -----UACGA --AUUGU-AA U-U(------ ---------- ---------- 4081 ---------- ---------- UGAAAa-a-) A-AU-U--AC -C--UGAAG- -gaggaUUUA 4141 G-C--AGUAA G-UAGGGA(- cuaga-gu-- --)GCCCUGC U-GAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -AAC--GGCC 4261 CUGAAG-CG- CGCACACA-C -CGCCCGUCA C-UCU--CUC CA-------- ---------- 4321 ---------- ---------- ---------- ---------- ---------< aauaaaccc- 4381 --uag-auau uaccu-aaaa ugcuuuuuau aaua------ ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- ---------A GGGG-AGG-C AAGUCGUAAC AUGGUAAG-C GUA-CC(GGA 4621 -A)GGU-GC- GCUUGGAUGA AC-------| ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- --------|| ||| // LOCUS mt.O.mykis 5213 bp RNA RNA 11-JAN-191 DEFINITION Mitochondrion Oncorhynchus mykiss. ACCESSION No information KEYWORDS No information. SOURCE Mitochondrion Oncorhynchus mykiss. ORGANISM Mitochondrion Oncorhynchus mykiss. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: L29771 DEFINITION Oncorhynchus mykiss mitochondrion complete genome. SOURCE Mitochondrion Oncorhynchus mykiss (organelle Mitochondrion Oncorhynchus mykiss) adult liver DNA. ORGANISM Mitochondrion Oncorhynchus mykiss Eukaryota; Animalia; Chordata; Vertebrata; Osteichthyes; Actinopterygii; Salmoniformes; Salmonoidei; Salmonidae. REFERENCE 1 (bases 1 to 16660) AUTHORS Zardoya,R., Bautista,J.M. and Garrido-Pertierra,A. TITLE The complete nucleotide sequence of the mitochondrial DNA of the Rainbow trout, Oncorhynchus mykiss JOURNAL Unpublished (1994) COMMENT NCBI gi: 463153 FEATURES Location/Qualifiers D-loop 1..1003 /note="control region" tRNA 1004..1071 /anticodon=(pos:1034..1036,aa:Phe) /product="transfer RNA-Phe" /gene="tRNA-Phe" /note="putative" rRNA 1072..2015 /product="12S ribosomal RNA" /gene="12S rRNA" /note="putative" tRNA 2016..2087 /anticodon=(pos:2049..2051,aa:Val) /product="transfer RNA-Val" /gene="tRNA-Val" /note="putative" rRNA 2088..3767 /product="16S ribosomal RNA" /gene="16S rRNA" /note="putative" tRNA 3768..3843 /anticodon=(pos:3804..3806,aa:Leu) /product="transfer RNA-Leu" /gene="tRNA-Leu" /note="putative" tRNA 4819..4890 /anticodon=(pos:4851..4853,aa:Ile) /product="transfer RNA-Ile" /gene="tRNA-Ile" /note="putative" tRNA complement(4888..4958) /anticodon=(pos:4924..4926,aa:Gln) /product="transfer RNA-Gln" /gene="tRNA-Gln" /note="putative" tRNA 4958..5026 /anticodon=(pos:4988..4990,aa:Met) /product="transfer RNA-Met" /gene="tRNA-Met" /note="putative" tRNA 6079..6147 /anticodon=(pos:6111..6113,aa:Trp) /product="transfer RNA-Trp" /gene="tRNA-Trp" /note="putative" tRNA complement(6149..6217) /anticodon=(pos:6185..6187,aa:Ala) /product="transfer RNA-Ala" /gene="tRNA-Ala" /note="putative" tRNA complement(6219..6291) /anticodon=(pos:6257..6259,aa:Asn) /product="transfer RNA-Asn" /gene="tRNA-Asn" /note="putative" rep_origin complement(6292..6328) /standard_name="OriL" /note="Origin of L-strand replication; putative" tRNA complement(6329..6395) /anticodon=(pos:6365..6367,aa:Cys) /product="transfer RNA-Cys" /gene="tRNA-Cys" /note="putative" tRNA complement(6396..6466) /anticodon=(pos:6432..6434,aa:Tyr) /product="transfer RNA-Tyr" /gene="tRNA-Tyr" /note="putative" tRNA complement(8019..8089) /anticodon=(pos:8055..8057,aa:Ser) /product="transfer RNA-Ser" /gene="tRNA-Ser" /note="(UCN); putative" tRNA 8094..8166 /anticodon=(pos:8129..8131,aa:Asp) /product="transfer RNA-Asp" /gene="tRNA-Asp" /note="putative" tRNA 8872..8945 /anticodon=(pos:8906..8908,aa:Lys) /product="transfer RNA-Lys" /gene="tRNA-Lys" /note="putative" tRNA 10561..10630 /anticodon=(pos:10592..10594,aa:Gly) /product="transfer RNA-Gly" /gene="tRNA-Gly" /note="putative" tRNA 10981..11049 /anticodon=(pos:11011..11013,aa:Arg) /product="transfer RNA-Arg" /gene="tRNA-Arg" /note="putative" tRNA 12721..12789 /anticodon=(pos:12751..12753,aa:His) /product="transfer RNA-His" /gene="tRNA-His" /note="putative" tRNA 12790..12858 /anticodon=(pos:12817..12819,aa:Ser) /product="transfer RNA-Ser" /gene="tRNA-Ser" /note="(AGY); putative" tRNA 12860..12931 /anticodon=(pos:12893..12895,aa:Leu) /product="transfer RNA-Leu" /gene="tRNA-Leu" /note="(CUN); putative" tRNA complement(15307..15375) /anticodon=(pos:15343..15345,aa:Glu) /product="transfer RNA-Glu" /gene="tRNA-Glu" /note="putative" tRNA 16520..16591 /anticodon=(pos:16552..16554,aa:Thr) /product="transfer RNA-Thr" /gene="tRNA-Thr" /note="putative" tRNA complement(16591..16660) /anticodon=(pos:16627..16629,aa:Pro) /product="transfer RNA-Pro" /gene="tRNA-Pro" /note="putative" source 1..16660 /organism="Mitochondrion Oncorhynchus mykiss" /mitochondrion="Mitochondrion Oncorhynchus mykiss" /cell_type="hepatocyte" /dev_stage="adult" /sequenced_mol="DNA" /tissue_type="liver" CDS 3844..4815 /gene="NADH-1" /note="putative; NCBI gi: 463154." /product="NADH dehydrogenase subunit 1" /codon_start=1 /translation="MITLITHVINPLAYIVPVLLAVAFLTLLERKVLGYMQLRKGPNI VGPYGLLQPIADGLKLFIKETVRPSTSSPFLFLATPMLALTLALTLWAPMPIPYPVTD LNLGVLFVLALSSLAVYSILGSGWASNSKYALIGELRAVAQTISYEVSLGLILLSVII ITGGFTLQTFNVAQESIWLLVPAWPLAAMWYISTLAETNRAPFDLTEGESELVSGFNV EYAGGPFALFFLAEYANILLMNTLSAVLFLGASHIPAFPELTALNLMTKAALLSVVFL WVRASYPRFRYDQLMHLVWKSFLPLTLALVLWHLALPIALAGLPPQL" CDS 5027..6076 /gene="NADH-2" /note="putative; NCBI gi: 463155." /product="NADH dehydrogenase subunit 2" /codon_start=1 /translation="MNPYVLTILLSSLGLGTVLTFASSHWLLAWMGLEINTLAIIPIM AQQHHPRAIEATTKYFLTQATAAAMILFASTTNAWLVGEWEIHQLSHPLATTTVMLAL ALKLGLAPVHFWLPEVLQGLELTTGLILSTWQKLAPFALMIQVAPTINSSLLVTIGLL STLVGGWGGLNQTQLRKILAYLPIAHLGWMVLILQFAPSLTLLSLSLYIVMTSSAFLT LKTNNSLTINTLATSWTKSPTLAALTALVLLSLGGLPPLSGFMPKWLILQELTKQGLP LSATLAAMTALLSLYFYLRLCYALTLTIYPNTLTATAPWRLNFTMITLPLSITTIMAL GLLPLTPAVTAMLAL" CDS 6468..8018 /transl_except=(pos:6468..6470,aa:Met) /gene="COI" /note="putative; NCBI gi: 463156." /product="cytochrome oxidase subunit 1" /codon_start=1 /translation="MAITRWFFSTNHKDIGTLYLVFGAWAGMVGTALSLLIRAELSQP GALLGDDQIYNVIVTAHAFVMIFFMVMPIMIGGFGNWLIPLMIGAPDMAFPRMNNMSF WLLPPSFLLLLSSSGVEAGAGTGWTVYPPLAGNLAHAGASVDLTIFSLHLAGISSILG AINFITTIINMKPPAISQYQTPLFVWAVLVTAVLLLLSLPVLAAGITMLLTDRNLNTT FFDPAGGGDPILYQHLFWFFSHPEVYILILPGFGMISHIVAYYSGKKEPFGYMGMVWA MMAIGLLGFIVWAHHMFTVGMDVDTRAYFTSATMIIAIPTGVKVFSWLATLHGGSIKW ETPLLWALGFIFLFTVGGLTGIVLANSSLDIVLHDTYYVVAHFHYVLSMGAVFAIMGA FVHWFPLFTGYTLHSTWTKIHFGIMFIGVNLTFFPQHFLGLAGMPRRYSDYPDAYTLW NTVSSIGSLVSLVAVIMFLFILWEAFAAKREVASIELTSTNVEWLHGCPPPYHTFEEP AFVQVQAN" CDS 8181..8871 /gene="COII" /note="putative; NCBI gi: 463157." /product="cytochrome oxidase subunit 2" /codon_start=1 /translation="MAHPSQLGFQDAASPVMEELLHFHDHALMIVLLISTLVLYIIVA MVSTKLTNMYILDSQEIEIVWTVLPAVILILIALPSLRILYLMDEINDPHLTIKAMGH QWYWSYEYTDYEDLGFDSYMVPTQDLVPGQFRLLETDHRMVVPVESPIRVLVSAEDVL HSWAVPSLGVKMDAVPGRLNQTAFIASRPGVFYGQCSEICGANHSFMPIVVEAVPLEH FEKWSTMMLEDA" CDS 8947..9114 /gene="ATPase8" /note="putative; NCBI gi: 463158." /product="adenosine triphosphatase subunit 8" /codon_start=1 /translation="MPQLNPAPWFAILVFSWLVFLTVIPPKVLGHTFTNEPTSQSTEK AKPEPWNWPWH" CDS 9105..9776 /gene="ATPase6" /note="putative; NCBI gi: 463159." /product="adenosine triphosphatase subunit 6" /codon_start=1 /translation="MTLSFFDQFMSPTYLGIPLIAVALTLPWILFPTPSARWLNNRLI TLQGWFINRFTQQLLLPLNLGGHKWAALLTSLMLFLITLNMLGLLPYTFTPTTQLSLN MGLAVPLWLATVIIGMRNQPTAALGHLLPEGTPVPLIPVLIIIETISLFIRPALGVRL TANLTAGHQLIATAAFVLLPMMPTVAILTSIVLFLLTLLEIAVAMIQAYVFVLLLSLY LQENV" CDS 9776..10561 /gene="COIII" /note="putative; NCBI gi: 463160." /product="cytochrome oxidase subunit 3" /codon_start=1 /translation="MAHQAHAYHMVDPSPWPLTGAIAALLLTSGTAVWFHFHSLTLLT LGNILLLLTMYQWWRDIIREGTFQGHHTPPVQKGLRYGMILFITSEVFFFLGFFWAFY HASLAPTPELGGCWPPAGITTLDPFEVPLLNTAVLLASGVTVTWAHHSIMEGERKQTI QALTLTILLGFYFTFLQGMEYYEAPFTIADGVYGSTFFVATGFHGLHVIIGSTFLAVC LLRQVQYHFTSEHHFGFEAAAWYWHFVDVVWLFLYVSIYWWGS" CDS 10631..10979 /gene="NADH-3" /note="putative; NCBI gi: 463161." /product="NADH dehydrogenase subunit 3" /codon_start=1 /translation="MNLITTIITITITLSAVLATISFWLPQISPDAEKLSPYECGFDP LGSARLPFSLRFFLIAILFLLFDLEIALLLPLPWGDQLHTPTLTLIWSTAVLALLTLG LIYEWTQGGLEWAE" CDS 11050..11346 /gene="NADH-4L" /note="putative; NCBI gi: 463162." /product="NADH dehydrogenase subunit 4L" /codon_start=1 /translation="MTPVHFSFTSAFILGLMGLAFHRTHLLSALLCLEGMMLSLFIAL SLWALQMEATGYSVAPMLLLAFSACEASAGLALLVATARTHGTDRLQSLNLLQC" CDS 11340..12720 /gene="NADH-4" /note="putative; NCBI gi: 463163." /product="NADH dehydrogenase subunit 4" /codon_start=1 /translation="MLKILIPTLMLFPTIWLSPAKWLWTTSIAQSLIIALASLSWLKW SSETGWSSSNLYLATDPLSTPLLVLTCWLLPLMILASQSHLSPEPLNRQRAYISLLVS LQTFLVLAFGATEIIMFYVMFEATLLPTLIIITRWGNQTERLNAGTYFLFYTLAGSLP LLVALLLMQNDNGTLSMFTLQYTQPLHLLTWGDKLWWAACLLAFLVKMPLYGVHLWLP KAHVEAPIAGSMILAAVLLKLGGYGMMRMMVMLDPLTKELAYPFIVLALWGIIMTGSI CLRQTDLKSLIAYSSVGHMGLVAGGILIQTPWGFTGAIILMIAHGLASSALFCLANTS YERTHSRTMLLARGMQMILPLMTTWWFVASLANLALPPLPNLMGELMIITSMFNWSYW TLILTGLGTLITASYSLYLFLMTQRGPLPSHIIALEPTHTREHLLIILHLIPIVLLIL KPELMWGWCF" CDS 12932..14770 /gene="NADH-5" /note="putative; NCBI gi: 463164." /product="NADH dehydrogenase subunit 5" /codon_start=1 /translation="MHPTTLILSSSLLMIFTLLIYPLITTLTPTPQHKNWALTHVKTA IKMAFLVSLLPLFVFLDQGTETIVTNWQWMNTTTFDINLSFKFDHYSIIFTPIALYVT WSILEFASWYMHADPNMNRFFKYLLLFLIAMIILVTANNMFQLFIGWEGVGIMSFLLI GWWHGRADANTAAMQAVIYNRVGDIGLILSMAWFATNLNSWEIQQMFASSKGLDLTLP LMGLILAATGKSAQFGLHPWLPSAMEGPTPVSALLHSSTMVVAGIFLLIRLHPLMEDN QTALTVCLCLGALTTLFTATCALTQNDIKKIVAFSTSSQLGLMMVTIGLNQPQLAFLH ICTHAFFKAMLFLCSGSIIHSLNDEQDIRKMGGMHNLTPSTSSCLTIGSLALTGTPFL AGFFSKDAIIEALNTSHLNAWALTLTLLATSFTAIYSLRVIFFVSMGHPRFTATAPVN ENNPSVINPIKRLAWGSIIAGLLITSNFLPTNTPVMTMPTHLKLAALLVTISGLLIAL ELASLTNKQFKLHPTLTLHNFSNMLGFFPAIIHRLTPKLNLTLGQTIASQMVDHTWFE KVGPKELFQLTCLMVTTTSNIQQGMIKTYLTLFFLSTTLAVLLTLT" CDS complement(14767..15306) /gene="NADH-6" /note="putative; NCBI gi: 463165." /product="NADH dehydrogenase subunit 6" /codon_start=1 /translation="MTYLVSLFLLGLVLGLVAVASNPAPYFAALGLVVAAGVGCGVLV GHGGSFLSLVLFLIYLGGMLVVFAYSAALAAEPFPESWGDRSVLGDRSVLGYVVVYTV GVVLVAGLFWGGWYETSWVAVDEFKEFSVLRGDTSGVALMYSHGGGMLIACAWVLLLT LFVVLELTRGLSRGALRAV" CDS 15379..16519 /gene="Cyt b" /note="putative; NCBI gi: 463166." /product="cytochrome b" /codon_start=1 /translation="MANLRKTHPLLKIANDALVDLPAPSNISVWWNFGSLLGLCLATQ ILTGLFLAMHYTSDISTAFSSVCHICRDVSYGWLIRNIHANGASFFFICIYMHIARGL YYGSYLYKETWNIGVVLLLLTMMTAFVGYVLPWGQMSFWGATVITNLLSAVPYVGGAL VQWIWGGFSVDNATLTRFFAFHFLFPFVIAAATVLHLLFLHETGSNNPAGINSDADKI SFHPYFSYKDLLGFVAMLLGLTSLALFAPNLLGDPDNFTPANPLVTPPHIKPEWYFLF AYAILRSIPNKLGGVLALLFSILVLMVVPILHTSKQRGLTFRPLTQFLFWALVADMLI LTWIGGMPVEHPFIIIGQVASVIYFTIFLVLSPLAGWAEIKALQWA" BASE COUNT 285 a 259 c 215 g 185 t 4269 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ----|----- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --caaAGGCU 661 (UGG-)U-CC U|GACUU-UA CUA-UCAGCU -C-UAAC-UG |AA-CU--UA -CAC-A-UGC 721 -AAGu----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------cuc c)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------|- gCAUUCCUGU GAGGA---UG C|CCU-Uaa- --uc-cc--- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- --(u-gcccg -----)---- 1261 ---------- ---------- --gg--ga-- --cGAGGAGC |--------- CGGCAUCA-- 1321 -GGCACGC-- -----(ccag ---------- ---------- ---------- ------)--- 1381 ---GC|---A GCCCA--CGA C|GCCUU-GC --|------- (-uaa--)-- -------GC| 1441 CACA------ ---------- ---------- -|-CCCC--( CAAG-)--GA AAcu---C-A 1501 GCA|GUG-AU AAAUAUUAAG C-CAUAAGC( ---------- ----GAAA)G CUUGA-CUU| 1561 A|-GUUA-A- GG-UUA---a ga-------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- GGGCC|-GGU 1921 -AAA-A---C UCGU-G(-CC AGCCACC-GC -GGU-UA)-U ACGAGA|--- -GAC-CCU-- 1981 AGUUG-AUAA C--------u acCGGC|GUA AAGAGUGGUU -A-ugg---- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 ------a--- --aaauauuu aauaaa--gc -----|CGAA CACCCC-CUC ----AGCC(G 2341 UCAUA)CGCA CC-------U GGGA-GCACG AAG------- ----accuac -uGC(-GAAA 2401 -)GC|a---- ----gcguuu a-----acua ug-------- ccu-gaccCC ACGAC-AGCU 2461 A-AGA---AA CAAACUGGG( AUUAGAUA-) CCCA-CUAU| -GCCU-AGC- CGUAAA-CCU 2521 U--GAUA-GA |AA|------ ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- --u(auac)a a--uU-GAUA 2701 U-C|--C|GC C-AGGG-AAC UACAAGC(-- -GCCA--)GC UUA--AAACC CAAAGGAC-U 2761 UG|GCGGUG- CCUCAGA-CC CACCUAGA|G GAGCCUGU-U |CUAGA--AC CG(AUAACCC 2821 C--------- ----)CGUUC A-ACCUCACC ACCCCUUGUU ---------- ---------- 2881 (-------uu ac-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---CGC CUA-UA|UA- 3121 |CC|-AC--C |G------UC GU-CA|G-CU UAC-|CCU(G --UGA)AGG- -----(ccc- 3181 ca-)------ U-AGU-AGCA AAA-UGGG-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- -----caaa- 3781 ---------A CCAAAA-CGU C-AGGUCGAG G|UGUA|GCG CAU------- ---------G 3841 A-G-GU-GG- GA-AGA--AA -UGGGCUACA UU--CUCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--a au---)---- ---------- ---------- UAG-AGcac- 4021 ---------- -----UACGA --AC-CA-CG CUG(------ ---------- ---------- 4081 ---------- ---------- UGAAAU---) CAGC-G--UC -C--GAAGG- -UGAAAUUUA 4141 G-C--AGUAA A-CAGAAA(- acaga-ga-- --)GUUCUCU U-GAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -ACU--GGCU 4261 CUGAGG-CG- CGCACACA-C -CGCCCGUCA C-UCU--CCC CA-------- ---------- 4321 ---------- ---------- ---------- ---------- ---------< aguucaaccu 4381 gu--c-cuuc uaacuaagaa guua-acc-g aacaa----- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- ---------A GGGG-AGG-C AAGUCGUAAC AUGGUAAG-U GUA-CC(GGA 4621 -A)GGU-GC- GCUUGGAAUA AC-------| ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- --------|| ||| // LOCUS mt.S.salar 5213 bp RNA RNA 11-JAN-191 DEFINITION Mitochondrion Salmo salar. ACCESSION No information KEYWORDS No information. SOURCE Mitochondrion Salmo salar. ORGANISM Mitochondrion Salmo salar. REFERENCE 1 (bases 1 to 16696) AUTHORS Hurst,C.D., Bartlett,S.E. and Davidson,W.S. JOURNAL No information STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: U12143 LOCUS SSMITOCH1 2841 bp DNA VRT 07-FEB-1996 DEFINITION Salmo salar mitochondrion tRNA-Phe, 12S rRNA, tRNA-Val, 16S rRNA, and tRNA-Leu genes, NADH-ubiquinone oxidoreductase subunit 1 gene, partial cds. ACCESSION U12143 NID g1181629 KEYWORDS . SEGMENT 1 of 4 SOURCE Atlantic salmon. ORGANISM Mitochondrion Salmo salar Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Actinopterygii; Neopterygii; Teleostei; Euteleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Salmo. REFERENCE 1 (bases 1 to 2841) AUTHORS Hurst,C.D., Bartlett,S.E. and Davidson,W.S. TITLE Mitochondrial DNA sequence of Atlantic salmon (Salmo salar) JOURNAL Unpublished REFERENCE 2 (bases 1 to 2841) AUTHORS Hurst,C.D. TITLE Direct Submission JOURNAL Submitted (09-JUL-1994) Carolyn D. Hurst, Norwood Laboratory, School of Chemical and Life Sciences, University of Greenwich, Wellington Street, Woolwich, London, SE18 6PF COMMENT NCBI gi: 1181629 FEATURES Location/Qualifiers source 1..2841 /clone="CH52" /mitochondrion /organism="Salmo salar" /tissue_type="liver" tRNA 1..68 /anticodon=(pos:31..33,aa:Phe) /product="tRNA-Phe" rRNA 69..1016 /product="12S rRNA" tRNA 1017..1087 /anticodon=(pos:1049..1051,aa:Val) /product="tRNA-Val" rRNA 1088..2759 /product="16S rRNA" tRNA 2760..2832 /anticodon=(pos:2794..2796,aa:Leu) /product="tRNA-Leu" CDS 2833..>2841 /note="NCBI gi: 1181634" /codon_start=1 /transl_table=2 /product="NADH-ubiquinone oxidoreductase subunit 1" /db_xref="PID:g1181634" BASE COUNT 908 a 736 c 631 g 562 t 4 others ORIGIN BASE COUNT 290 a 257 c 211 g 188 t 4267 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ----|----- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --caaAGGCU 661 (UGG-)U-CC U|GACUU-UA CUA-UCAGCU -C-UAAC-UG |AA-CU--UA -CAC-A-UGC 721 -AAGu----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------cuc c)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------|- gCAUUCCUGU GAGGA---UG C|CCU-Uaa- --uc-cc--- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- --(-ugcc-- -----)---- 1261 ---------- ---------- --gg--ga-- --cGAGGAGC |--------- CGGCAUCA-- 1321 -GGCACGC-- -----(ccaa ---------- ---------- ---------- ------)--- 1381 ---GC|---A GCCCA--AGA C|GCCUU-GC --|------- (-uaa--)-- -------GC| 1441 CACA------ ---------- ---------- -|-CCCC--( CAAG-)--GA AAcc---C-A 1501 GCA|GUG-AU AAAUAUUAAG C-CAUAAGC( ---------- ----GAAA)G CUUGA-CUU| 1561 A|-GUUA-A- AG-UUA---a ga-------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- GGGCC|-GGU 1921 -AAA-A---C UCGU-G(-CC AGCCACC-GC -GGU-UA)-U ACGAGA|--- -GGC-CCU-- 1981 AGUUG-AUAA C--------u acCGGC|GUA AAGAGUGGUU -A-CGG---- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 ------a--- -aaaauauuu aauaaa--gc -----|Cgaa cacccc-cuc ----AGCC(G 2341 UCAUA)CGCA CC-------u gggg-gcacG AAG------- ----aucuac -uAC(-GAAA 2401 -)GC|a---- ----gcuuua a-----uuau a--------- ccu-gaacCC ACGAC-AGCU 2461 A-CGA---CA CAAACUGGG( AUUAGAUAC) CCCA-CUAU| -GCCU-AGC- CGUAAA-CUU 2521 U--GAUG-GA |AA|------ ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- --c(auac)a ---acuGACA 2701 U-C|--C|GC C-AGGG-GAC UAUAAGC(-- -GCCA--)GC UUA--AAACC CAAAGGAC-U 2761 UG|GCGGUG- CCUCAGA-CC CACCUAGA|G GAGCCUGU-U |CUAGA--AC CG(AUAACCC 2821 C--------- ----)CGUUC A-ACCUCACC ACCUCUUGUU ---------- ---------- 2881 (-------uu cc-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---CGC CUA-UA|UA- 3121 |CC|-AC--C |G------UC GU-CA|G-CU UAC-|CCU(G --UGA)AGG- -----(ccu- 3181 ua-)------ u-aGUAAGCA AAA-UGGG-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ----caaaa- 3781 ---------C CCAAAA-CGU C-AGUCGGAG G|UGUA|GCG CAU------- ---------G 3841 G-G-GU-GG- GA-AGA--AA -UGGGCUACA UU--CUCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--a au---)---- ---------- ---------- UAG-AGCAC- 4021 ---------- -----UACGA --ACCAC-GC U-G(------ ---------- ---------- 4081 ---------- ---------- UGAAAC---) C-AG-C--GU -C--CAAAG- -GUGGAUUUA 4141 G-C--AGUAA A-UAGAAA(- auaga-ga-- --)GUUCUCU U-GAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -ACU--GGCU 4261 CUGAGG-CG- CGCACACA-C -CGCCCGUCA C-UCU--CCC CA-------- ---------- 4321 ---------- ---------- ---------- ---------- ---------< aguuc-aa-- 4381 uuaac-ccuu cuaacuaaga aau-uaaccg aacaaanna- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- ---------A GGGG-AGG-C AAGUCGUAAC AUGGUAAG-U GUA-CC(GGA 4621 -A)GGU-GC- ACUUGGAAUA AC-------| ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- --------|| ||| // LOCUS (13)-lobe 5213 bp RNA RNA 25-JAN-1994 DEFINITION lobe-finned fish and tetrapod clade. ACCESSION No information KEYWORDS No information. SOURCE lobe-finned fish and tetrapod clade. ORGANISM lobe-finned fish and tetrapod clade. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: DIVIDER BASE COUNT 0 a 0 c 0 g 0 t 5213 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ----|..... .......... .......... 541 .......... .......... .......... .......... .......... .......... 601 .......... .......... .......... .......... .......... .......... 661 .......-.. .......... .......... ..-....... |......... ....-..... 721 .......-.. .....|.... ........-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- ------.... .......... 841 .......... .......... .......... .......... .......... .......... 901 .......... .......... .......... .......... .......... .......... 961 .....-..|. .......... .......... .|........ -......... .....-.... 1021 .......... ....---... ..-..---.. .......... .......... .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .......... .......... .......... .......... .......... 1201 .......... .......... .......... .......... .......... .......... 1261 .......... .......... .........- .......... ..----.... ........-- 1321 .......... .......... .......... .......... .......... .......... 1381 ......---. .......... .......-.. .......... .......... .......... 1441 .......... ........-. ..-....... .......... .......... ........-. 1501 ...|...-.. .......... .......... .......... .......... .....-...| 1561 .......... .......... .......... .......... .--....... .......... 1621 .......... .......... .......... .......... .......... .......... 1681 .......... .......... .......... .......... .......... .......... 1741 .......... .......... .......... .......... .......... .......... 1801 .......... .......... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .......... .......... 1921 .......... .......-.. .......... -.......-. .......... .......... 1981 .....-.... ...--..... .......... .......... -......... .......... 2041 .......... .....----. .......... .......... .....----- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- --------.. .......... .......... .......... 2221 .......... .......... .......... .......... ........|. .......-.. 2281 .......... -......... ......--.. .-........ .......... ---....... 2341 .......... ...-...... ....-..... .......... .......... .......... 2401 ....|..... .......... .......... .......... .......... .....-.... 2461 .....--... .......... .......... .......... .......... .......... 2521 .--....-.. |......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... .......... 2701 .-..-..... .......... .......... .......... .......... .......... 2761 ..|....... .......... ........|. ........-. |......... .......... 2821 .--------- ----...... .-........ .......... .......... .......... 2881 .....---.. ..-....... .......... .......... .......... .......... 2941 .......... .......... .......... .......... .......... .......... 3001 .......... .......... .......... .......... .......... .......... 3061 .......... .......... .......... .......... .--....... ...-.....- 3121 .......--. |......... .......-.. .......... .-........ .........- 3181 .......... .-........ .......... .......... .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .......... .......... .......... 3361 .......... .......... .......... .......... .....--... .......... 3421 .......... .......... .......... .......... .......... .......... 3481 .......... ........-- --........ .......... .......... .......... 3541 .......... .......... .......... .......... .......... .......... 3601 .......... .......... .......... .......... .......... .......... 3661 .......... .......... .......... .......... .......... .......... 3721 .......... .......... .......... .......... .....-.... .......... 3781 .......... .......... .......... ......|... ...------- -------... 3841 ...-..-... ..-....... .......... ..-....... ......-... ..--...... 3901 .......... .......... .......... .......... .......... .......... 3961 .......... .......... ...-...... .......... .......... .......... 4021 ......---. .......... .-........ .-........ .......... .......... 4081 .......... .......... ......-... .......... .........- .......... 4141 .-.-...... .......... .......... .......... .-........ .......... 4201 .......... .......... .......... .......... .......... .......... 4261 .......... .......... .......... .-........ ...-...... .......... 4321 .......... ......-... .........- .......... -......... .........- 4381 .....-.... .......... ........-- ....-..... .......... .......... 4441 .......... .......... .......... .......... .......... .......... 4501 .......... .......... ...--..... ........-- .......... .......... 4561 .......... .......... ........-. .......... ........-. ...-...... 4621 -.....-... .......... .......... .......... .......... .......... 4681 .......... .......... .......... .......... .......... .......... 4741 .......... .......... .......... .......... .......... .......... 4801 .......... .......... .......... .......... .......... .......... 4861 .......... .......... .......... .......... .......... .......... 4921 .......... .......... .......... .......... .......... .......... 4981 .......... .......... .......... .......... .......... .......... 5041 .......... .......... .......... .......... .......... .......... 5101 .......... .......... .......... .......... .......... .......... 5161 .......... .......... .......... .......... ........|| ||| // LOCUS (14)-Coela 5213 bp RNA RNA 25-JAN-1994 DEFINITION Coelacanthiformes. ACCESSION No information KEYWORDS No information. SOURCE Coelacanthiformes. ORGANISM Coelacanthiformes. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: DIVIDER BASE COUNT 0 a 0 c 0 g 0 t 5213 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ----|..... .......... .......... 541 .......... .......... .......... .......... .......... .......... 601 .......... .......... .......... .......... .......... .......... 661 .......-.. .......... .......... ..-....... |......... ....-..... 721 .......-.. .....|.... ........-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- ------.... .......... 841 .......... .......... .......... .......... .......... .......... 901 .......... .......... .......... .......... .......... .......... 961 .....-..|. .......... .......... .|........ -......... .....-.... 1021 .......... ....---... ..-..---.. .......... .......... .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .......... .......... .......... .......... .......... 1201 .......... .......... .......... .......... .......... .......... 1261 .......... .......... .........- .......... ..----.... ........-- 1321 .......... .......... .......... .......... .......... .......... 1381 ......---. .......... .......-.. .......... .......... .......... 1441 .......... ........-. ..-....... .......... .......... ........-. 1501 ...|...-.. .......... .......... .......... .......... .....-...| 1561 .......... .......... .......... .......... .--....... .......... 1621 .......... .......... .......... .......... .......... .......... 1681 .......... .......... .......... .......... .......... .......... 1741 .......... .......... .......... .......... .......... .......... 1801 .......... .......... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .......... .......... 1921 .......... .......-.. .......... -.......-. .......... .......... 1981 .....-.... ...--..... .......... .......... -......... .......... 2041 .......... .....----. .......... .......... .....----- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- --------.. .......... .......... .......... 2221 .......... .......... .......... .......... ........|. .......-.. 2281 .......... -......... ......--.. .-........ .......... ---....... 2341 .......... ...-...... ....-..... .......... .......... .......... 2401 ....|..... .......... .......... .......... .......... .....-.... 2461 .....--... .......... .......... .......... .......... .......... 2521 .--....-.. |......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... .......... 2701 .-..-..... .......... .......... .......... .......... .......... 2761 ..|....... .......... ........|. ........-. |......... .......... 2821 .--------- ----...... .-........ .......... .......... .......... 2881 .....---.. ..-....... .......... .......... .......... .......... 2941 .......... .......... .......... .......... .......... .......... 3001 .......... .......... .......... .......... .......... .......... 3061 .......... .......... .......... .......... .--....... ...-.....- 3121 .......--. |......... .......-.. .......... .-........ .........- 3181 .......... .-........ .......... .......... .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .......... .......... .......... 3361 .......... .......... .......... .......... .....--... .......... 3421 .......... .......... .......... .......... .......... .......... 3481 .......... ........-- --........ .......... .......... .......... 3541 .......... .......... .......... .......... .......... .......... 3601 .......... .......... .......... .......... .......... .......... 3661 .......... .......... .......... .......... .......... .......... 3721 .......... .......... .......... .......... .....-.... .......... 3781 .......... .......... .......... ......|... ...------- -------... 3841 ...-..-... ..-....... .......... ..-....... ......-... ..--...... 3901 .......... .......... .......... .......... .......... .......... 3961 .......... .......... ...-...... .......... .......... .......... 4021 ......---. .......... .-........ .-........ .......... .......... 4081 .......... .......... ......-... .......... .........- .......... 4141 .-.-...... .......... .......... .......... .-........ .......... 4201 .......... .......... .......... .......... .......... .......... 4261 .......... .......... .......... .-........ ...-...... .......... 4321 .......... ......-... .........- .......... -......... .........- 4381 .....-.... .......... ........-- ....-..... .......... .......... 4441 .......... .......... .......... .......... .......... .......... 4501 .......... .......... ...--..... ........-- .......... .......... 4561 .......... .......... ........-. .......... ........-. ...-...... 4621 -.....-... .......... .......... .......... .......... .......... 4681 .......... .......... .......... .......... .......... .......... 4741 .......... .......... .......... .......... .......... .......... 4801 .......... .......... .......... .......... .......... .......... 4861 .......... .......... .......... .......... .......... .......... 4921 .......... .......... .......... .......... .......... .......... 4981 .......... .......... .......... .......... .......... .......... 5041 .......... .......... .......... .......... .......... .......... 5101 .......... .......... .......... .......... .......... .......... 5161 .......... .......... .......... .......... ........|| ||| // LOCUS mt.L.cha.1 5213 bp RNA RNA 11-JAN-191 DEFINITION Mitochondrion Latimeria chalumnae. ACCESSION No information KEYWORDS No information. SOURCE Mitochondrion Latimeria chalumnae. ORGANISM Mitochondrion Latimeria chalumnae. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: Z21921 ID MTLC12SRA standard; DNA; ORG; 2734 BP. XX AC Z21921; XX DT 14-JUN-1993 (Rel. 36, Created) DT 14-JUN-1993 (Rel. 36, Last updated, Version 2) XX DE L.chalumnae mitochondrion 12S and 16S rRNA genes, and tRNA-Val and DE -Leu genes. XX KW 12S ribosomal RNA; 16S ribosomal RNA; transfer RNA-Leu; KW transfer RNA-Val. XX OS Latimeria chalumnae OC Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Osteichthyes; OC Coelacanthiformes; Latimeriidae. XX OG Mitochondrion XX RN [1] RC (sites) RA Hedges S., Hass C.A., Maxson L.R.; RT "Relations of fish and tetrapods"; RL Nature 363:501-502(1993). XX RN [2] RP 1-2734 RA Hedges S.; RT ; RL Submitted (05-MAR-1993) on tape to the EMBL Data Library by: RL Hedges S., Pennsylvania State University, Biology, 208 Mueller Lab, RL University Park, PA, USA, 16802 XX FH Key Location/Qualifiers FH FT source 1..2734 FT /organism="Latimeria chalumnae" FT /mitochondrion FT rRNA 1..975 FT /product="12S rRNA" FT /citation=[1] FT tRNA 976..1042 FT /product="tRNA-Val" FT /citation=[1] FT rRNA 1043..2705 FT /product="16S rRNA" FT /citation=[1] FT tRNA 2706..2734 FT /product="tRNA-Leu" FT /citation=[1] XX SQ Sequence 2734 BP; 997 A; 676 C; 505 G; 556 T; 0 other; BASE COUNT 351 a 262 c 187 g 175 t 4238 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ----|----- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- ---aaAGGUU 661 (UGG-)U-CC C|AGCCU-UG CUA-UCAAUU ---UAAC-CA |GG-AU--UA -CAC-A-UGC 721 -AAGc----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------auc a)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------|- aCUACCCAGU GAGAA---UG C|CCC-Ugac --uu-au--- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- --(ccgucaa ag---)---- 1261 ---------- ---------- --au--aa-- --cAGGGAGU |--------- AGGUAUCA-- 1321 -GGCACAC-- -----(aaca uuaacg---- ---------- ---------- ------)--- 1381 ---CU|---A GCCCA--AGA C|ACCUU-GU --|------- (-cca--)-- -------GC| 1441 CACA------ ---------- ---------- -|-CCCC--( CAAG-)--GG AAcu---C-A 1501 GCA|GUG-AU AGACAUUGAA U-AAUAAGU( ---------- ----GAAA)A CUUGA-CUC| 1561 A|-GCCA-U- GG-UUA---c aa-------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- GGGCC|-GGU 1921 -CAA-C---U CCGU-G(-CC AGCCACC-GC -GGU-UA)-C ACGGAA|--- -GAC-CCA-- 1981 AAAUG-AUAA C------acu acCGGC|GUA AAGCGUGAUU -Aaagg---- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 ------a--c -acccaccau aaugga--gc -----|CACA aauaac-uaa ----AGCU(G 2341 UUAUA)CGCa c-------uu aaaa-a-aaU AUG------- ---cucauca -cAC(-GAAA 2401 -)GU|a---- ----acucca g---caccca aaggaac--- ccu-gaacCC ACGAA-AGCU 2461 A-AGA---AA CAAACUGGG( AUUAGAUAC) CCCA-CUAU| -GCUC-AGC- CCUAAA-CAC 2521 A--AACA-AU |UC|------ ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---(aaac)a c--aC-ACUG 2701 U-U|--C|GC C-AGGG-AAC UACAAGC(-- -GCCA--)GC UUC--AAACC CAAAGGAC-U 2761 UG|GCGGCA- CUUCAAA-CC CACCUAGA|G GAGCCUGU-U |CUAAA--AC UG(ACAACCC 2821 C--------- ----)CACCU A-ACCUCACC AUCCCUAGCC ---------- ---------- 2881 (-auu---aa ac-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGC CUA-UA|UA- 3121 |CC|-GC--C |G------UC GC-CA|G-CC CAC-|CCU(G --UGA)AGG- -----(aaa- 3181 ua-)------ C-AAUGGGCA AAA-AUAA-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ----aaaaa- 3781 ---------U UAAAAA-CGU C-AGGUCGAG G|UGUA|GCA AAU------- ---------G 3841 A-G-AU-GG- GA-AGA--AA -UGGGCUACA UU--UUCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(-aa ua---)---- ---------- ---------- UAG-AAuau- 4021 ---------- -----UACGA --A-AAA-UA C-A(------ ---------- ---------- 4081 ---------- ---------g CGAAAC-c-) U-GU-A--CU -U--UGAAG- -GAGGAUUUA 4141 G-C--AGUAA A-AGGGGA(- auaga-ga-- --)GCCCCUC U-GAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -ACC--GGCC 4261 CUGAAA-UG- CGCACACA-C -CGCCCGUCA C-UCU--CCU CA-------- ---------- 4321 ---------- ---------- ---------- ---------- ---------< cccaaaaucg 4381 gccca-u-cu uu-aauaaa- caaaaacc-- aagcauacaa gu-------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- ---------A GAGG-AGG-C AAGUCGUAAC AAGGUAAG-U GUA-CC(GGA 4621 -A)-GU-GC- ACUUGGACUA AU-------| ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- --------|| ||| // LOCUS mt.L.cha.2 5213 bp RNA RNA 02-APR-1997 DEFINITION Mitochondrion Latimeria chalumnae.; . ACCESSION U82228 KEYWORDS . SOURCE Mitochondrion Latimeria chalumnae. ORGANISM Mitochondrion Latimeria chalumnae. REFERENCE 1 (bases 1 to 16407) AUTHORS Zardoya,R. and Meyer,A. TITLE relationships among living sarcopterygians The complete nucleotide sequence of the mitochondrial genome of the coelacanth, Latimeria chalumnae and the phylogenetic JOURNAL Unpublished STANDARD No information REFERENCE 2 (bases 1 to 16407) AUTHORS Zardoya,R. TITLE Direct Submission JOURNAL Submitted (13-DEC-1996) Ecology & Evolution, State University of New York, 662 Life Sciences, Stony Brook, NY 11794-5245, USA STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: U82228 BASE COUNT 352 a 265 c 189 g 177 t 4230 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --caAAGGUU 661 (UGG-)U-CC C|AGCCU-UG CUA-UCAAUU -U-UAAC-CA |GG-AU--UA -CAC-A-UGC 721 -AAGc----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------auc a)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------|- aCUcCCCAGU GAGAA---UG C|CCC-Ugac --uu-au--- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- --(ccgucaa ag---)---- 1261 ---------- ---------- --au--aa-- --cAGGGAGU |--------- AGGUAUCA-- 1321 -GGCACAC-- -----(aaca uuaacg---- ---------- ---------- ------)--- 1381 ---CU|---A GCCCA--AGA C|ACCUU-GU --|------- (-cca--)-- -------GC| 1441 CACA------ ---------- ---------- -|-CCCC--( CAAG-)--GG AAcu---C-A 1501 GCA|GUG-AU AGACAUUGAA U-AAUAAGU( ---------- ----GAAA)A CUUGA-CUC| 1561 A|-GCCA-U- GG-UUA---c aa-------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- GGGCC|-GGU 1921 -CAA-C---U CCGU-G(-CC AGCCACC-GC -GGU-UA)-C ACGGAA|--- -GAC-CCA-- 1981 AAAUG-AUAA C------acu acCGGC|GUA AAGCGUGAUU -Aaagg---- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 ------a--c -acccaccau aaugga--gc -----|CACA aauaac-uaa ----AGCU(G 2341 UUAUA)CGCa c--------u uaaa-aaaaU AUG------- ---cucauca -cAC(-GAAA 2401 -)GU|a---- ----acucca g---caccca aaggaac--- ccu-gaacCC ACGAA-AGCU 2461 A-AGA---AA CAAACUGGG( AUUAGAUAC) CCCA-CUAU| -GCUC-AGC- CCUAAA-CAC 2521 A--AACA-AU |UC|------ ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---(aaac)a c---aCACUG 2701 U-U|--C|GC C-AGGGgAAC UACAAGC(-- -GCCA--)GC UUC--AAACC CAAAGGAc-U 2761 UG|GCGGCA- CUUCAAA-CC CACCUAGA|G GAGCCUGU-U |CUAAA--AC UG(ACAACCC 2821 C--------- ----)CACCU A-ACCUCACC AUCCCUAGCC ---------- ---------- 2881 (-auu---aa ac-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGC CUA-UA|UA- 3121 |CC|-GC--C |G------UC GC-CA|G-CC CAC-|CCU(G --UGA)AGG- -----(aaa- 3181 ua-)------ c-aAUGGGCA AAA-AUAA-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ----aaaaa- 3781 ---------U UAAAAA-CGU C-AGGUCGAG G|UGUA|GCA AAU------- ---------G 3841 A-G-AU-GG- GA-AGA--AA -UGGGCUACA UU--UUCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(-aa ua---)---- ---------- ---------- UAG-AAuau- 4021 ---------- -----UACGA --AAAAA-UA C-A(------ ---------- ---------- 4081 ---------- ---------g CGAAAC-c-) U-GU-A--CU -U--UGAAG- -GAGGaUUUA 4141 G-C--AGUAA A-AGGGGa(- auaga-ga-- --)GCCCCUC U-GAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -ACC--GGCC 4261 CUGAAA-UG- CGCACACA-C -CGCCCGUCA C-UCU--CCU CA-------- ---------- 4321 ---------- ---------- ---------- ---------- ---------< cccaaaaucg 4381 gcccc-aucu uuuaauaaac aaaaaacc-- aagcauacaa gu-------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- ---------A GAGG-AGG-C AAGUCGUAAC AAGGUAAG-U GUA-CC(GGA 4621 -A)GGU-GC- ACUUGGACUA AU-------| ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- --------|| ||| // LOCUS (14)-Dipno 5213 bp RNA RNA 25-JAN-1994 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: DIVIDER BASE COUNT 0 a 0 c 0 g 0 t 5213 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ----|..... .......... .......... 541 .......... .......... .......... .......... .......... .......... 601 .......... .......... .......... .......... .......... .......... 661 .......-.. .......... .......... ..-....... |......... ....-..... 721 .......-.. .....|.... ........-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- ------.... .......... 841 .......... .......... .......... .......... .......... .......... 901 .......... .......... .......... .......... .......... .......... 961 .....-..|. .......... .......... .|........ -......... .....-.... 1021 .......... ....---... ..-..---.. .......... .......... .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .......... .......... .......... .......... .......... 1201 .......... .......... .......... .......... .......... .......... 1261 .......... .......... .........- .......... ..----.... ........-- 1321 .......... .......... .......... .......... .......... .......... 1381 ......---. .......... .......-.. .......... .......... .......... 1441 .......... ........-. ..-....... .......... .......... ........-. 1501 ...|...-.. .......... .......... .......... .......... .....-...| 1561 .......... .......... .......... .......... .--....... .......... 1621 .......... .......... .......... .......... .......... .......... 1681 .......... .......... .......... .......... .......... .......... 1741 .......... .......... .......... .......... .......... .......... 1801 .......... .......... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .......... .......... 1921 .......... .......-.. .......... -.......-. .......... .......... 1981 .....-.... ...--..... .......... .......... -......... .......... 2041 .......... .....----. .......... .......... .....----- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- --------.. .......... .......... .......... 2221 .......... .......... .......... .......... ........|. .......-.. 2281 .......... -......... ......--.. .-........ .......... ---....... 2341 .......... ...-...... ....-..... .......... .......... .......... 2401 ....|..... .......... .......... .......... .......... .....-.... 2461 .....--... .......... .......... .......... .......... .......... 2521 .--....-.. |......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... .......... 2701 .-..-..... .......... .......... .......... .......... .......... 2761 ..|....... .......... ........|. ........-. |......... .......... 2821 .--------- ----...... .-........ .......... .......... .......... 2881 .....---.. ..-....... .......... .......... .......... .......... 2941 .......... .......... .......... .......... .......... .......... 3001 .......... .......... .......... .......... .......... .......... 3061 .......... .......... .......... .......... .--....... ...-.....- 3121 .......--. |......... .......-.. .......... .-........ .........- 3181 .......... .-........ .......... .......... .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .......... .......... .......... 3361 .......... .......... .......... .......... .....--... .......... 3421 .......... .......... .......... .......... .......... .......... 3481 .......... ........-- --........ .......... .......... .......... 3541 .......... .......... .......... .......... .......... .......... 3601 .......... .......... .......... .......... .......... .......... 3661 .......... .......... .......... .......... .......... .......... 3721 .......... .......... .......... .......... .....-.... .......... 3781 .......... .......... .......... ......|... ...------- -------... 3841 ...-..-... ..-....... .......... ..-....... ......-... ..--...... 3901 .......... .......... .......... .......... .......... .......... 3961 .......... .......... ...-...... .......... .......... .......... 4021 ......---. .......... .-........ .-........ .......... .......... 4081 .......... .......... ......-... .......... .........- .......... 4141 .-.-...... .......... .......... .......... .-........ .......... 4201 .......... .......... .......... .......... .......... .......... 4261 .......... .......... .......... .-........ ...-...... .......... 4321 .......... ......-... .........- .......... -......... .........- 4381 .....-.... .......... ........-- ....-..... .......... .......... 4441 .......... .......... .......... .......... .......... .......... 4501 .......... .......... ...--..... ........-- .......... .......... 4561 .......... .......... ........-. .......... ........-. ...-...... 4621 -.....-... .......... .......... .......... .......... .......... 4681 .......... .......... .......... .......... .......... .......... 4741 .......... .......... .......... .......... .......... .......... 4801 .......... .......... .......... .......... .......... .......... 4861 .......... .......... .......... .......... .......... .......... 4921 .......... .......... .......... .......... .......... .......... 4981 .......... .......... .......... .......... .......... .......... 5041 .......... .......... .......... .......... .......... .......... 5101 .......... .......... .......... .......... .......... .......... 5161 .......... .......... .......... .......... ........|| ||| // LOCUS mt.N.forst 5213 bp RNA RNA 11-JAN-191 DEFINITION Mitochondrion Neoceratodus forsteri. ACCESSION No information KEYWORDS No information. SOURCE Mitochondrion Neoceratodus forsteri. ORGANISM Mitochondrion Neoceratodus forsteri. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: Z21927 Z21926 ID MTNF12SRB standard; DNA; ORG; 2730 BP. XX AC Z21927; XX DT 14-JUN-1993 (Rel. 36, Created) DT 14-JUN-1993 (Rel. 36, Last updated, Version 3) XX DE N.forsteri mitochondrion 12S and 16S rRNA genes, and tRNA-Val and DE -Leu genes. XX KW 12S ribosomal RNA; 16S ribosomal RNA; transfer RNA-Leu; KW transfer RNA-Val. XX OS Neoceratodus foresteri OC Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Osteichthyes; OC Sarcopterygii; Lepidosireniformes; Ceratodidae. XX OG Mitochondrion XX RN [2] RP 1-2730 RA Hedges S.; RT ; RL Submitted (05-MAR-1993) on tape to the EMBL Data Library by: RL Hedges S., Pennsylvania State University, Biology, 208 Mueller Lab, RL University Park, PA, USA, 16802 XX RN [3] RP 1-2730 RA Hedges S., Hass C.A., Maxson L.R.; RT "Relations of fish and tetrapods"; RL Nature 363:501-502(1993). XX FH Key Location/Qualifiers FH FT source 1..2730 FT /organism="Neoceratodus foresteri" FT /mitochondrion FT rRNA 1..951 FT /product="12S rRNA" FT /citation=[1] FT tRNA 952..1022 FT /product="tRNA-Val" FT /citation=[1] FT rRNA 1023..2701 FT /product="16S rRNA" FT /citation=[1] FT tRNA 2702..2730 FT /product="tRNA-Leu" FT /citation=[1] XX SQ Sequence 2730 BP; 989 A; 633 C; 530 G; 574 T; 4 other; BASE COUNT 322 a 238 c 194 g 195 t 4264 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ----|----- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- ---aaAGGUU 661 (UGG-)U-CC U|GGCCU-UA CUA-UCAUUU -U-CAGC-UA |AA-AU--UA -CAC-A-UGC 721 -AAGu----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------auc c)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------|- gCAACCCCGU GAGAA---UG C|CCU-Uagu --ug-cc--- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- --(-cuacca -----)---- 1261 ---------- ---------- --gg--caa- --aAAGGAGC |--------- AGGCAUCA-- 1321 -GGCUCACU- -----(uuau ---------- ---------- ---------- ------)--- 1381 --AGC|-acA ACCCA--AAA C|GCCUU-GC --|------- (-uca--)-- -------GC| 1441 CACA------ ---------- ---------- -|-CCCC--( CACG-)--GG AAc----C-A 1501 GCA|GUG-AU UAACAUUGAG C-AAUAAGC( ---------- ----GAAA)G CUUGA-CUC| 1561 A|-GCCA-U- AG-CCU---u cc-------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- GGGCC|-GGU 1921 -AAA-C---C UCGU-G(-CC AGCCACC-GC -GGU-UA)-U ACGAAG|--- -GAC-CCG-- 1981 AAUUG-AUAG U-------cu a-CGGC|GUA AAGCGUGAUU -A-gau---- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 ------a--a -gacuaaaaa auuaga--gu -----|UAAA ACCCCA-UCC ----AGCC(G 2341 UCAUA)CGCA UC------C- AUGG-GCCAU AAA------- ---------- -aua(-cagc 2401 -)ua|g---- ----acucua a---acaacu agacua---- cuu-gaauUC ACGAA-AGCU 2461 A-AGA---UA CAAACUGGG( AUUAGAUAN) CCNA-CUAU| -GCUC-AGC- CAUAAA-CUU 2521 U--GACA-AG |UA|------ ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- --c(guac)a a--aG-CUUG 2701 U-C|--C|GC C-AGGG-UAC UACGAGG(-- -GCCA--)GC UUA--AAACC CAAAGGAC-U 2761 UG|GCGGUG- CCUCACA-CC CACCUAGA|G GAGCCUGU-U |CUAGA--AC CG(AUAAUCC 2821 A--------- ----)CGUUA A-ACCUCACC GCUUCUUGCC ---------- ---------- 2881 (-------ac ua-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---CGU CUA-UA|UA- 3121 |CC|-AC--C |G------UC GC-CA|G-CU UAC-|CCC(G --UGA)GGG- -----(uga- 3181 aa-)------ A-AGUAAGCA CAA-UUGG-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ----uacaa- 3781 ---------C CAAAAA-CGU C-AGGUCGAG G|UGUA|GCG AAU------- ---------G 3841 A-A-GC-GG- AA-AGA--AA -UGGGCUACA UU--UUCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--u aa---)---- ---------- ---------- AAG-AAua-- 4021 ---------- -----UACGA --AAGAC-CU A-A(------ ---------- ---------- 4081 ---------- ---------- UGAAA----) C-AA-A--GU -C--AGAAG- -GUGGAUUUA 4141 G-C--AGUAA G-AAAAAC(- caaga-au-- --)AUUUUUC U-GAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -AUU--GGCC 4261 AUGAGG-CGC CGCACACACC -GGCCCGUCA C-UCU--CCU CA-------- ---------- 4321 ---------- ---------- ---------- ---------- ---------< -auaacaau- 4381 cuaaa-cagu aaauaacuaa acauaauuaa aaua------ ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- ---------A GAGG-AGG-C AAGUCGUAAC AUGGUAAG-C GUA-CC(GGA 4621 -A)-GU--C- CGUUGGAAUA AU-------| ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- --------|| ||| // LOCUS mt.L.parad 5213 bp RNA RNA 11-JAN-191 DEFINITION Mitochondrion Lepidosiren paradoxa. ACCESSION No information KEYWORDS No information. SOURCE Mitochondrion Lepidosiren paradoxa. ORGANISM Mitochondrion Lepidosiren paradoxa. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: Z48715 LOCUS MTLPTRRNA 2606 bp DNA VRT 15-MAR-1995 DEFINITION L.paradoxa mitochondrial genes for 12S rRNA, 16S rRNA, tRNA-Val and tRNA-Leu. ACCESSION Z48715 KEYWORDS 12S ribosomal RNA; 12S rRNA gene; 16S ribosomal RNA; 16S rRNA gene; tRNA-Leu; tRNA-Val. SOURCE South American lungfish. ORGANISM Mitochondrion Lepidosiren paradoxa Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Osteichthyes; Sarcopterygii; Lepidosireniformes; Lepidosirenidae. REFERENCE 1 (bases 1 to 2606) AUTHORS Hedges,S.B., Hass,C.A. and Maxson,L.R. TITLE Relations of fish and tetrapods [letter] JOURNAL Nature 363 (6429), 501-502 (1993) MEDLINE 93281180 REMARK (sites) REFERENCE 2 (bases 1 to 2606) AUTHORS Hedges,S. TITLE Direct Submission JOURNAL Submitted (14-MAR-1995) to the EMBL/GenBank/DDBJ databases. Hedges S., Pennsylvania State University, Biology, 208 Mueller Lab, University Park, PA, USA, 16802 COMMENT NCBI gi: 732849 FEATURES Location/Qualifiers source 1..2606 /organism="Lepidosiren paradoxa" /mitochondrion rRNA 1..929 /gene="12S rRNA" /citation=[1] /product="12S ribosomal RNA" tRNA 930..997 /citation=[1] /product="tRNA-Val" rRNA 998..2577 /gene="16S rRNA" /citation=[1] /product="16S ribosomal RNA" tRNA 2578..2606 /citation=[1] /product="tRNA-Leu" BASE COUNT 923 a 506 c 501 g 675 t 1 others ORIGIN BASE COUNT 314 a 196 c 179 g 237 t 4287 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ----|----- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- ---aaAGGUU 661 (UGG-)U-CC U|AGCCU-UA CUG-UCAAUU -U-UUAC-UG |AU-CU--UA -UAC-A-UGC 721 -AAGu----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------cuc c)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------|- gCACACCUGU GAAAA---UG C|UCU-Uaa- --ga-ac--- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- --(c-aagcg -----)---- 1261 ---------- ---------- --gu--uu-- --uAAGAAGC |--------- CGGCAUCA-- 1321 -GACACA--- -----(aaau ---------- ---------- ---------- ------)--- 1381 ----U|---A GUCCA--AGA C|GCCUU-GC --|------- (-aaa--)-- -------GC| 1441 CACA------ ---------- ---------- -|-CCCC--( -AAG-)--GG AAA----C-A 1501 GCA|GUA-AU UAAUCUUAGG C-AAUAAGU( ---------- ----GAAA)A CUUGA-CCU| 1561 A|-GUUA-C- AG-UUA---u ga-------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- AAAUC|-GGC 1921 -CAA-U---C UCGU-G(-CC AGCCGCC-GC -GGU-UA)-U ACGAGA|--- -GAU-UUU-- 1981 -AUUG-AUAA A--------- uuCGGC|GUA UAGGGUGAUU -A-gga---- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 ------u--- -auacuuaau uuuaaa--au -----|UUAA CUUUAG-CCA ----AGCU(G 2341 UUAUA)CGCU UC------C- GCUA-AUAAG AAA------- ---------- ---a(-ucau 2401 -)u-|----- ----auuuua a---uuaaag aguuau---- ucu-gaccUC ACGAA-AGCC 2461 A-AGA---AA CAAACUAGG( AUUAGAUAC) CCUA-CUAU| -GCUU-GGC- UAUAAA-CUA 2521 U--AGUG-AA |UU|------ ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- --u-uuac-a u--cA-UUCA 2701 C-U|--C|GC C-AGAG-GAC UACUAGC(-- -ACAA--)GC UAA--AAACU CAAAGGAC-U 2761 UG|GCGGUG- CCUCAAA-CC CACCUAGA|G GAGCCUGU-C |CUAAA--AC CG(AUAAUCC 2821 A--------- ----)CGUUU U-ACCUAACC ACUUUUUGCC ---------- ---------- 2881 (-------aa uu-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGC CUA-UA|UA- 3121 |CC|-GC--C |G------UC GC-CA|G-CC AAC-|CCC(G --UGA)GAG- -----(aaa- 3181 ua-)------ a-aCUAGGCA AAA-Uuaa-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ----cuuag- 3781 ---------u uaAAUA-CGU C-AGGUCGAG G|UGUA|GCA UAU------- ---------G 3841 A-A-GU-GG- -A-AGA--GA -UGGGCUACA UU--UUCU-- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--u gu---)---- ---------- ---------- -AG-AAua-- 4021 ---------- -----UACGA --AUAGC-UA A-A(------ ---------- ---------- 4081 ---------- ---------- UGAAA----) U-AA-A--GC -U--GGAAG- -GUGGAUUUA 4141 G-C--AGUAA A-GAAAAA(- ucaua-au-- --)AUUUUCC U-GAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -AUU--GGCC 4261 AUGAGG-CG- CGCACACA-C -CGCCCGUCA C-UCU--CCU CA-------- ---------- 4321 ---------- ---------- ---------- ---------- ---------< -acagccca- 4381 aaaac-auua uuuaauauaa aauagcuaca a--------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- ---------A GAGG-AGG-C AAGUCGUAAC AUGGUAAG-U GUA-CC(GGA 4621 -A)GGU-GC- GCUUGGAGU- ---------| ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- --------|| ||| // LOCUS mt.P.dollo 5213 bp RNA RNA 11-JAN-191 DEFINITION Mitochondrion Protopterus dolloi. ACCESSION No information KEYWORDS No information. SOURCE Mitochondrion Protopterus dolloi. ORGANISM Mitochondrion Protopterus dolloi. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: L42813 LOCUS PRRMTCG 16646 bp DNA VRT 11-JAN-1996 DEFINITION Protopterus dolloi complete mitochondrial genome. ACCESSION L42813 NID g1161203 KEYWORDS 12S ribosomal RNA; 16S ribosomal RNA; NADH dehydrogenase; complete genome; mitochondrial DNA; transfer RNA. SOURCE Mitochondrion Protopterus dolloi adult eggs DNA. ORGANISM Mitochondrion Protopterus dolloi Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Dipnoi; Lepidosireniformes; Protopteridae; Protopterus. REFERENCE 1 (bases 1 to 16646) AUTHORS Zardoya,R. and Meyer,A. TITLE The complete nucleotide sequence of the mitochondrial genome of the lungfish (Protopterus dolloi), supports its phylogenetic position as a close relative of land vertebrates JOURNAL Unpublished (1995) COMMENT NCBI gi: 1161203 FEATURES Location/Qualifiers source 1..16646 /organism="Mitochondrion Protopterus dolloi" /mitochondrion /dev_stage="adult" /sequenced_mol="DNA" /tissue_type="eggs" tRNA 1..67 /gene="tRNA-Phe" /note="putative" /anticodon=(pos:31..33,aa:Phe) /product="transfer RNA-Phe" rRNA 68..1000 /gene="12S rRNA" /note="putative" /product="12S ribosomal RNA" tRNA 1001..1072 /gene="tRNA-Val" /note="putative" /anticodon=(pos:1034..1036,aa:Val) /product="transfer RNA-Val" rRNA 1073..2663 /gene="16S rRNA" /note="putative" /product="16S ribosomal RNA" tRNA 2664..2738 /gene="tRNA-Leu(UUR)" /note="putative" /anticodon=(pos:2699..2701,aa:Leu) /product="transfer RNA-Leu" CDS 2739..3707 /note="NCBI gi: 1161204" /codon_start=1 /transl_table=2 /product="NADH dehydrogenase subunit 1" /db_xref="PID:g1161204" /translation="MNPLPTITNSLMYIVPILLAVAFLTLVERKIIGYMQHRKGPNVV GPYGLLHPIADGVKLFIKEPVRPTASSTTLFILAPTLALTLALLIWTPLPMPFPMANV NLTLLFIMAVSSLSVYSILTSGWASNSKYALIGALRAIAQTISYEVSLGLILLAAIIF MGNFSMLTFSTGQEAIWLIIPAWPLATMWYVSTLAETNRSPFDLTEGESELASGFNVE YAGGPLASFYLAEYANIMLMNTISVIIFLGDSLNLLLPEMMTSLLMFKTTALSLVFLW VRASYPRFRYDQLMHLIWKNFLPLTLSLIILHISAPLAFTGLPPQF" tRNA 3706..3777 /gene="tRNA-Ile" /note="putative" /anticodon=(pos:3738..3740,aa:Ile) /product="transfer RNA-Ile" tRNA complement(3775..3845) /gene="tRNA-Gln" /note="putative" /anticodon=(pos:3811..3813,aa:Gln) /product="transfer RNA-Gln" tRNA 3845..3913 /gene="tRNA-Met" /note="putative" /anticodon=(pos:3875..3877,aa:Met) /product="transfer RNA-Met" CDS 3914..4942 /note="putative; NCBI gi: 1161205" /codon_start=1 /transl_table=2 /product="NADH dehydrogenase subunit 2" /db_xref="PID:g1161205" /translation="MSPTILSVLIMSLGLGTTVTFMSSNWLLAWIGLEINTMSIIPLM SQQHHPRATEAATKYFLAQAAASIMILFSSMINAWVAGEWNITNLLSPTSATLITLAL AIKIGLAPMHFWLPEVLQGVTLMTGAILVTWQKLAPFILLYQISDTVNPTLLLVLALS TLTGGWSGLNQTQLRKILAYSSIAHMGWMTMILPFAPNLALLNLMIYITLTLPLFFTL NICSSTSIPSLALNWTKSPLLMTMLLITLLSLGGLPPLTGFMPKWLILQELTNNDLYI FATAAALSALLSLYFYLRLCYTTSLTTSPNTLNNNHWRPNAGTYQILSMILIFATALL PLTPGLIM" tRNA 4945..5014 /gene="tRNA-Trp" /note="putative" /anticodon=(pos:4976..4978,aa:Trp) /product="transfer RNA-Trp" tRNA complement(5015..5083) /gene="tRNA-Ala" /note="putative" /anticodon=(pos:5051..5053,aa:Ala) /product="transfer RNA-Ala" tRNA complement(5084..5156) /gene="tRNA-Asn" /note="putative" /anticodon=(pos:5121..5123,aa:Asn) /product="transfer RNA-Asn" tRNA complement(5182..5248) /gene="tRNA-Cys" /note="putative" /anticodon=(pos:5218..5220,aa:Cys) /product="transfer RNA-Cys" tRNA complement(5249..5317) /gene="tRNA-Tyr" /note="putative" /anticodon=(pos:5284..5286,aa:Tyr) /product="transfer RNA-Tyr" CDS 5319..6866 /note="putative; NCBI gi: 1161206" /codon_start=1 /transl_table=2 /product="cytochrome oxidase subunit 1" /db_xref="PID:g1161206" /translation="MTLTRWLFSTNHKDIGTLYMVFGAWAGMVGTALSLLIRAELSQP GALLGDDQVYNVLVTAHAFVMIFFMVMPIMIGGFGNWLIPLMIGAPDMAFPRMNNMSF WLLPPSFLLLLAGSGVEAGAGTGWTVYPPLASNLAHAGASVDLTIFSLHLAGVSSILG SINFITTIINMKPPAASQYQTPLFIWSVMITTVLLVLSLPVLAAGITMLLTDRNLNTT FFDPAGGGDPILYQHLFWFFGHPEVYILILPGFGMISHIVGFYSGKKEPFGYMGMVWA MMAIGLLGFIVWAHHMFTVGMDVDTRAYFTSATMIIAIPTGVKVFSWLATLHGGAIKW ETPLLWALGFIFLFTVGGLTGIVLANSSLDIMLHDTYYVVAHFHYVLSMGAVFAIMGG LMHWFPLMTGYTLHDTWTKIHFGVMFLGVNLTFFPQHFLGLAGMPRRYSDYPDAYTLW NTLSSVGSLISLVAVILLLFIIWEAFASKREVNSIELIYTNVEWMHGCPPPYHTFEEP AFVQIQR" tRNA complement(6871..6941) /gene="tRNA-Ser(UCN)" /note="putative" /anticodon=(pos:6907..6909,aa:Ser) /product="transfer RNA-Ser" tRNA 6944..7012 /gene="tRNA-Asp" /note="putative" /anticodon=(pos:6974..6976,aa:Asp) /product="transfer RNA-Asp" CDS 7015..7705 /note="putative; NCBI gi: 1161207" /codon_start=1 /transl_table=2 /product="cytochrome oxidase subunit 2" /db_xref="PID:g1161207" /translation="MAHPSQLGLQDAASPVMEELIHFHDHALMIVFLISTLVLYIIVA MVSTKFTNKFILDSQEIEIVWTILPAVILIMIALPSLRILYLMDEINDPHLTVKAVGH QWYWSYEYSDYETLNFDSYMTPTQDLTPGQFRLLETDYRMVVPMESPIRVLITADDVI HSWAVPALGIKMDAVPGRLNQASFITARPGMFYGQCSEIWGANHSFMPIVVEAAPLQH FENWSSLMLEKA" tRNA 7706..7774 /gene="tRNA-Lys" /note="putative" /anticodon=(pos:7736..7738,aa:Lys) /product="transfer RNA-Lys" CDS 7776..7943 /note="putative; NCBI gi: 1161208" /codon_start=1 /transl_table=2 /product="adenosine triphosphate subunit 8" /db_xref="PID:g1161208" /translation="MPQLNPGPWFNILLISWLTFLLILLPKILSHKTNNCPTPQSQDK LFLPPWNWPWL" CDS 7934..8615 /note="'putative'; NCBI gi: 1161209" /codon_start=1 /transl_table=2 /product="'Adenosine Triphosphatase subunit 6'" /db_xref="PID:g1161209" /translation="MTLSFFDQFLSPTILGIPLIFLSLILPWLLYPTAPNRWLTSRLL TLQNWLILRTAAQLMAPINQQGQKWAVILTSLMLFLISINLLGLLPYTFTPTTQLSMN MGWGVPMWLATVLIGLRNQPTTSIGHLLPEGTPNLLIPALVVIETISLFIRPLALGVR LTANLTGGHLLMQLIATAAFFGASVMPTIALLPYTILFLLTILELAGAMIQAYVCALL LTLYLQENI" CDS 8616..9399 /note="putative; NCBI gi: 1161210" /codon_start=1 /transl_table=2 /product="cytochrome oxidase subunit 3" /db_xref="PID:g1161210" /translation="MAHQAHASHMGDPSPWPLTGATAALLMTSGLAIWFHYHTVILLT IGLILTLLTMYQWWRDVVREGTFQGHHTAPVQKGLRYGMILFITSEVLFFFGFFWAFY HSSLAPTPELGGCWPPTGIVPLDPFEVPLLNTAVLLASGVTVTWAHHSLMEGNRKETT QALIFTVLLGLYFTALQAMEYYEAPFTIADSVYGATFFVATGFHGLHVIIGSTFLLIC LLRQAQYHFTSNHHFGFEASAWYWHFVDVVWLCLYVSIYWWGS" tRNA 9400..9469 /gene="tRNA-Gly" /note="putative" /anticodon=(pos:9431..9433,aa:Gly) /product="transfer RNA-Gly" CDS 9471..9816 /note="putative; NCBI gi: 1161211" /codon_start=1 /transl_table=2 /product="NADH dehydrogenase subunit 3" /db_xref="PID:g1161211" /translation="MNLLIVMIISTALPIILMLLGFWLPNLNPDNEKVSPYECGFDPL GSARLPFSLKFFLVAILFLLFDLEIAILLPLPWALQYDTPTTAFLIALLILILLTLGL IYEWLQGGLEWAE" tRNA 9817..9885 /gene="tRNA-Arg" /note="putative" /anticodon=(pos:9847..9849,aa:Arg) /product="transfer RNA-Arg" CDS 9886..10182 /note="putative; NCBI gi: 1161212" /codon_start=1 /transl_table=2 /product="NADH dehydrogenase subunit 4L" /db_xref="PID:g1161212" /translation="MTPTLFSIVSAFYSSLMGLALNRSHLILALLCLEGAMLSVFLML SMWSAFQGPYSIAGTPLILLALAACEAGTGLALMVATARTHGTDHLKSLNLLQC" CDS 10176..11559 /note="putative; NCBI gi: 1161213" /codon_start=1 /transl_table=2 /product="NADH dehydrogenase subunit 4" /db_xref="PID:g1161213" /translation="MLKILIPTIMLIPTTWLISLPLLWTMPLIYTTLIACASLSFLKW NSISGWSFINLYMTIDSISAPLLVLSCWLLPLMILASQNHMLHEPLQRQRVYLILLMI LQTFLLLTFMASELIMFYVMFEATLIPTLIIITRWGNQAERLQAGTYFLFYTLAGSLP LLIALLLINKNMMTSSIVLLNFFSTDFSSNSYASTLWWAASLFAFLVKMPLYGVHLWL PKAHVEAPIAGSMVLAAILLKLGGYGMLRMIPILPPLAKPLIYPFIILALWGIIMTGM ICLRQSDLKSLIAYSSVSHMGLVISGILIQTPWGLTGAITLMIAHGLTSSLLFCLANT NYERTHSRTMLLARGMQTILPLFGLWWLLANLTNLALPPSINLMGELPIIMATFNWAG LTILLTGIGTLITATYSLYMYMMTQHGQISPQTTMMEPAHTREHLLISLHLIPSFLLI MKPELIWGWFC" tRNA 11560..11628 /gene="tRNA-His" /note="putative" /anticodon=(pos:11590..11592,aa:His) /product="transfer RNA-His" tRNA 11629..11697 /gene="tRNA-Ser(AGY)" /note="putative" /anticodon=(pos:11655..11657,aa:Ser) /product="transfer RNA-Ser" tRNA 11698..11766 /gene="tRNA-Leu(CUN)" /note="putative" /anticodon=(pos:11728..11730,aa:Leu) /product="transfer RNA-Leu" CDS 11767..13602 /note="putative; NCBI gi: 1161214" /codon_start=1 /transl_table=2 /product="NADH dehydrogenase subunit 5" /db_xref="PID:g1161214" /translation="MTQQSVMLSSSLLIFFILLAPLALALVPSLITPHWHKFYAKSAV KLAFFISLLPLFLFMDQGIEIVSTNYQWMAINSFTFNIAFKFDFLSITFMSIALFVTW SILDFAAWYMHEDPYINQFFKYLLLFLTAMMVLTSANNLFQLFIGWEGVGIMSFLLIG WWYGRADANTAALQAVLYNRIGDIGLILAISWFTTNFNTLDIQQLFILNTNESSIIPL LGLILAATGKSAQFGLHPWLPAAMEGPTPVSALLHSSTMVVAGIFLLLRLHPLLQNNE TALTLCLLLGAITTVFTATCALTQNDIKKIVAFSTSSQLGLMMVTIGLNQPLLAFLHI CTHAFFKAMLFLCSGSIIHNLNNEQDIRKMGGLNMALPMTTSCLLIGSLALSGGPFLG GFFSKDAIIEAMNSSFLNAWALTWTLIATSFTAAYSLRIIFYVSMNFPRYPALTPILE AQQASTPIMRLAIGSVVAGFLLILNIPPPPPQVMTMPTSAKLAAIGVTIVGLFTAAEL SNITNKQLKTFPYLTPYNFSNMLAYFQSTTHRLFPTLNLKWAQLLATHLIDVIWLEKS GAKSSMKINTTFSTFITNSQQGMIKTYLTLFFMSTATFLMFLLLN" CDS complement(13591..14103) /note="putative; NCBI gi: 1161215" /codon_start=1 /transl_table=2 /product="NADH dehydrogenase subunit 6" /db_xref="PID:g1161215" /translation="MSFIFFTLLVGFLVSLIGVASNPAPYFAALGLVFGAGIGCGILI WLGNSFLSLILFLIYLGGMLVVFGYSAALAAEPYPGGWEDWSVLLYSLLLLGAGVGIG WAVVGGWDVFDSASFLGGTILGELSGVGGMYWCGGFILVLVGWSLLLALFVVLEVTRG GVRGAMRPIE" tRNA complement(14104..14172) /gene="tRNA-Glu" /note="putative" /anticodon=(pos:14140..14142,aa:Glu) /product="transfer RNA-Glu" CDS 14175..15318 /note="putative; NCBI gi: 1161216" /codon_start=1 /transl_table=2 /product="cytochrome b" /db_xref="PID:g1161216" /translation="MATNIRKTHPLLKIVNNSLIDLPTPSNISAWWNFGSLLGFCLIT QILTGLFLAMHYTADTSTAFSSIAHIARDVNYGWLLRNIHANGASMFFICIYIHIGRG IYYGSFLYTETWNIGVVLFLLTMMTAFVGYVLPWGQMSFWGATVITNLLSAVPYLGDT LVQWIWGGFSVDNATLTRFFAFHFLLPFIISAMTAAHFLFLHETGSNNPTGLNSNLDK ISFHPYFTMKDLLGFLMLASFLCLLALFSPNLLGDPENFTPANPLVTPTHIKPEWYFL FAYAILRSIPNKLGGVLALMASILILFIIPFLHRAKQRTMSYRPLSQFMFWLLTADML ILTWIGGQPVEHPFILIGQIASATYFLLFLLLFPLITSLENKLLYKY" tRNA 15319..15390 /gene="tRNA-Thr" /note="putative" /anticodon=(pos:15350..15352,aa:Thr) /product="transfer RNA-Thr" tRNA complement(15393..15462) /gene="tRNA-Pro" /note="putative" /anticodon=(pos:15429..15431,aa:Pro) /product="transfer RNA-Pro" D-loop 15463..16646 /note="control region" BASE COUNT 4800 a 4406 c 2616 g 4824 t ORIGIN BASE COUNT 297 a 234 c 195 g 207 t 4280 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ----|----- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --cacAGGUU 661 (UGG-)U-CC U|GGCCU-UA AUG-UCAGCU -U-UAAC-UA |AA-CU--UA -UAC-ACUGC 721 CAAGU----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------ccc c)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------|- gCGCCCCAGU GAAAA---UG C|CCU-Cac- --ac-gc--- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- --(c-aguag -----)---- 1261 ---------- ---------- --gu--gu-- --aGAGGAGC |--------- UGGCAUCA-- 1321 -GGCCCAC-- -----(acua a--------- ---------- ---------- ------)--- 1381 ---GU|---A GCCCA--AGA C|GCCUU-GC --|------- (-aac--)-- -------GC| 1441 CACA------ ---------- ---------- -|-CCCC--( -AAG-)--GG ACA----C-A 1501 GCA|GUA-AU UAAAAUUGGA C-UAUAAGU( ---------- ----GUAA)A CUUGA-UCC| 1561 A|-GCCA-U- GG-UUA---a aua------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- AAGUU|-GGC 1921 -CAA-C---C UCGU-G(-CC AGCCGCC-GC -GGU-UA)-C ACGAGG|--- -AAC-UUA-- 1981 AGUUG-AUGC C--------- ucCGGC|GUA UAGGAUGAUU -A-AGA---- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 ------g--- --gaacuuuu acuaaa--au -----|CAAA uaUUGG-CCC ----UGCU(G 2341 UUAUA)CGCG CU------C- GCCA-ACUAG AAA------- ---------- --cu(-caa- 2401 -)a-|----- ----auuuuu a---acuaac aguaca---- ucu-gaacUC AUGAA-AGUC 2461 A-GGA---AA CAAACUAGG( AUUAGAUAC) CCUA-CUAU| -GCCU-GAC- CCUAAA-CUA 2521 U--GACA-AG |UC|------ ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- uaa(cuac)a u--AA-CUUG 2701 C-C|--C|GC C-A-GG-AAC UACAAGC(-- -CCAA--)GC UUA--AAACC CAAAGGAC-U 2761 UG|GCGGUG- CCUCACA-CC CACCUAGA|G GAGCCUGU-U |CUAGA--AC CG(AUAAUCC 2821 A--------- ----)CGUUU U-ACCCAACC UUCCCUAGCA ---------- ---------- 2881 (--------u uu-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGC CUA-UA|UA- 3121 |CC|-GC--C |G------UC GC-CA|G-CC AAC-|CCC(C --UGA)GGG- -----(uag- 3181 ac-)------ u-aGUUGGCA GAA-UAGA-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ----uaaca- 3781 ---------U CUAGCA-CGU C-AGGUCGAG G|UGUA|GCA CAU------- ---------G 3841 A-G-AA-GG- -A-AGA--AA -UGGGCUACA UU--UUCU-- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--a gu---)---- ---------- ---------- -AG-AAAA-- 4021 ---------- -----CACGG --ACAAU-CC C-A(------ ---------- ---------- 4081 ---------- ---------- UGAAAC---) U-GG-G--AU -U--CUAAG- -CUGGAUUUA 4141 G-U--AGUAA G-AGAAAA(- UAAGA-AU-- --)AUUUUUC U-GAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -GCC--GGCC 4261 AUGAGG-CG- CGCACACA-C -CGCCCGUCA C-UCU--CCU CA-------- ---------- 4321 ---------- ---------- ---------- ---------- ---------< -acaaucgua 4381 aacga-uaaa uaauuaauuu agauaaaaa- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- ---------A GAGG-AGG-C AAGUCGUAAC AUGGUAAG-U GUA-CC(GGA 4621 -A)GGU-GU- ACUUGGUUU- ---------| ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- --------|| ||| // LOCUS mt.Prot.sp 5213 bp RNA RNA 11-JAN-191 DEFINITION Mitochondrion Protopterus sp.. ACCESSION No information KEYWORDS No information. SOURCE Mitochondrion Protopterus sp. ORGANISM Mitochondrion Protopterus sp. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: Z21923 ID MTPS12SRA standard; DNA; ORG; 2621 BP. XX AC Z21923; XX DT 14-JUN-1993 (Rel. 36, Created) DT 14-JUN-1993 (Rel. 36, Last updated, Version 2) XX DE Protopterus sp. mitochondrion 12S and 16S rRNA genes, and tRNA-Val DE and -Leu genes. XX KW 12S ribosomal RNA; 16S ribosomal RNA; transfer RNA-Leu; KW transfer RNA-Val. XX OS Protopterus sp. OC Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Osteichthyes; OC Sarcopterygii; Lepidosireniformes. XX OG Mitochondrion XX RN [1] RC (sites) RA Hedges S., Hass C.A., Maxson L.R.; RT "The closest living relative of tetrapods indicated by RT slow-evolving mitochondrial genes"; RL Nature 0:0-0(1993). XX RN [2] RP 1-2621 RA Hedges S.; RT ; RL Submitted (05-MAR-1993) on tape to the EMBL Data Library by: RL Hedges S., Pennsylvania State University, Biology, 208 Mueller Lab, RL University Park, PA, USA, 16802 XX RN [3] RP 1-2621 RA Hedges S., Hass C.A., Maxson L.R.; RT "Relations of fish and tetrapods"; RL Nature 363:501-502(1993). XX FH Key Location/Qualifiers FH FT source 1..2621 FT /organism="Protopterus sp." FT /mitochondrion FT rRNA 1..930 FT /product="12S rRNA" FT /citation=[1] FT tRNA 931..1002 FT /product="tRNA-Val" FT /citation=[1] FT rRNA 1003..2592 FT /product="16S rRNA" FT /citation=[1] FT tRNA 2593..2621 FT /product="tRNA-Leu" FT /citation=[1] XX SQ Sequence 2621 BP; 858 A; 596 C; 534 G; 631 T; 2 other; BASE COUNT 297 a 233 c 194 g 206 t 4283 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ----|----- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- ---acAGGUU 661 (UGG-)U-CC U|GGCCU-UA AUG-UCAGCU -U-UAAC-UA |aa-CUuaua -CAC---UGC 721 cAAGu----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------ccc c)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------|- gCGCCCCAGU GAAAA---UG C|CCU-Cac- --ac-gc--- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- --(c-aguag -----)---- 1261 ---------- ---------- --gu--gu-- --aGAGGAGC |--------- uGGCAUCA-- 1321 -GGCCCAC-- -----(acua a--------- ---------- ---------- ------)--- 1381 ---GU|---A GCCCA--AGA C|GCCUU-GC --|------- (-aac--)-- -------GC| 1441 CACA------ ---------- ---------- -|-CCCC--( -AAG-)--GG ACA----C-A 1501 GCA|GUA-AU UAAAAUUGGA C-UAUAAGU( ---------- ----GUAA)A CUUGA-UCC| 1561 A|-GCCA-U- GG-UUA---a aua------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- AAGUU|-GGC 1921 -CAA-C---C UCGU-G(-CC AGCCGCC-GC -GGU-UA)-C ACGAGG|--- -AAC-UUA-- 1981 AGUUG-AUGC C--------- ucCGGC|GUA UAGGAUGAUU -A-aga---- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 ------g--- --gaacuuuu acuaaa--au -----|CAAA uaUUGG-CCC ----uGCU(G 2341 UUAUA)CGCG CU------C- GCCA-ACUAG AAA------- ---------- --cu(-caaa 2401 -)a-|----- ----uuuuua a---cuaaca guaca----- ucu-gaacUC AUGAA-AGUC 2461 A-GGA---AA CAAACUAGG( AUUAGAUAC) CCUA-CUAU| -GCCU-GAC- CCUAAA-CUA 2521 U--GACA-AG |UC|------ ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- uaa(cuac)a u--aA-CUUG 2701 C-C|--C|GC C-A-GG-AAC UACAAGC(-- -CCAA--)GC UUA--AAACC CAAAGGAC-U 2761 UG|GCGGUG- CCUCACA-CC CACCUAGA|G GAGCCUGU-U |CUAGA--AC CG(AUAAUCC 2821 A--------- ----)CGUUU U-ACCCAACC UUCCCUAGCA ---------- ---------- 2881 (--------u uu-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGC CUA-UA|UA- 3121 |CC|-GC--C |G------UC GC-CA|G-CC AAC-|CCC(C --UGA)GGA- -----(gac- 3181 ---)------ U-AGUUGGCA GAA-UAGA-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ----uaaca- 3781 ---------U CUAGCA-CGU C-AGGUCGAG G|UGUA|GCA CAU------- ---------G 3841 A-G-AA-GG- -A-AGA--AA -UGGGCUACA UU--UUCU-- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--a gu---)---- ---------- ---------- -AG-AAaa-- 4021 ---------- -----CACGG --ACAAU-CC C-A(------ ---------- ---------- 4081 ---------- ---------- UGAAAC---) U-GG-G--AU -U--CUAAG- -CUGGAUUUA 4141 G-U--AGUAA G-AGAAAA(- uaaga-au-- --)AUUUUUC U-GAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -GCC--GGCC 4261 AUGAGG-CG- CGCACACA-C -CGCCCGUCA C-UCU--CCU CA-------- ---------- 4321 ---------- ---------- ---------- ---------- ---------< -acaaucgu- 4381 aaacg-auaa auaauuaauu uagauaaaaa ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- ---------A GAGG-AGG-C AAGUCGUAAC AUGGUAAG-U GUA-CC(GGA 4621 -A)GGU-GU- ACUUGGUUU- ---------| ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- --------|| ||| // LOCUS (14)-Tetra 5213 bp RNA RNA 25-JAN-1994 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: DIVIDER BASE COUNT 0 a 0 c 0 g 0 t 5213 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ----|..... .......... .......... 541 .......... .......... .......... .......... .......... .......... 601 .......... .......... .......... .......... .......... .......... 661 .......-.. .......... .......... ..-....... |......... ....-..... 721 .......-.. .....|.... ........-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- ------.... .......... 841 .......... .......... .......... .......... .......... .......... 901 .......... .......... .......... .......... .......... .......... 961 .....-..|. .......... .......... .|........ -......... .....-.... 1021 .......... ....---... ..-..---.. .......... .......... .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .......... .......... .......... .......... .......... 1201 .......... .......... .......... .......... .......... .......... 1261 .......... .......... .........- .......... ..----.... ........-- 1321 .......... .......... .......... .......... .......... .......... 1381 ......---. .......... .......-.. .......... .......... .......... 1441 .......... ........-. ..-....... .......... .......... ........-. 1501 ...|...-.. .......... .......... .......... .......... .....-...| 1561 .......... .......... .......... .......... .--....... .......... 1621 .......... .......... .......... .......... .......... .......... 1681 .......... .......... .......... .......... .......... .......... 1741 .......... .......... .......... .......... .......... .......... 1801 .......... .......... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .......... .......... 1921 .......... .......-.. .......... -.......-. .......... .......... 1981 .....-.... ...--..... .......... .......... -......... .......... 2041 .......... .....----. .......... .......... .....----- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- --------.. .......... .......... .......... 2221 .......... .......... .......... .......... ........|. .......-.. 2281 .......... -......... ......--.. .-........ .......... ---....... 2341 .......... ...-...... ....-..... .......... .......... .......... 2401 ....|..... .......... .......... .......... .......... .....-.... 2461 .....--... .......... .......... .......... .......... .......... 2521 .--....-.. |......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... .......... 2701 .-..-..... .......... .......... .......... .......... .......... 2761 ..|....... .......... ........|. ........-. |......... .......... 2821 .--------- ----...... .-........ .......... .......... .......... 2881 .....---.. ..-....... .......... .......... .......... .......... 2941 .......... .......... .......... .......... .......... .......... 3001 .......... .......... .......... .......... .......... .......... 3061 .......... .......... .......... .......... .--....... ...-.....- 3121 .......--. |......... .......-.. .......... .-........ .........- 3181 .......... .-........ .......... .......... .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .......... .......... .......... 3361 .......... .......... .......... .......... .....--... .......... 3421 .......... .......... .......... .......... .......... .......... 3481 .......... ........-- --........ .......... .......... .......... 3541 .......... .......... .......... .......... .......... .......... 3601 .......... .......... .......... .......... .......... .......... 3661 .......... .......... .......... .......... .......... .......... 3721 .......... .......... .......... .......... .....-.... .......... 3781 .......... .......... .......... ......|... ...------- -------... 3841 ...-..-... ..-....... .......... ..-....... ......-... ..--...... 3901 .......... .......... .......... .......... .......... .......... 3961 .......... .......... ...-...... .......... .......... .......... 4021 ......---. .......... .-........ .-........ .......... .......... 4081 .......... .......... ......-... .......... .........- .......... 4141 .-.-...... .......... .......... .......... .-........ .......... 4201 .......... .......... .......... .......... .......... .......... 4261 .......... .......... .......... .-........ ...-...... .......... 4321 .......... ......-... .........- .......... -......... .........- 4381 .....-.... .......... ........-- ....-..... .......... .......... 4441 .......... .......... .......... .......... .......... .......... 4501 .......... .......... ...--..... ........-- .......... .......... 4561 .......... .......... ........-. .......... ........-. ...-...... 4621 -.....-... .......... .......... .......... .......... .......... 4681 .......... .......... .......... .......... .......... .......... 4741 .......... .......... .......... .......... .......... .......... 4801 .......... .......... .......... .......... .......... .......... 4861 .......... .......... .......... .......... .......... .......... 4921 .......... .......... .......... .......... .......... .......... 4981 .......... .......... .......... .......... .......... .......... 5041 .......... .......... .......... .......... .......... .......... 5101 .......... .......... .......... .......... .......... .......... 5161 .......... .......... .......... .......... ........|| ||| // LOCUS (15)-Amnio 5213 bp RNA RNA 25-JAN-1994 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: DIVIDER BASE COUNT 0 a 0 c 0 g 0 t 5213 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ----|..... .......... .......... 541 .......... .......... .......... .......... .......... .......... 601 .......... .......... .......... .......... .......... .......... 661 .......-.. .......... .......... ..-....... |......... ....-..... 721 .......-.. .....|.... ........-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- ------.... .......... 841 .......... .......... .......... .......... .......... .......... 901 .......... .......... .......... .......... .......... .......... 961 .....-..|. .......... .......... .|........ -......... .....-.... 1021 .......... ....---... ..-..---.. .......... .......... .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .......... .......... .......... .......... .......... 1201 .......... .......... .......... .......... .......... .......... 1261 .......... .......... .........- .......... ..----.... ........-- 1321 .......... .......... .......... .......... .......... .......... 1381 ......---. .......... .......-.. .......... .......... .......... 1441 .......... ........-. ..-....... .......... .......... ........-. 1501 ...|...-.. .......... .......... .......... .......... .....-...| 1561 .......... .......... .......... .......... .--....... .......... 1621 .......... .......... .......... .......... .......... .......... 1681 .......... .......... .......... .......... .......... .......... 1741 .......... .......... .......... .......... .......... .......... 1801 .......... .......... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .......... .......... 1921 .......... .......-.. .......... -.......-. .......... .......... 1981 .....-.... ...--..... .......... .......... -......... .......... 2041 .......... .....----. .......... .......... .....----- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- --------.. .......... .......... .......... 2221 .......... .......... .......... .......... ........|. .......-.. 2281 .......... -......... ......--.. .-........ .......... ---....... 2341 .......... ...-...... ....-..... .......... .......... .......... 2401 ....|..... .......... .......... .......... .......... .....-.... 2461 .....--... .......... .......... .......... .......... .......... 2521 .--....-.. |......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... .......... 2701 .-..-..... .......... .......... .......... .......... .......... 2761 ..|....... .......... ........|. ........-. |......... .......... 2821 .--------- ----...... .-........ .......... .......... .......... 2881 .....---.. ..-....... .......... .......... .......... .......... 2941 .......... .......... .......... .......... .......... .......... 3001 .......... .......... .......... .......... .......... .......... 3061 .......... .......... .......... .......... .--....... ...-.....- 3121 .......--. |......... .......-.. .......... .-........ .........- 3181 .......... .-........ .......... .......... .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .......... .......... .......... 3361 .......... .......... .......... .......... .....--... .......... 3421 .......... .......... .......... .......... .......... .......... 3481 .......... ........-- --........ .......... .......... .......... 3541 .......... .......... .......... .......... .......... .......... 3601 .......... .......... .......... .......... .......... .......... 3661 .......... .......... .......... .......... .......... .......... 3721 .......... .......... .......... .......... .....-.... .......... 3781 .......... .......... .......... ......|... ...------- -------... 3841 ...-..-... ..-....... .......... ..-....... ......-... ..--...... 3901 .......... .......... .......... .......... .......... .......... 3961 .......... .......... ...-...... .......... .......... .......... 4021 ......---. .......... .-........ .-........ .......... .......... 4081 .......... .......... ......-... .......... .........- .......... 4141 .-.-...... .......... .......... .......... .-........ .......... 4201 .......... .......... .......... .......... .......... .......... 4261 .......... .......... .......... .-........ ...-...... .......... 4321 .......... ......-... .........- .......... -......... .........- 4381 .....-.... .......... ........-- ....-..... .......... .......... 4441 .......... .......... .......... .......... .......... .......... 4501 .......... .......... ...--..... ........-- .......... .......... 4561 .......... .......... ........-. .......... ........-. ...-...... 4621 -.....-... .......... .......... .......... .......... .......... 4681 .......... .......... .......... .......... .......... .......... 4741 .......... .......... .......... .......... .......... .......... 4801 .......... .......... .......... .......... .......... .......... 4861 .......... .......... .......... .......... .......... .......... 4921 .......... .......... .......... .......... .......... .......... 4981 .......... .......... .......... .......... .......... .......... 5041 .......... .......... .......... .......... .......... .......... 5101 .......... .......... .......... .......... .......... .......... 5161 .......... .......... .......... .......... ........|| ||| // LOCUS (16)-Mamma 5213 bp RNA RNA 25-JAN-1994 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: DIVIDER BASE COUNT 0 a 0 c 0 g 0 t 5213 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ----|..... .......... .......... 541 .......... .......... .......... .......... .......... .......... 601 .......... .......... .......... .......... .......... .......... 661 .......-.. .......... .......... ..-....... |......... ....-..... 721 .......-.. .....|.... ........-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- ------.... .......... 841 .......... .......... .......... .......... .......... .......... 901 .......... .......... .......... .......... .......... .......... 961 .....-..|. .......... .......... .|........ -......... .....-.... 1021 .......... ....---... ..-..---.. .......... .......... .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .......... .......... .......... .......... .......... 1201 .......... .......... .......... .......... .......... .......... 1261 .......... .......... .........- .......... ..----.... ........-- 1321 .......... .......... .......... .......... .......... .......... 1381 ......---. .......... .......-.. .......... .......... .......... 1441 .......... ........-. ..-....... .......... .......... ........-. 1501 ...|...-.. .......... .......... .......... .......... .....-...| 1561 .......... .......... .......... .......... .--....... .......... 1621 .......... .......... .......... .......... .......... .......... 1681 .......... .......... .......... .......... .......... .......... 1741 .......... .......... .......... .......... .......... .......... 1801 .......... .......... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .......... .......... 1921 .......... .......-.. .......... -.......-. .......... .......... 1981 .....-.... ...--..... .......... .......... -......... .......... 2041 .......... .....----. .......... .......... .....----- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- --------.. .......... .......... .......... 2221 .......... .......... .......... .......... ........|. .......-.. 2281 .......... -......... ......--.. .-........ .......... ---....... 2341 .......... ...-...... ....-..... .......... .......... .......... 2401 ....|..... .......... .......... .......... .......... .....-.... 2461 .....--... .......... .......... .......... .......... .......... 2521 .--....-.. |......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... .......... 2701 .-..-..... .......... .......... .......... .......... .......... 2761 ..|....... .......... ........|. ........-. |......... .......... 2821 .--------- ----...... .-........ .......... .......... .......... 2881 .....---.. ..-....... .......... .......... .......... .......... 2941 .......... .......... .......... .......... .......... .......... 3001 .......... .......... .......... .......... .......... .......... 3061 .......... .......... .......... .......... .--....... ...-.....- 3121 .......--. |......... .......-.. .......... .-........ .........- 3181 .......... .-........ .......... .......... .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .......... .......... .......... 3361 .......... .......... .......... .......... .....--... .......... 3421 .......... .......... .......... .......... .......... .......... 3481 .......... ........-- --........ .......... .......... .......... 3541 .......... .......... .......... .......... .......... .......... 3601 .......... .......... .......... .......... .......... .......... 3661 .......... .......... .......... .......... .......... .......... 3721 .......... .......... .......... .......... .....-.... .......... 3781 .......... .......... .......... ......|... ...------- -------... 3841 ...-..-... ..-....... .......... ..-....... ......-... ..--...... 3901 .......... .......... .......... .......... .......... .......... 3961 .......... .......... ...-...... .......... .......... .......... 4021 ......---. .......... .-........ .-........ .......... .......... 4081 .......... .......... ......-... .......... .........- .......... 4141 .-.-...... .......... .......... .......... .-........ .......... 4201 .......... .......... .......... .......... .......... .......... 4261 .......... .......... .......... .-........ ...-...... .......... 4321 .......... ......-... .........- .......... -......... .........- 4381 .....-.... .......... ........-- ....-..... .......... .......... 4441 .......... .......... .......... .......... .......... .......... 4501 .......... .......... ...--..... ........-- .......... .......... 4561 .......... .......... ........-. .......... ........-. ...-...... 4621 -.....-... .......... .......... .......... .......... .......... 4681 .......... .......... .......... .......... .......... .......... 4741 .......... .......... .......... .......... .......... .......... 4801 .......... .......... .......... .......... .......... .......... 4861 .......... .......... .......... .......... .......... .......... 4921 .......... .......... .......... .......... .......... .......... 4981 .......... .......... .......... .......... .......... .......... 5041 .......... .......... .......... .......... .......... .......... 5101 .......... .......... .......... .......... .......... .......... 5161 .......... .......... .......... .......... ........|| ||| // LOCUS (17)-Proto 5213 bp RNA RNA 25-JAN-1994 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: DIVIDER BASE COUNT 0 a 0 c 0 g 0 t 5213 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ----|..... .......... .......... 541 .......... .......... .......... .......... .......... .......... 601 .......... .......... .......... .......... .......... .......... 661 .......-.. .......... .......... ..-....... |......... ....-..... 721 .......-.. .....|.... ........-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- ------.... .......... 841 .......... .......... .......... .......... .......... .......... 901 .......... .......... .......... .......... .......... .......... 961 .....-..|. .......... .......... .|........ -......... .....-.... 1021 .......... ....---... ..-..---.. .......... .......... .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .......... .......... .......... .......... .......... 1201 .......... .......... .......... .......... .......... .......... 1261 .......... .......... .........- .......... ..----.... ........-- 1321 .......... .......... .......... .......... .......... .......... 1381 ......---. .......... .......-.. .......... .......... .......... 1441 .......... ........-. ..-....... .......... .......... ........-. 1501 ...|...-.. .......... .......... .......... .......... .....-...| 1561 .......... .......... .......... .......... .--....... .......... 1621 .......... .......... .......... .......... .......... .......... 1681 .......... .......... .......... .......... .......... .......... 1741 .......... .......... .......... .......... .......... .......... 1801 .......... .......... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .......... .......... 1921 .......... .......-.. .......... -.......-. .......... .......... 1981 .....-.... ...--..... .......... .......... -......... .......... 2041 .......... .....----. .......... .......... .....----- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- --------.. .......... .......... .......... 2221 .......... .......... .......... .......... ........|. .......-.. 2281 .......... -......... ......--.. .-........ .......... ---....... 2341 .......... ...-...... ....-..... .......... .......... .......... 2401 ....|..... .......... .......... .......... .......... .....-.... 2461 .....--... .......... .......... .......... .......... .......... 2521 .--....-.. |......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... .......... 2701 .-..-..... .......... .......... .......... .......... .......... 2761 ..|....... .......... ........|. ........-. |......... .......... 2821 .--------- ----...... .-........ .......... .......... .......... 2881 .....---.. ..-....... .......... .......... .......... .......... 2941 .......... .......... .......... .......... .......... .......... 3001 .......... .......... .......... .......... .......... .......... 3061 .......... .......... .......... .......... .--....... ...-.....- 3121 .......--. |......... .......-.. .......... .-........ .........- 3181 .......... .-........ .......... .......... .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .......... .......... .......... 3361 .......... .......... .......... .......... .....--... .......... 3421 .......... .......... .......... .......... .......... .......... 3481 .......... ........-- --........ .......... .......... .......... 3541 .......... .......... .......... .......... .......... .......... 3601 .......... .......... .......... .......... .......... .......... 3661 .......... .......... .......... .......... .......... .......... 3721 .......... .......... .......... .......... .....-.... .......... 3781 .......... .......... .......... ......|... ...------- -------... 3841 ...-..-... ..-....... .......... ..-....... ......-... ..--...... 3901 .......... .......... .......... .......... .......... .......... 3961 .......... .......... ...-...... .......... .......... .......... 4021 ......---. .......... .-........ .-........ .......... .......... 4081 .......... .......... ......-... .......... .........- .......... 4141 .-.-...... .......... .......... .......... .-........ .......... 4201 .......... .......... .......... .......... .......... .......... 4261 .......... .......... .......... .-........ ...-...... .......... 4321 .......... ......-... .........- .......... -......... .........- 4381 .....-.... .......... ........-- ....-..... .......... .......... 4441 .......... .......... .......... .......... .......... .......... 4501 .......... .......... ...--..... ........-- .......... .......... 4561 .......... .......... ........-. .......... ........-. ...-...... 4621 -.....-... .......... .......... .......... .......... .......... 4681 .......... .......... .......... .......... .......... .......... 4741 .......... .......... .......... .......... .......... .......... 4801 .......... .......... .......... .......... .......... .......... 4861 .......... .......... .......... .......... .......... .......... 4921 .......... .......... .......... .......... .......... .......... 4981 .......... .......... .......... .......... .......... .......... 5041 .......... .......... .......... .......... .......... .......... 5101 .......... .......... .......... .......... .......... .......... 5161 .......... .......... .......... .......... ........|| ||| // LOCUS mt.O.anati 5213 bp RNA RNA 11-JAN-191 DEFINITION Ornithorhychus anatinus. ACCESSION No information KEYWORDS No information. SOURCE Ornithorhychus anatinus. ORGANISM Ornithorhychus anatinus. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: U33498 + X83427 LOCUS OAU33498 944 bp DNA MAM 16-NOV-1995 DEFINITION Ornithorhynchus anatinus 12S rRNA gene, mitochondrial gene encoding mitochondrial rRNA, complete sequence. ACCESSION U33498 KEYWORDS . SOURCE duckbill platypus. ORGANISM Mitochondrion Ornithorhynchus anatinus Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Monotremata; Ornithorhynchidae; Ornithorhynchus. REFERENCE 1 (bases 1 to 944) AUTHORS Springer,M.S., Hollar,L.J. and Burk,A. TITLE Compensatory substitutions and the evolution of the mitochondrial 12S rRNA gene in mammals JOURNAL Mol. Biol. Evol. 12 (1995) In press REFERENCE 2 (bases 1 to 944) AUTHORS Burk,A. TITLE Direct Submission JOURNAL Submitted (09-AUG-1995) Angela Burk, University of California, Biology, Riverside, CA 92521, USA COMMENT NCBI gi: 1065404 FEATURES Location/Qualifiers source 1..944 /mitochondrion /organism="Ornithorhynchus anatinus" rRNA 1..944 /product="12S rRNA" BASE COUNT 344 a 210 c 168 g 222 t ORIGIN BASE COUNT 344 a 210 c 168 g 222 t 4269 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ----|----- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --uaaAGGUU 661 (UGG-)U-CC U|AGCCU-UA CUG-UUAGAU -U-UGAU-UA |GA-UU--UA -UAC-A-UGC 721 -AAGu----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------auc c)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------|- gCAACCCAGU GAGAA---UA C|CCU-aaaa --ac-uc--- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- --(-----uu aac--)---- 1261 ---------- ---------- --aa--guu- a-gaAGGAGU |--------- aGAUAUCA-- 1321 -GGCACA--- -----(cuaa ag-------- ---------- ---------- ------)--- 1381 ----u|---A GCCCA--CAA C|AUCUU-GC --|------- (-ccua-)-- -------GC| 1441 CACA------ ---------- ---------- -|-CCCC--( CACG-)--GG ACA----C-A 1501 GCA|GUA-AU AGAAAUUAGU C-AAUAAAC( ---------- ----GCAA)G UUUGA-ACA| 1561 A|-GUCA-U- AA-UCAAUAA ---------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- GAGUC|-GGU 1921 -AAA-U---U UCGU-G(-CC AGCCACC-GC -GGU-CA)-U ACGAUU|--- -GAC-UCA-- 1981 ACCUA-ACAA A--------U AACGGU|GUA AAACGUGUUU -A-AAA---- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 ---------- -acuuaaacu aauaag--au -----|uaaa guagaa-cua ----AACU(G 2341 UGAUA)AGUC AU-------a guua-auacu aaa------- ----gccauc -UAC(-GAAA 2401 -)GU|g---- ----aucuua gacua----- ---------- auu-gaauAC ACGAU-AGCU 2461 A-AGG---UA CAAACUGGG( AUUAGAUAC) CCCA-CUAU| -GCUU-AGC- CCUAAA-CUC 2521 A--AGUC-GU |UU|------ ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- -aa(uaac)a a----AACUA 2701 C-U|--C|AC C-AGAG-AAC UACUAGC(-- -AACA--)GC UUA--AAACU CAAAGGAC-U 2761 UG|GCGGUG- CUUCA---CC CCUCUAGA|G GAGCCUGU-U |CUAUA--AU CG(AUAAACC 2821 C--------- ----)CGAUA C-ACCUCACC AUCUUUUGCC ---------- ---------- 2881 (-------ac ua-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---UGU CUA-UA|UA- 3121 |CC|-GC--C |A------UC GU-CA|G-CC AAC-|CCU(A --AAA)AGG- -----(aac- 3181 aa-)------ A-AGUAGGCG UAA-UCAU-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ----uuuuc- 3781 ---------A UAAAAA-CGU U-AGGUCAAG G|UGUA|GCC UAU------- ---------A 3841 A-G-AU-GG- -A-AGA--AA -UGGGCUACA UU--UUCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--c au---)---- ---------- ---------- UAG-AAcau- 4021 ---------- ------ACGA --AAaac-uc u-a(------ ---------- ---------- 4081 ---------- ---------- UGAAAC---) u-ag-a--gu -a--UUAAG- -GAGGAUUUA 4141 G-U--AGUAA G-CCAAGA(- auaga-ga-- --)GCUUGAC U-GAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -CUG--GGCA 4261 AUGAAG-CA- CGCACACA-C -CGCCCGUCA C-CCU--CCU C--------- ---------- 4321 ---------- ---------- ---------- ---------- ---------< --aaucaag- 4381 caaca-caaa cauuccuaaa aucccaacgc uuuucaa--- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- ---------- GAGG-AGA-U AAGUCGUAAC AAGGUAAG-C AUA-CC(GGA 4621 -A)GGU-GU- GCUUGGAAUA UC-------| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS (17)-Theri 5213 bp RNA RNA 25-JAN-1994 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: DIVIDER BASE COUNT 0 a 0 c 0 g 0 t 5213 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ----|..... .......... .......... 541 .......... .......... .......... .......... .......... .......... 601 .......... .......... .......... .......... .......... .......... 661 .......-.. .......... .......... ..-....... |......... ....-..... 721 .......-.. .....|.... ........-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- ------.... .......... 841 .......... .......... .......... .......... .......... .......... 901 .......... .......... .......... .......... .......... .......... 961 .....-..|. .......... .......... .|........ -......... .....-.... 1021 .......... ....---... ..-..---.. .......... .......... .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .......... .......... .......... .......... .......... 1201 .......... .......... .......... .......... .......... .......... 1261 .......... .......... .........- .......... ..----.... ........-- 1321 .......... .......... .......... .......... .......... .......... 1381 ......---. .......... .......-.. .......... .......... .......... 1441 .......... ........-. ..-....... .......... .......... ........-. 1501 ...|...-.. .......... .......... .......... .......... .....-...| 1561 .......... .......... .......... .......... .--....... .......... 1621 .......... .......... .......... .......... .......... .......... 1681 .......... .......... .......... .......... .......... .......... 1741 .......... .......... .......... .......... .......... .......... 1801 .......... .......... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .......... .......... 1921 .......... .......-.. .......... -.......-. .......... .......... 1981 .....-.... ...--..... .......... .......... -......... .......... 2041 .......... .....----. .......... .......... .....----- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- --------.. .......... .......... .......... 2221 .......... .......... .......... .......... ........|. .......-.. 2281 .......... -......... ......--.. .-........ .......... ---....... 2341 .......... ...-...... ....-..... .......... .......... .......... 2401 ....|..... .......... .......... .......... .......... .....-.... 2461 .....--... .......... .......... .......... .......... .......... 2521 .--....-.. |......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... .......... 2701 .-..-..... .......... .......... .......... .......... .......... 2761 ..|....... .......... ........|. ........-. |......... .......... 2821 .--------- ----...... .-........ .......... .......... .......... 2881 .....---.. ..-....... .......... .......... .......... .......... 2941 .......... .......... .......... .......... .......... .......... 3001 .......... .......... .......... .......... .......... .......... 3061 .......... .......... .......... .......... .--....... ...-.....- 3121 .......--. |......... .......-.. .......... .-........ .........- 3181 .......... .-........ .......... .......... .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .......... .......... .......... 3361 .......... .......... .......... .......... .....--... .......... 3421 .......... .......... .......... .......... .......... .......... 3481 .......... ........-- --........ .......... .......... .......... 3541 .......... .......... .......... .......... .......... .......... 3601 .......... .......... .......... .......... .......... .......... 3661 .......... .......... .......... .......... .......... .......... 3721 .......... .......... .......... .......... .....-.... .......... 3781 .......... .......... .......... ......|... ...------- -------... 3841 ...-..-... ..-....... .......... ..-....... ......-... ..--...... 3901 .......... .......... .......... .......... .......... .......... 3961 .......... .......... ...-...... .......... .......... .......... 4021 ......---. .......... .-........ .-........ .......... .......... 4081 .......... .......... ......-... .......... .........- .......... 4141 .-.-...... .......... .......... .......... .-........ .......... 4201 .......... .......... .......... .......... .......... .......... 4261 .......... .......... .......... .-........ ...-...... .......... 4321 .......... ......-... .........- .......... -......... .........- 4381 .....-.... .......... ........-- ....-..... .......... .......... 4441 .......... .......... .......... .......... .......... .......... 4501 .......... .......... ...--..... ........-- .......... .......... 4561 .......... .......... ........-. .......... ........-. ...-...... 4621 -.....-... .......... .......... .......... .......... .......... 4681 .......... .......... .......... .......... .......... .......... 4741 .......... .......... .......... .......... .......... .......... 4801 .......... .......... .......... .......... .......... .......... 4861 .......... .......... .......... .......... .......... .......... 4921 .......... .......... .......... .......... .......... .......... 4981 .......... .......... .......... .......... .......... .......... 5041 .......... .......... .......... .......... .......... .......... 5101 .......... .......... .......... .......... .......... .......... 5161 .......... .......... .......... .......... ........|| ||| // LOCUS (18)-Euthe 5213 bp RNA RNA 25-JAN-1994 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: DIVIDER BASE COUNT 0 a 0 c 0 g 0 t 5213 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ----|..... .......... .......... 541 .......... .......... .......... .......... .......... .......... 601 .......... .......... .......... .......... .......... .......... 661 .......-.. .......... .......... ..-....... |......... ....-..... 721 .......-.. .....|.... ........-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- ------.... .......... 841 .......... .......... .......... .......... .......... .......... 901 .......... .......... .......... .......... .......... .......... 961 .....-..|. .......... .......... .|........ -......... .....-.... 1021 .......... ....---... ..-..---.. .......... .......... .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .......... .......... .......... .......... .......... 1201 .......... .......... .......... .......... .......... .......... 1261 .......... .......... .........- .......... ..----.... ........-- 1321 .......... .......... .......... .......... .......... .......... 1381 ......---. .......... .......-.. .......... .......... .......... 1441 .......... ........-. ..-....... .......... .......... ........-. 1501 ...|...-.. .......... .......... .......... .......... .....-...| 1561 .......... .......... .......... .......... .--....... .......... 1621 .......... .......... .......... .......... .......... .......... 1681 .......... .......... .......... .......... .......... .......... 1741 .......... .......... .......... .......... .......... .......... 1801 .......... .......... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .......... .......... 1921 .......... .......-.. .......... -.......-. .......... .......... 1981 .....-.... ...--..... .......... .......... -......... .......... 2041 .......... .....----. .......... .......... .....----- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- --------.. .......... .......... .......... 2221 .......... .......... .......... .......... ........|. .......-.. 2281 .......... -......... ......--.. .-........ .......... ---....... 2341 .......... ...-...... ....-..... .......... .......... .......... 2401 ....|..... .......... .......... .......... .......... .....-.... 2461 .....--... .......... .......... .......... .......... .......... 2521 .--....-.. |......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... .......... 2701 .-..-..... .......... .......... .......... .......... .......... 2761 ..|....... .......... ........|. ........-. |......... .......... 2821 .--------- ----...... .-........ .......... .......... .......... 2881 .....---.. ..-....... .......... .......... .......... .......... 2941 .......... .......... .......... .......... .......... .......... 3001 .......... .......... .......... .......... .......... .......... 3061 .......... .......... .......... .......... .--....... ...-.....- 3121 .......--. |......... .......-.. .......... .-........ .........- 3181 .......... .-........ .......... .......... .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .......... .......... .......... 3361 .......... .......... .......... .......... .....--... .......... 3421 .......... .......... .......... .......... .......... .......... 3481 .......... ........-- --........ .......... .......... .......... 3541 .......... .......... .......... .......... .......... .......... 3601 .......... .......... .......... .......... .......... .......... 3661 .......... .......... .......... .......... .......... .......... 3721 .......... .......... .......... .......... .....-.... .......... 3781 .......... .......... .......... ......|... ...------- -------... 3841 ...-..-... ..-....... .......... ..-....... ......-... ..--...... 3901 .......... .......... .......... .......... .......... .......... 3961 .......... .......... ...-...... .......... .......... .......... 4021 ......---. .......... .-........ .-........ .......... .......... 4081 .......... .......... ......-... .......... .........- .......... 4141 .-.-...... .......... .......... .......... .-........ .......... 4201 .......... .......... .......... .......... .......... .......... 4261 .......... .......... .......... .-........ ...-...... .......... 4321 .......... ......-... .........- .......... -......... .........- 4381 .....-.... .......... ........-- ....-..... .......... .......... 4441 .......... .......... .......... .......... .......... .......... 4501 .......... .......... ...--..... ........-- .......... .......... 4561 .......... .......... ........-. .......... ........-. ...-...... 4621 -.....-... .......... .......... .......... .......... .......... 4681 .......... .......... .......... .......... .......... .......... 4741 .......... .......... .......... .......... .......... .......... 4801 .......... .......... .......... .......... .......... .......... 4861 .......... .......... .......... .......... .......... .......... 4921 .......... .......... .......... .......... .......... .......... 4981 .......... .......... .......... .......... .......... .......... 5041 .......... .......... .......... .......... .......... .......... 5101 .......... .......... .......... .......... .......... .......... 5161 .......... .......... .......... .......... ........|| ||| // LOCUS (19)-Artio 5213 bp RNA RNA 25-JAN-1994 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: DIVIDER BASE COUNT 0 a 0 c 0 g 0 t 5213 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ----|..... .......... .......... 541 .......... .......... .......... .......... .......... .......... 601 .......... .......... .......... .......... .......... .......... 661 .......-.. .......... .......... ..-....... |......... ....-..... 721 .......-.. .....|.... ........-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- ------.... .......... 841 .......... .......... .......... .......... .......... .......... 901 .......... .......... .......... .......... .......... .......... 961 .....-..|. .......... .......... .|........ -......... .....-.... 1021 .......... ....---... ..-..---.. .......... .......... .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .......... .......... .......... .......... .......... 1201 .......... .......... .......... .......... .......... .......... 1261 .......... .......... .........- .......... ..----.... ........-- 1321 .......... .......... .......... .......... .......... .......... 1381 ......---. .......... .......-.. .......... .......... .......... 1441 .......... ........-. ..-....... .......... .......... ........-. 1501 ...|...-.. .......... .......... .......... .......... .....-...| 1561 .......... .......... .......... .......... .--....... .......... 1621 .......... .......... .......... .......... .......... .......... 1681 .......... .......... .......... .......... .......... .......... 1741 .......... .......... .......... .......... .......... .......... 1801 .......... .......... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .......... .......... 1921 .......... .......-.. .......... -.......-. .......... .......... 1981 .....-.... ...--..... .......... .......... -......... .......... 2041 .......... .....----. .......... .......... .....----- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- --------.. .......... .......... .......... 2221 .......... .......... .......... .......... ........|. .......-.. 2281 .......... -......... ......--.. .-........ .......... ---....... 2341 .......... ...-...... ....-..... .......... .......... .......... 2401 ....|..... .......... .......... .......... .......... .....-.... 2461 .....--... .......... .......... .......... .......... .......... 2521 .--....-.. |......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... .......... 2701 .-..-..... .......... .......... .......... .......... .......... 2761 ..|....... .......... ........|. ........-. |......... .......... 2821 .--------- ----...... .-........ .......... .......... .......... 2881 .....---.. ..-....... .......... .......... .......... .......... 2941 .......... .......... .......... .......... .......... .......... 3001 .......... .......... .......... .......... .......... .......... 3061 .......... .......... .......... .......... .--....... ...-.....- 3121 .......--. |......... .......-.. .......... .-........ .........- 3181 .......... .-........ .......... .......... .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .......... .......... .......... 3361 .......... .......... .......... .......... .....--... .......... 3421 .......... .......... .......... .......... .......... .......... 3481 .......... ........-- --........ .......... .......... .......... 3541 .......... .......... .......... .......... .......... .......... 3601 .......... .......... .......... .......... .......... .......... 3661 .......... .......... .......... .......... .......... .......... 3721 .......... .......... .......... .......... .....-.... .......... 3781 .......... .......... .......... ......|... ...------- -------... 3841 ...-..-... ..-....... .......... ..-....... ......-... ..--...... 3901 .......... .......... .......... .......... .......... .......... 3961 .......... .......... ...-...... .......... .......... .......... 4021 ......---. .......... .-........ .-........ .......... .......... 4081 .......... .......... ......-... .......... .........- .......... 4141 .-.-...... .......... .......... .......... .-........ .......... 4201 .......... .......... .......... .......... .......... .......... 4261 .......... .......... .......... .-........ ...-...... .......... 4321 .......... ......-... .........- .......... -......... .........- 4381 .....-.... .......... ........-- ....-..... .......... .......... 4441 .......... .......... .......... .......... .......... .......... 4501 .......... .......... ...--..... ........-- .......... .......... 4561 .......... .......... ........-. .......... ........-. ...-...... 4621 -.....-... .......... .......... .......... .......... .......... 4681 .......... .......... .......... .......... .......... .......... 4741 .......... .......... .......... .......... .......... .......... 4801 .......... .......... .......... .......... .......... .......... 4861 .......... .......... .......... .......... .......... .......... 4921 .......... .......... .......... .......... .......... .......... 4981 .......... .......... .......... .......... .......... .......... 5041 .......... .......... .......... .......... .......... .......... 5101 .......... .......... .......... .......... .......... .......... 5161 .......... .......... .......... .......... ........|| ||| // LOCUS mt.A.melam 5213 bp RNA RNA 11-JAN-191 DEFINITION Mitochondrion Aepyceros melampus. ACCESSION No information KEYWORDS No information. SOURCE Mitochondrion Aepyceros melampus. ORGANISM Mitochondrion Aepyceros melampus. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: M86496 DEFINITION Aepyceros melampus mitochondrial 12S and 16S ribosomal RNA genes, and Phe-, Val-, and Leu-tRNA genes. SOURCE Mitochondrion Aepyceros melampus (chromosome Mitochondrion Aepyceros melampus) liver DNA. ORGANISM Mitochondrion Aepyceros melampus Eukaryota; Animalia; Chordata; Vertebrata; Mammalia; Theria; Eutheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Antilopinae; Aepycerotini. REFERENCE 1 (bases 1 to 2680) AUTHORS Allard,M.W., Miyamoto,M.M., Jarecki,L., Kraus,F. and Tennant,M.R. TITLE DNA systematics and evolution of the artiodactyl family Bovidae JOURNAL Proc. Natl. Acad. Sci. U.S.A. 89, 3972-3976 (1992) FEATURES Location/Qualifiers tRNA 1..68 /product="transfer RNA-Phe" /gene="Phe-tRNA" rRNA 69..1023 /product="12S ribosomal RNA" /gene="12S rRNA" tRNA 1024..1089 /product="transfer RNA-Val" /gene="Val-tRNA" rRNA 1090..2661 /product="16S ribosomal RNA" /gene="16S rRNA" tRNA 2662..>2680 /product="transfer RNA-Leu" /gene="Leu-tRNA" BASE COUNT 346 a 217 c 175 g 217 t 4258 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ----|----- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --uacAGGUU 661 (UGG-)U-CC U|AGCCU-UC CCG-UUGACU -C-CCAA-UA |AA-CU--UA -CAC-A-UGC 721 -AAGc----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------auc u)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------|- aCACCCCGGU GAGAA---UG C|CCU-Cuga --au-c---- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- --(--accaa -----)---- 1261 ---------- ---------- ---g--acu- a-aGAGGAGC |--------- gGGUAUCA-- 1321 -AGCACAC-- -----(acuu ---------- ---------- ---------- ------)--- 1381 ---GU|---A GCUCA--UGA C|ACCUU-GC --|------- (-uua--)-- -------AC| 1441 CACA------ ---------- ---------- -|-CCCC--( CACG-)--GG AGa----C-A 1501 GCA|GUG-AC AAAAAUUAAG C-CAUAAAC( ---------- ----GAAA)G UUUGA-CUA| 1561 A|-GUUA-U- AU-UGAcua- ---------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- GGGUU|-GGU 1921 -AAA-U---U UCGU-G(-CC AGCCACC-GC -GGU-CA)-U ACGAUU|--- -AAC-CCA-- 1981 AGUUA-ACGG G-------aa uaCGGC|GUA AAACGUGUUU -A-agc---- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 ------a--- --uuacacua aauaga--gu -----|UAAA ucCUAA-UUA ----AACU(G 2341 UAAAA)AGCC AU-------A AUUA-UaguG AAA------- ----guaaac -gAC(-GAAA 2401 -)GU|a---- ----acucua cuac------ -a-------- gcu-ga-cAC ACUAU-AGCU 2461 A-AGA---CC CAAACUGGG( AUUAGAUAC) CCCA-CUAU| -GCUC-AGC- CCUAAA-CAC 2521 A--AAUA-AU |CA|------ ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- -ua(aaac)a a---G-AUUA 2701 U-U|--C|GC C-AGAG-UAC UACCGGC(-- -AACG--)GC CCA--AAACU CAAAGGAC-U 2761 UG|GCGGUG- CUUUAUA-CC CUUCUAGA|G GAGCCUGU-U |CUAUA--AU CG(AUAAACC 2821 C--------- ----)CGAUA A-ACCUCACC AUUUCUUGCU ---------- ---------- 2881 (-------aa ua-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGU CUA-UA|UA- 3121 |CC|-GC--C |A------UC UU-CA|G-CA AAC-|CCU(A --AAA)AGG- -----(aac- 3181 aa-)------ A-AGUAAGCA CAA-UCAU-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ----aguau- 3781 ---------A UAAAAA-CGU U-AGGUCAAG G|UGUA|ACC UAU------- ---------G 3841 G-A-AU-GG- AA-AGA--AA -UGGGCUACA UU--UUCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(-uc au---)---- ---------- ---------- AAG-AAaacc 4021 caau------ -----aACGA --AAGUC-AC U-A(------ ---------- ---------- 4081 ---------- ---------- UGAAAc---) U-AA-U--GA -C--UAAAG- -GAGGAUUUA 4141 G-U--AGUAA A-CUAAGA(- auaga-gu-- --)GCUUAGU U-GAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -UUA--GGCC 4261 AUGAAG-CA- CGCACACA-C -CGCCCGUCA C-CCU--CCU C--------- ---------- 4321 ---------- ---------- ---------- ---------- ---------< -aagug-ac- 4381 cauaa-ugc- --------ac uuaaaccu-- auu--aucac gca-uaagua auauga---- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- ---------- GAGG-AGA-C AAGUCGUAAC AAGGUAAG-C GUA-CU(GGA 4621 -A)AGU-GU- GCUUGGAUAA AU-------| ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- --------|| ||| // LOCUS mt.A.ameri 5213 bp RNA RNA 11-JAN-191 DEFINITION Mitochondrion Antilocapra americana. ACCESSION No information KEYWORDS No information. SOURCE Mitochondrion Antilocapra americana. ORGANISM Mitochondrion Antilocapra americana. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: M55540 DEFINITION Antilocapra americana mitochondrial Phe-, Val-, and Leu- (5' end) tRNA and 12S, and 16S rRNA genes. SOURCE Antilocapra americana liver mitochondrial cell line DH-alpha-5, clone pAAMMR 3.8-8. ORGANISM Mitochondrion Antilocapra americana Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Mammalia; Theria; Eutheria; Artiodactyla; Ruminantia; Pecora; Antilocapridae. REFERENCE 1 (bases 1 to 2684) AUTHORS Kraus,F. and Miyamoto,M.M. TITLE Rapid cladogenesis among the pecoran ruminants: Evidence from mitochondrial DNA sequences JOURNAL Systematic Zoology (1990) In press FEATURES Location/Qualifiers tRNA 1..67 /gene="Phe-tRNA" /product="transfer RNA-Phe" rRNA 68..1025 /gene="12S rRNA" /product="12S ribosomal RNA" tRNA 1026..1092 /gene="Val-tRNA" /product="transfer RNA-Val" rRNA 1093..2665 /gene="16S rRNA" /product="16S ribosomal RNA" tRNA 2666..2684 /gene="Leu-tRNA" /partial /product="transfer RNA-Leu" BASE COUNT 343 a 218 c 178 g 219 t 4255 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ----|----- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --cauAGGUU 661 (UGG-)U-CC C|AGCCU-UC CUA-UUGACU -A-CUAA-UA |GA-CU--UA -CAC-A-UGC 721 -AAGc----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------auc c)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------|- gCACCCCAGU GAAGA---CG C|CCU-Uuaa --au-c---- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- --(--caccu -----)---- 1261 ---------- ---------- ---g--aac- caaAAGGAGC |--------- uGGUAUCA-- 1321 -AGCACAC-- -----(auuu ---------- ---------- ---------- ------)--- 1381 ---GU|---A GCUUA--UGA C|GCCUU-GC --|------- (-uca--)-- -------GC| 1441 CACA------ ---------- ---------- -|-CCCC--( CACG-)--GG AGa----C-A 1501 GCA|GUG-AU AAAAAUUAAG C-UAUGGAC( ---------- ----GAAA)G UCUGA-CUA| 1561 A|-GUCA-U- AU-UGAuaa- ---------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- GGGUC|-GGU 1921 -AAA-U---C UCGU-G(-CC AGCCACC-GC -GGU-CA)-U ACGAUU|--- -GAC-CCU-- 1981 AGUUA-AUAG G-------aa uaCGGC|GUA AAGAGUGUUA -A-agc---- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 ------a--- --ucacacua aauaga--gu -----|UAAA uuAUAA-CUA ----AGCU(G 2341 UAAAA)AGCC AC-------A GCUG-UaauA AAA------- ----auagac -aAC(-GAAA 2401 -)GU|g---- ----acucua caac------ -c-------- gcu-gaucAC ACUAC-AGCU 2461 A-AGA---CC CAAACUGGG( AUUAGAUAC) CCCA-CUAU| -GCUU-AGC- CAUAAA-CAC 2521 A--GGUA-AU |UG|------ ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- uau(aaac)a a---A-AUUA 2701 U-U|--C|GC C-AGAG-UAC UACUAGC(-- -AACU--)GC UUA--AAACU CAAAGGAC-U 2761 UG|GCGGUG- CUUUACA-CC CUUCUAGA|G GAGCCUGU-U |CUAUA--AU CG(AUAAACC 2821 C--------- ----)CGAUA A-ACCUCACC AACCCUUGCU ---------- ---------- 2881 (-------aa ua-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGU CUA-UA|UA- 3121 |CC|-GC--C |A------UC UU-CA|G-CA AAC-|CCU(A A-AAA)AGG- -----(aac- 3181 aa-)------ G-AGUAAGCA UAA-UAAU-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ----agcac- 3781 ---------A UAAAAA-CGU U-AGGUCAAG G|UGUA|ACC UAU------- ---------G 3841 G-G-UU-GG- AA-AGA--AA -UGGGCUACA UU--UUCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(-uu uc---)---- ---------- ---------- AAG-AAcacu 4021 caa------- -----cACGA --AAGUU-AU U-A(------ ---------- ---------- 4081 ---------- ---------- UGAAAc---) U-GA-U--GA -C--UAAAG- -GAGGAUUUA 4141 G-U--AGUAA A-CUAAGA(- auaga-gc-- --)GCUUAGU U-GAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -UUA--GGCU 4261 AUGAAG-CA- CGCACACA-C -CGCCCGUCA C-CCU--CCU C--------- ---------- 4321 ---------- ---------- ---------- ---------- ---------< -aagua-aa- 4381 cacga-uac- --------ac cuaaacuu-- auu--cacac gua-uuaacc guacaa---- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- ---------- GAGG-AGA-U AAGUCGUAAC AAGGUAAG-C AUA-CU(GGA 4621 -A)AGU-GU- GCUUGGAUAA AU-------| ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- --------|| ||| // LOCUS mt.M.kirki 5213 bp RNA RNA 11-JAN-191 DEFINITION Mitochondrion Madoqua kirki. ACCESSION No information KEYWORDS No information. SOURCE Mitochondrion Madoqua kirki. ORGANISM Mitochondrion Madoqua kirki. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: M86495 DEFINITION Madoqua kirki mitochondrial 12S and 16S ribosomal RNA genes, and Phe-, Val-, and Leu-tRNA genes. SOURCE Mitochondrion Madoqua kirki (chromosome Mitochondrion Madoqua kirki) liver DNA. ORGANISM Mitochondrion Madoqua kirki Eukaryota; Animalia; Chordata; Vertebrata; Mammalia; Theria; Eutheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Antilopinae; Neotragini. REFERENCE 1 (bases 1 to 2676) AUTHORS Allard,M.W., Miyamoto,M.M., Jarecki,L., Kraus,F. and Tennant,M.R. TITLE DNA systematics and evolution of the artiodactyl family Bovidae JOURNAL Proc. Natl. Acad. Sci. U.S.A. 89, 3972-3976 (1992) FEATURES Location/Qualifiers tRNA 1..68 /product="transfer RNA-Phe" /gene="Phe-tRNA" rRNA 69..1025 /product="12S ribosomal RNA" /gene="12S rRNA" tRNA 1026..1092 /product="transfer RNA-Val" /gene="Val-tRNA" rRNA 1093..2657 /product="16S ribosomal RNA" /gene="16S rRNA" tRNA 2658..>2676 /product="transfer RNA-Leu" /gene="Leu-tRNA" BASE COUNT 356 a 219 c 166 g 216 t 4256 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ----|----- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --cacAGGUU 661 (UGG-)U-CC C|AGCCU-UC CUG-UUAGCU -U-CUAA-UA |GA-CU--UA -CAC-A-UGC 721 -AAGu----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------auc c)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------|- aCACUCCAGU GAGAA---UG C|CCU-Ccaa --gu-c---- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- --(--aacaa -----)---- 1261 ---------- ---------- ---g--acc- a-aAAGGAGC |--------- gGGUAUCA-- 1321 -AGCACACA- -----(aca- ---------- ---------- ---------- ------)--- 1381 --UGU|---A GCUCA--CGA C|ACCUU-GC --|------- (-uua--)-- -------AC| 1441 CACA------ ---------- ---------- -|-CCCC--( CACG-)--GG AGa----C-A 1501 GCA|GUG-AC AAAAAUUAAG C-CAUAAAC( ---------- ----GAAA)G UUUGA-CUA| 1561 A|-GUCA-U- AU-UUAuua- ---------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- GGGUC|-GGU 1921 -AAA-U---C UCGU-G(-CC AGCCACC-GC -GGU-CA)-U ACGAUU|--- -GAC-CCA-- 1981 AGCUA-ACAA G-------aa caCGGC|GUA AAACGUGUUU -A-agc---- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 ------g--- --ccacacua aauaga--gu -----|UAAA uuAAAA-UUA ----AACU(G 2341 UAAAA)AGCU AU-------A AUUU-UaauA AAA------- ----auaaau -aAC(-GAAA 2401 -)GU|a---- ----acucua aaac------ -a-------- gcu-ga-uAC ACUAU-AGCU 2461 A-AGA---CC CAAACUGGG( AUUAGAUAC) CCCA-CUAU| -GCUU-AGC- CCUAAA-CAC 2521 A--AAUA-GU |UA|------ ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- uau(aaac)a a---A-AUUA 2701 U-U|--C|GC C-AGAG-UAC UACCGGC(-- -AACA--)GC CUA--AAACU CAAAGGAC-U 2761 UG|GCGGUG- CUUUAUA-CC CUUCUAGA|G GAGCCUGU-U |CUAUA--AU CG(AUAAACC 2821 C--------- ----)CGAUA A-ACCUUACC AAUCCUUGCU ---------- ---------- 2881 (-------aa ua-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGU CUA-UA|UA- 3121 |CC|-GC--C |A------UC UU-CA|G-CA AAC-|CCU(A --AAA)AGG- -----(aac- 3181 aa-)------ A-AGUAAGCA CAA-UCAU-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ----uauac- 3781 ---------A UAAAAA-CGU U-AGGUCAAG G|UGUA|ACC UAU------- ---------G 3841 G-A-AU-GG- GA-AGA--AA -UGGGCUACA UU--UUCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(-uc uu---)---- ---------- ---------- AAG-AAaauu 4021 caca------ -----uACGA --AAGUU-AC U-A(------ ---------- ---------- 4081 ---------- ---------- UGAAAc---) U-AG-U--GA -C--CAAAG- -GAGGAUUUA 4141 G-U--AGUAA A-CUAAGA(- auaga-gu-- --)GCUUAGU U-GAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -UUA--GGCC 4261 AUGAAG-CA- CGCACACA-C -CGCCCGUCA C-CCU--CCU C--------- ---------- 4321 ---------- ---------- ---------- ---------- ---------< -gaaua-ac- 4381 caaaa-ugc- --------ac uuaaaccu-- auu--uacac gca-cuaacc acauga---- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- ---------- GAGG-AGA-C AAGUCGUAAC AAGGUAAG-C AUA-CU(GGA 4621 -A)AGU-GU- GCUUGGAUUA AC-------| ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---