LOCUS E.coli.ref 5903 bp RNA RNA ~?~???? DEFINITION Escherichia coli. ACCESSION No information KEYWORDS No information. SOURCE Escherichia coli. ORGANISM Escherichia coli. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Organism information Culture collection: ? Sequence information (bases 1 to 5903) Corresponding GenBank entry: J10695 Phylo:Eubacteria,Purple,gamma,3 Phylo:Eubacteria,Purple,gamma,3 BASE COUNT 389 a 352 c 487 g 314 t 4361 others ORIGIN 1 |--------- AAAUUGAAGA GUU(UGA)UC AU|GGCUCA- G-AU-UGAAC --GCUGGCGG 61 CAGG|-C-CU AA-CACAUGC A-AGUCG-AA CG|GUAACAG |GAAGAAG(C UUG)[----- 121 ---------- ---------- ---------- ---------- ---------- ---]CUUCUU 181 UGCUG|ACGA GU|GGCGGA- CGGGU-GAGU AAUG-UCUG- GGA--AAC-- ----UGCCUG 241 AUGG<----- ---------- ---------- ---------- ---------- ---------- 301 ->AGGGGG-A UAACUACUG( -G-A-AA)CG GUAGC-UAA- UACCGCAUAA CGUC(GCAA) 361 GACCAAAGAG GGGGACC(UU CG)GG|CCUC UU<------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- ---------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 ---------- ---------- ---------- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- ---------- ---------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 ---------- ---------- ---------- ---------- ---------- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------> GCCAUCGGAU -GU|GCCCAG AU|--GGG-A UUA--GCUA- --GUAGGUG- 1141 GG(-GUAACG G)CUC-ACCU A-|GGCGA-C GAU|CCCU-- A-GCUG|GUC -U-(GAGA-) 1201 GGA-UGACC- AGC|CACACU G-GAAC(U-G AGACAC)GGU CCAG-ACUCC (UACG-)GGA 1261 -GGCAGC-A- ---------| GUG-GG-GA- AUAUU-GCAC -AAUGGG-C( --GCAA--)G 1321 CCUG-A-UGC -|A|GCCAUG CCGC-GUGUA UGAAGAAGGC C(UUCG)GGU UGUAAAGUAC 1381 |UUUC|AGCG GGGAGGAAGG GAGUAAAG(U UAAUAC)CUU UGCUCAUUGA CGUUACCCGC 1441 AGAAG----- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- ---------- ---------- ----->AAGC 1561 ACC-|GG-CU A-AC-U-CCG U-G(CCA-GC -AGCC|GC-G GU-AA)UACG GAG|-GGUGC 1621 A-AGCGUU|A AUCGG--AAU UACUG-GGC| GUA--AAGCG CACGCAGGCG |GUUUGUUAA 1681 G|UCAGAUGU GAAAUCCCCG GG(CUCAA)C CUGGGAACUG CAUCUGAUAC U|GGCAAGC< 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- -------|-- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ----|----- 2821 ---------- ---------- ---------- ---------- ---------- ----->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- --------UU GAGUC|UCGU ---------- 3001 --AGAGGGGG GU|--AGAAU UCCAGGU-GU -AGCG(GU-G AAA---)UGC G-UAGA-G-A 3061 UCUGG-AGG- A-AUACCG-G UGGC(-GAAG )--GC|G--- GCCCCC-UG| GA-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------CGA ---AGACUGA -CGC-U|CA- G-GUGCGAAA 3301 GCGUGGGGA- GCAAACAGG( AUUA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CC-U -GGUAG|UCC AC--GCC-GU AAACGAUGUC GAC|UU|--- 3421 --GGAGG-UU GUG-C-C--- ----(----- CUUGA----) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------G G-CG-UGG-C -U-UCCG--- ---------- ----GAGC(- 3661 UAAC-)GCGU UAAGUC---- -GAC|-C|G- CCUGGGGAGU AC--GG-CC( --GCAA-)GG 3721 UUA-AAACUC -AAAU--GAA -UUG|AC-GG -GG-GCCCG- -C-AC-AAGC ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --G-GU|-GG 4021 AGCAUGUG|G UU-UAAUUCG (AUGCAA-CG )CGAA--GAA CCUUACCUGG UC[------- 4081 ---------- ---------- ---------- ---------- ---------- ---------- 4141 ---------- -]UUGACAUC |CACGGAAGU UUUCA(GAGA )UGAGAAUGU GCC(UUCG)G 4201 GAA|CCGUGA GAC|AG*GU- GCU-G-CAUG |GCU|GU-CG UCA|GCUCG- U|GUU(-GUG 4261 A-)AAUGUU- -GGG(UU-AA GU)CCCGCA- AC-GAGCGCA ACCCU-UA|U CCUUUGUUGC 4321 CAGCGG(UCC GG)[------ ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- ---------- ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- --------]C CG|----GGA ACUCAAAGGA GACU-GCC-A -G-U(----- 5041 --GAUAA-)A CUGG-A-GGA AGGU-GGGGA UGACGU--CA AGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CAU-C- A|UGGC|CC- 5221 U-U-A-CGAC CAGG-GCUAC A-CACGUGCU ACAAU--G-G CGCAUACAAA GAGAAGCGAC 5281 CUC(-----G CGA-)[---- ---------- ---------- ---------- ---------- 5341 ---------- ---------- ---------- ---------- ---------- ---------- 5401 ---------- ---------- ---------- ---------- ------]GAG CAAGCGGACC 5461 UCAUAAAGUG CGU-C-G--- UAGU-C-CGG AUUGGAGUC( UGCAACUC)G ACUCCAUG-A 5521 AGUCGG-AAU C--GCUAGUA AU-CGU-GGA (-UCAGAAU- )GCCAC-G-G -UGAAUACG- 5581 U-UCCCGGGC CU|UGUA-CA CACCGCCCGU CACACC-A-U GG-GAG---U GG-GUUGCA- 5641 AAA-GAAG-- UA-GGUAG-C UUA-ACC--- ---------- ---------- ---------- 5701 -------(UU CG----)--- ---------- ---------- ---------- ---------- 5761 -------GGA -GGGC-|GCU -UACC-ACUU UG-UGA-U-U CAUG-ACUGG GG-UGAA-G- 5821 UCGUAACAAG GU-------- -----A-A-C CGUAGG(GGA A)CCUGCGGU UGGAUCACCU 5881 CCUUA~~~~~ ~~~~~~~~|| ||| // LOCUS (1)-Eukary 5903 bp RNA RNA 29-JAN-1996 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: DIVIDER BASE COUNT 0 a 0 c 0 g 0 t 5903 others ORIGIN 1 |......... .......... .......... .......... .-........ .......... 61 .......... .......... .-........ ..|....... |......... .......... 121 .......... .......... .......... .......... .....-.... .......... 181 .......... ..|....... .......... .......... .......... .......... 241 .......... .......... .......... .......... .......... .......... 301 .......... .......... .......... .......... .......... .......... 361 .......... .......... .......... .......... .......... .......... 421 .......... .......... .......... .......... .......... .......... 481 .......... .......... .......... .......... .......... .......... 541 .......... .......... .......... .......... .......... .......... 601 .......... .......... .......... .......... .......... .......... 661 .......... .......... .......... .......... .......... .......... 721 .......... .......... .......... .......... .......... .......... 781 .......... .......... .......... .......... .......... .......... 841 .......... .......... .......... .......... .......... .......... 901 .......... .......... .......... .......... .......... .......... 961 .......... .......... .......... .......... .......... .......... 1021 .......... .......... .......... .......... .......... .......... 1081 .......... .......... ...|...... .......... .......... .-........ 1141 .......... .......... .......... ...|...... .......... .......... 1201 .......... .......... .......... .......... ....-..... .....-.... 1261 .......... .........| .......... .......... .......... .......... 1321 .......... .|........ ....-..... .......... .......... .......... 1381 .....|.... .......... .......... .......... .......... .......... 1441 .......... .......... .......... .......... .......... .......... 1501 .......... .......... .......... .-----.... .......... .....>.... 1561 .......... .......... .......... .......... .......... ..-|...... 1621 ........|. .......... .........| .......... .......... .......... 1681 .......... .......... .......... .......... .......... .|........ 1741 .......... .-........ .......... .......... ......-... .......... 1801 ..-....... ..-....-.. .......... .......... .......... .......... 1861 .......... .-........ .......... .......... .......... .......... 1921 .......... .......... .......... .......... .......... .......... 1981 .......... .......... .......... .......... .......... .......... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... .......... .......... .......... .......... .......... 2161 .......... .......... .......... .......... .......... .......... 2221 .......... .......... .......... .......... .......... .......... 2281 .......... .......... .......... .......... .......... .......... 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... ....-..... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... .......... 2701 .......... .......... .......... .......... .......... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ..---..... 2881 .......... .......... .......... .......... .......... .......... 2941 .......... .......... .......... .......... .....|.... .......... 3001 .......... ...--..... .......... .......... .......... .......... 3061 .......... .......... .......... .....|.... .........| ..-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------... .......... ....-.|... .......... 3301 .......... .......... ....------ ---------- ---------- ---------- 3361 ---------. .......... .......... .......... .......... ...|...... 3421 .......... .......... .......... .......... .......... .......... 3481 .......... .......... .......... .......... .......... .......... 3541 .......... .......... .......... .......... .......... .......... 3601 .......... .......... .......... .......... .......... .......... 3661 .......... .......... .......|.. .......... .......... .......... 3721 .......... -......... ....|..... .......... .......... ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --....|... 4021 ........|. .......... .......-.. .......... .......... .......... 4081 .......... ..-----... .......... .-..--.... .....----- ...-...... 4141 .......... .]........ |......... .......... .......... .......... 4201 .......... ...|...... .......... ....|..... .........- .......... 4261 .-........ .......... .......... ..-....... .......... .......... 4321 .......... .......... .......... .......... .......... .......... 4381 .......... .......... .......... ...-...... .......... .......... 4441 --........ .......... .......... .......... .......... .......... 4501 .......... .......... .......... .......... .......... .......... 4561 .......... .......... .......... .......... .......... .......... 4621 .......... .......... .......... .......... .......... .......... 4681 .......... .......... .......... .......... .......... .......... 4741 .......... .......... .......... .......... .......... .......... 4801 .......... .......... .......... .......... .......... .......... 4861 .......... .......... .......... .......... .......... .......... 4921 .......... .......... .......... .......... .......... .......... 4981 .......... .......... .......... .......... .......... .......... 5041 .......... .......... .......... .......... ...------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ---....... .|....|... 5221 .......... .......... .......... .......... .......... .......... 5281 ....-..... .......... .......... .......... .......... .......... 5341 .......... .......... .......... .......... .......... .......... 5401 .......... .......... .......... .......... .......... .......... 5461 .......... .....-..-- ....-.-... .......... .......... .......... 5521 .......... .-........ .......... .-........ .......... .......... 5581 .......... ..|....... .......... .......... .......... .......... 5641 ...-.....- .......... .......... .......... .......... .......... 5701 ......-... .......... .......... .......... .......... ........-. 5761 .......... ......|... .......... .......... .......... .......... 5821 .......... .......... .......... .......... .......... .......... 5881 .......... ........|| ||| // LOCUS (2)-Amoebi 5903 bp RNA RNA 29-JAN-1996 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: DIVIDER BASE COUNT 0 a 0 c 0 g 0 t 5903 others ORIGIN 1 |......... .......... .......... .......... .-........ .......... 61 .......... .......... .-........ ..|....... |......... .......... 121 .......... .......... .......... .......... .....-.... .......... 181 .......... ..|....... .......... .......... .......... .......... 241 .......... .......... .......... .......... .......... .......... 301 .......... .......... .......... .......... .......... .......... 361 .......... .......... .......... .......... .......... .......... 421 .......... .......... .......... .......... .......... .......... 481 .......... .......... .......... .......... .......... .......... 541 .......... .......... .......... .......... .......... .......... 601 .......... .......... .......... .......... .......... .......... 661 .......... .......... .......... .......... .......... .......... 721 .......... .......... .......... .......... .......... .......... 781 .......... .......... .......... .......... .......... .......... 841 .......... .......... .......... .......... .......... .......... 901 .......... .......... .......... .......... .......... .......... 961 .......... .......... .......... .......... .......... .......... 1021 .......... .......... .......... .......... .......... .......... 1081 .......... .......... ...|...... .......... .......... .-........ 1141 .......... .......... .......... ...|...... .......... .......... 1201 .......... .......... .......... .......... ....-..... .....-.... 1261 .......... .........| .......... .......... .......... .......... 1321 .......... .|........ ....-..... .......... .......... .......... 1381 .....|.... .......... .......... .......... .......... .......... 1441 .......... .......... .......... .......... .......... .......... 1501 .......... .......... .......... .-----.... .......... .....>.... 1561 .......... .......... .......... .......... .......... ..-|...... 1621 ........|. .......... .........| .......... .......... .......... 1681 .......... .......... .......... .......... .......... .|........ 1741 .......... .-........ .......... .......... ......-... .......... 1801 ..-....... ..-....-.. .......... .......... .......... .......... 1861 .......... .-........ .......... .......... .......... .......... 1921 .......... .......... .......... .......... .......... .......... 1981 .......... .......... .......... .......... .......... .......... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... .......... .......... .......... .......... .......... 2161 .......... .......... .......... .......... .......... .......... 2221 .......... .......... .......... .......... .......... .......... 2281 .......... .......... .......... .......... .......... .......... 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... ....-..... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... .......... 2701 .......... .......... .......... .......... .......... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ..---..... 2881 .......... .......... .......... .......... .......... .......... 2941 .......... .......... .......... .......... .....|.... .......... 3001 .......... ...--..... .......... .......... .......... .......... 3061 .......... .......... .......... .....|.... .........| ..-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------... .......... ....-.|... .......... 3301 .......... .......... ....------ ---------- ---------- ---------- 3361 ---------. .......... .......... .......... .......... ...|...... 3421 .......... .......... .......... .......... .......... .......... 3481 .......... .......... .......... .......... .......... .......... 3541 .......... .......... .......... .......... .......... .......... 3601 .......... .......... .......... .......... .......... .......... 3661 .......... .......... .......|.. .......... .......... .......... 3721 .......... -......... ....|..... .......... .......... ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --....|... 4021 ........|. .......... .......-.. .......... .......... .......... 4081 .......... ..-----... .......... .-..--.... .....----- ...-...... 4141 .......... .]........ |......... .......... .......... .......... 4201 .......... ...|...... .......... ....|..... .........- .......... 4261 .-........ .......... .......... ..-....... .......... .......... 4321 .......... .......... .......... .......... .......... .......... 4381 .......... .......... .......... ...-...... .......... .......... 4441 --........ .......... .......... .......... .......... .......... 4501 .......... .......... .......... .......... .......... .......... 4561 .......... .......... .......... .......... .......... .......... 4621 .......... .......... .......... .......... .......... .......... 4681 .......... .......... .......... .......... .......... .......... 4741 .......... .......... .......... .......... .......... .......... 4801 .......... .......... .......... .......... .......... .......... 4861 .......... .......... .......... .......... .......... .......... 4921 .......... .......... .......... .......... .......... .......... 4981 .......... .......... .......... .......... .......... .......... 5041 .......... .......... .......... .......... ...------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ---....... .|....|... 5221 .......... .......... .......... .......... .......... .......... 5281 ....-..... .......... .......... .......... .......... .......... 5341 .......... .......... .......... .......... .......... .......... 5401 .......... .......... .......... .......... .......... .......... 5461 .......... .....-..-- ....-.-... .......... .......... .......... 5521 .......... .-........ .......... .-........ .......... .......... 5581 .......... ..|....... .......... .......... .......... .......... 5641 ...-.....- .......... .......... .......... .......... .......... 5701 ......-... .......... .......... .......... .......... ........-. 5761 .......... ......|... .......... .......... .......... .......... 5821 .......... .......... .......... .......... .......... .......... 5881 .......... ........|| ||| // LOCUS (2)-Dictyo 5903 bp RNA RNA 29-JAN-1996 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: DIVIDER BASE COUNT 0 a 0 c 0 g 0 t 5903 others ORIGIN 1 |......... .......... .......... .......... .-........ .......... 61 .......... .......... .-........ ..|....... |......... .......... 121 .......... .......... .......... .......... .....-.... .......... 181 .......... ..|....... .......... .......... .......... .......... 241 .......... .......... .......... .......... .......... .......... 301 .......... .......... .......... .......... .......... .......... 361 .......... .......... .......... .......... .......... .......... 421 .......... .......... .......... .......... .......... .......... 481 .......... .......... .......... .......... .......... .......... 541 .......... .......... .......... .......... .......... .......... 601 .......... .......... .......... .......... .......... .......... 661 .......... .......... .......... .......... .......... .......... 721 .......... .......... .......... .......... .......... .......... 781 .......... .......... .......... .......... .......... .......... 841 .......... .......... .......... .......... .......... .......... 901 .......... .......... .......... .......... .......... .......... 961 .......... .......... .......... .......... .......... .......... 1021 .......... .......... .......... .......... .......... .......... 1081 .......... .......... ...|...... .......... .......... .-........ 1141 .......... .......... .......... ...|...... .......... .......... 1201 .......... .......... .......... .......... ....-..... .....-.... 1261 .......... .........| .......... .......... .......... .......... 1321 .......... .|........ ....-..... .......... .......... .......... 1381 .....|.... .......... .......... .......... .......... .......... 1441 .......... .......... .......... .......... .......... .......... 1501 .......... .......... .......... .-----.... .......... .....>.... 1561 .......... .......... .......... .......... .......... ..-|...... 1621 ........|. .......... .........| .......... .......... .......... 1681 .......... .......... .......... .......... .......... .|........ 1741 .......... .-........ .......... .......... ......-... .......... 1801 ..-....... ..-....-.. .......... .......... .......... .......... 1861 .......... .-........ .......... .......... .......... .......... 1921 .......... .......... .......... .......... .......... .......... 1981 .......... .......... .......... .......... .......... .......... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... .......... .......... .......... .......... .......... 2161 .......... .......... .......... .......... .......... .......... 2221 .......... .......... .......... .......... .......... .......... 2281 .......... .......... .......... .......... .......... .......... 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... ....-..... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... .......... 2701 .......... .......... .......... .......... .......... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ..---..... 2881 .......... .......... .......... .......... .......... .......... 2941 .......... .......... .......... .......... .....|.... .......... 3001 .......... ...--..... .......... .......... .......... .......... 3061 .......... .......... .......... .....|.... .........| ..-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------... .......... ....-.|... .......... 3301 .......... .......... ....------ ---------- ---------- ---------- 3361 ---------. .......... .......... .......... .......... ...|...... 3421 .......... .......... .......... .......... .......... .......... 3481 .......... .......... .......... .......... .......... .......... 3541 .......... .......... .......... .......... .......... .......... 3601 .......... .......... .......... .......... .......... .......... 3661 .......... .......... .......|.. .......... .......... .......... 3721 .......... -......... ....|..... .......... .......... ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --....|... 4021 ........|. .......... .......-.. .......... .......... .......... 4081 .......... ..-----... .......... .-..--.... .....----- ...-...... 4141 .......... .]........ |......... .......... .......... .......... 4201 .......... ...|...... .......... ....|..... .........- .......... 4261 .-........ .......... .......... ..-....... .......... .......... 4321 .......... .......... .......... .......... .......... .......... 4381 .......... .......... .......... ...-...... .......... .......... 4441 --........ .......... .......... .......... .......... .......... 4501 .......... .......... .......... .......... .......... .......... 4561 .......... .......... .......... .......... .......... .......... 4621 .......... .......... .......... .......... .......... .......... 4681 .......... .......... .......... .......... .......... .......... 4741 .......... .......... .......... .......... .......... .......... 4801 .......... .......... .......... .......... .......... .......... 4861 .......... .......... .......... .......... .......... .......... 4921 .......... .......... .......... .......... .......... .......... 4981 .......... .......... .......... .......... .......... .......... 5041 .......... .......... .......... .......... ...------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ---....... .|....|... 5221 .......... .......... .......... .......... .......... .......... 5281 ....-..... .......... .......... .......... .......... .......... 5341 .......... .......... .......... .......... .......... .......... 5401 .......... .......... .......... .......... .......... .......... 5461 .......... .....-..-- ....-.-... .......... .......... .......... 5521 .......... .-........ .......... .-........ .......... .......... 5581 .......... ..|....... .......... .......... .......... .......... 5641 ...-.....- .......... .......... .......... .......... .......... 5701 ......-... .......... .......... .......... .......... ........-. 5761 .......... ......|... .......... .......... .......... .......... 5821 .......... .......... .......... .......... .......... .......... 5881 .......... ........|| ||| // LOCUS D.discoi.1 5903 bp RNA RNA 10-APR-1991 DEFINITION Dictyostelium discoideum. ACCESSION No information KEYWORDS No information. SOURCE Dictyostelium discoideum. ORGANISM Dictyostelium discoideum. REFERENCE 1 AUTHORS Olsen,G.J., McCarroll,R. and Sogin,M.L. TITLE Secondary structure of the Dictyostelium discoideum small subunit JOURNAL Nucleic Acids Res. 11, 8037-8049 (1983) STANDARD No information COMMENTS Organism information Culture collection: ? Sequence information (bases 1 to 5903) Corresponding GenBank entry: X00134 Phylo:Eukaryotes,Protozoan BASE COUNT 531 a 347 c 447 g 545 t 4033 others ORIGIN 1 |--------- -----UAACU GGU(UGA)UC CU|GCCAGU- A-GUCA-UAU --GCUUGUCU 61 CAAA|-GAUU AA-GCCAUGC A-UGUCU-AA GU|------- |-------(- ---)[----- 121 ---------- --------au aaauuc--uu ---------- -gu-a-cgau gaa]------ 181 -----|---A CU|G-CAGA- CGGCU-CAUU ACAa-cagu- gau-aaac-- ----uaauag 241 acuu<----- ---------- ---------- -----ucggg uuuu-acc-- ---------- 301 ->UUUUGG-A UAACCGCAG( -U-AAAU)C- GGGGC-UAA- UACAUA---- ----(----) 361 ---------- -------(-- --)--|---- -- -aagucuacu -gu|gucacu gc|--CCU-A UCA--ACUUU C-GAUGGUA- 1141 CG(-GUAUUG G)CCU-ACCA U-|GGUUG-U AAC|GGGU-A A-CGGG|GAA -U-(UAGG-) 1201 GUU-CGAUU- CCG|GAGAGG G-AGCC(U-G AGAAAU)GGC UACC-ACUUC (UACG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GC- AAAUU-ACUC -AAUCCC-A( ---aua--)C 1321 GGGG-A-AGU -|A|GUGACA AUAA-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AU CAAUA-CC-- uaUCC(---- --uuuuu)GG A---G-GGCA A-UUGAAAU- 1501 ------GAAC ----ACAAAU -UAAA--ACU C-----UU-A A-U-U-AACA C---->AAUU 1561 GnAG|GG-CA A-GU-C-UGG U-G(CCA-GC -NGCC|GC-G GU-AA)UUCC AG-|CUCCAA 1621 U-AGCAUA|U ACUAA--AGU UGUUG-CAG| UUA--AAAAG CUCGUAGUUG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 aaguuuaagg u-uuac-cgg guuuau--g- uc-auuuacc acuucg-ugg ---------- 1801 ---------- ------u-u- aaaucg-a-- -caccgguau cucuuu-cuu aa-------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- -uaguucagc 2161 uuguauu--- ---------- ---------- ---aucuuug auag------ ---------- 2221 ----ugcuug uuuggaca-- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- --UUUCACUG UG-AGAA--A 2461 AUUGUGGUGU UU-AA-AG-C AGGCguc--- ---------- ---------- ---------- 2521 --------uc gccu-g--au cuuuug-CAG CAUGGuA|UG -AUGAAA-CA -uGAC--au- 2581 uuua------ ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ----|--CgC 2821 --U-AUUGGU -UU-GC---- -----guuu- aaa--GuGUA A--UGAUUAA UA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGA|UGGA ---------- 3001 --UGGGGGUG UU|--CAUAU UGGUGGG-CG -AGAG(GU-G AAA---)UUC G-UUGA-C-C 3061 CUAUC-AAG- A-UGAACU-U CUGC(-GAAA )--GC|A--- UUCACC-AA| AU-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------ACU ---UCCCCAU -UAA-U|CA- A-GAACGAAA 3301 GUUUGGGGA- UCGAAGACG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CGUAG|UCC AA--ACU-AU AAACUAUGUC GAC|CA|--- 3421 --gggau-cg guu-a-a-aa uuu-(----- uuuca----) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ----aaau-u u-aa-ucg-g ca-ccuu--- ---------- ----guGA(- 3661 GAAA-)UCau -GAGUG-uuu aGAU|-U|C- CGGGGGGAGU AU--GG-UC( --GCAA-)GU 3721 CUG-AAACUU -AAAG--GAA -UUG|AC-GG -AA-GGGCA- -C-ACAAUGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --A-GU|-GG 4021 AGCCUGCG|G CU-UAAUUUG (ACUCAA-CU )CGGG--AAA ACUUACCAAG CU[aag-aua 4081 uagu-aagga uu-----gac aga(cuaaaa g-a)------ ucuuu----- cau-gauu-c 4141 uauaag---- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU-G-CAUG |GUC|GU-UC UUA|GUUGG- U|GGA(-GCG 4261 A-)UUUGUC- -UGG(UC-AA UU)CCGAUA- AC-GGACGAG ACCUC-GA|- ---------- 4321 ------(--- --)[CcU-GC UAACUAGuag u--auuuauu agucgauaua gacg-auagc 4381 uuu--ucugg g---guuugg aaugau(uuc g)-------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------g ucaucuccug 4621 cuucaaggag uguguagucu gacucgauag guacgaau-- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ----uaaAA- CU-------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------U CUUAGAGG]- --|------- ---------- GACU-Acc-u -g-c(----- 5041 --cucaa-)g cagg-C-GGA AGUC-CGAGG CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UG A|UGCC|CU- 5221 U-AGA-UACC UUGG-GCCGC A-CGCGCGCU ACAAU--G-U AGGAA----- ---------- 5281 ---(------ ----)[acaa aaag------ ---------- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- ---------- ---------- 5401 -gcuccu-gg ucc(ggaa-) ggauu----g gguaau-cau uugaau]--- ---------- 5461 -------uuc cua-c-g--- uAAC-U-GGG CUUGAUCUU( UGUAAUUA)U UGAUCAUA-A 5521 ACGAGG-AAU U--CCUUGUA AG-CGU-AAG (-UCAUUAC- )CUUAU-G-C -UGAAUAUG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUCC-U-A CC-GAU--CG AA-UGAuac- 5641 ggu-aaag-- uua-acgga- ucgu-uuua- ucug-ug--- ---------- ---------- 5701 -------(gc aa----)--- ---------- ---------- ---------- --ca-cug-- 5761 auauaa-auu -aaaa-|guu -auuuaaauc uc-auu-g-u uuag-AGGAA GG-AGAA-G- 5821 UCGUAACAAG GU-------- -----A-U-C CGUAGG(UGA A)CCUGCGGA UGGAUCA--- 5881 -UUUU~~~~~ ~~~~~~~~|| ||| // LOCUS D.discoi.2 5903 bp RNA RNA 11-JAN-191 DEFINITION Dictyostelium discoideum. ACCESSION No information KEYWORDS No information. SOURCE Dictyostelium discoideum. ORGANISM Dictyostelium discoideum. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: K02641 LOCUS DDIRGSS 1872 bp ds-DNA INV 15-JUN-1989 DEFINITION Slime mold (D.discoideum) 17S small subunit ribosomal RNA gene, complete coding sequence. ACCESSION K02641 KEYWORDS . SOURCE Slime mold (D.discoideum) rDNA. ORGANISM Dictyostelium discoideum Eukaryota; Animalia; Protozoa; Sarcomastigophora; Sarcodina; Rhizopoda; Eumycetozoa; Dictyostelia; Dictyosteliida; Dictyosteliidae. REFERENCE 1 (bases 1 to 1872) AUTHORS McCarroll,R., Olsen,G.J., Stahl,Y.D., Woese,C.R. and Sogin,M.L. TITLE Nucleotide sequence of the Dictyostelium discoideum small-subunit ribosomal ribonucleic acid inferred from the gene sequence: Evolutionary implications JOURNAL Biochemistry 22, 5858-5868 (1983) STANDARD full staff_review COMMENT Base 542 is a purine in a highly conserved region in all eukaryotic small subunit rRNA sequences. By comparison with other sequences [1] concluded that this base is probably "g". By the same reasoning base 562 is probably "a". [1] compares the sequence presented here with eukaryotic 17S small subunit rRNA gene sequences of other organisms, to obtain phylogenetic information. FEATURES from to/span description rRNA 1 1872 17S small subunit rRNA BASE COUNT 531 a 347 c 447 g 545 t 2 others ORIGIN 9 bp upstream of Sau3A site. BASE COUNT 531 a 347 c 447 g 545 t 4033 others ORIGIN 1 |--------- -----UAACU GGU(UGA)UC CU|GCCAGU- A-GUCA-UAU --GCUUGUCU 61 CAAA|-GAUU AA-GCCAUGC A-UGUCU-AA GU|------- |-------(- ---)[----- 121 ---------- --------au aaauuc--uu ---------- -gu-a-cgau gaa]------ 181 -----|---A CU|G-CAGA- CGGCU-CAUU ACAa-cagu- gau-aaac-- ----uaauag 241 acuu<----- ---------- ---------- -----ucggg uuuu-acc-- ---------- 301 ->UUUUGG-A UAACCGCAG( -U-AAAU)C- GGGGC-UAA- UACAUA---- ----(----) 361 ---------- -------(-- --)--|---- -- -aagucuacu -gu|gucacu gc|--CCU-A UCA--ACUUU C-GAUGGUA- 1141 CG(-GUAUUG G)CCU-ACCA U-|GGUUG-U AAC|GGGU-A A-CGGG|GAA -U-(UAGG-) 1201 GUU-CGAUU- CCG|GAGAGG G-AGCC(U-G AGAAAU)GGC UACC-ACUUC (UACG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GC- AAAUU-ACUC -AAUCCC-A( ---aua--)C 1321 GGGG-A-AGU -|A|GUGACA AUAA-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AU CAAUA-CC-- uaUCC(---- --uuuuu)GG A---G-GGCA A-UUGAAAU- 1501 ------GAAC ----ACAAAU -UAAA--ACU C-----UU-A A-U-U-AACA C---->AAUU 1561 GRAG|GG-CA A-GU-C-UGG U-G(CCA-GC -RGCC|GC-G GU-AA)UUCC AG-|CUCCAA 1621 U-AGCAUA|U ACUAA--AGU UGUUG-CAG| UUA--AAAAG CUCGUAGUUG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 aaguuuaagg u-uuac-cgg guuuau--g- uc-auuuacc acuucg-ugg ---------- 1801 ---------- ------u-u- aaaucg-a-- -caccgguau cucuuu-cuu aa-------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- -uaguucagc 2161 uuguauu--- ---------- ---------- ---aucuuug auag------ ---------- 2221 ----ugcuug uuuggaca-- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- --UUUCACUG UG-AGAA--A 2461 AUUGUGGUGU UU-AA-AG-C AGGCguc--- ---------- ---------- ---------- 2521 --------uc gccu-g--au cuuuug-CAG CAUGGUA|UG -AUGAAA-CA -UGAC--au- 2581 uuua------ ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ----|--CgC 2821 --U-AUUGGU -UU-GC---- -----guuu- aaa--GUGUA A--UGAUUAA UA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGA|UGGA ---------- 3001 --UGGGGGUG UU|--CAUAU UGGUGGG-CG -AGAG(GU-G AAA---)UUC G-UUGA-C-C 3061 CUAUC-AAG- A-UGAACU-U CUGC(-GAAA )--GC|A--- UUCACC-AA| AU-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------ACU ---UCCCCAU -UAA-U|CA- A-GAACGAAA 3301 GUUUGGGGA- UCGAAGACG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CGUAG|UCC AA--ACU-AU AAACUAUGUC GAC|CA|--- 3421 --gggau-cg guu-a-a-aa uuu-(----- uuuca----) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ----aaau-u u-aa-ucg-g ca-ccuu--- ---------- ----guGA(- 3661 GAAA-)UCau -GAGUG-uuu aGAU|-U|C- CGGGGGGAGU AU--GG-UC( --GCAA-)GU 3721 CUG-AAACUU -AAAG--GAA -UUG|AC-GG -AA-GGGCA- -C-ACAAUGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --A-GU|-GG 4021 AGCCUGCG|G CU-UAAUUUG (ACUCAA-CU )CGGG--AAA ACUUACCAAG CU[aag-aua 4081 uagu-aagga uu-----gac aga(cuaaaa g-a)------ ucuuu----- cau-gauu-c 4141 uauaag---- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU-G-CAUG |GUC|GU-UC UUA|GUUGG- U|GGA(-GCG 4261 A-)UUUGUC- -UGG(UC-AA UU)CCGAUA- AC-GGACGAG ACCUC-GA|- ---------- 4321 ------(--- --)[CCU-GC UAACUAGuag u--auuuauu agucgauaua gacg-auagc 4381 uuu--ucugg g---guuugg aaugau(uuc g)-------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------g ucaucuccug 4621 cuucaaggag uguguagucu gacucgauag guacgaau-- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ----uaaAA- CU-------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------U CUUAGAGG]- --|------- ---------- GACU-Acc-u -g-c(----- 5041 --cucaa-)g cagg-C-GGA AGUC-CGAGG CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UG A|UGCC|CU- 5221 U-AGA-UACC UUGG-GCCGC A-CGCGCGCU ACAAU--G-U AGGAA----- ---------- 5281 ---(------ ----)[acaa aaag------ ---------- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- ---------- ---------- 5401 -gcuccu-gg ucc(ggaa-) ggauu----g gguaau-cau uugaau]--- ---------- 5461 -------uuc cua-c-g--- uAAC-U-GGG CUUGAUCUU( UGUAAUUA)U UGAUCAUA-A 5521 ACGAGG-AAU U--CCUUGUA AG-CGU-AAG (-UCAUUAC- )CUUAU-G-C -UGAAUAUG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUCC-U-A CC-GAU--CG AA-UGAuac- 5641 ggu-aaag-- uua-acgga- ucgu-uuua- ucug-ug--- ---------- ---------- 5701 -------(gc aa----)--- ---------- ---------- ---------- --ca-cug-- 5761 auauaa-auu -aaaa-|guu -auuuaaauc uc-auu-g-u uuag-AGGAA GG-AGAA-G- 5821 UCGUAACAAG GU-------- -----A-U-C CGUAGG(UGA A)CCUGCGGA UGGAUCA--- 5881 -UUUU~~~~~ ~~~~~~~~|| ||| // LOCUS D.discoi.3 5903 bp RNA RNA 11-JAN-191 DEFINITION Dictyostelium discoideum. ACCESSION No information KEYWORDS No information. SOURCE Dictyostelium discoideum. ORGANISM Dictyostelium discoideum. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: X00601 LOCUS DDIRGA 7972 bp ds-DNA INV 15-JUN-1989 DEFINITION Slime mold (D.discoideum) ribosomal RNA gene. ACCESSION X00601 KEYWORDS 17S ribosomal RNA; 26S ribosomal RNA; 5.8S ribosomal RNA; ribosomal RNA. SOURCE Slime mold (D.discoideum) DNA. ORGANISM Dictyostelium discoideum Eukaryota; Animalia; Protozoa; Sarcomastigophora; Sarcodina; Rhizopoda; Eumycetozoa; Dictyostelia; Dictyosteliida; Dictyosteliidae. REFERENCE 1 (bases 1 to 7972) AUTHORS Ozaki,T., Hoshikawa,Y., Iida,Y. and Iwabuchi,M. TITLE Sequence analysis of the transcribed and 5' non-transcribed regions of the ribosomal RNA gene in Dictyostelium discoideum JOURNAL Nucleic Acids Res. 12, 4171-4184 (1984) STANDARD simple staff_review COMMENT EMBL features not translated to GenBank features: key from to description SITE 1 998 NTS (non-transcribed spacer) SITE 999 1793 ETS (external transcribed spacer) SITE 3665 3994 ITS 1 (internal transcribed spacer) SITE 4157 4731 ITS 2 FEATURES from to/span description rRNA 1794 3664 17S rRNA rRNA 3995 4156 5.8S rRNA rRNA 4732 > 7972 26S rRNA BASE COUNT 2277 a 1504 c 1943 g 2248 t ORIGIN BASE COUNT 531 a 348 c 448 g 544 t 4032 others ORIGIN 1 |--------- -----UAACU GGU(UGA)UC CU|GCCAGU- A-GUCA-UAU --GCUUGUCU 61 CAAA|-GAUU AA-GCCAUGC A-UGUCU-AA GU|------- |-------(- ---)[----- 121 ---------- --------au aaauuc--uu ---------- -gu-a-cgau gaa]------ 181 -----|---A CU|G-CAGA- CGGCU-CAUU ACAa-cagu- gau-aaac-- ----uaauag 241 acuu<----- ---------- ---------- -----ucggg uuuu-acc-- ---------- 301 ->UUUUGG-A UAACCGCAG( -U-AAAU)C- GGGGC-UAA- UACAUA---- ----(----) 361 ---------- -------(-- --)--|---- -- -aagucuacu -gu|gucacu gc|--CCU-A UCA--ACUUU C-GAUGGUA- 1141 CG(-GUAUUG G)CCU-ACCA U-|GGUUG-U AAC|GGGU-A A-CGGG|GAA -U-(UAGG-) 1201 GUU-CGAUU- CCG|GAGAGG G-AGCC(U-G AGAAAU)GGC UACC-ACUUC (UACG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GC- AAAUU-ACUC -AAUCCC-A( ---aua--)C 1321 GGGG-A-AGU -|A|GUGACA AUAA-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AU CAAUACCU-- A-UCC(---- --uuuuu)GG A---G-GGCA A-UUGAAAU- 1501 ------GAAC ----ACAAAU -UAAA--ACU C-----UU-A A-U-U-AACA C---->AAUU 1561 GGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCCAA 1621 UuAGCAUA|U ACUAA--AGU UGUUG-CAG| UUA--AAAAG CUCGUAGUUG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 aaguuuaagg u-uuac-cgg guuuau--g- uc-auuuacc acuucg-ugg ---------- 1801 ---------- ------u-u- aaaucg-a-- -caccgguau cucuuu-cuu aa-------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- -uaguucagc 2161 uuguauu--- ---------- ---------- ---aucuuug auag------ ---------- 2221 ----ugcuug uuuggaca-- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- --UUUCACUG UG-AGAA--A 2461 AUUGUGGUGU UU-AA-AG-C AGGCguc--- ---------- ---------- ---------- 2521 --------uc gcc--g---u cuuuug-CAG CAUGGuA|UG -AUGAAA-CA -uGAC--au- 2581 uuua------ ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ----|--CgC 2821 --U-AUUGGU -UU-GC---- -----guuu- aaa--GuGUA A--UGAUUAA UA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGA|UGGA ---------- 3001 --UGGGGGUG UU|--CAUAU UGGUGGG-CG -AGAG(GU-G AAA---)UUC G-UUGA-C-C 3061 CUAUC-AAG- A-UGAACU-U CUGC(-GAAA )--GC|A--- UUCACC-AA| AU-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------ACC ---UCCCCAU -UAA-U|CA- A-GAACGAAA 3301 GUUUGGGGA- UCGAAGACG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CGUAG|UCC AA--ACU-AU AAACUAUGUC GAC|CA|--- 3421 --gggau-cg guu-a-a-aa uuu-(----- uuuca----) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ----aaau-u u-aa-ucg-g ca-ccuu--- ---------- ----guGA(- 3661 GAAA-)UCau -GAGUG-uuu aGAU|-U|C- CGGGGGGAGU AU--GG-UC( --GCAA-)GU 3721 CUG-AAACUU -AAAG--GAA -UUG|AC-GG -AA-GGGCA- -C-ACAAUGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --A-GU|-GG 4021 AGCCUGCG|G CU-UAAUUUG (ACUCAA-CU )CGGG--AAA ACUUACCAAG CU[aag-aua 4081 uagu-aagga uu-----gac aga(cuaaaa g-a)------ ucuuu----- cau-gauu-c 4141 uaugag---- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU-G-CAUG |GUC|GU-UC UUA|GUUGG- U|GGA(-GCG 4261 A-)UUUGUC- -UGG(UC-AA UU)CCGAUA- AC-GGACGAG ACCUC-GA|- ---------- 4321 ------(--- --)[CCU-GC UAACUAGuag u--auuuauu agucgauaua gacg-auagc 4381 uuu--ucugg g---guuugg aaugau(uuc g)-------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------g ucaucuccug 4621 cuucaaggag uguguagucu gacucgauag guacgaau-- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ----uaaAA- CU-------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------U CUUAGAGG]- --|------- ---------- GACU-Acc-u -g-c(----- 5041 --cucaa-)g cagg-C-GGA AGUC-CGAGG CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UG A|UGCC|CU- 5221 U-AGA-UACC UUGG-GCCGC A-CGCGCGCU ACAAU--G-U AGGAA----- ---------- 5281 ---(------ ----)[acaa aaag------ ---------- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- ---------- ---------- 5401 -gcuccu--g ucc(ggaa-) ggauu----g gguaau-cau uugaau]--- ---------- 5461 -------uuc cua-c-g--- uAAC-U-GGG CUUGAUCUU( UGUAAUUA)U UGAUCAUA-A 5521 ACGAGG-AAU U--CCUUGUA AG-CGU-AAG (-UCAUUAC- )CUUAU-G-C -UGAAUAUG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUCC-U-A CC-GAU--CG AA-UGAuac- 5641 ggu-aaag-- uua-acgga- ucgu-uuua- ucug-ug--- ---------- ---------- 5701 -------(gc aa----)--- ---------- ---------- ---------- --ca-cug-- 5761 auauaa-auu -aaaa-|guu -auuuaaauc uc-auu-g-u uuag-AGGAA GG-AGAA-G- 5821 UCGUAACAAG GU-------- -----A-U-C CGUAGG(UGA A)CCUGCGGA UGGAUCA--- 5881 -UUUU~~~~~ ~~~~~~~~|| ||| // LOCUS (2)-Diplom 5903 bp RNA RNA 29-JAN-1996 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: DIVIDER BASE COUNT 0 a 0 c 0 g 0 t 5903 others ORIGIN 1 |......... .......... .......... .......... .-........ .......... 61 .......... .......... .-........ ..|....... |......... .......... 121 .......... .......... .......... .......... .....-.... .......... 181 .......... ..|....... .......... .......... .......... .......... 241 .......... .......... .......... .......... .......... .......... 301 .......... .......... .......... .......... .......... .......... 361 .......... .......... .......... .......... .......... .......... 421 .......... .......... .......... .......... .......... .......... 481 .......... .......... .......... .......... .......... .......... 541 .......... .......... .......... .......... .......... .......... 601 .......... .......... .......... .......... .......... .......... 661 .......... .......... .......... .......... .......... .......... 721 .......... .......... .......... .......... .......... .......... 781 .......... .......... .......... .......... .......... .......... 841 .......... .......... .......... .......... .......... .......... 901 .......... .......... .......... .......... .......... .......... 961 .......... .......... .......... .......... .......... .......... 1021 .......... .......... .......... .......... .......... .......... 1081 .......... .......... ...|...... .......... .......... .-........ 1141 .......... .......... .......... ...|...... .......... .......... 1201 .......... .......... .......... .......... ....-..... .....-.... 1261 .......... .........| .......... .......... .......... .......... 1321 .......... .|........ ....-..... .......... .......... .......... 1381 .....|.... .......... .......... .......... .......... .......... 1441 .......... .......... .......... .......... .......... .......... 1501 .......... .......... .......... .-----.... .......... .....>.... 1561 .......... .......... .......... .......... .......... ..-|...... 1621 ........|. .......... .........| .......... .......... .......... 1681 .......... .......... .......... .......... .......... .|........ 1741 .......... .-........ .......... .......... ......-... .......... 1801 ..-....... ..-....-.. .......... .......... .......... .......... 1861 .......... .-........ .......... .......... .......... .......... 1921 .......... .......... .......... .......... .......... .......... 1981 .......... .......... .......... .......... .......... .......... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... .......... .......... .......... .......... .......... 2161 .......... .......... .......... .......... .......... .......... 2221 .......... .......... .......... .......... .......... .......... 2281 .......... .......... .......... .......... .......... .......... 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... ....-..... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... .......... 2701 .......... .......... .......... .......... .......... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ..---..... 2881 .......... .......... .......... .......... .......... .......... 2941 .......... .......... .......... .......... .....|.... .......... 3001 .......... ...--..... .......... .......... .......... .......... 3061 .......... .......... .......... .....|.... .........| ..-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------... .......... ....-.|... .......... 3301 .......... .......... ....------ ---------- ---------- ---------- 3361 ---------. .......... .......... .......... .......... ...|...... 3421 .......... .......... .......... .......... .......... .......... 3481 .......... .......... .......... .......... .......... .......... 3541 .......... .......... .......... .......... .......... .......... 3601 .......... .......... .......... .......... .......... .......... 3661 .......... .......... .......|.. .......... .......... .......... 3721 .......... -......... ....|..... .......... .......... ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --....|... 4021 ........|. .......... .......-.. .......... .......... .......... 4081 .......... ..-----... .......... .-..--.... .....----- ...-...... 4141 .......... .]........ |......... .......... .......... .......... 4201 .......... ...|...... .......... ....|..... .........- .......... 4261 .-........ .......... .......... ..-....... .......... .......... 4321 .......... .......... .......... .......... .......... .......... 4381 .......... .......... .......... ...-...... .......... .......... 4441 --........ .......... .......... .......... .......... .......... 4501 .......... .......... .......... .......... .......... .......... 4561 .......... .......... .......... .......... .......... .......... 4621 .......... .......... .......... .......... .......... .......... 4681 .......... .......... .......... .......... .......... .......... 4741 .......... .......... .......... .......... .......... .......... 4801 .......... .......... .......... .......... .......... .......... 4861 .......... .......... .......... .......... .......... .......... 4921 .......... .......... .......... .......... .......... .......... 4981 .......... .......... .......... .......... .......... .......... 5041 .......... .......... .......... .......... ...------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ---....... .|....|... 5221 .......... .......... .......... .......... .......... .......... 5281 ....-..... .......... .......... .......... .......... .......... 5341 .......... .......... .......... .......... .......... .......... 5401 .......... .......... .......... .......... .......... .......... 5461 .......... .....-..-- ....-.-... .......... .......... .......... 5521 .......... .-........ .......... .-........ .......... .......... 5581 .......... ..|....... .......... .......... .......... .......... 5641 ...-.....- .......... .......... .......... .......... .......... 5701 ......-... .......... .......... .......... .......... ........-. 5761 .......... ......|... .......... .......... .......... .......... 5821 .......... .......... .......... .......... .......... .......... 5881 .......... ........|| ||| // LOCUS Hexami.sp. 5903 bp RNA RNA 11-JAN-191 DEFINITION Hexamita sp.. ACCESSION No information KEYWORDS No information. SOURCE Hexamita sp. ORGANISM Hexamita sp. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: Z17224 LOCUS HSRRNAA 1550 bp RNA INV 03-MAR-1993 DEFINITION Hexamita sp. gene encoding rRNA. ACCESSION Z17224 KEYWORDS rRNA. SOURCE Hexamita sp. ORGANISM Hexamita sp. Eukaryota; Animalia; Protozoa; Sarcomastigophora; Mastigophora; Zoomastigophora; Diplomonadida; Diplomonadina; Hexamitidae. REFERENCE 2 (bases 1 to 1550) AUTHORS van Keulen,H. TITLE Direct Submission JOURNAL Submitted (07-OCT-1992) Van Keulen H., Cleveland State University, Biology, 1983 East 24th street, Cleveland, Ohio, U.S.A., 44115 STANDARD full automatic REFERENCE 3 (bases 1 to 1550) AUTHORS van Keulen,H., Gutell,R.R., Gates,M.A., Campbell,S.R., Erlandsen,S.L., Jarroll,E.L., Kulda,J. and Meyer,E.A. TITLE Unique phylogenetic position of Diplomonadida based on the complete small subunit ribosomal RNA sequence of Giardia ardeae, G. muris, G. duodenalis and Hexamita sp JOURNAL FASEB J. 7, 223-231 (1993) STANDARD full automatic FEATURES Location/Qualifiers source 1..1550 /organism="Hexamita sp." /germline /dev_stage="Trophozoite" /cell_line="culture" rRNA 1..1550 /function="constituent of small ribosomal subunit" /product="rRNA" /gene="rRNA" /standard_name="16S rRNA" /citation=[1] BASE COUNT 391 a 348 c 449 g 362 t ORIGIN BASE COUNT 391 a 348 c 449 g 362 t 4353 others ORIGIN 1 |--------- -----UACCU GGU(UGA)AC CU|GCCAGA- A-GG-G-CAA --GCUAAGAU 61 UAAG|-GAUU AA-GCCAUGC A-UGCC--AG GU|------- |-------(- ---)[----- 121 ---------- ---------- auaagcuaau ---------- -acac-aggu gaa]------ 181 -----|---A CU|G-CGAA- CGGCU-CAUU AAAu-cagu- uga-aaug-- ----ucucgu 241 gcuu<----- ---------- ---------- ---------- ---------- ----uauucg 301 u>agucgg-c uaauacggg( -c-a-ac)uc ucuua-cua- aucgug---- ----(----) 361 ---------- -------(-- --)--|---- --<------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ------|--- ---------- ---------- 661 ----cuucgu u--acaucgg uagugaga(- ---------- ---------- ---------- 721 -----gcga- -)ucucg--- ---------- ---------- -------ggu ug--auuuau 781 g-uuguaaaa auga------ ---------- ---------- ---------- ---------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 ---------- ---------- -----cuguu aggc------ ---------- ---------- 1021 -|-------- ---------- ---------- ---------- ---------- ---------- 1081 ---------> -aggcacgau -ca|gcuucu ga|--CGC-A UCA--UUAA- --GUAGGAG- 1141 AA(-GUAAAG G)UUA-UCCU A-|UGAGU-U CAC|GCGU-A C-CGGA|GAA -U-(UAGG-) 1201 GUU-CGACU- CCG|GAGAAU G-AGCA(U-G AGAGAC)GGC UCAU-AGUUC (UAAG-)GGA 1261 -GGCAGC-A- ---------| GGC-GC-GG- AAAUU-GCCC -AAUGUA-C( --aaac--)G 1321 UACG-A-GGC -|A|GUGACG AAAA-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 ---------- ---cuugag- ccggc(---- ---uuag)gc cggua-uuaa g--------- 1501 ----cuGAgc ----gagg-c -gcac--aca c-----cc-u cgcga-acgc ----->AAUU 1561 AGUG|GG-AG A-GC-A-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AU-|CACUGA 1621 U-AGCUUU|C UCUUA--CGU UGUUG-CAG| UUA--AAAAG CUCGUAGCCG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 uu----guua g-cccc-gcg ugucac--u- uu-gagaaaa ucggag-ugu ---------- 1801 ---------- ------u-c- auuaca-g-- -ggaaaccgc ugcaca-gua ca-------- 1861 gcaaagaaug a-cauugcuc cccggcgacg ggggguacgg aguaua---- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- -------|-- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ----|----- 2821 ---------- ---------- ---------- ---------- ---------- ----->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -UGGC|GGCG ---------- 3001 --CGGGACUG AU|--AGUAU UUGGUGG-GG -ACAG(GU-G AAA---)UAG G-AUGA-U-C 3061 CACCA-AGG- A-CUUUCA-A CAGC(-GAAG )--GC|A--- GUCGGU-AA| GC-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------GCC ---GUCCAGU -UGG-U|CA- A-GAGCGAAA 3301 GUGUGAGGA- UAGACGAUG( AUUA------ ---------- ---------- ---------- 3361 ---------- GAAAC)CG-U -UUUAU|UUC AC--GCC-UU AAACGAUACC AUC|UC|--- 3421 --agaag-cg ggc-u----- ----(----- caga-----) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- a-gu-ccg-c -a-ucuc--- ---------- ----aaGG(- 3661 GAAA-)CCGc -aAGUU--uc gGGU|-U|C- UGGGGGAAGU AU--GA-UU( --GCAA-)GA 3721 UUG-AAACUU -GAAG--GUA -UUG|AC-GG -AA-AGAUA- -CCAC-AAGA ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --C-GU|-GG 4021 AGUCUGCG|G CU-CAAUUUG (ACUCAA-CA )CGCA--AA- UCUUACCAGA CC[cag-aug 4081 cuuu-acgga gc-----aac aga(uuaaga g-u)------ ucuuu----- ugc-gauu-g 4141 ggcagu---- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU-G-CAUG |GCC|GC-UC CUA|GUUCG- U|GGU(-GUA 4261 A-)ACUGUC- -UGC(CU-UA UU)GCGUUA- AC-GAGCGAG ACAAC-CA|- ---------- 4321 ------(--- --)[ccccca ---------- ---------- ---------g cc-------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- ---------- ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- --uggggg]- --|------- ---------- GAGC-Gcc-u -g-c(----- 5041 --guuga-)g cagg-A-CGA ACGU-GGUUG CUCUAG--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UG A|UGCC|CU- 5221 U-AGA-CACU CUGG-GCCGC A-CGCGUACU ACAAU--G-U CGGCU----- ---------- 5281 ---(------ ----)[gcac agcg------ ---------- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- ---------- ---------- 5401 --ucgcc-c- gcc(ugaa-) ggcccg--gc cauu---cgu gugaac]--- ---------- 5461 -------cgc cga-C-G--- UGGU-A-GGG AUCGGAGAU( UGGAAU-U)U UUCUCGUG-A 5521 ACGAGG-AAU G--UCUUGUA GG-UCU-GCG (-UUAUUAG- )CGCGGGG-C -UGACUAUG- 5581 U-CCCUGUCU UU|UGUA-CA CACCGCCCGU CGCUCC-U-A CC-GAC-UUG GA-UGuuuu- 5641 ggu-gagu-- ugu-ccaga- gugc-gcgu- ---------- ---------- ---------- 5701 -------(cg cg----)--- ---------- ---------- ---------- ---------- 5761 --gcau-gca -cgaa-|guu -cugcgaacc cc-aau-g-u cugg-AGGAA GG-AGAA-G- 5821 UCAUAACAAG GC-------- -----U-G-C UGUAGG(GGA A)CCUGCAGC CGGAUCA--- 5881 --uuagugcc -------~|| ||| // LOCUS G.ardeae 5903 bp RNA RNA 11-JAN-191 DEFINITION Giardia ardeae. ACCESSION No information KEYWORDS No information. SOURCE Giardia ardeae. ORGANISM Giardia ardeae. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: Z17210 Giardia ardeae 18S rRNA gene. BASE COUNT 240 a 474 c 548 g 173 t 4468 others ORIGIN 1 |--------- -----CAUCC GGU(UGA)UC CU|GCCGGA- G-CG-C-GAC --GCUCGCCC 61 CAAG|-GACA CAaGCCAUGC A-CGCcg-gc gc|------- |-------(- ---)[----- 121 ---------- ---------- ---------g ---------- -gc-a-cggc gaa]------ 181 -----|---g gg|G-CGGA- CGGCU-CAGU ACAc-cggu- ugc-accc-- ----ugcgcg 241 gcgg<----- ---------- ---------- ---------- ---------- ---ucggggc 301 u>agccgg-a cacCGCUGG( -c-a-ac)CC AGCGa-caa- gacgag---- ----(----) 361 ---------- -------(-- --)--|---- --<------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ------|--- ---------- ---------- 661 ---------- --------cg cucaa----- ---------- ---------- ---------- 721 -------gcg cg-gccgggg a-gccgg--c gcga-cgcag cgaa------ ---------- 781 ---------- ---------- ---------- ---------- ---------- ---------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 ---------- ---------- ---------- ---------- ---------- ---------- 1021 -|-------- ---------- ---------- ---------- ---------- ---------- 1081 ---------> -uggccgccu -gg|gcuucc gc|--GGC-A UCA--CCCC- --GCGGGCA- 1141 CG(-GUCGCG G)CGU-GCCC G-|GGGUC-U CAC|GCCU-G G-CGGA|GGA -U-(CAGG-) 1201 GUU-CGACU- CCG|GAGAGC G-GGCC(U-G AGAGAC)GGC CCGC-ACAUC (CAAG-)GAC 1261 -GGCAGC-A- ---------| GGC-GC-GG- AACUU-GCCC -AAUGCG-C( ---ggg--)G 1321 CGCG-A-GGC -|A|GCGACG GGGC-GU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 ---------- ---------- gccgg(---- ----gac)cc ggc------- ---------- 1501 ----gcgggc ----gugg-c -guac--agc c-----cc-a cgcgu-g--- ----->GAGU 1561 CGAG|GG-AA AGGU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCGGC 1621 A-GGCGUC|G CGCGG--CGC UGCUG-CAG| UUA--AAACG UCCGGCGUCG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 ggccg-cccu g-ccgg-gag gaaagg--g- ga-gcgcucg aggcag-gcu ---------- 1801 ---------- ------c--- ---------- ---------- ---------- ---------- 1861 ---------- -----guugg accuaccgcc cgggacggcg ----agg--- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- -------|-- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ----|----- 2821 ---------- ---------- ---------- ---------- ---------- ----->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -AGAG|UGGG ---------- 3001 --CGGGGGCA UU|--AGUAC CGGACGG-GG -ACGG(GU-G AAA---)CAG G-AUGA-U-C 3061 CCUCC-GAG- A-CUCCCC-G CGGC(-GCAG )--GC|G--- UCUGCC-AG| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------CCA ---CCUCUGU -CGA-U|CC- A-GGGCGAAG 3301 GCCGGGGGC- GAGAAGGCG( AUUA------ ---------- ---------- ---------- 3361 ---------- GACAC)CA-C -CGUAU|UCC CG--GGC-GU AAACGGUGCC GCC|CC|--- 3421 --ggcgc-cg gc-------- ----(----- gucg-----) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---g-ucg-g -c-gccc--- ---------- ----caGG(- 3661 GAAA-)CCGG ucAGGC--uc cGGC|-U|C- UGGGGGGAGU AU--GG-CC( --GCAA-)GG 3721 CUG-GAACUU -GAAG--GCA -UUG|AC-GG -AG-GGGUA- -CCAC-CAGA ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --U-GU|-GG 4021 AGUCUGCG|G CU-CAAUUUG (ACUCAA-CG )CGAA--CA- CCUUACCAGG CC[cgg-acg 4081 cgcg-gagga uc-----gac agc(c-gggu g-c)------ gcuuu----- cgu-gauc-g 4141 cgcggg---- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|CG-GU- GGU-G-CAUG |GCC|GU-UC CCA|GCCCG- U|GGC(-GCG 4261 A-)GCCGUC- -UGC(UU-CA CU)GCGACA- AC-GAGCGAG ACCCC-GG|- ---------- 4321 ------(--- --)[ccacac ---------- ---------- ---------c cgc------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- ---------- ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- --gugugg]- --|------- ---------- GACC-Gcc-g -c-c(----- 5041 --gggga-)g gcgg-A-GGA -AGG-CGGGG CGAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UG A|UGCC|CU- 5221 C-AGA-CGCC CUGG-GCCGC A-CGCGUACU ACACU--G-G GCCGG----- ---------- 5281 ---(------ ----)[gcag cgcg------ ---------- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- ---------- ---------- 5401 ---cgcg-cg gcc(gcga-) ggccgg--gc gacc---cgc --caag]--- ---------- 5461 -------ccg gcc-C-G--- UGGU-U-GGG AUCGCGGGC( UGGAA--C)G CCCCCGUG-A 5521 ACCCGG-AAU A--UCUCGUA GG-CGC-GUG (-UCCCCAA- )CGCGC-G-C -CGGAUGCG- 5581 U-CCCUGCCC CU|UGUA-CA CACCGCCCGU CGCUCC-U-A CC-GAC--UG GG-CGCcgc- 5641 ggc-gagu-- ccc-cggga- gc-------- ---------- ---------- ---------- 5701 -------(cc cc---g)--- ---------- ---------- ---------- ---------- 5761 ---------g -ugaa-|cgg -cgacgagcc cu-ggc-g-c cugg-AGGAA GG-AGAA-G- 5821 UCGUAACAAG GU-------- -----A-U-C CGUAGG(UGA A)CCUGCGGA UGGAUCC--- 5881 --cuag~~~~ ~~~~~~~~|| ||| // LOCUS G.intest.1 5903 bp RNA RNA 11-JAN-191 DEFINITION Giardia intestinalis. ACCESSION No information KEYWORDS No information. SOURCE Giardia intestinalis. ORGANISM Giardia intestinalis. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: X52949 ID GIRRNATR standard; DNA; INV; 5566 BP. XX AC X52949; XX DT 25-JUN-1990 (annotation) XX DE Giardia intestinalis DNA for rRNA tandem repeat unit XX KW 16S ribosomal RNA; 28S ribosomal RNA; 5.8S ribosomal RNA; KW ribosomal RNA; unidentified reading frame. XX OS Giardia intestinalis OC Eukaryota; Protozoa; Flagellata; Polymastigina. XX RN [1] (bases 1-5566) RA Upcroft P.; RT ; RL Submitted (03-MAY-1990) on tape to the EMBL Data Library by: RL Upcroft P., Queensland Institute of Medical Research, Bramston RL Terrace, Herston, Brisbane,, Queensland, Australia 4006. XX RN [2] (bases 1-5566) RA Healey A., Mitchell R., Upcroft J.A., Boreham P.F.L., Upcroft P.; RT "Complete nucleotide sequence of the ribosomal RNA tandem repeat RT unit from Giardia Intestinalis"; RL Nucleic Acids Res. 18:4006-4006(1990). XX CC *source: developmental stage=trophozoite; CC *source:cell line=BRIS/83/HEPU/106; CC *source: clone=pKG1, pKG2, pMG1, pMG2; CC The stop codon at position 3581-3583 in the coding region is CC believed exhibit alternative codon usage, since a protein has CC been identified from this ORF. XX FH Key From To Description FH FT RRNA 1 814 16S rRNA FT SITE 786 772 (C) put. drosophila topoisomerase II FT binding FT site FT SITE 856 993 5.8S-like rRNA FT RRNA 1049 ? 28S rRNA FT SITE 1083 1092 put. yeast A box FT SITE 1085 1095 put. yeast autonomously replicating FT segment FT SITE 1095 1086 (C) put. drosophila T box FT SITE 1109 1118 put. drosophila A box FT SITE 1109 1118 put. yeast A box FT SITE 2676 2685 put. drosophila A box FT SITE 2676 2685 put. yeast A box FT SITE 2676 2667 (C) put. drosophila A box FT SITE 2680 2667 (C) put. yeast A box FT SITE 2682 2668 (C) put. drosophila topoisomerase II FT binding FT site FT SITE 2683 2674 (C) put. drosophila T box FT SITE 2789 2799 put. yeast autonomously replicating FT segment FT SITE 2813 2799 (C) put. drosophila topoisomerase II FT binding FT site FT SITE 2847 2856 put. drosophila A box FT SITE 2847 2856 put. yeast A box FT SITE 2855 2841 (C) put. drosophila topoisomerase II FT binding FT site FT SITE 3277 3268 (C) put. drosophila T box FT SITE 3326 3338 put. drosophila T box FT SITE 3338 3329 (C) put. drosophila A box FT SITE 3338 3329 (C) put. yeast A box FT SITE 3396 3382 (C) put. drosophila topoisomerase II FT binding FT site FT SITE 3426 3417 (C) put. yeast A box FT SITE 3440 3451 put. drosophila T box FT SITE 3451 3441 (C) put. yeast A box FT SITE 3802 3816 put. drosophila topoisomerase II FT binding FT site FT SITE 3808 3799 (C) put. drosophila T box FT SITE 4127 4136 put. drosophila A box FT SITE 4127 4136 put. yeast A box FT SITE 4296 4309 put. drosophila topoisomerase II FT binding FT site FT CDS 4306 3448 (C) unidentified reading frame FT SITE 4310 4301 (C) put. drosophila T box FT PRM 4331 4326 (C) put. TATA box FT SITE 4367 4364 (C) 18bp proximal sequence element I FT SITE 4375 4371 (C) 18bp proximal sequence element II FT SITE 4407 4398 (C) put. upstream promoter FT SITE 4534 4548 put. drosophila topoisimerase II FT binding FT site FT SITE 4626 4637 put. yeast A box FT SITE 4642 4626 (C) put. drosophila T box FT SITE 4758 4768 put. yeast autonomously replicating FT segment FT SITE 4758 4768 put. yeast A box FT SITE 4758 4767 put. drosophila A box FT SITE 4772 4758 (C) put. drosophila T box FT RRNA 4929 5566 16S rRNA XX SQ Sequence 5566 BP; 842 A; 2040 C; 2151 G; 530 T; 3 other; BASE COUNT 228 a 531 c 553 g 139 t 4452 others ORIGIN 1 |--------- -----CAUCC GGU(CGA)UC CU|GCCGGA- G-CG-C-GAC --GCUCUCCC 61 CAAG|-GACG AA-GCCAUGC A-UGCcc-gc uc|------- |-------(- ---)[----- 121 ---------- ---------- ---------- ---------- --a-c-ccgg gac]------ 181 -----|---g cg|G-CGGA- CGGCU-CAGG ACAa-cggu- ugc-accc-- ----cccgcg 241 gcgg<----- ---------- ---------- ---------- ---------- ---ucccugc 301 u>agccgg-a caccgcugg( -c-a-ac)cc ggcgc-caa- gacgug---- ----(----) 361 ---------- -------(-- --)--|---- --<------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ------|--- ---------- ---------- 661 ---------- -----cgcgc aagggcgg-- ---------- ---------- ---------- 721 -----gcgc- --ccgcgggc g-agcag--c guga-cgcag cgac------ ---------- 781 ---------- ---------- ---------- ---------- ---------- ---------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 ---------- ---------- ---------- ---------- ---------- ---------- 1021 -|-------- ---------- ---------- ---------- ---------- ---------- 1081 ---------> -ggcccgccc -gg|gcuucc gg|--GGC-A UCA--CCCG- --GUCGGCG- 1141 CG(-GUCGCG G)CGC-GCCG A-|GGGCC-C GAC|GCCU-G G-CGGA|GAA -U-(CAGG-) 1201 GUU-CGACU- CCG|GAGAGC G-GGCC(U-G CGAGAC)GGC CCGC-ACAUC (CAAG-)GAC 1261 -GGCAGC-A- ---------| GGC-GC-GG- AACUU-GCCC -AAUGCG-C( ---ggc--)G 1321 CGCG-A-GGC -|A|GCGACG GGGA-GC--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 ---------- ---------- ---gc(---- ---gcga)gc ---------- ---------- 1501 ------GAgg ----cggg-c -ccac--agc c-----cc-c gccgc-g--- ----->GAGC 1561 CGAG|GG-CA AGGU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCGGC 1621 G-AGCGUC|G CGCGG--CGC UGCUG-CAG| UUG--AAACG CCCGUAGUUG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 gccccccgcc g-ccac-gag gaaacg--g- ga-gcgcucc aggcag-gcc ---------- 1801 ---------- ------c--- ---------- ---------- ---------- ---------- 1861 ---------- -----guugg acccgccgcg ugggaccgcg cagcgggc-c g--------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- -------|-- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ----|----- 2821 ---------- ---------- -------gc- gcgccgcggc a--gccccga gg--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -AGAG|CGGG ---------- 3001 --CGGGGGCA CC|--GGUAC CGGCCGG-GG -ACGG(GU-G AAA---)CAG G-AUGA-U-C 3061 CCGCC-GAG- A-CCGCCG-G CCGC(-GCAG )--GC|G--- CCUGCC-AA| GA-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------CCG ---CCUCUGU -CAA-U|MA- A-GGGCGAAG 3301 GCCGGGGGC- UAGAAGGCG( AUCA------ ---------- ---------- ---------- 3361 ---------- GACAC)CA-C -CGUAU|UCC CG--GCC-GU AAACGGUGCC GCC|CC|--- 3421 --gcggc-cg gcg------- ----(---cg cgcgucc--) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- --cg-ccg-g -c-cgcc--- ---------- ----caGG(- 3661 GAAA-)CCGG -gAGGC-ucc gGGC|-U|C- UGGGGGGAGU AU--GG-CC( --GCAA-)GG 3721 CUG-AAACUU -GAAG--GCA -UUG|AC-GG -AG-GGGUA- -CCAC-CAGA ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --C-GU|-GG 4021 AGUCUGCG|G CU-CAAUCUG (ACUCAA-CG )CGCG--CA- CCUCACCAGG CC[cgg-acg 4081 cgcg-gagga cc-----gac agc(c-gggc g-c)------ gcuuu----- cgc-gauc-g 4141 cgcggg---- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|CG-GU- GGU-G-CAUG |GCC|GC-UC CCA|GCCCG- U|GGC(-GCG 4261 A-)GCCGUC- -UGC(UC-CA UU)GCGACA- AC-GAGCGAG ACCCC-GG|- ---------- 4321 ------(--- --)[ccgcg- ---------- ---------- ---------g gcgc------ 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- ---------- ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---cgcgg]- --|------- ---------- GACG-Gcc-c -g-c(----- 5041 ---gcga-)g cggg-A-GGA -CGG-CGGGG CGAUAG--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UG A|UGCC|CU- 5221 C-AGA-CGCC CUGG-GCCGC A-CGCGCGCU ACACU--G-G CGGGG----- ---------- 5281 ---(------ ----)[ccag ---------- ---------- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- ---------- ---------- 5401 ---ccgg-cg cgc(gcga-) ggacgc--gc gg-------- ---agc]--- ---------- 5461 -------ccc cgc-C-G--- UGGC-C-GGG ACCGCGGGC( UGGAA--C)G CCCCCGCG-C 5521 ACCAGG-AAU G--UCUUGUA GG-CGC-CCG (-CCCCCAC- )CGCGC-G-C -CGGACGCG- 5581 U-CCCUGCCC CU|UGUA-CA CACCGCCCGU CGCUCC-U-A CC-GAC--UG GG-CGCggc- 5641 ggc-gagc-- gcc-ccgga- ---------- ---------- ---------- ---------- 5701 -------(cg cg--c-)--- ---------- ---------- ---------- ---------- 5761 ---------- --gaa-|ggg -ccgcgagcc cc-cgc-g-c cugg-AGGAA GG-AGAA-G- 5821 UCGUAACAAG GU-------- -----AuU-C CGUAGG(UGA A)CCUGCGGA UGGAUCC--- 5881 --cuc~~~~~ ~~~~~~~~|| ||| // LOCUS G.intest.2 5903 bp RNA RNA 11-JAN-191 DEFINITION Giardia intestinalis subsp. was Giardia lamblia. ACCESSION No information KEYWORDS No information. SOURCE Giardia intestinalis subsp. was Giardia lamblia. ORGANISM Giardia intestinalis. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: U09491 BASE COUNT 229 a 532 c 554 g 139 t 4449 others ORIGIN 1 |--------- -----CAUCC GGU(CGA)UC CU|GCCGGA- G-CG-C-GAC --GCUCUCCC 61 CAAG|-GACG AA-GCCAUGC A-UGCcc-gc uc|------- |-------(- ---)[----- 121 ---------- ---------- ---------- ---------- --a-c-ccgg gac]------ 181 -----|---g cg|G-CGGA- CGGCU-CAGG ACAa-cggu- ugc-accc-- ----cccgcg 241 gcgg<----- ---------- ---------- ---------- ---------- ---ucccugc 301 u>agccgg-a caccgcugg( -c-a-ac)cc ggcgc-caa- gacgug---- ----(----) 361 ---------- -------(-- --)--|---- --<------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ------|--- ---------- ---------- 661 ---------- -----cgcgc aagggcgg-- ---------- ---------- ---------- 721 -----gcgc- --ccgcgggc g-agcag--c guga-cgcag cgac------ ---------- 781 ---------- ---------- ---------- ---------- ---------- ---------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 ---------- ---------- ---------- ---------- ---------- ---------- 1021 -|-------- ---------- ---------- ---------- ---------- ---------- 1081 ---------> -ggcccgccc -gg|gcuucc gg|--GGC-A UCA--CCCG- --GUCGGCG- 1141 CG(-GUCGCG G)CGC-GCCG A-|GGGCC-C GAC|GCCU-G G-CGGA|GAA -U-(CAGG-) 1201 GUU-CGACU- CCG|GAGAGC G-GGCC(U-G CGAGAC)GGC CCGC-ACAUC (CAAG-)GAC 1261 -GGCAGC-A- ---------| GGC-GC-GG- AACUU-GCCC -AAUGCG-C( ---ggc--)G 1321 CGCG-A-GGC -|A|GCGACG GGGA-GC--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 ---------- ---------- ---gc(---- ---gcga)gc ---------- ---------- 1501 ------GAgg ----cggg-c -ccac--agc c-----cc-c gccgc-g--- ----->GAGC 1561 CGAG|GG-CA AGGU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCGGC 1621 G-AGCGUC|G CGCGG--CGC UGCUG-CAG| UUG--AAACG CCCGUAGUUG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 gccccccgcc g-ccac-gag gaaacg--g- ga-gcgcucc aggcag-gcc ---------- 1801 ---------- ------c--- ---------- ---------- ---------- ---------- 1861 ---------- -----guugg acccgccgcg ugggaccgcg cagcgggcgc g--------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- -------|-- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ----|----- 2821 ---------- ---------- -------gc- gcgccgcggc a--gccccga gg--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -AGAG|CGGG ---------- 3001 --CGGGGGCA CC|--GGUAC CGGCCGG-GG -ACGG(GU-G AAA---)CAG G-AUGA-U-C 3061 CCGCC-GAG- A-CCGCCG-G CCGC(-GCAG )--GC|G--- CCUGCC-AA| GA-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------CCG ---CCUCUGU -CAA-U|CA- A-GGGCGAAG 3301 GCCGGGGGC- UAGAAGGCG( AUCA------ ---------- ---------- ---------- 3361 ---------- GACAC)CA-C -CGUAU|UCC CG--GCC-GU AAACGGUGCC GCC|CC|--- 3421 --gcggc-cg gcg------- ----(---cg cgcgucc--) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- --cg-ccg-g -c-cgcc--- ---------- ----caGG(- 3661 GAAA-)CCGG -gAGGC-ucc gGGC|-U|C- UGGGGGGAGU AU--GG-CC( --GCAA-)GG 3721 CUG-AAACUU -GAAG--GCA -UUG|AC-GG -AG-GGGUA- -CCAC-CAGA ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --C-GU|-GG 4021 AGUCUGCG|G CU-CAAUCUG (ACUCAA-CG )CGCG--CA- CCUCACCAGG CC[cgg-acg 4081 cgcg-gagga cc-----gac agc(c-gggc g-c)------ gcuuu----- cgc-gauc-g 4141 cgcggg---- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|CG-GU- GGU-G-CAUG |GCC|GC-UC CCA|GCCCG- U|GGC(-GCG 4261 A-)GCCGUC- -UGC(UC-CA UU)GCGACA- AC-GAGCGAG ACCCC-GG|- ---------- 4321 ------(--- --)[ccgcg- ---------- ---------- ---------g gcgc------ 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- ---------- ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---cgcgg]- --|------- ---------- GACG-Gcc-c -g-c(----- 5041 ---gcga-)g cggg-A-GGA -CGG-CGGGG CGAUAG--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UG A|UGCC|CU- 5221 C-AGA-CGCC CUGG-GCCGC A-CGCGCGCU ACACU--G-G CGGGG----- ---------- 5281 ---(------ ----)[ccag ---------- ---------- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- ---------- ---------- 5401 ---ccgg-cg ccc(gcga-) ggacgc--gc gg-------- ---agc]--- ---------- 5461 -------ccc cgc-C-G--- UGGC-C-GGG ACCGCGGGC( UGGAA--C)G CCCCCGCG-C 5521 ACCAGG-AAU G--UCUUGUA GG-CGC-CCG (-CCCCCAC- )CGCGC-G-C -CGGACGCG- 5581 U-CCCUGCCC CU|UGUA-CA CACCGCCCGU CGCUCC-U-A CC-GAC--UG GG-CGCggc- 5641 ggc-gagc-- gcc-ccgga- ---------- ---------- ---------- ---------- 5701 -------(cg cg--c-)--- ---------- ---------- ---------- ---------- 5761 ---------- --gaa-|ggg -ccgcgagcc cc-cgc-g-c cugg-AGGAA GG-AGAA-G- 5821 UCGUAACAAG GU-------- -----A-U-C CGUAGG(UGA A)CCUGCGGA UGGAUCC--- 5881 --UCUAG~~~ ~~~~~~~~|| ||| // LOCUS G.intest.3 5903 bp RNA RNA 11-JAN-191 DEFINITION Giardia intestinlis (strain Portland 1) subsp. was G.lamblia (strain Portland 1). ACCESSION No information KEYWORDS No information. SOURCE Giardia intestinlis (strain Portland 1) subsp. was G.lamblia (strain Portland 1). ORGANISM Giardia intestinlis (strain Portland 1). REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: M54878 LOCUS GIARRDAA 1453 bp ss-rRNA RNA 05-JUN-1991 DEFINITION G.lamblia small subunit ribosomal (16S-like) RNA. ACCESSION M54878 M19500 KEYWORDS 16S-like ribosomal RNA; ribosomal RNA small subunit. SOURCE G.lamblia (strain Portland 1) rRNA. ORGANISM Giardia lamblia Eukaryota; Animalia; Protozoa; Sarcomastigophora; Mastigophora; Zoomastigophora; Diplomonadida; Diplomonadina; Hexamitidae. REFERENCE 1 (bases 1 to 1453) AUTHORS Sogin,M.L., Gunderson,J.H., Elwood,H.J., Alonso,R.A. and Peattie,D.A. TITLE Phylogenetic meaning of the kingdom concept: An unusual ribosomal RNA from Giardia lamblia JOURNAL Science 243, 75-77 (1989) STANDARD full automatic COMMENT NCBI gi: 174684 FEATURES Location/Qualifiers rRNA 1..1453 /product="16S-like ribosomal RNA" source 1..1453 /organism="Giardia lamblia" BASE COUNT 229 a 532 c 553 g 139 t ORIGIN BASE COUNT 229 a 532 c 553 g 139 t 4450 others ORIGIN 1 |--------- -----CAUCC GGU(CGA)UC CU|GCCGGA- G-CG-C-GAC --GCUCUCCC 61 CAAG|-GACG AA-GCCAUGC A-UGCcc-gc uc|------- |-------(- ---)[----- 121 ---------- ---------- ---------- ---------- --a-c-ccgg gac]------ 181 -----|---g cg|G-CGGA- CGGCU-CAGG ACAa-cggu- ugc-accc-- ----cccgcg 241 gcgg<----- ---------- ---------- ---------- ---------- ---ucccugc 301 u>agccgg-a caccgcugg( -c-a-ac)cc ggcgc-caa- gacgug---- ----(----) 361 ---------- -------(-- --)--|---- --<------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ------|--- ---------- ---------- 661 ---------- -----cgcgc aagggcgg-- ---------- ---------- ---------- 721 -----gcgc- --ccgcgggc g-agcag--c guga-cgcag cgac------ ---------- 781 ---------- ---------- ---------- ---------- ---------- ---------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 ---------- ---------- ---------- ---------- ---------- ---------- 1021 -|-------- ---------- ---------- ---------- ---------- ---------- 1081 ---------> -ggcccgccc -gg|gcuucc gg|--GGC-A UCA--CCCG- --GUCGGCG- 1141 CG(-GUCGCG G)CGC-GCCG A-|GGGCC-C GAC|GCCU-G G-CGGA|GAA -U-(CAGG-) 1201 GUU-CGACU- CCG|GAGAGC G-GGCC(U-G CGAGAC)GGC CCGC-ACAUC (CAAG-)GAC 1261 -GGCAGC-A- ---------| GGC-GC-GG- AACUU-GCCC -AAUGCG-C( ---GGC--)G 1321 CGCG-A-GGC -|A|GCGACG GGGA-GC--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 ---------- ---------- ---gc(---- ---gcga)gc ---------- ---------- 1501 ------gagg ----cggg-c -ccac--agc c-----cc-c gccgc-g--- ----->GAGC 1561 CGAG|GG-CA AGGU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCGGC 1621 G-AGCGUC|G CGCGG--CGC UGCUG-CAG| UUG--AAACG CCCGUAGUUG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 gccccccgcc g-ccac-gag gaaacg--g- ga-gcgcucc aggcag-gcc ---------- 1801 ---------- ------c--- ---------- ---------- ---------- ---------- 1861 ---------- -----guugg acccgccgcg ugggaccgcg cagcgggcgc g--------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- -------|-- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ----|----- 2821 ---------- ---------- -------gc- gcgccgcggc a--gccccga gg--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -agag|cggg ---------- 3001 --CGGGGGCA CC|--GGUAC CGGCCGG-GG -ACGG(GU-G AAA---)CAG G-AUGA-U-C 3061 CCGCC-GAG- A-CCGCCG-G CCGC(-GCAG )--GC|G--- CCUGCC-AA| GA-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------CCG ---CCUCUGU -CAA-U|CA- A-GGGCGAAG 3301 GCCGGGGGC- UAGAAGGCG( AUCA------ ---------- ---------- ---------- 3361 ---------- GACAC)CA-C -CGUAU|UCC CG--GCC-GU AAACGGUGCC GCC|CC|--- 3421 --gcggc-cg gcg------- ----(---cg cgcgucc--) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- --cg-ccg-g -c-cgcc--- ---------- ----caGG(- 3661 GAAA-)CCGG -gAGGC-ucc gGGC|-U|C- UGGGGGGAGU AU--GG-CC( --GCAA-)GG 3721 CUG-AAACUU -GAAG--GCA -UUG|AC-GG -AG-GGGUA- -CCAC-CAGA ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --C-GU|-GG 4021 AGUCUGCG|G CU-CAAUCUG (ACUCAA-CG )CGCG--CA- CCUCACCAGG CC[cgg-acg 4081 cgcg-gagga cc-----gac agc(c-gggc g-c)------ gcuuu----- cgc-gauc-g 4141 cgcggg---- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|CG-GU- GGU-G-CAUG |GCC|GC-UC CCA|GCCCG- U|GGC(-GCG 4261 A-)GCCGUC- -UGC(UC-CA UU)GCGACA- AC-GAGCGAG ACCCC-GG|- ---------- 4321 ------(--- --)[ccgcg- ---------- ---------- ---------g gcgc------ 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- ---------- ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---cgcgg]- --|------- ---------- gacg-gcc-c -g-c(----- 5041 ---gcga-)g cggg-A-GGA -CGG-CGGGG CGAUAG--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UG A|UGCC|CU- 5221 C-AGA-CGCC CUGG-GCCGC A-CGCGCGCU ACACU--G-G CGGGG----- ---------- 5281 ---(------ ----)[ccag ---------- ---------- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- ---------- ---------- 5401 ---ccgg-cg ccc(gcga-) ggacgc--gc gg-------- ---agc]--- ---------- 5461 -------ccc cgc-C-G--- UGGC-C-GGG ACCGCGGGC( UGGAA--C)G CCCCCGCG-C 5521 ACCAGG-AAU G--UCUUGUA GG-CGC-CCG (-CCCCCAC- )CGCGC-G-C -CGGACGCG- 5581 U-CCCUGCCC CU|UGUA-CA CACCGCCCGU CGCUCC-U-A CC-GAC--UG GG-CGCggc- 5641 ggc-gagc-- gcc-ccgga- ---------- ---------- ---------- ---------- 5701 -------(cg cg--c-)--- ---------- ---------- ---------- ---------- 5761 ---------- --gaa-|ggg -ccgcgagcc cc-cgc-g-c cugg-AGGAA GG-AGAA-G- 5821 UCGUAACAAG GU-------- -----A-U-C CGUAGG(UGA A)CCUGCGGA UGGAUCC--- 5881 --ucua~~~~ ~~~~~~~~|| ||| // LOCUS G.intest.4 5903 bp RNA RNA 06-JAN-1988 DEFINITION Giardia intestinalis subsp. was Giardia lamblia. ACCESSION No information KEYWORDS No information. SOURCE Giardia intestinalis subsp. was Giardia lamblia. ORGANISM Giardia intestinalis. REFERENCE 1 AUTHORS No information JOURNAL June 6, 1988 STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: X05396 LOCUS GLARRN58S 651 bp ds-DNA INV 15-MAR-1988 DEFINITION Giardia lamblia rDNA for 5.8S rRNA and part of LSRNA and SSRNA. ACCESSION X05396 Y00331 KEYWORDS 5.8S ribosomal RNA; ribosomal DNA ; ribosomal RNA large subunit; ribosomal RNA small subunit. SOURCE Giardia lamblia. ORGANISM Giardia lamblia Eukaryota; Protozoa; Flagellata; Polymastigina. REFERENCE 1 (bases 1 to 651; enum. 1 to 651) AUTHORS Boothroyd,J. TITLE ; JOURNAL Unpublished (1987) Standford U, Standford CA 94305, U.S.A.. STANDARD simple automatic REFERENCE 2 (bases 1 to 651; enum. 1 to 651) AUTHORS Boothroyd,J.C., Wang,A., Campbell,D.A. and Wang,C.C. TITLE An unusually compact ribosomal DNA repeat in the protozoan Giardia lamblia JOURNAL Nucl Acid Res 15, 4065-4084 (1987) STANDARD simple automatic COMMENT *source: strain=Portland 1; FEATURES from to/span description rRNA < 1 339 put. small subunit rRNA (3'end) rRNA 381 518 5.8S rRNA rRNA 574 > 651 large subunit rRNA BASE COUNT 91 a 261 c 246 g 53 t ORIGIN BASE COUNT 50 a 128 c 126 g 36 t 5563 others ORIGIN 1 |--------- n......... ...(...).. ..|......- .-........ --........ 61 ....|-.... ..-....... .-.....-.. ..|....... |.......(. ...)[..... 121 .......... .......... .......... ---------- -....-.... ...]...... 181 .....|.... ..|......- .....-.... ....-....- ...-....-- ----...... 241 ....<----- ---------- -----..... .......... .......... .......... 301 .>......-. .........( -......).. .........- .......... ....(....) 361 .......... .......(.. ..)..|.... ..<....... .......... .......... 421 .......... .......... .......... .......... .......... .......... 481 .......... .......... .......... .......... .......... .......... 541 .......... .......... .......... --........ --------.. .......... 601 ...------- ---------- ---....-.. ....--|... .........- -........- 661 .......... .--....... .........- ---------- ---------- ---------- 721 -----..... .......... .-.....--. ....-..... -----..... ..--...... 781 .......... ....------ ---------- ---------- ---------- ---------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 ---------- ---------- -----..... .......... ........-. .....----- 1021 -|...-.... -...-..... ........-- ---------- --........ .....-.... 1081 .........> .......... -..|...... ..|....... ...--..... .-.......- 1141 ..(....... .)........ .-|.....-. ...|....-. ......|... ..-(.....) 1201 ...-.....- ...|...... .-....(.-. ......)... ....-..... (....-)... 1261 .......-.- ---------| .......... .....-.... -........( ........). 1321 ....-.-... -|.|...... ....-..... .......... .(....)... .......... 1381 |....|.... .......... ........(. ......)... .......... .......... 1441 .......... .........- .....(..-- --.....).. .....-.... .-........ 1501 .......... ----...... -....-.... .-----..-. .-........ .---->.... 1561 ....|..-.. .-..-..... .-.(...-.. -....|..-. ..-..).... ..-|...... 1621 .-......|. .....--... .....-...| .......... .......... |......... 1681 .|........ .......... ..(.....). .......... .......... .|.......< 1741 .......... .-....-... ......--.- ..-....... ......-... ---------- 1801 ---------- ------.-.- ......-.-- -......... ......-... ..-------- 1861 .......... .-........ .......... .......... .......... .....----- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ------.... .......... .......... .......... .......... .......... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... .......... .......... .........- .......-.. .......... 2161 .......--- ---------- ---------- ---....... ....------ ---------- 2221 ----...... .......... .......... .......... .......... .......... 2281 .......... .......... .......... .......... .......... .......... 2341 .......... .......... ....------ ---------- ---------- ---------- 2401 ---------- ---------- ---------- ----...... .......... ..-....--. 2461 .......... ........-. .........- -------.-- ---------- -......... 2521 .......... ....-.--.. ......-... .......|.. .......-.. .......... 2581 ....------ ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ------.... .......... ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- --..|..... 2821 --.-...... .......... .--......- .......... .--....... ..--->.... 2881 .......... .......... .......... .......... .......... .......... 2941 .......... .......... .......... .......... .....|.... ---------- 3001 -......... ..|--..... .......... -....(..-. ...---)... ........-. 3061 .....-...- .-......-. ....(-.... )--..|.... ......-..| ..-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------... ---....... -...-.|... .......... 3301 .........- .........( ....------ ---------- ---------- ---------- 3361 ---------- .....)..-. -.....|... .......-.. .......... ...|..|--- 3421 --........ ...-.-.-.. ...-(..... .........) .......... .......... 3481 .......... .......... .......... .......... .......... .......... 3541 .......... .......... -----..... .......... .....----- ---....... 3601 .......... .......... ....-..... .......... .......... ........(- 3661 ....-).... .......... ....|-.|.- .......... ..--.....( --.....).. 3721 ...-...... -....--... ....|..-.. -..-.....- -....-.... ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --.-..|-.. 4021 ........|. ..-....... (......-.. )....--... .......... ..[...-... 4081 ....-..... ..-----... ...(...... .-.)------ .....----- ...-....-. 4141 .......... .]........ |......... .....(.... )......... ...(....). 4201 ...|...... ...|...... ...-.-.... |...|..... ...|.....- .|...(.... 4261 .-)......- -...(..-.. ..)....... ..-....... ........|. .......... 4321 ......(... ..)[...-.. .......... .--....... .......... .......... 4381 ...--..... .---...... .......... ...-...... .......... -......... 4441 --........ .......... .......... .......... ..-------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ------.... .......... 4621 .......... .......... .......... .......... .......... .......... 4681 .......... .......... .......... .......... .......... .......... 4741 .......... .......... .......... .........- ..-------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------. ........]. ..|----... .......... ....-...-. ..-.(----- 5041 -......-). ...G-G-AGG ACGG-CGGGG CGAUAG--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UG A|UGCC|CU- 5221 C-AGA-CGCC CUGG--C-GC A-CGCGCGCU ACACU--G-G CGGGG----- ---------- 5281 ---(------ ----)[ccag ---------- ---------- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- ---------- ---------- 5401 ---ccgg-cg -cc(gcga-) ggacgc--gc gg-------- ---agc]--- ---------- 5461 -------ccc cgc-C-G--- UGGC-C-GGG ACGCG-GGC( UGGAA--C)G CCCCCGCG-C 5521 ACCAGG-AAU G--UCUUGU- GG-CGC-CCG (-CCCCCAC- )CGCGC-G-C -CGGACGCG- 5581 U-CCCUGCCC CU|UGUA-CA CACCGCCCGU CGCUCC-U-A CC-GAC--UG GG-CGCggc- 5641 ggc-gagc-- gcc-ccgga- ---------- ---------- ---------- ---------- 5701 -------(cg cg--c-)--- ---------- ---------- ---------- ---------- 5761 ---------- --gaa-|ggg -ccgcgagcc cc-cgc-g-c cugg-AGGAA GG-AGAA-G- 5821 UCGUAACAAG GU-------- -----A-U-C CGUAGG(UGA A)CCUGCGGA UGGAUCC--- 5881 --CUCG.... .......~|| ||| // LOCUS G.muris1 5903 bp RNA RNA 30-JUN-1993 DEFINITION Giardia muris. ACCESSION No information KEYWORDS No information. SOURCE Giardia muris. ORGANISM Giardia muris. REFERENCE 1 AUTHORS van Keulen,H., Gutell,R.R., Campbell,S.R., Erlandsen,S.L. and TITLE The nucleotide sequence of the entire ribosomal DNA operon and JOURNAL J. Mol. Evol. 35, 318-328 (1992) STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: X65063 Sequence of Giardia muris rDNA repeat. H. van Keulen small subunit: 2098 - 3527 5.8S: 3555 ~ 3676 large subunit:3733 - 6421 BASE COUNT 350 a 345 c 501 g 236 t 4471 others ORIGIN 1 |--------- -----CAUCC GGU(UGA)UC CU|GCCGGA- G-UA-C-UAC --GCUA-CCC 61 CAAG|-GACA AAAGCCAUGC A-AGCgg-ac ac|------- |-------(- ---)[----- 121 ---------- ---------- ---------- ---------- -ga-g-guau gaa]------ 181 -----|---g ug|G-CGGA- CGGCU-CGGU ACAa-cggu- acg-aguc-- ----ugaccg 241 gggg<----- ---------- ---------- ---------- ---------- ---ugaaggc 301 u>agacgg-a uacCGCUGG( -c-a-ac)CC AGCGc-caa- gacgag---- ----(----) 361 ---------- -------(-- --)--|---- --<------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ------|--- ---------- ---------- 661 ---------- --------ug cucaa----- ---------- ---------- ---------- 721 -------gag cg-gggaagg a-aagca--c gcga-uggag cgaa------ ---------- 781 ---------- ---------- ---------- ---------- ---------- ---------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 ---------- ---------- ---------- ---------- ---------- ---------- 1021 -|-------- ---------- ---------- ---------- ---------- ---------- 1081 ---------> -ugcccggau -ga|gguucc ga|--GGU-A UUA--CCUA- --GUCGGUA- 1141 GA(-GUAGUG G)UCU-ACGG A-|GGGGA-U GAU|GCCU-G G-CGGA|GGA -U-(CAGG-) 1201 GUU-UGACU- CCG|GAGAAC G-GGCC(U-G AGAGAC)GGC CCGU-ACAUC (CAAG-)GAC 1261 -GGCAGC-A- ---------| GGC-GC-GG- AACUU-GCCC -AAUGCG-U( --gaag--)G 1321 CGUG-A-GGC -|A|GCAACG GGGG-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 ---------- ---------- cccau(---- ----gaa)au ggg------- ---------- 1501 ----aaGAcu ----gggg-g -guag--aug a-----cc-c cagca-c--- ----->AAGU 1561 CGAG|GG-AA AGGU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCGGC 1621 A-GGCGUC|G UACGG--CGC UGUUG-CAG| UUA--AAACG UCCGGAGUCG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 agacg-ucca g-ccgg-gag gaaaga--g- ga-gcgcuua aggcgg-gag ---------- 1801 ---------- ------u--- ---------- ---------- ---------- ---------- 1861 ---------- -----gagua cgagaaagcc cgggacggac augaagg--- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- -------|-- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ----|----- 2821 ---------- ---------- ---------- ---------- ---------- ----->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -UGAA|UGGG ---------- 3001 --UAAGGGCA UG|--UGUAU UGGUGGG-GG -ACGG(GU-G AAA---)UAG G-AUGA-U-C 3061 CGACC-AAG- A-CAGACA-A AGGC(-GUAG )--GC|A--- CUUGCC-AA| GA-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------CCA ---UAUCAGU -CGA-A|CC- A-GGACGAAG 3301 CCCGGGGGC- GAGAAGGCG( AUUA------ ---------- ---------- ---------- 3361 ---------- GACAC)CA-C -CGUAU|UCC CG--GGC-GU AAACGAUGCC ACC|GA|--- 3421 --gagac-ug gc-------- ----(----c agguc----) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---g-uca-g -g-aucg--- ---------- ----aaGG(- 3661 GAAA-)CCGA ucAGGG-uac gGGC|-U|C- UGGGGGGAGU AU--GG-CC( --GCAA-)GG 3721 CUG-GAACUU -GAAG--GCA -UUG|AC-GG -AG-GGGUA- -CCAC-CAGA ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --C-GU|-GG 4021 AGUCUGCG|G CU-CAAUUUG (ACUCAA-CG )CGAA--CA- CCUUACCAGG CC[cag-acg 4081 uacg-gagga uc-----gac ggu(u-gaga g-g)------ accuu----- cgu-gauc-g 4141 uacgag---- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU-G-CAUG |GCC|GU-UC ACA|GCCCG- U|GGC(-UUG 4261 A-)GCCGUC- -UGC(UU-GA CU)GCGACA- AC-GAGCGAG ACCCU-AA|- ---------- 4321 ------(--- --)[cc---- ---------- ---------- ---------u ggau------ 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- ---------- ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ------gg]- --|------- ---------- GACC-Gcc-a -a-u(----- 5041 --gguga-)a uugg-A-GGA -AGG-UGGGG CGAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UG A|UGCC|CU- 5221 U-AGA-CGCC CUGG-GCUGC A-CGCGUACU ACACU--G-U GGGGA----- ---------- 5281 ---(------ ----)[ugaa acca------ ---------- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- ---------- ---------- 5401 ---cguc-ga guu(guga-) agcuug--au g--------a gaucaa]--- ---------- 5461 -------ccc cca-C-G--- UGGU-U-GGG AUCGUGGAC( UGGAA--C)G UCCUCGUG-A 5521 ACCUGG-AAU G--UCUAGUA GG-CGU-AGG (-UCAUCAA- )UCUAC-G-C -CGGAUACG- 5581 U-CCCUGCCC CU|UGUA-CA CACCGCCCGU CGCUCC-U-A CC-GAC--UG GG-UCUucu- 5641 ggc-gagc-- ucc-uggga- gg-------- ---------- ---------- ---------- 5701 -------(ga ug--aa)--- ---------- ---------- ---------- ---------- 5761 ---------c -cgaa-|cag -ggacgaacc gc-gag-g-c uugg-AGGAA GG-AGAA-G- 5821 UCGUAACAAG GU-------- -----A-U-C CGUAGG(UGA A)CCUGCGGA UGGAUCC--- 5881 --aucg~~~~ ~~~~~~~~|| ||| // LOCUS H.inflata 5903 bp RNA RNA 11-JAN-191 DEFINITION Hexamita inflata. ACCESSION No information KEYWORDS No information. SOURCE Hexamita inflata. ORGANISM Hexamita inflata. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: L07836 LOCUS HXM16RR 1544 bp ss-rRNA RNA 01-JUN-1993 DEFINITION Hexamita inflata small subunit (16S-like) ribosomal RNA sequence. ACCESSION L07836 KEYWORDS 16S ribosomal RNA; small subunit ribosomal RNA. SOURCE Hexamita inflata (library: ATCC 50268) rRNA. ORGANISM Hexamita inflata Eukaryota; Animalia; Protozoa; Sarcomastigophora; Mastigophora; Zoomastigophora; Diplomonadida; Diplomonadina; Hexamitidae. REFERENCE 1 (sites) AUTHORS Leipe,D.D., Gunderson,J.H., Nerad,T.A. and Sogin,M.L. TITLE Small subunit ribosomal RNA of Hexamita inflata and the quest for the first branch in the eukaryotic tree JOURNAL Mol. Biochem. Parasitol. 59, 41-48 (1993) STANDARD full automatic FEATURES Location/Qualifiers source 1..1544 /organism="Hexamita inflata" /sequenced_mol="rRNA" /tissue_lib="ATCC 50268" BASE COUNT 389 a 341 c 447 g 359 t 8 others ORIGIN BASE COUNT 389 a 341 c 447 g 359 t 4367 others ORIGIN 1 |--------- -----AACCU GGU(CGA)UC CU|GCCAGR- A-GG-G--AA --GCUAAGAU 61 UAAG|-GAUU AA-GCCAUGC A-UGCC--AG GU|------- |-------(- ---)[----- 121 ---------- ---------- auaagcuaau ---------- -acac-aggu gaa]------ 181 -----|---A CU|G-CGAA- CGGCU-CAUU AAAu-cagu- uga-aaug-- ----ucucgu 241 gcuu<----- ---------- ---------- ---------- ---------- ----uauucg 301 u>agucgg-c uaauacggg( -c-a-ac)uc ucuua-cua- aucgug---- ----(----) 361 ---------- -------(-- --)--|---- --<------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ------|--- ---------- ---------- 661 ----cuucgu u--acaucgg uagugaga(- ---------- ---------- ---------- 721 -----gcga- -)ucucg--- ---------- ---------- -------ggu ug--auuuay 781 g-uuguaaaa auga------ ---------- ---------- ---------- ---------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 ---------- ---------- -----cuguu aggc------ ---------- ---------- 1021 -|-------- ---------- ---------- ---------- ---------- ---------- 1081 ---------> -aggcacgau -ca|gcuucu ga|--CGC-A UCA--UUAA- --GUAGGAG- 1141 AA(-GUAAAG G)UUA-UCCU A-|UGAGU-U CAC|GCGU-A C--GGA|GAA -U-(UAGG-) 1201 GUU-CGACU- CCG|GAGAAU G-AGCA(U-G AGAGAC)GGC UCAU-AGUUC (UAAG-)GGA 1261 -GGCAGC-A- ---------| GGC-GC-GG- AAAUU-GCCC -AAUGUA-C( --aaac--)G 1321 UACG-A-GGC -|A|GUGACG AAAA-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 ---------- ---cuugu-- ccggc(---- ---uuag)gc cggua-uuaa g--------- 1501 ----cugagy ----gaag-g -ygy---acc a-----ca-u cgcga-acgc ----->AAUU 1561 AGUG|GG-AG A-GC-A-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AU-|CACUGA 1621 U-AGCUUU|C UCUUA--CGU UGUUG-CAG| UUA--AAAAG CUCGUAGCCG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 uu----guua g-cccc-gcg ugucac--u- uu-gagaaaa ucggag-ugu ---------- 1801 ---------- ------u-c- auuaca-g-- -ggaaaccgc ugcaca-gua ca-------- 1861 gcaaagaaug a-cauugcuc cccggcgacg ggggguacgg aguaua---- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- -------|-- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---------- ----->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -UGGC|GGCG ---------- 3001 --CGGGACUG AU|--AGUAU UUGGUGG-GG -ACAG(GU-G AAA---)UAG G-AUGA-U-C 3061 CACCA-AGG- A-CUUUCA-A CAGC(-GAAG )--GC|A--- GUCGGU-AA| GC-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------GCC ---GUCCAGY -UGG-U|CA- A-GAGCGAAA 3301 GUGUGAGGA- UAGACGAUG( AUUA------ ---------- ---------- ---------- 3361 ---------- GAAAC)CG-U -UUUAU|UUC AC--GCC-UU AAACGAUACC AUC|UC|--- 3421 --agaag-cg ggc-u----- ----(----- caga-----) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- a-gu-ccg-c -a-ucuc--- ---------- ----aagg(- 3661 gaaa-)ccgc -aAGGU-uuc gGGU|-U|C- UGGGGGAAGU AU--GA-UU( --GCAA-)GA 3721 UUG-AAACUU -GAAG--GUA -UUG|AC-GG -AA-AGAUA- -CCAC-AAGA ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --C-GU|-GG 4021 AGUCUGCG|G CU-CAAUUUG (ACUCAA-CA )CGCA--AA- UCUUACCAGA CC[cag-aug 4081 cuuu-acgga gc-----aac aga(uuaaga g-u)------ ucuuu----- ugc-gauu-g 4141 ggcagu---- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU-G-CAUG |GCC|GC-UC CUA|GUUCG- U|GGU(-GUA 4261 A-)ACUGUC- -UGC(CU-UA UU)GCGUUA- AC-GAGCGAG ACAAC-CA|- ---------- 4321 ------(--- --)[ccccca ---------- ---------- ---------g cc-------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- ---------- ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- --uggggg]- --|------- ---------- GAGC-Gcc-u -g-c(----- 5041 --guuga-)g cagg-A-CGA AYGU-GGUUG CUCUAG--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UG A|UGCC|CU- 5221 U-AGA-CACU CUGG-GCCGC A-CGCGUACU ACAAU--G-U CGGCU----- ---------- 5281 ---(------ ----)[rcac agccggu--- ---------- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- ---------- ---------- 5401 --ucgcc-cg gcc(ugaa-) ggcccg--gc cauu---cgu gugaac]--- ---------- 5461 -------cgc cga-c-g--- UGGU-A-GGG AUCGGAGAU( UGGAAUUU)U UCUCCGUG-A 5521 ACGAGG-AAU G--UCUUGUA GG-UCU-GCG (-UUAUUAG- )CGCGG-G-C -UGACUAUG- 5581 U-CCCUGUCU UU|UGUA-CA CACCGCCCGU CGCUCC-U-A CC-GAC-UUG GA-UGUUuu- 5641 ggu-gagu-- ugu-ccaga- gugc-gcgc- c--------- ---------- ---------- 5701 -------(uc gc----)--- ---------- ---------- ---------- ---------- 5761 -ggcau-gca -cgaa-|guu -cugcgaacc cc-aau-g-u cugg-AGGAA GG-AGAA-G- 5821 UCGUAACAAG GC-------- -----U-G-C UGUAGG(UGA A)CCUGCAGA AGGAUC~~~~ 5881 ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS (2)-Entamo 5903 bp RNA RNA 29-JAN-1996 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: DIVIDER BASE COUNT 0 a 0 c 0 g 0 t 5903 others ORIGIN 1 |......... .......... .......... .......... .-........ .......... 61 .......... .......... .-........ ..|....... |......... .......... 121 .......... .......... .......... .......... .....-.... .......... 181 .......... ..|....... .......... .......... .......... .......... 241 .......... .......... .......... .......... .......... .......... 301 .......... .......... .......... .......... .......... .......... 361 .......... .......... .......... .......... .......... .......... 421 .......... .......... .......... .......... .......... .......... 481 .......... .......... .......... .......... .......... .......... 541 .......... .......... .......... .......... .......... .......... 601 .......... .......... .......... .......... .......... .......... 661 .......... .......... .......... .......... .......... .......... 721 .......... .......... .......... .......... .......... .......... 781 .......... .......... .......... .......... .......... .......... 841 .......... .......... .......... .......... .......... .......... 901 .......... .......... .......... .......... .......... .......... 961 .......... .......... .......... .......... .......... .......... 1021 .......... .......... .......... .......... .......... .......... 1081 .......... .......... ...|...... .......... .......... .-........ 1141 .......... .......... .......... ...|...... .......... .......... 1201 .......... .......... .......... .......... ....-..... .....-.... 1261 .......... .........| .......... .......... .......... .......... 1321 .......... .|........ ....-..... .......... .......... .......... 1381 .....|.... .......... .......... .......... .......... .......... 1441 .......... .......... .......... .......... .......... .......... 1501 .......... .......... .......... .-----.... .......... .....>.... 1561 .......... .......... .......... .......... .......... ..-|...... 1621 ........|. .......... .........| .......... .......... .......... 1681 .......... .......... .......... .......... .......... .|........ 1741 .......... .-........ .......... .......... ......-... .......... 1801 ..-....... ..-....-.. .......... .......... .......... .......... 1861 .......... .-........ .......... .......... .......... .......... 1921 .......... .......... .......... .......... .......... .......... 1981 .......... .......... .......... .......... .......... .......... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... .......... .......... .......... .......... .......... 2161 .......... .......... .......... .......... .......... .......... 2221 .......... .......... .......... .......... .......... .......... 2281 .......... .......... .......... .......... .......... .......... 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... ....-..... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... .......... 2701 .......... .......... .......... .......... .......... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ..---..... 2881 .......... .......... .......... .......... .......... .......... 2941 .......... .......... .......... .......... .....|.... .......... 3001 .......... ...--..... .......... .......... .......... .......... 3061 .......... .......... .......... .....|.... .........| ..-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------... .......... ....-.|... .......... 3301 .......... .......... ....------ ---------- ---------- ---------- 3361 ---------. .......... .......... .......... .......... ...|...... 3421 .......... .......... .......... .......... .......... .......... 3481 .......... .......... .......... .......... .......... .......... 3541 .......... .......... .......... .......... .......... .......... 3601 .......... .......... .......... .......... .......... .......... 3661 .......... .......... .......|.. .......... .......... .......... 3721 .......... -......... ....|..... .......... .......... ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --....|... 4021 ........|. .......... .......-.. .......... .......... .......... 4081 .......... ..-----... .......... .-..--.... .....----- ...-...... 4141 .......... .]........ |......... .......... .......... .......... 4201 .......... ...|...... .......... ....|..... .........- .......... 4261 .-........ .......... .......... ..-....... .......... .......... 4321 .......... .......... .......... .......... .......... .......... 4381 .......... .......... .......... ...-...... .......... .......... 4441 --........ .......... .......... .......... .......... .......... 4501 .......... .......... .......... .......... .......... .......... 4561 .......... .......... .......... .......... .......... .......... 4621 .......... .......... .......... .......... .......... .......... 4681 .......... .......... .......... .......... .......... .......... 4741 .......... .......... .......... .......... .......... .......... 4801 .......... .......... .......... .......... .......... .......... 4861 .......... .......... .......... .......... .......... .......... 4921 .......... .......... .......... .......... .......... .......... 4981 .......... .......... .......... .......... .......... .......... 5041 .......... .......... .......... .......... ...------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ---....... .|....|... 5221 .......... .......... .......... .......... .......... .......... 5281 ....-..... .......... .......... .......... .......... .......... 5341 .......... .......... .......... .......... .......... .......... 5401 .......... .......... .......... .......... .......... .......... 5461 .......... .....-..-- ....-.-... .......... .......... .......... 5521 .......... .-........ .......... .-........ .......... .......... 5581 .......... ..|....... .......... .......... .......... .......... 5641 ...-.....- .......... .......... .......... .......... .......... 5701 ......-... .......... .......... .......... .......... ........-. 5761 .......... ......|... .......... .......... .......... .......... 5821 .......... .......... .......... .......... .......... .......... 5881 .......... ........|| ||| // LOCUS E.histol.1 5903 bp RNA RNA 11-JAN-191 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: X65163 ID EHRRNA standard; RNA; INV; 6331 BP. XX AC X65163; XX DT 25-APR-1993 (Rel. 35, Created) DT 25-APR-1993 (Rel. 35, Last updated, Version 2) XX DE E.histolytica rRNA XX KW 18S ribosomal RNA; 28S ribosomal RNA; 5.8S ribosomal RNA; KW ribosomal RNA. XX OS Entamoeba histolytica OC Eukaryota; Animalia; Protozoa; Sarcomastigophora; Sarcodina; OC Rhizopoda; Lobosa; Gymnamoeba; Schizopyrenida; Tubulina; OC Entamoebidae. XX RN [1] RP 1-6331 RA Bhattacharya S.; RT ; RL Submitted (17-MAR-1992) on tape to the EMBL Data Library by: RL S. Bhattacharya, Jawaharlal Nehru University, School of RL Enviromental Sciences, New Dehli, 110067, INDIA XX RN [2] RP 1-6331 RA Ramachandran S., Bhattacharya A., Bhattacharya S.; RT "Nucleotide sequence analysis of the rRNA transcription unit of a RT pathogenic Entamoeba histolytica strain HM-EIMSS"; RL Nucleic Acids Res. 21:2011-2011(1993). XX FH Key Location/Qualifiers FH FT source 1..6331 FT /organism="Entamoeba histolytica" FT /strain="HM 1-IMSS" FT /dev_stage="trophozoites" FT /clone="p(ssrnag),pHM-a,pLSrnaE1,plsrnaE2,plsrnaE3" FT /isolate="Clone-6" FT rRNA 522..2467 FT /product="18S ribosomal RNA" FT misc_feature 2468..2590 FT /note="transcribed spacer sequence 1" FT rRNA 2591..2740 FT /product="5.8S ribosomal RNA" FT misc_feature 2741..2865 FT /note="transcribed spacer sequence 2" FT rRNA 2866..6331 FT /product="28S ribosomal RNA" XX SQ Sequence 6331 BP; 2415 A; 813 C; 1302 G; 1792 T; 9 other; BASE COUNT 662 a 294 c 441 g 546 t 3960 others ORIGIN 1 |--------- -----UAUCU GGU(UGA)UC CU|GCCAGU- A-UU-A-UAU --GCUGAUGU 61 UAAA|-GAUU AA-GCCAUGC A-UGUGU-AA GU|------- |-------(- ---)[----- 121 ---------- --------au aaagacc-aa ---------- -gu-a-ggau gaa]------ 181 -----|---A CU|G-CGGA- CGGCU-CAUU AUAA-cagu- aau-aguu-- ----ucuuug 241 guua<----- ---------- ---------- ---------- ---------- ----guaaaa 301 u>ACAAGG-A UAGCUUUGU( -g-aaug)AU AAAGA-UAA- UACUUG---- ----(----) 361 ---------- -------(-- --)--|---- -- -aaccaauga -ga|auuucu ga|--UCU-A UCA--AUCA- --GUUGGUA- 1141 GU(-AUCGAG G)ACU-ACCA A-|GAUUA-U AAC|GGAU-A A-CGAG|GAA -U-(UGGG-) 1201 GUU-CGACA- UCG|GAGAGG G-AGCU(U-U ACAGAU)GGC UACC-ACUUC (UAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-SC-GU- AAAUU-ACCC -ACUUUC-G( ---aau--)U 1321 GAAG-A-GGU -|A|GUGACG ACAC-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AA CUcuagagu- --uga(---- -guaaaa)uc a--au-ucuu g-aAGGAAU- 1501 ------GAgu ----aggag- -guaa-a-uu c-----uc-c uacGA-AAUC ----->AAUU 1561 GGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCCAA 1621 U-AGUGUA|U AUUAA--AGU UGCUG-UGA| UUA--AAACG CUCGUAGUUG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 aauuaaaaug u-gguu-uua uacauu--uu ga-agacuuu auguaa-gua ---------- 1801 ---------- -----aa-g- uuucua-gaa -auguuaaau uaaaau-caa ag-------- 1861 aaggaaacaa u-ucaaguaa uugaguuguu auuacuuuga auaaaauaag guguu----- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ------uaaa gcaaaacauu auguuaauga auauucaagc augggacaau gcugagggga 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- --------u- gucaaua-ag acauuuc--- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---g-agaga a--ggauuaa aa--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGAA|CAAU ---------- 3001 --UGGGGUGA UU|--CAGAA AAUAACG-GG -AGAG(GU-G AAA---)AUC C-AUGA-U-C 3061 GCUAU-AAG- A-UGCACG-A GAGC(-GAAA )--GC|A--- UUUCAC-UC| AA-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------CUG ---UGUCCAU -UAA-U|CA- A-GAACGAAA 3301 GUUAGGGGA- UCGAAGACG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CGUAG|UCC UA--ACU-AU AAACGAUGUC AAC|CA|--- 3421 --aggau-ug gau-g-a--- ----(----- ---------) aauucagaug uacaaagaua 3481 gagaagc(au u)guuucuag aucugaguau aucaauauua cc-------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------u u-gu-uca-g aa-cuua--- ---------- ----aaGA(- 3661 GAAA-)UCu- ugAGUU-uau gGAC|-u|u- caGGGGGAGU AU--GG-UC( --ACAA-)GG 3721 CUG-AAACUU -AAAG--GAA -UUG|AC-GG -AA-GGGCA- --CAC-CAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --A-GU|-GG 4021 AGCCUGCG|- CU-UAAUUUG (ACUCAA-CA )CGGG--AAA ACUUACCAAG AC[cga-aca 4081 guag-aagga au-----gac aga(uuaaga g-u)------ ucuuu----- cau-gauu-u 4141 auuggg---- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UA-GU- GGU-G-CAUG |GCC|GU-UC UUA|GUUGG- U|GGA(-GUG 4261 A-)UUUGUC- -AGG(UU-AA UU)CCGGUA- AC-GAACGAG ACUGA-AA|- ---------- 4321 ------(--- --)[CCU-AU UAAUUAGuuu u--cugccua uaagacagaa augu-ucgca 4381 aga--acagg u---gc-gua a--------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------g uaccacuucu uaaagggaca cauuucaa-- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ----uugucc uau------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------u uuaauugu]a gu|uaucuaa uuucgguua> GACC-Ucu-u -u-u(aacgu 5041 gggaaaaa)g aaaa-A-GGA AGCA-UUCAG CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UG A|UGCC|CU- 5221 U-AGA-CAUC UUGG-GCCGC A-CSCSCGCU ACAAU--G-g aguua----- ---------- 5281 ---(------ ----)[cuag agaguau--- ---------- -----uu--- --uaucauuu 5341 -acaccuuau uuauuaggc( --uuu)gucu aauaauuaag gauaguaagu ggug------ 5401 --uaccg-ag auu(gaaau) aguuaa--gg aaaa---cuc a--aaa]--- ---------- 5461 -------gaa cguac-a--- uGAC-A-GGG AUAAAUGAU( UGGAAUUA)U UUGUUUUG-A 5521 ACGAGG-AAU U--CCUUGUA AU-AUC-GAG (-UCAUUAA- )CUCGA-G-A -UGAAUACG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUCC-U-A CC-GAU--ug aa-uaaaga- 5641 ggu-gaaa-- uuc-uagga- uucu-gucu- ---------- ---------- ---------- 5701 -------(ua u-----)--- ---------- ---------- ---------- ---------- 5761 ---agauaga -aaaa-|ugg -auuuaaauc uc-cuu-a-u uuag-AGGAA GG-AGAA-G- 5821 UCGUAACAAG GU-------- -----U-U-C CGUAGG(UGA A)CCUGCGGA AGGAUCA--- 5881 --UUA----- -------~|| ||| // LOCUS E.histol.2 5903 bp RNA RNA 11-JAN-191 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: X64142 ID EHGRNA standard; DNA; INV; 1946 BP. XX AC X64142; XX DT 25-APR-1993 (Rel. 35, Created) DT 25-APR-1993 (Rel. 35, Last updated, Version 2) XX DE E.histolytica gene for small subunit rRNA XX KW small subunit ribosomal RNA gene. XX OS Entamoeba histolytica OC Eukaryota; Animalia; Protozoa; Sarcomastigophora; Sarcodina; OC Rhizopoda; Lobosa; Gymnamoeba; Schizopyrenida; Tubulina; OC Entamoebidae. XX RN [1] RP 1-1946 RA Bhattacharya S.; RT ; RL Submitted (17-JAN-1992) on tape to the EMBL Data Library by: RL S. Bhattacharya, Jawaharlal Nehru University, School of RL Environmental Sciences, New Delhi 110 067, INDIA XX RN [2] RP 1-1946 RA Ramachandran S., Bhattacharya A., Bhattacharya S.; RT "Nucleotide sequence analysis of the rRNA transcription unit of a RT pathogenic Entamoeba histolytica strain HM-EIMSS"; RL Nucleic Acids Res. 21:2011-2011(1993). XX FH Key Location/Qualifiers FH FT source 1..1946 FT /organism="Entamoeba histolytica" FT /strain="HM1:IMSS" FT /dev_stage="Trophozoite" FT /clone="p(ssrnag), pHM-a" FT /isolate="6" FT rRNA 1..1946 FT /product="small subunit rRNA" XX SQ Sequence 1946 BP; 662 A; 294 C; 441 G; 546 T; 3 other; BASE COUNT 662 a 294 c 441 g 546 t 3960 others ORIGIN 1 |--------- -----UAUCU GGU(UGA)UC CU|GCCAGU- A-UU-A-UAU --GCUGAUGU 61 UAAA|-GAUU AA-GCCAUGC A-UGUGU-AA GU|------- |-------(- ---)[----- 121 ---------- --------au aaagacc-aa ---------- -gu-a-ggau gaa]------ 181 -----|---A CU|G-CGGA- CGGCU-CAUU AUAA-cagu- aau-aguu-- ----ucuuug 241 guua<----- ---------- ---------- ---------- ---------- ----guaaaa 301 u>ACAAGG-A UAGCUUUGU( -g-aaug)AU AAAGA-UAA- UACUUG---- ----(----) 361 ---------- -------(-- --)--|---- -- -aaccaauga -ga|auuucu ga|--UCU-A UCA--AUCA- --GUUGGUA- 1141 GU(-AUCGAG G)ACU-ACCA A-|GAUUA-U AAC|GGAU-A A-CGAG|GAA -U-(UGGG-) 1201 GUU-CGACA- UCG|GAGAGG G-AGCU(U-U ACAGAU)GGC UACC-ACUUC (UAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-SC-GU- AAAUU-ACCC -ACUUUC-G( ---aau--)U 1321 GAAG-A-GGU -|A|GUGACG ACAC-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AA CUcuagagu- --uga(---- -guaaaa)uc a--au-ucuu g-aAGGAAU- 1501 ------GAgu ----aggag- -guaa-a-uu c-----uc-c uacGA-AAUC ----->AAUU 1561 GGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCCAA 1621 U-AGUGUA|U AUUAA--AGU UGCUG-UGA| UUA--AAACG CUCGUAGUUG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 aauuaaaaug u-gguu-uua uacauu--uu ga-agacuuu auguaa-gua ---------- 1801 ---------- -----aa-g- uuucua-gaa -auguuaaau uaaaau-caa ag-------- 1861 aaggaaacaa u-ucaaguaa uugaguuguu auuacuuuga auaaaauaag guguu----- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ------uaaa gcaaaacauu auguuaauga auauucaagc augggacaau gcugagggga 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- --------u- gucaaua-ag acauuuc--- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---g-agaga a--ggauuaa aa--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGAA|CAAU ---------- 3001 --UGGGGUGA UU|--CAGAA AAUAACG-GG -AGAG(GU-G AAA---)AUC C-AUGA-U-C 3061 GCUAU-AAG- A-UGCACG-A GAGC(-GAAA )--GC|A--- UUUCAC-UC| AA-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------CUG ---UGUCCAU -UAA-U|CA- A-GAACGAAA 3301 GUUAGGGGA- UCGAAGACG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CGUAG|UCC UA--ACU-AU AAACGAUGUC AAC|CA|--- 3421 --aggau-ug gau-g-a--- ----(----- ---------) aauucagaug uacaaagaua 3481 gagaagc(au u)guuucuag aucugaguau aucaauauua cc-------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------u u-gu-uca-g aa-cuua--- ---------- ----aaGA(- 3661 GAAA-)UCu- ugAGUU-uau gGAC|-u|u- caGGGGGAGU AU--GG-UC( --ACAA-)GG 3721 CUG-AAACUU -AAAG--GAA -UUG|AC-GG -AA-GGGCA- --CAC-CAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --A-GU|-GG 4021 AGCCUGCG|- CU-UAAUUUG (ACUCAA-CA )CGGG--AAA ACUUACCAAG AC[cga-aca 4081 guag-aagga au-----gac aga(uuaaga g-u)------ ucuuu----- cau-gauu-u 4141 auuggg---- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UA-GU- GGU-G-CAUG |GCC|GU-UC UUA|GUUGG- U|GGA(-GUG 4261 A-)UUUGUC- -AGG(UU-AA UU)CCGGUA- AC-GAACGAG ACUGA-AA|- ---------- 4321 ------(--- --)[CCU-AU UAAUUAGuuu u--cugccua uaagacagaa augu-ucgca 4381 aga--acagg u---gc-gua a--------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------g uaccacuucu uaaagggaca cauuucaa-- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ----uugucc uau------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------u uuaauugu]a gu|uaucuaa uuucgguua> GACC-Ucu-u -u-u(aacgu 5041 gggaaaaa)g aaaa-A-GGA AGCA-UUCAG CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UG A|UGCC|CU- 5221 U-AGA-CAUC UUGG-GCCGC A-CSCSCGCU ACAAU--G-g aguua----- ---------- 5281 ---(------ ----)[cuag agaguau--- ---------- -----uu--- --uaucauuu 5341 -acaccuuau uuauuaggc( --uuu)gucu aauaauuaag gauaguaagu ggug------ 5401 --uaccg-ag auu(gaaau) aguuaa--gg aaaa---cuc a--aaa]--- ---------- 5461 -------gaa cguac-a--- uGAC-A-GGG AUAAAUGAU( UGGAAUUA)U UUGUUUUG-A 5521 ACGAGG-AAU U--CCUUGUA AU-AUC-GAG (-UCAUUAA- )CUCGA-G-A -UGAAUACG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUCC-U-A CC-GAU--ug aa-uaaaga- 5641 ggu-gaaa-- uuc-uagga- uucu-gucu- ---------- ---------- ---------- 5701 -------(ua u-----)--- ---------- ---------- ---------- ---------- 5761 ---agauaga -aaaa-|ugg -auuuaaauc uc-cuu-a-u uuag-AGGAA GG-AGAA-G- 5821 UCGUAACAAG GU-------- -----U-U-C CGUAGG(UGA A)CCUGCGGA AGGAUCA--- 5881 --UUA----- -------~|| ||| // LOCUS E.histol.3 5903 bp RNA RNA 11-JAN-191 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: X56991 ID EH16SRRNA standard; DNA; INV; 1947 BP. XX AC X56991; XX DT 29-OCT-1992 (Rel. 33, Created) DT 29-OCT-1992 (Rel. 33, Last updated, Version 1) XX DE E.histolytica gene for small subunit ribosomal RNA (16S-like) XX KW 16S ribosomal RNA homologue; ribosomal RNA; KW small subunit ribosomal RNA. XX OS Entamoeba histolytica OC Eukaryota; Animalia; Protozoa; Sarcomastigophora; Sarcodina; OC Rhizopoda; Lobosa; Gymnamoeba; Schizopyrenida; Tubulina; OC Entamoebidae. XX RN [1] RP 1-1947 RA Sogin M.L.; RT ; RL Submitted (14-DEC-1990) on tape to the EMBL Data Library by: RL M.L. Sogin, MARINE BIOLOGICAL LAB, CENTER FOR MOL EVOLUTION, WOODS RL HOLE MA 02543, U S A XX RN [2] RA Sogin M.L., Edman U., Elwood H.E., Agabian N.; RT "Small subunit ribosomal RNA from Entamoeba histolytica"; RL Unpublished. XX FH Key Location/Qualifiers FH FT rRNA 1..1947 FT /product="small subunit ribosomal RNA (16S-like)" XX SQ Sequence 1947 BP; 662 A; 294 C; 445 G; 546 T; 0 other; BASE COUNT 662 a 294 c 445 g 546 t 3956 others ORIGIN 1 |--------- -----UAUCU GGU(UGA)UC CU|GCCAGU- A-UU-A-UAU --GCUGAUGU 61 UAAA|-GAUU AA-GCCAUGC A-UGUGU-AA GU|------- |-------(- ---)[----- 121 ---------- --------au aaagacc-aa ---------- -gu-a-ggau gaa]------ 181 -----|---A CU|G-CGGA- CGGCU-CAUU AUAA-cagu- aau-aguu-- ----ucuuug 241 guua<----- ---------- ---------- ---------- ---------- ----guaaaa 301 u>ACAAGG-A UAGCUUUGU( -g-aaug)AU AAAGA-UAA- UACUUG---- ----(----) 361 ---------- -------(-- --)--|---- -- -aaccaauga -ga|auuucu ga|--UCU-A UCA--AUCA- --GUUGGUA- 1141 GU(-AUCGAG G)ACU-ACCA A-|GAUUA-U AAC|GGAU-A A-CGAG|GAA -U-(UGGG-) 1201 GUU-CGACA- UCG|GAGAGG G-AGCU(U-U ACAGAU)GGC UACC-ACUUC (UAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GU- AAAUU-ACCC -ACUUUC-G( ---aau--)U 1321 GAAG-A-GGU -|A|GUGACG ACAC-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AA CUcuagagu- --uga(---- -guaaaa)uc a--au-ucuu g-aAGGAAU- 1501 ------GAgu ----aggag- -guaa-a-uu c-----uc-c uacGA-AAUC ----->AAUU 1561 GGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCCAA 1621 U-AGUGUA|U AUUAA--AGU UGCUG-UGA| UUA--AAACG CUCGUAGUUG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 aauuaaaaug u-gguu-uua uacauu--uu ga-agacuuu auguaa-gua ---------- 1801 ---------- -----aa-g- uuucua-gaa -auguuaaau uaaaau-caa ag-------- 1861 aaggaaacaa u-ucaaguaa uugaguuguu auuacuuuga auaaaauaag guguu----- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ------uaaa gcaaaacauu auguuaauga auauucaagc augggacaau gcugagggga 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- --------u- gucaaua-ag acauuuc--- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---g-agaga a--ggauuaa aa--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGAA|CAAU ---------- 3001 --UGGGGUGA UU|--CAGAA AAUAACG-GG -AGAG(GU-G AAA---)AUC C-AUGA-U-C 3061 GCUAU-AAG- A-UGCACG-A GAGC(-GAAA )--GC|A--- UUUCAC-UC| AA-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------CUG ---UGUCCAU -UAA-U|CA- A-GAACGAAA 3301 GUUAGGGGA- UCGAAGACG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CGUAG|UCC UA--ACU-AU AAACGAUGUC AAC|CA|--- 3421 --aggau-ug gau-g-a--- ----(----- ---------) aauucagaug uacaaagaua 3481 gagaagc(au u)guuucuag aucugaguau aucaauauua cc-------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------u u-gu-uca-g aa-cuua--- ---------- ----aaGA(- 3661 GAAA-)UCu- ugAGUU-uau gGAC|-u|u- caGGGGGAGU AU--GG-UC( --ACAA-)GG 3721 CUG-AAACUU -AAAG--GAA -UUG|AC-GG -AA-GGGCA- --CAC-CAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --A-GU|-GG 4021 AGCCUGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--AAA ACUUACCAAG AC[cga-aca 4081 guag-aagga au-----gac aga(uuaaga g-u)------ ucuuu----- cau-gauu-u 4141 auuggg---- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UA-GU- GGU-G-CAUG |GCC|GU-UC UUA|GUUGG- U|GGA(-GUG 4261 A-)UUUGUC- -AGG(UU-AA UU)CCGGUA- AC-GAACGAG ACUGA-AA|- ---------- 4321 ------(--- --)[CCU-AU UAAUUAGuuu u--cugccua uaagacagaa augu-ucgca 4381 aga--acagg u---gc-gua a--------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------g uaccacuucu uaaagggaca cauuucaa-- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ----uugucc uau------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------u uuaauugu]a gu|uaucuaa uuucgguua> GACC-Ucu-u -u-u(aacgu 5041 gggaaaaa)g aaaa-A-GGA AGCA-UUCAG CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UG A|UGCC|CU- 5221 U-AGA-CAUC UUGG-GCCGC A-CGCGCGCU ACAAU--G-g aguua----- ---------- 5281 ---(------ ----)[cuag agaguau--- ---------- -----uu--- --uaucauuu 5341 -acaccuuau uuauuaggc( --uuu)gucu aauaauuaag gauaguaagu ggug------ 5401 --uaccg-ag auu(gaaau) aguuaa--gg aaaa---cuc a--aaa]--- ---------- 5461 -------gaa cguac-a--- uGAC-A-GGG AUAAAUGAU( UGGAAUUA)U UUGUUUUG-A 5521 ACGAGG-AAU U--CCUUGUA AU-AUC-GAG (-UCAUUAA- )CUCGA-G-A -UGAAUACG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUCC-U-A CC-GAU--ug aa-uaaaga- 5641 ggu-gaaa-- uuc-uagga- uucu-gucu- ---------- ---------- ---------- 5701 -------(ua u-----)--- ---------- ---------- ---------- ---------- 5761 ---agauaga -aaaa-|ugg -auuuaaauc uc-cuu-a-u uuag-AGGAA GG-AGAA-G- 5821 UCGUAACAAG GU-------- -----U-U-C CGUAGG(UGA A)CCUGCGGA AGGAUCA--- 5881 --UUA----- -------~|| ||| // LOCUS E.histol.4 5903 bp RNA RNA 11-JAN-191 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: X61116 LOCUS ENH18SRRNA 1496 bp ss-mRNA INV 23-OCT-1991 DEFINITION E.histolytica mRNA for small subunit ribosomal RNA ACCESSION X61116 KEYWORDS small subunit ribosomal RNA. SOURCE Entamoeba histolytica RNA. ORGANISM Entamoeba histolytica Eukaryota; Animalia; Protozoa; Sarcomastigophora; Sarcodina; Rhizopoda; Lobosa; Gymnamoeba; Schizopyrenida; Tubulina; Entamoebidae. REFERENCE 1 (bases 1 to 1496) AUTHORS Que,X. and Reed,S.G. TITLE Nucleotide sequence of a small subunit ribosomal RNA (16S-like rRNA) gene from Entamoeba histolytica: differentiation of pathogenic from nonpathogenic isolates JOURNAL Nucleic Acids Res. 19, 5438-5438 (1991) STANDARD full automatic COMMENT *source: strain=SD4; From EMBL entry EH18SRRNA; dated 11-OCT-1991. FEATURES Location/Qualifiers prim_transcript 1..1496 /evidence=EXPERIMENTAL rRNA 1128..1136 /product="small subunit ribosomal RNA" BASE COUNT 520 a 223 c 345 g 408 t ORIGIN BASE COUNT 520 a 223 c 345 g 408 t 4407 others ORIGIN 1 |--------c caccg----- ---(---)UC C-|G-CAGU- A-UU-A-UAU --GCUGAUGU 61 UAAA|-GAUU AA-GCCAUGC A-UGUGU-AA GU|------- |-------(- ---)[----- 121 ---------- --------au aaagacc-aa ---------- -gu-a-ggau gaa]------ 181 -----|---A CU|G-CGGA- CGGCU-CAUU AUAA-cagu- aau-aguu-- ----ucuuug 241 guua<----- ---------- ---------- ---------- ---------- ----guaaaa 301 u>ACAAGG-A UAGCUUUGU( -g-aaug)AU AAAGA-UAA- UACUUG---- ----(----) 361 ---------- -------(-- --)--|---- -- -aacca-uga -ga|auuucu ga|--UCU-A UCA--AUCA- --GUUGGUA- 1141 GU(-AUCGAG G)ACU-ACCA A-|G-UUA-U AAC|GGAU-A A-CGAG|GAA -U-(UGGC-) 1201 GUU-CGACA- UCG|GAGAGG G-AGCU(UUA CAGAUCGGAU UACC-ACUUC (UAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GU- AAAUU-ACCC -ACUUUC-G( ---aau--)U 1321 GAAG-A-GGU -|A|GUGACG ACAC-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AA CUcuagagu- --uga(---- -guaaaa)uc a--au-ucuu g-aAGGAAU- 1501 ------GAGU ----AGGAG- -guaa-a-uu c-----uc-c uacGA-AAUC ----->AAUU 1561 GGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCCAA 1621 U-AGUGUA|U AUUAA--AGU UGCUG-UGA| UUA--AAACG CUCGUAGUUG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 aauuaaaaug u-gguu-uua uacauu--uu ga-agacuuu auguaa-gua ---------- 1801 ---------- -----aa-g- uuucua-gaa -auguuaaau uaaaau-caa ag-------- 1861 aaggaaacaa u-ucaaguaa uugaguuguu auuacuuuga auaaaauaag guguu----- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ------uaaa gcaaaacauu auguuaauga auauucaagc augggacaau gcugagggga 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- --------u- gucaaua-ag acauuuc--- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---g-agaga a--ggauuaa aa--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGAA|CAAU ---------- 3001 --UGGGGUGA UU|--CAGAA AAUAACG-GG -AGAG(GU-G AAA---)AUC C-AUGA-U-C 3061 GCUAU-AAG- A-UGCAgcgA GAGC(-GAAA )--GC|A-GA UUUCAC-UC| AA-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------CUG ---UGUCCAU -UAA-U|CA- A-GAACGAAA 3301 GUUAGGGGA- UCGAAGACG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CGUAG|UCC UA--ACU-AU AAACGAUGUC AAC|CA|--- 3421 --aggau-ug gau-g-a--- ----(----- ---------) aauucagaug uacaaagaua 3481 gagaagc(au u)guuucaug aucugaguau aucaauauua cc-------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------u u-gu-uca-g aa-cuua--- ---------- ----aaGA(- 3661 GAAA-)UCu- ugaGUU-uau ggac|-u|u- caGGGGGGAG UA--UGGUC( --ACAA-)GG 3721 CUG-AAACUU -AAAG--GAA -UUG|AC-GG -AA-GGGCA- --CAC-CAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --A-GU|-G- 4021 AGCCUGC-|G CU-UAAUUUG (ACACAA-CA )CGGG--AAA -CU-ACCAAG AC[cga-aca 4081 guag-aagga au-----gaa cagauauaag g-ag------ uucuu----- uca-ugauuu 4141 auuggg---- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UA-GU- GGU-G-CAUG |--C|G--UC -UA|GU-GG- U|GGA(-GUG 4261 A-)UU-GUC- -AGG(UU-AA UU)CCGGUA- AC-GAACGAG ACUGA-AA|- ---------- 4321 ------(--- --)[CCU-AU UAAUUAGuuu u--cugccua uaagacagaa augu-ucgca 4381 aga--acagg u---gc-gua a--------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------g uaccacuucu uaaagggaca cauuucaa-- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ----uugucc uau------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------u uuaauugu]a gu|uaucuaa uuucgguua> gacc-ucu-u -u-u(aacgu 5041 gggaaaa~)~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~--~~ ~~~------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ---~~~~~~~ ~|~~~~|~~~ 5221 ~~~~~~~~~~ ~~~~~~~~~~ ~-~~~~~~~~ ~~~~~--~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5281 ~~~(-~~~~~ ~~~~)[~~~~ ~~~~~~~--- ---------- -----~~~~~ ~~~~~~~~~~ 5341 -~~~~~~~~~ ~~~~~~~~~( ~~~~~)~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5401 ~~~~~~~-~~ ~~~(~~~~~) ~~~~~~--~~ ~~~~~~~~~~ ~~~~~~]~~~ ~~~~~~~~~~ 5461 ~~~~~~~~~~ ~~~~~-~~-- ~~~~-~-~~~ ~~~~~~~~~( ~~~~~~~~)~ ~~~~~~~~~~ 5521 ~~~~~~-~~~ ~--~~~~~~~ ~~-~~~~~~~ (-~~~~~~~- )~~~~~~~-~ ~~~~~~~~~- 5581 ~~~~~~~~~~ ~~|~~~~-~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5641 ~~~-~~~~~- ~~~-~~~~~- ~~~~-~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ---------- 5701 -------(~~ ~~~~~~)~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~-~ 5761 ~~~~~~~~~~ -~~~~-|~~~ ~~~~~~~~~~ ~~-~~~~~-~ ~~~~~~~~~~ ~~~~~~~~~~ 5821 ~~~~~~~~~~ ~~-------- -----~~~-~ ~~~~~~(~~~ ~)~~~~~~~~ ~~~~~~~~~~ 5881 ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS (2)-Euglen 5903 bp RNA RNA 29-JAN-1996 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: DIVIDER BASE COUNT 0 a 0 c 0 g 0 t 5903 others ORIGIN 1 |......... .......... .......... .......... .-........ .......... 61 .......... .......... .-........ ..|....... |......... .......... 121 .......... .......... .......... .......... .....-.... .......... 181 .......... ..|....... .......... .......... .......... .......... 241 .......... .......... .......... .......... .......... .......... 301 .......... .......... .......... .......... .......... .......... 361 .......... .......... .......... .......... .......... .......... 421 .......... .......... .......... .......... .......... .......... 481 .......... .......... .......... .......... .......... .......... 541 .......... .......... .......... .......... .......... .......... 601 .......... .......... .......... .......... .......... .......... 661 .......... .......... .......... .......... .......... .......... 721 .......... .......... .......... .......... .......... .......... 781 .......... .......... .......... .......... .......... .......... 841 .......... .......... .......... .......... .......... .......... 901 .......... .......... .......... .......... .......... .......... 961 .......... .......... .......... .......... .......... .......... 1021 .......... .......... .......... .......... .......... .......... 1081 .......... .......... ...|...... .......... .......... .-........ 1141 .......... .......... .......... ...|...... .......... .......... 1201 .......... .......... .......... .......... ....-..... .....-.... 1261 .......... .........| .......... .......... .......... .......... 1321 .......... .|........ ....-..... .......... .......... .......... 1381 .....|.... .......... .......... .......... .......... .......... 1441 .......... .......... .......... .......... .......... .......... 1501 .......... .......... .......... .-----.... .......... .....>.... 1561 .......... .......... .......... .......... .......... ..-|...... 1621 ........|. .......... .........| .......... .......... .......... 1681 .......... .......... .......... .......... .......... .|........ 1741 .......... .-........ .......... .......... ......-... .......... 1801 ..-....... ..-....-.. .......... .......... .......... .......... 1861 .......... .-........ .......... .......... .......... .......... 1921 .......... .......... .......... .......... .......... .......... 1981 .......... .......... .......... .......... .......... .......... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... .......... .......... .......... .......... .......... 2161 .......... .......... .......... .......... .......... .......... 2221 .......... .......... .......... .......... .......... .......... 2281 .......... .......... .......... .......... .......... .......... 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... ....-..... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... .......... 2701 .......... .......... .......... .......... .......... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ..---..... 2881 .......... .......... .......... .......... .......... .......... 2941 .......... .......... .......... .......... .....|.... .......... 3001 .......... ...--..... .......... .......... .......... .......... 3061 .......... .......... .......... .....|.... .........| ..-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------... .......... ....-.|... .......... 3301 .......... .......... ....------ ---------- ---------- ---------- 3361 ---------. .......... .......... .......... .......... ...|...... 3421 .......... .......... .......... .......... .......... .......... 3481 .......... .......... .......... .......... .......... .......... 3541 .......... .......... .......... .......... .......... .......... 3601 .......... .......... .......... .......... .......... .......... 3661 .......... .......... .......|.. .......... .......... .......... 3721 .......... -......... ....|..... .......... .......... ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --....|... 4021 ........|. .......... .......-.. .......... .......... .......... 4081 .......... ..-----... .......... .-..--.... .....----- ...-...... 4141 .......... .]........ |......... .......... .......... .......... 4201 .......... ...|...... .......... ....|..... .........- .......... 4261 .-........ .......... .......... ..-....... .......... .......... 4321 .......... .......... .......... .......... .......... .......... 4381 .......... .......... .......... ...-...... .......... .......... 4441 --........ .......... .......... .......... .......... .......... 4501 .......... .......... .......... .......... .......... .......... 4561 .......... .......... .......... .......... .......... .......... 4621 .......... .......... .......... .......... .......... .......... 4681 .......... .......... .......... .......... .......... .......... 4741 .......... .......... .......... .......... .......... .......... 4801 .......... .......... .......... .......... .......... .......... 4861 .......... .......... .......... .......... .......... .......... 4921 .......... .......... .......... .......... .......... .......... 4981 .......... .......... .......... .......... .......... .......... 5041 .......... .......... .......... .......... ...------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ---....... .|....|... 5221 .......... .......... .......... .......... .......... .......... 5281 ....-..... .......... .......... .......... .......... .......... 5341 .......... .......... .......... .......... .......... .......... 5401 .......... .......... .......... .......... .......... .......... 5461 .......... .....-..-- ....-.-... .......... .......... .......... 5521 .......... .-........ .......... .-........ .......... .......... 5581 .......... ..|....... .......... .......... .......... .......... 5641 ...-.....- .......... .......... .......... .......... .......... 5701 ......-... .......... .......... .......... .......... ........-. 5761 .......... ......|... .......... .......... .......... .......... 5821 .......... .......... .......... .......... .......... .......... 5881 .......... ........|| ||| // LOCUS C.fascicul 5903 bp RNA RNA 11-JAN-1985 DEFINITION Crithidia fasciculata. ACCESSION No information KEYWORDS No information. SOURCE Crithidia fasciculata. ORGANISM Crithidia fasciculata. REFERENCE 1 AUTHORS No information JOURNAL Oct. 11 1985 STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: Y00055 Phylo:Eukaryotes,Protozoan BASE COUNT 547 a 503 c 594 g 562 t 3697 others ORIGIN 1 |~~~~~~~~~ ~~~~~GAUCU GGU(UGA)UU CU|GCCAGU- A-GUCA-UAU --GCUUGUUU 61 CAAG|-GACU UA-GCCAUGC A-UGCCU-CA GA|------- |-------(- ---)[----- 121 ---------- --------au cacugc--au ---------- -uu-g-cag- gaa]------ 181 -----|---U CU|G-CGCA- UGGCU-CAUU ACAu-caga- cgu-aauc-- ----ugccgc 241 aaaa<----- ---------- ---------- --aucuugcg guuu-ccgca a--------- 301 ->AAUUGG-A UAACUUGGC( -G-AAAC)GC CAAGC-UAA- UACAUG---- ----(----) 361 ---------- -------(-- --)--|---- -- -ucuuuugac -ga|acaacu gc|--CCU-A UCA--GCUGG U-GAUGGCC- 1141 GU(-GUAGUG G)ACU-GCCA U-|GGCGU-U GAC|GGGA-G --CGGG|GGA -U-(UAGG-) 1201 GUU-CGAUU- CCG|GAGAGG G-AGCC(U-G AGAAAU)AGC UACC-ACUUC (UACG-)GAG 1261 -GGCAGC-A- ---------| GGC-GC-GC- AAAUU-GCCC -AAUGUC-A( aaacaaaa)C 1321 GAUG-A-GGC -|A|GCGAAA AGAA-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AG aguUGUCAG- --UCC(---- ---aucu)GG A--UU-GUCA --UUUCAAUG 1501 ---GGGGAUA ----UUUAAA -ccca--ucc a-----aU-A U-CGA-GUAA C---->AAUU 1561 GGAG|GA-CA A-GU-C-UGG U-G(CCA-GC -ACCC|GC-G GU-AA)UUCC AG-|CUCCAA 1621 A-AGCGUA|U AUUAA--UGC UGUUG-CUG| UUA--AAGGG UUCGUAGUUG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 aacug-uggg c-ugug-uag guuugu--uc cu-ggucguc ccgucc-a-u ---------- 1801 ---------- -----gu-c- ggauu---ug -guggcccag gcccuu-gca gc-------- 1861 cc---gugaa c-auucaaag aaacaagaaa cacgggagug guuccuuucc ugauu----- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ------ua-- -cgcauguca ugcaugccag ggggcguccg ugauuuuuua cugugacuaa 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- --------a- gaagugu-ga cuaaagcagu 2161 cauccga--- ---------- ---------- --cuugaauu agaa------ ---------- 2221 ---agcaugg gauaacaaag gagcag--cc ucuaggcuac cguuucggcu uuuguugguu 2281 uuaaaggucu auuggagauu auggagcugu gcgaccagug cuuucacauc ---------- 2341 -------gua cuuucgugcg gugu------ ---------- ---------- ---------- 2401 ---------- ---------- ---------- ----guggug cCUUUG-GAG G--GGUU-UA 2461 GUGCguuc-G G--Cucgggc u--------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- -|-------- --------uc -gg-uCcg-- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- --uc|cgggc 2821 --g-uaacgc -cu-cuucaa cucacggcc- uc-----uag g--aaugaag GA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGU|AGUU ---------- 3001 --CGGGGGAG AA|--CGUAC UGGGGCG-UC -AGAG(GU-G AAA---)UUC U-UAGA-C-C 3061 GCACC-AAG- A-CGAACU-A CAGC(-GAAG )--GC|A--- UUCUUC-AA| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUA ---CCUUCCU -CAA-U|CA- A-GAACCAAA 3301 GUGUGGAGA- UCGAAGAUG( AUUA------ ---------- ---------- ---------- 3361 ---------- GAGAC)CA-U -UGUAG|UCC AC--ACU-GC AAACGAUGAC ACC|CA|--- 3421 -ugaauu-gg gga-u-c--- ----(----- ---------) uuuugggucg gcu-gcggca 3481 ggguuuaccc cugugucuug cgccgugc-- ---ccgcuuu uaccaa-cuu acguaucuuu 3541 uccau----- ---------- ---------- ----ccggcc uuuaccggcc accuacggga 3601 auauccucag cac------g u-uu-ucu-g -u-uuuuuc- ---------- ----acGC(- 3661 GAAA-)GCuu UGAGGu-uac aGUC|-U|C- AGGGGGGAGU AC--GU-UC( --GCAA-)GA 3721 GUG-AAACUU -AAAG--AAA -UUG|AC-GG -AA-UGGCA- -CCAC-AAGA ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --C-GU|-GG 4021 AGCGUGCG|G UU-UAAUUUG (ACUCAA-CA )CGGG--GAA CUUUACCAGA UC[cgg-aca 4081 ggau-gagga uu-----gac aga(uugagu g-u)------ ucuuu----- cuc-gauu-c 4141 ccugaa---- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU-G-CAUG |GCC|GC-UU UUG|GUCGG- U|GGA(-GUG 4261 A-)UUUGUU- -UGG(UU-GA UU)CCGUCA- AC-GGACGAG AUCCA-AG|- ---------- 4321 ------(--- --)[CUGCCC Ag--uaggau u--caga-au ugcccauagg aaag-caa-a 4381 -----cucau c---ggcggg u-----(uuu -)-------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ------accc aacggugggc cg-------c auucgguu-- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ----gaauu- CU-------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------U Cucugcgg]- --|------- ---------- GAuu-ccu-u ug-u(----- 5041 -auuugc-)a caag-g-ugA AAUU-UUGGG CAACAG--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UG A|UGCU|CC- 5221 U-CAA-UGUU CUGG-GCGAC A-CGCGCACU ACAAU--G-U CAGUG----- ---------- 5281 ---(------ ----)[agaa caagaaa--- ---------- ---------- ---------- 5341 ---------- ---aacgac( -uucu)gucg aa-------- ---------- ---------- 5401 -ccuacu-ug auc(aaaa-) gagug----g ggaaaccacg gaauca]--- ---------- 5461 -------cau aga-c-c--- cACU-U-GGG ACCGAGGAU( UGCAAUUA)U UGGUCGCGcA 5521 ACGAGG-AAU G--UCUCGUA GG-CGC-AGC (-UCAUCAA- )ACUGU-G-C -CGAUUACG- 5581 U-CCCUGCCA UU|UGUA-CA CACCGCCCGU CGUUGU-U-U CC-GAU--GA UG-GUGca-- 5641 aua-cagg-- uga-ucgga- cagg-cgga- ug-------- ---------- ---------- 5701 -------(uc u-----)--- ---------- ---------- ---------- ---------- 5761 caucug-ccc -gaaa-|guu -caccgauau uu-cuu-c-a auag-AGGAA GC-AAAA-G- 5821 UCGUAACAAG GU-------- -----A-G-C UGUAGG(UGA A)CCUGCAGC UGGAUCA--- 5881 --UUUU~~~~ ~~~~~~~~|| ||| // LOCUS Lepto.sp 5903 bp RNA RNA 11-JAN-191 DEFINITION Leptomonas sp.. ACCESSION No information KEYWORDS No information. SOURCE Leptomonas sp. ORGANISM Leptomonas sp. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: X53914 LOCUS TRLPSSRRG 2136 bp ds-DNA INV 22-MAY-1992 DEFINITION Leptomonas sp. small subunit ribosomal RNA gene ACCESSION X53914 KEYWORDS small subunit ribosomal RNA. SOURCE Leptomonas sp. DNA. ORGANISM Leptomonas sp. Eukaryota; Animalia; Protozoa; Sarcomastigophora; Mastigophora; Kinetoplastida; Trypanosomatina; Trypanosomatidae. REFERENCE 1 (bases 1 to 2136) AUTHORS Nelson,K. and Beverley,S.M. TITLE Evolution of nuclear small subunit ribosomal RNAs in kinetoplastid protozoans: New perspectives on the evolution of vertebrate parasitism JOURNAL Unpublished (1992) STANDARD full automatic COMMENT *source: stage=promastigote; *source: cell_line=L.Simpson line; From EMBL entry LSPSSRRG; dated 27-APR-1992. FEATURES Location/Qualifiers misc_feature 1..2136 /note="transcribed region" /gene="nuclear small subunit ribosomal RNA" BASE COUNT 532 a 489 c 570 g 545 t ORIGIN BASE COUNT 532 a 489 c 570 g 545 t 3767 others ORIGIN 1 |~~~~~~~~~ ~~~~~nnnnn nnn(nnn)nn nn|nnnnnU- A-GUCA-UAU --GCUUGUUU 61 CAAG|-GACU UA-GCCAUGC A-UGCCU-CA GA|------- |-------(- ---)[----- 121 ---------- --------au cacugc--au ---------- -uu-g-cag- gaa]------ 181 -----|---U CU|G-CGCA- UGGCU-CAUU ACAu-caga- cgu-aauc-- ----ugccgc 241 aaua<----- ---------- ---------- --aucuugcg gucu-ccgca a--------- 301 ->UAUUGG-A UAACUUGGC( -G-AAAC)GC CAAGC-UAA- UACAUG---- ----(----) 361 ---------- -------(-- --)--|---- -- -ucuuuugac -ga|acaacu gc|--CCU-A UCA--GCUUG C-GAUGGCC- 1141 GU(-GUAGUG G)ACU-GCCA U-|GGCGU-U GAC|GGGA-G --CGGG|GGA -U-(UAGG-) 1201 GUU-CGAUU- CCG|GAGAGG G-AGCC(U-G AGAAAU)AGC UACC-ACUUC (UACG-)GAG 1261 -GGCAGC-A- ---------| GGC-GC-GC- AAAUU-GCCC -AAUGUC-A( aaacaaaa)C 1321 GAUG-A-GGC -|A|GCGAAA AGAA-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AG AGUUGUCAG- --UCC(---- ---auuu)GG A--UU-GUCA --UUUCAAUG 1501 ---GGGGAUA ----UUUAAA -CCCA--UCC A-----AU-A U-CGA-GUAA C---->AAUU 1561 GGAG|GA-CA A-GU-C-UGG U-G(CCA-GC -ACCC|GC-G GU-AA)UUCC AG-|CUCCAA 1621 A-AGCGUA|U AUUAA--UGC UGUUG-CUG| UUA--AAGGG UUCGUAGUUG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 aauug-uggg c-ugug-uag guuugu--uc cu-gguaguc ccgucc-aug ---------- 1801 ---------- -----uc-g- gauuug-gug -gcccaggcc cuugca-gcc c--------- 1861 -----gugaa c-auucaaag aaacaagaaa cacgggagug guuccuuucc ugauu----- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ------ua-- -cgcaugcca ugcaugccag ggggcguccg ugauuuuuua cugugacuaa 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- --------a- gaagugu-ga cuaaagcagu 2161 cauucga--- ---------- ---------- --cuugaauu agaa------ ---------- 2221 ---agcaugg gauaacaaag gagcag--cc ucuaggcuac cguuucggcu uuuguugguu 2281 uuaaaggucu auuggagauu auggagcugu gcgacaagug cuuucccauc guacc----- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- -----uagug cggugugug- -------g-- ---------- -cgccuuug- 2521 --ggggguuu agug-c-guu cgguucgggc uccggu---- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ------ccgu 2821 -cu-gggcgu -aa-cgccuu uucaacuca- cggccucuag g--aaugaag ga--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGU|AGCU ---------- 3001 --CGGGGGAG AA|--CGUAC UGGGGCG-UC -AGAG(GU-G AAA---)UUC U-UAGA-C-C 3061 GCACC-AAG- A-CGAACU-A CAGC(-GAAG )--GC|A--- UUCUUC-AA| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUA ---CCUUCCU -CAA-U|CA- A-GAACCAAA 3301 GUGUGGAGA- UCGAAGAUG( AUUA------ ---------- ---------- ---------- 3361 ---------- GAGAC)CA-U -UGUAG|UCC AC--ACU-GC AAACGAUGAC ACC|CA|--- 3421 -ugaauu-gg gga-u-c--- ----(----- ---------) uuuugggucg g-uugcggca 3481 ggguuuaccc ugugucuugc accgcgc--- ---ccgcuuu uaccaacuua cguaucuuuu 3541 ccauuc---- ---------- ---------- ------ggcc uuuaccggcc acccaaggga 3601 auauccucag cac------g u-uu-ucu-u -u-uucuuc- ---------- ----acGC(- 3661 GAAA-)GCuu uGAGgu-uac aGUC|-U|C- AGGGGGGAGU AC--GU-UC( --GCAA-)GA 3721 GUG-AAACUU -AAAG--AAA -UUG|AC-GG -AA-UGGCA- -CCAC-AAGA ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --C-GU|-GG 4021 AGCGUGCG|G UU-UAAUUUG (ACUCAA-CA )CGGG--GAA CUUUACCAGA UC[cgg-aca 4081 ggau-gagga uu-----gac aga(uugagu g-u)------ ucuuu----- cuc-gauu-c 4141 ccugaa---- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU-G-CAUG |GCC|GC-UU UUG|GUCGG- U|GGA(-GUG 4261 A-)UUUGUU- -UGG(UU-GA UU)CCGUCA- AC-GGACGAG AUCCA-AG|- ---------- 4321 ------(--- --)[CUGCCC AG--uagaau u--caga-au uguccauaga auag-caa-a 4381 -----cucau c---ggcggg u-----(uuu -)-------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ------accc aacggugggc cg-------c auucgguc-- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ----gaauu- cu-------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------U CUCUGCGG]- --|------- ---------- GAuu-ccu-u ug-u(----- 5041 -auuugc-)a caag-g-ugA AAUU-UUGGG CAACAG--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UG A|UGCU|CC- 5221 U-CAA-UGUU CUGG-GCGAC A-CGCGCACU ACAAU--G-U CAGUG----- ---------- 5281 ---(------ ----)[agaa caagaaa--- ---------- ---------- ---------- 5341 ---------- ---aacgac( -uuuu)gucg a--------- ---------- ---------- 5401 accuacu-ug auc(aaaa-) gagug----g ggaaaccccg gaauca]--- ---------- 5461 -------cau aga-c-c--- cACU-U-GGG ACCGAGGAU( UGCAAUUA)U UGGUCGCGCA 5521 ACGAGG-AAU G--UCUCGUA GG-CGC-AGC (-UCAUCAA- )ACUGU-G-C -CGAUUACG- 5581 U-CCCUGCCA UU|UGUA-CA CACCGCCCGU CGUUGU-U-U CC-GAU--GA UG-GUGca-- 5641 aua-cagg-- uga-ucgga- cagg-cag-- aug------- ---------- ---------- 5701 -------(uc u-----)--- ---------- ---------- ---------- ---------- 5761 caucug-ccc -gaaa-|guu -caccgauau uu-cuu-c-a auag-AGGAA GC-AAnn-n- 5821 nnnnnnnnnn nn-------- -----n-n-n nnnnnn(nnn n)nnnnnnnn nnnnnnn--- 5881 --nnn~~~~~ ~~~~~~~~|| ||| // LOCUS E.monterog 5903 bp RNA RNA 11-JAN-191 DEFINITION Endotrypanum monterogei subsp. was Endotrypanum monterogeii. ACCESSION No information KEYWORDS No information. SOURCE Endotrypanum monterogei subsp. was Endotrypanum monterogeii. ORGANISM Endotrypanum monterogei. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: X53911 ID EMSSRRNA standard; DNA; INV; 2135 BP. XX AC X53911; XX DT 24-APR-1992 (Rel. 31, Created) DT 24-APR-1992 (Rel. 31, Last updated, Version 1) XX DE E.monterogeii small subunit rRNA gene XX KW small subunit ribosomal RNA. XX OS Endotrypanum monterogeii OC Eukaryota; Animalia; Protozoa; Sarcomastigophora; Mastigophora; OC Kinetoplastida; Trypanosomatina; Trypanosomatidae. XX RN [1] RP 1-2135 RA Nelson K.; RT ; RL Submitted (11-JUL-1990) on tape to the EMBL Data Library by: RL Nelson K., Penn. State University, 208 Mueller Labs, Dept. of RL Biology, University Park, PA 16802, USA. XX RN [2] RA Nelson K., Beverley S.M.; RT "Evolution of nuclear small subunit ribosomal RNAs in RT kinetoplastid protozoans: New perspectives on the evolution of RT vertebrate parasitism"; RL Unpublished. XX CC *source: strain=LV88; CC *source: stage=promastigote; CC *source: cell_line=LV 88; XX FH Key Location/Qualifiers FH FT misc_feature 1..2135 FT /gene="nuclear small subunit ribosomal RNA" FT /note="transcribed region" XX SQ Sequence 2135 BP; 530 A; 494 C; 572 G; 539 T; 0 other; BASE COUNT 530 a 494 c 572 g 539 t 3768 others ORIGIN 1 |~~~~~~~~~ ~~~~~nnnnn nnn(nnn)nn nn|nnnnnU- A-GUCA-UAU --GCUUGUUU 61 CAAG|-GACU UA-GCCAUGC A-UGCCU-CA GA|------- |-------(- ---)[----- 121 ---------- --------au cacugc--ac ---------- -uu-g-cag- gaa]------ 181 -----|---U CU|G-CGCA- UGGCU-CAUU ACAu-caga- cgu-aauc-- ----ugccgc 241 aaaa<----- ---------- ---------- --aucuugcg guuu-ccgca a--------- 301 ->AAUUGG-A UAACUUGGC( -G-AAAC)GC CAAGC-UAA- UACAUG---- ----(----) 361 ---------- -------(-- --)--|---- -- -ucuuuugac -ga|acaacu gc|--CCU-A UCA--GCUUG U-GAUGGCC- 1141 GU(-GUAGUG G)ACU-GCCA U-|GGCGU-U GAC|GGGA-G --CGGG|GGA -U-(UAGG-) 1201 GUU-CGAUU- CCG|GAGAGG G-AGCC(U-G AGAAAU)AGC UACC-ACUUC (UACG-)GAG 1261 -GGCAGC-A- ---------| GGC-GC-GC- AAAUU-GCCC -AAUGUC-A( aaacaaac)- 1321 GAUG-A-GGC -|A|GCGAAA AGAA-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AG AGUAGUCAG- --UCC(---- ---auuu)GG A--UU-GUCU --UUUCAAUG 1501 ---GGGGAUA ----UUUAAA -CCCA--UCC A-----AU-A U-CGA-GUAA C---->AAUU 1561 GGAG|GA-CA A-GU-C-UGG U-G(CCA-GC -ACCC|GC-G GU-AA)UUCC AG-|CUCCAA 1621 A-AGCGUA|U AUUAA--UGC UGUUG-CUG| UUA--AAGGG UUCGUAGUUG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 aacug-uggg c-ugug-cag guuugu--cc cu-ggucguc ccgucc-aug ---------- 1801 ---------- -----uc-g- gauuug-gug -acccaggcc cuugca-gcc c--------- 1861 -----gugaa c-auucaaag aaacaagaaa cacgggagug guuccuuucc ugauu----- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ------ua-- -cgcauguca ugcaugccag ggggcguccg ugauuuuuua cugugacuaa 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- --------a- gaagugu-ga cuaaagcagu 2161 cauuuga--- ---------- ---------- --cuugaauu agaa------ ---------- 2221 ---agcaugg gauaacaaag gagcag--cc ucuaggcuac cguuucggcu uuuguugguu 2281 uuaaaggucu auuggagauu auggagcugu gcgacaagcg cuuucccauc gcaac----- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---uccgguu cggugugug- -------g-- ---------- -cgccuuug- 2521 --ggugguuu agug-c-guu cggugggggc uccggc---- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ------uccc 2821 -cc-ggucgu -ua-cgccau cccaacuca- cggccucuag g--aaugaag ga--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGU|AGUU ---------- 3001 --CGGGGGGG AA|--CGUAC UGGGGCG-UC -AGAG(GU-G AAA---)UUC U-UAGA-C-C 3061 GCACC-AAG- A-CGAACU-A CAGC(-GAAG )--GC|A--- UUCUUC-AA| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUA ---CCUUCCU -CAA-U|CA- A-GAACCAAA 3301 GUGUGGAGA- UCGAAGAUG( AUUA------ ---------- ---------- ---------- 3361 ---------- GAGAC)CA-U -UGUAG|UCC AU--ACU-GC AAACGAUGAC ACC|CA|--- 3421 -ugaauu-gg gga-u-c--- ----(----- ---------) uuaugggucg gcuugcggca 3481 ggguuuaccc ugugcc-agc accgcgc--- ---ccgcuuu uaccaacuua cguaucuuuu 3541 cuaucu---- ---------- ---------- ------ggcc uuuaccggcc acccacggga 3601 auauccucag cac------g u-uu-ucu-g -u-uuuuuc- ---------- ----acGC(- 3661 GAAA-)GCuu uGAGgu-uac aGUC|-U|C- AGGGGGGAGU AC--GU-UC( --GCAA-)GA 3721 GUG-AAACUU -AAAG--AAA -UUG|AC-GG -AA-UGGCA- -CCAC-AAGA ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --C-GU|-GG 4021 AGCGUGCG|G UU-UAAUUUG (ACUCAA-CA )CGGG--GAA CUUUACCAGA UC[cgg-aca 4081 ggau-gagga uu-----gac aga(uugagu g-u)------ ucuuu----- cuc-gauu-c 4141 ccugaa---- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU-G-CAUG |GCC|GC-UU UUG|GUCGG- U|GGA(-GUG 4261 A-)UUUGUU- -UGG(UU-GA UU)CCGUCA- AC-GGACGAG AUCCA-AG|- ---------- 4321 ------(--- --)[CUGCCC AG--uagaau u--caga-au uguacauaga auag-caa-a 4381 -----cucau c---ggcggg u-----(uuu -)-------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ------accc aacggugggc cg-------c auucgguc-- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ----gaauu- cu-------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------U CUCUGCGG]- --|------- ---------- GAuu-ccu-u ug-u(----- 5041 -aauugc-)a caag-g-ugA AAUU-UUGGG CAACAG--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UG A|UGCU|CC- 5221 U-CAA-UGUU CUGG-GCGAC A-CGCGCACU ACAAU--G-U CAGUG----- ---------- 5281 ---(------ ----)[agaa caagaaa--- ---------- ---------- ---------- 5341 ---------- ---aacgac( -uuuu)gucg a--------- ---------- ---------- 5401 accuacu-ug auc(aaaa-) gagug----g ggaaaccccg gaauca]--- ---------- 5461 -------cau aga-c-c--- cACU-U-GGG ACCGAGGAU( UGCAAUUA)U UGGUCGCGCA 5521 ACGAGG-AAU G--UCUCGUA GG-CGC-AGC (-UCAUCAA- )ACUGU-G-C -CGAUUACG- 5581 U-CCCUGCCA UU|UGUA-CA CACCGCCCGU CGUUGU-U-U CC-GAU--GA UG-GCGca-- 5641 aua-cagg-- uga-ucgga- cagg-cgg-- -ug------- ---------- ---------- 5701 -------(uu u-----)--- ---------- ---------- ---------- ---------- 5761 cauccg-ccc -gaaa-|guu -caccgauau uu-cuu-c-a auag-AGGAA GC-AAnn-n- 5821 nnnnnnnnnn nn-------- -----n-n-n nnnnnn(nnn n)nnnnnnnn nnnnnnn--- 5881 --nnn~~~~~ ~~~~~~~~|| ||| // LOCUS L.donovani 5903 bp RNA RNA 11-JAN-191 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: M80295 LOCUS LEIRRSSD 882 bp ss-rRNA RNA 31-MAR-1992 DEFINITION Leishmania donovani small subunit ribosomal RNA. ACCESSION M80295 KEYWORDS ribosomal RNA small subunit. SOURCE Leishmania donovani (strain NLB065) rRNA. ORGANISM Leishmania donovani Eukaryota; Animalia; Protozoa; Sarcomastigophora; Mastigophora; Kinetoplastida; Trypanosomatina; Trypanosomatidae. REFERENCE 1 (bases 1 to 882) AUTHORS Ebeling,S.B., Kroon,C., Schoone,G.J. and Van Eys,G. TITLE Sequence analysis of small subunit ribosomal RNA genes and its use for detection and identification of Leishmania parasites JOURNAL Mol. Biochem. Parasitol. 51, 133-142 (1992) STANDARD full staff_entry FEATURES Location/Qualifiers rRNA 1..882 /note="This sequence is identical to those of Leishmania infantum and Leishmania chagasi" /product="small subunit ribosomal RNA" /gene="small subunit rRNA" BASE COUNT 207 a 203 c 239 g 233 t ORIGIN BASE COUNT 207 a 203 c 239 g 233 t 5021 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~(~~~)~~ ~~|~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~|~~~~~~~ |~~~~~~~(~ ~~~)[~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~]~~~~~~ 181 ~~~~~|~~~~ ~~|~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~<~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 ~>~~~~~~~~ ~~~~~~~~~( ~~~~~~~)~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~) 361 ~~~~~~~~~~ ~~~~~~~(~~ ~~)~~|~~~~ ~~<~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~)~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~)~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~|~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~)~~ ~~~~~~~~~~ 1081 ~~~~~~~~~> ~~~~~~~~~~ ~~~|~~~~~~ ~~|~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~(~~~~~~~ ~)~~~~~~~~ ~~|~~~~~~~ ~~~|~~~~~~ ~~~~~~|~~~ ~~~(~~~~~) 1201 ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~(~~~ ~~~~~~)~~~ ~~~~~~~~~~ (~~~~~)~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~( ~~~~~~~~)~ 1321 ~~~~~~~~~~ ~|~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~)~~~ ~~~~~~~~~~ 1381 |~~~~|~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~)~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~(~~~~ ~~~~~~~)~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~>~~~~ 1561 ~~~~|~~~~~ ~~~~~~~~~~ ~~~(~~~~~~ ~~~CC|GC-G GU-AA)UUCC AG-|CUCCAA 1621 A-AGCGUA|U AUUAA--UGC UGUUG-CUG| UUA--AAGGG UUCGUAGUUG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 aacug-uggg c-ugug-cag guuugu--uc cu-ggucguc ccgucc-aug ---------- 1801 ---------- -----uc-g- gauuug-gug -acccaggcc cuugca-gcc c--------- 1861 -----gugaa c-auucaaag aaacaagaaa cacgggagug guuccuuucc ugauu----- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ------ua-- -cgcauguca ugcaugccag ggggcguccg ugauuuuuua cugugacuaa 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- --------a- gaagcgu-ga cuaaagcagu 2161 cauuuga--- ---------- ---------- --cuugaauu agaa------ ---------- 2221 ---agcaugg gauaacaaag gagcag--cc ucuaggcuac cguuucggcu uuuguugguu 2281 uuaaaggucu auuggagauu auggagcugu gcgacaagug cuuucccauc gcaac----- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---cucgguu cggugugug- -------g-- ---------- -cgccuuug- 2521 --agggguuu agug-c-guc cgguacgagc uccggu---- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ------ucgu 2821 -cc-ggccgu -aa-cgccuu uucaacuca- cggccucuag g--aaugaag ga--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGU|AGUU ---------- 3001 --CGGGGGAG AA|--CGUAC UGGGGCG-UC -AGAG(GU-G AAA---)UUC U-UAGA-C-C 3061 GCACC-AAG- A-CGAACU-A CAGC(-GAAG )--GC|A--- UUCUUC-AA| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUA ---CCUUCCU -CAA-U|CA- A-GAACCAAA 3301 GUGUGGAGA- UCGAAGAUG( AUUA------ ---------- ---------- ---------- 3361 ---------- GAGAC)CA-U -UGUAG|UCC AC--ACU-GC AAACGAUGAC ACC|CA|--- 3421 -ugaauu-gg gga-u-c--- ----(----- ---------) uuaugggccg gccugcggca 3481 ggguuuaccc uguguccagc accgcgc--- ---ccgcuuu uaccaacuua cguaucuuuu 3541 cuauuc---- ---------- ---------- ------ggcc uuuaccggcc acccacggga 3601 auauccucag cac------g u-uu-ucu-g -u-uuuuuc- ---------- ----acGC(- 3661 GAAA-)GCuu uGAGgu-uac aGUC|-U|C- AGGGGGGAGU AC--GU-UC( --GCAA-)GA 3721 GUG-AAACUU -AAAG--AAA -UUG|AC-G~ -~~-~~~~~- -~~~~-~~~~ ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --~-~~|-~~ 4021 ~~~~~~~~|~ ~~-~~~~~~~ ~~~~~~~-~~ ~~~~~--~~~ ~~~~~~~~~~ ~~[~~~-~~~ 4081 ~~~~~~~~~~ ~~-----~~~ ~~~(~~~~~~ ~-~)------ ~~~~~----- ~~~-~~~~~~ 4141 ~~~~~~~~~~ ~]~~~~~~~~ |~~~~~~~~~ ~~~~~(~~~~ )~~~~~~~~~ ~~~(~~~~)~ 4201 ~~~|~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ |~~~|~~~~~ ~~~|~~~~~- ~|~~~(~~~~ 4261 ~-)~~~~~~~ ~~~~(~~~~~ ~~)~~~~~~~ ~~-~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ 4321 ~~~~~~(~~~ ~~)[~~~~~~ ~~~~~~~~~~ ~--~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4381 ~~~--~~~~~ ~---~~~~~~ ~~~~~~(~~~ ~)~-~~~~~~ ~~~~~~~~~~ -~~~~~~~~~ 4441 --~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------~ ~~~~~~~~]~ ~~|~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~~~~(~~~~~ 5041 ~~~~~~~~)~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~--~~ ~~~------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ---~~~~~~~ ~|~~~~|~~~ 5221 ~~~~~~~~~~ ~~~~~~~~~~ ~-~~~~~~~~ ~~~~~--~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5281 ~~~(-~~~~~ ~~~~)[~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5341 ~~~~~~~~~~ ~~~~~~~~~( ~~~~~)~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5401 ~~~~~~~-~~ ~~~(~~~~~) ~~~~~~--~~ ~~~~~~~~~~ ~~~~~~]~~~ ~~~~~~~~~~ 5461 ~~~~~~~~~~ ~~~~~-~~-- ~~~~-~-~~~ ~~~~~~~~~( ~~~~~~~~)~ ~~~~~~~~~~ 5521 ~~~~~~-~~~ ~--~~~~~~~ ~~-~~~~~~~ (-~~~~~~~- )~~~~~~~-~ ~~~~~~~~~- 5581 ~~~~~~~~~~ ~~|~~~~-~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5641 ~~~-~~~~~- ~~~-~~~~~- ~~~~-~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ---------- 5701 -------(~~ ~~~~~~)~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~-~ 5761 ~~~~~~~~~~ -~~~~-|~~~ ~~~~~~~~~~ ~~-~~~~~-~ ~~~~~~~~~~ ~~~~~~~~~~ 5821 ~~~~~~~~~~ ~~-------- -----~~~-~ ~~~~~~(~~~ ~)~~~~~~~~ ~~~~~~~~~~ 5881 ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS E.gracilis 5903 bp RNA RNA 08-APR-1987 DEFINITION Euglena gracilis. ACCESSION No information KEYWORDS No information. SOURCE Euglena gracilis. ORGANISM Euglena gracilis. REFERENCE 1 AUTHORS Sogin,M.L., Elwood,H.J. and Gunderson,J.H. TITLE Evolutionary diversity of eukaryotic small-subunit rRNA genes JOURNAL Proc. Natl. Acad. Sci. U.S.A. 83, 1383-1387 (1986) STANDARD No information COMMENTS Organism information Culture collection: ? Sequence information (bases 1 to 5903) Corresponding GenBank entry: M12677 Phylo:Eukaryotes,Protozoan BASE COUNT 491 a 627 c 688 g 499 t 3598 others ORIGIN 1 |~~~~~~~~~ ~~~~~AAUCU GGU(UGA)UC CU|GCCAGC- A-GUCA-UAU --GCUUUGUU 61 CAAG|-GGCU AA-GCCAUGC A-CGUCU-CA Gc|------- |-------(- ---)[----- 121 ---------- --------gc aaacgg--ag ---------- -ug-a-cagu gga]------ 181 -----|---U CU|G-UGAA- UGGCU-CCUU ACAu-cagc- agu-cauc-- ----uacgug 241 auag<----- ---------- -----agugu gcuc-ggucc accugcaagg acc------- 301 c>CAUUGG-A CAUCCACCA( -A-AACC)UU GUGGC-UAA- UACACG---- ----(----) 361 ---------- -------(-- --)--|---- -- -ugaucgcaa -ga|gcuucu ga|--CCU-A UCA--GCUU- --GACUGUG- 1141 GU(-GUAUCG G)ACC-ACAG U-|GGCCU-U GAC|GGGU-A A-CGGA|GAA -U-(CAGG-) 1201 GUU-CGAUU- CCG|GAGAGG G-AGCC(U-G AGAGAC)GGC UACC-ACUAC (CAAG-)GUG 1261 -GGCAGC-A- ---------| GGC-AC-GC- AAAUU-GCCC -CAUGCA-A( a-gacagu)C 1321 UGUG-A-GGC -|A|GCGACG AACA-GU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AG CAACCCCGU- -CGGC(---- cuuacgu)GC CG-AU-GGGG C-UUGGAAU- 1501 ------GGAC ----GCUAUC -CAAA--gac a-----gc-c G-UGA-GUAU C---->AACC 1561 GGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCU|GC-G GU-AA)UUCC AG-|CUCCGA 1621 G-GGCGUA|U ACUAA--CAU UGCUG-CUG| UUA--AAACA CUUGUAGUCU |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 gccua-cggg c-ugca-ggu cugcug--g- gu-ggccggu uuguug-uuu ---------- 1801 ---------- ------c-u- cuggcc-a-- -gggaaggac cucggu-ucg ac-------- 1861 ccuguguugg g-cugcaacg gcuggacuca acccccagug guacgucccu gcgcc----- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ------cacc ucucagucga uggugagauc ugcuccu-gc caaaagucUG CUUCAcuGCA 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- --------G- GCcaaag-cg guuuaugccu 2161 cccgcac--- ---------- ---------- ---uggcaac ggac------ ---------- 2221 ----accaac aggggaccca gccucgagcu ggguagucua ccucuggucc accaccggag 2281 cccaccgucu ucgacacccu gGAAAACuca -gugugcuca aagcaucccc gcgacggcug 2341 aauguccauc cauggaaugu caag------ ---------- ---------- ---------- 2401 ---------- ---------- ---------- ----gcaucg accaagugug gc-auug-ga 2461 ---guugugc ug-ccuuggg gcccacucug -------g-- ---------- -a-------- 2521 -caaccug-g uggu-g--ug uuccug-cag gaucaac|ag -gaucgu-ug -cccu----- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------g ccuggccuuc gggucucguc a--------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- --gg|cuucg 2821 --u-ccccug -uc-ccugca g--cuugca- cccaucgauc g--uaagugA UG--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGAC|UGUU ---------- 3001 --CGGGGUGA AA|--GAUAC GGGAGCG-CC -AGAG(GU-G AAA---)UUC U-UAGA-U-C 3061 GCUGC-CAG- A-UCCACU-G CAGC(-GAAG )--GC|G--- UUCUGC-AA| GU-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------GCA ---CGUCCGU -CGA-U|CA- A-GAAUGAGA 3301 GUUCGGGGA- GCAAAGAUG( AUCA------ ---------- ---------- ---------- 3361 ---------- GACAC)CG-U -CGUAG|UCC GGccACU-GU AAACGAUGCC GGC|CA|--- 3421 --ggccuugg cag-a-g--- ----(-caag aauccuaga) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------c u-cu-guc-a gg-gcc---a cuccucccac a---acGA(- 3661 GAAA-)UCca -CAGCC-ugu gGGU|-U|C- AGGGGGGAGU AC--UG-UC( --GCAA-)GG 3721 CUG-AAACUU -AAAG--GAA -UUG|AC-GG -AA-UGGCA- -CCAC-AAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --C-GU|-GG 4021 AGUAUGCG|G CU-UAAUUUG (ACUCAA-CG )CGGG--GAA UGUUACCAGG UC[agg-acg 4081 caac-uggga uu-----gac aga(uugaga g-c)------ ucuuu----- cuu-gauc-u 4141 ugugga---- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|CG-GU- GGU-G-CAUG |GCC|GC-UC CUG|AUUGG- U|GGA(-GUG 4261 A-)UUUGUC- -UGG(UU-GA UU)CCGAUA- AC-GAGUGAG ACAUC-UG|- ---------- 4321 ------(--- --)[CCUCCC Ac--uagccu g--aggcucg cauuugguag gguu-cggcu 4381 gcu--cggug g---cag--c ccccug(gca a)-------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- -------cag 4621 ggggagaugu accggugcau gcucccgaga gccuccag-- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ----uucag- CU-------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------U CUCUGAGG]- --|------- ---------- UGCU-Gug-u -c-c(----- 5041 gccacaaa)g ggca-u-gcA UGcU-AGAGC CAACAG--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UG A|UGCU|CC- 5221 C-AGA-UGUC CUGG-GCCGC A-CGCGCACU ACAUU--G-U CACAG----- ---------- 5281 ---(------ ----)[ugaa ggugucg--- ---------- ---------- ---------- 5341 ---------- -acaugccc( -acuc)cggu g--------- ---------- ---------- 5401 -ggcccu-gg ccu(gaag-) aggcu----g ggaaauccug -caagc]--- ---------- 5461 -------cug uga-c-g--- uACU-G-GGG AUAGAUGGU( UGCAACUG)U CUGCCUUG-A 5521 ACGUGG-AAU G--CCUAGUA UG-CCU-GGG (-UCAUCAG- )CCCAG-A-C -CGAUUGUG- 5581 U-CCCUGCCA UU|UGUA-CA CACCGCCCGU CGUUGC-U-A CC-GAU--GG UG-GCUgg-- 5641 aua-gagu-- cau-cagga- gguu-gugg- aggc-ggccu cu-------- ---------- 5701 ------c(gg ggca--)-g- ---------- ---------- ---------- --ua-gag-- 5761 cauccc-agc -cgaa-|auu -ggacgaugu cc-agc-c-a cuag-AGGAA GC-AAAA-G- 5821 UCGUAACAAG GU-------- -----U-G-C UGUAGG(UGA A)CCUGCAGC AGGAUCA--- 5881 --UUG~~~~~ ~~~~~~~~|| ||| // LOCUS B.caudatus 5903 bp RNA RNA 11-JAN-191 DEFINITION Bodo caudatus. ACCESSION No information KEYWORDS No information. SOURCE Bodo caudatus. ORGANISM Bodo caudatus. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: X53910 LOCUS BODSSRRNA 2012 bp ds-DNA INV 02-MAY-1992 DEFINITION B.caudatus small subunit rRNA gene ACCESSION X53910 KEYWORDS small subunit ribosomal RNA. SOURCE Bodo caudatus DNA. ORGANISM Bodo caudatus Eukaryota; Animalia; Protozoa; Sarcomastigophora; Mastigophora; Kinetoplastida; Bodonidae; Bodoninae. REFERENCE 1 (bases 1 to 2012) AUTHORS Nelson,K. and Beverley,S.M. TITLE Evolution of nuclear small subunit ribosomal RNAs in kinetoplastid protozoans: New perspectives on the evolution of vertebrate parasitism JOURNAL Unpublished (1992) STANDARD full automatic COMMENT *source: strain=J. Hajduk; From EMBL entry BCSSRRNA; dated 24-APR-1992. FEATURES Location/Qualifiers misc_feature 1..2012 /note="transcribed region" /gene="nuclear small subunit ribosomal RNA" BASE COUNT 514 a 463 c 534 g 501 t ORIGIN BASE COUNT 514 a 463 c 534 g 501 t 3891 others ORIGIN 1 |~~~~~~~~~ ~~~~~nnnnn nnn(nnn)nn nn|nnnnnU- A-GUCA-UAU --GCUUGUUU 61 CAAG|-GACU AA-GCCAUGC A-UGCCU-CA GA|------- |-------(- ---)[----- 121 ---------- --------au aacugc--au ---------- -u--g-cag- gaa]------ 181 -----|---U CU|G-CGCA- UGGCU-CAUU ACAU-caga- cgu-aauc-- ----ugccgc 241 aaua<----- ---------- ---------- --gcuuugcg gucu-ccgca ---------- 301 u>UAUUGG-A UAACUUGGC( -G-AAAC)GU CAAGC-UAA- UACAUG---- ----(----) 361 ---------- -------(-- --)--|---- -- --cuuuugac -ga|acaacu gc|--CCU-A UCA--GCUug u-GUUGGCA- 1141 GU(-GUAGUG G)ACU-GCCA A-|GGCUU-U GAC|GGGA-G --CGGG|GGA -U-(UAGG-) 1201 GUU-CGAUU- CCG|GAGAGG G-AGCC(U-G AGAAAU)AGC UACC-ACUUC (UACG-)GAG 1261 -GGCAGC-A- ---------| GGC-GC-GC- AAAUU-GCCC -AAUGUC-A( aaaaaa-a)C 1321 GAUG-A-GGC -|A|GCGAAA AGAA-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AG GGccugcag- -acgg(---- ---uuua)cc gu-au-gugg g-auacAAUG 1501 ---GGGGAUA ----UUUAAU -gcca--ucc a-----aU-A U-CGA-GUAU C---->AAUU 1561 GGAG|GA-CA A-GU-C-UGG U-G(CCA-GC -ACCC|GC-G GU-AA)UUCC AG-|CUCCAA 1621 A-AGCGUA|U AUUAA--CGC UGCUG-CUG| UUA--AAGGG UUCGUAGUUG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 aauug-uggc u-ugcg-aau ccgcug--cc cc-guccccu uuuuug-ggg ---------- 1801 ---------- -----gg-c- gccagc-gcu -cgcuugccg ugaaca-uuc ga-------- 1861 aacacaaaac a-cgggaaug guuccuuucc acccucgcau gccaugcaug cggaa----- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ------aggc gcccgugauu uuuacuguga cuaaaaaagc gcgaccaaag cagucguucg 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- --------a- ccuguau-uu ucaagcaugg 2161 gauaaca--- ---------- ---------- --aagcuaac cuuc------ ---------- 2221 ---ggauauu uccgguuucg gcuuuuguug guuuuaacag uccguacgag auuauaagug 2281 agugcgacac gcccuucacg ggggcuuccg ggcccgcaag gugcccgguu cauuucgcuu 2341 cagaaugaaa ga-------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---------- ----->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGU|UGU- ---------- 3001 --CGGGGGAG AA|--CGUAC UGAGGCG-UG -AGAG(GU-G AAA---)UUC U-UAGA-C-C 3061 GCCUU-AAG- A-CGAACU-A CAGC(-GAAG )--GC|A--- UUCUCC-AA| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUA ---CCUUCCU -CAA-U|CA- A-GAACCAAA 3301 GUGUGGAGA- UCGAAGAUG( AUUA------ ---------- ---------- ---------- 3361 ---------- GAGAC)CA-U -UGUAG|UCC AC--ACC-AC AAACGGUGAC ACC|CA|--- 3421 -ugaauu-gg gga-u-u--- ----(----- ---------) -uuuugguug uucgcggu-u 3481 gggcuugccc agcuuu--gc gauc------ ---gccaaua uuucaaauuu acgugcacgu 3541 uca------- ---------- ---------- ------acac cccucacggg gauuacggga 3601 acauccucag cac------g u-cu-uuu-a -u-uccuuc- ---------- ----acGC(- 3661 GAAA-)GCuu UGAGgu-uau aGUC|-U|C- AGGGGGGAGU AC--GU-UC( --GCAA-)GA 3721 GUG-AAACUU -AAAG--AAA -UUG|AC-GG -AA-UGGCA- -CCAC-AAGA ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --C-GU|-GG 4021 AGCGUGCG|G UU-UAAUUUG (ACUCAA-CA )CGGG--GAA CUUUACCAGA UC[cgg-aga 4081 gggu-gagga uu-----gac aga(uugagu g-u)------ ucuuu----- cuc-gauc-c 4141 cuucaa---- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU-G-CAUG |GCC|GC-UU UUG|GUCGG- U|GGA(-GUG 4261 A-)UUUGUU- -UGG(UU-GA UU)CCGUCA- AC-GGACGAG AUCCA-AG|- ---------- 4321 ------(--- --)[CUGCCC AG--uagaaa c--cagg-au uguccaaaag acag-caa-u 4381 ------cuuc u---guccug c-----(uuc g)-------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ------gcag u-caggaguu cc-------- auccaguu-- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ----gguuu- CU-------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------U CUCUGCAG]- --|------- ---------- GAuu-ccu-u -g-u(----- 5041 --uuugc-)a caag-g-ugA GAUU-UUGGG CAACAG--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UG A|UGCU|CC- 5221 U-CAA-UGUU CUGG-GCGAC A-CGCGCACU ACAAU--G-U CAGUG----- ---------- 5281 ---(------ ----)[agaa caagauu--- ---------- ---------- ---------- 5341 ---------- ----cccgua acaaggagu- ---------- ---------- ---------- 5401 -ccugcu-ug auu(caaaa) gagcg----g ggaaccaccg gaauca]--- ---------- 5461 -------cau aga-c-c--- CGAU-U-GGG ACCGAGGAU( UGCAAUUA)U UGGUCGCGCA 5521 ACGAGG-AAU G--UCUCGUA GG-CGC-AGC (-UCAUCAA- )ACUGU-G-C -CGAUUACG- 5581 U-CCCUGCCA UU|UGUA-CA CACCGCCCGU CGUUGU-U-U CC-GAU-gGA UG-GCGaa-- 5641 aua-cagg-- uug-uugga- cugg-c---- ---------- ---------- ---------- 5701 -------(uc cg--u-)--- ---------- ---------- ---------- ---------- 5761 -----g-ccg -ggaa-|gau -aaccgauau uu-aau-c-a uuag-AGGAA GC-AAnn-n- 5821 nnnnnnnnnn nn-------- -----n-n-n nnnnnn(nnn n)nnnnnnnn nnnnnnn--- 5881 --nnn~~~~~ ~~~~~~~~|| ||| // LOCUS T.borreli 5903 bp RNA RNA 11-JAN-191 DEFINITION Trypanoplasma borreli. ACCESSION No information KEYWORDS No information. SOURCE Trypanoplasma borreli. ORGANISM Trypanoplasma borreli. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: L14840 ID TBRRSS standard; RNA; INV; 2025 BP. XX AC L14840; XX DT 27-APR-1993 (Rel. 35, Created) DT 27-APR-1993 (Rel. 35, Last updated, Version 1) XX DE Trypanoplasma borreli ribosomal RNA small subunit. XX KW ribosomal RNA small subunit. XX OS Trypanoplasma borreli OC Eukaryota; Animalia; Protozoa; Sarcomastigophora; Mastigophora; OC Kinetoplastida; Bodonidae. XX RN [1] RP 1-2025 RA Maslov D.A., Simpson L.; RT "Phylogenetic analysis of fresh water fish parasites Trypanoplasma RT borreli and Trypanosoma sp. El-CP based on the sequences of small RT subunit ribosomal RNA"; RL Unpublished. XX FH Key Location/Qualifiers FH FT rRNA 1..2025 FT /standard_name="SSU rRNA" FT /product="ribosomal RNA small subunit" FT /label=SSUrRNA FT source 1..2025 FT /organism="Trypanoplasma borreli" FT /strain="Pg-JH" FT /sequenced_mol="rRNA" XX SQ Sequence 2025 BP; 530 A; 456 C; 524 G; 515 T; 0 other; BASE COUNT 530 a 456 c 524 g 515 t 3878 others ORIGIN 1 |~~~~~~~~~ ~~~~~nnnnn nnn(nnn)nn nn|nnnnnn- n-nnCA-UAU --GCUUGUUU 61 CAAG|-GACU AA-GCCAUGC A-UGCCU-CA GA|------- |-------(- ---)[----- 121 ---------- --------au aacugc---u ---------- -uu-g-cag- gaa]------ 181 -----|---U CU|G-CGCA- UGGCU-CAUU AUCu-caga- uau-aauc-- ----ugccgc 241 aaaa<----- ---------- ---------- --aucuugcg guuu-ccgca a--------- 301 ->AACUGG-A UAACUUGGC( -G-AAAA)GU CAAGC-UAA- UACAUG---- ----(----) 361 ---------- -------(-- --)--|---- -- -ucuuuugac -ga|auaacu gc|--UCU-A UCA--GCUAG U-GAUGGCC- 1141 GU(-GUAGUG G)ACU-GCCA U-|GGCGU-U GAC|GGAA-G --CGGG|GGA -U-(UAGG-) 1201 GUU-CGAUU- CCG|GAGAGG G-AGCC(U-G AGAAAU)AGC UACC-ACUUC (UACG-)GAG 1261 -GGCAGC-A- ---------| GGC-GC-GC- AAAUU-GCCC -AAUGUC-A( aaaaaaaa)A 1321 GAUG-A-GGC -|A|GCGAAA AGAA-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AG GCCUCCCAG- --Ac-(---- ---uucg)-G U--UU-GGGA ---GACAAUG 1501 ---GGGGAUA ----UUUAAU -GCCA--UCC A-----AA-A U-CGA-GUAU C---->AAUU 1561 GGAG|GA-CA A-GU-C-UG- U-G(CCA-GC -ACCC|GC-G GU-AA)UUCC AG-|CUCCAA 1621 A-AGCGUA|U AUUAA--CGC UGUUG-CUG| UUA--AAGGG UUCGUAGUUG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 aauug-uggg c-uaug-uga ga-------- ---------- gcuucg-auc ---------- 1801 ---------- -----cg-u- ccuuca-ugg -gccucgacu cuucua-gcu c--------- 1861 -----gugaa c-auuc---g aaacaaguaa cacgggagug guuccuuccc uaucu----- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ------cg-- ---cauguaa ugcaugcagg ggggcgcccg ugauuuuu-a cugugacuaa 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- --------a- aaagugu-ga ccaaagcagu 2161 cauccga--- ---------- ---------- --ccugaauu acca------ ---------- 2221 ---agcaugg gauaacaaag cagcaa--cc uacgguacuu uaccguuaug gcuuuuguug 2281 guuuuaauag ucugugggac auuguaggaa ugugugacaa guggcgcucu uu-------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ------ugcg 2821 -cg-ccgccu -cc-ugggca accgggcuc- acuuuucucg g--aaugaag ga--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GAGU|UGUU ---------- 3001 --CGGGGGAG AA|--CGUAC UUGAACG-UG -AGAG(GU-G AAA---)UUC U-UAGA-C-C 3061 GCUCA-AAG- A-CGAACU-A CAGC(-GAAG )--GC|A--- UUCUCC-AA| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUA ---CUUUCCU -CAA-U|CA- A-GAACCAAA 3301 GUGUGGAGA- UCGAAGAUG( AUUA------ ---------- ---------- ---------- 3361 ---------- GAGAC)CA-U -UGUAG|UCC AC--ACC-AC AAACGAUGAC ACC|CA|--- 3421 -ugaauu-gg ggu-u-u--- ----(----- ---------) uuuugguggu ggcgugug-- 3481 ggguuuaccu cucacg--uc uc-------- ---cccaaau uuucaaauuu acgugcauuu 3541 ucaacu---- ---------- ---------- -------agc cuucaccggc uuuaacggga 3601 auauccucag cac------g u-uu-uuu-a -u-uucuucc ---------- ----acGC(- 3661 GAAA-)GCuu -GAGuu-aua -GUC|-U|C- AGGGGGGAGU AC--GU-UC( --GCAA-)GA 3721 GUG-AAACUU -AAAG--AAA -UUG|AC-GG -AA-UGGCA- -CCAC-AAGA ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --C-GU|-GG 4021 AGCGUGCG|G UU-UAAUUUG (ACUCAA-CA )CGGG--GAA CUUUACCAGA UC[cgg-aca 4081 gggu-gagga uu-----gac aga(uugagu g-u)------ ucuuu----- cuc-gauc-c 4141 cuugaa---- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU-G-CAUG |GCC|GC-UU UUG|GUCGG- U|GGA(-GUG 4261 A-)UUUGUU- -UGG(UU-GA UU)CCGUCA- AC-GGACGAG AUCCA-AG|- ---------- 4321 ------(--- --)[CUGCCC AG--uaggaa c--cagg-au uguccaaaag acag-caa-u 4381 -------cuu u---cgcgua c-----(uuc g)-------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ------guac aaggaagcua c--------- cuccaguu-- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ----gguuu- cu-------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------U CUCUGCAG]- --|------- ---------- GAuu-ccu-u -g-u(----- 5041 --cucuc-)g caag-g-ugA GAUU-UUGGG CAACAG--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UG A|UGCU|CC- 5221 U-CAA-UGUU CUGG-GCGAC A-CGCGCACU ACAAU--G-U CAGUG----- ---------- 5281 ---(------ ----)[agaa caagauu--- ---------- ---------- ---------- 5341 ---------- ---c-c-cu( -uacc)ggag u--------- ---------- ---------- 5401 -ccugcu-ug auu(caaaa) gagcg----g ggaaucaccg gaauca]--- ---------- 5461 -------cau aga-c-c--- cAAU-U-GGG ACCGAGGAU( UGCAAUUA)U UGGUCGCGCA 5521 ACGAGG-AAU G--UCUCGUA GG-CGC-AGU (-UCAUCAA- )ACUGU-G-C -CGAUUACG- 5581 U-CCCUGCCA UU|UGUA-CA CACCGCCCGU CGUUGU-U-U CC-GAU--GA UG-GUGca-- 5641 aua-cagg-- uga-ucgga- cugu-gcg-- ggu------- ---------- ---------- 5701 -------(uc ua--u-)--- ---------- ---------- ---------- ---------- 5761 au-ccg-ccg -gaaa-|gac -caccgauau uu-cuu-c-a uuag-AGGAA GC-AAAA-G- 5821 Unnnnnnnnn nn-------- -----n-n-n nnnnnn(nnn n)nnnnnnnn nnnnnnn--- 5881 --nnn~~~~~ ~~~~~~~~|| ||| // LOCUS T.cruzi 5903 bp RNA RNA 11-JAN-191 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: X53917 LOCUS TRBSSRRNA 2240 bp ds-DNA INV 22-MAY-1992 DEFINITION T.cruzi small subunit ribosomal RNA gene ACCESSION X53917 KEYWORDS small subunit ribosomal RNA. SOURCE Trypanosoma cruzi DNA. ORGANISM Trypanosoma cruzi Eukaryota; Animalia; Protozoa; Sarcomastigophora; Mastigophora; Kinetoplastida; Trypanosomatina; Trypanosomatidae. REFERENCE 1 (bases 1 to 2240) AUTHORS Nelson,K. and Beverley,S.M. TITLE Evolution of nuclear small subunit ribosomal RNAs in kinetoplastid protozoans: New perspectives on the evolution of vertebrate parasitism JOURNAL Unpublished (1992) STANDARD full automatic COMMENT *source: strain=Peru; *source: stage=promastigote; From EMBL entry TCSSRRNA; dated 27-APR-1992. FEATURES Location/Qualifiers misc_feature 1..2012 /note="transcribed region" /gene="nuclear small subunit ribosomal RNA" BASE COUNT 563 a 504 c 587 g 586 t ORIGIN BASE COUNT 563 a 504 c 587 g 586 t 3663 others ORIGIN 1 |~~~~~~~~~ ~~~~~nnnnn nnn(nnn)nn nn|nnnnnU- A-GUCA-UAU --GCUUGUUU 61 CAAG|-GACU UA-GCCAUGC A-UGCCU-CA GA|------- |-------(- ---)[----- 121 ---------- --------au cacugc--au ---------- --u-g-cag- gaa]------ 181 -----|---U CU|G-CGCA- UGGCU-CAUU ACAu-caga- cgu-aauc-- ----ugccgc 241 aaaa<----- ---------- ---------- --aucuugcg gucu-ccgca a--------- 301 ->CAUUGG-A UAACUUGGC( -G-AAAC)GC CAAGC-UAA- UACAUG---- ----(----) 361 ---------- -------(-- --)--|---- -- -ucuuuugac -ga|acaacu gc|--CCU-A UCA--GCCAG C-GAUGGCC- 1141 GU(-GUAGUG G)ACU-GCCA U-|GGCGU-U GAC|GGGA-G --CGGG|GGA -U-(UAGG-) 1201 GUU-CGAUU- CCG|GAGAGG G-AGCC(U-G AGAAAU)AGC UACC-ACUUC (UACG-)GAG 1261 -GGCAGC-A- ---------| GGC-GC-GC- AAAUU-GCCC -AAUGUC-A( aaaaaaaa)A 1321 GAUG-A-GGC -|A|GCGAAA AGAA-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AG AGCCGACAG- --UGC(---- ---uuuu)GC A--UU-GUCG U-UUUCAAUG 1501 ---GGGGAUA ----UUUAAA -CCCA--UCC A-----AA-A U-CGA-GUAA C---->AAUU 1561 GGAG|GA-CA A-GU-C-UGG U-G(CCA-GC -ACCC|GC-G GU-AA)UUCC AG-|CUCCAA 1621 A-AGCGUA|U AUUAA--UGC UGUUG-CUG| UUA--AAGGG UUCGUAGUUG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 aauug-aggg c-cucu-aag gc--gc--aa ug-guuuagu cccauc-cac ---------- 1801 ---------- -----uu-c- ggauug-gug -acccaugcc cuugug-guc c--------- 1861 ---gugaaca g-acauucag aaacaaaaaa cacgggagug guaccuuuuc ucuga----- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ------uua- ucgcauguca ugcaugccag agggcgcccg ugauuuuuua cugugacuaa 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- --------a- aaagugu-ga ccaaagcagu 2161 cauucga--- ---------- ---------- --cuugaauu agaa------ ---------- 2221 ---agcaugg gauaacaaag gagcag--cc ucugggccac cguuucggcu uuuguugguu 2281 uuaaaagucc auuggagauu auggggcagu gugacaagcg gcuggguggu uauuccacac 2341 acauacacac ucccuuuuuu uugg------ ---------- ---------- ---------- 2401 ---------- ---------- ---------- ----gacgug uuuguaugug uguggcacuc 2461 gucgccuuug ---ugggaaa uccgugugg- -------c-- ---------- -acuguuugu 2521 guuguuggca gacu-u-cgg ucuuacccuu cgcauc---- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ------ucac 2821 -au-guguca -ug-ccuucc cucaacuca- cggcauccag g--aaugaag ga--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGU|AGUU ---------- 3001 --CGGGGGAG AA|--CGUAC UGGUGCG-UC -AGAG(GU-G AAA---)UUC U-UAGA-C-C 3061 GCACC-AAG- A-CGAACU-A CAGC(-GAAG )--GC|A--- UUCUUC-AA| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUA ---CCUUCCU -CAA-U|CA- A-GAACCAAA 3301 GUGUGGGGA- UCGAAGAUG( AUUA------ ---------- ---------- ---------- 3361 ---------- GAGAC)CA-U -UGUAG|UCC AC--ACU-GC AAACGAUGAC ACC|CA|--- 3421 -ugaauu-gg gga-g-u--- ----(----- ---------) uuuuggucgu aggcgugguc 3481 ggguuugauu auuuuuuuuc aucccguucc ucgucucgcc aaugaauauu aaaauuuacg 3541 ugcauauucu uuuugguccu cguuuuu--- ------uuac gacgagggcc uuuaacggga 3601 auauccucag cac------g uuau-cug-a -c-uucuuc- ---------- ----acGC(- 3661 GAAA-)GCuu uGAGgu-uac aGUC|-U|C- AGGGGGGAGU AC--GU-UC( --GCAA-)GA 3721 GUG-AAACUU -AAAG--AAA -UUG|AC-GG -AA-UGGCA- -CCAC-AAGA ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --C-GU|-GG 4021 AGCGUGCG|G UU-UAAUUUG (ACUCAA-CA )CGGG--GAA CUUUACCAGA UC[cgg-aca 4081 gggu-gagga uu-----gac aga(uugagu g-u)------ ucuuu----- cuc-gauc-c 4141 ccugaa---- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU-G-CAUG |GCC|GC-UU UUG|GUCGG- U|GGA(-GUG 4261 A-)UUUGUU- -UGG(UU-GA UU)CCGUCA- AC-GGACGAG AUCCA-AG|- ---------- 4321 ------(--- --)[CUGCCC AG--uaggau u--caga-au ugcccauagg auag-caa-u 4381 -----cccuu c---cgcggg u-----(uuu -)-------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ------acca agggggggcg gu-------- auucgcuu-- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ----guauc- cu-------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------U CUCUGCGG]- --|------- ---------- GAuu-ccu-u -g-u(----- 5041 --uuugc-)g caag-g-ugA GAUU-UUGGG CAACAG--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UG A|UGCU|CC- 5221 U-CAA-UGUU CUGG-GCGAC A-CGCGCACU ACAAU--G-U CAGUG----- ---------- 5281 ---(------ ----)[agaa caagaaa--- ---------- ---------- ---------- 5341 ---------- ---aacgac( -ucuu)gucg g--------- ---------- ---------- 5401 accuacu-ug auc(aaaa-) gagug----g gaaaaccccg gaauca]--- ---------- 5461 -------cgu aga-c-c--- cACU-U-GGG ACCGAGUAU( UGCAAUUA)U UGGUCGCGCA 5521 ACGAGG-AAU G--UCUCGUA GG-CGC-AGC (-UCAUCAA- )ACUGU-G-C -CGAUUACG- 5581 U-CCCUGCCA UU|UGUA-CA CACCGCCCGU CGUUGU-U-U CC-GAU--GA UG-GUGca-- 5641 aua-cagg-- uga-ucgga- cagu-cga-- gug------- ---------- ---------- 5701 -------(cu u-----)--- ---------- ---------- ---------- ---------- 5761 cacuug-acc -gaaa-|guu -caccgauau uu-cuu-c-a auag-AGGAA GC-AAnn-n- 5821 nnnnnnnnnn nn-------- -----n-n-n nnnnnn(nnn n)nnnnnnnn nnnnnnn--- 5881 --nnn~~~~~ ~~~~~~~~|| ||| // LOCUS T.cruzi.la 5903 bp RNA RNA 11-JAN-191 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: M31432 LOCUS TRCRGSS 2319 bp ds-DNA INV 19-SEP-1990 DEFINITION T.cruzi ribosomal RNA small subunit gene. ACCESSION M31432 KEYWORDS ribosomal RNA. SOURCE T.cruzi (strain La Cruz, jalisco) DNA, clones pRTC[20,42]. ORGANISM Trypanosoma cruzi Eukaryota; Animalia; Protozoa; Sarcomastigophora; Mastigophora; Kinetoplastida; Trypanosomatina; Trypanosomatidae. REFERENCE 1 (bases 1 to 2319) AUTHORS Hernandez,R., Rios,P., Valdes,A.M. and Pinero,D. TITLE Primary structure of Trypanosoma cruzi small subunit ribosomal RNA coding region: Comparison with other trypanosomatids JOURNAL Mol. Biochem. Parasitol. 41, 207-212 (1990) STANDARD full staff_entry COMMENT Draft entry and computer-readable sequence for [1] kindly submitted by R.Hernandez, 18-JAN-1990. FEATURES from to/span description rRNA 1 2319 ribosomal RNA small subunit BASE COUNT 583 a 512 c 612 g 612 t ORIGIN BASE COUNT 583 a 512 c 612 g 612 t 3584 others ORIGIN 1 |~~~~~~~~~ ~~~~~GAUCU GGU(UGA)UU CU|GCCAGU- A-GUCA-UAU --GCUUGUUU 61 CAAG|-GACU UA-GCCAUGC A-UGCCU-CA GA|------- |-------(- ---)[----- 121 ---------- --------au cacugc--au ---------- -u--g-cag- gaa]------ 181 -----|---U CU|G-CGCA- UGGCU-CAUU ACAu-caga- cgu-aauc-- ----ugccgc 241 aaaa<----- ---------- ---------- --aucuugcg gucu-ccgaa ---------- 301 ->AAUUGG-A UAACUUGGC( -G-AAAG)CC CAAGC-UAA- UACAUG---- ----(----) 361 ---------- -------(-- --)--|---- -- -ucuuuugac -ga|acaacu gc|--CCU-A UCA--GCCAG C-GAUGGCC- 1141 GU(-GUAGUG G)ACU-GCCA U-|GGCGU-U GAC|GGGA-G --CGGG|GGA -U-(UAGG-) 1201 GUU-CGAUU- CCG|GAGAGG G-AGCC(U-G AGAAAU)AGC UACC-ACUUC (UACG-)GAG 1261 -GGCAGC-A- ---------| GGC-GC-GC- AAAUU-GCCC -AAUGUC-A( aaaaaaaa)A 1321 GAUG-A-GGC -|A|GCGAAA AGAA-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AG AGCCGACAG- --UGC(---- ---uuuu)GC A--UU-GUCG U-UUUCAAUG 1501 ---GGGGAUA ----UU-AAA -ccca--ucc A-----AA-A U-CGA-GUAA C---->AAUU 1561 GGAG|GA-CA A-GU-C-UGG U-G(CCA-GC -ACCC|GC-G GU-AA)UUCC AG-|CUCCAA 1621 A-AGCGUA|U AUUAA--UGC UGUUG-CUG| UUA--AAGGG UUCGUAGUUG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 aauug-aggg c-cucu-aag gcgcaa--u- g---guuuag ucccau-cca ---------- 1801 ---------- -----cu-u- cggauu-ggu -gacccaugc ccuugu-ggu cc-------- 1861 gugaacagac a-uauucaga aacaaaaaac acgggagugg uaccuuuucu gauua----- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ------u--- -cgcauguca ugcaugccag agggcgcccg ugauuuuuua cugugacuaa 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- --------a- aaagugu-ga ccaaagcagu 2161 cauucga--- ---------- ---------- --cuugaauu agaa------ ---------- 2221 ---agcaugg gauaacaaag gagcag-ccu cuggggccac cguuucggcu uuuguugguu 2281 uuaaaagucc auuggagauu auggggcagu gugacaagcg gcuggguggu uauuccacac 2341 acacacgcac acuccuuuuu ugga------ ---------- ---------- ---------- 2401 ---------- ---------- ---------- ----uguugu gucuucugug ugugugcgaa 2461 cucgucgccu uu-gugggaa auccaggug- -------u-- ---------- -ggcacuugu 2521 uugguguugu uggc-a-ga- cuucggucuu |gccuuccaa -uguuuc--- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ----|acaug 2821 --u-gucaug -cc-uucccu c--aacuca- cggcauccag g--aaugaag ga--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGU|AGUU ---------- 3001 --CGGGGGAG AA|--CGUAC UGGUGCG-UC -AGAG(GU-G AAA---)UUC U-UAGA-C-C 3061 GCACC-AAG- A-CGAACU-A CAGC(-GAAG )--GC|A--- UUCUUC-AA| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUA ---CCUUCCU -CAA-U|CA- A-GAACCAAA 3301 GUGUGGGGA- UCGAAGAUG( AUUA------ ---------- ---------- ---------- 3361 ---------- GAGAC)CA-U -UGUAG|UCC AC--ACU-GC AAACGAUGAC ACC|CA|--- 3421 -ugaauu-gg gga-g-u--- ----(----- ---------) uuuuggucgu aggcgugguc 3481 gggcuugauu auauuauuuu ucaucccguu ccucgucucg ccaaugaaua uauuaaauuu 3541 acgugcauau ucuuuuuggu cuucguuuuu -----uuuac ggcgaggacc uuuaacggga 3601 auauccucag cac------g uuau-cug-a -c-uucuuc- ---------- ----acGC(- 3661 GAAA-)GCuu UGAGGu-uac aGUC|-U|C- AGGGGGGAGU AC--GU-UC( --GCAA-)GA 3721 GUG-AAACUU -AAAG--AAA -UUG|AC-GG -AA-UGGCA- -CCAC-AAGA ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --C-GU|-GG 4021 AGCGUGCG|G UU-UAAUUUG (ACUCAA-CA )CGGG--GAA CUUUACCAGA UC[cgg-aca 4081 gggu-gagga uu-----gac aga(uugagu g-u)------ ucuuu----- cuc-gauc-c 4141 ccugaa---- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU-G-CAUG |GCC|GC-UU UUG|GUCGG- U|GGA(-GUG 4261 A-)UUUGUU- -UGG(UU-GA UU)CCGUCA- AC-GGACGAG AUCCA-AG|- ---------- 4321 ------(--- --)[CUGCCC Ag--uaggau u--caga-au ugcccauagg auag-caa-u 4381 -----cccuu c---cgcggg u-----(uuu -)-------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ------accc aagggggggc gg-------u auucgcuu-- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ----guauc- CU-------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------U CucugCGG]- --|------- ---------- GAuu-ccu-u -g-u(----- 5041 --uuugc-)g caag-g-ugA GAUU-UUGGG CAACAG--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UG A|UGCU|CC- 5221 U-CAA-UGUU CUGG-GCGAC A-CGCGCACU ACAAU--G-U CAGUG----- ---------- 5281 ---(------ ----)[agaa caagaaa--- ---------- ---------- ---------- 5341 ---------- ----acgac( -ucuu)gucg a--------- ---------- ---------- 5401 -ccuacu-ug auc(aaaa-) gagug----g gaaaaccccg gaauca]--- ---------- 5461 -------cgu aga-c-c--- cACU-U-GGG ACCGAGUAU( UGCAAUUA)U UGGUCGCGcA 5521 ACGAGG-AAU G--UCUCGUA GG-CGC-AGC (-UCAUCAA- )ACUGU-G-C -CGAUUACG- 5581 U-CCCUGCCA UU|UGUA-CA CACCGCCCGU CGUUGU-U-U CC-GAU--ga ug-gugca-- 5641 aua-cagg-- uga-ucgga- cagu-cgag- ug-------- ---------- ---------- 5701 -------(cu u-----)--- ---------- ---------- ---------- ---------- 5761 cacuug-acc -gaaa-|guu -caccgauau uu-cuu-c-a auag-AGGAA GC-AAAA-G- 5821 UCGUAACAAG GU-------- -----A-G-C UGUAGG(UGA A)CCUGCAGC UGGAUCA--- 5881 --UUUU~~~~ ~~~~~~~~|| ||| // LOCUS T.brucei 5903 bp RNA RNA 13-JAN-1985 DEFINITION Trypanosome brucei. ACCESSION No information KEYWORDS No information. SOURCE Trypanosome brucei. ORGANISM Trypanosome brucei. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: M12676 Phylo:Eukaryotes,Protozoan BASE COUNT 526 a 552 c 606 g 567 t 3652 others ORIGIN 1 |~~~~~~~~~ ~~~~~GAUCU GGU(UGA)UU CU|GCCAGU- A-GUCA-UAU --GCUUGUUU 61 CAAG|-GACU UA-GCCAUGC A-UGCCU-CA GA|------- |-------(- ---)[----- 121 ---------- --------au cacugc--au ---------- -u--g-cag- gaa]------ 181 -----|---U CU|G-CGCA- UGGCU-CAUU ACAu-caga- cgu-aauc-- ----ugccgc 241 caaa<----- ---------- ---------- --auuuugcg gucu-ccgca ---------- 301 u>UACUGG-A UAACUUGGC( -G-AAAC)GC CAAGC-UAA- UACAUG---- ----(----) 361 ---------- -------(-- --)--|---- -- -ucuacugac -ga|acaacu gc|--CCU-A UCA--GCCAG U-GAUGGCC- 1141 GU(-GUAGUG G)ACU-GCCA U-|GGCGU-U GAC|GGGA-G --CGGG|GGA -U-(UAGG-) 1201 GUU-CGAUU- CCG|GAGAGG G-AGCC(U-G AGAAAU)AGC UACC-ACUUC (UACG-)GAG 1261 -GGCAGC-A- ---------| GGC-GC-GC- AAAUU-GCCC -AAUGUC-G( aaaaaaua)C 1321 GAUG-A-GGC -|A|GCGAAA AGAA-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AG agcCGACCG- --UGC(---- -ccuagu)GC A--UG-GUUG u-UUUCAAUG 1501 ---GGGGAUA ----CUCAAA -ccca--ucc a-----aU-A U-CGA-GUAA C---->AAUU 1561 GGAG|GA-CA A-GU-C-UGG U-G(CCA-GC -ACCC|GC-G GU-AA)UUCC AG-|CUCCAA 1621 A-AGCGUA|U AUUAA--UGC UGUUG-CUG| UUA--AAGGG UUCGUAGUUG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 aacug-uggg c-cacg-uag uuuugu--gc cg-ugccagu cccguc-cac ---------- 1801 ---------- -----cu-c- ggacgu-guu -uugacccac gcccuc-gug gc-------- 1861 cc---gugaa c-acacucag auacaagaaa cacgggagcg guuccuccuc acuuu----- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ------ca-- -cgcauguca ugcaugcgag ggggcguccg ugaauuuu-a cugugaccaa 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- --------a- aaagugc-ga ccaaagcagu 2161 cugccga--- ---------- ---------- --cuugaauu acaa------ ---------- 2221 ---agcaugg gauaacgaag caucag--cc cuggggccac cguuucggcu uuuguugguu 2281 uuagaagucc uugggagauu auggggccgc gugccuuggg ucgguguuuc ---------- 2341 ---------- ---gugucuc auuu------ ---------- ---------- ---------- 2401 ---------- ---------- ---------- ----uugugg cgcgcacauu cggcucuucg 2461 ugauguuuuu u--------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---|------ ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ---------- 2821 ---------u -ac-auucau ugcgacgcg- cggcuuccag g--aaugaag GA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGU|AGUU ---------- 3001 --CGGGGGAG AA|--CGUAC UGGUGCG-UC -AGAG(GU-G AAA---)UUC U-UAGA-C-C 3061 GCACC-AAG- A-CGAACU-A CAGC(-GAAG )--GC|A--- UUCUUC-AA| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUA ---CCUUCCU -CAA-U|CA- A-GAACCAAA 3301 GUGUGGGGA- UCAAAGAUG( AUUA------ ---------- ---------- ---------- 3361 ---------- GAGAC)CA-U -UGUAG|UCC AC--ACU-GC AAACCAUGAC ACC|CA|--- 3421 -ugaauu-gg gga-a-c--- ----(----- ---------) aucauugggu gcccgugugg 3481 cggccuuuug ugccgacccu cggccccaau uuauuuauca auuuacgugc cuauucuauc 3541 acccccgguu cccucuuuug a--------- -----gguuc uuccgggguu uuuuacggga 3601 auauccucag cac------g u-uu-cuu-a -c-uucuuc- ---------- ----acGC(- 3661 GAAA-)GCuu GGAGgu-uac aGUC|-U|C- AGGGGGGAGU AC--GU-UC( --GCAA-)GA 3721 GUG-AAACUU -AAAG--AAA -UUG|AC-GG -AA-UGGCA- -CCAC-AAGA ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --C-GU|-GG 4021 AGCGUGCG|G UU-UAAUUUG (ACUCAA-CA )CGGG--GAA CUUUACCAGA UC[cgg-aca 4081 gggu-gagga uu-----gac aga(uggagu g-u)------ ucuuu----- cuc-gauc-c 4141 ccugaa---- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU-G-CAUG |GCC|GC-UU UUG|GUCGG- U|GGA(-GUG 4261 A-)UUUGUU- -UGG(UU-GA UU)CCGUCA- AC-GGACGAG AUCCA-AG|- ---------- 4321 ------(--- --)[CUGCCC Ag--uaggug c--cggg-au uguccacaca ggac-agcag 4381 uc----ccuc c---ggcggg ga----(uuu u)u------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 -----ucccc aacggugguc gucauccuuc uuuuuaca-- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ----ggccc- CU-------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------U CucugCGG]- --|------- ---------- GAuu-ccu-u -g-c(----- 5041 uuuucgc-)g caag-g-ugA GAUU-UUGGG CAACAG--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UG A|UGCU|CC- 5221 U-CAA-UGUU CUGG-GCGAC A-CGCGCACU ACAAU--G-U CAGUG----- ---------- 5281 ---(------ ----)[agaa caagagu--- ---------- ---------- ---------- 5341 ------ccga gcggcacuu( --cac)aaug ucgcuc---- ---------- ---------- 5401 --ccgcu-ug auc(aaaa-) gagcg----g ggaaaccacg gaauca]--- ---------- 5461 -------cgu aga-c-c--- cACU-U-GGG ACCGAGUAU( UGCAAUUA)U UGGUCGCGcA 5521 ACGAGG-AAU G--UCUCGUA GG-CGC-AGC (-UCAUCAA- )ACUGU-G-C -CGAUUACG- 5581 U-CCCUGCCA UU|UGUA-CA CACCGCCCGU CGUUGU-U-U CC-GAU--GA UG-GUGca-- 5641 aua-cagg-- uga-ucgga- ccgu-cgcu- cg-------- ---------- ---------- 5701 -------(uc u-----)--- ---------- ---------- ---------- ---------- 5761 cgggcg-acc -gaaa-|guu -caccgauau ug-cuu-c-a auag-AGGAA GC-AAAA-G- 5821 UCGUAACAAG GU-------- -----A-G-C UGUAGG(UGA A)CCUGCAGC UGGAUCA--- 5881 --UUU~~~~~ ~~~~~~~~|| ||| // LOCUS H.muscarum 5903 bp RNA RNA 11-JAN-191 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: L18872 LOCUS HEMRRSSU 2112 bp ss-rRNA RNA 01-JUN-1993 DEFINITION Herpetomonas muscarum muscarum ribosomal RNA small subunit. ACCESSION L18872 KEYWORDS ribosomal RNA small subunit. SOURCE Herpetomonas muscarum (sub_species muscarum) rRNA. ORGANISM Herpetomonas muscarum Eukaryota; Animalia; Protozoa; Sarcomastigophora; Mastigophora; Kinetoplastida; Bodonidae. REFERENCE 1 (bases 1 to 2112) AUTHORS Maslov,D.A. and Simpson,L. TITLE Phylogenetic relationships among kinetoplastid protozoa JOURNAL Unpublished (1993) STANDARD full automatic FEATURES Location/Qualifiers rRNA 1..2112 /product="ribosomal RNA small subunit" /gene="rRNA SSU" /label=SSUrRNA /note="putative" source 1..2112 /organism="Herpetomonas muscarum" /sub_species="muscarum" /sequenced_mol="rRNA" BASE COUNT 530 a 473 c 567 g 542 t ORIGIN BASE COUNT 530 a 473 c 567 g 542 t 3791 others ORIGIN 1 |~~~~~~~~~ ~~~~~nnnnn nnn(nnn)nn nn|nnnnnn- n-nnCA-UAU --GCUUGUUU 61 CAAG|-GACU UA-GCCAUGC A-UGCCU-CA GA|------- |-------(- ---)[----- 121 ---------- --------au cacugc--ac ---------- -uu-g-cag- gag]------ 181 -----|---U CU|G-CGCA- UGGCU-CAUU ACAu-caga- cgu-aauc-- ----ugccgc 241 aaaa<----- ---------- ---------- --auuuugcg gucu-ccgca a--------- 301 ->CAUUGG-A UAACUUGGC( -G-AAAA)GC -AAGC-UAA- UACAUG---- ----(----) 361 ---------- -------(-- --)--|---- -- -ucuuuugac -ga|acaacu gc|--CCU-A UCA--GCU-G U-GAUGGCC- 1141 GU(-GUAGUG G)ACU-GCCA U-|GGCGU-U GAC|GGGA-G --CGGG|GGA -U-(UAGG-) 1201 GUU-CGAUU- CCG|GAGAGG G-AGCC(U-G AGAAAU)AGC UACC-ACUUC (UACG-)GAG 1261 -GGCAGC-A- ---------| GGC-GC-GC- AAAUU-GCCC -AAUGUC-A( aaaaaaac)- 1321 GAUG-A-GGC -|A|GCGAAA AGAA-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AG GGUUGUCAG- --UCC(---- ---aauu)GG A--UU-GUCA --UUUCAAUG 1501 ---GGGGAUA ----UUUAAA -CCCA--UCC A-----AU-A U-CGA-GUAA C---->AAUU 1561 GGAG|GA-CA A-GU-C-UGG U-G(CCA-GC -ACCC|GC-G GU-AA)UUCC AG-|CUCCAA 1621 A-AGCGUA|U AUUAA--UGC UGUUG-CUG| UUA--AAGGG UUCGUAGUUG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 aauugagggc c-guga-agg gcuauu--uu cu-cugguaa guccug-ucc ---------- 1801 ---------- -----aa-a- ccggau-uag -gacccagac ccuugc-ggu cc-------- 1861 --gugaacga a-guuuucgg auacaagaaa cacgggagug guuccuuucc ugauu----- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ------ua-- -cgcauguca ugcaugccag ggggcguccg ugauuuuu-a cugugacuaa 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- --------a- gaagugu-ga cuaaagcagu 2161 cguucga--- ---------- ---------- --cuugaauu agca------ ---------- 2221 ---agcaugg gauaacaaag gagcag--cc uuuaggcuac cguuucggcu uuuguugguu 2281 uuagaugucu auuggagauu augagaccgu gcgacaagcg uuccgugcuu gc-------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- acug-g-cgc cugugucugg guucaa---- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ------ccgg 2821 -gu-uuucuc -gg-cgccca gucacuucg- cggucuucag g--aaugaag ga--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGU|AGU- ---------- 3001 --CGGGGGAG AA|--CGUAC UGGGGCG-UG -AGAG(GU-G AAA---)UUC U-UAGA-C-C 3061 GCACC-AAG- A-CGAACU-A CAGC(-GAAG )--GC|A--- UUCUUC-AA| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUA ---CCUUCCU -CAA-U|CA- A-GAACCAAA 3301 GUGCGGGGA- UCGAAGAUG( AUUA------ ---------- ---------- ---------- 3361 ---------- GAGAC)CA-U -UGUAG|UCC GC--ACU-GC AAACGAUGAC ACC|CA|--- 3421 -ugaauu-gg gga-g-u--- ----(----- ---------) uugguugcgc uccggaggcu 3481 uccuugugaa guccuucggg ccaccguuac uaauuuacgu gcauauuccu uauaggcccu 3541 gccuuc---- ---------- ---------- ------acgg guaggugucc uccuacgcga 3601 auauccucag cac------g u-uu-cuu-c -u-uuuuuc- ---------- ----acGC(- 3661 GAAA-)GCuu -GAGgu-uac aGUC|-U|C- AGGGGGGAGU AC--GU-UC( --GCAA-)GA 3721 GUG-AAACUU -AAAG--AAA -UUG|AC-GG -AA-UGGCA- -CCAC-AAGA ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --C-GU|-GG 4021 AGCGUGCG|G UU-UAAUUUG (ACUCAA-CA )CGGG--GAA CUUUACCAGA UC[cgg-aca 4081 ggau-gagga uu-----gac aga(uugagu g-u)------ ucuuu----- cuc-gauu-c 4141 ccugaa---- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU-G-CAUG |GCC|GC-UU UUG|GUCGG- U|GGA(-GUG 4261 A-)UUUGUU- -UGG(UU-GA UU)CCGUCA- AC-GGACGAG AUCCA-AG|- ---------- 4321 ------(--- --)[CUGCCC AG--uagaau u--caga-au uguccauaga auag-caa-u 4381 ------cuug c---cacuag g-----(uuc u)u------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ------ccua gcgguaagca gc-------- auucgguc-- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ----gaauu- cu-------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------U CUCUGCGG]- --|------- ---------- GAuu-ccu-u -g-u(----- 5041 uucuugc-)a caag-g-ugA GAUU-UUGGG CAACAG--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UG A|UGCU|CC- 5221 U-CAA-UGUU CUGG-GCGAC A-CGCGCACU ACAAU--G-U CAGUG----- ---------- 5281 ---(------ ----)[agaa caagaaa--- ---------- ---------- ---------- 5341 ---------- ---aacgac( -uuuc)gucg g--------- ---------- ---------- 5401 accuacu-ug auc(aaaa-) gagug----g ggaaaccacg gaauca]--- ---------- 5461 -------cau aga-c-cc-- gUUU-U-GGG ACCGAGGAU( UGCAAUUA)U UGGUCGCGCA 5521 ACUAGG-AAU G--UCUCGUA GG-CGC-AGC (-UCAUCAA- )ACUGU-G-C -CGAUUACG- 5581 U-CCCUGCCA UU|UGUA-CA CACCGCCCGU CGUUGU-U-U CC-GAU--GA UG-GUGca-- 5641 aua-cagg-- uga-ucgga- cagg-ugga- -cg------- ---------- ---------- 5701 -------(uu ua----)--- ---------- ---------- ---------- ---------- 5761 cguccg-ccc -gaaa-|guu -caccgauau uu-cuu-c-a uuag-AGGAA GC-AAAA-G- 5821 Unnnnnnnnn nn-------- -----n-n-n nnnnnn(nnn n)nnnnnnnn nnnnnnn--- 5881 --nnn~~~~~ ~~~~~~~~|| ||| // LOCUS L.adleri 5903 bp RNA RNA 11-JAN-191 DEFINITION Leishmania adleri. ACCESSION No information KEYWORDS No information. SOURCE Leishmania adleri. ORGANISM Leishmania adleri. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: M80291 LOCUS LEIRRSSA 882 bp ss-rRNA RNA 31-MAR-1992 DEFINITION Leishmania adleri small subunit ribosomal RNA. ACCESSION M80291 KEYWORDS ribosomal RNA small subunit. SOURCE Leishmania adleri (strain NLB148) rRNA. ORGANISM Leishmania adleri Eukaryota; Animalia; Protozoa; Sarcomastigophora; Mastigophora; Kinetoplastida; Trypanosomatina; Trypanosomatidae. REFERENCE 1 (bases 1 to 882) AUTHORS Ebeling,S.B., Kroon,C., Schoone,G.J. and Van Eys,G. TITLE Sequence analysis of small subunit ribosomal RNA genes and its use for detection and identification of Leishmania parasites JOURNAL Mol. Biochem. Parasitol. 51, 133-142 (1992) STANDARD full staff_entry FEATURES Location/Qualifiers rRNA 1..882 /note="This sequence is identical to that of Leishmania tarentolae" /product="small subunit ribosomal RNA" /gene="small subunit rRNA" BASE COUNT 205 a 203 c 242 g 232 t ORIGIN BASE COUNT 205 a 203 c 242 g 232 t 5021 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~(~~~)~~ ~~|~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~|~~~~~~~ |~~~~~~~(~ ~~~)[~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~]~~~~~~ 181 ~~~~~|~~~~ ~~|~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~<~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 ~>~~~~~~~~ ~~~~~~~~~( ~~~~~~~)~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~) 361 ~~~~~~~~~~ ~~~~~~~(~~ ~~)~~|~~~~ ~~<~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~)~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~)~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~|~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~)~~ ~~~~~~~~~~ 1081 ~~~~~~~~~> ~~~~~~~~~~ ~~~|~~~~~~ ~~|~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~(~~~~~~~ ~)~~~~~~~~ ~~|~~~~~~~ ~~~|~~~~~~ ~~~~~~|~~~ ~~~(~~~~~) 1201 ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~(~~~ ~~~~~~)~~~ ~~~~~~~~~~ (~~~~~)~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~( ~~~~~~~~)~ 1321 ~~~~~~~~~~ ~|~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~)~~~ ~~~~~~~~~~ 1381 |~~~~|~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~)~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~(~~~~ ~~~~~~~)~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~>~~~~ 1561 ~~~~|~~~~~ ~~~~~~~~~~ ~~~(~~~~~~ ~~~CC|GC-G GU-AA)UUCC AG-|CUCCAA 1621 A-AGCGUA|U AUUAA--UGC UGUUG-CUG| UUA--AAGGG UUCGUAGUUG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 aacug-uggg c-ugug-cag guuugu--uc cu-ggucguc ccgucc-aug ---------- 1801 ---------- -----uc-g- gauuug-gug -acccaggcc cuugca-gcc c--------- 1861 -----gugaa c-auucaaag aaacaagaaa cacgggagug guuccuuucc ugauu----- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ------ua-- -cgcauguca ugcaugccag ggggcguccg ugauuuuuua cugugacuaa 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- --------a- gaagcgu-ga cuaaagcagu 2161 cauuuga--- ---------- ---------- --cuugaauu agaa------ ---------- 2221 ---agcaugg gauaacaaag gagcag--cc ucuaggcuac cguuucggcu uuuguugguu 2281 uuaaaggucu auuggagauu auggagcugu gcgacaaggc uuucccaucg caac------ 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---uucgguu cggugugug- -------g-- ---------- -cgccuuuga 2521 --ggggguuu agug-c-guc cggugcgagc uccggu---- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ------ucgu 2821 -cc-ggccgu -aa-cgccuu uucaacuca- cggccucuag g--aaugaag ga--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGU|AGUU ---------- 3001 --CGGGGGAG AA|--CGUAC UGGGGCG-UC -AGAG(GU-G AAA---)UUC U-UAGA-C-C 3061 GCACC-AAG- A-CGAACU-A CAGC(-GAAG )--GC|A--- UUCUUC-AA| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUA ---CCUUCCU -CAA-U|CA- A-GAACCAAA 3301 GUGUGGAGA- UCGAAGAUG( AUUA------ ---------- ---------- ---------- 3361 ---------- GAGAC)CA-U -UGUAG|UCC AC--ACU-GC AAACGAUGAC ACC|CA|--- 3421 -ugaauu-gg gga-u-c--- ----(----- ---------) uuaugggccg gccugcggca 3481 ggguuuaccc uguguccagc accgcgc--- ---ccgcuuu uaccagcuua cguauccuuu 3541 cuauuc---- ---------- ---------- ------ggcc uuuaccggcc acccacggga 3601 auauccucag cac------g u-uu-ucu-g -u-uuuuuc- ---------- ----acGC(- 3661 GAAA-)GCuu uGAGgu-uac aGUC|-U|C- AGGGGGGAGU AC--GU-UC( --GCAA-)GA 3721 GUG-AAACUU -AAAG--AAA -UUG|AC-G~ -~~-~~~~~- -~~~~-~~~~ ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --~-~~|-~~ 4021 ~~~~~~~~|~ ~~-~~~~~~~ ~~~~~~~-~~ ~~~~~--~~~ ~~~~~~~~~~ ~~[~~~-~~~ 4081 ~~~~~~~~~~ ~~-----~~~ ~~~(~~~~~~ ~-~)------ ~~~~~----- ~~~-~~~~~~ 4141 ~~~~~~~~~~ ~]~~~~~~~~ |~~~~~~~~~ ~~~~~(~~~~ )~~~~~~~~~ ~~~(~~~~)~ 4201 ~~~|~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ |~~~|~~~~~ ~~~|~~~~~- ~|~~~(~~~~ 4261 ~-)~~~~~~~ ~~~~(~~~~~ ~~)~~~~~~~ ~~-~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ 4321 ~~~~~~(~~~ ~~)[~~~~~~ ~~~~~~~~~~ ~--~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4381 ~~~--~~~~~ ~---~~~~~~ ~~~~~~(~~~ ~)~-~~~~~~ ~~~~~~~~~~ -~~~~~~~~~ 4441 --~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------~ ~~~~~~~~]~ ~~|~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~~~~(~~~~~ 5041 ~~~~~~~~)~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~--~~ ~~~------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ---~~~~~~~ ~|~~~~|~~~ 5221 ~~~~~~~~~~ ~~~~~~~~~~ ~-~~~~~~~~ ~~~~~--~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5281 ~~~(-~~~~~ ~~~~)[~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5341 ~~~~~~~~~~ ~~~~~~~~~( ~~~~~)~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5401 ~~~~~~~-~~ ~~~(~~~~~) ~~~~~~--~~ ~~~~~~~~~~ ~~~~~~]~~~ ~~~~~~~~~~ 5461 ~~~~~~~~~~ ~~~~~-~~-- ~~~~-~-~~~ ~~~~~~~~~( ~~~~~~~~)~ ~~~~~~~~~~ 5521 ~~~~~~-~~~ ~--~~~~~~~ ~~-~~~~~~~ (-~~~~~~~- )~~~~~~~-~ ~~~~~~~~~- 5581 ~~~~~~~~~~ ~~|~~~~-~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5641 ~~~-~~~~~- ~~~-~~~~~- ~~~~-~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ---------- 5701 -------(~~ ~~~~~~)~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~-~ 5761 ~~~~~~~~~~ -~~~~-|~~~ ~~~~~~~~~~ ~~-~~~~~-~ ~~~~~~~~~~ ~~~~~~~~~~ 5821 ~~~~~~~~~~ ~~-------- -----~~~-~ ~~~~~~(~~~ ~)~~~~~~~~ ~~~~~~~~~~ 5881 ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS L.aethiopi 5903 bp RNA RNA 11-JAN-191 DEFINITION Leishmania aethiopica subsp. was Leishmania aethiopia. ACCESSION No information KEYWORDS No information. SOURCE Leishmania aethiopica subsp. was Leishmania aethiopia. ORGANISM Leishmania aethiopica. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: M81428 LOCUS LEIRRSSAE 882 bp ss-rRNA RNA 31-MAR-1992 DEFINITION Leishmania aethiopia small subunit ribosomal RNA. ACCESSION M81428 KEYWORDS ribosomal RNA small subunit. SOURCE Leishmania aethiopia (strain NLB161) rRNA. ORGANISM Leishmania aethiopia Eukaryota; Animalia; Protozoa; Sarcomastigophora; Mastigophora; Kinetoplastida; Trypanosomatina; Trypanosomatidae. REFERENCE 1 (bases 1 to 882) AUTHORS Ebeling,S.B., Kroon,C., Schoone,G.J. and Van Eys,G. TITLE Sequence analysis of small subunit ribosomal RNA genes and its use for detection and identification of Leishmania parasites JOURNAL Mol. Biochem. Parasitol. 51, 133-142 (1992) STANDARD full staff_entry FEATURES Location/Qualifiers rRNA 1..882 /note="This sequence is identical to that of Leishmania Leishmania tropica, strain NLB162, and Leishmania major, strain NLB765." /product="small subunit ribosomal RNA" /gene="small subunit rRNA" BASE COUNT 205 a 204 c 240 g 233 t ORIGIN BASE COUNT 205 a 204 c 240 g 233 t 5021 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~(~~~)~~ ~~|~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~|~~~~~~~ |~~~~~~~(~ ~~~)[~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~]~~~~~~ 181 ~~~~~|~~~~ ~~|~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~<~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 ~>~~~~~~~~ ~~~~~~~~~( ~~~~~~~)~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~) 361 ~~~~~~~~~~ ~~~~~~~(~~ ~~)~~|~~~~ ~~<~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~)~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~)~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~|~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~)~~ ~~~~~~~~~~ 1081 ~~~~~~~~~> ~~~~~~~~~~ ~~~|~~~~~~ ~~|~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~(~~~~~~~ ~)~~~~~~~~ ~~|~~~~~~~ ~~~|~~~~~~ ~~~~~~|~~~ ~~~(~~~~~) 1201 ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~(~~~ ~~~~~~)~~~ ~~~~~~~~~~ (~~~~~)~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~( ~~~~~~~~)~ 1321 ~~~~~~~~~~ ~|~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~)~~~ ~~~~~~~~~~ 1381 |~~~~|~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~)~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~(~~~~ ~~~~~~~)~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~>~~~~ 1561 ~~~~|~~~~~ ~~~~~~~~~~ ~~~(~~~~~~ ~~~CC|GC-G GU-AA)UUCC AG-|CUCCAA 1621 A-AGCGUA|U AUUAA--UGC UGUUG-CUG| UUA--AAGGG UUCGUAGUUG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 aacug-uggg c-ugug-cag guuugu--uc cu-ggucguc ccgucc-aug ---------- 1801 ---------- -----uc-g- gauuug-gug -acccaggcc cuugca-gcc c--------- 1861 -----gugaa c-auucaaag aaacaagaaa cacgggagug guuccuuucc ugauu----- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ------ua-- -cgcauguca ugcaugccag ggggcguccg ugauuuuuua cugugacuaa 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- --------a- gaagcgu-ga cuaaagcagu 2161 cauuuga--- ---------- ---------- --cuugaauu agaa------ ---------- 2221 ---agcaugg gauaacaaag gagcag--cc ucuaggcuac cguuucggcu uuuguugguu 2281 uuaaaggucu auuggagauu auggagcugu gcgacaagug cuuucccauc gcaac----- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---uucgguu cggugugug- -------g-- ---------- -cgccuuug- 2521 --agggguuu agug-c-guc cggugcgagc uccggu---- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ------ucgu 2821 -cc-ggccgu -aa-cgccuu uucaacuca- cggccucuag g--aaugaag ga--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGU|AGUU ---------- 3001 --CGGGGGAG AA|--CGUAC UGGGGCG-UC -AGAG(GU-G AAA---)UUC U-UAGA-C-C 3061 GCACC-AAG- A-CGAACU-A CAGC(-GAAG )--GC|A--- UUCUUC-AA| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUA ---CCUUCCU -CAA-U|CA- A-GAACCAAA 3301 GUGUGGAGA- UCGAAGAUG( AUUA------ ---------- ---------- ---------- 3361 ---------- GAGAC)CA-U -UGUAG|UCC AC--ACU-GC AAACGAUGAC ACC|CA|--- 3421 -ugaauu-gg gga-u-c--- ----(----- ---------) uuaugggccg gccugcggca 3481 ggguuuaccc uguguccagc accgcgc--- ---ccgcuuu uaccaccuua cguauccuuu 3541 cuauuc---- ---------- ---------- ------ggcc uuuaccggcc acccacggga 3601 auauccucag cac------g u-uu-ucu-g -u-uuuuuc- ---------- ----acGC(- 3661 GAAA-)GCuu uGAGgu-uac aGUC|-U|C- AGGGGGGAGU AC--GU-UC( --GCAA-)GA 3721 GUG-AAACUU -AAAG--AAA -UUG|AC-G~ -~~-~~~~~- -~~~~-~~~~ ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --~-~~|-~~ 4021 ~~~~~~~~|~ ~~-~~~~~~~ ~~~~~~~-~~ ~~~~~--~~~ ~~~~~~~~~~ ~~[~~~-~~~ 4081 ~~~~~~~~~~ ~~-----~~~ ~~~(~~~~~~ ~-~)------ ~~~~~----- ~~~-~~~~~~ 4141 ~~~~~~~~~~ ~]~~~~~~~~ |~~~~~~~~~ ~~~~~(~~~~ )~~~~~~~~~ ~~~(~~~~)~ 4201 ~~~|~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ |~~~|~~~~~ ~~~|~~~~~- ~|~~~(~~~~ 4261 ~-)~~~~~~~ ~~~~(~~~~~ ~~)~~~~~~~ ~~-~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ 4321 ~~~~~~(~~~ ~~)[~~~~~~ ~~~~~~~~~~ ~--~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4381 ~~~--~~~~~ ~---~~~~~~ ~~~~~~(~~~ ~)~-~~~~~~ ~~~~~~~~~~ -~~~~~~~~~ 4441 --~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------~ ~~~~~~~~]~ ~~|~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~~~~(~~~~~ 5041 ~~~~~~~~)~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~--~~ ~~~------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ---~~~~~~~ ~|~~~~|~~~ 5221 ~~~~~~~~~~ ~~~~~~~~~~ ~-~~~~~~~~ ~~~~~--~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5281 ~~~(-~~~~~ ~~~~)[~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5341 ~~~~~~~~~~ ~~~~~~~~~( ~~~~~)~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5401 ~~~~~~~-~~ ~~~(~~~~~) ~~~~~~--~~ ~~~~~~~~~~ ~~~~~~]~~~ ~~~~~~~~~~ 5461 ~~~~~~~~~~ ~~~~~-~~-- ~~~~-~-~~~ ~~~~~~~~~( ~~~~~~~~)~ ~~~~~~~~~~ 5521 ~~~~~~-~~~ ~--~~~~~~~ ~~-~~~~~~~ (-~~~~~~~- )~~~~~~~-~ ~~~~~~~~~- 5581 ~~~~~~~~~~ ~~|~~~~-~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5641 ~~~-~~~~~- ~~~-~~~~~- ~~~~-~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ---------- 5701 -------(~~ ~~~~~~)~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~-~ 5761 ~~~~~~~~~~ -~~~~-|~~~ ~~~~~~~~~~ ~~-~~~~~-~ ~~~~~~~~~~ ~~~~~~~~~~ 5821 ~~~~~~~~~~ ~~-------- -----~~~-~ ~~~~~~(~~~ ~)~~~~~~~~ ~~~~~~~~~~ 5881 ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS L.amazonen 5903 bp RNA RNA 11-JAN-191 DEFINITION Leishmania amazonensis. ACCESSION No information KEYWORDS No information. SOURCE Leishmania amazonensis. ORGANISM Leishmania amazonensis. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: X53912 LOCUS LEINSSRRNA 2138 bp ds-DNA INV 02-MAY-1992 DEFINITION L.amazonensis nuclear small subunit ribosomal RNA gene ACCESSION X53912 KEYWORDS small subunit ribosomal RNA. SOURCE Leishmania amazonensis DNA. ORGANISM Leishmania amazonensis Eukaryota; Animalia; Protozoa; Sarcomastigophora; Mastigophora; Kinetoplastida; Trypanosomatina; Trypanosomatidae. REFERENCE 1 (bases 1 to 2138) AUTHORS Nelson,K. and Beverley,S.M. TITLE Evolution of nuclear small subunit ribosomal RNAs in kinetoplastid protozoans: New perspectives on the evolution of vertebrate parasitism JOURNAL Unpublished (1992) STANDARD full automatic COMMENT *source: strain=LTB0016; *source: stage=promasigote; *source: cell_line=LTB0016; From EMBL entry LANSSRRNA; dated 24-APR-1992. FEATURES Location/Qualifiers misc_feature 1..2138 /note="transcribed region" /gene="nuclear small subunit ribosomal RNA" BASE COUNT 536 a 495 c 571 g 536 t ORIGIN BASE COUNT 536 a 495 c 571 g 536 t 3765 others ORIGIN 1 |~~~~~~~~~ ~~~~~nnnnn nnn(nnn)nn nn|nnnnnU- A-GUCA-UAU --GCUUGUUU 61 CAAG|-GACU UA-GCCAUGC A-UGCCU-CA GA|------- |-------(- ---)[----- 121 ---------- --------au cacugc--au ---------- -uu-g-cag- gaa]------ 181 -----|---U CU|G-CGCA- UGGCU-CAUU ACAu-caga- cgu-aauc-- ----ugccgc 241 aaaa<----- ---------- ---------- --accuugcg guuu-ccgca a--------- 301 ->AAUUGG-A UAACUUGGC( -G-AAAC)GC CAAGC-UAA- UACAUG---- ----(----) 361 ---------- -------(-- --)--|---- -- -ucuuuugac -ga|acaacu gc|--CCU-A UCA--GCUGG U-GAUGGCC- 1141 GU(-GUAGUG G)ACU-GCCA U-|GGCGU-U GAC|GGGA-G --CGGG|GGA -U-(UAGG-) 1201 GUU-CGAUU- CCG|GAGAGG G-AGCC(U-G AGAAAU)AGC UACC-ACUUC (UACG-)GAG 1261 -GGCAGC-A- ---------| GGC-GC-GC- AAAUU-GCCC -AAUGUC-A( aaacaaaa)C 1321 GAUG-A-GGC -|A|GCGAAA AGAA-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AG AGUUGUCAG- --UCC(---- ---auuu)GG A--UU-GUCA --UUUCAAUG 1501 ---GGGGAUA ----UUUAAA -CCCA--UCC A-----AU-A U-CGA-GUAA C---->AAUU 1561 GGAG|GA-CA A-GU-C-UGG U-G(CCA-GC -ACCC|GC-G GU-AA)UUCC AG-|CUCCAA 1621 A-AGCGUA|U AUUAA--UGC UGUUG-CUG| UUA--AAGGG UUCGUAGUUG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 aacug-uggg c-ugug-cag guuugu--uc cu-ggucguc ccgucc-aug ---------- 1801 ---------- -----uc-g- gauuug-gug -acccaggcc cuugca-gcc c--------- 1861 -----gugaa c-auucaaag aaacaagaaa cacgggagug guuccuuucc ugauu----- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ------ua-- -cgcauguca ugcaugccag ggggcguccg ugauuuuuua cugugacuaa 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- --------a- gaagcgu-ga cuaaagcagu 2161 cauuuga--- ---------- ---------- --cuugaauu agaa------ ---------- 2221 ---agcaugg gauaacaaag gagcag--cc ucuaggcuac cguuucggcu uuuguugguu 2281 uuaaaggucu auuggagauu auggagcugu gcgacaagug cuuucccauc gcaac----- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---uucgguu cggugugug- -------g-- ---------- -cgccuuug- 2521 -gagggguuu agug-c-guc cggugcgagc uccggu---- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ------ucgu 2821 -cc-ggccgu -aa-cgccuu uucaacuca- cggccucuag g--aaugaag ga--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGU|AGUU ---------- 3001 --CGGGGGAG AA|--CGUAC UGGGGCG-UC -AGAG(GU-G AAA---)UUC U-UAGA-C-C 3061 GCACC-AAG- A-CGAACU-A CAGC(-GAAG )--GC|A--- UUCUUC-AA| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUA ---CCUUCCU -CAA-U|CA- A-GAACCAAA 3301 GUGUGGAGA- UCGAAGAUG( AUUA------ ---------- ---------- ---------- 3361 ---------- GAGAC)CA-U -UGUAG|UCC AC--ACU-GC AAACGAUGAC ACC|CA|--- 3421 -ugaauu-gg gga-u-c--- ----(----- ---------) uuaugggccg gccugcggca 3481 ggguuuaccc uguguc-agc accgcgc--- ---ccgcuuu uaccaacuua cguaucuuuu 3541 cuauuc---- ---------- ---------- ------ggcc uuuaccggcc acccacggga 3601 auauccucag cac------g u-uu-ucu-g -u-uuuuuc- ---------- ----acGC(- 3661 GAAA-)GCuu uGAGgu-uac aGUC|-U|C- AGGGGGGAGU AC--GU-UC( --GCAA-)GA 3721 GUG-AAACUU -AAAG--AAA -UUG|AC-GG -AA-UGGCA- -CCAC-AAGA ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --C-GU|-GG 4021 AGCGUGCG|G UU-UAAUUUG (ACUCAA-CA )CGGG--GAA CUUUACCAGA UC[cgg-aca 4081 ggau-gagga uu-----gac aga(uugagu g-u)------ ucuuu----- cuc-gauu-c 4141 ccugaa---- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU-G-CAUG |GCC|GC-UU UUG|GUCGG- U|GGA(-GUG 4261 A-)UUUGUU- -UGG(UU-GA UU)CCGUCA- AC-GGACGAG AUCCA-AG|- ---------- 4321 ------(--- --)[CUGCCC AG--uagaau u--caga-au ugcccauaga auag-caa-a 4381 -----cucau c---ggcggg u-----(uuu -)-------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ------accc aacggugggc cg-------c auucgguc-- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ----gaauu- cu-------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------U CUCUGCGG]- --|------- ---------- GAuu-ccu-u ug-u(----- 5041 -aauugc-)a caag-g-ugA AAUU-UUGGG CAACAG--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UG A|UGCU|CC- 5221 U-CAA-UGUU CUGG-GCGAC A-CGCGCACU ACAAU--G-U CAGUG----- ---------- 5281 ---(------ ----)[agaa caagaaa--- ---------- ---------- ---------- 5341 ---------- ---aacgac( -uuuu)gucg a--------- ---------- ---------- 5401 accuacu-ug auc(aaaa-) gagug----g ggaaaccccg gaauca]--- ---------- 5461 -------cau aga-c-c--- cACU-U-GGG ACCGAGGAU( UGCAAUUA)U UGGUCGCGCA 5521 ACGAGG-AAU G--UCUCGUA GG-CGC-AGC (-UCAUCAA- )ACUGU-G-C -CGAUUACG- 5581 U-CCCUGCCA UU|UGUA-CA CACCGCCCGU CGUUGU-U-U CC-GAU--GA UG-GUGca-- 5641 aua-cagg-- uga-ucgga- cagg-cgg-- -ug------- ---------- ---------- 5701 -------(uu u-----)--- ---------- ---------- ---------- ---------- 5761 uauccg-ccc -gaaa-|guu -caccgauau uu-cuu-c-a auag-AGGAA GC-AAnn-n- 5821 nnnnnnnnnn nn-------- -----n-n-n nnnnnn(nnn n)nnnnnnnn nnnnnnn--- 5881 --nnn~~~~~ ~~~~~~~~|| ||| // LOCUS L.brazil.1 5903 bp RNA RNA 11-JAN-191 DEFINITION Leishmania braziliensis. ACCESSION No information KEYWORDS No information. SOURCE Leishmania braziliensis. ORGANISM Leishmania braziliensis. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: X53913 LOCUS LEISSRRNA 2139 bp ds-DNA INV 02-MAY-1992 DEFINITION L.braziliensis small subunit ribosomal rRNA gene ACCESSION X53913 KEYWORDS small subunit ribosomal RNA. SOURCE Leishmania brasiliensis DNA. ORGANISM Leishmania brasiliensis Eukaryota; Animalia; Protozoa; Sarcomastigophora; Mastigophora; Kinetoplastida; Trypanosomatina; Trypanosomatidae. REFERENCE 1 (bases 1 to 2139) AUTHORS Nelson,K. and Beverley,S.M. TITLE Evolution of nuclear small subunit ribosomal RNAs in kinetoplastid protozoans: New perspectives on the evolution of vertebrate parasitism JOURNAL Unpublished (1992) STANDARD full automatic COMMENT *source: strain=m4147; *source: stage=promastigote; *source: cell_line=m4147; From EMBL entry LBSSRRNA; dated 24-APR-1992. FEATURES Location/Qualifiers misc_feature 1..2139 /note="transcribed region" /gene="nuclear small subunit ribosomal RNA" BASE COUNT 535 a 495 c 572 g 536 t 1 others ORIGIN BASE COUNT 535 a 495 c 572 g 536 t 3765 others ORIGIN 1 |~~~~~~~~~ ~~~~~nnnnn nnn(nnn)nn nn|nnnnnU- A-GUCA-UAU --GCUUGUUU 61 CAAG|-GACU UA-GCCAUGC A-UGCCU-CA GA|------- |-------(- ---)[----- 121 ---------- --------au cacugc--au ---------- -uu-g-cag- gaa]------ 181 -----|---U CU|G-CGCA- UGGCU-CAUU ACAu-caga- cgu-aauc-- ----ugccgc 241 aaaa<----- ---------- ---------- --aucuugcg guuu-ccgca a--------- 301 ->AAUUGG-A UAACUUGGC( -G-AAAC)GC CAAGC-UAA- UACAUG---- ----(----) 361 ---------- -------(-- --)--|---- -- -ucuuuugac -ga|acaacu gc|--CCU-A UCA--GCUGG U-GAUGGCC- 1141 GU(-GUAGUG G)ACU-GCCA U-|GGCGU-U GAC|GGGA-G --CGGG|GGA -U-(UAGG-) 1201 GUU-CGAUU- CCG|GAGAGG G-AGCC(U-G AGAAAU)AGC UACC-ACUUC (UACG-)GAG 1261 -GGCAGC-A- ---------| GGC-GC-GC- AAAUU-GCCC -AAUGUC-A( aaacaaaa)C 1321 GAUG-A-GGC -|A|GCGAAA AGAA-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AG AGUUGUCAG- --UCC(---- ---auuu)GG A--UU-GUCA U-UUNCAAUG 1501 ---GGGGAUA ----UUUAAA -CCCA--UCC A-----AU-A U-CGA-GUAA C---->AAUU 1561 GGAG|GA-CA A-GU-C-UGG U-G(CCA-GC -ACCC|GC-G GU-AA)UUCC AG-|CUCCAA 1621 A-AGCGUA|U AUUAA--UGC UGUUG-CUG| UUA--AAGGG UUCGUAGUUG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 aacug-uggg c-ugug-cag guuugu--cc cu-ggucguc ccgucc-aug ---------- 1801 ---------- -----uc-g- gauuug-gug -acccaggcc cuugca-gcc c--------- 1861 -----gugaa c-auucaaag aaacaagaaa cacgggagug guuccuuucc ugauu----- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ------ua-- -cgcauguca ugcaugccag ggggcguccg ugauuuuuua cugugacuaa 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- --------a- gaagcgu-ga cuaaagcagu 2161 cauucga--- ---------- ---------- --cuugaauu agaa------ ---------- 2221 ---agcaugg gauaacaaag gagcag--cc ucuaggcuac cguuucggcu uuuguugguu 2281 uuaaaggucu auuggagauu auggagcugu gcgacaagug cuuucccauc gcaac----- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---uucgguu cggugugug- -------g-- ---------- -cgccuuug- 2521 -gagggguuu agug-c-guc cggugcgagc uccggu---- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ------ucgu 2821 -cc-ggccgu -aa-cgccuu uucaacuca- cggccucuag g--aaugaag ga--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGU|AGUU ---------- 3001 --CGGGGGAG AA|--CGUAC UGGGGCG-UC -AGAG(GU-G AAA---)UUC U-UAGA-C-C 3061 GCACC-AAG- A-CGAACU-A CAGC(-GAAG )--GC|A--- UUCUUC-AA| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUA ---CCUUCCU -CAA-U|CA- A-GAACCAAA 3301 GUGUGGAGA- UCGAAGAUG( AUUA------ ---------- ---------- ---------- 3361 ---------- GAGAC)CA-U -UGUAG|UCC AC--ACU-GC AAACGAUGAC ACC|CA|--- 3421 -ugaauu-gg gga-u-c--- ----(----- ---------) uuaugggccg gccugcggca 3481 ggguuuaccc uguguc-agc accgcgc--- ---ccgcuuu uaccaacuua cguaucuuuu 3541 cuauuc---- ---------- ---------- ------ggcc uuuaccggcc acccacggga 3601 auauccucag cac------g u-uu-ucu-g -u-uuuuuc- ---------- ----acGC(- 3661 GAAA-)GCuu uGAGgu-uac aGUC|-U|C- AGGGGGGAGU AC--GU-UC( --GCAA-)GA 3721 GUG-AAACUU -AAAG--AAA -UUG|AC-GG -AA-UGGCA- -CCAC-AAGA ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --C-GU|-GG 4021 AGCGUGCG|G UU-UAAUUUG (ACUCAA-CA )CGGG--GAA CUUUACCAGA UC[cgg-aca 4081 ggau-gagga uu-----gac aga(uugagu g-u)------ ucuuu----- cuc-gauu-c 4141 ccugaa---- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU-G-CAUG |GCC|GC-UU UUG|GUCGG- U|GGA(-GUG 4261 A-)UUUGUU- -UGG(UU-GA UU)CCGUCA- AC-GGACGAG AUCCA-AG|- ---------- 4321 ------(--- --)[CUGCCC AG--uagaau u--caga-au uguccauagg auag-caa-a 4381 -----cucau c---ggcggg u-----(uuu -)-------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ------accc aacggugggc cg-------c auucgguc-- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ----gaauu- cu-------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------U CUCUGCGG]- --|------- ---------- GAuu-ccu-u ug-u(----- 5041 -aauugc-)a caag-g-ugA AAUU-UUGGG CAACAG--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UG A|UGCU|CC- 5221 U-CAA-UGUU CUGG-GCGAC A-CGCGCACU ACAAU--G-U CAGUG----- ---------- 5281 ---(------ ----)[agaa caagaaa--- ---------- ---------- ---------- 5341 ---------- ---aacgac( -uuuu)gucg a--------- ---------- ---------- 5401 accuacu-ug auc(aaaa-) gagug----g ggaaaccccg gaauca]--- ---------- 5461 -------cau aga-c-c--- cACU-U-GGG ACCGAGGAU( UGCAAUUA)U UGGUCGCGCA 5521 ACGAGG-AAU G--UCUCGUA GG-CGC-AGC (-UCAUCAA- )ACUGU-G-C -CGAUUACG- 5581 U-CCCUGCCA UU|UGUA-CA CACCGCCCGU CGUUGU-U-U CC-GAU--GA UG-GUGca-- 5641 aua-cagg-- uga-ucgga- cagg-cgg-- -ug------- ---------- ---------- 5701 -------(uu u-----)--- ---------- ---------- ---------- ---------- 5761 uauccg-ccc -gaaa-|guu -caccgauau uu-cuu-c-a auag-AGGAA GC-AAnn-n- 5821 nnnnnnnnnn nn-------- -----n-n-n nnnnnn(nnn n)nnnnnnnn nnnnnnn--- 5881 --nnn~~~~~ ~~~~~~~~|| ||| // LOCUS L.brazil.2 5903 bp RNA RNA 11-JAN-191 DEFINITION Leishmania braziliensis subsp. was Leishmania brasiliensis. ACCESSION No information KEYWORDS No information. SOURCE Leishmania braziliensis subsp. was Leishmania brasiliensis. ORGANISM Leishmania braziliensis. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: M81416 LOCUS LEIRRSSBG 883 bp ss-rRNA RNA 31-MAR-1992 DEFINITION Leishmania brasiliensis guanensis small subunit ribosomal RNA. ACCESSION M81416 KEYWORDS ribosomal RNA small subunit. SOURCE Leishmania brasiliensis (sub_species guanensis) rRNA. ORGANISM Leishmania brasiliensis Eukaryota; Animalia; Protozoa; Sarcomastigophora; Mastigophora; Kinetoplastida; Trypanosomatina; Trypanosomatidae. REFERENCE 1 (bases 1 to 883) AUTHORS Ebeling,S.B., Kroon,C., Schoone,G.J. and Van Eys,G. TITLE Sequence analysis of small subunit ribosomal RNA genes and its use for detection and identification of Leishmania parasites JOURNAL Mol. Biochem. Parasitol. 51, 133-142 (1992) STANDARD full staff_entry FEATURES Location/Qualifiers rRNA 1..883 /note="This sequence is identical to that of Leishmania brasiliensis brasiliensis, strain WR675, and Leishmania brasiliensis panamensis" /product="small subunit ribosomal RNA" /gene="small subunit rRNA" BASE COUNT 204 a 205 c 243 g 231 t ORIGIN BASE COUNT 204 a 205 c 243 g 231 t 5020 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~(~~~)~~ ~~|~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~|~~~~~~~ |~~~~~~~(~ ~~~)[~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~]~~~~~~ 181 ~~~~~|~~~~ ~~|~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~<~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 ~>~~~~~~~~ ~~~~~~~~~( ~~~~~~~)~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~) 361 ~~~~~~~~~~ ~~~~~~~(~~ ~~)~~|~~~~ ~~<~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~)~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~)~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~|~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~)~~ ~~~~~~~~~~ 1081 ~~~~~~~~~> ~~~~~~~~~~ ~~~|~~~~~~ ~~|~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~(~~~~~~~ ~)~~~~~~~~ ~~|~~~~~~~ ~~~|~~~~~~ ~~~~~~|~~~ ~~~(~~~~~) 1201 ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~(~~~ ~~~~~~)~~~ ~~~~~~~~~~ (~~~~~)~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~( ~~~~~~~~)~ 1321 ~~~~~~~~~~ ~|~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~)~~~ ~~~~~~~~~~ 1381 |~~~~|~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~)~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~(~~~~ ~~~~~~~)~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~>~~~~ 1561 ~~~~|~~~~~ ~~~~~~~~~~ ~~~(~~~~~~ ~~~CC|GC-G GU-AA)UUCC AG-|CUCCAA 1621 A-AGCGUA|U AUUAA--UGC UGUUG-CUG| UUA--AAGGG UUCGUAGUUG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 aacug-uggg c-ugug-cag guuugu--uc cu-ggucguc ccgucc-aug ---------- 1801 ---------- -----uc-g- gauuug-gug -acccaggcc cuugca-gcc c--------- 1861 -----gugaa c-auucaaag aaacaagaaa cacgggagug guuccuuucc ugauu----- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ------ua-- -cgcauguca ugcaugccag ggggcguccg ugauuuuuua cugugacuaa 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- --------a- gaagcgu-ga cuaaagcagu 2161 cauuuga--- ---------- ---------- --cuugaauu agaa------ ---------- 2221 ---agcaugg gauaacaaag gagcag--cc ucuaggcuac cguuucggcu uuuguugguu 2281 uuaaaggucu auuggagauu auggagcugu gcgacaagcg cucucccauc gcaac----- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---uucgguu cggugugug- -------g-- ---------- -cgccuuugg 2521 --agggguuu agug-c-guc cggugcgggc uccggu---- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ------ucgu 2821 -cc-ggccgu -aa-cgccuu uucaacuca- cggccucuag g--aaugaag ga--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGU|AGUU ---------- 3001 --CGGGGGAG AA|--CGUAC UGGGGCG-UC -AGAG(GU-G AAA---)UUC U-UAGA-C-C 3061 GCACC-AAG- A-CGAACU-A CAGC(-GAAG )--GC|A--- UUCUUC-AA| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUA ---CCUUCCU -CAA-U|CA- A-GAACCAAA 3301 GUGUGGAGA- UCGAAGAUG( AUUA------ ---------- ---------- ---------- 3361 ---------- GAGAC)CA-U -UGUAG|UCC AC--ACU-GC AAACGAUGAC ACC|CA|--- 3421 -ugaauu-gg gga-u-c--- ----(----- ---------) uuaugggccg gccugcggca 3481 ggguuuaccc uguguccagc accgcgc--- ---ccgcuuu uaccagcuua cguauccuuu 3541 cuauuc---- ---------- ---------- ------ggcc uuuaccggcc acccacggga 3601 auauccucag cac------g u-uu-ucu-g -u-uuuuuc- ---------- ----acGC(- 3661 GAAA-)GCuu uGAGgu-uac aGUC|-U|C- AGGGGGGAGU AC--GU-UC( --GCAA-)GA 3721 GUG-AAACUU -AAAG--AAA -UUG|AC-G~ -~~-~~~~~- -~~~~-~~~~ ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --~-~~|-~~ 4021 ~~~~~~~~|~ ~~-~~~~~~~ ~~~~~~~-~~ ~~~~~--~~~ ~~~~~~~~~~ ~~[~~~-~~~ 4081 ~~~~~~~~~~ ~~-----~~~ ~~~(~~~~~~ ~-~)------ ~~~~~----- ~~~-~~~~~~ 4141 ~~~~~~~~~~ ~]~~~~~~~~ |~~~~~~~~~ ~~~~~(~~~~ )~~~~~~~~~ ~~~(~~~~)~ 4201 ~~~|~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ |~~~|~~~~~ ~~~|~~~~~- ~|~~~(~~~~ 4261 ~-)~~~~~~~ ~~~~(~~~~~ ~~)~~~~~~~ ~~-~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ 4321 ~~~~~~(~~~ ~~)[~~~~~~ ~~~~~~~~~~ ~--~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4381 ~~~--~~~~~ ~---~~~~~~ ~~~~~~(~~~ ~)~-~~~~~~ ~~~~~~~~~~ -~~~~~~~~~ 4441 --~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------~ ~~~~~~~~]~ ~~|~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~~~~(~~~~~ 5041 ~~~~~~~~)~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~--~~ ~~~------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ---~~~~--- -|----|--- 5221 -------~~~ ~~~~~~~~~~ ~-~-~~~~~- ~~~~~--~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5281 ~~~(-~~~~~ ~~~~)[~~~~ ~~~------~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~~ 5341 ~~~~~~~~~~ ~~~~~~~~~( ~~~~~)~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5401 ~~~~~~~-~~ ~~~(~~~~~) ~~~~~~--~~ ~~~~~~~~~~ ~~~~~~]~~~ ~~~~~~~~~~ 5461 ~~~~~~~~~~ ~~~~~-~~-- ~~~~-~-~~~ ~~~~~~~~~( ~~~~~~~~)~ ~~~~~~~~~~ 5521 -~~~~~--~~ ~--~~~~~~- ~--~~~~~~~ (-~~~~~~~- )~~~~~~~-~ ~~~~~~~~~- 5581 ~~~~~~~~~~ ~~|~~~~-~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5641 ~~~-~~~~~- ~~~-~~~~~- ~~~~-~~~~- ~~~~~~-~~~ ~~~~~~~~~~ ---------- 5701 -------(~~ ~~~~~~)~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~-~ 5761 ~~~~~~~~~~ -~-~~-|~~~ ~~~~~~~~~~ ~~-~~~~~-~ ~~~~~~~~~~ ~~~~~~~~~~ 5821 ~~~~~~~~~~ ~~-------- -----~~~-~ ~~~~~~(~~~ ~)~~~~~~~~ ~~~~~~~~~~ 5881 ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS L.brazil.3 5903 bp RNA RNA 11-JAN-191 DEFINITION Leishmania braziliensis subsp. was Leishmania brasiliensis. ACCESSION No information KEYWORDS No information. SOURCE Leishmania braziliensis subsp. was Leishmania brasiliensis. ORGANISM Leishmania braziliensis. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: M81421 LOCUS LEIRRSSBP 883 bp ss-rRNA RNA 31-MAR-1992 DEFINITION Leishmania brasiliensis panamensis small subunit ribosomal RNA. ACCESSION M81421 KEYWORDS ribosomal RNA small subunit. SOURCE Leishmania brasiliensis (sub_species panamensis) rRNA. ORGANISM Leishmania brasiliensis Eukaryota; Animalia; Protozoa; Sarcomastigophora; Mastigophora; Kinetoplastida; Trypanosomatina; Trypanosomatidae. REFERENCE 1 (bases 1 to 883) AUTHORS Ebeling,S.B., Kroon,C., Schoone,G.J. and Van Eys,G. TITLE Sequence analysis of small subunit ribosomal RNA genes and its use for detection and identification of Leishmania parasites JOURNAL Mol. Biochem. Parasitol. 51, 133-142 (1992) STANDARD full staff_entry FEATURES Location/Qualifiers rRNA 1..883 /note="This sequence is identical to that of Leishmania brasiliensis brasiliensis, strain WR675, and Leishmania brasiliensis guanensis" /product="small subunit ribosomal RNA" /gene="small subunit rRNA" BASE COUNT 204 a 205 c 243 g 231 t ORIGIN BASE COUNT 204 a 205 c 243 g 231 t 5020 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~(~~~)~~ ~~|~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~|~~~~~~~ |~~~~~~~(~ ~~~)[~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~]~~~~~~ 181 ~~~~~|~~~~ ~~|~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~<~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 ~>~~~~~~~~ ~~~~~~~~~( ~~~~~~~)~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~) 361 ~~~~~~~~~~ ~~~~~~~(~~ ~~)~~|~~~~ ~~<~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~)~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~)~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~|~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~)~~ ~~~~~~~~~~ 1081 ~~~~~~~~~> ~~~~~~~~~~ ~~~|~~~~~~ ~~|~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~(~~~~~~~ ~)~~~~~~~~ ~~|~~~~~~~ ~~~|~~~~~~ ~~~~~~|~~~ ~~~(~~~~~) 1201 ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~(~~~ ~~~~~~)~~~ ~~~~~~~~~~ (~~~~~)~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~( ~~~~~~~~)~ 1321 ~~~~~~~~~~ ~|~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~)~~~ ~~~~~~~~~~ 1381 |~~~~|~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~)~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~(~~~~ ~~~~~~~)~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~>~~~~ 1561 ~~~~|~~~~~ ~~~~~~~~~~ ~~~(~~~~~~ ~~~CC|GC-G GU-AA)UUCC AG-|CUCCAA 1621 A-AGCGUA|U AUUAA--UGC UGUUG-CUG| UUA--AAGGG UUCGUAGUUG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 aacug-uggg c-ugug-cag guuugu--uc cu-ggucguc ccgucc-aug ---------- 1801 ---------- -----uc-g- gauuug-gug -acccaggcc cuugca-gcc c--------- 1861 -----gugaa c-auucaaag aaacaagaaa cacgggagug guuccuuucc ugauu----- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ------ua-- -cgcauguca ugcaugccag ggggcguccg ugauuuuuua cugugacuaa 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- --------a- gaagcgu-ga cuaaagcagu 2161 cauuuga--- ---------- ---------- --cuugaauu agaa------ ---------- 2221 ---agcaugg gauaacaaag gagcag--cc ucuaggcuac cguuucggcu uuuguugguu 2281 uuaaaggucu auuggagauu auggagcugu gcgacaagcg cucucccauc gcaac----- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---uucgguu cggugugug- -------g-- ---------- -cgccuuugg 2521 --agggguuu agug-c-guc cggugcgggc uccggu---- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ------ucgu 2821 -cc-ggccgu -aa-cgccuu uucaacuca- cggccucuag g--aaugaag ga--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGU|AGUU ---------- 3001 --CGGGGGAG AA|--CGUAC UGGGGCG-UC -AGAG(GU-G AAA---)UUC U-UAGA-C-C 3061 GCACC-AAG- A-CGAACU-A CAGC(-GAAG )--GC|A--- UUCUUC-AA| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUA ---CCUUCCU -CAA-U|CA- A-GAACCAAA 3301 GUGUGGAGA- UCGAAGAUG( AUUA------ ---------- ---------- ---------- 3361 ---------- GAGAC)CA-U -UGUAG|UCC AC--ACU-GC AAACGAUGAC ACC|CA|--- 3421 -ugaauu-gg gga-u-c--- ----(----- ---------) uuaugggccg gccugcggca 3481 ggguuuaccc uguguccagc accgcgc--- ---ccgcuuu uaccagcuua cguauccuuu 3541 cuauuc---- ---------- ---------- ------ggcc uuuaccggcc acccacggga 3601 auauccucag cac------g u-uu-ucu-g -u-uuuuuc- ---------- ----acGC(- 3661 GAAA-)GCuu uGAGgu-uac aGUC|-U|C- AGGGGGGAGU AC--GU-UC( --GCAA-)GA 3721 GUG-AAACUU -AAAG--AAA -UUG|AC-G~ -~~-~~~~~- -~~~~-~~~~ ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --~-~~|-~~ 4021 ~~~~~~~~|~ ~~-~~~~~~~ ~~~~~~~-~~ ~~~~~--~~~ ~~~~~~~~~~ ~~[~~~-~~~ 4081 ~~~~~~~~~~ ~~-----~~~ ~~~(~~~~~~ ~-~)------ ~~~~~----- ~~~-~~~~~~ 4141 ~~~~~~~~~~ ~]~~~~~~~~ |~~~~~~~~~ ~~~~~(~~~~ )~~~~~~~~~ ~~~(~~~~)~ 4201 ~~~|~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ |~~~|~~~~~ ~~~|~~~~~- ~|~~~(~~~~ 4261 ~-)~~~~~~~ ~~~~(~~~~~ ~~)~~~~~~~ ~~-~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ 4321 ~~~~~~(~~~ ~~)[~~~~~~ ~~~~~~~~~~ ~--~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4381 ~~~--~~~~~ ~---~~~~~~ ~~~~~~(~~~ ~)~-~~~~~~ ~~~~~~~~~~ -~~~~~~~~~ 4441 --~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------~ ~~~~~~~~]~ ~~|~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~~~~(~~~~~ 5041 ~~~~~~~~)~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~--~~ ~~~------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ---~~~~~~~ ~|~~~~|~~~ 5221 ~~~~~~~~~~ ~~~~~~~~~~ ~-~~~~~~~~ ~~~~~--~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5281 ~~~(-~~~~~ ~~~~)[~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5341 ~~~~~~~~~~ ~~~~~~~~~( ~~~~~)~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5401 ~~~~~~~-~~ ~~~(~~~~~) ~~~~~~--~~ ~~~~~~~~~~ ~~~~~~]~~~ ~~~~~~~~~~ 5461 ~~~~~~~~~~ ~~~~~-~~-- ~~~~-~-~~~ ~~~~~~~~~( ~~~~~~~~)~ ~~~~~~~~~~ 5521 ~~~~~~-~~~ ~--~~~~~~~ ~~-~~~~~~~ (-~~~~~~~- )~~~~~~~-~ ~~~~~~~~~- 5581 ~~~~~~~~~~ ~~|~~~~-~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5641 ~~~-~~~~~- ~~~-~~~~~- ~~~~-~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ---------- 5701 -------(~~ ~~~~~~)~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~-~ 5761 ~~~~~~~~~~ -~~~~-|~~~ ~~~~~~~~~~ ~~-~~~~~-~ ~~~~~~~~~~ ~~~~~~~~~~ 5821 ~~~~~~~~~~ ~~-------- -----~~~-~ ~~~~~~(~~~ ~)~~~~~~~~ ~~~~~~~~~~ 5881 ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS L.brazil.4 5903 bp RNA RNA 11-JAN-191 DEFINITION Leishmania braziliensis subsp. was Leishmania brasiliensis. ACCESSION No information KEYWORDS No information. SOURCE Leishmania braziliensis subsp. was Leishmania brasiliensis. ORGANISM Leishmania braziliensis. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: M80292 LOCUS LEIRRSSB 883 bp ss-rRNA RNA 31-MAR-1992 DEFINITION Leishmania brasiliensis brasiliensis small subunit ribosomal RNA. ACCESSION M80292 KEYWORDS ribosomal RNA small subunit. SOURCE Leishmania brasiliensis (strain WR675, sub_species basiliensis) rRNA. ORGANISM Leishmania brasiliensis Eukaryota; Animalia; Protozoa; Sarcomastigophora; Mastigophora; Kinetoplastida; Trypanosomatina; Trypanosomatidae. REFERENCE 1 (bases 1 to 883) AUTHORS Ebeling,S.B., Kroon,C., Schoone,G.J. and Van Eys,G. TITLE Sequence analysis of small subunit ribosomal RNA genes and its use for detection and identification of Leishmania parasites JOURNAL Mol. Biochem. Parasitol. 51, 133-142 (1992) STANDARD full staff_entry FEATURES Location/Qualifiers rRNA 1..883 /note="This sequence is identical to the sequences of Leishmania brasiliensis guanensis and Leishmania brasiliensis panamensis." /product="small subunit ribosomal RNA" /gene="small subunit rRNA" BASE COUNT 204 a 205 c 243 g 231 t ORIGIN BASE COUNT 204 a 205 c 243 g 231 t 5020 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~(~~~)~~ ~~|~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~|~~~~~~~ |~~~~~~~(~ ~~~)[~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~]~~~~~~ 181 ~~~~~|~~~~ ~~|~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~<~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 ~>~~~~~~~~ ~~~~~~~~~( ~~~~~~~)~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~) 361 ~~~~~~~~~~ ~~~~~~~(~~ ~~)~~|~~~~ ~~<~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~)~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~)~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~|~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~)~~ ~~~~~~~~~~ 1081 ~~~~~~~~~> ~~~~~~~~~~ ~~~|~~~~~~ ~~|~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~(~~~~~~~ ~)~~~~~~~~ ~~|~~~~~~~ ~~~|~~~~~~ ~~~~~~|~~~ ~~~(~~~~~) 1201 ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~(~~~ ~~~~~~)~~~ ~~~~~~~~~~ (~~~~~)~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~( ~~~~~~~~)~ 1321 ~~~~~~~~~~ ~|~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~)~~~ ~~~~~~~~~~ 1381 |~~~~|~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~)~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~(~~~~ ~~~~~~~)~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~>~~~~ 1561 ~~~~|~~~~~ ~~~~~~~~~~ ~~~(~~~~~~ ~~~CC|GC-G GU-AA)UUCC AG-|CUCCAA 1621 A-AGCGUA|U AUUAA--UGC UGUUG-CUG| UUA--AAGGG UUCGUAGUUG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 aacug-uggg c-ugug-cag guuugu--uc cu-ggucguc ccgucc-aug ---------- 1801 ---------- -----uc-g- gauuug-gug -acccaggcc cuugca-gcc c--------- 1861 -----gugaa c-auucaaag aaacaagaaa cacgggagug guuccuuucc ugauu----- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ------ua-- -cgcauguca ugcaugccag ggggcguccg ugauuuuuua cugugacuaa 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- --------a- gaagcgu-ga cuaaagcagu 2161 cauuuga--- ---------- ---------- --cuugaauu agaa------ ---------- 2221 ---agcaugg gauaacaaag gagcag--cc ucuaggcuac cguuucggcu uuuguugguu 2281 uuaaaggucu auuggagauu auggagcugu gcgacaagcg cucucccauc gcaac----- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---uucgguu cggugugug- -------g-- ---------- -cgccuuugg 2521 --agggguuu agug-c-guc cggugcgggc uccggu---- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ------ucgu 2821 -cc-ggccgu -aa-cgccuu uucaacuca- cggccucuag g--aaugaag ga--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGU|AGUU ---------- 3001 --CGGGGGAG AA|--CGUAC UGGGGCG-UC -AGAG(GU-G AAA---)UUC U-UAGA-C-C 3061 GCACC-AAG- A-CGAACU-A CAGC(-GAAG )--GC|A--- UUCUUC-AA| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUA ---CCUUCCU -CAA-U|CA- A-GAACCAAA 3301 GUGUGGAGA- UCGAAGAUG( AUUA------ ---------- ---------- ---------- 3361 ---------- GAGAC)CA-U -UGUAG|UCC AC--ACU-GC AAACGAUGAC ACC|CA|--- 3421 -ugaauu-gg gga-u-c--- ----(----- ---------) uuaugggccg gccugcggca 3481 ggguuuaccc uguguccagc accgcgc--- ---ccgcuuu uaccagcuua cguauccuuu 3541 cuauuc---- ---------- ---------- ------ggcc uuuaccggcc acccacggga 3601 auauccucag cac------g u-uu-ucu-g -u-uuuuuc- ---------- ----acGC(- 3661 GAAA-)GCuu uGAGgu-uac aGUC|-U|C- AGGGGGGAGU AC--GU-UC( --GCAA-)GA 3721 GUG-AAACUU -AAAG--AAA -UUG|AC-G~ -~~-~~~~~- -~~~~-~~~~ ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --~-~~|-~~ 4021 ~~~~~~~~|~ ~~-~~~~~~~ ~~~~~~~-~~ ~~~~~--~~~ ~~~~~~~~~~ ~~[~~~-~~~ 4081 ~~~~~~~~~~ ~~-----~~~ ~~~(~~~~~~ ~-~)------ ~~~~~----- ~~~-~~~~~~ 4141 ~~~~~~~~~~ ~]~~~~~~~~ |~~~~~~~~~ ~~~~~(~~~~ )~~~~~~~~~ ~~~(~~~~)~ 4201 ~~~|~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ |~~~|~~~~~ ~~~|~~~~~- ~|~~~(~~~~ 4261 ~-)~~~~~~~ ~~~~(~~~~~ ~~)~~~~~~~ ~~-~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ 4321 ~~~~~~(~~~ ~~)[~~~~~~ ~~~~~~~~~~ ~--~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4381 ~~~--~~~~~ ~---~~~~~~ ~~~~~~(~~~ ~)~-~~~~~~ ~~~~~~~~~~ -~~~~~~~~~ 4441 --~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------~ ~~~~~~~~]~ ~~|~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~~~~(~~~~~ 5041 ~~~~~~~~)~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~--~~ ~~~------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ---~~~~~~~ ~|~~~~|~~~ 5221 ~~~~~~~~~~ ~~~~~~~~~~ ~-~~~~~~~~ ~~~~~--~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5281 ~~~(-~~~~~ ~~~~)[~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5341 ~~~~~~~~~~ ~~~~~~~~~( ~~~~~)~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5401 ~~~~~~~-~~ ~~~(~~~~~) ~~~~~~--~~ ~~~~~~~~~~ ~~~~~~]~~~ ~~~~~~~~~~ 5461 ~~~~~~~~~~ ~~~~~-~~-- ~~~~-~-~~~ ~~~~~~~~~( ~~~~~~~~)~ ~~~~~~~~~~ 5521 ~~~~~~-~~~ ~--~~~~~~~ ~~-~~~~~~~ (-~~~~~~~- )~~~~~~~-~ ~~~~~~~~~- 5581 ~~~~~~~~~~ ~~|~~~~-~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5641 ~~~-~~~~~- ~~~-~~~~~- ~~~~-~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ---------- 5701 -------(~~ ~~~~~~)~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~-~ 5761 ~~~~~~~~~~ -~~~~-|~~~ ~~~~~~~~~~ ~~-~~~~~-~ ~~~~~~~~~~ ~~~~~~~~~~ 5821 ~~~~~~~~~~ ~~-------- -----~~~-~ ~~~~~~(~~~ ~)~~~~~~~~ ~~~~~~~~~~ 5881 ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS L.chagasi 5903 bp RNA RNA 11-JAN-191 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: M81430 LOCUS LEIRRSSCH 882 bp ss-rRNA RNA 31-MAR-1992 DEFINITION Leishmania chagasi small subunit ribosomal RNA. ACCESSION M81430 KEYWORDS ribosomal RNA small subunit. SOURCE Leishmania chagasi rRNA. ORGANISM Leishmania chagasi Eukaryota; Animalia; Protozoa; Sarcomastigophora; Mastigophora; Kinetoplastida; Trypanosomatina; Trypanosomatidae. REFERENCE 1 (bases 1 to 882) AUTHORS Ebeling,S.B., Kroon,C., Schoone,G.J. and Van Eys,G. TITLE Sequence analysis of small subunit ribosomal RNA genes and its use for detection and identification of Leishmania parasites JOURNAL Mol. Biochem. Parasitol. 51, 133-142 (1992) STANDARD full staff_entry FEATURES Location/Qualifiers rRNA 1..882 /note="This sequence is identical to that of Leishmania donovani, strain NLB065, and Leishmania infantum." /product="small subunit ribosomal RNA" /gene="small subunit rRNA" BASE COUNT 207 a 203 c 239 g 233 t ORIGIN BASE COUNT 207 a 203 c 239 g 233 t 5021 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~(~~~)~~ ~~|~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~|~~~~~~~ |~~~~~~~(~ ~~~)[~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~]~~~~~~ 181 ~~~~~|~~~~ ~~|~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~<~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 ~>~~~~~~~~ ~~~~~~~~~( ~~~~~~~)~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~) 361 ~~~~~~~~~~ ~~~~~~~(~~ ~~)~~|~~~~ ~~<~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~)~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~)~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~|~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~)~~ ~~~~~~~~~~ 1081 ~~~~~~~~~> ~~~~~~~~~~ ~~~|~~~~~~ ~~|~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~(~~~~~~~ ~)~~~~~~~~ ~~|~~~~~~~ ~~~|~~~~~~ ~~~~~~|~~~ ~~~(~~~~~) 1201 ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~(~~~ ~~~~~~)~~~ ~~~~~~~~~~ (~~~~~)~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~( ~~~~~~~~)~ 1321 ~~~~~~~~~~ ~|~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~)~~~ ~~~~~~~~~~ 1381 |~~~~|~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~)~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~(~~~~ ~~~~~~~)~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~>~~~~ 1561 ~~~~|~~~~~ ~~~~~~~~~~ ~~~(~~~~~~ ~~~CC|GC-G GU-AA)UUCC AG-|CUCCAA 1621 A-AGCGUA|U AUUAA--UGC UGUUG-CUG| UUA--AAGGG UUCGUAGUUG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 aacug-uggg c-ugug-cag guuugu--uc cu-ggucguc ccgucc-aug ---------- 1801 ---------- -----uc-g- gauuug-gug -acccaggcc cuugca-gcc c--------- 1861 -----gugaa c-auucaaag aaacaagaaa cacgggagug guuccuuucc ugauu----- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ------ua-- -cgcauguca ugcaugccag ggggcguccg ugauuuuuua cugugacuaa 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- --------a- gaagcgu-ga cuaaagcagu 2161 cauuuga--- ---------- ---------- --cuugaauu agaa------ ---------- 2221 ---agcaugg gauaacaaag gagcag--cc ucuaggcuac cguuucggcu uuuguugguu 2281 uuaaaggucu auuggagauu auggagcugu gcgacaagug cuuucccauc gcaac----- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---cucgguu cggugugug- -------g-- ---------- -cgccuuug- 2521 --agggguuu agug-c-guc cgguacgagc uccggu---- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ------ucgu 2821 -cc-ggccgu -aa-cgccuu uucaacuca- cggccucuag g--aaugaag ga--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGU|AGUU ---------- 3001 --CGGGGGAG AA|--CGUAC UGGGGCG-UC -AGAG(GU-G AAA---)UUC U-UAGA-C-C 3061 GCACC-AAG- A-CGAACU-A CAGC(-GAAG )--GC|A--- UUCUUC-AA| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUA ---CCUUCCU -CAA-U|CA- A-GAACCAAA 3301 GUGUGGAGA- UCGAAGAUG( AUUA------ ---------- ---------- ---------- 3361 ---------- GAGAC)CA-U -UGUAG|UCC AC--ACU-GC AAACGAUGAC ACC|CA|--- 3421 -ugaauu-gg gga-u-c--- ----(----- ---------) uuaugggccg gccugcggca 3481 ggguuuaccc uguguccagc accgcgc--- ---ccgcuuu uaccaacuua cguaucuuuu 3541 cuauuc---- ---------- ---------- ------ggcc uuuaccggcc acccacggga 3601 auauccucag cac------g u-uu-ucu-g -u-uuuuuc- ---------- ----acGC(- 3661 GAAA-)GCuu uGAGgu-uac aGUC|-U|C- AGGGGGGAGU AC--GU-UC( --GCAA-)GA 3721 GUG-AAACUU -AAAG--AAA -UUG|AC-G~ -~~-~~~~~- -~~~~-~~~~ ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --~-~~|-~~ 4021 ~~~~~~~~|~ ~~-~~~~~~~ ~~~~~~~-~~ ~~~~~--~~~ ~~~~~~~~~~ ~~[~~~-~~~ 4081 ~~~~~~~~~~ ~~-----~~~ ~~~(~~~~~~ ~-~)------ ~~~~~----- ~~~-~~~~~~ 4141 ~~~~~~~~~~ ~]~~~~~~~~ |~~~~~~~~~ ~~~~~(~~~~ )~~~~~~~~~ ~~~(~~~~)~ 4201 ~~~|~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ |~~~|~~~~~ ~~~|~~~~~- ~|~~~(~~~~ 4261 ~-)~~~~~~~ ~~~~(~~~~~ ~~)~~~~~~~ ~~-~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ 4321 ~~~~~~(~~~ ~~)[~~~~~~ ~~~~~~~~~~ ~--~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4381 ~~~--~~~~~ ~---~~~~~~ ~~~~~~(~~~ ~)~-~~~~~~ ~~~~~~~~~~ -~~~~~~~~~ 4441 --~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------~ ~~~~~~~~]~ ~~|~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~~~~(~~~~~ 5041 ~~~~~~~~)~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~--~~ ~~~------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ---~~~~~~~ ~|~~~~|~~~ 5221 ~~~~~~~~~~ ~~~~~~~~~~ ~-~~~~~~~~ ~~~~~--~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5281 ~~~(-~~~~~ ~~~~)[~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5341 ~~~~~~~~~~ ~~~~~~~~~( ~~~~~)~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5401 ~~~~~~~-~~ ~~~(~~~~~) ~~~~~~--~~ ~~~~~~~~~~ ~~~~~~]~~~ ~~~~~~~~~~ 5461 ~~~~~~~~~~ ~~~~~-~~-- ~~~~-~-~~~ ~~~~~~~~~( ~~~~~~~~)~ ~~~~~~~~~~ 5521 ~~~~~~-~~~ ~--~~~~~~~ ~~-~~~~~~~ (-~~~~~~~- )~~~~~~~-~ ~~~~~~~~~- 5581 ~~~~~~~~~~ ~~|~~~~-~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5641 ~~~-~~~~~- ~~~-~~~~~- ~~~~-~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ---------- 5701 -------(~~ ~~~~~~)~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~-~ 5761 ~~~~~~~~~~ -~~~~-|~~~ ~~~~~~~~~~ ~~-~~~~~-~ ~~~~~~~~~~ ~~~~~~~~~~ 5821 ~~~~~~~~~~ ~~-------- -----~~~-~ ~~~~~~(~~~ ~)~~~~~~~~ ~~~~~~~~~~ 5881 ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS L.infantum 5903 bp RNA RNA 11-JAN-191 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: M81429 LOCUS LEIRRSSIN 882 bp ss-rRNA RNA 31-MAR-1992 DEFINITION Leishmania infantum small subunit ribosomal RNA. ACCESSION M81429 KEYWORDS ribosomal RNA small subunit. SOURCE Leishmania infantum rRNA. ORGANISM Leishmania infantum Eukaryota; Animalia; Protozoa; Sarcomastigophora; Mastigophora; Kinetoplastida; Trypanosomatina; Trypanosomatidae. REFERENCE 1 (bases 1 to 882) AUTHORS Ebeling,S.B., Kroon,C., Schoone,G.J. and Van Eys,G. TITLE Sequence analysis of small subunit ribosomal RNA genes and its use for detection and identification of Leishmania parasites JOURNAL Mol. Biochem. Parasitol. 51, 133-142 (1992) STANDARD full staff_entry FEATURES Location/Qualifiers rRNA 1..882 /note="This sequence is identical to that of Leishmania donovani, strain NLB065, and Leishmania chagasi." /product="small subunit ribosomal RNA" /gene="small subunit rRNA" BASE COUNT 207 a 203 c 239 g 233 t ORIGIN BASE COUNT 207 a 203 c 239 g 233 t 5021 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~(~~~)~~ ~~|~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~|~~~~~~~ |~~~~~~~(~ ~~~)[~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~]~~~~~~ 181 ~~~~~|~~~~ ~~|~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~<~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 ~>~~~~~~~~ ~~~~~~~~~( ~~~~~~~)~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~) 361 ~~~~~~~~~~ ~~~~~~~(~~ ~~)~~|~~~~ ~~<~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~)~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~)~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~|~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~)~~ ~~~~~~~~~~ 1081 ~~~~~~~~~> ~~~~~~~~~~ ~~~|~~~~~~ ~~|~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~(~~~~~~~ ~)~~~~~~~~ ~~|~~~~~~~ ~~~|~~~~~~ ~~~~~~|~~~ ~~~(~~~~~) 1201 ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~(~~~ ~~~~~~)~~~ ~~~~~~~~~~ (~~~~~)~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~( ~~~~~~~~)~ 1321 ~~~~~~~~~~ ~|~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~)~~~ ~~~~~~~~~~ 1381 |~~~~|~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~)~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~(~~~~ ~~~~~~~)~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~>~~~~ 1561 ~~~~|~~~~~ ~~~~~~~~~~ ~~~(~~~~~~ ~~~CC|GC-G GU-AA)UUCC AG-|CUCCAA 1621 A-AGCGUA|U AUUAA--UGC UGUUG-CUG| UUA--AAGGG UUCGUAGUUG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 aacug-uggg c-ugug-cag guuugu--uc cu-ggucguc ccgucc-aug ---------- 1801 ---------- -----uc-g- gauuug-gug -acccaggcc cuugca-gcc c--------- 1861 -----gugaa c-auucaaag aaacaagaaa cacgggagug guuccuuucc ugauu----- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ------ua-- -cgcauguca ugcaugccag ggggcguccg ugauuuuuua cugugacuaa 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- --------a- gaagcgu-ga cuaaagcagu 2161 cauuuga--- ---------- ---------- --cuugaauu agaa------ ---------- 2221 ---agcaugg gauaacaaag gagcag--cc ucuaggcuac cguuucggcu uuuguugguu 2281 uuaaaggucu auuggagauu auggagcugu gcgacaagug cuuucccauc gcaac----- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---cucgguu cggugugug- -------g-- ---------- -cgccuuug- 2521 --agggguuu agug-c-guc cgguacgagc uccggu---- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ------ucgu 2821 -cc-ggccgu -aa-cgccuu uucaacuca- cggccucuag g--aaugaag ga--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGU|AGUU ---------- 3001 --CGGGGGAG AA|--CGUAC UGGGGCG-UC -AGAG(GU-G AAA---)UUC U-UAGA-C-C 3061 GCACC-AAG- A-CGAACU-A CAGC(-GAAG )--GC|A--- UUCUUC-AA| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUA ---CCUUCCU -CAA-U|CA- A-GAACCAAA 3301 GUGUGGAGA- UCGAAGAUG( AUUA------ ---------- ---------- ---------- 3361 ---------- GAGAC)CA-U -UGUAG|UCC AC--ACU-GC AAACGAUGAC ACC|CA|--- 3421 -ugaauu-gg gga-u-c--- ----(----- ---------) uuaugggccg gccugcggca 3481 ggguuuaccc uguguccagc accgcgc--- ---ccgcuuu uaccaacuua cguaucuuuu 3541 cuauuc---- ---------- ---------- ------ggcc uuuaccggcc acccacggga 3601 auauccucag cac------g u-uu-ucu-g -u-uuuuuc- ---------- ----acGC(- 3661 GAAA-)GCuu uGAGgu-uac aGUC|-U|C- AGGGGGGAGU AC--GU-UC( --GCAA-)GA 3721 GUG-AAACUU -AAAG--AAA -UUG|AC-G~ -~~-~~~~~- -~~~~-~~~~ ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --~-~~|-~~ 4021 ~~~~~~~~|~ ~~-~~~~~~~ ~~~~~~~-~~ ~~~~~--~~~ ~~~~~~~~~~ ~~[~~~-~~~ 4081 ~~~~~~~~~~ ~~-----~~~ ~~~(~~~~~~ ~-~)------ ~~~~~----- ~~~-~~~~~~ 4141 ~~~~~~~~~~ ~]~~~~~~~~ |~~~~~~~~~ ~~~~~(~~~~ )~~~~~~~~~ ~~~(~~~~)~ 4201 ~~~|~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ |~~~|~~~~~ ~~~|~~~~~- ~|~~~(~~~~ 4261 ~-)~~~~~~~ ~~~~(~~~~~ ~~)~~~~~~~ ~~-~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ 4321 ~~~~~~(~~~ ~~)[~~~~~~ ~~~~~~~~~~ ~--~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4381 ~~~--~~~~~ ~---~~~~~~ ~~~~~~(~~~ ~)~-~~~~~~ ~~~~~~~~~~ -~~~~~~~~~ 4441 --~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------~ ~~~~~~~~]~ ~~|~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~~~~(~~~~~ 5041 ~~~~~~~~)~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~--~~ ~~~------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ---~~~~~~~ ~|~~~~|~~~ 5221 ~~~~~~~~~~ ~~~~~~~~~~ ~-~~~~~~~~ ~~~~~--~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5281 ~~~(-~~~~~ ~~~~)[~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5341 ~~~~~~~~~~ ~~~~~~~~~( ~~~~~)~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5401 ~~~~~~~-~~ ~~~(~~~~~) ~~~~~~--~~ ~~~~~~~~~~ ~~~~~~]~~~ ~~~~~~~~~~ 5461 ~~~~~~~~~~ ~~~~~-~~-- ~~~~-~-~~~ ~~~~~~~~~( ~~~~~~~~)~ ~~~~~~~~~~ 5521 ~~~~~~-~~~ ~--~~~~~~~ ~~-~~~~~~~ (-~~~~~~~- )~~~~~~~-~ ~~~~~~~~~- 5581 ~~~~~~~~~~ ~~|~~~~-~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5641 ~~~-~~~~~- ~~~-~~~~~- ~~~~-~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ---------- 5701 -------(~~ ~~~~~~)~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~-~ 5761 ~~~~~~~~~~ -~~~~-|~~~ ~~~~~~~~~~ ~~-~~~~~-~ ~~~~~~~~~~ ~~~~~~~~~~ 5821 ~~~~~~~~~~ ~~-------- -----~~~-~ ~~~~~~(~~~ ~)~~~~~~~~ ~~~~~~~~~~ 5881 ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS L.major.1 5903 bp RNA RNA 11-JAN-191 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: X53915 LOCUS LEISSRRNB 2137 bp ds-DNA INV 22-MAY-1992 DEFINITION L.major small subunit ribosomal RNA gene ACCESSION X53915 KEYWORDS small subunit ribosomal RNA. SOURCE Leishmania major DNA. ORGANISM Leishmania major Eukaryota; Animalia; Protozoa; Sarcomastigophora; Mastigophora; Kinetoplastida; Trypanosomatina; Trypanosomatidae. REFERENCE 1 (bases 1 to 2137) AUTHORS Nelson,K. and Beverley,S.M. TITLE Evolution of nuclear small subunit ribosomal RNAs in kinetoplastid protozoans: New perspectives on the evolution of vertebrate parasitism JOURNAL Unpublished (1992) STANDARD full automatic COMMENT *source: strain=LT252; *source: stage=promastigote; From EMBL entry LMSSRRNA; dated 27-APR-1992. FEATURES Location/Qualifiers misc_feature 1..2137 /note="transcribed region" /gene="nuclear small subunit ribosomal RNA" BASE COUNT 536 a 494 c 570 g 537 t ORIGIN BASE COUNT 536 a 494 c 570 g 537 t 3766 others ORIGIN 1 |~~~~~~~~~ ~~~~~nnnnn nnn(nnn)nn nn|nnnnnU- A-GUCA-UAU --GCUUGUUU 61 CAAG|-GACU UA-GCCAUGC A-UGCCU-CA GA|------- |-------(- ---)[----- 121 ---------- --------au cacugc--au ---------- -uu-g-cag- gaa]------ 181 -----|---U CU|G-CGCA- UGGCU-CAUU ACAu-caga- cgu-aauc-- ----ugccgc 241 aaaa<----- ---------- ---------- --aucuugcg guuu-ccgca a--------- 301 ->AAUUGG-A UAACUUGGC( -G-AAAC)GC CAAGC-UAA- UACAUG---- ----(----) 361 ---------- -------(-- --)--|---- -- -ucuuuugac -ga|acaacu gc|--CCU-A UCA--GCUGG U-GAUGGCC- 1141 GU(-GUAGUG G)ACU-GCCA U-|GGCGU-U GAC|GGGA-G --CGGG|GGA -U-(UAGG-) 1201 GUU-CGAUU- CCG|GAGAGG G-AGCC(U-G AGAAAU)AGC UACC-ACUUC (UACG-)GAG 1261 -GGCAGC-A- ---------| GGC-GC-GC- AAAUU-GCCC -AAUGUC-A( aaacaaaa)C 1321 GAUG-A-GGC -|A|GCGAAA AGAA-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AG AGUUGUCAG- --UCC(---- ---auuu)GG A--UU-GUCA --UUUCAAUG 1501 ---GGGGAUA ----UUUAAA -CCCA--UCC A-----AU-A U-CGA-GUAA C---->AAUU 1561 GGAG|GA-CA A-GU-C-UGG U-G(CCA-GC -ACCC|GC-G GU-AA)UUCC AG-|CUCCAA 1621 A-AGCGUA|U AUUAA--UGC UGUUG-CUG| UUA--AAGGG UUCGUAGUUG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 aacug-uggg c-ugug-cag guuugu--uc cu-ggucguc ccgucc-aug ---------- 1801 ---------- -----uc-g- gauuug-gug -acccaggcc cuugca-gcc c--------- 1861 -----gugaa c-auucaaag aaacaagaaa cacgggagug guuccuuucc ugauu----- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ------ua-- -cgcauguca ugcaugccag ggggcguccg ugauuuuuua cugugacuaa 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- --------a- gaagcgu-ga cuaaagcagu 2161 cauuuga--- ---------- ---------- --cuugaauu agaa------ ---------- 2221 ---agcaugg gauaacaaag gagcag--cc ucuaggcuac cguuucggcu uuuguugguu 2281 uuaaaggucu auuggagauu auggagcugu gcgacaagug cuuucccauc gcaac----- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---uucgguu cggugugug- -------g-- ---------- -cgccuuug- 2521 --agggguuu agug-c-guc cggugcgagc uccggu---- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ------ucgu 2821 -cc-ggccgu -aa-cgccuu uucaacuca- cggccucuag g--aaugaag ga--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGU|AGUU ---------- 3001 --CGGGGGAG AA|--CGUAC UGGGGCG-UC -AGAG(GU-G AAA---)UUC U-UAGA-C-C 3061 GCACC-AAG- A-CGAACU-A CAGC(-GAAG )--GC|A--- UUCUUC-AA| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUA ---CCUUCCU -CAA-U|CA- A-GAACCAAA 3301 GUGUGGAGA- UCGAAGAUG( AUUA------ ---------- ---------- ---------- 3361 ---------- GAGAC)CA-U -UGUAG|UCC AC--ACU-GC AAACGAUGAC ACC|CA|--- 3421 -ugaauu-gg gga-u-c--- ----(----- ---------) uuaugggccg gccugcggca 3481 ggguuuaccc uguguc-agc accgcgc--- ---ccgcuuu uaccaacuua cguaucuuuu 3541 cuauuc---- ---------- ---------- ------ggcc uuuaccggcc acccacggga 3601 auauccucag cac------g u-uu-ucu-g -u-uuuuuc- ---------- ----acGC(- 3661 GAAA-)GCuu uGAGgu-uac aGUC|-U|C- AGGGGGGAGU AC--GU-UC( --GCAA-)GA 3721 GUG-AAACUU -AAAG--AAA -UUG|AC-GG -AA-UGGCA- -CCAC-AAGA ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --C-GU|-GG 4021 AGCGUGCG|G UU-UAAUUUG (ACUCAA-CA )CGGG--GAA CUUUACCAGA UC[cgg-aca 4081 ggau-gagga uu-----gac aga(uugagu g-u)------ ucuuu----- cuc-gauu-c 4141 ccugaa---- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU-G-CAUG |GCC|GC-UU UUG|GUCGG- U|GGA(-GUG 4261 A-)UUUGUU- -UGG(UU-GA UU)CCGUCA- AC-GGACGAG AUCCA-AG|- ---------- 4321 ------(--- --)[CUGCCC AG--uagaau u--caga-au ugcccauaga auag-caa-a 4381 -----cucau c---ggcggg u-----(uuu -)-------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ------accc aacggugggc cg-------c auucgguc-- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ----gaauu- cu-------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------U CUCUGCGG]- --|------- ---------- GAuu-ccu-u ug-u(----- 5041 -aauugc-)a caag-g-ugA AAUU-UUGGG CAACAG--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UG A|UGCU|CC- 5221 U-CAA-UGUU CUGG-GCGAC A-CGCGCACU ACAAU--G-U CAGUG----- ---------- 5281 ---(------ ----)[agaa caagaaa--- ---------- ---------- ---------- 5341 ---------- ---aacgac( -uuuu)gucg a--------- ---------- ---------- 5401 accuacu-ug auc(aaaa-) gagug----g ggaaaccccg gaauca]--- ---------- 5461 -------cau aga-c-c--- cACU-U-GGG ACCGAGGAU( UGCAAUUA)U UGGUCGCGCA 5521 ACGAGG-AAU G--UCUCGUA GG-CGC-AGC (-UCAUCAA- )ACUGU-G-C -CGAUUACG- 5581 U-CCCUGCCA UU|UGUA-CA CACCGCCCGU CGUUGU-U-U CC-GAU--GA UG-GUGca-- 5641 aua-cagg-- uga-ucgga- cagg-cgg-- -ug------- ---------- ---------- 5701 -------(uu u-----)--- ---------- ---------- ---------- ---------- 5761 uauccg-ccc -gaaa-|guu -caccgauau uu-cuu-c-a auag-AGGAA GC-AAnn-n- 5821 nnnnnnnnnn nn-------- -----n-n-n nnnnnn(nnn n)nnnnnnnn nnnnnnn--- 5881 --nnn~~~~~ ~~~~~~~~|| ||| // LOCUS L.major.2 5903 bp RNA RNA 11-JAN-191 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: M81427 LOCUS LEIRRSSMJ 882 bp ss-rRNA RNA 31-MAR-1992 DEFINITION Leishmania major small subunit ribosomal RNA. ACCESSION M81427 KEYWORDS ribosomal RNA small subunit. SOURCE Leishmania major (strain NLB765) rRNA. ORGANISM Leishmania major Eukaryota; Animalia; Protozoa; Sarcomastigophora; Mastigophora; Kinetoplastida; Trypanosomatina; Trypanosomatidae. REFERENCE 1 (bases 1 to 882) AUTHORS Ebeling,S.B., Kroon,C., Schoone,G.J. and Van Eys,G. TITLE Sequence analysis of small subunit ribosomal RNA genes and its use for detection and identification of Leishmania parasites JOURNAL Mol. Biochem. Parasitol. 51, 133-142 (1992) STANDARD full staff_entry FEATURES Location/Qualifiers rRNA 1..882 /note="This sequence is identical to that of Leishmania tropica, strain NLB162, and Leishmaniaaethiopia, starin NLB161." /product="small subunit ribosomal RNA" /gene="small subunit rRNA" BASE COUNT 205 a 204 c 240 g 233 t ORIGIN BASE COUNT 205 a 204 c 240 g 233 t 5021 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~(~~~)~~ ~~|~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~|~~~~~~~ |~~~~~~~(~ ~~~)[~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~]~~~~~~ 181 ~~~~~|~~~~ ~~|~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~<~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 ~>~~~~~~~~ ~~~~~~~~~( ~~~~~~~)~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~) 361 ~~~~~~~~~~ ~~~~~~~(~~ ~~)~~|~~~~ ~~<~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~)~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~)~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~|~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~)~~ ~~~~~~~~~~ 1081 ~~~~~~~~~> ~~~~~~~~~~ ~~~|~~~~~~ ~~|~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~(~~~~~~~ ~)~~~~~~~~ ~~|~~~~~~~ ~~~|~~~~~~ ~~~~~~|~~~ ~~~(~~~~~) 1201 ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~(~~~ ~~~~~~)~~~ ~~~~~~~~~~ (~~~~~)~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~( ~~~~~~~~)~ 1321 ~~~~~~~~~~ ~|~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~)~~~ ~~~~~~~~~~ 1381 |~~~~|~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~)~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~(~~~~ ~~~~~~~)~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~>~~~~ 1561 ~~~~|~~~~~ ~~~~~~~~~~ ~~~(~~~~~~ ~~~CC|GC-G GU-AA)UUCC AG-|CUCCAA 1621 A-AGCGUA|U AUUAA--UGC UGUUG-CUG| UUA--AAGGG UUCGUAGUUG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 aacug-uggg c-ugug-cag guuugu--uc cu-ggucguc ccgucc-aug ---------- 1801 ---------- -----uc-g- gauuug-gug -acccaggcc cuugca-gcc c--------- 1861 -----gugaa c-auucaaag aaacaagaaa cacgggagug guuccuuucc ugauu----- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ------ua-- -cgcauguca ugcaugccag ggggcguccg ugauuuuuua cugugacuaa 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- --------a- gaagcgu-ga cuaaagcagu 2161 cauuuga--- ---------- ---------- --cuugaauu agaa------ ---------- 2221 ---agcaugg gauaacaaag gagcag--cc ucuaggcuac cguuucggcu uuuguugguu 2281 uuaaaggucu auuggagauu auggagcugu gcgacaagug cuuucccauc gcaac----- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---uucgguu cggugugug- -------g-- ---------- -cgccuuug- 2521 --agggguuu agug-c-guc cggugcgagc uccggu---- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ------ucgu 2821 -cc-ggccgu -aa-cgccuu uucaacuca- cggccucuag g--aaugaag ga--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGU|AGUU ---------- 3001 --CGGGGGAG AA|--CGUAC UGGGGCG-UC -AGAG(GU-G AAA---)UUC U-UAGA-C-C 3061 GCACC-AAG- A-CGAACU-A CAGC(-GAAG )--GC|A--- UUCUUC-AA| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUA ---CCUUCCU -CAA-U|CA- A-GAACCAAA 3301 GUGUGGAGA- UCGAAGAUG( AUUA------ ---------- ---------- ---------- 3361 ---------- GAGAC)CA-U -UGUAG|UCC AC--ACU-GC AAACGAUGAC ACC|CA|--- 3421 -ugaauu-gg gga-u-c--- ----(----- ---------) uuaugggccg gccugcggca 3481 ggguuuaccc uguguccagc accgcgc--- ---ccgcuuu uaccaccuua cguauccuuu 3541 cuauuc---- ---------- ---------- ------ggcc uuuaccggcc acccacggga 3601 auauccucag cac------g u-uu-ucu-g -u-uuuuuc- ---------- ----acGC(- 3661 GAAA-)GCuu uGAGgu-uac aGUC|-U|C- AGGGGGGAGU AC--GU-UC( --GCAA-)GA 3721 GUG-AAACUU -AAAG--AAA -UUG|AC-G~ -~~-~~~~~- -~~~~-~~~~ ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --~-~~|-~~ 4021 ~~~~~~~~|~ ~~-~~~~~~~ ~~~~~~~-~~ ~~~~~--~~~ ~~~~~~~~~~ ~~[~~~-~~~ 4081 ~~~~~~~~~~ ~~-----~~~ ~~~(~~~~~~ ~-~)------ ~~~~~----- ~~~-~~~~~~ 4141 ~~~~~~~~~~ ~]~~~~~~~~ |~~~~~~~~~ ~~~~~(~~~~ )~~~~~~~~~ ~~~(~~~~)~ 4201 ~~~|~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ |~~~|~~~~~ ~~~|~~~~~- ~|~~~(~~~~ 4261 ~-)~~~~~~~ ~~~~(~~~~~ ~~)~~~~~~~ ~~-~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ 4321 ~~~~~~(~~~ ~~)[~~~~~~ ~~~~~~~~~~ ~--~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4381 ~~~--~~~~~ ~---~~~~~~ ~~~~~~(~~~ ~)~-~~~~~~ ~~~~~~~~~~ -~~~~~~~~~ 4441 --~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------~ ~~~~~~~~]~ ~~|~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~~~~(~~~~~ 5041 ~~~~~~~~)~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~--~~ ~~~------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ---~~~~~~~ ~|~~~~|~~~ 5221 ~~~~~~~~~~ ~~~~~~~~~~ ~-~~~~~~~~ ~~~~~--~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5281 ~~~(-~~~~~ ~~~~)[~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5341 ~~~~~~~~~~ ~~~~~~~~~( ~~~~~)~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5401 ~~~~~~~-~~ ~~~(~~~~~) ~~~~~~--~~ ~~~~~~~~~~ ~~~~~~]~~~ ~~~~~~~~~~ 5461 ~~~~~~~~~~ ~~~~~-~~-- ~~~~-~-~~~ ~~~~~~~~~( ~~~~~~~~)~ ~~~~~~~~~~ 5521 ~~~~~~-~~~ ~--~~~~~~~ ~~-~~~~~~~ (-~~~~~~~- )~~~~~~~-~ ~~~~~~~~~- 5581 ~~~~~~~~~~ ~~|~~~~-~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5641 ~~~-~~~~~- ~~~-~~~~~- ~~~~-~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ---------- 5701 -------(~~ ~~~~~~)~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~-~ 5761 ~~~~~~~~~~ -~~~~-|~~~ ~~~~~~~~~~ ~~-~~~~~-~ ~~~~~~~~~~ ~~~~~~~~~~ 5821 ~~~~~~~~~~ ~~-------- -----~~~-~ ~~~~~~(~~~ ~)~~~~~~~~ ~~~~~~~~~~ 5881 ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS L.mexica.1 5903 bp RNA RNA 11-JAN-191 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: M80293 LOCUS LEIRRSSM 883 bp ss-rRNA RNA 31-MAR-1992 DEFINITION Leishmania mexicana amazonensis small subunit ribosomal RNA. ACCESSION M80293 KEYWORDS ribosomal RNA small subunit. SOURCE Leishmania mexicana (strain LTB16, sub_species amazonensis) rRNA. ORGANISM Leishmania mexicana Eukaryota; Animalia; Protozoa; Sarcomastigophora; Mastigophora; Kinetoplastida; Trypanosomatina; Trypanosomatidae. REFERENCE 1 (bases 1 to 883) AUTHORS Ebeling,S.B., Kroon,C., Schoone,G.J. and Van Eys,G. TITLE Sequence analysis of small subunit ribosomal RNA genes and its use for detection and identification of Leishmania parasites JOURNAL Mol. Biochem. Parasitol. 51, 133-142 (1992) STANDARD full staff_entry FEATURES Location/Qualifiers rRNA 1..883 /note="This sequence is identical to that of Leismania mexicana mexicana" /product="small subunit ribosomal RNA" /gene="small subunit rRNA" BASE COUNT 205 a 204 c 241 g 233 t ORIGIN BASE COUNT 205 a 204 c 241 g 233 t 5020 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~(~~~)~~ ~~|~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~|~~~~~~~ |~~~~~~~(~ ~~~)[~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~]~~~~~~ 181 ~~~~~|~~~~ ~~|~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~<~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 ~>~~~~~~~~ ~~~~~~~~~( ~~~~~~~)~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~) 361 ~~~~~~~~~~ ~~~~~~~(~~ ~~)~~|~~~~ ~~<~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~)~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~)~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~|~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~)~~ ~~~~~~~~~~ 1081 ~~~~~~~~~> ~~~~~~~~~~ ~~~|~~~~~~ ~~|~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~(~~~~~~~ ~)~~~~~~~~ ~~|~~~~~~~ ~~~|~~~~~~ ~~~~~~|~~~ ~~~(~~~~~) 1201 ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~(~~~ ~~~~~~)~~~ ~~~~~~~~~~ (~~~~~)~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~( ~~~~~~~~)~ 1321 ~~~~~~~~~~ ~|~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~)~~~ ~~~~~~~~~~ 1381 |~~~~|~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~)~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~(~~~~ ~~~~~~~)~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~>~~~~ 1561 ~~~~|~~~~~ ~~~~~~~~~~ ~~~(~~~~~~ ~~~CC|GC-G GU-AA)UUCC AG-|CUCCAA 1621 A-AGCGUA|U AUUAA--UGC UGUUG-CUG| UUA--AAGGG UUCGUAGUUG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 aacug-uggg c-ugug-cag guuugu--uc cu-ggucguc ccgucc-aug ---------- 1801 ---------- -----uc-g- gauuug-gug -acccaggcc cuugca-gcc c--------- 1861 -----gugaa c-auucaaag aaacaagaaa cacgggagug guuccuuucc ugauu----- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ------ua-- -cgcauguca ugcaugccag ggggcguccg ugauuuuuua cugugacuaa 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- --------a- gaagcgu-ga cuaaagcagu 2161 cauuuga--- ---------- ---------- --cuugaauu agaa------ ---------- 2221 ---agcaugg gauaacaaag gagcag--cc ucuaggcuac cguuucggcu uuuguugguu 2281 uuaaaggucu auuggagauu auggagcugu gcgacaagug cuuucccauc gcaac----- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---uucgguu cggugugug- -------g-- ---------- -cgccuuugg 2521 --agggguuu agug-c-guc cggugcgagc uccggu---- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ------ucgu 2821 -cc-ggccgu -aa-cgccuu uucaacuca- cggccucuag g--aaugaag ga--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGU|AGUU ---------- 3001 --CGGGGGAG AA|--CGUAC UGGGGCG-UC -AGAG(GU-G AAA---)UUC U-UAGA-C-C 3061 GCACC-AAG- A-CGAACU-A CAGC(-GAAG )--GC|A--- UUCUUC-AA| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUA ---CCUUCCU -CAA-U|CA- A-GAACCAAA 3301 GUGUGGAGA- UCGAAGAUG( AUUA------ ---------- ---------- ---------- 3361 ---------- GAGAC)CA-U -UGUAG|UCC AC--ACU-GC AAACGAUGAC ACC|CA|--- 3421 -ugaauu-gg gga-u-c--- ----(----- ---------) uuaugggccg gccugcggca 3481 ggguuuaccc uguguccagc accgcgc--- ---ccgcuuu uaccaccuua cguauccuuu 3541 cuauuc---- ---------- ---------- ------ggcc uuuaccggcc acccacggga 3601 auauccucag cac------g u-uu-ucu-g -u-uuuuuc- ---------- ----acGC(- 3661 GAAA-)GCuu uGAGgu-uac aGUC|-U|C- AGGGGGGAGU AC--GU-UC( --GCAA-)GA 3721 GUG-AAACUU -AAAG--AAA -UUG|AC-G~ -~~-~~~~~- -~~~~-~~~~ ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --~-~~|-~~ 4021 ~~~~~~~~|~ ~~-~~~~~~~ ~~~~~~~-~~ ~~~~~--~~~ ~~~~~~~~~~ ~~[~~~-~~~ 4081 ~~~~~~~~~~ ~~-----~~~ ~~~(~~~~~~ ~-~)------ ~~~~~----- ~~~-~~~~~~ 4141 ~~~~~~~~~~ ~]~~~~~~~~ |~~~~~~~~~ ~~~~~(~~~~ )~~~~~~~~~ ~~~(~~~~)~ 4201 ~~~|~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ |~~~|~~~~~ ~~~|~~~~~- ~|~~~(~~~~ 4261 ~-)~~~~~~~ ~~~~(~~~~~ ~~)~~~~~~~ ~~-~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ 4321 ~~~~~~(~~~ ~~)[~~~~~~ ~~~~~~~~~~ ~--~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4381 ~~~--~~~~~ ~---~~~~~~ ~~~~~~(~~~ ~)~-~~~~~~ ~~~~~~~~~~ -~~~~~~~~~ 4441 --~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------~ ~~~~~~~~]~ ~~|~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~~~~(~~~~~ 5041 ~~~~~~~~)~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~--~~ ~~~------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ---~~~~~~~ ~|~~~~|~~~ 5221 ~~~~~~~~~~ ~~~~~~~~~~ ~-~~~~~~~~ ~~~~~--~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5281 ~~~(-~~~~~ ~~~~)[~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5341 ~~~~~~~~~~ ~~~~~~~~~( ~~~~~)~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5401 ~~~~~~~-~~ ~~~(~~~~~) ~~~~~~--~~ ~~~~~~~~~~ ~~~~~~]~~~ ~~~~~~~~~~ 5461 ~~~~~~~~~~ ~~~~~-~~-- ~~~~-~-~~~ ~~~~~~~~~( ~~~~~~~~)~ ~~~~~~~~~~ 5521 ~~~~~~-~~~ ~--~~~~~~~ ~~-~~~~~~~ (-~~~~~~~- )~~~~~~~-~ ~~~~~~~~~- 5581 ~~~~~~~~~~ ~~|~~~~-~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5641 ~~~-~~~~~- ~~~-~~~~~- ~~~~-~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ---------- 5701 -------(~~ ~~~~~~)~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~-~ 5761 ~~~~~~~~~~ -~~~~-|~~~ ~~~~~~~~~~ ~~-~~~~~-~ ~~~~~~~~~~ ~~~~~~~~~~ 5821 ~~~~~~~~~~ ~~-------- -----~~~-~ ~~~~~~(~~~ ~)~~~~~~~~ ~~~~~~~~~~ 5881 ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS L.mexica.2 5903 bp RNA RNA 11-JAN-191 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: M81422 LOCUS LEIRRSSMA 883 bp ss-rRNA RNA 31-MAR-1992 DEFINITION Leishmania mexicana mexicana small subunit ribosomal RNA ACCESSION M81422 KEYWORDS ribosomal RNA small subunit. SOURCE Leishmania mexicana (sub_species mexicana) rRNA. ORGANISM Leishmania mexicana Eukaryota; Animalia; Protozoa; Sarcomastigophora; Mastigophora; Kinetoplastida; Trypanosomatina; Trypanosomatidae. REFERENCE 1 (bases 1 to 883) AUTHORS Ebeling,S.B., Kroon,C., Schoone,G.J. and Van Eys,G. TITLE Sequence analysis of small subunit ribosomal RNA genes and its use for detection and identification of Leishmania parasites JOURNAL Mol. Biochem. Parasitol. 51, 133-142 (1992) STANDARD full staff_entry FEATURES Location/Qualifiers rRNA 1..883 /note="This sequence is identical to that of Leishmania mexicana amazonensis, strain LTB16." /product="small subunit ribosomal RNA" /gene="small subunit rRNA" BASE COUNT 205 a 204 c 241 g 233 t ORIGIN BASE COUNT 205 a 204 c 241 g 233 t 5020 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~(~~~)~~ ~~|~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~|~~~~~~~ |~~~~~~~(~ ~~~)[~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~]~~~~~~ 181 ~~~~~|~~~~ ~~|~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~<~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 ~>~~~~~~~~ ~~~~~~~~~( ~~~~~~~)~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~) 361 ~~~~~~~~~~ ~~~~~~~(~~ ~~)~~|~~~~ ~~<~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~)~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~)~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~|~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~)~~ ~~~~~~~~~~ 1081 ~~~~~~~~~> ~~~~~~~~~~ ~~~|~~~~~~ ~~|~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~(~~~~~~~ ~)~~~~~~~~ ~~|~~~~~~~ ~~~|~~~~~~ ~~~~~~|~~~ ~~~(~~~~~) 1201 ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~(~~~ ~~~~~~)~~~ ~~~~~~~~~~ (~~~~~)~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~( ~~~~~~~~)~ 1321 ~~~~~~~~~~ ~|~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~)~~~ ~~~~~~~~~~ 1381 |~~~~|~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~)~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~(~~~~ ~~~~~~~)~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~>~~~~ 1561 ~~~~|~~~~~ ~~~~~~~~~~ ~~~(~~~~~~ ~~~CC|GC-G GU-AA)UUCC AG-|CUCCAA 1621 A-AGCGUA|U AUUAA--UGC UGUUG-CUG| UUA--AAGGG UUCGUAGUUG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 aacug-uggg c-ugug-cag guuugu--uc cu-ggucguc ccgucc-aug ---------- 1801 ---------- -----uc-g- gauuug-gug -acccaggcc cuugca-gcc c--------- 1861 -----gugaa c-auucaaag aaacaagaaa cacgggagug guuccuuucc ugauu----- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ------ua-- -cgcauguca ugcaugccag ggggcguccg ugauuuuuua cugugacuaa 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- --------a- gaagcgu-ga cuaaagcagu 2161 cauuuga--- ---------- ---------- --cuugaauu agaa------ ---------- 2221 ---agcaugg gauaacaaag gagcag--cc ucuaggcuac cguuucggcu uuuguugguu 2281 uuaaaggucu auuggagauu auggagcugu gcgacaagug cuuucccauc gcaac----- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---uucgguu cggugugug- -------g-- ---------- -cgccuuugg 2521 --agggguuu agug-c-guc cggugcgagc uccggu---- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ------ucgu 2821 -cc-ggccgu -aa-cgccuu uucaacuca- cggccucuag g--aaugaag ga--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGU|AGUU ---------- 3001 --CGGGGGAG AA|--CGUAC UGGGGCG-UC -AGAG(GU-G AAA---)UUC U-UAGA-C-C 3061 GCACC-AAG- A-CGAACU-A CAGC(-GAAG )--GC|A--- UUCUUC-AA| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUA ---CCUUCCU -CAA-U|CA- A-GAACCAAA 3301 GUGUGGAGA- UCGAAGAUG( AUUA------ ---------- ---------- ---------- 3361 ---------- GAGAC)CA-U -UGUAG|UCC AC--ACU-GC AAACGAUGAC ACC|CA|--- 3421 -ugaauu-gg gga-u-c--- ----(----- ---------) uuaugggccg gccugcggca 3481 ggguuuaccc uguguccagc accgcgc--- ---ccgcuuu uaccaccuua cguauccuuu 3541 cuauuc---- ---------- ---------- ------ggcc uuuaccggcc acccacggga 3601 auauccucag cac------g u-uu-ucu-g -u-uuuuuc- ---------- ----acGC(- 3661 GAAA-)GCuu uGAGgu-uac aGUC|-U|C- AGGGGGGAGU AC--GU-UC( --GCAA-)GA 3721 GUG-AAACUU -AAAG--AAA -UUG|AC-G~ -~~-~~~~~- -~~~~-~~~~ ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --~-~~|-~~ 4021 ~~~~~~~~|~ ~~-~~~~~~~ ~~~~~~~-~~ ~~~~~--~~~ ~~~~~~~~~~ ~~[~~~-~~~ 4081 ~~~~~~~~~~ ~~-----~~~ ~~~(~~~~~~ ~-~)------ ~~~~~----- ~~~-~~~~~~ 4141 ~~~~~~~~~~ ~]~~~~~~~~ |~~~~~~~~~ ~~~~~(~~~~ )~~~~~~~~~ ~~~(~~~~)~ 4201 ~~~|~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ |~~~|~~~~~ ~~~|~~~~~- ~|~~~(~~~~ 4261 ~-)~~~~~~~ ~~~~(~~~~~ ~~)~~~~~~~ ~~-~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ 4321 ~~~~~~(~~~ ~~)[~~~~~~ ~~~~~~~~~~ ~--~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4381 ~~~--~~~~~ ~---~~~~~~ ~~~~~~(~~~ ~)~-~~~~~~ ~~~~~~~~~~ -~~~~~~~~~ 4441 --~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------~ ~~~~~~~~]~ ~~|~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~~~~(~~~~~ 5041 ~~~~~~~~)~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~--~~ ~~~------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ---~~~~~~~ ~|~~~~|~~~ 5221 ~~~~~~~~~~ ~~~~~~~~~~ ~-~~~~~~~~ ~~~~~--~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5281 ~~~(-~~~~~ ~~~~)[~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5341 ~~~~~~~~~~ ~~~~~~~~~( ~~~~~)~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5401 ~~~~~~~-~~ ~~~(~~~~~) ~~~~~~--~~ ~~~~~~~~~~ ~~~~~~]~~~ ~~~~~~~~~~ 5461 ~~~~~~~~~~ ~~~~~-~~-- ~~~~-~-~~~ ~~~~~~~~~( ~~~~~~~~)~ ~~~~~~~~~~ 5521 ~~~~~~-~~~ ~--~~~~~~~ ~~-~~~~~~~ (-~~~~~~~- )~~~~~~~-~ ~~~~~~~~~- 5581 ~~~~~~~~~~ ~~|~~~~-~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5641 ~~~-~~~~~- ~~~-~~~~~- ~~~~-~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ---------- 5701 -------(~~ ~~~~~~)~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~-~ 5761 ~~~~~~~~~~ -~~~~-|~~~ ~~~~~~~~~~ ~~-~~~~~-~ ~~~~~~~~~~ ~~~~~~~~~~ 5821 ~~~~~~~~~~ ~~-------- -----~~~-~ ~~~~~~(~~~ ~)~~~~~~~~ ~~~~~~~~~~ 5881 ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS L.tarent.1 5903 bp RNA RNA 11-JAN-191 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: M84225 LOCUS LEIRGSSRRA 2195 bp ds-DNA INV 14-JAN-1992 DEFINITION L.tarentolae small subunit rRNA gene. ACCESSION M84225 KEYWORDS small subunit ribosomal RNA. SOURCE Leishmania tarentolae DNA. ORGANISM Leishmania tarentolae Eukaryota; Animalia; Protozoa; Sarcomastigophora; Mastigophora; Kinetoplastida; Trypanosomatina; Trypanosomatidae. REFERENCE 1 (bases 1 to 2195) AUTHORS Briones,M.R., Nelson,K., Beverley,S.M., Affonso,H.T., Camargo,E.P. and Floeter-Winter,L.M. TITLE Leishmania tarentolae taxonomic relatedness inferred from phylogenetic analysis of the small subunit ribosomal RNA gene JOURNAL Unpublished (1992) STANDARD full staff_review FEATURES Location/Qualifiers prim_transcript 1..2195 /function="small subunit rRNA" /product="small subunit rRNA" /evidence=EXPERIMENTAL /citation=[1] /partial rRNA 1..2195 /product="small subunit rRNA" /evidence=EXPERIMENTAL BASE COUNT 550 a 502 c 588 g 555 t ORIGIN BASE COUNT 550 a 502 c 588 g 555 t 3708 others ORIGIN 1 |~~~~~~~~~ ~~~~~GAUCU GGU(UGA)UU CU|GCCAGU- A-GUCA-UAU --GCUUGUUU 61 CAAG|-GACU UA-GCCAUGC A-UGCCU-CA GA|------- |-------(- ---)[----- 121 ---------- --------au cacugc--au ---------- -uu-g-cag- gaa]------ 181 -----|---U CU|G-CGCA- UGGCU-CAUU ACAu-caga- cgu-aauc-- ----ugccgc 241 aaaa<----- ---------- ---------- --aucuugcg guuu-ccgca a--------- 301 ->AAUUGG-A UAACUUGGC( -G-AAAC)GC CAAGC-UAA- UACAUG---- ----(----) 361 ---------- -------(-- --)--|---- -- -ucuuuugac -ga|acaacu gc|--CCU-A UCA--GCUUG U-GAUGGCC- 1141 GU(-GUAGUG G)ACU-GCCA U-|GGCGU-U GAC|GGGA-G --CGGG|GGA -U-(UAGG-) 1201 GUU-CGAUU- CCG|GAGAGG G-AGCC(U-G AGAAAU)AGC UACC-ACUUC (UACG-)GAG 1261 -GGCAGC-A- ---------| GGC-GC-GC- AAAUU-GCCC -AAUGUC-A( aaacaaaa)C 1321 GAUG-A-GGC -|A|GCGAAA AGAA-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AG AGUUGUCAG- --UCC(---- ---auuu)GG A--UU-GUCA --UUUCAAUG 1501 ---GGGGAUA ----UUUAAA -CCCA--UCC A-----AU-A U-CGA-GUAA C---->AAUU 1561 GGAG|GA-CA A-GU-C-UGG U-G(CCA-GC -ACCC|GC-G GU-AA)UUCC AG-|CUCCAA 1621 A-AGCGUA|U AUUAA--UGC UGUUG-CUG| UUA--AAGGG UUCGUAGUUG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 aacug-uggg c-ugug-cag guuugu--cc cu-ggucguc ccgucc-aug ---------- 1801 ---------- -----uc-g- gauuug-gug -acccaggcc cuugca-gcc c--------- 1861 -----gugaa c-auucaaag aaacaagaaa cacgggagug guuccuuucc ugauu----- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ------ua-- -cgcauguca ugcaugccag ggggcguccg ugauuuuuua cugugacuaa 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- --------a- gaagcgu-ga cuaaagcagu 2161 cauuuga--- ---------- ---------- --cuugaauu agaa------ ---------- 2221 ---agcaugg gauaacaaag gagcag--cc ucuaggcuac cguuucggcu uuuguugguu 2281 uuaaaggucu auuggagauu auggagcugu gcgacaagug cuuucccauc gcaac----- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---uucgguu cggugugug- -------g-- ---------- -cgccuuug- 2521 --agggguuu agug-c-guc cggugcgagc uccggu---- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ------ucgu 2821 -cc-ggccgu -aa-cgccuu uucaacuca- cggccucuag g--aaugaag ga--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGU|AGUU ---------- 3001 --CGGGGGAG AA|--CGUAC UGGGGCG-UC -AGAG(GU-G AAA---)UUC U-UAGA-C-C 3061 GCACC-AAG- A-CGAACU-A CAGC(-GAAG )--GC|A--- UUCUUC-AA| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUA ---CCUUCCU -CAA-U|CA- A-GAACCAAA 3301 GUGUGGAGA- UCGAAGAUG( AUUA------ ---------- ---------- ---------- 3361 ---------- GAGAC)CA-U -UGUAG|UCC AC--ACU-GC AAACGAUGAC ACC|CA|--- 3421 -ugaauu-gg gga-u-c--- ----(----- ---------) uuaugggccg gccagcggca 3481 ggguuuaccc uguguc-agc accgcgc--- ---ccgcuuu uaccaacuua cguaucuuuu 3541 cuauuu---- ---------- ---------- ------ggcc uuuaccggcu acccacggga 3601 auauccucag cac------g u-uu-ucu-g -u-uuuuuc- ---------- ----acGC(- 3661 GAAA-)GCuu uGAGgu-uac aGUC|-U|C- AGGGGGGAGU AC--GU-UC( --GCAA-)GA 3721 GUG-AAACUU -AAAG--AAA -UUG|AC-GG -AA-UGGCA- -CCAC-AAGA ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --C-GU|-GG 4021 AGCGUGCG|G UU-UAAUUUG (ACUCAA-CA )CGGG--GAA CUUUACCAGA UC[cgg-aca 4081 ggau-gagga uu-----gac aga(uugagu g-u)------ ucuuu----- cuc-gauu-c 4141 ccugaa---- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU-G-CAUG |GCC|GC-UU UUG|GUCGG- U|GGA(-GUG 4261 A-)UUUGUU- -UGG(UU-GA UU)CCGUCA- AC-GGACGAG AUCCA-AG|- ---------- 4321 ------(--- --)[CUGCCC AG--uagaau u--caga-au ugcccauaga auag-caa-a 4381 -----cucau c---ggcggg u-----(uuu -)-------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ------accc aacggugggc ug-------c auucgguc-- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ----gaauu- cu-------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------U CUCUGCGG]- --|------- ---------- GAuu-ccu-u ug-u(----- 5041 -aauugc-)a caag-g-ugA AAUU-UUGGG CAACAG--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UG A|UGCU|CC- 5221 U-CAA-UGUU CUGG-GCGAC A-CGCGCACU ACAAU--G-U CAGUG----- ---------- 5281 ---(------ ----)[agaa caagaaa--- ---------- ---------- ---------- 5341 ---------- ---aacgac( -uuuu)gucg a--------- ---------- ---------- 5401 accuacu-ug auc(aaaa-) gagug----g ggaaaccccg gaauca]--- ---------- 5461 -------cau aga-c-c--- cACU-U-GGG ACCGAGGAU( UGCAAUUA)U UGGUCGCGCA 5521 ACGAGG-AAU G--UCUCGUA GG-CGC-AGC (-UCAUCAA- )ACUGU-G-C -CGAUUACG- 5581 U-CCCUGCCA UU|UGUA-CA CACCGCCCGU CGUUGU-U-U CC-GAU--GA UG-GUGca-- 5641 aua-cagg-- uga-ucgga- cagg-cgg-- -ug------- ---------- ---------- 5701 -------(uu u-----)--- ---------- ---------- ---------- ---------- 5761 uauccg-ccc -gaaa-|guu -caccgauau uu-cuu-c-a auag-AGGAA GC-AAAA-G- 5821 UCGUAACAAG GU-------- -----A-G-C UGUAGG(UGA A)CCUGCAGC UGnnnnn--- 5881 --nnn~~~~~ ~~~~~~~~|| ||| // LOCUS L.tarent.2 5903 bp RNA RNA 11-JAN-191 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: X53916 LOCUS LEISSRRNC 2137 bp ds-DNA INV 22-MAY-1992 DEFINITION L.tarentolae small subunit ribosomal RNA gene ACCESSION X53916 KEYWORDS small subunit ribosomal RNA. SOURCE Leishmania tarentolae DNA. ORGANISM Leishmania tarentolae Eukaryota; Animalia; Protozoa; Sarcomastigophora; Mastigophora; Kinetoplastida; Trypanosomatina; Trypanosomatidae. REFERENCE 1 (bases 1 to 2137) AUTHORS Nelson,K. and Beverley,S.M. TITLE Evolution of nuclear small subunit ribosomal RNAs in kinetoplastid protozoans: New perspectives on the evolution of vertebrate parasitism JOURNAL Unpublished (1992) STANDARD full automatic COMMENT *source: strain=LTC-1; *source: stage=promastigote; *source: cell_type=LRC-1; From EMBL entry LTSSRRNA; dated 27-APR-1992. FEATURES Location/Qualifiers misc_feature 1..2137 /note="transcribed region" /gene="nuclear small subunit ribosomal RNA" BASE COUNT 536 a 491 c 570 g 540 t ORIGIN BASE COUNT 536 a 491 c 570 g 540 t 3766 others ORIGIN 1 |~~~~~~~~~ ~~~~~nnnnn nnn(nnn)nn nn|nnnnnU- A-GUCA-UAU --GCUUGUUU 61 CAAG|-GACU UA-GCCAUGC A-UGCCU-CA GA|------- |-------(- ---)[----- 121 ---------- --------au cacugc--au ---------- -uu-g-cag- gaa]------ 181 -----|---U CU|G-CGCA- UGGCU-CAUU ACAu-caga- cgu-aauc-- ----ugccgc 241 aaaa<----- ---------- ---------- --aucuugcg guuu-ccgca a--------- 301 ->AAUUGG-A UAACUUGGC( -G-AAAC)GC CAAGC-UAA- UACAUG---- ----(----) 361 ---------- -------(-- --)--|---- -- -ucuuuugac -ga|acaacu gc|--CCU-A UCA--GCUUG U-GAUGGCC- 1141 GU(-GUAGUG G)ACU-GCCA U-|GGCGU-U GAC|GGGA-G --CGGG|GGA -U-(UAGG-) 1201 GUU-CGAUU- CCG|GAGAGG G-AGCC(U-G AGAAAU)AGC UACC-ACUUC (UACG-)GAG 1261 -GGCAGC-A- ---------| GGC-GC-GC- AAAUU-GCCC -AAUGUC-A( aaacaaaa)C 1321 GAUG-A-GGC -|A|GCGAAA AGAA-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AG AGUUGUCAG- --UCC(---- ---auuu)GG A--UU-GUCA --UUUCAAUG 1501 ---GGGGAUA ----UUUAAA -CCCA--UCC A-----AU-A U-CGA-GUAA C---->AAUU 1561 GGAG|GA-CA A-GU-C-UGG U-G(CCA-GC -ACCC|GC-G GU-AA)UUCC AG-|CUCCAA 1621 A-AGCGUA|U AUUAA--UGC UGUUG-CUG| UUA--AAGGG UUCGUAGUUG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 aacug-uggg c-ugug-cag guuugu--cc cu-ggucguc ccgucc-aug ---------- 1801 ---------- -----uc-g- gauuug-gug -acccaggcc cuugca-gcc c--------- 1861 -----gugaa c-auucaaag aaacaagaaa cacgggagug guuccuuucc ugauu----- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ------ua-- -cgcauguca ugcaugccag ggggcguccg ugauuuuuua cugugacuaa 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- --------a- gaagcgu-ga cuaaagcagu 2161 cauuuga--- ---------- ---------- --cuugaauu agaa------ ---------- 2221 ---agcaugg gauaacaaag gagcag--cc ucuaggcuac cguuucggcu uuuguugguu 2281 uuaaaggucu auuggagauu auggagcugu gcgacaagug cuuucccauc gcaac----- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---uucgguu cggugugug- -------g-- ---------- -cgccuuug- 2521 --agggguuu agug-c-guc cggugcgagc uccggu---- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ------ucgu 2821 -cc-ggccgu -aa-cgccuu uucaacuca- cggccucuag g--aaugaag ga--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGU|AGUU ---------- 3001 --CGGGGGAG AA|--CGUAC UGGGGCG-UC -AGAG(GU-G AAA---)UUC U-UAGA-C-C 3061 GCACC-AAG- A-CGAACU-A CAGC(-GAAG )--GC|A--- UUCUUC-AA| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUA ---CCUUCCU -CAA-U|CA- A-GAACCAAA 3301 GUGUGGAGA- UCGAAGAUG( AUUA------ ---------- ---------- ---------- 3361 ---------- GAGAC)CA-U -UGUAG|UCC AC--ACU-GC AAACGAUGAC ACC|CA|--- 3421 -ugaauu-gg gga-u-c--- ----(----- ---------) uuaugggccg gccagcggca 3481 ggguuuaccc uguguc-agc accgcgc--- ---ccgcuuu uaccaacuua cguaucuuuu 3541 cuauuu---- ---------- ---------- ------ggcc uuuaccggcu acccacggga 3601 auauccucag cac------g u-uu-ucu-g -u-uuuuuc- ---------- ----acGC(- 3661 GAAA-)GCuu uGAGgu-uac aGUC|-U|C- AGGGGGGAGU AC--GU-UC( --GCAA-)GA 3721 GUG-AAACUU -AAAG--AAA -UUG|AC-GG -AA-UGGCA- -CCAC-AAGA ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --C-GU|-GG 4021 AGCGUGCG|G UU-UAAUUUG (ACUCAA-CA )CGGG--GAA CUUUACCAGA UC[cgg-aca 4081 ggau-gagga uu-----gac aga(uugagu g-u)------ ucuuu----- cuc-gauu-c 4141 ccugaa---- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU-G-CAUG |GCC|GC-UU UUG|GUCGG- U|GGA(-GUG 4261 A-)UUUGUU- -UGG(UU-GA UU)CCGUCA- AC-GGACGAG AUCCA-AG|- ---------- 4321 ------(--- --)[CUGCCC AG--uagaau u--caga-au ugcccauaga auag-caa-a 4381 -----cucau c---ggcggg u-----(uuu -)-------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ------accc aacggugggc ug-------c auucgguc-- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ----gaauu- cu-------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------U CUCUGCGG]- --|------- ---------- GAuu-ccu-u ug-u(----- 5041 -aauugc-)a caag-g-ugA AAUU-UUGGG CAACAG--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UG A|UGCU|CC- 5221 U-CAA-UGUU CUGG-GCGAC A-CGCGCACU ACAAU--G-U CAGUG----- ---------- 5281 ---(------ ----)[agaa caagaaa--- ---------- ---------- ---------- 5341 ---------- ---aacgac( -uuuu)gucg a--------- ---------- ---------- 5401 accuacu-ug auc(aaaa-) gagug----g ggaaaccccg gaauca]--- ---------- 5461 -------cau aga-c-c--- cACU-U-GGG ACCGAGGAU( UGCAAUUA)U UGGUCGCGCA 5521 ACGAGG-AAU G--UCUCGUA GG-CGC-AGC (-UCAUCAA- )ACUGU-G-C -CGAUUACG- 5581 U-CCCUGCCA UU|UGUA-CA CACCGCCCGU CGUUGU-U-U CC-GAU--GA UG-GUGca-- 5641 aua-cagg-- uga-ucgga- cagg-cgg-- -ug------- ---------- ---------- 5701 -------(uu u-----)--- ---------- ---------- ---------- ---------- 5761 uauccg-ccc -gaaa-|guu -caccgauau uu-cuu-c-a auag-AGGAA GC-AAnn-n- 5821 nnnnnnnnnn nn-------- -----n-n-n nnnnnn(nnn n)nnnnnnnn nnnnnnn--- 5881 --nnn~~~~~ ~~~~~~~~|| ||| // LOCUS Try.El-CP 5903 bp RNA RNA 11-JAN-191 DEFINITION Trypanosoma sp. (strain El-CP). ACCESSION No information KEYWORDS No information. SOURCE Trypanosoma sp. (strain El-CP). ORGANISM Trypanosoma sp. (strain El-CP). REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: L14841 LOCUS TRBRRSS 2130 bp ss-rRNA RNA 26-APR-1993 DEFINITION Trypanosoma sp. ribosomal RNA small subunit. ACCESSION L14841 KEYWORDS ribosomal RNA small subunit. SOURCE Trypanosoma sp. (strain El-CP) rRNA. ORGANISM Trypanosoma sp. Eukaryota; Animalia; Protozoa; Sarcomastigophora; Mastigophora; Kinetoplastida; Trypanosomatina; Trypanosomatidae. REFERENCE 1 (bases 1 to 2130) AUTHORS Maslov,D.A. and Simpson,L. TITLE Phylogenetic analysis of fresh water fish parasites Trypanoplasma borreli and Trypanosoma sp. El-CP based on the sequences of small subunit ribosomal RNA JOURNAL Unpublished (1993) STANDARD full automatic FEATURES Location/Qualifiers rRNA 1..2130 /standard_name="SSU rRNA" /product="ribosomal RNA small subunit" /label=SSUrRNA /note="putative" source 1..2130 /organism="Trypanosoma sp." /strain="El-CP" /sequenced_mol="rRNA" BASE COUNT 541 a 476 c 571 g 542 t ORIGIN BASE COUNT 541 a 476 c 571 g 542 t 3773 others ORIGIN 1 |~~~~~~~~~ ~~~~~nnnnn nnn(nnn)nn nn|nnnnnn- n-nnCA-UAU --GCUUGUUU 61 CAAG|-GACU UA-GCCAUGC A-UGCCU-CA GA|------- |-------(- ---)[----- 121 ---------- --------au cacugc--ac ---------- -uu-g-cag- gaa]------ 181 -----|---U CU|G-CGCA- UGGCU-CAUU ACAu-caga- cgu-aauc-- ----ugccgc 241 aaac<----- ---------- ---------- --auguugcg guua-ccgca u--------- 301 ->UAUUGG-A UAACUUGGC( -G-AAAA)GC CAAGC-UAA- UACAUG---- ----(----) 361 ---------- -------(-- --)--|---- -- -ucuuuugac -ga|acaacu gc|--CCU-A UCA--GCCAG U-GAUGGCC- 1141 GU(-GUAGUG G)ACU-GCCA U-|GGCGU-U GAC|GGGA-G --CGGG|GGA -U-(UAGG-) 1201 GUU-CGAUU- CCG|GAGAGG G-AGCC(U-G AGAAAU)AGC UACC-ACUUC (UACG-)GAG 1261 -GGCAGC-A- ---------| GGC-GC-GC- AAAUU-GCCC -AAUGUC-A( aaacaaac)- 1321 GAUG-A-GGC -|A|GCGAAA AGAA-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AG AGCCGACAG- --UCC(---- -caauug)GG A--UU-GUCG U-AUUCAAUG 1501 ---GGGGUUA ----UUUAAU -ACCA--UCC A-----AU-A U-CGA-GUAA C---->AAUU 1561 GGAG|GA-CA A-GU-C-UG- U-G(CCA-GC -ACCC|GC-G GU-AA)UUCC AG-|CUCCAA 1621 A-AGCGUA|U AUUAA--UGC UGUUG-CUG| UUA--AAGGG UUCGUAGUUG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 aauug-aggg c-cucu-gag gc---g--ca cu-gguaugu cccguu-cac ---------- 1801 ---------- -----uu-c- gaauug-gug -acccaggcc cuugug-guc c--------- 1861 -----gugaa c-auuc--ag aaacaagaaa cacgggagug guuccuuccu -gauu----- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ------uu-- -cgcauguca ugcaugccag ggggcgcccg ugauuuuu-a cugugacuaa 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- --------a- aaagugu-ga ccaaagcagu 2161 cauccga--- ---------- ---------- --cuugaauu agaa------ ---------- 2221 ---agcaugg gauaacaaag gagcag--cc uaugggcuac cguuucggcu uuuguugguu 2281 uuaaaagcuc auuggagauu augggguugu gcgacaagcg gcugggug-- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ----ccuauu guguacccg- -------u-- ---------- -cgccuuugu 2521 gggaaauccg uacc-g-aug cggggcggcu ucggcu---- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ------ugcu 2821 -cc-ucgcgg -ug-ccuucc cucaacuca- cugcuuccag g--aaugaag ga--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGU|AGUU ---------- 3001 --CGGGGGAG AA|--CGUAC UGGUGCG-UC -AGAG(GU-G AAA---)UUC U-UAGA-C-C 3061 GCACC-AAG- A-CGAACU-A CAGC(-GAAG )--GC|A--- UUCUUC-AA| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUA ---CCUUCCU -CAA-U|CA- A-GAACCAAA 3301 GUGUGGGGA- UCGAAGAUG( AUUA------ ---------- ---------- ---------- 3361 ---------- GAGAC)CA-U -UGUAG|UCC AC--ACU-GC AAACGAUGAC ACC|CA|--- 3421 -ugaauu-gg gga-g-u--- ----(----- ---------) uuuuggucgc aggcgauguc 3481 ggguucaucu cgcucaucac cucaccaa-- --ugauauca auuuacgugc auauucuuuu 3541 cggucc---- ---------- ---------- -------ucg caagggggcc uuuuacggga 3601 auauccucag cac------g uuuu-cuu-a -c-uucuuc- ---------- ----acGC(- 3661 GAAA-)GCuu uGAGgu-uac aGUC|-U|C- AGGGGGGAGU AC--GU-UC( --GCAA-)GA 3721 GUG-AAACUU -AAAG--AAA -UUG|AC-GG -AA-UGGCA- -CCAC-AAGA ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --C-GU|-GG 4021 AGCGUGCG|G UU-UAAUUUG (ACUCAA-CA )CGGG--GAA CUUUACCAGA UC[cgg-aca 4081 gggu-gagga uu-----gac aga(uugagu g-u)------ ucuuu----- cuc-gauc-c 4141 ccugaa---- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU-G-CAUG |GCC|GC-UU UUG|GUCGG- U|GGA(-GUG 4261 A-)UUUGUU- -UGG(UU-GA UU)CCGUCA- AC-GGACGAG AUCCA-AG|- ---------- 4321 ------(--- --)[CUGCCC AG--uaagau u--caga-au ugcccauagg auag-caa-u 4381 -----cccuu c---cgcggg u-----(uuu -)-------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ------accu aagggggggc gg-------u auucguuu-- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ----guauc- cu-------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------U CUCUGCGG]- --|------- ---------- GAuu-ccu-u -g-a(----- 5041 -cuuugc-)a caag-g-ugA GAUU-UUGGG CAACAG--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UG A|UGCU|CC- 5221 U-CAA-UGUU CUGG-GCGAC A-CGCGCACU ACAAU--G-U CAGUG----- ---------- 5281 ---(------ ----)[agaa caagaaa--- ---------- ---------- ---------- 5341 ---------- ---aacgac( -uuuu)gucg u--------- ---------- ---------- 5401 accuacu-ug acc(aaaa-) gagug----g gaaaacaccg gaauca]--- ---------- 5461 -------cau aga-c-c--- cACU-U-GGG ACCGAGUAU( UGCAAUUA)U UGGUCGCGCA 5521 ACGAGG-AAU G--UCUCGUA GG-CGC-AGC (-UCAUCAA- )ACUGU-G-C -CGAUUACG- 5581 U-CCCUGCCA UU|UGUA-CA CACCGCCCGU CGUUGU-U-U CC-GAU--GA UG-GUGca-- 5641 aua-cagg-- uga-ucgga- cagu-cga-- --g------- ---------- ---------- 5701 -------(ug uu--u-)--- ---------- ---------- ---------- ---------- 5761 cacuua-acu -gaaa-|guu -caccgauau ug-cuu-c-a uuag-AGGAA GC-AAAA-G- 5821 Unnnnnnnnn nn-------- -----n-n-n nnnnnn(nnn n)nnnnnnnn nnnnnnn--- 5881 --nnn~~~~~ ~~~~~~~~|| ||| // LOCUS (2)-Hetero 5903 bp RNA RNA 13-JAN-1999 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: DIVIDER BASE COUNT 0 a 0 c 0 g 0 t 5903 others ORIGIN 1 |......... .......... .......... .......... .......... .......... 61 .......... .......... .......... .......... .......... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......... .......... .......... .......... 241 .......... .......... .......... .......... .......... .......... 301 .......... .......... .......... .......... .......... .......... 361 .......... .......... .......... .......... .......... .......... 421 .......... .......... .......... .......... .......... .......... 481 .......... .......... .......... .......... .......... .......... 541 .......... .......... .......... .......... .......... .......... 601 .......... .......... .......... .......... .......... .......... 661 .......... .......... .......... .......... .......... .......... 721 .......... .......... .......... .......... .......... .......... 781 .......... .......... .......... .......... .......... .......... 841 .......... .......... .......... .......... .......... .......... 901 .......... .......... .......... .......... .......... .......... 961 .......... .......... .......... .......... .......... .......... 1021 .......... .......... .......... .......... .......... .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .......... .......... .......... .......... .......... 1201 .......... .......... .......... .......... .......... .......... 1261 .......... .......... .......... .......... .......... .......... 1321 .......... .......... .......... .......... .......... .......... 1381 .......... .......... .......... .......... .......... .......... 1441 .......... .......... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .....>.... 1561 .......... .......... .......... .......... .......... ..-|...... 1621 .......... .......... .......... .......... .......... .......... 1681 .......... .......... .......... .......... .......... .......... 1741 .......... .......... .......... .......... .......... .......... 1801 .......... .......... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .......... .......... 1921 .......... .......... .......... .......... .......... .......... 1981 .......... .......... .......... .......... .......... .......... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... .......... .......... .......... .......... .......... 2161 .......... .......... .......... .......... .......... .......... 2221 .......... .......... .......... .......... .......... .......... 2281 .......... .......... .......... .......... .......... .......... 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... .......... 2701 .......... .......... .......... .......... .......... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... .......... 2881 .......... .......... .......... .......... .......... .......... 2941 .......... .......... .......... .......... .......... .......... 3001 .......... .......... .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .......... .......... 3181 .......... .......... .......... .......... .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .......... .......... .......... 3361 .......... .......... .......... .......... .......... .......... 3421 .......... .......... .......... .......... .......... .......... 3481 .......... .......... .......... .......... .......... .......... 3541 .......... .......... .......... .......... .......... .......... 3601 .......... .......... .......... .......... .......... .......... 3661 .......... .......... .......... .......... .......... .......... 3721 .......... .......... .......... .......... .......... .......... 3781 .......... .......... .......... .......... .......... .......... 3841 .......... .......... .......... .......... .......... .......... 3901 .......... .......... .......... .......... .......... .......... 3961 .......... .......... .......... .......... .......... .......... 4021 .......... .......... .......... .......... .......... .......... 4081 .......... .......... .......... .......... .......... .......... 4141 .......... .]........ .......... .......... .......... .......... 4201 .......... .......... .......... .......... .......... .......... 4261 .......... .......... .......... .......... .......... .......... 4321 .......... .......... .......... .......... .......... .......... 4381 .......... .......... .......... .......... .......... .......... 4441 .......... .......... .......... .......... .......... .......... 4501 .......... .......... .......... .......... .......... .......... 4561 .......... .......... .......... .......... .......... .......... 4621 .......... .......... .......... .......... .......... .......... 4681 .......... .......... .......... .......... .......... .......... 4741 .......... .......... .......... .......... .......... .......... 4801 .......... .......... .......... .......... .......... .......... 4861 .......... .......... .......... .......... .......... .......... 4921 .......... .......... .......... .......... .......... .......... 4981 .......... .......... .......... .......... .......... .......... 5041 .......... .......... .......... .......... .......... .......... 5101 .......... .......... .......... .......... .......... .......... 5161 .......... .......... .......... .......... .......... .......... 5221 .......... .......... .......... .......... .......... .......... 5281 .......... .......... .......... .......... .......... .......... 5341 .......... .......... .......... .......... .......... .......... 5401 .......... .......... .......... .......... .......... .......... 5461 .......... .......... .......... .......... .......... .......... 5521 .......... .......... .......... .-........ .......... .......... 5581 .......... .......... .......... .......... .......... .......... 5641 .......... .......... .......... .......... .......... .......... 5701 .......... .......... .......... .......... .......... .......... 5761 .......... .......... .......... .......... .......... .......... 5821 .......... .......... .......... .......... .......... .......... 5881 .......... ........|| ||| // LOCUS N.gruberi 5903 bp RNA RNA 11-JAN-191 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: M18732 LOCUS M18732 2019 bp UNA 15-DEC-1988 DEFINITION Naegleria gruberi, small subunit ribosomal RNA. ACCESSION M18732 REFERENCE 1 (bases 1 to 2019) AUTHORS Clark,C. and Cross,G. TITLE Small subunit ribosomal RNA serquence from naegleria gruberi JOURNAL Mol Biol Evol (1988) In press STANDARD unannotated staff_entry COMMENT Submitted in computer readable form by the C.Clark 06-APR-1988 BASE COUNT 516 a 429 c 535 g 539 t ORIGIN BASE COUNT 516 a 429 c 535 g 539 t 3884 others ORIGIN 1 |--------- -----UACCU GGU(UGA)UC CU|GCCAGU- A-CU-A-UAU --GCUUGUCU 61 CAAA|-GCCU AA-GCCAUGC A-AAUGU-AA GA|------- |-------(- ---)[ucaau 121 cauaugc--- -------ggu uucggccgug ---------- -uaua-auga uag]------ 181 -----|---U CU|G-UGGA- AGGCU-CAUU AUAa-cagu- uau-acuc-- ----cuagcc 241 acug<----- ---------- ---------- ---------g aaaguuu--- ---------- 301 ->ACAAGG-A UACCACCGU( -U-AACU)GC AGCGA-UA-- UACUUG---- ----(----) 361 ---------- -------(-- --)--|---- -- -caggcagag -ga|guuucu ua|--CCU-A UCA--GCUC- --GUUGUUU- 1141 GU(-UUAAAG G)ACA-AACC A-|GGCUU-U GAC|GGGU-A --CGGG|GAA -U-(CAGU-) 1201 GUU-CGAUU- CCG|GAGAGG G-AGCC(U-G AGAAAU)CGC UACC-ACAUC (UAAG-)GAC 1261 -GGCAGC-A- ---------| GGC-GC-GC- AAAUU-ACCC -AAUCUC-A( ---aua--)C 1321 GAGG-A-GGU -|A|GUGACA AGCU-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- -------agu 1441 gacuccacac cauucggu-- gggga(---- gguauug)uc uucug-acga u-uuuccau- 1501 ------gauu ----ugggu- -guag-aUAA C-----CC-U U-AGA-GUAG C---->CAUU 1561 GGAG|GA-AA A-GU-C-UGG U+G(CCA-GC -ACCC|GC-G GU-AA)UUCC AG-|CUCCAA 1621 G-AGCGUA|U AUUAA--UAC UGCUG-UAG| UUA--AAACG CCCGUAGUAU |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 accuaagagu g-ggug-ugu aguaau--u- ag-uuuuacc agagga-cgg ---------- 1801 ---------- ------u-u- ggcgag-a-- -guuuaucac ucuugu-uug cc-------- 1861 uacuuuuggu a-gacuuuag ucgggcugga ucuuuggucc ucgucugaca guugc----- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ------uacg uacuuacuua ccacgguuca uccgugagg- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------c 2161 ccuug----- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------g cuugcaacug ua-aaua--a 2461 aucguugugc uu-aa-ag-c gggcuaug-- -------a-- ---------- -ua------- 2521 ------cucu gcc--a--ga gcgauu-uag cauggga|cu -gcagag-ua -gcug----- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- uauuugagcg aa-------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- --gg|uugca 2821 --c-cucggu -gu-ggcug- ---gagcuu- gguacagcgc u--uguaaug ga--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GCUC|AGGG ---------- 3001 --UGAGGCCC CG|--GGUAC CAUGAGG-CU -AGAG(GU-G AAA---)UUC U-GAGA-C-C 3061 CUCAU-GUG- A-CCAACU-A AGGC(-GAAA )--GC|Uguc GUGGGC-CA| CC-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------ACA ---AGCUCGU -CUA-U|CA- G-GGACAAAA 3301 GUUGGGGGA- UCGAAGACG( AUUA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CGUAG|UCC CA--ACU-AU AAACGAUACC AAC|CG|--- 3421 --aguau-uu ggg-a-a-ga ----(cacua ucccagcca) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ------uc-u u-cu-cag-a ---acuc--- ---------- ----aaGG(- 3661 GAAA-)CCuu -aaguc-uuu GGGU|-U|C- UGGGGGGAGU AU--AG-UC( --GCAA-)GA 3721 CCG-AAACUU -AAAG--GAA -UUG|AC-GG -AA-AGGCA- -CCAC-CAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --A-GU|-GG 4021 AGUCUGCG|G CU-UAAUUCG (ACUCAA-CA )CGGG--GAA ACUCACCAGG UC[agg-aca 4081 caag-uuuga uu-----gac agg(uuaaua g-c)------ ccuuu----- cuu-gauu-g 4141 uguggu---- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|GG-GU- AGU-G-CAUG |GCC|GU-UU CCA|GUUCG- U|GGA(-GUG 4261 A-)UCUGUC- -UUG(UU-AA UU)CAGAUA- AC-GAACGAG ACCUA-AG|- ---------- 4321 ------(--- --)[CCU--U UAACUAGCcg [--uaggccu uuuc(cuucg )ggg-aaggg 4381 uua--]-guu u---gucgga acaggu(uuc g)-------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- -------gcc 4621 uguuccaaaa c--------- ---cu[acga gacuuuug-- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ----u]caG- CU-------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------U CUUAAAGG]- --|------- ---------- GACU-Uca-u -u-c(----- 5041 guaaacua)g gaug-A-GGA AGAU-UUAGG CCAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UG A|UGCU|CU- 5221 U-AGA-UGUC CUGG-GCUGC A-CGCGUACU ACAAU--A-A CGGUA----- ---------- 5281 ---(------ ----)[ccag cgagcgc--- ---------- ---------- ---------- 5341 ---------- -----uaug( -guuu)uaua a--------- ---------- ---------- 5401 -ccccuu-au ccu(-aau-) aggau----u gggaaaacuu uucaaa]--- ---------- 5461 -------cac cgu-u-a--- uGAC-A-GGG AUCGAGGAU( UGGAAC--)A UCCUCGUG-A 5521 ACGAGG-AAU U--CCUAGUA AG-CGU-GGU (-UCAUCAU- )ACCAC-A-U -UGAUUACG- 5581 U-CCCUGCCU UU|UGUA-CA CACCGCCCGU CGCUCC-U-A CC-GAU--GG GA-Cgaag-a 5641 gau-g-aac- cug-gcgga- ccga-acc-- ---------- ---------- ---------- 5701 -------(gc aa----)--- ---------- ---------- ---------- ---------- 5761 ---ggu-aag -ggaa-|acc -aguuaaauc uc-uuc-g-u cugu-AGGAA GG-AAAA-G- 5821 UCGUAACAAG GU-------- -----C-U-U CGUAGG(UGA A)CCUGCGUA GGGAUCA--- 5881 --UUU~~~~~ ~~~~~~~~|| ||| // LOCUS (2)-Micros 5903 bp RNA RNA 13-JAN-1999 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: DIVIDER BASE COUNT 0 a 0 c 0 g 0 t 5903 others ORIGIN 1 |......... .......... .......... .......... .......... .......... 61 .......... .......... .......... .......... .......... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......... .......... .......... .......... 241 .......... .......... .......... .......... .......... .......... 301 .......... .......... .......... .......... .......... .......... 361 .......... .......... .......... .......... .......... .......... 421 .......... .......... .......... .......... .......... .......... 481 .......... .......... .......... .......... .......... .......... 541 .......... .......... .......... .......... .......... .......... 601 .......... .......... .......... .......... .......... .......... 661 .......... .......... .......... .......... .......... .......... 721 .......... .......... .......... .......... .......... .......... 781 .......... .......... .......... .......... .......... .......... 841 .......... .......... .......... .......... .......... .......... 901 .......... .......... .......... .......... .......... .......... 961 .......... .......... .......... .......... .......... .......... 1021 .......... .......... .......... .......... .......... .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .......... .......... .......... .......... .......... 1201 .......... .......... .......... .......... .......... .......... 1261 .......... .......... .......... .......... .......... .......... 1321 .......... .......... .......... .......... .......... .......... 1381 .......... .......... .......... .......... .......... .......... 1441 .......... .......... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .....>.... 1561 .......... .......... .......... .......... .......... ..-|...... 1621 .......... .......... .......... .......... .......... .......... 1681 .......... .......... .......... .......... .......... .......... 1741 .......... .......... .......... .......... .......... .......... 1801 .......... .......... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .......... .......... 1921 .......... .......... .......... .......... .......... .......... 1981 .......... .......... .......... .......... .......... .......... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... .......... .......... .......... .......... .......... 2161 .......... .......... .......... .......... .......... .......... 2221 .......... .......... .......... .......... .......... .......... 2281 .......... .......... .......... .......... .......... .......... 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... .......... 2701 .......... .......... .......... .......... .......... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... .......... 2881 .......... .......... .......... .......... .......... .......... 2941 .......... .......... .......... .......... .......... .......... 3001 .......... .......... .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .......... .......... 3181 .......... .......... .......... .......... .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .......... .......... .......... 3361 .......... .......... .......... .......... .......... .......... 3421 .......... .......... .......... .......... .......... .......... 3481 .......... .......... .......... .......... .......... .......... 3541 .......... .......... .......... .......... .......... .......... 3601 .......... .......... .......... .......... .......... .......... 3661 .......... .......... .......... .......... .......... .......... 3721 .......... .......... .......... .......... .......... .......... 3781 .......... .......... .......... .......... .......... .......... 3841 .......... .......... .......... .......... .......... .......... 3901 .......... .......... .......... .......... .......... .......... 3961 .......... .......... .......... .......... .......... .......... 4021 .......... .......... .......... .......... .......... .......... 4081 .......... .......... .......... .......... .......... .......... 4141 .......... .]........ .......... .......... .......... .......... 4201 .......... .......... .......... .......... .......... .......... 4261 .......... .......... .......... .......... .......... .......... 4321 .......... .......... .......... .......... .......... .......... 4381 .......... .......... .......... .......... .......... .......... 4441 .......... .......... .......... .......... .......... .......... 4501 .......... .......... .......... .......... .......... .......... 4561 .......... .......... .......... .......... .......... .......... 4621 .......... .......... .......... .......... .......... .......... 4681 .......... .......... .......... .......... .......... .......... 4741 .......... .......... .......... .......... .......... .......... 4801 .......... .......... .......... .......... .......... .......... 4861 .......... .......... .......... .......... .......... .......... 4921 .......... .......... .......... .......... .......... .......... 4981 .......... .......... .......... .......... .......... .......... 5041 .......... .......... .......... .......... .......... .......... 5101 .......... .......... .......... .......... .......... .......... 5161 .......... .......... .......... .......... .......... .......... 5221 .......... .......... .......... .......... .......... .......... 5281 .......... .......... .......... .......... .......... .......... 5341 .......... .......... .......... .......... .......... .......... 5401 .......... .......... .......... .......... .......... .......... 5461 .......... .......... .......... .......... .......... .......... 5521 .......... .......... .......... .-........ .......... .......... 5581 .......... .......... .......... .......... .......... .......... 5641 .......... .......... .......... .......... .......... .......... 5701 .......... .......... .......... .......... .......... .......... 5761 .......... .......... .......... .......... .......... .......... 5821 .......... .......... .......... .......... .......... .......... 5881 .......... ........|| ||| // LOCUS N.necatrix 5903 bp RNA RNA 11-JAN-191 DEFINITION Nosema necatrix. ACCESSION No information KEYWORDS No information. SOURCE Nosema necatrix. ORGANISM Nosema necatrix. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: U11051 LOCUS NNECSRRN 1247 bp DNA INV 06-JUL-1994 DEFINITION Nosema necatrix ATCC 30460 16S ribosomal RNA gene. ACCESSION U11051 KEYWORDS . SOURCE Nosema necatrix ORGANISM Nosema necatrix Eukaryotae; Hypochondria; Microspora; Microsporea; Microsporida; Apansporoblastina; Nosematidae; Nosema. REFERENCE 1 (bases 1 to 1247) AUTHORS Da Silva,A.J., Slemenda,S.B. and Pieniazek,N.J. TITLE Small Subunit rRNA Sequence of Nosema necatrix (Microsporida), ATCC 30460 JOURNAL Unpublished STANDARD full automatic REFERENCE 2 (bases 1 to 1247) AUTHORS Pieniazek,N.J. TITLE Direct Submission JOURNAL Submitted (20-JUN-1994) Pieniazek N. J., Centers for Disease Control, Division of Parasitic Diseases, 4770 Buford Highway NE, Atlanta, GA 30341-3724, USA STANDARD full automatic COMMENT NCBI gi: 507916 FEATURES Location/Qualifiers rRNA 1..1247 /product="16S ribosomal RNA" primer_bind 1..21 /note="PCR primer based on V. necatrix SSU-rRNA; putative" primer_bind complement(1221..1247) /note="PCR primer based on V. necatrix SSU-rRNA; putative" source 1..1247 /strain="ATCC 30460" /organism="Nosema necatrix" BASE COUNT 405 a 171 c 291 g 380 t ORIGIN BASE COUNT 405 a 171 c 291 g 380 t 4656 others ORIGIN 1 |~~~~~~~~~ ~~~~~CACCA GGU(UGA)UU CU|GCCUGA- C-GU-A-GAC --GCUAUUCC 61 CUAA|-GAUU AA-CCCAUGC A-UGU---UU UU|------- |-------(- ---)[----- 121 ---------- ---------- ---ga----- ---------- -------uau gga]------ 181 -----|---A AA|A-UGGA- CUGCU-CAGU AAUA-CUCA- CUU-UAUU-- ----UAAUGU 241 AUUA<----- ---------- ---------- ---------- ---------- ---------- 301 a>AUUAGU-A UAACUGCGU( -U-A-AA)GU GUAGCaUAA- GAC------- ----(----) 361 ---------- -------(-- --)--|---- --<------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ------|--- ---------- ---------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 ---------- ---------- ---------- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- ---------- ---------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 ---------- ---------- ---------- ---------- ---------- ---------- 1021 -|-------- ---------- ---------- ---------- ---------- ---------- 1081 ---------> -AUAUACAGU -AA|GAGUGA GA|--CCU-A UCA--GCUA- --GUUGUUA- 1141 AG(-GUAAUG G)CUU-AACA A-|GGCAA-U GAC|GGGU-A A-CGGU|AUU -A-(CUUUG) 1201 UAA-U-AUU- CCG|GAGAAG G-AGC(CU-G AGAGACG)GC UACU-AAGUC (UAAG-)GAU 1261 -UGCAGC-A- ---------| GGG-GC-GA- AACUU-GACC -UAUGGA-U( ---uuu--)A 1321 UCUG-A-GGC -|A|GUUAUG GGAA-GU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 -----<---- ---------a aua(-----u ucuau)uguu ---------- ---------- 1501 ---------u -cau---auu -----guaaa --------ag uauaugaggu gauu->AAUU 1561 GGAG|GG-CA A-AU-C-AAG U-G(CCA-GC -AGCC|GC-G GU-AA)UACU UG-|UUCCAA 1621 G-AGUGUG|U AUGAU--GAU UGAUG-CAG| UUA--AAAAG UCCGUAGUUU |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---auauuua ag--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -AAGC|AAUA ---------- 3001 --UGAGGUGU AC|--UGUAU AGUUGGG-AG -AGAG(AU-G AAA---)UGU G-ACGA-C-C 3061 CUGAC-UGG- A-CGAACA-G AAGC(-GAAA )--GC|U--- GUACAC-UU| GU-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUG ---UAUUUUU -UGA-A|CA- A-GGACGUAA 3301 GCUGGAGGA- GCGAAGAUG( AUUA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CA-U -UGUAG|UUC CA--GCA-GU AAACUAUGCC GAC|GA|--- 3421 --uguga-ua uga-u----- ----(----- auua-----) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- a-uu-gua-u -u-agau--- ---------- ----gaUA(- 3661 GAAA-)UUU- -GAGUUU-UU UGGC|-U|C- UGGGGAUAGU AU--GA-UC( --GCAA-)GA 3721 UUG-AAAAUU -AAAG--AAA -UUG|AC-GG -AA-GAAUA- -CCAC-AAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --A-GU|-GG 4021 AUUGUGCG|G CU-UAAUUUG (ACUCAA-CG )CGAG--GUA ACUUACCAAU AU[u---uua 4081 uuau-ucaga ga-------- aga(uuuau- a-a)------ ucu------- -ga-gaa--u 4141 gau-aa---- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UA-GU- GGU-G-CAUG |GCC|GU-UU UCA|AUGGA- U|GCU(-GUG 4261 A-)AGU-UU- -UGA(UU-AA UU)UCAACA- AG-ACGUGAG ACCCU-UU|- ---------- 4321 ------(--- --)[ua---- ---------- ---------- ---------u uaa------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- ---------- ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ------ua]- --|------- ---------- GACA-GAC-A -C--(----- 5041 ---AAUCA)- GUGU-A-GGA AGGA-AAGGA UUAAAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CCG-UU A|UGCC|CU- 5221 C-AGA-CAUU UUGG-GCUGC A-CGCGCAAU ACAAU--A-g au-------- ---------- 5281 ---(-auaua ----)[---- ---------- ---------- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- ---------- ---------- 5401 ---------- ---(-----) ---------- ---------- ------]--- ---------- 5461 ---------a u-c-u----- -UUA-U-GGG AUAAUAUUU( UGUAA--G)A GAUAUUUG-A 5521 ACUUGG-AAU U--GCUAGUA AA-UUU-UAU (-UAAAUAA- )GUAGA-A-U -UGAAUGUG- 5581 U-CCCUGUUC UU|UGUA-CA CACCGCCCGU CGCUAU-C-U AA-GAU---G AU-AUGU--- 5641 guu-gugaa- -auuagu--- ---------- ---------- ---------- ---------- 5701 -------(ga aa----)--- ---------- ---------- ---------- ---------- 5761 ---------- ---ac-|ua- -cuugaacAA U--aug-u-a uUAG-AUCUG AU-AUAA-G- 5821 UCGUAACAUG GU-------- -----U-G-C UGUUGG(AGA A)CCAUUAGC AGGAUCA--- 5881 --uaa----- -------~|| ||| // LOCUS Ent.bien.1 5903 bp RNA RNA 11-JAN-191 DEFINITION Enterocytozoon bieneusi. ACCESSION No information KEYWORDS No information. SOURCE Enterocytozoon bieneusi. ORGANISM Enterocytozoon bieneusi. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: L07123 LOCUS ENZEB 1250 bp ds-DNA INV 15-MAR-1993 DEFINITION Enterocytozoon bienusi DNA sequence. ACCESSION L07123 KEYWORDS . SOURCE Enterocytozoon bienusi (individual_isolate PL) DNA. ORGANISM Enterocytozoon bienusi Eukaryota; Animalia; Protozoa; Microspora; Microsporea; Microsporida; Apansporoblasina; Enterocytozoonidae. REFERENCE 1 (bases 1 to 1250) AUTHORS Zhu,X., Tanowitz,H.B., Cali,A., Wittner,M. and Weiss,L.M. TITLE Small subunit rRNA sequences of Entercytozoon bienusi and its potential diagnostic role JOURNAL Unpublished (1993) STANDARD full automatic COMMENT *natural host = Human tissue type = intestinal epithelial lining cell type = enterocyte. BASE COUNT 346 a 245 c 361 g 298 t ORIGIN BASE COUNT 346 a 245 c 361 g 298 t 4653 others ORIGIN 1 |~~~~~~~~~ ~~~~~CACCA GGU(UGA)UU CU|GCCUGA- C-GU-A-GAU --GCUAGUCU 61 CUGA|-GAUU AA-GCCAUGC A-UGU---CA GU|------- |-------(- ---)[----- 121 ---------- ---------- ---gaagcc- ---------- --uua-cggu gga]------ 181 -----|---A CG|G-CGAA- CGGCU-CAGU AAUG-UUGC- GGU-AAUU-- ----UGGUCU 241 CUGU<----- ---------- ---------- ---------- ---------- ---------- 301 g>uguaaa-C UAACCACGG( -U-A-AC)CU GUGGC-uaa- aa-------- ----(----) 361 ---------- -------(-- --)--|---- --<------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ------|--- ---------- ---------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 ---------- ---------- ---------- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- ---------- ---------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 ---------- ---------- ---------- ---------- ---------- ---------- 1021 -|-------- ---------- ---------- ---------- ---------- ---------- 1081 ---------> -GCGGGGAAU -AA|GGCGCA AC|--CCU-A UCA--GCUU- --GUUGGUA- 1141 GU(-GUAAAG G)ACU-ACCA A-|GGCCA-U GAC|GGGU-A A-CGGG|AAA -U-(CAGG-) 1201 GUU-UGGUU- CCG|GAGAGG G-AGC(CU-G AGAGAUG)GC UCCC-ACGUC (CAAG-)GAC 1261 -GGCAGC-A- ---------| GGC-GC-GA- AACUU-GUCC -ACUCCU--( --uac---)- 1321 AGGAGA-GAC -|A|GUCAUG AGAC-GU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 -----<---- ---------- ---------- ---------- ---------- ------gagu 1501 ---auaac-- -acc-ugagu -----guaaa g-------ac cuuaggguga agc-->AAUU 1561 GGAG|GG-CA A-GCUU-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)CUCC AA-|CUCCAA 1621 G-AGUGUC|U AUGGU--GGA UGCUG-CAG| UUA--AAGGG UCCGUAGUCG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ---------- 2821 ---ugaaaug --c-guuguu caauagcg-a ugaguuugcu --aaucuuug c---->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGAa|cGga ---------- 3001 --UAGGGAGU GU|--AGUAU AGACUGG-CG -AAGA(AU-G AAA---)UCU C-AAGA-C-C 3061 CAGUU-UAG- G-ac--ua-C GAGC(-GAAG )--GC|G--- ACACUC-UU| AG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------ACG ---UAUCUUA -GGA-U|CA- A-GGACGAAG 3301 GCAGGAGUA- CCGAAAGUG( AUUA------ ---------- ---------- ---------- 3361 ---------- GACAC)CG-C -UGUAG|UUC CU--GCA-GU AAACUAUGCC GAC|AG|--- 3421 --ccugu-gu gu-------- ----(----- gaga-----) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---a-uac-g -u-gggc--- ---------- ----GGGA(- 3661 GAAA-)UCU- -uAGUGU-UC GGGC|-U|C- UGGGGAUAGU AC--GC-UC( --GCAA-)GG 3721 GUG-AAACUU -AAAGcgAAA -UUG|AC-GG -AA-GGACA- -CUAC-CAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --A-GU|-GG 4021 AUUGUGCU|G CU-UAAUUUA (ACUCAA-CG )CGGG--AAA ACUUACCAGG GU[caa--gu 4081 cauucg---- -------uu- gg--aucgaa u--------a cgu------- ----gag--a 4141 auggcag--- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|GA-GU- GGU-G-CAUG |GCC|GU-UG GAA|AUUGA- U|Gg-(-gc- 4261 a-)-cc-UU- -UAG(CU-UA AA)UGCUUA- AC-CAGUGAG ACCUC-CU|- ---------- 4321 ------(--- --)[------ ---------- ---------- ---------- -u-------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- ---------- ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- --------]- --|------- ---------- GCAC-GGU-G -U-U(----- 5041 ---cugu-)A ACAC-A-GGA GGGU-GGAGG CUAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CCG-UG A|UGCC|CU- 5221 U-AGA-UAUC CUGG-GCAGC A-AGCGCAAU ACAAU--A-- cucuuca--- ---------- 5281 ---(guagac aaag)[---- ---------- ---------- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- ---------- ---------- 5401 ---------- ---(-----) ---------- ---------- ------]--- ---------- 5461 --ugauuuga --gaU----- -GAG-U-AGG AUCUACGUU( UGUAA--A)U ACGUAGUG-A 5521 AUAAGG-AAU U--CCUAGUA AC-GGU-GCC (-UCAUCAA- )GGCAU-U-G -UGAAUGUG- 5581 U-CCCUGUUC UU|UGUA-CA CACCGCCCGU CACUAU-U-U CA-GAU---G GU-CAUA--- 5641 ggg-augaa- -gagc----- ---------- ---------- ---------- ---------- 5701 -------(uu cg----)--- ---------- ---------- ---------- ---------- 5761 ---------- ------|gc- -ucugaauau c--uau-g-g cUAG-AUAAA GU-ACAA-G- 5821 UCGUAACAAG GU-------- -----A-A-N NNNNNN(NNN N)NNNNNNNN NNNNNNN--- 5881 --nnn~~~~~ ~~~~~~~~|| ||| // LOCUS Ent.bien.2 5903 bp RNA RNA 11-JAN-191 DEFINITION Enterocytozoon bieneusi. ACCESSION No information KEYWORDS No information. SOURCE Enterocytozoon bieneusi. ORGANISM Enterocytozoon bieneusi. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: L16868 LOCUS EZORGA 1294 bp ds-DNA INV 02-AUG-1993 DEFINITION Enterocytozoon bieneusi ribosomal RNA gene sequence. ACCESSION L16868 KEYWORDS ribosomal RNA. SOURCE Enterocytozoon bieneusi (individual_isolate M6) DNA. ORGANISM Enterocytozoon bieneusi Eukaryota; Animalia; Protozoa; Microspora; Haplophasea; Glugeida; Encephalitozoonidae. REFERENCE 1 (bases 1 to 1294) AUTHORS Hartskeerl,R.A., Schuitema,A.R., Van Gool,T. and Terpstra,W.J. TITLE Genetic evidence for the occurrence of extra-intestinal Enterocytozoon bieneusi infections JOURNAL Unpublished (1993) STANDARD full automatic REFERENCE 2 (bases 1 to 1294) AUTHORS Hartskeerl,R.A. TITLE Direct Submission JOURNAL Submission received (May 18 1993) via Authorin E-mail by Genbank STANDARD full automatic FEATURES Location/Qualifiers primer_bind 1..23 /note="based on V. necatrix srRNA sequence; putative" rRNA 1..1294 /note="putative" primer_bind complement(1271..1294) /note="based on V. necatrix srRNA sequence; putative" source 1..1294 /organism="Encephalitozoon bieneusi" /isolate="M6" /sequenced_mol="DNA" BASE COUNT 361 a 247 c 375 g 311 t ORIGIN BASE COUNT 361 a 247 c 375 g 311 t 4609 others ORIGIN 1 |~~~~~~~~~ ~~~~~CACCA GGU(UGA)UU CU|GCCUGA- C-GU-A-GAU --GCUAGUCU 61 CUGA|-GAUU AA-GCCAUGC A-UGU---CA GU|------- |-------(- ---)[----- 121 ---------- ---------- ---gaagcc- ---------- --uua-cggu gga]------ 181 -----|---A CG|G-CGAA- CGGCU-CAGU AAUG-UUGC- GGU-AAUU-- ----UGGUCU 241 CUGU<----- ---------- ---------- ---------- ---------- ---------- 301 g>uguaaa-C UAACCACGG( -U-A-AC)CU GUGGC-uaa- aa-------- ----(----) 361 ---------- -------(-- --)--|---- --<------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ------|--- ---------- ---------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 ---------- ---------- ---------- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- ---------- ---------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 ---------- ---------- ---------- ---------- ---------- ---------- 1021 -|-------- ---------- ---------- ---------- ---------- ---------- 1081 ---------> -GCGGAGAAU -AA|GGCGCA AC|--CCU-A UCA--GCUU- --GUUGGUA- 1141 GU(-GUAAAG G)ACU-ACCA A-|GGCCA-U GAC|GGGU-A A-CGGG|AAA -U-(CAGG-) 1201 GUU-UGAUU- CCG|GAGAGG G-AGC(CU-G AGAGAUG)GC UCCC-ACGUC (CAAG-)GAC 1261 -GGCAGC-A- ---------| GGC-GC-GA- AACUU-GUCC -ACUCCU--( --uacg--)- 1321 GGGG-A-GAC -|A|GUCAUG AGAC-GU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 -----<---- ---------- ---------- ---------- ---------- ------gagu 1501 ---auaag-- -acc-ugagu -----guaaa g-------ac cuuaggguga agc-->AAUU 1561 GGAG|GG-CA A-GCUU-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)CUCC AA-|CUCCAA 1621 G-AGUGUC|U AUGGU--GGA UGCUG-CAG| UUA--AAGGG UCCGUAGUCG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ugaau--gca 2821 -a-uuaaaug -uc-guuguu caauagcg-a ugaguuugcu --aauguuug c---->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGAa|cGga ---------- 3001 --UAGGGAGU GU|--AGUAU AGACUGG-CG -AAGA(AU-G AAA---)UCU C-AAGA-C-C 3061 CAGUU-UGG- A-CUAACG-G AGGC(-GAAG )--GC|G--- ACACUC-UU| AG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------ACG ---UAUCUUA -GGA-U|CA- A-GGACGAAG 3301 GCAGGAGUA- UCGAAAGUG( AUUA------ ---------- ---------- ---------- 3361 ---------- GACAC)CG-C -UGUAG|UUC CU--GCA-GU AAACUAUGCC GAC|AG|--- 3421 --ccugu-gu gu-------- ----(----- gaga-----) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---a-uac-g -u-gggc--- ---------- ----GGGA(- 3661 GAAA-)UCU- -uAGUGU-UC GGGC|-U|C- UGGGGAUAGU AC--GC-UC( --GCAA-)GG 3721 GUG-AAACUU -AAAGcgAAA -UUG|AC-GG -AA-GGACA- -CUAC-CAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --A-GU|-GG 4021 AUUGUGCU|G CU-UAAUUUA (ACUCAA-CG )CGGG--AAA ACUUACCAGG GU[caa--gu 4081 cauucg---- -------uu- g---aucgaa u--------a cgu------- ----gag--a 4141 auggcag--- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|GA-GU- GGU-G-CAUG |GCC|GU-UG GAA|AUUGA- U|GGG(-GCG 4261 A-)CCU-UU- -AGC(UU-AA AU)GCUUAA- AC-CAGUGAG ACCUC-CU|- ---------- 4321 ------(--- --)[------ ---------- ---------- ---------- -u-------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- ---------- ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- --------]- --|------- ---------- GACA-GGU-G -U-U(----- 5041 ---cugu-)A ACAC-A-GGA GGGU-GGAGG CUAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CCG-UG A|UGCC|CU- 5221 U-AGA-UAUC CUGG-GCAGC A-AGCGCAAU ACAAU--A-u cucuuca--- ---------- 5281 ---(guagac aaag)[---- ---------- ---------- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- ---------- ---------- 5401 ---------- ---(-----) ---------- ---------- ------]--- ---------- 5461 --ugauuuga g-a-u----- -GAG-U-AGG AUCUACGUU( UGUAA--A)U ACGUAGUG-A 5521 AUAAGG-AAU U--CCUAGUA AC-GGU-GCC (-UCAUCAA- )GGCAU-G-G -UGAAUGUG- 5581 U-CCCUGUUC UU|UGUA-CA CACCGCCCGU CACUAU-U-U CA-GAU---G GU-CAUA--- 5641 ggg-augaa- -gagc----- ---------- ---------- ---------- ---------- 5701 -------(uu cg----)--- ---------- ---------- ---------- ---------- 5761 ---------- ------|gc- -ucugaauau c--uau-g-g cUAG-AUAAA GU-ACAA-G- 5821 UCGUAACAAG GU-------- -----U-U-C AGUUGG(AGA A)CCAUUAGC AGGAUCA--- 5881 --UAA~~~~~ ~~~~~~~~|| ||| // LOCUS Nos.apis.1 5903 bp RNA RNA 11-JAN-191 DEFINITION Nosema apis. ACCESSION No information KEYWORDS No information. SOURCE Nosema apis. ORGANISM Nosema apis. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: X73894 ID NARRNA standard; DNA; INV; 1198 BP. XX AC X73894; XX DT 30-JUN-1994 (Rel. 40, Created) DT 13-JUL-1994 (Rel. 40, Last updated, Version 4) XX DE N.apis gene for small subunit rRNA XX KW small subunit ribosomal RNA. XX OS Nosema apis OC Eukaryota; Animalia; Protozoa; Microspora; Microsporea; OC Microsporida; Apansporoblastina; Nosematidae. XX RN [1] RA Malone L.A., Broadwell A.H., McIvor C.A., Lindridge E.T., RA Ninham J.; RT "Ribosomal RNA genes of two of two microsporidian species, Nosema RT apis and Varaia oncoperae are very variable"; RL J. Invertebr. Pathol. 64:0-0(1994). XX RN [2] RP 1-1198 RA Malone L.A.; RT ; RL Submitted (05-JUL-1993) to the EMBL/GenBank/DDBJ databases. RL L.A. Malone, Horticulture & Food Research Institute of NZ Ltd, MT RL Albert Research Centre, Private Bag 92169, Auckland, NEW ZEALAND XX RN [3] RP 1-1198 RA Malone L.A., Broadwell A.H., Lindridge E.T., McIvor C.A., RA Ninham J.; RT "Ribosomal RNA genes of two microsporidia, Nosema apis and Vavraia RT oncoperae are very variable"; RL J. Invertebr. Pathol. 64:0-0(1994). XX FH Key Location/Qualifiers FH FT source 1..1198 FT /organism="Nosema apis" FT /dev_stage="spore" XX SQ Sequence 1198 BP; 372 A; 173 C; 288 G; 365 T; 0 other; BASE COUNT 372 a 173 c 288 g 365 t 4705 others ORIGIN 1 |~~~~~~~~~ ~~~~~NNNNN NNN(NNN)NN NN|NNNNGA- C-GU-A-GAC --GCUAUUCC 61 CUAA|-GAUU GG-CCCAUGC A-UGU---UU UU|------- |-------(- ---)[----- 121 ---------- ---------- --gacguac- ---------- --uau-guac uga]------ 181 -----|---A AG|A-UGGA- CUGCU-CAGU AAUA-CUCA- CUU-UAUU-- ----UGAUGU 241 ACCU<----- ---------- ---------- ---------- ---------- ---------- 301 ->uauac--A UAACUACGU( -U-A-AA)GU GUAGC-UAA- CAu------- ----(----) 361 ---------- -------(-- --)--|---- --<------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ------|--- ---------- ---------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 ---------- ---------- ---------- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- ---------- ---------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 ---------- ---------- ---------- ---------- ---------- ---------- 1021 -|-------- ---------- ---------- ---------- ---------- ---------- 1081 ---------> -AUGUACAGU -AA|GAGUGA GA|--CCU-A UCA--GCUA- --GUUGUUA- 1141 AG(-GUAAUG G)CUU-AACA A-|GGCAA-U AAC|GGGU-A A-CGGU|AUU -A-(CUUUG) 1201 UAA-U-AUU- CCG|GAGAAG G-AGC(CU-G AGAGACG)GC UACU-AAGUC (UAAG-)GAU 1261 -UGCAGC-A- ---------| GGG-GC-GA- AACUU-GACC -UAUGGA-U( --auu---)A 1321 UCUG-A-GGC -|A|GUUAUG GGAA-GU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 -----<---- ---------- ---------- ---------- ---------- ----aacaua 1501 ---guuguuu -cac---auu -----uuaaa c--------g uaugugagca gauu->AAUU 1561 GGAG|GG-CA A-AU-C-GAG U-G(CCA-GC -AGCC|GC-G GU-AA)UACU UG-|UUCCAA 1621 G-AGUGUG|U AUGAU--GAU UGAUG-CAG| UUA--AAAAG UCCGUAGUUU |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---auuauua ag--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -aagc|aAua ---------- 3001 --UGAGGUGU AC|--UGUAU AGUUGGG-AG -AGAG(AU-G AAA---)UGU G-ACGA-C-C 3061 CUGAC-UGG- A-CGAACU-G AAGC(-GAAA )--GC|U--- GUACAC-UU| GU-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUG ---UAUUUUU -UGA-A|CA- A-GGACGUAA 3301 GCUGGAGGA- UCGAAGAUG( AUUA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CA-U -UGUAG|UUC CA--GCA-GU AAACUAUGCC GAC|GA|--- 3421 --uguga-ua uga------- ----(----- -gaug----) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- --uu-gua-u -u-acau--- ---------- ----UAUA(- 3661 GAAA-)UUA- -GAGUUU-UU UGGC|-U|C- UGGGGAUAGU AU--GA-UC( --GCAA-)GA 3721 UUG-AAAAUU -AAAG--AAA -UUG|AC-GG -AA-GAAUA- -CCAC-AAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --A-GU|-GG 4021 AUUGUGCG|G CU-UAAUUUG (ACUCAA-CG )CGAG--GUA ACUUACCAAU AU[u---uua 4081 uugu-ucugc ga-------- gga(--uaug a--)------ ucu------- -ga-gga--u 4141 gau-aa---- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UA-GU- GGU-G-CAUG |GCC|GU-UU UCA|AUGGA- U|GCU(-GUG 4261 A-)AGU-UU- -UGA(UU-AA UU)UCAACA- AG-ACGUGAG ACCCU-UU|- ---------- 4321 ------(--- --)[------ ---------- ---------- ---------- auua------ 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- ---------- ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- --------]- --|------- ---------- GACU-GAC-A -C-U(----- 5041 ----auu-)A GUGU-A-GGA AGGA-AAGGA CUAAAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CAG-UU A|UGCC|CU- 5221 C-UGA-CAUU UUGG-GCAGC A-CGCGCAAU ACAAU--a-g a--------- ---------- 5281 ---(-cuuua a---)[---- ---------- ---------- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- ---------- ---------- 5401 ---------- ---(-----) ---------- ---------- ------]--- ---------- 5461 ---------- u-c-u----- -UUA-U-GGG AUAAUAUUU( UGUAA--G)A GAUAUUUG-A 5521 ACUUGG-AAU U--GCUAGUA AA-UUU-UAU (-UAAAUAA- )GUAGA-A-U -UGAAUGUG- 5581 U-CCCUGUUC UU|UGUA-CA CACCGCCCGU CGCUAU-C-U AA-GAU---G AU-AUGU--- 5641 guu-gugaa- -auuagu--- ---------- ---------- ---------- ---------- 5701 -------(gc aa----)--- ---------- ---------- ---------- ---------- 5761 ---------- ------|gcu acuugaacaa u--aug-u-a uUAG-AUCUG AU-AUAA-G- 5821 UCGUAACAUG GU-------- -----U-G-C UGUNNN(NNN N)NNNNN-NN NNNNNNN--- 5881 --NNN~~~~~ ~~~~~~~~|| ||| // LOCUS Nos.apis.2 5903 bp RNA RNA 11-JAN-191 DEFINITION Nosema apis. ACCESSION No information KEYWORDS No information. SOURCE Nosema apis. ORGANISM Nosema apis. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: U26534 LOCUS NAU26534 1242 bp DNA INV 12-JUN-1995 DEFINITION Nosema apis small subunit ribosomal RNA gene. ACCESSION U26534 KEYWORDS . SOURCE Nosema apis. ORGANISM Nosema apis Eukaryotae; Microsporidia; Microsporea; Microsporida; Apansporoblastina; Nosematidae; Nosema. REFERENCE 1 (bases 1 to 1242) AUTHORS Pieniazek,N.J., Kurtti,T.J., Fries,I., da Silva,A.J., Slemenda,S.B., Gutell,R.R., Ditrich,O. and Lom,J. TITLE Molecular taxonomy of Nosema apis (Microsporidia, Nosematidae) JOURNAL Unpublished REFERENCE 2 (bases 1 to 1242) AUTHORS Pieniazek,N.J. TITLE Direct Submission JOURNAL Submitted (08-MAY-1995) Norman J. Pieniazek, Centers for Disease Control, Division of Parasitic Diseases, 4770 Buford Highway NE, Atlanta, GA 30341-3724, USA COMMENT NCBI gi: 857487 FEATURES Location/Qualifiers source 1..1242 /isolate="UMSP, received from Dr. Timothy J. Kurtti, and Uppsala, received from Dr. Ingemar Fries" /organism="Nosema apis" /specific_host="Apis mellifera" /note="sequence for isolates UMSP and Uppsala was identical" rRNA 1..1242 /note="small subunit ribosomal RNA, SSU-rRNA" /product="16S ribosomal RNA" primer_bind 1..21 /note="sequence derived from PCR primer binding region" primer_bind complement(1216..1242) /note="sequence derived from PCR primer binding region" BASE COUNT 387 a 183 c 297 g 375 t ORIGIN BASE COUNT 387 a 183 c 297 g 375 t 4661 others ORIGIN 1 |~~~~~~~~~ ~~~~~CACCA GGU(UGA)UU CU|GCCUGA- C-GU-A-GAC --GCUAUUCC 61 CUAA|-GAUU AA-CCCAUGC A-UGU---CU UU|------- |-------(- ---)[----- 121 ---------- ---------- ---gacguac ---------- --uau-guac uga]------ 181 -----|---A AG|A-UGGA- CUGCU-CAGU AAUA-CUCA- CUU-UAUU-- ----UGAUGU 241 ACAU<----- ---------- ---------- ---------- ---------- ---------- 301 ->-uauac-A UAACUACGU( -U-A-AA)GU GUAGC-UAA- caua------ ----(----) 361 ---------- -------(-- --)--|---- --<------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ------|--- ---------- ---------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 ---------- ---------- ---------- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- ---------- ---------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 ---------- ---------- ---------- ---------- ---------- ---------- 1021 -|-------- ---------- ---------- ---------- ---------- ---------- 1081 ---------> --UGUACAGU -AA|GAGUGA GA|--CCU-A UCA--GCUA- --GUUGUUA- 1141 AG(-GUAAUG G)CUU-AACA A-|GGCAA-U AAC|GGGU-A A-CGGU|AUU -A-(CUUUG) 1201 UAA-U-AUU- CCG|GAGAAG G-AGC(CU-G AGAGACG)GC UACU-AAGUC (UAAG-)GAU 1261 -UGCAGC-A- ---------| GGG-GC-GA- AACUU-GACC -UAUGGA-U( ---auu--)A 1321 UCUG-A-GGC -|A|GUUAUG GGAA-GU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 -----<---- ---------a aca(------ ua-gu)uguu ---------- ---------- 1501 ---------u -cac---auu -----uuaaa --------cg uaugugagca gauu->AAUU 1561 GGAG|GG-CA A-AU-C-GAG U-G(CCA-GC -AGCC|GC-G GU-AA)UACU UG-|UUCCAA 1621 G-AGUGUG|U AUGAU--GAU UGAUG-CAG| UUA--AAAAG UCCGUAGUUU |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---auuguua ag--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -AAGc|aAua ---------- 3001 --UGAGGUGU AC|--UGUAU AGUUGGG-AG -AGAG(AU-G AAA---)UGU G-ACGA-C-C 3061 CUGAC-UGG- A-CGAACU-G AAGC(-GAAA )--GC|U--- GUACAC-UU| GU-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUG ---UAUUUUU -UGA-A|CA- A-GGACGUAA 3301 GCUGGAGGA- UCGAAGAUG( AUUA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CA-U -UGUAG|UUC CA--GCA-GU AAACUAUGCC GAC|GA|--- 3421 --uguga-ua uga------- ----(----- gaug-----) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- --uu-gua-u -u-acau--- ---------- ----uaUA(- 3661 GAAA-)UUA- -GAGUUU-UU UGGC|-U|C- UGGGGAUAGU AU--GA-UC( --GCAA-)GA 3721 UUG-AAAAUU -AAAG--AAA -UUG|AC-GG -AA-GAAUA- -CCAC-AAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --A-GU|-GG 4021 AUUGUGCG|G CU-UAAUUUG (ACUCAA-CG )CGAG--GUA ACUUACCAAU AU[u---uua 4081 uugu-ucugc ga-------- gga(-uauga ---)------ ucu------- -ga-gga--u 4141 gau-aa---- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UA-GU- GGU-G-CAUG |GCC|GU-UU UCA|AUGGA- U|GCU(-GUG 4261 A-)AGU-UU- -UGA(UU-AA UU)UCAACA- AG-ACGUGAG ACCCU-UU|- ---------- 4321 ------(--- --)[a----- ---------- ---------- ---------u uaga-c---- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- ---------- ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- -------u]- --|------- ---------- GACA-C---- -U-A(----- 5041 ---uuag-)U G--U-A-GGA AGGA-AAGGA CUAAAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CAG-UU A|UGCC|CU- 5221 C-UGA-CAUU UUGG-GCAGC A-CGCGCAAU ACAAU--a-g a--------- ---------- 5281 ---(-cuuua a---)[---- ---------- ---------- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- ---------- ---------- 5401 ---------- ---(-----) ---------- ---------- ------]--- ---------- 5461 ---------- u-c-u----- -UUA-U-GGG AUAAUAUUU( UGUAA--G)A GAUAUUUG-A 5521 ACUUGG-AAU U--GCUAGUA AA-UUU-UAU (-UAAAUAA- )GUAGA-A-U -UGAAUGUG- 5581 U-CCCUGUUC UU|UGUA-CA CACCGCCCGU CGCUAU-C-U AA-GAU---G AU-AUGU--- 5641 guu-gugaa- -auuagu--- ---------- ---------- ---------- ---------- 5701 -------(gc aa----)--- ---------- ---------- ---------- ---------- 5761 ---------- ---gc-|ua- -cuugaacAA U--aug-u-a uUAG-AUCUG AU-AUAA-G- 5821 UCGUAACAUG GU-------- -----U-G-C UGUUGG(AGA A)CCAUUAGC AGGAUCA--- 5881 --UAA~~~~~ ~~~~~~~~|| ||| // LOCUS Nos.bomb.1 5903 bp RNA RNA 29-MAY-1996 DEFINITION Nosema bombycis.; . ACCESSION D85504 KEYWORDS . SOURCE Nosema bombycis. ORGANISM Nosema bombycis. REFERENCE 1 (bases 1 to 1232) AUTHORS Inoue,T. TITLE Direct Submission JOURNAL Kanagawa 252, Japan (E-mail:tinoue@ddbj.nig.ac.jp, Tel : 0466-83-2563(ex.401), Fax:0466-83-2573) Submitted (21-MAY-1996) to the DDBJ/EMBL/GenBank databases. Tadashi Inoue, Lab. Nucleic Acid Science,, College of Bioresource Sciences, Nihon Univ.; Kameino 1866, Fujisawa, STANDARD No information REFERENCE 2 (sites) AUTHORS Hatakeyama,Y., Kawakami,Y., Iwano,H., Inoue,T. and Ishihara,R. TITLE Comparison of secondary strucutres of smal subunit ribosomal RNA from five microsporidia pathogenic to the silk worm, Bombyx mori JOURNAL Unpublished (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: D85504 BASE COUNT 428 a 156 c 267 g 381 t 4671 others ORIGIN 1 |~~~~~~~~~ ~~~~~CACCA GGU(UGA)UU CU|GCCUGA- C-GU-A-GAC --GCUAUACU 61 CUAA|-GAUU AA-CCCAUGC A-UGU---UU AU|------- |-------(- ---)[----- 121 ---------- ---------- --ugaauaua ---------- --------aa gaa]------ 181 -----|---a ag|a-cgaa- CAGCU-CAGU AACu-cuUA- UUU-GAUU-- ----UGAUGU 241 auua<----- ---------- ---------- ---------- ---------- ---------- 301 ->ggauu--C UAACUAUGU( -U-A-AA)UU AUAGG-UAA- CA-------- ----(----) 361 ---------- -------(-- --)--|---- --<------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ------|--- ---------- ---------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 ---------- ---------- ---------- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- ---------- ---------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 ---------- ---------- ---------- ---------- ---------- ---------- 1021 -|-------- ---------- ---------- ---------- ---------- ---------- 1081 ---------> AUAAUACAAU -AA|GAAUAA GA|--UCU-A UCA--GUUA- --GUUGUUA- 1141 AG(-GUAAUG G)CUU-AACA A-|GACUA-U GAC|GGAU-A A-CGGU|AUU -A-(CUUUG) 1201 UAA-U-AUU- CCG|GAGAAG G-AGC(CU-G AGAGAUU)GC UACU-AAGUC (UAAG-)GAU 1261 -UGCAGC-A- ---------| GGG-GC-GA- AACUU-GACC -UAUGAU-A( --UUA---)U 1321 AUUG-A-GGC -|A|GUUAUG AGUA-GU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 -----<---- ---------- ---------- ---------- ---------- -auuuuauaa 1501 ---uuauugu -agu---auu -----guaag u--------a cauauuacaa gaua->AAUC 1561 GGAG|GG-CA A-AU-C-GAG U-G(CCA-GC -AGCC|GC-G GU-AA)UACU UG-|UUCCGA 1621 U-AGUGUG|U AUGAU--GAU UGAUG-CAG| UUA--AAAAG UCUGUAGUUU |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---auuuaua au--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -aagc|auug ---------- 3001 --UAAGGUAU AC|--UGUAU GGUUAGG-AG -AGAG(AU-G AAA---)UGU G-AUAA-C-C 3061 CUAAC-UGG- A-UGAACA-G AAGC(-GAAA )--GC|U--- GUAUAC-UU| AA-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUG ---UAUUAUU -AGA-A|CA- A-GGACGUAA 3301 GCUAGAGGA- UCGAAGAUG( AUUA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CA-U -UGUAG|UUC UA--GCA-GU AAACUAUGUU GAA|UC|--- 3421 --auaga-ua uau------- ----(----u uugau----) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- --au-aua-u -u-uaug--- ---------- ----UAGA(- 3661 GAAA-)UUAA -GAUUAU-AU UGAC|-U|C- UGGGGAUAGU AU--GA-UC( --GCAA-)GA 3721 UUG-AAAAUU -AAAG--AAA -UUG|AC-GG -AA-GAAUA- -CCAC-AAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --A-GU|-GG 4021 AUUGUGCG|G CU-UAAUUUG (ACUCAA-CG )CGGG--GUA AUUUACCAGG UA[uaa---- 4081 caugaua--- ---------- ---(uaauau u-u)------ ---------- ----uau--c 4141 aug-a----- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UA-GU- GGU-G-CAUG |GCC|GU-UU CCA|AUGGA- U|GCU(-GUG 4261 A-)AGU-AA- -UGA(UU-AA UU)UCAACA- AG-AUGUGAG ACCCU-CA|- ---------- 4321 ------(--- --)[------ ---------- ---------- ---------- uuua------ 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- ---------- ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- --------]- --|------- ---------- GACA-GAU-G -U-A(----- 5041 ----GUGA)U ACAU-A-UGA AGGA-GAGGA UUAAAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CCG-UU A|UGCC|CU- 5221 A-AGA-UAAU CUGG-GUUGC A-CGCGCAAU ACAAU--a-a ua-------- ---------- 5281 ---(-uuuga ----)[---- ---------- ---------- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- ---------- ---------- 5401 ---------- ---(-----) ---------- ---------- ------]--- ---------- 5461 ---------u a-u-u----- -AUA-A-GGG AUAAUAUAA( UGUAA--G)A UAUAUUUG-A 5521 ACAUGG-AAU U--GCUAGUA AA-UUU-UAU (-UUAAUAA- )GUAGA-A-U -UGAAUGAG- 5581 U-CCCUGUUC UU|UGUA-CA CACCGCCCGU CGCUAU-C-U AA-GAU---G GU-AUUA--- 5641 ucu-augaa- -caaa----- ---------- ---------- ---------- ---------- 5701 -------(uu ua----)--- ---------- ---------- ---------- ---------- 5761 ---------- ------|-ua aagugaauag a--uag-u-a cUAG-AUCUG AU-AUAA-G- 5821 UCGUAACAAG GU-------- -----C-U-C CGUUGG(UGA A)CCAGCAGA GGGAUCA--- 5881 --UUA~~~~~ ~~~~~~~~|| ||| // LOCUS Nos.bomb.2 5903 bp RNA RNA 11-JAN-191 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: L39111 LOCUS NMERGOA 1234 bp DNA INV 24-AUG-1995 DEFINITION Nosema bombycis small subunit ribosomal RNA gene. ACCESSION L39111 KEYWORDS PCR primer; small subunit ribosomal RNA. SOURCE Nosema bombycis DNA. ORGANISM Nosema bombycis Eukaryotae; Microsporidia; Microsporea; Microsporida; Apansporoblastina; Nosematidae; Nosema. REFERENCE 1 (bases 1 to 1234) AUTHORS Baker,M.D., Vossbrinck,C.R., Didier,E.S. and Shadduck,J.A. TITLE Small subunit ribosomal DNA phylogeny of various microsporidia with emphasis on AIDS related forms JOURNAL J. Eukaryot. Microbiol. (1995) In press COMMENT NCBI gi: 954762 FEATURES Location/Qualifiers source 1..1234 /organism="Nosema bombycis" /sequenced_mol="DNA" rRNA 1..1234 /note="putative" /product="small subunit ribosomal RNA" primer_bind 1..18 /note="PCR primer binding site; based on small subunit ribosomal RNA of Vairimorpha necatrix; putative" primer_bind complement(1214..1234) /note="PCR primer binding site; based on small subunit ribosomal RNA of Vairimorpha necatrix" BASE COUNT 429 a 155 c 268 g 382 t ORIGIN BASE COUNT 429 a 155 c 268 g 382 t 4669 others ORIGIN 1 |~~~~~~~~~ ~~~~~CACCA GGU(UGA)UU CU|GCCUGA- C-GU-A-GAC --GCUAUACU 61 CUAA|-GAUU AA-CCCAUGC A-UGU---UU AU|------- |-------(- ---)[----- 121 ---------- ---------- --uga----- ---------- --aua-uaaa gaa]------ 181 -----|---A AG|A-CGAA- CAGCU-CAGU AACU-CUUA- UUU-GAUU-- ----UGAUGU 241 AUUA<----- ---------- ---------- ---------- ---------- ---------- 301 g>-gauu--C UAACUAUGU( -U-A-AA)UU AUAGg-uaa- ca-------- ----(----) 361 ---------- -------(-- --)--|---- --<------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ------|--- ---------- ---------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 ---------- ---------- ---------- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- ---------- ---------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 ---------- ---------- ---------- ---------- ---------- ---------- 1021 -|-------- ---------- ---------- ---------- ---------- ---------- 1081 ---------> AUAAUACAAU -AA|GAAUAA GA|--UCU-A UCA--GUUA- --GUUGUUA- 1141 AG(-GUAAUG G)CUU-AACA A-|GACUA-U GAC|GGAU-A A-CGGU|AUU -A-(CUUUG) 1201 UAA-U-AUU- CCG|GAGAAG G-AGC(CU-G AGAGAUU)GC UUACUAAGUC (AUAAG)GAU 1261 -UGCAGC-A- ---------| GGG-GC-GA- AACUU-GACC -UAUGAU-A( --uua---)U 1321 AUUG-A-GGC -|A|GUUAUG AGUA-GU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 -----<---- ---------- ---------- ---------- ---------- -auuuuauaa 1501 ---uuauugu -agu---auu -----guaag u--------a cauauuacaa gaua->AAUC 1561 GGAG|GG-CA A-AU-C-GAG U-G(CCA-GC -AGCC|GC-G GU-AA)UACU UG-|UUCCGA 1621 U-AGUGUG|U AUGAU--GAU UGAUG-CAG| UUA--AAAAG UCUGUAGUUU |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---auuuaua au--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -aagg|auug ---------- 3001 --UAAGGUAU AC|--UGUAU GGUUAGG-AG -AGAG(AU-G AAA---)UGU G-AUAA-C-C 3061 CUAAC-UGG- A-UGAACA-G AAGC(-GAAA )--GC|U--- GUAUAC-UU| AA-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUG ---UAUUAUU -AGA-A|CA- A-GGACGUAA 3301 GCUAGAGGA- UCGAAGAUG( AUUA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CA-U -UGUAG|UUC UA--GCA-GU AAACUAUGUU GAA|CC|--- 3421 --auaga-ua uau------- ----(----u uugau----) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- --au-aua-u -u-uaug--- ---------- ----UAGA(- 3661 GAAA-)UUAA -GAUUAU-AU UGAC|-U|C- UGGGGAUAGU AU--GA-UC( --GCAA-)GA 3721 UUG-AAAAUU -AAAG--AAA -GUG|AC-GG -AA-GAAUA- -CCAC-AAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --A-GU|-GG 4021 AUUGUGCG|G CU-UAAUUUG (ACUCAA-CC )CGGG--GUA AUUUACCAGG UA[uaa---- 4081 cauggua--- ---------- ---(uaauau u-u)------ ---------- ----uau--c 4141 aug-a----- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UA-GU- GGU-G-CAUG |GCC|GU-UU CCA|AUGGA- U|GCU(-GUG 4261 A-)AGU-AA- -UGA(UU-AA UU)UCAACA- AG-AUGUGAG ACCCU-CA|- ---------- 4321 ------(--- --)[------ ---------- ---------- ---------- uuua------ 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- ---------- ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- --------]- --|------- ---------- GACA-GAU-G -U-A(----- 5041 ----GUGA)U ACAU-A-UGA AGGA-GAGGA UUAAAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CCG-UU A|UGCC|CU- 5221 A-AGA-UAAU CUGG-GUUGC A-CGCGCAAU ACAAU--a-a ua-------- ---------- 5281 ---(-uuuga ----)[---- ---------- ---------- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- ---------- ---------- 5401 ---------- ---(-----) ---------- ---------- ------]--- ---------- 5461 ---------u a-u-u----- -AUA-A-GGG AUAAUAUAA( UGUAA--G)A UAUAUUUG-A 5521 ACAUGG-AAU U--GCUAGUA AA-UUU-UAU (-UUAAUAA- )GUAGA-A-U -UGAAUGAG- 5581 U-CCCUGUUC UU|UGUA-CA CACCGCCCGU CGCUAU-C-U AA-GAU---G GU-AUUA--- 5641 ucu-augaa- -caaa----- ---------- ---------- ---------- ---------- 5701 -------(uu ua----)--- ---------- ---------- ---------- ---------- 5761 ---------- ------|-ua aaguGAauag a--uag-u-a cUAG-AUCUG AU-AUAA-G- 5821 UCGUAACAUG GU-------- -----U-G-C UGUUGG(AGA A)CCAUUAGC AGGAUCA--- 5881 --UAA~~~~~ ~~~~~~~~|| ||| // LOCUS N.ceranae 5903 bp RNA RNA 11-JAN-191 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: U26533 LOCUS NSU26533 1259 bp DNA INV 12-JUN-1995 DEFINITION Nosema ceranae small subunit ribosomal RNA gene. ACCESSION U26533 KEYWORDS . SOURCE Nosema ceranae. ORGANISM Nosema ceranae Eukaryotae; Microsporidia; Microsporea; Microsporida; Apansporoblastina; Nosematidae; Nosema. REFERENCE 1 (bases 1 to 1259) AUTHORS Fries,I., da Silva,A.J., Slemenda,S.B., Feng,F. and Pieniazek,N.J. TITLE Nosema ceranae sp. nov. (Microsporidia, Nosematidae), morphological and molecular characterization of a microsporidian parasite of the Asian honey bee Apis cerana (Hymenoptera, Apidae) JOURNAL Unpublished REFERENCE 2 (bases 1 to 1259) AUTHORS Pieniazek,N.J. TITLE Direct Submission JOURNAL Submitted (08-MAY-1995) Norman J. Pieniazek, Centers for Disease Control, Division of Parasitic Diseases, 4770 Buford Highway NE, Atlanta, GA 30341-3724, USA COMMENT NCBI gi: 857489 FEATURES Location/Qualifiers source 1..1259 /organism="Nosema ceranae" /specific_host="Apis cerana" /note="This species name was unpublished at the time of submission" rRNA 1..1259 /note="small subunit ribosomal RNA, SSU-rRNA" /product="16S ribosomal RNA" primer_bind 1..21 /note="sequence derived from PCR primer binding region" primer_bind complement(1233..1259) /note="sequence derived from PCR primer binding region" BASE COUNT 403 a 169 c 288 g 399 t ORIGIN BASE COUNT 403 a 169 c 288 g 399 t 4644 others ORIGIN 1 |~~~~~~~~~ ~~~~~CACCA GGU(UGA)UU CU|GCCUGA- C-GU-A-GAC --GCUAUUCC 61 CUAA|-GAUU AA-CCCAUGC A-UGU---UU UU|------- |-------(- ---)[----- 121 ---------- ---------- -----gaca- ---------- --------uu uga]------ 181 -----|---A AA|A-UGGA- CUGCU-CAGU AAUA-CUCA- CUU-UAUU-- ----UUAUGU 241 AAAU<----- ---------- ---------- ---------- ---------- ---------- 301 ->uuuuaa-u UAACUACGU( -U-A-AA)GU GUAGa-UAA- gau------- ----(----) 361 ---------- -------(-- --)--|---- --<------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ------|--- ---------- ---------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 ---------- ---------- ---------- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- ---------- ---------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 ---------- ---------- ---------- ---------- ---------- ---------- 1021 -|-------- ---------- ---------- ---------- ---------- ---------- 1081 ---------> -guUUACAGU -AA|GAGUGA GA|--CCU-A UCA--GCUA- --GUUGUUA- 1141 AG(-GUAAUG G)CUU-AACA A-|GGCUG-U GAC|GGGU-A A-CGGU|AUU -A-(CUUUG) 1201 UAA-U-AUU- CCG|GAGAAG G-AGC(CU-G AGAGACG)GC UACU-AAGUC (UAAG-)GAU 1261 -UGCAGC-A- ---------| GGG-GC-GA- AACUU-GACC -UAUGGA-U( ---uuu--)A 1321 UCUG-AGG-C -|A|GUUAUG GGAA-GU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 -----<---- ---------a aua------u uauau-uguu ---------- ---------- 1501 ---------u -cau---auu -----uuaaa --------ag uauaugaggu gauu->AAUU 1561 GGAG|GG-CA A-AU-C-AAG U-G(CCA-GC -AGCC|GC-G GU-AA)UACU UG-|UUCCAA 1621 G-AGUGUG|U AUGAU--GAU UGAUG-CAG| UUA--AAAAG UCCGUAGUUU |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- --auuuuuua ag--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -AAGc|aAua ---------- 3001 --UGAGGUGU AC|--UGUAU AGUUGGG-AG -AAAG(AU-G AAA---)UGU G-ACGA-C-C 3061 CUGAC-UGG- A-CGAACA-G AAGC(-GAAA )--GC|U--- GUACAC-UU| GU-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUG ---UAUUUUU -UGA-A|CA- A-GGACGUAA 3301 GCUGGAGGA- GCGAAGAUG( AUUA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CA-U -UGUAG|UUC CA--GCA-GU AAACUAUGCC GAC|GA|--- 3421 --uguga-ua ugg-a----- ----(---aa auauuaa--) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- u-uu-gua-u -u-acau--- ---------- ----aaUA(- 3661 GAAA-)UUU- -GAGUUU-UU UGGC|-U|C- UGGGGAUAGU AU--GA-UC( --GCAA-)GA 3721 UUG-AAAAUU -AAAG--AAA -UUG|AC-GG -AA-GAAUA- -CCAC-AAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --A-GU|-GG 4021 AUUGUGCG|G CU-UAAUUUG (ACUCAA-CG )CGAG--GUA ACUUACCAAU AU[u---uua 4081 uuau-uuuga ga-------- gaa(cgguuu uuug)----- uuu------- -ga-gaa--u 4141 gau-aa---- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UA-GU- GGU-G-CAUG |GCC|GU-UU UCA|AUGGA- U|GCU(-GUG 4261 A-)AGU-UU- -UGA(UU-AA UU)UCAACA- AG-ACGUGAG ACCCUuauu- ---------- 4321 ------(--- --)[uuu--- ---------- ---------- ---------u auu------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- ---------- ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- -----aaa]- --|------- ---------- GACA-GAC-A -C--(----- 5041 --aauca-)- GUGU-A-GGA AGGA-AAGGA UUAAAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CCG-UU A|UGCC|CU- 5221 C-UGA-CAUU UUGG-GCUGC A-CGCGCAAU ACAAU--a-g au-------- ---------- 5281 ---(-auaua ----)[---- ---------- ---------- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- ---------- ---------- 5401 ---------- ---(-----) ---------- ---------- ------]--- ---------- 5461 ---------a u-c-u----- -UUA-U-GGG AUAAUAUUU( UGUAA--G)A GAUAUUUG-A 5521 ACUUGG-AAU U--GCUAGUA AA-UUU-UAU (-UAAAUAA- )GUAGA-A-U -UGAAUGUG- 5581 U-CCCUGUUC UU|UGUA-CA CACCGCCCGU CGCUAU-C-U AA-GAU---G AU-AUAU--- 5641 guu-gugaa- -auuagu--- ---------- ---------- ---------- ---------- 5701 -------(ga aa----)--- ---------- ---------- ---------- ---------- 5761 ---------- ---ac-|ua- -cuuaaacAA U--AUG-U-A UUAG-AUCUG AU-AUAA-G- 5821 UCGUAacAUG GU-------- -----U-G-C UGUUGG(AGA A)CCAUUAGC AGGAUCA--- 5881 --uaa----- -------~|| ||| // LOCUS N.furnacal 5903 bp RNA RNA 11-JAN-191 DEFINITION Nosema furnacalis. ACCESSION No information KEYWORDS No information. SOURCE Nosema furnacalis. ORGANISM Nosema furnacalis. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: U26532 LOCUS NFU26532 1232 bp DNA INV 12-JUN-1995 DEFINITION Nosema furnacalis small subunit ribosomal RNA gene. ACCESSION U26532 KEYWORDS . SOURCE Nosema furnacalis. ORGANISM Nosema furnacalis Eukaryotae; Microsporidia; Microsporea; Microsporida; Apansporoblastina; Nosematidae; Nosema. REFERENCE 1 (bases 1 to 1232) AUTHORS Pieniazek,N.J., da Silva,A.J., Slemenda,S.B., Gutell,R.R., Yasunaga,C., Munderloh,U.G. and Kurtti,T.J. TITLE Interrelationship among Nosema furnacalis, Nosema pyrausta, and Nosema bombycis as revealed by their small subunit ribosomal RNA JOURNAL Unpublished REFERENCE 2 (bases 1 to 1232) AUTHORS Pieniazek,N.J. TITLE Direct Submission JOURNAL Submitted (08-MAY-1995) Norman J. Pieniazek, Centers for Disease Control, Division of Parasitic Diseases, 4770 Buford Highway NE, Atlanta, GA 30341-3724, USA COMMENT NCBI gi: 857488 FEATURES Location/Qualifiers source 1..1232 /lab_host="Helicoverpa zea" /strain="Ankeny, obtained from Dr. L. Lewis" /organism="Nosema furnacalis" /specific_host="Ostrinia furnacalis" rRNA 1..1232 /note="small subunit ribosomal RNA, SSU-rRNA" /product="16S ribosomal RNA" primer_bind 1..28 /note="sequence derived from PCR primer binding region" primer_bind complement(1206..1232) /note="sequence derived from PCR primer binding region" BASE COUNT 431 a 155 c 263 g 383 t ORIGIN BASE COUNT 431 a 155 c 263 g 383 t 4671 others ORIGIN 1 |~~~~~~~~~ ~~~~~CACCA GGU(UGA)UU CU|GCCUGA- C-GU-A-GAC --GCUAUACU 61 CUAA|-GAUU AA-CCCAUGC A-UGU---UU AU|------- |-------(- ---)[----- 121 ---------- ---------- ---uga---- ---------- --aua-uaaa gaa]------ 181 -----|---A AG|A-CGAA- CAGCU-CAGU AACU-CUUA- UUU-CAUU-- ----UGAUGU 241 AUUA<----- ---------- ---------- ---------- ---------- ---------- 301 ->-ggauu-A UAACUAUGU( -U-A-AA)UU AUAGa-UAA- caau------ ----(----) 361 ---------- -------(-- --)--|---- --<------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ------|--- ---------- ---------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 ---------- ---------- ---------- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- ---------- ---------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 ---------- ---------- ---------- ---------- ---------- ---------- 1021 -|-------- ---------- ---------- ---------- ---------- ---------- 1081 ---------> --aAUACAAU -AA|GAAUAA GA|--UCU-A UCA--GUUA- --GUUGUUA- 1141 AG(-GUAAUG G)CUU-AACA A-|GACUA-U GAC|GGAU-A A-CGGU|AUU -A-(CUUUG) 1201 UAA-U-AUU- CCG|GAGAAG G-AGC(CU-G AGAGAUU)GC UACU-AAGUC (UAAG-)GAU 1261 -UGCAGC-A- ---------| GGG-GC-GA- AACUU-GACC -UAUG-A-U( ---aug--)A 1321 UAUUGAGG-C -|A|GUUAUG AGUA-GU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 -----<---- ---------- ---------- ---------- ---------- --auuuuuaa 1501 ---uuauugu -agu---auu -----guaag --------ua uauacuacaa gaua->AAUC 1561 GGAG|GG-CA A-AU-C-GAG U-G(CCA-GC -AGCC|GC-G GU-AA)UACU UG-|UUCCGA 1621 U-AGUGUG|U AUGAU--GAU UGAUG-CAG| UUA--AAAAG UCUGUAGUUU |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---auuauua au--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -AAGc|aUug ---------- 3001 --UGAGGUAU AU|--UGUAU GGUUAGG-AG -AGAG(AU-G AAA---)UGU G-AUAA-C-C 3061 CUAAC-UGG- A-UGAACA-G AAGC(-GAAA )--GC|U--- AUAUAC-UU| AA-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUG ---UAUUAUU -AGA-A|CA- A-GGACGUAA 3301 GCUAGAGGA- UCGAAGAUG( AUUA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CA-U -UGUAG|UUC UA--GCA-GU AAACUAUGUU aaa|u----- 3421 --cauag-au aca-a----- ----(----u auuau----) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- --uu-gua-u -u-uaug--- ---------- ----uaGA(- 3661 GAAA-)UUAA -GAUUAU-AU UGAC|-U|C- UGGGGAUAGU AU--GA-UC( --GCAA-)GA 3721 UUG-AAAAUU -AAAG--AAA -UUG|AC-GG -AA-GAAUA- -CCAC-AAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --A-GU|-GG 4021 AUUGUGCG|G CU-UAAUUUG (ACUCAA-CG )CGGG--GUA AUUUACCAGA UA[u---cac 4081 ---------- -------aug gua--uaaua uuu------- uaucau---- -ga------- 4141 ---------- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UA-GU- GGU-G-CAUG |GCC|GU-UU CCA|AUGGA- U|GCU(-GUG 4261 A-)AGU-AA- -UGA(UU-AA UU)UCAACA- AG-AUGUGAG ACCCU-CU|- ---------- 4321 ------(--- --)[------ ---------- ---------- ---------a uuaa------ 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- ---------- ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- --------]- --|------- ---------- GACA-GAU-G -U-A(----- 5041 ---guga-)U ACAU-A-UGA AGGA-GAGGA UUAAAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CCG-UU A|UGCC|CU- 5221 A-AGA-UAAU CUGG-GUUGC A-CGCGCAAU ACAAU--a-a uau------- ---------- 5281 ---(-uua-- ----)[---- ---------- ---------- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- ---------- ---------- 5401 ---------- ---(-----) ---------- ---------- ------]--- ---------- 5461 --------au a-u-u----- -AUA-A-GGG AUAAUAUAA( UGUAA--G)A UAUAUUUG-A 5521 ACAUGG-AAU U--GCUAGUA AA-UUU-UAU (-UUAAUAA- )GUAGA-A-U -UGAAUGUG- 5581 U-CCCUGUUC UU|UGUA-CA CACCGCCCGU CGCUAU-C-U AA-GAU---G GU-AUUA--- 5641 ucu-augaa- -c-aaa---- ---------- ---------- ---------- ---------- 5701 -------(uu ua----)--- ---------- ---------- ---------- ---------- 5761 ---------- ----u-|aa- -agugaauAG A--uag-u-a cUAG-AUCUG AU-AUAA-G- 5821 UCGUAACAUG GU-------- -----U-G-C UGUUGG(AGA A)CCAUUAGC AGGAUCA--- 5881 --uaa----- -------~|| ||| // LOCUS N.oulemae 5903 bp RNA RNA 11-JAN-191 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: U27359 LOCUS NSU27359 1251 bp DNA INV 07-JUN-1995 DEFINITION Nosema oulemae small subunit ribosomal RNA gene. ACCESSION U27359 KEYWORDS . SOURCE Nosema oulemae. ORGANISM Nosema oulemae Eukaryotae; Microsporidia; Microsporea; Microsporida; Apansporoblastina; Nosematidae; Nosema. REFERENCE 1 (bases 1 to 1251) AUTHORS Ditrich,O., Hostounsky,Z., Lom,J., da Silva,A.J., Slemenda,S.B. and Pieniazek,N.J. TITLE Nosema oulemae sp.nov. (Microsporidia, Nosematidae), morphological and molecular characterization of a microsporidian parasite of Oulema melanopus L. (Coleoptera, Chrysomelidae) JOURNAL Unpublished REFERENCE 2 (bases 1 to 1251) AUTHORS Pieniazek,N.J. TITLE Direct Submission JOURNAL Submitted (17-MAY-1995) Norman J. Pieniazek, Centers for Disease Control, Division of Parasitic Diseases, 4770 Buford Highway NE, Atlanta, GA 30341-3724, USA COMMENT NCBI gi: 849158 FEATURES Location/Qualifiers source 1..1251 /lab_host="Gastrophysa viridula or Oulema lichenis" /organism="Nosema oulemae" /isolate="isolated by Dr. Zdenek Hostounsky" /specific_host="Oulema melanopus L." /note="This species name was unpublished at the time of submission" rRNA 1..1251 /note="SSU-rRNA" /product="small subunit ribosomal RNA" primer_bind 1..21 /note="sequence derived from PCR primer binding region" primer_bind complement(1225..1251) /note="sequence derived from PCR primer binding region" BASE COUNT 400 a 170 c 291 g 390 t ORIGIN BASE COUNT 400 a 170 c 291 g 390 t 4652 others ORIGIN 1 |~~~~~~~~~ ~~~~~CACCA GGU(UGA)UU CU|GCCUGA- C-GU-A-GAC --GCUAUUCC 61 CUAA|-UAUU AA-CCCAUGC A-UGU---UU UU|------- |-------(- ---)[----- 121 ---------- ---------- ---gacauuu ---------- -------auu uga]------ 181 -----|---A AA|A-UGGA- CUGCU-CAGU AAUA-CUCA- CUU-UAUU-- ----UGAUGU 241 ACAU<----- ---------- ---------- ---------- ---------- ---------- 301 ->uugaug-A UAACUACGU( -U-A-AA)GU GUAGa-UAA- aaug------ ----(----) 361 ---------- -------(-- --)--|---- --<------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ------|--- ---------- ---------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 ---------- ---------- ---------- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- ---------- ---------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 ---------- ---------- ---------- ---------- ---------- ---------- 1021 -|-------- ---------- ---------- ---------- ---------- ---------- 1081 ---------> --UGUACAGU -AA|GAGUGA GA|--CCU-A UCA--GCUA- --GUUGUUA- 1141 AG(-GUAAUG G)CUU-AACA A-|GGCAG-U GAC|GGGU-A A-CGGU|AUU -A-(CUUUG) 1201 UAA-U-AUU- CCG|GAGAAG G-AGC(CU-G AGAGACG)GC UACU-AAGUC (UAAG-)GAU 1261 -UGCAGC-A- ---------| GGG-GC-GA- AACUU-GACC -UAUGGA-U( ---uuu--)A 1321 UCUG-A-GGC -|A|GUUAUG GGAA-GU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 -----<---- ---------a aua(-----u uauau)uguu ---------- ---------- 1501 ---------u -cau---auu -----guaaa --------ag uauaugaggu gauu->AAUU 1561 GGAG|GG-CA A-AU-C-AAG U-G(CCA-GC -AGCC|GC-G GU-AA)UACU UG-|UUCCAA 1621 G-AGUGUG|U AUGAU--GAU UGAUG-CAG| UUA--AAAAG UCCGUAGUUU |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---auauuua ag--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -AAGc|aAua ---------- 3001 --UGAGGUGU AC|--UGUAU AGUUGGG-AG -AGAG(AU-G AAA---)UGU A-ACGA-C-C 3061 CUGAC-UGG- A-CGAACA-G AAGC(-GAAA )--GC|U--- GUACAC-UU| GU-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUG ---UAUUUUU -UGA-A|CA- A-GGACGUAA 3301 GCUGGAGGA- GCGAAGAUG( AUUA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CA-U -UGUAG|UUC CA--GCA-GU AAACUAUGCC GAC|GA|--- 3421 --uguga-ua uga-u----- ----(----- auuu-----) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- a-uu-gua-u -u-acau--- ---------- ----gaUA-- 3661 GAAA--UUU- -GAGUUU-UU UGGC|-U|C- UGGGGAUAGU AU--GA-UC( --GCAA-)GA 3721 UUG-AAAAUU -AAAG--AAA -UUG|AC-GG -AA-GAAUA- -CCAC-AAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --A-GU|-GG 4021 AUUGUGCG|G CU-UAAUUUG (ACUCAA-CG )CGAG--GUA ACUUACCAAU AU[u---uua 4081 uuau-ucaga ga-------- gaa(uuuuu- a-a)------ uuu------- -ga-gga--u 4141 gau-aa---- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UA-GU- GGU-G-CAUG |GCC|GU-UU UCA|AUGGA- U|GCU(-GUG 4261 A-)AGU-UU- -UGA(UU-AA UU)UCAACA- AG-ACGUGAG ACCCU-UU|- ---------- 4321 ------(--- --)[uu---- ---------- ---------- ---------u ua-------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- ---------- ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ----uaua]- --|------- ---------- GACA-GAC-A -C--(----- 5041 ---AAUCA)- GUGU-A-GGA AGGA-AAGGA UUAAAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CCG-UU A|UGCC|CU- 5221 C-AGA-CAUU UUGG-GCUGC A-CGCGCAAU ACAAU--a-g au-------- ---------- 5281 ---(-auaua ----)[---- ---------- ---------- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- ---------- ---------- 5401 ---------- ---(-----) ---------- ---------- ------]--- ---------- 5461 ---------a u-c-u----- -UUA-U-GGG AUAAUAUUU( UGUAA--G)A GAUAUUUG-A 5521 ACUUGG-AAU U--GCUAGUA AA-UUU-UAU (-UAAAUAA- )GUAGA-A-U -UGAAUGUG- 5581 U-CCCUGUUC UU|UGUA-CA CACCGCCCGU CGCUAU-C-U AA-GAU---G AU-AUGU--- 5641 guu-gugaa- -auuagu--- ---------- ---------- ---------- ---------- 5701 -------(ga aa----)--- ---------- ---------- ---------- ---------- 5761 ---------- ---ac-|ua- -cuugaacAA U--aug-u-a uUAG-AUCUG AU-AUAA-G- 5821 UCGUAACAUG GU-------- -----U-G-C UGUUGG(AGA A)CCAUUAGC AGGAUCA--- 5881 --uaa----- -------~|| ||| // LOCUS N.portugal 5903 bp RNA RNA 11-JAN-1997 DEFINITION Nosema portugal subsp. was Vairimorpha "portugal". ACCESSION No information KEYWORDS No information. SOURCE Nosema portugal subsp. was Vairimorpha "portugal". ORGANISM Nosema portugal. REFERENCE 1 (bases 1 to 1232) AUTHORS Charlie Vossbrinck JOURNAL No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: AF033316 LOCUS AF033316 1393 bp DNA INV 02-JAN-1999 DEFINITION Nosema portugal small subunit ribosomal RNA gene sequence. ACCESSION AF033316 NID g4104170 KEYWORDS . SOURCE Nosema portugal. ORGANISM Nosema portugal Eukaryota; Microsporidia; Nosematidae; Nosema. REFERENCE 1 (bases 1 to 1393) AUTHORS Maddox,J.V., Baker,M.D., Jeffords,M.R., Kuras,M., Linde,A., Solter,L.F., McManus,M.L., Vavra,J. and Vossbrinck,C.R. TITLE Nosema portugal, N. sp., isolated from gypsy moths (Lymantria dispar L.) collected in Portugal JOURNAL Unpublished REFERENCE 2 (bases 1 to 1393) AUTHORS Vossbrinck,C.R. TITLE Direct Submission JOURNAL Submitted (06-NOV-1997) Soil and Water, Connecticut Agricultural Experimental Station, 123 Huntington Street, New Haven, CT 06504, USA FEATURES Location/Qualifiers source 1..1393 /organism="Nosema portugal" /specific_host="Lymantria dispar (gypsy moth)" /db_xref="taxon:72706" /note="gypsy moth parasite" rRNA 1..1393 /product="small subunit ribosomal RNA" BASE COUNT 463 a 190 c 308 g 432 t BASE COUNT 405 a 172 c 285 g 383 t 4658 others ORIGIN 1 |~~~~~~~~~ ~~~~~CACCA GGU(UGA)UU CU|GCCUGA- C-GU-A-GAC --GCUAUUCC 61 CUAA|-GAUU AA-CCCAUGC A-UGU---UU UU|------- |-------(- ---)[----- 121 ---------- ---------- ---gac---- ---------- --auu----- uga]------ 181 -----|---a aa-A-UGGA- CUGCU-CAGU AAUA-CUCA- CUU-AAUU-- ----UUAUGU 241 ACAU<----- ---------- ---------- ---------- ---------- ---------- 301 ->-uugaaac UAACUACGU( -U-A-AA)GU GUAGa-uaa- gaug------ ----(----) 361 ---------- -------(-- --)--|---- --<------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ------|--- ---------- ---------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 ---------- ---------- ---------- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- ---------- ---------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 ---------- ---------- ---------- ---------- ---------- ---------- 1021 -|-------- ---------- ---------- ---------- ---------- ---------- 1081 ---------> --UGUACAGU -AA|GAGUGA GA|--CCU-A UCA--GCUA- --GUUGUUA- 1141 AG(-GUAAUG G)CUU-AACA A-|GGCAG-U GAC|GGGU-A A-CGGU|AUU -A-(CUUUG) 1201 UAA-U-AUU- CCG|GAGAAG G-AGC(CU-G AGAGACG)GC UACU-AAGUC (UAAG-)GAU 1261 -UGCAGC-A- ---------| GGG-GC-GA- AACUU-GACC -UAUGGA-U( ---uuu--)A 1321 UCUG-A-GGC -|A|GUUAUG GGAA-GU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 -----<---- ---------a a---uauuau a---u-uguu ---------- ---------- 1501 ---------u -cau---auu -----uuaaa --------aa uauaugaggu gauu->AAUU 1561 GGAG|GG-CA A-AU-C-AAG U-G(CCA-GC -AGCC|GC-G GU-AA)UACU UG-|UUCCAA 1621 G-AGUGUG|U AUGAU--GAU UGAUG-CAG| UUA--AAAAG UCCGUAGUUU |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---auauuua ag--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -AAGC|aAua ---------- 3001 --UGAGGUGU AC|--UGUAU AGUUGGG-AG -AAAG(AU-G AAA---)UGU A-ACGA-C-C 3061 CUGAC-UGG- A-CGAACA-G AAGC(-GAAA )--GC|U--- GUACAC-UU| GU-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUG ---UAUUUUU -UGA-A|CA- A-GGACGUAA 3301 GCUGGAGGA- GCGAAGAUG( AUUA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CA-U -UGUAG|UUC CA--GCA-GU AAACUAUGCC GAC|GA|--- 3421 --uguga-ua uga------- ----(----u auauu----) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- --uu-gua-u -u-acau--- ---------- ----aaUA(- 3661 GAAA-)UUA- -GAGUUU-UU UGGC|-U|C- UGGGGAUAGU AU--GA-UC( --GCAA-)GA 3721 UUG-AAAAUU -AAAG--AAA -UUG|AC-GG -AA-GAAUA- -CCAC-AAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --A-GU|-GG 4021 AUUGUGCG|G CU-UAAUUUG (ACUCAA-CG )CGAG--GUA ACUUACCAAU AU[u---uua 4081 uuau-uuuga ga-------c gau(u-uuu- --a)------ auca------ -ga-gaa--u 4141 gau-aa---- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UA-GU- GGU-G-CAUG |GCC|GU-UU UCA|AUGGA- U|GCU(-GUG 4261 A-)AGU-UU- -UGA(UU-AA UU)UCAACA- AG-ACGUGAG ACCCU-UU|- ---------- 4321 ------(--- --)[uauua- ---------- ---------- --------ua ---------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- ---------- ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- --------]- --|------- ---------- GACA-GAC-A -C-A(----- 5041 ---aucag)U GU---A-GGA AGGA-AAGGA UUAAAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CCG-UU A|UGCC|CU- 5221 C-AGA-CAUU UUGG-GCUGC A-cgcgcaau acaau--a-g au-------- ---------- 5281 ---(-auaua ----)[---- ---------- ---------- ---------- ---------- 5341 ---------- ---------- ---------- ---------- ---------- ---------- 5401 ---------- ---(-----) ---------- ---------- ------]--- ---------- 5461 ---------a u-c-u----- -UUA-U-GGG AUAAUAUUU( UGUAA--G)A GAUAUUUG-A 5521 ACUUGG-AAU U--GCUAGUA AA-UUU-UAU (-UAAAUAA- )GUAGA-A-U -UGAAUGUG- 5581 U-CCCUGUUC UU|UGUA-CA CACCGCCCGU CGCUAU-C-U AA-GAU---G AU-AUAU--- 5641 guu-gugaa- -auuagu--- ---------- ---------- ---------- ---------- 5701 -------(ga aa----)--- ---------- ---------- ---------- ---------- 5761 ---------- ---ac-|ua- -cuugaacAA U--aug-u-a uUAG-AUCUG AU-AUAA-G- 5821 UCGUAACAUG GU-------- -----U-G-C UGUUGG(AGA A)CCAUUAGC AGGAUCA--- 5881 --UAA~~~~~ ~~~~~~~~|| ||| // LOCUS N.trichopl 5903 bp RNA RNA 11-JAN-191 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: U09282 LOCUS NTU09282 1233 bp DNA INV 15-MAY-1994 DEFINITION Nosema trichoplusiae ATCC 30702 small subunit rRNA gene. ACCESSION U09282 KEYWORDS . SOURCE Nosema trichoplusiae ORGANISM Nosema trichoplusiae Eucaryotae; Protozoa; Microspora; Microsporea; Microsporida; Apansporoblastina; Nosematidae; Nosema. REFERENCE 1 (bases 1 to 1233) AUTHORS Da Silva,A.J., Slemenda,S.B. and Pieniazek,N.J. TITLE Small Subunit rRNA Sequence of Nosema trichoplusiae (Microsporida), ATCC 30702 JOURNAL Unpublished STANDARD full automatic REFERENCE 2 (bases 1 to 1233) AUTHORS Pieniazek,N.J. TITLE Direct Submission JOURNAL Submitted (29-APR-1994) Norman J. Pieniazek, Centers for Disease Control, Division of Parasitic Diseases, 4770 Buford Highway NE, Atlanta, GA 30341-3724, USA STANDARD full automatic COMMENT NCBI gi: 487398 FEATURES Location/Qualifiers rRNA 1..1233 /product="small subunit ribosomal RNA" misc_feature 1..21 /note="PCR primer based on Vairimorpha necatrix SSU-rRNA, putative" misc_feature 1207..1233 /note="PCR primer based on Vairimorpha necatrix SSU-rRNA, putative" source 1..1233 /strain="ATCC 30702" /organism="Nosema trichoplusiae" BASE COUNT 429 a 154 c 267 g 383 t ORIGIN BASE COUNT 429 a 154 c 267 g 383 t 4670 others ORIGIN 1 |~~~~~~~~~ ~~~~~CACCA GGU(UGA)UU CU|GCCUGA- C-GU-A-GAC --GCUAUACU 61 CUAA|-GAUU AA-CCCAUGC A-UGU---UU AU|------- |-------(- ---)[----- 121 ---------- ---------- --uga----- ---------- --aua-uaaa gaa]------ 181 -----|---a ag|a-CGAA- CAGCU-CAGU AACU-CUUA- UUU-GAUU-- ----UGAUGU 241 AUUA<----- ---------- ---------- ---------- ---------- ---------- 301 ->ggauu--C UAACUAUGU( -U-A-AA)UU AUAGg-uaa- ca-------- ----(----) 361 ---------- -------(-- --)--|---- --<------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ------|--- ---------- ---------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 ---------- ---------- ---------- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- ---------- ---------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 ---------- ---------- ---------- ---------- ---------- ---------- 1021 -|-------- ---------- ---------- ---------- ---------- ---------- 1081 ---------> auaAUACAAU -AA|GAAUAA GA|--UCU-A UCA--GUUA- --GUUGUUA- 1141 AG(-GUAAUG G)CUU-AACA A-|GACUA-U GAC|GGAU-A A-CGGU|AUU -A-(CUUUG) 1201 UAA-U-AUU- CCG|GAGAAG G-AGC(CU-G AGAGAUU)GC UACU-AAGUC (UAAG-)GAU 1261 -UGCAGC-A- ---------| GGG-GC-GA- AACUU-GACC -UAUGAU-A( --uua---)U 1321 AUUG-A-GGC -|A|GUUAUG AGUA-GU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 -----<---- ---------- ---------- ---------- --------au uuuauaauua 1501 ------uugu -agu---auu -----guaag u--------a cauauuacaa gaua->AAUC 1561 GGAG|GG-CA A-AU-C-GAG U-G(CCA-GC -AGCC|GC-G GU-AA)UACU UG-|UUCCGA 1621 U-AGUGUG|U AUGAU--GAU UGAUG-CAG| UUA--AAAAG UCUGUAGUUU |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---auuuuau aa--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -uaag|cauu g--------- 3001 --UAAGGUAU AC|--UGUAU GGUUAGG-AG -AGAG(AU-G AAA---)UGU G-AUAA-C-C 3061 CUAAC-UGG- A-UGAACA-G AAGC(-GAAA )--GC|U--- GUAUAC-UU| AA-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUG ---UAUUAUU -AGA-A|CA- A-GGACGUAA 3301 GCUAGAGGA- UCGAAGAUG( AUUA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CA-U -UGUAG|UUC UA--GCA-GU AAACUAUGUU GAA|UC|--- 3421 --auaga-ua uau------- ----(----u uugau----) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- --au-aua-u -u-uaug--- ---------- ----UAGA(- 3661 GAAA-)UUAA -GAUUAU-AU UGAC|-U|C- UGGGGAUAGU AU--GA-UC( --GCAA-)GA 3721 UUG-AAAAUU -AAAG--AAA -UUG|AC-GG -AA-GAAUA- -CCAC-AAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --A-GU|-GG 4021 AUUGUGCG|G CU-UAAUUUG (ACUCAA-CG )CGGG--GUA AUUUACCAGG UA[uaa---- 4081 cauggua--- ---------- ---(uaauau u-u)------ ---------- ----uau--c 4141 auga------ -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UA-GU- GGU-G-CAUG |GCC|GU-UU CCA|AUGGA- U|GCU(-GUG 4261 A-)AGU-AA- -UGA(UU-AA UU)UCAACA- AG-AUGUGAG ACCCU-CA|- ---------- 4321 ------(--- --)[------ ---------- ---------- ---------- uaua------ 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- ---------- ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- --------]- --|------- ---------- GACA-GAU-G -U-A(----- 5041 ---guga-)U ACAU-A-UGA AGGA-GAGGA UUAAAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CCG-UU A|UGCC|CU- 5221 A-AGA-UAAU CUGG-GUUGC A-CGCGCAAU ACAAU--a-a ua-------- ---------- 5281 ---(-uuuga ----)[---- ---------- ---------- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- ---------- ---------- 5401 ---------- ---(-----) ---------- ---------- ------]--- ---------- 5461 ---------u a-u-u----- -AUA-A-GGG AUAAUAUAA( UGUAA--G)A UAUAUUUG-A 5521 ACAUGG-AAU U--GCUAGUA AA-UUU-UAU (-UUAAUAA- )GUAGA-A-U -UGAAUGAG- 5581 U-CCCUGUUC UU|UGUA-CA CACCGCCCGU CGCUAU-C-U AA-GAU---G GU-AUUA--- 5641 ucu-augaa- -caaa----- ---------- ---------- ---------- ---------- 5701 -------(uu ua----)--- ---------- ---------- ---------- ---------- 5761 ---------- ------|-ua aagugaauag a--uag-u-a cUAG-AUCUG AU-AUAA-G- 5821 UCGUAACAUG GU-------- -----U-G-C UGUUGG(AGA A)CCAUUAGC AGGAUCA--- 5881 --UAA~~~~~ ~~~~~~~~|| ||| // LOCUS N.vespul.1 5903 bp RNA RNA 11-JAN-191 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: U11047 LOCUS NVESSRRN 1245 bp DNA INV 06-JUL-1994 DEFINITION Nosema vespula small subunit ribosomal RNA gene. ACCESSION U11047 KEYWORDS . SOURCE Nosema vespula ORGANISM Nosema vespula Eukaryotae; Hypochondria; Microspora; Microsporea; Microsporida; Apansporoblastina; Nosematidae; Nosema. REFERENCE 1 (bases 1 to 1245) AUTHORS Da Silva,A.J., Maleszka,R., Slemenda,S.B. and Pieniazek,N.J. TITLE Small Subunit rRNA Sequence of Nosema vespula (Microsporida) JOURNAL Unpublished STANDARD full automatic REFERENCE 2 (bases 1 to 1245) AUTHORS Pieniazek,N.J. TITLE Direct Submission JOURNAL Submitted (20-JUN-1994) Pieniazek N. J., Centers for Disease Control, Division of Parasitic Diseases, 4770 Buford Highway NE, Atlanta, GA 30341-3724, USA STANDARD full automatic COMMENT NCBI gi: 507913 FEATURES Location/Qualifiers rRNA 1..1245 /product="small subunit ribosomal RNA" primer_bind 1..21 /note="PCR primer based on V. necatrix SSU-rRNA; putative" primer_bind complement(1219..1245) /note="PCR primer based on V. necatrix SSU-rRNA; putative" source 1..1245 /organism="Nosema vespula" BASE COUNT 403 a 172 c 286 g 384 t ORIGIN BASE COUNT 403 a 172 c 286 g 384 t 4658 others ORIGIN 1 |~~~~~~~~~ ~~~~~CACCA GGU(UGA)UU CU|GCCUGA- C-GU-A-GAC --GCUAUUCC 61 CUAA|-GAUU AA-CCCAUGC A-UGU---UU UU|------- |-------(- ---)[----- 121 ---------- ---------- --gac----- ---------- --auu-u--- -ga]------ 181 -----|---a aa|a-uGGA- CUGCU-CAGU AAUA-CUCA- CUU-UAUU-- ----UUAUGU 241 ACAU<----- ---------- ---------- ---------- ---------- ---------- 301 ->uugaaa-C UAACUACGU( -U-A-AA)GU GUAGa-uaa- ga-------- ----(----) 361 ---------- -------(-- --)--|---- --<------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ------|--- ---------- ---------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 ---------- ---------- ---------- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- ---------- ---------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 ---------- ---------- ---------- ---------- ---------- ---------- 1021 -|-------- ---------- ---------- ---------- ---------- ---------- 1081 ---------> uguGUACAGU -AA|GAGUGA GA|--CCU-A UCA--GCUA- --GUUGUUA- 1141 AG(-GUAAUG G)CUU-AACA A-|GGCAG-U GAC|GGGU-A A-CGGU|AUU -A-(CUUUG) 1201 UAA-U-AUU- CCG|GAGAAG G-AGC(CU-G AGAGACG)GC UACU-AAGUC (UAAG-)GAU 1261 -UGCAGC-A- ---------| GGG-GC-GA- AACUU-GACC -UAUGGA-U( --uuu---)A 1321 UCUG-A-GGC -|A|GUUAUG GGAA-GU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 -----<---- ---------- ---------- ---------- ---------a auauuauauu 1501 ------guuu -cau---auu -----uuaaa a--------g uauaugaggu gauu->AAUU 1561 GGAG|GG-CA A-AU-C-AAG U-G(CCA-GC -AGCC|GC-G GU-AA)UACU UG-|UUCCAA 1621 G-AGUGUG|U AUGAU--GAU UGAUG-CAG| UUA--AAAAG UCCGUAGUUU |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---auauuua ag--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -aagc|aaua ---------- 3001 --UGAGGUGU AC|--UGUAU AGUUGGG-AG -AAAG(AU-G AAA---)UGU A-ACGA-C-C 3061 CUGAC-UGG- A-CGAACA-G AAGC(-GAAA )--GC|U--- GUACAC-UU| GU-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUG ---UAUUUUU -UGA-A|CA- A-GGACGUAA 3301 GCUGGAGGA- GCGAAGAUG( AUUA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CA-U -UGUAG|UUC CA--GCA-GU AAACUAUGCC GAC|GA|--- 3421 --uguga-ua uga------- ----(----u auauu----) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- --uu-gua-u -u-acau--- ---------- ----AAUA(- 3661 GAAA-)UUA- -GAGUUU-UU UGGC|-U|C- UGGGGAUAGU AU--GA-UC( --GCAA-)GA 3721 UUG-AAAAUU -AAAG--AAA -UUG|AC-GG -AA-GAAUA- -CCAC-AAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --A-GU|-GG 4021 AUUGUGCG|G CU-UAAUUUG (ACUCAA-CG )CGAG--GUA ACUUACCAAU AU[u---uua 4081 uuau-uuuga ga-------c ga-(-uuuuu a-a)------ uca------- -ga-gaa--u 4141 gau-aa---- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UA-GU- GGU-G-CAUG |GCC|GU-UU UCA|AUGGA- U|GCU(-GUG 4261 A-)AGU-UU- -UGA(UU-AA UU)UCAACA- AG-ACGUGAG ACCCU-UU|- ---------- 4321 ------(--- --)[ua---- ---------- ---------- ---------- -uua------ 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- ---------- ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ------ua]- --|------- ---------- GACA-GAC-A -C--(----- 5041 ---aauca)- GUGU-A-GGA AGGA-AAGGA UUAAAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CCG-UU A|UGCC|CU- 5221 C-AGA-CAUU UUGG-GCUGC A-CGCGCAAU ACAAU--a-g au-------- ---------- 5281 ---(-auaua ----)[---- ---------- ---------- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- ---------- ---------- 5401 ---------- ---(-----) ---------- ---------- ------]--- ---------- 5461 ---------a u-c-u----- -UUA-U-GGG AUAAUAUUU( UGUAA--G)A GAUAUUUG-A 5521 ACUUGG-AAU U--GCUAGUA AA-UUU-UAU (-UAAAUAA- )GUAGA-A-U -UGAAUGUG- 5581 U-CCCUGUUC UU|UGUA-CA CACCGCCCGU CGCUAU-C-U AA-GAU---G AU-AUAU--- 5641 guu-gugaa- -auuagu--- ---------- ---------- ---------- ---------- 5701 -------(ga aa----)--- ---------- ---------- ---------- ---------- 5761 ---------- ------|acu acuugaacaa u--aug-u-a uUAG-AUCUG AU-AUAA-G- 5821 UCGUAACAUG GU-------- -----U-G-C UGUUGG(AGA A)CCAUUAGC AGGAUCA--- 5881 --UAA----- -------~|| ||| // LOCUS N.vespul.2 5903 bp RNA RNA 11-JAN-191 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: L31842 L31842 LOCUS NSE18SRRA 831 bp ds-DNA INV 20-APR-1994 DEFINITION Nosema vespula 18S ribosomal RNA gene, partial. ACCESSION L31842 KEYWORDS 18S ribosomal RNA. SOURCE Nosema vespula DNA. ORGANISM Nosema vespula Eukaryota; Animalia; Protozoa; Microspora; Microsporea; Microsporida; Apansporoblastina; Nosematidae. REFERENCE 1 (bases 1 to 831) AUTHORS Ninham,J.A. TITLE Phylogenetic analysis of five protoctist parasites of insects JOURNAL Unpublished (1994) STANDARD full automatic COMMENT NCBI gi: 473763 FEATURES Location/Qualifiers rRNA <1..>831 /product="18S ribosomal RNA" /note="position 1 corresponds to position 581 of Plasmodium falciparum 18S rRNA" source 1..831 /organism="Nosema vespula" /sequenced_mol="DNA" /note="undescribed species" BASE COUNT 273 a 113 c 188 g 257 t ORIGIN LOCUS NSE18SRRA 831 bp ds-DNA INV 20-APR-1994 DEFINITION Nosema vespula 18S ribosomal RNA gene, partial. ACCESSION L31842 KEYWORDS 18S ribosomal RNA. SOURCE Nosema vespula DNA. ORGANISM Nosema vespula Eukaryota; Animalia; Protozoa; Microspora; Microsporea; Microsporida; Apansporoblastina; Nosematidae. REFERENCE 1 (bases 1 to 831) AUTHORS Ninham,J.A. TITLE Phylogenetic analysis of five protoctist parasites of insects JOURNAL Unpublished (1994) STANDARD full automatic COMMENT NCBI gi: 473763 FEATURES Location/Qualifiers rRNA <1..>831 /product="18S ribosomal RNA" /note="position 1 corresponds to position 581 of Plasmodium falciparum 18S rRNA" source 1..831 /organism="Nosema vespula" /sequenced_mol="DNA" /note="undescribed species" BASE COUNT 273 a 113 c 188 g 257 t ORIGIN BASE COUNT 273 a 113 c 188 g 257 t 5072 others ORIGIN 1 |~~~~~~~~~ ~~~~~NNNNN NNN(NNN)NN NN|NNNNNN- N-NN-N-NNN --NNNNNNNN 61 NNNN|-NNNN NN-NNNNNNN N-NNN---NN NN|------- |-------(- ---)[----- 121 ---------- ---------- ---nnnnnn- ---------- -nnnn-nnnn nnn]------ 181 -----|---N NN|N-NNNN- NNNNN-NNNN NNNN-NNNN- NNN-NNNN-- ----NNNNNN 241 NNNN<----- ---------- ---------- ---------- ---------- ---------- 301 N>NNNNN--N NNNNNNNNN( -N-N-NN)NN NNNNN-NNN- NNN------- ----(----) 361 ---------- -------(-- --)--|---- --<------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ------|--- ---------- ---------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 ---------- ---------- ---------- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- ---------- ---------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 ---------- ---------- ---------- ---------- ---------- ---------- 1021 -|-------- ---------- ---------- ---------- ---------- ---------- 1081 ---------> -NNNNNNNNN -NN|NNNNNN NN|--NNN-N NNN--NNNN- --NNNNNNN- 1141 NN(-NNNNNN N)NNN-NNNN N-|NNNNN-N NNN|NNNN-N N-NNNN|NNN -N-(NNNNN) 1201 NNN-NNNNN- NNN|NNNNNN N-NNN(NN-N NNNNNNN)NN NNNN-NNNNN (NNNN-)NNN 1261 -NNNNNN-N- ---------| NNN-NN-NN- NNNNN-NNNN -NNNNNN-N( --NNNN--)N 1321 NNNN-N-NNN -|N|NNNNNN NNNN-NN--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 -----<---- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- ---------- ---------- ----->NNNN 1561 NNNN|NN-NN N-NN-N-NNN N-N(NNN-NN -NNNN|GC-G GU-AA)UUCC AG-|CUCCAA 1621 U-AGCGUG|U AUGAU--GAU UGAUG-CAG| UUA--AAAAG UCCGUAGUUU |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---auauuua ag--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -aagc|aAua ---------- 3001 --UGAGGUGU AC|--UGUAU AGUUGGG-AG -AAAG(AU-G AAA---)UGU A-ACGA-C-C 3061 CUGAC-UGG- A-CGAACA-G AAGC(-GAAA )--GC|U--- GUACAC-UU| GU-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUG ---UAUUUUU -UGA-A|CA- A-GGACGUAA 3301 GCUGGAGGA- GCGAAGAUG( AUUA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CA-U -UGUAG|UUC CA--GCA-GU AAACUAUGCC GAC|GA|--- 3421 --uguga-ua uga------- ----(----u auauu----) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- --uu-gua-u -u-acau--- ---------- ----AAUA(- 3661 GAAA-)UUA- -GAGUUU-UU UGGC|-A|C- UGGGGAUAGU AU--GA-UC( --GCAA-)GA 3721 UUG-AAAAUU -AAAG--AAA -UUG|AC-GG -AA-GAAUA- -CCAC-AAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --A-GU|-GG 4021 AUUGUGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--GUA ACUUACCAAU AU[u---uua 4081 uuau-uu-ga ga-------c ga-(-uuuuu a-a)------ uca------- -ga-gaa--u 4141 gau-aa---- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UA-GU- GGU-G-CAUG |GCC|GU-UU UCA|AUGGA- U|GCU(-GUG 4261 A-)AGU-UU- -UGA(UU-AA UU)UCAACA- AG-ACGUGAG ACCCU-UU|- ---------- 4321 ------(--- --)[ua---- ---------- ---------- ---------- uuua------ 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- ---------- ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ------ua]- --|------- ---------- GACA-GAC-A -C--(----- 5041 ---aauca)- GUGU-A-GGA AGGA-AAGGA UUAAAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CCG-UU A|UGCC|CU- 5221 C-AGA-CAUU UUGG-GCUGC A-CGCGCAAU ACAAU--a-g au-------- ---------- 5281 ---(-auaua ----)[---- ---------- ---------- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- ---------- ---------- 5401 ---------- ---(-----) ---------- ---------- ------]--- ---------- 5461 ---------a u-c-u----- -UUA-U-GGG AUAAUAUUU( UGUAA--G)A GAUAUUUG-A 5521 ACUUGG-AAU U--GCUAGUA AA-UUU-UAU (-UAAAUAA- )GUAGA-A-U -UGAAUGUG- 5581 U-CCCUGUUC UU|UGUA-CA CACCGCCCGU CGCUAU-C-U AA-GAU---G AU-AUAU--- 5641 guu-gugaa- -auuagu--- ---------- ---------- ---------- ---------- 5701 -------(ga aa----)--- ---------- ---------- ---------- ---------- 5761 ---------- ------|acu acuugaacaa u--aug-u-a uUAG-AUCUG AU-AUAA-G- 5821 UCGUAACAUG GU-------- -----U-U-C CGUAGG(UGA A)CCUGC-GN NNNNNNN--- 5881 --NNN----- -------~|| ||| // LOCUS Nosema.sp. 5903 bp RNA RNA 29-MAY-1996 DEFINITION Nosema sp.; . ACCESSION D85501 KEYWORDS . SOURCE Nosema sp. ORGANISM Nosema sp. REFERENCE 1 (bases 1 to 1247) AUTHORS Inoue,T. TITLE Direct Submission JOURNAL Bioresource Sciences, Nihon Univ.; Kameino 1866, Fujisawa, Kanagawa 252, Japan (E-mail:tinoue@ddbj.nig.ac.jp, Tel : 0466-83-2563(ex.401), Fax:0466-83-2573) Submitted (21-MAY-1996) to the DDBJ/EMBL/GenBank databases. Tadashi Inoue, Lab. Nucleic Acid Science,, College of STANDARD No information REFERENCE 2 (sites) AUTHORS Hatakeyama,Y., Kawakami,Y., Iwano,H., Inoue,T. and Ishihara,R. TITLE Comparison of secondary structures of small subunit ribosomal RNA from five microsporidia pathogenic to the silk worm, Bombyx mori JOURNAL Unpublished (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: D85501 BASE COUNT 404 a 168 c 290 g 385 t 4656 others ORIGIN 1 |~~~~~~~~~ ~~~~~CACCA GGU(UGA)UU CU|GCCUGA- C-GU-A-GAC --GCUAUUCC 61 CUAA|-GAUU AA-CCCAUGC A-UGU---UU UU|------- |-------(- ---)[----- 121 ---------- ---------- --gacauuu- ---------- ---------- -ga]------ 181 -----|---a aa|a-ugga- CUGCU-CAGU AAUA-CUUA- CUU-UAUU-- ----UAAUGU 241 ACAU<----- ---------- ---------- ---------- ---------- ---------- 301 u-ugaaa--A UAACUACGU( -U-A-AA)GU GUAGA-UAA- GA-------- ----(----) 361 ---------- -------(-- --)--|---- --<------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ------|--- ---------- ---------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 ---------- ---------- ---------- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- ---------- ---------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 ---------- ---------- ---------- ---------- ---------- ---------- 1021 -|-------- ---------- ---------- ---------- ---------- ---------- 1081 ---------> UGUGUACAGU -AA|GAGUAA GA|--CCU-A UCA--GCUA- --GUUGUUA- 1141 AG(-GUAAUG G)CUU-AACA A-|GGCAG-U GAC|GGGU-A A-CGGU|AUU -A-(CUUUG) 1201 UAA-U-AUU- CCG|GAGAAG G-AGC(CU-G AGAGACG)GC UACU-AAGUC (UAAG-)GAU 1261 -UGCAGC-A- ---------| GGG-GC-GA- AACUU-GACC -UAUGGA-U( --UUU---)U 1321 UCUG-A-GGC -|A|GUUAUG GGAA-GU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 -----<---- ---------- ---------- ---------- ---------- --aauauuau 1501 ---auuguuu -cau---auu -----guaaa a--------g uauaugaggu gauu->AAUU 1561 GGAG|GG-CA A-AU-C-AAG U-G(CCA-GC -AGCC|GC-G GU-AA)UACU UG-|UUCCAA 1621 G-AGUGUG|U AUGAU--GAU UGAUG-CAG| UUA--AAAAG UCCGUAGUUU |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---augauua ag--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -aagc|aaua ---------- 3001 --UGAGGUGU AC|--UGUAU AGUUGGG-AG -AAAG(AU-G AAA---)UGU G-ACGA-C-C 3061 CUGAC-UGG- A-CGAACA-G AAGC(-GAAA )--GC|U--- GUACAC-UU| GU-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUG ---UAUUUUU -UGA-A|CA- A-GGACGUAA 3301 GCUGGAGGA- GCGAAGAUG( AUUA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CA-U -UGUAG|UUC CA--GCA-GU AAACUAUGCC AAC|GA|--- 3421 --uguga-ua uga-u----- ----(----- auua-----) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- a-uu-gua-u -u-acau--- ---------- ----GAUA(- 3661 GAAA-)UUU- -GAGUUU-UU UGGC|-U|C- UGGGGAUAGU AU--GA-UC( --GCAA-)GA 3721 UUG-AAAAUU -AAAG--AAA -UUG|AC-GG -AA-GAAUA- -CCAC-AAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --A-GU|-GG 4021 AUUGUGCG|G CU-UAAUUUG (ACUCAA-CG )CGAG--GUA ACUUACCAAU AU[u---uua 4081 uuau-uuuga ga------ga auu(---uuc u--)-----a auuc------ -ga-gaa--u 4141 gau-aa---- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UA-GU- GGU-G-CAUG |GC-|GU-UU UCA|AUGGA- U|GCU(-GUG 4261 A-)AGU-UU- -UGA(UU-AA UU)UCAACA- AG-ACGUGAG ACCCU-UU|- ---------- 4321 ------(--- --)[uu---- ---------- ---------- ---------- -uua-uau-- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- ---------- ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ------aa]- --|------- ---------- GACA-GAC-A -C-A(----- 5041 ----auc-)A GUGU-A-GGA AGGA-AAGGA UUAAAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CCG-UU A|UGCC|CU- 5221 C-AGA-CAUU UUGG-GCUGC A-CGCGCAAU ACAAU--a-g a--------- ---------- 5281 ---(uauaua a---)[---- ---------- ---------- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- ---------- ---------- 5401 ---------- ---(-----) ---------- ---------- ------]--- ---------- 5461 ---------- u-c-u----- -UUA-U-GGG AUAAUAUUU( UGUAA--G)A GAUAUUUG-A 5521 ACUUGG-AAU U--GCUAGUA AA-UUU-UAU (-UAAAUAA- )GUAGA-A-U -UGAAUGUG- 5581 U-CCCUGUUC UU|UGUA-CA CACCGCC-GU CGCUAU-C-U AA-GAU---G AU-AUGU--- 5641 guu-gugaa- -auuagu--- ---------- ---------- ---------- ---------- 5701 -------(ga aa----)--- ---------- ---------- ---------- ---------- 5761 ---------- ------|acu acuugaacaa u--aug-u-a uUAG-AUCUG AU-AUAA-G- 5821 UCGUAACAAG GU-------- -----U-G-C UGUUGG(AGA A)CCAUUAGC AGGAUCA--- 5881 --UGA----- -------~|| ||| // LOCUS E.cunicu.1 5903 bp RNA RNA 11-JAN-191 DEFINITION Encephalitozoon cunuculi. ACCESSION No information KEYWORDS No information. SOURCE Encephalitozoon cunuculi. ORGANISM Encephalitozoon cunuculi. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: L07255 LOCUS EZOSRRNA 1299 bp ds-DNA INV 01-DEC-1992 DEFINITION Encephalitozoon cunuculi small ribosomal RNA gene. ACCESSION L07255 KEYWORDS small ribosomal RNA. SOURCE Encephalitozoon cunuculi DNA. ORGANISM Encephalitozoon cunuculi Eukaryota; Animalia; Protozoa; Microspora; Microsporea; Microsporida; Apansporoblastina. REFERENCE 1 (bases 1 to 1299) AUTHORS Hartskeerl,R.A., Schuitema,A.R., Van Gool,T. and Terpstra,W.J. TITLE Nucleotide sequence of the small ribosomal RNA gene from Encephalitozoon cuniculi JOURNAL Unpublished (1993) STANDARD full automatic FEATURES Location/Qualifiers primer_bind 1..23 /note="PCR primer based on V. necatrix srRNA sequence; putative" rRNA 1..1299 /product="small ribosomal RNA" primer_bind complement(1276..1299) /note="PCR primer based on V.necatrix srRNA sequence; putative" BASE COUNT 296 a 231 c 448 g 324 t ORIGIN BASE COUNT 296 a 231 c 448 g 324 t 4604 others ORIGIN 1 |~~~~~~~~~ ~~~~~CACCA GGU(UGA)UU CU|GCCUGA- C-GU-G-GAU --GCUAUUCU 61 CUGG|-GGCU AA-GCCAUGC A-UGC---UU GU|------- |-------(- ---)[----- 121 ---------- ---------- ---gaacuc- ---------- -uuug-uggg gga]------ 181 -----|---u ua|g-CGGA- CGGCU-CAGU GAUA-GCAC- GAU-GAUU-- ----UGUUUG 241 CGGG<----- ---------- ---------- ---------- ---------- ---------- 301 a>ugagca-G UAGCUGCGG( -G-A-AA)CU GCAGa-uag- ugguc----- ----(----) 361 ---------- -------(-- --)--|---- -- -UUGGCAAGU -AA|GUUGUG GG|--CCU-A UCA--GCUG- --GUAGUUA- 1141 GG(-GUAAUG G)CCU-AACU A-|GGCGC-A GAC|GGGA-U A-CGGG|GGA -U-(CAGG-) 1201 GUU-UGGUU- CCG|GAGAGG G-AGC(CU-G AGAGAUG)GC UACU-ACGUC (CAAG-)GAU 1261 -GGCAGC-A- ---------| GGC-GC-GA- AACUU-GCCU -AAUCC---( --uuug--)- 1321 -GGG-A-GGC -|G|GUUAUG AGAA-GU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 -----<---- ---------- ---------- ---------- ---------- --------ga 1501 ---ugugugu -gcg---agu -----gcaaa --------gg ggucgcaugu ----->GAUU 1561 GGAG|GG-CA A-GU-C-GGG U-G(CCA-GC -AGCC|GC-G GU-AA)UACC UG-|CUCCAA 1621 U-AGUGUC|U AUGGU--GGA UGCUG-CAG| UUA--AAAUG UCCGUAGUCU |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ------guug uguaugucuu 2821 -uguguguga -ug-uuugug guugugug-u ggauguagug --augugugu g---->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GCAg|aGga ---------- 3001 --CGAGGGGC AC|--UGGAU AGUUGGG-CG -AGAG(GU-G AAA---)UGC G-AAGA-C-C 3061 CUGAC-UGG- A-CGAGCG-G AAGC(-GAAG )--GC|U--- GUGCUC-UU| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------ACU ---AAUGUUG -CGA-U|GA- A-GGACGAAG 3301 GCUAGAGGA- UCGAAAUCG( AUUA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -UUUAG|UUC UA--GCA-GU AAACGAUGCC GAC|UG|--- 3421 --gacgggac a--------- ----(----- gug------) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- -----ugugu -u-gucc--- ---------- ----auGA(- 3661 GAAA-)UCUU -GAGUAU-GC GGGU|-U|C- UGGGGAUAGU AU--GC-UC( --GCAA-)GA 3721 GUGGAAACUU -GAAG--AGA -UUG|AC-GG -AA-GGACA- -CCAC-AAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --A-GU|-GG 4021 AGUGUGCG|G CU-UAAUUUG (ACUCAA-CG )CGGG--GCA ACUUACCGGC UC[uga-agg 4081 -augccu-gu ga-------g ugc(---aug ---)-----g cau------- --g-agg--c 4141 augcgg---- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|CG-GU- GGU-G-CAUG |GCC|GU-UU UAA|AUGGA- U|GGC(-GUG 4261 A-)GCU-UU- -GUC(UU-AA GU)UGCGUA- AG-AUGUGAG ACCCU-UU|- ---------- 4321 ------(--- --)[------ ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- ---------- ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- --------]- --|------- ---------- GACG-GUG-U -U-C(----- 5041 ---uacg-)G AGCA-A-GGA GGGG-AUGGA AAAGAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CCG-UU A|UGCC|CU- 5221 G-AGA-UGAG GCGG-GCUGC A-CGCGCACU ACGAU--a-g auggcg---- ---------- 5281 ---(-cuuc- ----)[---- ---------- ---------- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- ---------- ---------- 5401 ---------- ---(-----) ---------- ---------- ------]--- ---------- 5461 -----ugccu g-c-U----- -GUG-A-GGG AUGAAGCUG( UGUAA--G)G GGCUUCUG-A 5521 ACGUGG-AAU U--CCUAGUA AU-AGC-GGC (-UGACGAA- )GCUGC-U-U -UGAAUGUG- 5581 U-CCCUGUCC UU|UGUA-CA CACCGCCCGU CGCUAU-C-U AA-GAU---G AC-GCAC--- 5641 ugg-acgaa- -gauc----- ---------- ---------- ---------- ---------- 5701 -------(gg aa----)--- ---------- ---------- ---------- ---------- 5761 ---------- ------|gg- -ucugagucc u--gag-u-g uUAG-aUAAG AU-AUAA-G- 5821 UCGUAACAUG GC-------- -----U-G-C UGUUGG(AGA A)CCAUUAGC AGGAUCA--- 5881 --UAA~~~~~ ~~~~~~~~|| ||| // LOCUS E.cunicu.2 5903 bp RNA RNA 17-AUG-1998 DEFINITION Encephalitozoon cuniculi.. ACCESSION No information KEYWORDS No information. SOURCE Encephalitozoon cuniculi. ORGANISM Encephalitozoon cuniculi. REFERENCE 1 (bases 1 to 1247) AUTHORS Peyretaillade,E., Biderre,C., Peyret,P., Duffieux,F., Metenier ,G., Gouy,M., Michot,B. and Vivares,C.P. TITLE Microsporidian Encephalitozoon cuniculi, a unicellular eukaryote, with a unusual chromosomal dispersion of ribosomal genes and a LSU rRNA reduced to the universal core JOURNAL Nucleic Acids Res. 26, 3513-3520 (1998) STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: AJ005581 LOCUS ECU5581 8871 bp DNA INV 17-AUG-1998 DEFINITION Encephalitozoon cuniculi complete rDNA unit (16S, 5.8S, 23S, ITS1 and IGS). ACCESSION AJ005581 NID g3426080 KEYWORDS 16S ribosomal RNA; 16S rRNA gene; 23S ribosomal RNA; 23S rRNA gene; 5.8S ribosomal RNA; 5.8S rRNA gene; IGS; intergenic spacer; internal transcribed spacer 1; ITS1; large subunit; small subunit. SOURCE Encephalitozoon cuniculi. ORGANISM Encephalitozoon cuniculi Eukaryota; Microsporidia; Unikaryonidae; Encephalitozoon. REFERENCE 1 (bases 1 to 8871) AUTHORS Peyretaillade,E., Biderre,C., Peyret,P., Duffieux,F., Metenier,G., Gouy,M., Michot,B. and Vivares,C.P. TITLE Microsporidian Encephalitozoon cuniculi, a unicellular eukaryote, with a unusual chromosomal dispersion of ribosomal genes and a LSU rRNA reduced to the universal core JOURNAL Nucleic Acids Res. 26, 3513-3520 (1998) REFERENCE 2 (bases 1 to 8871) AUTHORS Peyretaillade,E. TITLE Direct Submission JOURNAL Submitted (16-APR-1998) Peyretaillade E., LBCP UPESA CNRS 6023, Laboratoire de Protistologie Mol. et Cell., Universite Blaise Pascal Clermont Ferrand II, 63177 Aubiere cedex, FRANCE FEATURES Location/Qualifiers source 1..8871 /organism="Encephalitozoon cuniculi" /db_xref="taxon:6035" misc_feature 1..1748 /note="intergenic spacer, IGS" rRNA 1749..3048 /product="small subunit ribosomal RNA" misc_feature 3049..3083 /note="internal transcribed spacer 1, ITS1" rRNA 3084..5570 /note="5.8S and large subunit genes" /product="5.8S ribosomal RNA and large subunit ribosomal RNA" misc_feature 5571..8871 /note="integenic spacer, IGS" BASE COUNT 1480 a 1799 c 2994 g 2597 t 1 others BASE COUNT 294 a 231 c 451 g 324 t 4603 others ORIGIN 1 |~~~~~~~~~ ~~~~~CAUCA GGU(UGA)UU CU|GCCUGA- C-GU-G-GAU --GCUAUUCU 61 CUGG|-GGCU AA-GCCAUGC A-UGC---UU GU|------- |-------(- ---)[----- 121 ---------- ---------- ---gaacuc- ---------- -uuug-uggg gga]------ 181 -----|---U UA|G-CGGA- CGGCU-CAGU GAUA-GCAC- GAU-GAUU-- ----UGUUUG 241 CGGG<----- ---------- ---------- ---------- ---------- ---------- 301 a>ugagca-G UAGCUGCGG( -G-A-AA)CU GCAGa-uag- ugguc----- ----(----) 361 ---------- -------(-- --)--|---- -- -UUGGCAAGU -AA|GUUGUG GG|--CCU-A UCA--GCUG- --GUAGUUA- 1141 GG(-GUAAUG G)CCU-AACU A-|GGCGC-A GAC|GGGA-U A-CGGG|GGA -U-(CAGG-) 1201 GUU-UGGUU- CCG|GAGAGG G-AGC(CU-G AGAGAUG)GC UACU-ACGUC (CAAG-)GAU 1261 -GGCAGC-A- ---------| GGC-GC-GA- AACUU-GCCU -AAUCC---( --uuug--)- 1321 -GGG-A-GGC -|G|GUUAUG AGAA-GU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 -----<---- ---------- ---------- ---------- ---------- --------ga 1501 ---ugugugu -gcg---agu -----gcaaa --------gg ggucgcaugu ----->GAUU 1561 GGAG|GG-CA A-GU-C-GGG U-G(CCA-GC -AGCC|GC-G GU-AA)UACC UG-|CUCCAA 1621 U-AGUGUC|U AUGGU--GGA UGCUG-CAG| UUA--AAAUG UCCGUAGUCU |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ------guug uguaugucuu 2821 -uguguguga -ug-uuugug guugugug-u ggauguagug --augugugu g---->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GCAg|aGga ---------- 3001 --CGAGGGGC AC|--UGGAU AGUUGGG-CG -AGAG(GU-G AAA---)UGC G-AAGA-C-C 3061 CUGAC-UGG- A-CGAGCG-G AAGC(-GAAG )--GC|U--- GUGCUC-UU| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------ACU ---AAUGUUG -CGA-U|GA- A-GGACGAAG 3301 GCUAGAGGA- UCGAAAUCG( AUUA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -UUUAG|UUC UA--GCA-GU AAACGAUGCC GAC|UG|--- 3421 --gacgggac a--------- ----(----- gug------) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- -----ugugu -u-gucc--- ---------- ----auGA(- 3661 GAAA-)UCUU -GAGUAU-GC GGGU|-U|C- UGGGGAUAGU AU--GC-UC( --GCAA-)GA 3721 GUG-AAACUU -GAAG--AGA -UUG|AC-GG -AA-GGACA- -CCAC-AAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --A-GU|-GG 4021 AGUGUGCG|G CU-UAAUUUG (ACUCAA-CG )CGGG--GCA ACUUACCGGC UC[uga-agg 4081 -augccu-gu ga-------g ugc(---aug ---)-----g cau------- --g-agg--c 4141 augcgg---- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|CG-GU- GGU-G-CAUG |GCC|GU-UU UAA|AUGGA- U|GGC(-GUG 4261 A-)GCU-UU- -GUC(UU-AA GU)UGCGUA- AG-AUGUGAG ACCCU-UU|- ---------- 4321 ------(--- --)[------ ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- ---------- ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- --------]- --|------- ---------- GACG-GUG-U -U-C(----- 5041 ---uacg-)G AGCA-A-GGA GGGG-AUGGA AGAGAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CCG-UU A|UGCC|CU- 5221 G-AGA-UGAG GCGG-GCUGC A-CGCGCACU ACGAU--a-g auggcg---- ---------- 5281 ---(-cuuc- ----)[---- ---------- ---------- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- ---------- ---------- 5401 ---------- ---(-----) ---------- ---------- ------]--- ---------- 5461 -----ugccu g-c-U----- -GUG-A-GGG AUGAAGCUG( UGUAA--G)G GGCUUCUG-A 5521 ACGUGG-AAU U--CCUAGUA AU-AGC-GGC (-UGACGAA- )GCUGC-U-U -UGAAUGUG- 5581 U-CCCUGUCC UU|UGUA-CA CACCGCCCGU CGCUAU-C-U AA-GAU---G AC-GCAC--- 5641 ugg-acgaa- -gauc----- ---------- ---------- ---------- ---------- 5701 -------(gg aa----)--- ---------- ---------- ---------- ---------- 5761 ---------- ------|gg- -ucugagucc u--gag-u-g uUAG-aUAAG AU-AUAA-G- 5821 UCGUAACAUG GC-------- -----U-G-C UGUUGG(AGA A)CCAGCAGC AGGAUCA--- 5881 --guau~~~~ ~~~~~~~~|| ||| // LOCUS E.cunicu.3 5903 bp RNA RNA 11-JAN-191 DEFINITION Encephalitozoon cuniculi. ACCESSION No information KEYWORDS No information. SOURCE Encephalitozoon cuniculi. ORGANISM Encephalitozoon cuniculi. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: L17072 LOCUS EZORGSMALL 1299 bp ds-DNA INV 27-MAY-1993 DEFINITION Encephalitozoon cuniculi small ribosomal RNA gene, complete. ACCESSION L17072 KEYWORDS 18S ribosomal RNA; small ribosomal RNA; srRNA. SOURCE Encephalitozoon cuniculi DNA. ORGANISM Encephalitozoon cuniculi Eukaryota; Animalia; Protozoa; Microspora; Haplophasea; Glugeida; Encephalitozoonidae. REFERENCE 1 (bases 1 to 1299) AUTHORS Pieniazek,N.J., Moura,H., Slemenda,S.B. and Visvesvara,G.S. TITLE Differentiation of microsporidial opportunistic parasites Encephalitozoon cuniculi and E. hellem by amplification of the small ribosomal RNA coding region JOURNAL Unpublished (1993) STANDARD full automatic FEATURES Location/Qualifiers primer_bind 1..21 /standard_name="PCR primer based on V. necatrix srRNA" /note="putative" rRNA 1..1299 /standard_name="srRNA; 18S rRNA-like" /product="small ribosomal RNA" /note="putative" primer_bind complement(1273..1299) /standard_name="PCR primer based on V. necatrix srRNA" /note="putative" source 1..1299 /organism="Encephalitozoon cuniculi" /sequenced_mol="DNA" /note="rabbit isolate provided by J.A. Shadduck and E.S. Didier" BASE COUNT 295 a 231 c 449 g 324 t ORIGIN BASE COUNT 295 a 231 c 449 g 324 t 4604 others ORIGIN 1 |~~~~~~~~~ ~~~~~CACCA GGU(UGA)UU CU|GCCUGA- C-GU-G-GAU --GCUAUUCU 61 CUGG|-GGCU AA-GCCAUGC A-UGC---UU GU|------- |-------(- ---)[----- 121 ---------- ---------- ---gaacuc- ---------- -uuug-uggg gga]------ 181 -----|---U UA|G-CGGA- CGGCU-CAGU GAUA-GCAC- GAU-GAUU-- ----UGUUUG 241 CGGG<----- ---------- ---------- ---------- ---------- ---------- 301 a>ugagca-G UAGCUGCGG( -G-A-AA)CU GCAGa-uag- ugguc----- ----(----) 361 ---------- -------(-- --)--|---- -- -UUGGCAAGU -AA|GUUGUG GG|--CCU-A UCA--GCUG- --GUAGUUA- 1141 GG(-GUAAUG G)CCU-AACU A-|GGCGC-A GAC|GGGA-U A-CGGG|GGA -U-(CAGG-) 1201 GUU-UGGUU- CCG|GAGAGG G-AGC(CU-G AGAGAUG)GC UACU-ACGUC (CAAG-)GAU 1261 -GGCAGC-A- ---------| GGC-GC-GA- AACUU-GCCU -AAUCC---( --uuug--)- 1321 -GGG-A-GGC -|G|GUUAUG AGAA-GU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 -----<---- ---------- ---------- ---------- ---------- --------ga 1501 ---ugugugu -gcg---agu -----gcaaa g-------gg gucgcaugu- ----->GAUU 1561 GGAG|GG-CA A-GU-C-GGG U-G(CCA-GC -AGCC|GC-G GU-AA)UACC UG-|CUCCAA 1621 U-AGUGUC|U AUGGU--GGA UGCUG-CAG| UUA--AAAUG UCCGUAGUCU |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ------guug uguaugucuu 2821 -uguguguga -ug-uuugug guugugug-u ggauguagug --augugugu g---->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GCAg|aGga ---------- 3001 --CGAGGGGC AC|--UGGAU AGUUGGG-CG -AGAG(GU-G AAA---)UGC G-AAGA-C-C 3061 CUGAC-UGG- A-CGAGCG-G AAGC(-GAAG )--GC|U--- GUGCUC-UU| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------ACU ---AAUGUUG -CGA-U|GA- A-GGACGAAG 3301 GCUAGAGGA- UCGAAAUCG( AUUA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -UUUAG|UUC UA--GCA-GU AAACGAUGCC GAC|UG|--- 3421 --gacgggac a--------- ----(----- gug------) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- -----ugugu -u-gucc--- ---------- ----auGA(- 3661 GAAA-)UCUU -GAGUAU-GC GGGU|-U|C- UGGGGAUAGU AU--GC-UC( --GCAA-)GA 3721 GUG-AAACUU -GAAG--AGA -UUG|AC-GG -AA-GGACA- -CCAC-AAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --A-GU|-GG 4021 AGUGUGCG|G CU-UAAUUUG (ACUCAA-CG )CGGG--GCA ACUUACCGGC UC[uga-agg 4081 -augccu-gu ga-------g ugc(---aug ---)-----g cau------- --g-agg--c 4141 augcgg---- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|CG-GU- GGU-G-CAUG |GCC|GU-UU UAA|AUGGA- U|GGC(-GUG 4261 A-)GCU-UU- -GUC(UU-AA GU)UGCGUA- AG-AUGUGAG ACCCU-UU|- ---------- 4321 ------(--- --)[------ ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- ---------- ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- --------]- --|------- ---------- GACG-GUG-U -U-C(----- 5041 ---uacg-)G AGCA-A-GGA GGGG-AUGGA AGAGAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CCG-UU A|UGCC|CU- 5221 G-AGA-UGAG GCGG-GCUGC A-CGCGCACU ACGAU--A-g auggcg---- ---------- 5281 ---(-cuuc- ----)[---- ---------- ---------- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- ---------- ---------- 5401 ---------- ---(-----) ---------- ---------- ------]--- ---------- 5461 -----ugccu g-c-u----- -GUG-A-GGG AUGAAGCUG( UGUAA--G)G GGCUUCUG-A 5521 ACGUGG-AAU U--CCUAGUA AU-AGC-GGC (-UGACGAA- )GCUGC-U-U -UGAAUGUG- 5581 U-CCCUGUCC UU|UGUA-CA CACCGCCCGU CGCUAU-C-U AA-GAU---G AC-GCAC--- 5641 ugg-acgaa- -gauc----- ---------- ---------- ---------- ---------- 5701 -------(gg aa----)--- ---------- ---------- ---------- ---------- 5761 ---------- ------|gg- -ucugagucc u--gag-u-g uUAG-AUAAG AU-AUAA-G- 5821 UCGUAACAUG GC-------- -----U-G-C UGUUGG(AGA A)CCAUUAGC AGGAUCA--- 5881 --UAA~~~~~ ~~~~~~~~|| ||| // LOCUS E.cunicu.4 5903 bp RNA RNA 11-JAN-191 DEFINITION Encephalitozoon cuniculi. ACCESSION No information KEYWORDS No information. SOURCE Encephalitozoon cuniculi. ORGANISM Encephalitozoon cuniculi. REFERENCE 1 (bases 1 to 1247) AUTHORS Charlie Vossbrinck JOURNAL No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: L39107 LOCUS EZORGOA 1298 bp DNA INV 24-AUG-1995 DEFINITION Encephalitozoon cuniculi small subunit ribosomal RNA gene. ACCESSION L39107 KEYWORDS PCR primer; small subunit ribosomal RNA. SOURCE Encephalitozoon cuniculi DNA. ORGANISM Encephalitozoon cuniculi Eukaryotae; Microsporidia; Microsporea; Microsporida; Apansporoblastina; Unikaryonidae; Encephalitozoon. REFERENCE 1 (bases 1 to 1298) AUTHORS Baker,M.D., Vossbrinck,C.R., Didier,E.S. and Shadduck,J.A. TITLE Small subunit ribosomal DNA phylogeny of various microsporidia with emphasis on AIDS related forms JOURNAL J. Eukaryot. Microbiol. (1995) In press COMMENT NCBI gi: 954753 FEATURES Location/Qualifiers source 1..1298 /organism="Encephalitozoon cuniculi" /sequenced_mol="DNA" rRNA 1..1298 /note="putative" /product="small subunit ribosomal RNA" primer_bind 1..18 /note="based on small subunit ribosomal RNA of Vairimorpha necatrix; PCR primer binding site; putative" primer_bind complement(1278..1298) /note="PCR primer binding site; based on small subunit ribosomal RNA of Vairimorpha necatrix; putative" BASE COUNT 295 a 231 c 447 g 325 t ORIGIN BASE COUNT 295 a 231 c 447 g 325 t 4605 others ORIGIN 1 |~~~~~~~~~ ~~~~~CACCA GGU(UGA)UU CU|GCCUGA- C-GU-G-GAU --GCUAUUCU 61 CUGG|-GGCU AA-GCCAUGC A-UGC---UU GU|------- |-------(- ---)[----- 121 ---------- ---------- ---gaacuc- ---------- -uuug-uggg gga]------ 181 -----|---U UA|G-CGGA- CGGCU-CAGU GAUA-GCAC- GAU-GAUU-- ----UGUUUG 241 CGGG<----- ---------- ---------- ---------- ---------- ---------- 301 a>ugagca-G UAGCUGCgg( -G-A-AA)CU GCAGa-uag- ugguc----- ----(----) 361 ---------- -------(-- --)--|---- -- -UUGGCAAGU -AA|GUUGUG GG|--CCU-A UCA--GCUG- --GUAGUUA- 1141 GG(-GUAAUG G)CCU-AACU A-|GGCGC-A GAC|GGGA-U A-CGGG|GGA -U-(CAGG-) 1201 GUU-UGGUU- CCG|GAGAGG G-AGC(CU-G AGAGAUG)GC UACU-ACGUC (CAAG-)GAU 1261 -GGCAGC-A- ---------| GGC-GC-GA- AACUU-GCCU -AAUCC---( --uuug--)- 1321 -GGG-A-GGC -|G|GUUAUG AGAA-GU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 -----<---- ---------- ---------- ---------- ---------- --------ga 1501 ---ugugugu -gcg---agu -----gcaaa g-------gg gucgcaugu- ----->GAUU 1561 GGAG|GG-CA A-GU-C-GGG U-G(CCA-GC -AGCC|GC-G GU-AA)UACC UG-|CUCCAA 1621 U-AGUGUC|U AUGGU--GGA UGCUG-CAG| UUA--AAAUG UCCGUAGUCU |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ------guug uguaugucuu 2821 -uguguguga -ug-uuugug guugugug-u ggauguagug --augugugu g---->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GCAg|aGga ---------- 3001 --CGAGGGGC AC|--UGGAU AGUUGGG-CG -AGAG(GU-G AAA---)UGC G-AAGA-C-C 3061 CUGAC-UGG- A-CGAGCG-G AAGC(-GAAG )--GC|U--- GUGCUC-UU| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------ACU ---AAUGUUG -CGA-U|GA- A-GGACGAAG 3301 GCUAGAGGA- UCGAAAUCG( AUUA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -UUUAG|UUC UA--GCA-GU AAACGAUGCC GAC|UG|--- 3421 --gacgggac u--------- ----(----- gug------) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- -----ugugu -u-gucc--- ---------- ----auGA(- 3661 GAAA-)UCUU -GAGUAU-GC GGGU|-U|C- UGGGGAUAGU AU--GC-UC( --GCAA-)GA 3721 GUG-AAACUU -GAAG--AGA -UUG|AC-GG -AA-GGACA- -CCAC-AAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --A-GU|-GG 4021 AGUGUACG|G CU-UAAUUUG (ACUCAA-CG )CGGG--GCA ACUUACCGGC UC[uga-agg 4081 -augccu-gu ga-------g ugc(---aug ---)-----g cau------- --g-agg--c 4141 augcg----- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|CG-GU- GGU-G-CAUG |GCC|GU-UU UAA|AUGGA- U|GGC(-GUG 4261 A-)GCU-UU- -GUC(UU-AA GU)UGCGUA- AG-AUGUGAG ACCCU-UU|- ---------- 4321 ------(--- --)[------ ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- ---------- ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- --------]- --|------- ---------- GACG-GUG-U -U-C(----- 5041 ---UACG-)G AGCA-A-GGA GGGG-AUGGA AGAGAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CCG-UU A|UGCC|CU- 5221 G-AGA-UGAG GCGG-GCUGC A-CGCGCACU ACGAU--a-g auggcg---- ---------- 5281 ---(-cuuc- ----)[---- ---------- ---------- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- ---------- ---------- 5401 ---------- ---(-----) ---------- ---------- ------]--- ---------- 5461 -----ugccu g-c-u----- -GUG-A-GGG AUGAAGCUG( UGUAA--G)G GGCUUCUG-A 5521 ACGUGG-AAU U--CCUAGUA AU-AGC-GGC (-UGACGAA- )GCUGC-U-U -UGAAUGUG- 5581 U-CCCUGUCC UU|UGUA-CA CACCGCCCGU CGCUAU-C-U AA-GAU---G AC-GCAC--- 5641 ugg-acgaa- -gauc----- ---------- ---------- ---------- ---------- 5701 -------(gg aa----)--- ---------- ---------- ---------- ---------- 5761 ---------- ------|gg- -ucugagucc u--gag-u-g uUAG-AUAAG AU-AUAA-G- 5821 UCGUAACAUG GC-------- -----U-G-C UGUUGG(AGA A)CCAUUAGC AGGAUCA--- 5881 --UAA~~~~~ ~~~~~~~~|| ||| // LOCUS E.cunicu.5 5903 bp RNA RNA 11-JAN-191 DEFINITION Encephalitozoon cuniculi. ACCESSION No information KEYWORDS No information. SOURCE Encephalitozoon cuniculi. ORGANISM Encephalitozoon cuniculi. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: Z19563 ID ECSRRNAX standard; DNA; INV; 1273 BP. XX AC Z19563; XX DT 29-MAR-1993 (Rel. 35, Created) DT 29-MAR-1993 (Rel. 35, Last updated, Version 2) XX DE E.cuniculi gene for small ribosomal RNA XX KW small ribosomal RNA. XX OS Encephalitozoon cuniculi OC Eukaryota; Animalia; Protozoa; Microspora; Microsporea; OC Microsporida; Apansporoblastina. XX RN [1] RP 1-1273 RA Tanowitz H., Zhu X., Wittner M., Cali A., Weiss L.; RT "Nucleotide sequences of the small ribosomal RNA of RT Encephalitozoon cuniculi"; RL Nucleic Acids Res. 21:1315-1315(1993). XX RN [2] RP 1-1273 RA Weiss L.; RT ; RL Submitted (11-JAN-1993) on tape to the EMBL Data Library by: RL Weiss L., Albert Einstein College of Medicine, Pathology, 1300 RL Morris Park Avenue, Bronx, New York, N.Y, U.S.A, 10461 XX CC *source: clone=Ec7, Ec8; XX FH Key Location/Qualifiers FH FT allele replace(1..1273,"") FT rRNA 1..1273 FT /product="small ribosomal RNA" XX SQ Sequence 1273 BP; 291 A; 224 C; 438 G; 320 T; 0 other; BASE COUNT 291 a 224 c 438 g 320 t 4630 others ORIGIN 1 |~~~~~~~~~ ~~~~~CACCA GGU(UGA)UU CU|GCCUGA- C-GU-G-GAG --GCUAUUCU 61 CUGG|-GGCU AA-GCCAUGC A-UGC---UU GU|------- |-------(- ---)[----- 121 ---------- ---------- ---gaacuc- ---------- -uuug-uggg gga]------ 181 -----|---U UA|G-CGGA- CGGCU-CAGU GAUA-GCAC- GAU-GAUU-- ----UGUUUG 241 CGGG<----- ---------- ---------- ---------- ---------- ---------- 301 a>ugagca-G UAGCUGCGG( -G-A-AA)CU GCAGa-uag- ugguc----- ----(----) 361 ---------- -------(-- --)--|---- -- -UUGGCAAGU -AA|GUUGUG GG|--CCU-A UCA--GCUG- --GUAGUUA- 1141 GG(-GUAAUG G)CCU-AACU A-|GGCGC-A GAC|GGGA-U A-CGGG|GGA -U-(CAGG-) 1201 GUU-UGGUU- CCG|GAGAAG G-AGC(CU-G AGAGAUG)GC UACU-ACGUC (CAAG-)GAC 1261 -GGCAGC-A- ---------| GGC-GC-GA- AACUU-GCCU -AAUCC---( --uuug--)- 1321 -GGG-A-GGC -|G|GUUAUG AGAA-GU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 -----<---- ---------- ---------- ---------- ---------- --------ga 1501 ---ug-gugu -gcg---agu ----gcaaag gga--auggc uauuguu--g uau-->G-UU 1561 GGAG|GG-CA A-GCUC-GGG U-G(CCA-GC -AGCC|GC-G GU-UA)AUUG AA-|UCCUGC 1621 C-AAUUGG|G UUGAU--GGA UGCUG-CCG| UUA--AAAUG UCCGUAGUCU |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ------guug uguaugucuu 2821 -uguguguga -ug-uuugug guugugug-u ggauguagug --augugugu g---->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GCAg|aGga ---------- 3001 --CGAGGGGC AC|--UGGAU AGUUGGG-CG -AGAG(GU-G AAA---)UGC G-AAGA-C-C 3061 CUGAC-UGG- A-CGAGCG-G AA--(-GA-G )--GC|U--- GUGCUC-UU| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------ACU aauguUGUUG -CGA-U|GA- A-GGACGAAG 3301 GCUAGAGGA- UCGAAAACG( AUUA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -UUUAG|UUC UA--GCA-GU AAACGAUGCC GAC|UG|--- 3421 --gacggguc a--------- ----(----- gug------) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- -----ugugu -u-g-cc--- ---------- ----auGA(- 3661 GAAA-)UCUU -GAGUAU-GC GGGU|-U|C- UGGGGAUAGU AU--GC-UC( --GCAA-)GA 3721 GUG-AAACUU -GAAG--AGA -UUG|AC-GG -AA-GGACA- -CCAC-AAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --C-GU|-GG 4021 AGUGUGCG|G CU-UAAUUUG (ACUCAA-CG )CGGG--GCA ACUUACCGGC UC[uga-agg 4081 aaugccu-gu ga-------- ggc(---aug ---)-----g cauu------ -----gg--c 4141 augcgg---- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|CG-GU- GGU-G-CAUG |GGC|CU-UU UAA|AUGGA- U|GGC(-GUG 4261 A-)-CU-UU- -GUC(UU-AA GU)UGCGUA- AG-AUGUGAG ACCCU-UU|- ---------- 4321 ------(--- --)[------ ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- ---------- ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- --------]- --|------- ---------- GACG-GUG-U -U-C(----- 5041 ---uac--)G AAGC-A-AGG AGGG-AUGGA AGAGAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CCG-UU A|UGCC|CU- 5221 G-AGA-UGAG GCGG-GCUGC A-CGCGCAAC UAGAU--A-g auggcg---- ---------- 5281 ---(-cuuc- ----)[---- ---------- ---------- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- ---------- ---------- 5401 ---------- ---(-----) ---------- ---------- ------]--- ---------- 5461 -----ugccu g-c-u----- -GUG-AgGGG AUGAAGCUG( UGUAA--G)G GGCUUCUG-A 5521 ACGUGG-AAU U--CCUAGUA AU-AGC-GGC (-UGACGAA- )GCUGC-U-U -UGAAUGUG- 5581 U-CCCUGUCC UU|UGUA-CA CACCGCCCGU CGCUAU-C-U AA-GAU---G AC-GCAC--- 5641 uggaacgaa- -gauc----- ---------- ---------- ---------- ---------- 5701 -------(gg aa----)--- ---------- ---------- ---------- ---------- 5761 ---------- ------|gg- -ucugagucc u--gag-u-g uUAG-AUAAG AU-AUAA-G- 5821 UCGUAACAAG GU-------- -----A-A-N NNNNNN(NNN N)NNNNNNNN NNNNNNN--- 5881 --nnn~~~~~ ~~~~~~~~|| ||| // LOCUS E.hellem.1 5903 bp RNA RNA 11-JAN-191 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: L19070 LOCUS EZOSRRNAX 1314 bp ds-DNA INV 03-JUN-1993 DEFINITION Encephalitozoon hellem small ribosomal RNA gene sequence. ACCESSION L19070 KEYWORDS 18S-like rRNA; small ribosomal RNA. SOURCE Encephalitozoon hellem (library: CDC 0291.V213; from Dr. E.S. Didier) DNA. ORGANISM Encephalitozoon hellem Eukaryota; Animalia; Protozoa; Microspora; Haplophasea; Glugeida; Encephalitozoonidae. REFERENCE 1 (bases 1 to 1314) AUTHORS Pieniazek,N.J., Moura,H., Slemenda,S.B. and Visvesvara,G.S. TITLE Differentiation of microsporidial opportunistic parasites Encephalitozoon cuniculi and E. hellem by amplification of the small ribosomal RNA coding region JOURNAL Unpublished (1993) STANDARD full automatic FEATURES Location/Qualifiers primer_bind 1..21 /note="PCR primer based on V. necatrix srRNA; putative" rRNA 1..1314 /product="small ribosomal RNA" /note="18S rRNA-like srRNA; putative" primer_bind complement(1288..1314) /note="PCR primer based on V. necatrix srRNA; putative" source 1..1314 /organism="Encephalitozoon hellem" /sequenced_mol="DNA" /tissue_lib="CDC 0291.V213; from Dr. E.S. Didier" BASE COUNT 323 a 208 c 423 g 360 t ORIGIN BASE COUNT 323 a 208 c 423 g 360 t 4589 others ORIGIN 1 |~~~~~~~~~ ~~~~~CACCA GGU(UGA)UU CU|GCCUGA- C-GU-G-GAU --GCUAUUCU 61 CUGG|-GGCU AA-GCCAUGC A-UGU---UU AU|------- |-------(- ---)[----- 121 ---------- ---------- ---gaagcc- ---------- -uuua-uggg gga]------ 181 -----|---U UG|A-CGGA- CGGCU-CAGU GAUA-GUAC- GAU-GAUU-- ----UGAUUG 241 GGAG<----- ---------- ---------- ---------- ---------- ---------- 301 c>cuggau-G UAACUGUGG( -G-A-AA)CU GCAGg-uaa- guucu----- ----(----) 361 ---------- -------(-- --)--|---- -- -GUACCGAGU -AA|GUUGUA GG|--CCU-A UCA--GCUG- --GUAGUUA- 1141 GG(-GUAAUG G)CCU-AACU A-|GGCGG-A GAC|GGGA-G A-CGGG|GGA -U-(CAGG-) 1201 GUU-UGAUU- CCG|GAGAGG G-AGC(CU-G AGAGAUG)GC UACU-ACGUC (CAAG-)GAU 1261 -GGCAGC-A- ---------| GGC-GC-GA- AACUU-GCCU -AAUCCU--( --uauu--)- 1321 GGGG-A-GGC -|G|GUUAUG AGAA-GU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 -----<---- ---------- ---------- ---------- ---------- ------aaga 1501 ---uguuua- -gca---agu -----auaaa u-------uu guugugauu- ----->UACU 1561 GGAG|GG-CA A-GU-C-GGG U-G(CCA-GC -AGCC|GC-G GU-AA)UACC UG-|CUCCAG 1621 U-AGUGUC|U AUGGU--GAA UGCUG-CAG| UUA--AAAUG UCCGUAGUUG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- --------uu uguaugucuu 2821 -uu-gaguga -ug-uuuaug guuuuuag-u ggauguaguu --uuauugua ----->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GCAg|aGga ---------- 3001 --CGAGGGGC AC|--UGGAU AGUUGGG-CG -AGGG(GU-G AAA---)UAC G-AAGA-C-C 3061 CUGAC-UGG- A-CGAAGA-G AAGC(-GAAG )--GC|U--- GUGUUC-UU| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------ACU ---UUUGUGG -UGA-U|GA- A-GGACGAAG 3301 GCUAGAGGA- UCGAAAUCG( AUUA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -UUUAG|UUC UA--GCA-GU AAACGAUGCC GAC|UG|--- 3421 --gacgggac u--------- ----(----- guuuu----) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- -----agugu -u-gucc--- ---------- ----GAGA(- 3661 GAAA-)UCUU -AAGUAU-GU GGGU|-U|C- UGGGGAUAGU AU--GC-UC( --GCAA-)GA 3721 GUG-AAACUU -GAAG--AGA -UUG|AC-GG -AA-GGACA- -CCAC-AAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --A-GU|-GG 4021 AGUGUGCG|G CU-UAAUUUG (ACUCAA-CG )CGGG--GCA ACUUACCGGU UC[uga-ag- 4081 ugagugu-ga ga-------g ugu(--uuuu ---)-----a cau------- --g-aug--c 4141 uuacgg---- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|CG-GU- GGU-G-CAUG |GCC|GU-UU UAA|AUGGA- U|GGC(-GUG 4261 A-)GCU-UU- -GGA(UU-AA GU)UACGUA- AG-AUGUGAG ACCCU-UU|- ---------- 4321 ------(--- --)[------ ---------- ---------- ---------- -uu------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- ---------- ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- --------]- --|------- ---------- GACU-GUG-C -U-C(----- 5041 ---uaug-)G GGCA-A-GGG AGGA-AUGGA ACAGAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CCG-UU A|UGCC|CU- 5221 G-AGA-UGAA GCGG-GCGGC A-CGCGCACU ACGAU--a-g augccu---- ---------- 5281 ---(-augu- ----)[---- ---------- ---------- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- ---------- ---------- 5401 ---------- ---(-----) ---------- ---------- ------]--- ---------- 5461 -----gggcu a-c-U----- -GUG-A-GGG AUGAAGCUG( UGUAA--U)G GGCUUCUG-A 5521 ACGUGG-AAU U--CCUAGUA AG-AAU-GAU (-UGAACAA- )GUUAU-U-U -UGAAUGUG- 5581 U-CCCUGUCC UU|UGUA-CA CACCGCCCGU CGCUAU-C-U AA-GAU---G AC-GCAG--- 5641 ugg-acgaa- -gauu----- ---------- ---------- ---------- ---------- 5701 -------(ga ga----)--- ---------- ---------- ---------- ---------- 5761 ---------- ------|gg- -ucugagucu u--ucg-u-g uUAG-AUAAG AU-AUAA-G- 5821 UCGUAACAUG GC-------- -----U-G-C UGUUGG(AGA A)CCAUUAGC AGGAUCA--- 5881 --UAA~~~~~ ~~~~~~~~|| ||| // LOCUS E.hellem.2 5903 bp RNA RNA 11-JAN-191 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: L39108 LOCUS EZORGOB 1314 bp DNA INV 24-AUG-1995 DEFINITION Encephalitozoon hellem small subunit ribosomal RNA gene. ACCESSION L39108 KEYWORDS PCR primer; small subunit ribosomal RNA. SOURCE Encephalitozoon hellem DNA. ORGANISM Encephalitozoon hellem Eukaryotae; Microsporidia; Microsporea; Microsporida; Apansporoblastina; Unikaryonidae; Encephalitozoon. REFERENCE 1 (bases 1 to 1314) AUTHORS Baker,M.D., Vossbrinck,C.R., Didier,E.S. and Shadduck,J.A. TITLE Small subunit ribosomal DNA phylogeny of various microsporidia with emphasis on AIDS related forms JOURNAL J. Eukaryot. Microbiol. (1995) In press COMMENT NCBI gi: 954754 FEATURES Location/Qualifiers source 1..1314 /organism="Encephalitozoon hellem" /sequenced_mol="DNA" rRNA 1..1314 /note="putative" /product="small subunit ribosomal RNA" primer_bind 1..18 /note="based on small subunit ribosomal RNA of Vairimorpha necatrix; PCR primer binding site; putative" primer_bind complement(1294..1314) /note="based on small subunit ribosomal RNA of Vairimorpha necatrix; PCR primer binding site; putative" BASE COUNT 324 a 209 c 422 g 359 t ORIGIN BASE COUNT 324 a 209 c 422 g 359 t 4589 others ORIGIN 1 |~~~~~~~~~ ~~~~~CACCA GGU(UGA)UU CU|GCCUGA- C-GU-G-GAU --GCUAUUCU 61 CUGG|-GGCU AA-GCCAUGC A-UGU---UU AU|------- |-------(- ---)[----- 121 ---------- ---------- ---gaagcc- ---------- -uuua-uggg gga]------ 181 -----|---U UG|A-CGGA- CGGCU-CAGU GAUA-GUAC- GAU-GAUU-- ----UGAUUG 241 GGAG<----- ---------- ---------- ---------- ---------- ---------- 301 c>cuggau-G UAACUGUgg( -G-A-AA)CU GCAGg-uaa- guucu----- ----(----) 361 ---------- -------(-- --)--|---- -- -GUACCGAGU -AA|GUUGUA GG|--CCU-A UCA--GCUG- --GUAGUUA- 1141 GG(-GUAAUG G)CCU-AACU A-|GGCGG-A GAC|GGGA-G A-CGGG|GGA -U-(CAGG-) 1201 GUU-UGAUU- CCG|GAGAGG G-AGC(CU-G AGAGAUG)GC UACU-ACGUC (CAAG-)GAU 1261 -GGCAGC-A- ---------| GGC-GC-GA- AACUU-GCCU -AAUCC---( --uuauu-)- 1321 -GGGGA-GGC -|G|GUUAUG AGAA-GU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 -----<---- ---------- ---------- ---------- ---------- ------aaga 1501 ---uguuua- -gca---agu -----auaaa u-------uu guugugauu- ----->UACU 1561 GGAG|GG-CA ACGU-C-GGG U-G(CCA-GC -AGCC|GC-G GU-AA)UACC UG-|CUCCAG 1621 U-AGAGUC|U AUGGU--GAA UGCUG-CAG| UUA--AAAUG UCCGUAGUUG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- --------uu uguaugucuu 2821 -u-ugaguga -ug-uuuaug guuuuuag-u ggauguaguu --uuauugua ----->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GCAg|aGga ---------- 3001 --CGAGGGGC AC|--UGGAU AGUUGGG-CG -AGGG(GU-G AAA---)UAC G-AAGA-C-C 3061 CUGAC-UGG- A-CGAAGA-G AAGC(-GAAG )--GC|U--- GUGUUC-UU| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------ACU ---UUUGUGG -UGA-U|GA- A-GGACGAAG 3301 GCUAGAGGA- UCGAAAUCG( AUUA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -UUUAG|UUC UA--GCA-GU AAACGAUGCC GAC|UG|--- 3421 --gacgggac ---------- ----(----u guuuu----) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- -----agugu -u-gucc--- ---------- ----gaGA(- 3661 GAAA-)UCUU -AAGUAU-GU GGGU|-U|C- UGGGGAUAGU AU--GC-UC( --GCAA-)GA 3721 GUG-AAACUU -GAAG--AGA -UUG|AC-GG -AA-GGACA- -CCAC-AAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --A-GU|-GG 4021 AGUGUGCG|G CU-UAAUUUG (ACUCAA-CG )CGGG--GCA ACUUACCGGU UC[uga-ag- 4081 ugagugu-ga ga-------g ugu(--uuuu ---)-----a cau------- --g-aug--c 4141 uuacgg---- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|CG-GU- GGU-G-CAUG |GCC|GU-UU UAA|AUGGA- U|GGC(-GUG 4261 A-)GCU-UU- -GGA(UU-AA GU)UACGUA- AG-AUGUGAG ACCCU-UU|- ---------- 4321 ------(--- --)[------ ---------- ---------- ---------- -uu------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- ---------- ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- --------]- --|------- ---------- GACU-GUG-C -U-C(----- 5041 ---UAUG-)G GGCA-A-GGG AGGA-AUGGA ACAGAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CCG-UU A|UGCC|CU- 5221 G-AGA-UGAA GCGG--CGGC A-CGCGCACU ACGAU--a-g augccu---- ---------- 5281 ---(-augu- ----)[---- ---------- ---------- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- ---------- ---------- 5401 ---------- ---(-----) ---------- ---------- ------]--- ---------- 5461 -----gggcu a-c-u----- -GUG-A-GGG AUGAAGCUG( UGUAA--U)G GGCUUCUG-A 5521 ACGUGG-AAU U--CCUAGUA AG-AAU-GAU (-UGAACAA- )GUUAU-U-U -UGAAUGUG- 5581 U-CCCUGUCC UU|UGUA-CA CACCGCCCGU CGCUAU-C-U AA-GAU---G AC-GCAG--- 5641 ugg-acgaa- -gauu----- ---------- ---------- ---------- ---------- 5701 -------(ga ga----)--- ---------- ---------- ---------- ---------- 5761 ---------- ------|gg- -ucugagucu u--ucg-u-g uUAG-AUAAG AU-AUAA-G- 5821 UCGUAACAUG GC-------- -----U-G-C UGUUGG(AGA A)CCAUUAGC AGGAUCA--- 5881 --UAA~~~~~ ~~~~~~~~|| ||| // LOCUS Encep.sp.1 5903 bp RNA RNA 11-JAN-191 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: L16867 LOCUS EZORGSSB 1295 bp ds-DNA INV 02-AUG-1993 DEFINITION Encephalitozoon sp. small subunit ribosomal RNA gene. ACCESSION L16867 KEYWORDS small subunit ribosomal RNA. SOURCE Encephalitozoon sp. (individual_isolate HEL17B1d) DNA. ORGANISM Encephalitozoon sp. Eukaryota; Animalia; Protozoa; Microspora; Haplophasea; Glugeida; Encephalitozoonidae. REFERENCE 1 (bases 1 to 1295) AUTHORS Hartskeerl,R.A., Schuitema,A.R., Van Gool,T. and Terpstra,W.J. TITLE Sequence heterogeneity between various microsporidial small subunit ribosomal RNA genes JOURNAL Unpublished (1993) STANDARD full automatic REFERENCE 2 (bases 1 to 1295) AUTHORS Hartskeerl,R.A. TITLE Direct Submission JOURNAL Submission received (May 18 1993) via Authorin E-mail by Genbank STANDARD full automatic FEATURES Location/Qualifiers primer_bind 1..23 /note="based on V.necatrix srRNA sequence; putative" rRNA 1..1295 /product="small subunit ribosomal RNA" primer_bind 1272..1295 /note="based on V.necatrix srRNA sequence; putative" source 1..1295 /organism="Encephalitozoon sp." /isolate="HEL17B1d" /germline /sequenced_mol="DNA" BASE COUNT 318 a 222 c 441 g 314 t ORIGIN BASE COUNT 318 a 222 c 441 g 314 t 4608 others ORIGIN 1 |~~~~~~~~~ ~~~~~CACCA GGU(UGA)UU CU|GCCUGA- C-GU-G-GAU --GCUGUUCU 61 CUGG|-GACU AA-GCCAUGC A-UGU---UG AU|------- |-------(- ---)[----- 121 ---------- ---------- ---gaa-cc- ---------- --uug-uggg gga]------ 181 -----|---U UG|A-CGGA- CGGCU-CAGU GAUA-GUAC- GAU-GAUU-- ----UGGUUG 241 GCGG<----- ---------- ---------- ---------- ---------- ---------- 301 g>agagcu-G UAACUGCGG( -G-A-AA)CU GCAGg-uagg gggc------ ----(----) 361 ---------- -------(-- --)--|---- -- CGAGCCAAGU -AA|GCUGUA GG|--CCU-A UCA--GCUG- --GUAGUUA- 1141 GG(-GUAAUG G)CCU-AACU A-|GGCGG-A GAC|GGGA-G A-CGGG|GGA -U-(CGGG-) 1201 GUU-UGAUU- CCG|GAGAGG G-AGC(CU-G AGAGAUG)GC UACU-ACGUC (CAAG-)GAU 1261 -GGCAGC-A- ---------| GGC-GC-GA- AACUU-GCCU -AAUCC---( --uuug--)- 1321 -GGG-A-GGC -|G|GUUAUG AGAA-GU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 -----<---- ---------- ---------- ---------- ---------- --------ga 1501 ---guuuuuu -ucg---agu -----guaaa g-------ga gucgagau-u ----->GAUU 1561 GGAG|GG-CA A-GU-C-GCG U-G(CCA-GC -AGCC|GC-G GU-AA)UACC UG-|CUCCAA 1621 U-AGUGUC|U AUGGU--GAA UGCUG-CAG| UUA--AAAAG UCCGUAGUCU |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ---uuuguau 2821 -gucuuuguu -ug-ggggau uauguccuga uguggaugua --agagguuu g---->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GCAg|aGga ---------- 3001 --CGAGGGGC AC|--CGGAU AGUUGGG-CG -AGGG(GU-G AAA---)UAC G-AAGA-C-C 3061 CUGAC-UGG- A-CGGACA-G AAGC(-GAAG )--GC|U--- GUGCUC-UU| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------ACU ---UAUGUGA -CGA-U|GA- A-GGACGAAG 3301 GCUAGAGGA- UCGAAAUCG( AUUA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -UUUAG|UUC UA--GCA-GU AAACGAUGCC GAC|UG|--- 3421 --gacgggac u--------- ----(----- auau-----) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- -----agugu -u-gugc--- ---------- ----AUGA(- 3661 GAAA-)UCUU -GAGUAU-GU GGGU|-U|C- UGGGGAUAGU AU--GC-UC( --GCAA-)GA 3721 GUG-AAACUU -GAAG--AGA -UUG|AC-GG -AA-GGACA- -CCAC-AAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --A-GU|-GG 4021 AGUGUGCG|G CU-UAAUUUG (ACUCAA-CG )CGGG--GCA ACUUACCGGU UC[uga-a-g 4081 cgggcag-ga ga-------- -ac(-gagg- ---)-----a cgg------- --g-aug--c 4141 gugcgg---- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|CG-GU- GGU-G-CAUG |GCC|GU-UU GAA|AUGGA- U|GGC(-GUG 4261 A-)GCU-UU- -GGA(UU-AA GU)UGCGUA- AG-AUGUGAG ACCCU-UU|- ---------- 4321 ------(--- --)[------ ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- ---------- ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- --------]- --|------- ---------- GACA-GUG-C -U-C(----- 5041 ---uuug-)G GGCA-A-GGG AGGA-AUGGA ACAGAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CCG-UU A|UGCC|CU- 5221 G-AGA-UGAA GCGG-GCGGC A-CGCGCACU ACGAU--A-g auggcg---- ---------- 5281 ---(-aggg- ----)[---- ---------- ---------- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- ---------- ---------- 5401 ---------- ---(-----) ---------- ---------- ------]--- ---------- 5461 -----agccu g-c-u----- -gug-a-GGG AUGAAGCUG( UGUAA--U)G GGCUUCUG-A 5521 ACGUGG-AAU U--CCUAGUA AU-AAC-GAU (-UGAACAA- )GUUGU-U-U -UGAAUGGG- 5581 U-CCCUGUCC UU|UGUA-CA CACCGCCCGU CGCUAU-C-C AA-GAU---G AC-GCAG--- 5641 ugg-acgaa- -gauu----- ---------- ---------- ---------- ---------- 5701 -------(gg aa----)--- ---------- ---------- ---------- ---------- 5761 ---------- ------|gg- -ucugagucc u--ucg-u-g uUAG-AUAAG AU-AUAA-G- 5821 UCGUAACAUG GC-------- -----U-G-C UGUUGG(AGA A)CCAUUAGC AGGAUCA--- 5881 --UAA~~~~~ ~~~~~~~~|| ||| // LOCUS Encep.sp.2 5903 bp RNA RNA 11-JAN-191 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: L16866 LOCUS EZORGSSA 1295 bp ds-DNA INV 02-AUG-1993 DEFINITION Encephalitozoon sp. small subunit ribosomal RNA gene. ACCESSION L16866 KEYWORDS small subunit ribosomal RNA. SOURCE Encephalitozoon sp. (individual_isolate HEL14M5) DNA. ORGANISM Encephalitozoon sp. Eukaryota; Animalia; Protozoa; Microspora; Haplophasea; Glugeida; Encephalitozoonidae. REFERENCE 1 (bases 1 to 1295) AUTHORS Hartskeerl,R.A., Schuitema,A.R., Van Gool,T. and Terpstra,W.J. TITLE Sequence heterogeneity between various microsporidial small subunit ribosomal RNA genes JOURNAL Unpublished (1993) STANDARD full automatic REFERENCE 2 (bases 1 to 1295) AUTHORS Hartskeerl,R.A. TITLE Direct Submission JOURNAL Submission received (May 18 1993) via Authorin E-mail by Genbank STANDARD full automatic FEATURES Location/Qualifiers primer_bind 1..23 /note="based on V.necatrix srRNA sequence; putative" rRNA 1..1295 /product="small subunit ribosomal RNA" /note="putative" primer_bind 1272..1295 /note="based on V.necatrix srRNA sequence; putative" source 1..1295 /organism="Encephalitozoon sp." /isolate="HEL14M5" /sequenced_mol="DNA" BASE COUNT 318 a 221 c 441 g 315 t ORIGIN BASE COUNT 318 a 221 c 441 g 315 t 4608 others ORIGIN 1 |~~~~~~~~~ ~~~~~CACCA GGU(UGA)UU CU|GCCUGA- C-GU-G-GAU --GCUAUUCC 61 CUGG|-GACU AA-GCCAUGC A-UGU---UG AU|------- |-------(- ---)[----- 121 ---------- ---------- ---gaa-cc- ---------- --uug-uggg gga]------ 181 -----|---U UG|A-CGGA- CGGCU-CAGU GAUA-GUAC- GAU-GAUU-- ----UGGUUG 241 GCGG<----- ---------- ---------- ---------- ---------- ---------- 301 g>agagcu-G UAACUGCGG( -G-A-AA)CU GCAGg-uagg gggc------ ----(----) 361 ---------- -------(-- --)--|---- -- CGAGCCAAGU -AA|GUUGUA GG|--CCU-A UCA--GCUG- --GUAGUUA- 1141 GG(-GUAAUG G)CCU-AACU A-|GGCGG-A GAC|GGGA-G A-CGGG|GGA -U-(CGGG-) 1201 GUU-UGAUU- CCG|GAGAGG G-AGC(CU-G AGAGAUG)GC UACU-ACGUC (CAAG-)GAU 1261 -GGCAGC-A- ---------| GGC-GC-GA- AACUU-GCCU -AAUCC---( --uuug--)- 1321 -GGG-A-GGC -|G|GUUAUG AGAA-GU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 -----<---- ---------- ---------- ---------- ---------- --------ga 1501 ---guuuuuu -ucg---agu -----guaaa g-------ga gucgagauu- ----->GAUU 1561 GGAG|GG-CA A-GU-C-GGG U-G(CCA-GC -AGCC|GC-G GU-AA)UACC UG-|CUCCAA 1621 U-AGUGUC|U AUGGU--GAA UGCUG-CAG| UUA--AAAAG UCCGUAGUCU |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ---uuuguau 2821 -gucuuuguu -ug-ggggau uauguccuga uguggaugua --agagguuu g---->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GCAg|aGga ---------- 3001 --CGAGGGGC AC|--CGGAU AGUUGGG-CG -AGGG(GU-G AAA---)UAC G-AAGA-C-C 3061 CUGAC-UGG- A-CGGACA-G AAGC(-GAAG )--GC|U--- GUGCUC-UU| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------ACU ---UAUGUGA -CGA-U|GA- A-GGACGAAG 3301 GCUAGAGGA- UCGAAAUCG( AUUA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -UUUAG|UUC UA--GCA-GU AAACGAUGCC GAC|UG|--- 3421 --gacgggac u--------- ----(----- auau-----) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- -----agugu -u-gugc--- ---------- ----AUGA(- 3661 GAAA-)UCUU -GAGUAU-GU GGGU|-U|C- UGGGGAUAGU AU--GC-UC( --GCAA-)GA 3721 GUG-AAACUU -GAAG--AGA -UUG|AC-GG -AA-GGACA- -CCAC-AAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --A-GU|-GG 4021 AGUGUGCG|G CU-UAAUUUG (ACUCUA-CG )CGGG--GCA ACUUACCGGU UC[uga-a-g 4081 cgggcag-ga ga-------- -ac(-gagg- ---)-----a cgg------- --g-aug--c 4141 gcgcgg---- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|CG-GU- GGU-G-CAUG |GCC|GU-UU GAA|AUGGA- U|GGC(-GUG 4261 A-)GCU-UU- -GGA(UU-AA GU)UGCGUA- AG-AUGUGAG ACCCU-UU|- ---------- 4321 ------(--- --)[------ ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- ---------- ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- --------]- --|------- ---------- GACA-GUG-C -U-C(----- 5041 ---uuug-)G GGCA-A-GGG AGGA-AUGGA ACAGAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CCG-UU A|UGCC|CU- 5221 G-AGA-UGAA GCGG-GCGGC A-CGCGCACU ACGAU--A-g auggcg---- ---------- 5281 ---(-aggg- ----)[---- ---------- ---------- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- ---------- ---------- 5401 ---------- ---(-----) ---------- ---------- ------]--- ---------- 5461 -----agccu g-c-u----- -gug-a-GGG AUGAAGCUG( UGUAA--U)G GGCUUCUG-A 5521 ACGUGG-AAU U--CCUAGUA AU-AAC-GAU (-UGAACAA- )GUUGU-U-U -UGAAUGGG- 5581 U-CCCUGUCC UU|UGUA-CA CACCGCCCGU CGCUAU-C-U AA-GAU---G AC-GCAG--- 5641 ugg-acgaa- -gauu----- ---------- ---------- ---------- ---------- 5701 -------(gg aa----)--- ---------- ---------- ---------- ---------- 5761 ---------- ------|gg- -ucugagucc u--ucg-u-g uUAG-AUAAG AU-AUAA-G- 5821 UCGUAACAUG GC-------- -----U-G-C UGUUGG(AGA A)CCAUUAGC AGGAUCA--- 5881 --UAA~~~~~ ~~~~~~~~|| ||| // LOCUS V.lymantri 5903 bp RNA RNA 11-JAN-1997 DEFINITION Vairimorpha lymantriae. ACCESSION No information KEYWORDS No information. SOURCE Vairimorpha lymantriae. ORGANISM Vairimorpha lymantriae. REFERENCE 1 (bases 1 to 1247) AUTHORS Charlie Vossbrinck TITLE From: "Charles R. Vossbrinck" JOURNAL No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: AF033315 LOCUS AF033315 1393 bp DNA INV 02-JAN-1999 DEFINITION Vairimorpha lymantriae small subunit ribosomal RNA gene sequence. ACCESSION AF033315 NID g4104169 KEYWORDS . SOURCE Vairimorpha lymantriae. ORGANISM Vairimorpha lymantriae Eukaryota; Microsporidia; Burenellidae; Vairimorpha. REFERENCE 1 (bases 1 to 1393) AUTHORS Vossbrinck,C.R. TITLE rDNA sequence of Vairimorpha lymantriae JOURNAL Unpublished REFERENCE 2 (bases 1 to 1393) AUTHORS Vossbrinck,C.R. TITLE Direct Submission JOURNAL Submitted (06-NOV-1997) Soil and Water, Connecticut Agricultural Experimental Station, 123 Huntington Street, New Haven, CT 06504, USA FEATURES Location/Qualifiers source 1..1393 /organism="Vairimorpha lymantriae" /db_xref="taxon:27968" rRNA 1..1393 /product="small subunit ribosomal RNA" BASE COUNT 464 a 192 c 308 g 429 t BASE COUNT 405 a 173 c 285 g 382 t 4658 others ORIGIN 1 |~~~~~~~~~ ~~~~~CACCA GGU(UGA)UU CU|GCCUGA- C-GU-A-GAC --GCUAUUCC 61 CUAA|-GAUU AA-CCCAUGC A-UGU---UU UU|------- |-------(- ---)[----- 121 ---------- ---------- ---ga----- ---------c auuu------ -ga]------ 181 -----|---A AA|A-UGGA- CUGCU-CAGU AAUA-CUCA- CUU-AAUU-- ----UUAUGU 241 A-ca------ ---------- ---------- ---------- ---------- ---------- 301 u-uugaaa-c uaacuaCGU( -U-A-AA)GU GUAG-auaa- gau------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- ---------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 ---------- ---------- ---------- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- ---------- ---------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 ---------- ---------- ---------- ---------- ---------- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------> -GUGUACAGU -AA|GAGUGA GA|--CCU-A UCA--GCUA- --GUUGUUA- 1141 AG(-GUAAUG G)CUU-AACA A-|GGCAG-U GAC|GGGU-A A-CGGU|AUU -A-(CUUUG) 1201 UAA-U-AUU- CCG|GAGAAG G-AGC(CU-G AGAGACG)GC UACU-AAGUC (UAAG-)GAU 1261 -UGCAGC-A- ---------| GGG-GC-GA- AACUU-GACC -UAUGGA-U( ---uuu--)A 1321 UCUG-A-GGC -|A|GUUAUG GGAA-GU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 -----<---- ---------a aua(-----u uauau)uguu ---------- ---------- 1501 ---------u -cau---auu -----uuaaa --------aa uauaugaggu gauu->AAUU 1561 GGAG|GG-CA A-AU-C-AAG U-G(CCA-GC -AGCC|GC-G GU-AA)UACU UG-|UUCCAA 1621 G-AGUGUG|U AUGAU--GAU UGAUG-CAG| UUA--AAAAG UCCGUAGUUU |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---auauuua ag--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -AAGC|AAUA ---------- 3001 --UGAGGUGU AC|--UGUAU AGUUGGG-AG -AAAG(AU-G AAA---)UGU A-ACGA-C-C 3061 CUGAC-UGG- A-CGAACA-G AAGC(-GAAA )--GC|U--- GUACAC-UU| GU-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUG ---UAUUUUU -UGA-A|CA- A-GGACGUAA 3301 GCUGGAGGA- GCGAAGAUG( AUUA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CA-U -UGUAG|UUC CA--GCA-GU AAACUAUGCC GAC|GA|--- 3421 --uguga-ua uga------- ----(----u auauu----) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- --uu-gua-u -u-acau--- ---------- ----aaUA(- 3661 GAAA-)UUA- -GAGUUU-UU UGGC|-U|C- UGGGGAUAGU AU--GA-UC( --GCAA-)GA 3721 UUG-AAAAUU -AAAG--AAA -UUG|AC-GG -AA-GAAUA- -CCAC-AAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --A-GU|-GG 4021 AUUGUGCG|G CU-UAAUUUG (ACUCAA-CG )CGAG--GUA ACUUACCAAU AU[u------ 4081 uuau-u---- ---------- --a-uuuu-- -gagacgauu cuuaauca-- -ga-gaa--u 4141 gau-aa---- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UA-GU- GGU-G-CAUG |GCC|GU-UU UCA|AUGGA- U|GCU(-GUG 4261 A-)AGU-UU- -UGA(UU-AA UU)UCAACA- AG-ACGUGAG ACCCU-UU|- ---------- 4321 ------(--- --)[ua---- ---------- ---------- ---------u u-a------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- ---------- ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ------ua]- --|------- ---------- GACA-GAC-A -C--(----- 5041 --aauca-)- GUGU-A-GGA AGGA-AAGGA UUAAAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CCG-UU A|UGCC|CU- 5221 C-AGA-CAUU UUGG-GCUGC A-CGCGCAAU ACAAU--A-g au-------- ---------- 5281 ---(-auaua ----)[---- ---------- ---------- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- ---------- ---------- 5401 ---------- ---(-----) ---------- ---------- ------]--- ---------- 5461 ---------a u-c-U----- -UUA-U-GGG AUAAUAUUU( UGUAA--G)A GAUAUUUG-A 5521 ACUUGG-AAU U--GCUAGUA AA-UUU-UAU (-UAAAUAA- )GUAGA-A-U -UGAAUGUG- 5581 U-CCCUGUUC UU|UGUA-CA CACCGCCCGU CGCUAU-C-U AA-GAU---G AU-AUAU--- 5641 guu-gugaa- -auuagu--- ---------- ---------- ---------- ---------- 5701 -------(ga aa----)--- ---------- ---------- ---------- ---------- 5761 ---------- ---ac-|ua- -CUUGAACAA U--AUG-U-A UUAG-AUCUG AU-AUAA-G- 5821 UCGUAACAUG GU-------- -----U-G-C UGUUGG(AGA A)CCAUUAGC AGGAUCA--- 5881 --uaa----- -------~|| ||| // LOCUS V.necatr.1 5903 bp RNA RNA 28-FEB-1992 DEFINITION Vairimorpha necatrix. Vairimorpha necatrix. Vairimorpha necatrix. Vairimorpha necatrix. Vairimorpha necatrix. Vairimorpha necatrix. Vairimorpha necatrix. Vairimorpha necatrix. Vairimorpha necatrix. Vairimorpha necatrix. Vairimorpha necatrix. Vairimorpha necatrix. Vairimorpha necatrix. Vairimorpha necatrix. Vairimorpha necatrix. Vairimorpha necatrix. Vairimorpha necatrix.; ribosomal RNA. ACCESSION Y00266 M24612 KEYWORDS ribosomal RNA. SOURCE Vairimorpha necatrix. Vairimorpha necatrix. Vairimorpha necatrix. Vairimorpha necatrix. Vairimorpha necatrix. Vairimorpha necatrix. Vairimorpha necatrix. Vairimorpha necatrix. Vairimorpha necatrix. Vairimorpha necatrix. Vairimorpha necatrix. Vairimorpha necatrix. Vairimorpha necatrix. Vairimorpha necatrix. Vairimorpha necatrix. Vairimorpha necatrix. Vairimorpha necatrix. ORGANISM Vairimorpha necatrix. Vairimorpha necatrix. Vairimorpha necatrix. Vairimorpha necatrix. Vairimorpha necatrix. Vairimorpha necatrix. Vairimorpha necatrix. Vairimorpha necatrix. Vairimorpha necatrix. Vairimorpha necatrix. Vairimorpha necatrix. Vairimorpha necatrix. Vairimorpha necatrix. Vairimorpha necatrix. Vairimorpha necatrix. Vairimorpha necatrix. Vairimorpha necatrix. REFERENCE 1 (bases 1 to 1244) AUTHORS Vossbrinck,C.R. Vossbrinck,C.R. Vossbrinck,C.R. Vossbrinck,C.R. Vossbrinck,C.R. Vossbrinck,C.R. Vossbrinck,C.R. Vossbrinck,C.R. Vossbrinck,C.R. Vossbrinck,C.R. Vossbrinck,C.R. Vossbrinck,C.R. Vossbrinck,C.R. Vossbrinck,C.R. Vossbrinck,C.R. Vossbrinck,C.R. Vossbrinck,C.R. TITLE Direct Submission Direct Submission Direct Submission Direct Submission Direct Submission Direct Submission Direct Submission Direct Submission Direct Submission Direct Submission Direct Submission Direct Submission Direct Submission Direct Submission Direct Submission Direct Submission Direct Submission JOURNAL Submitted (26-MAR-1987) Charles R. Vossbrinck, Office of Ag. Ent+Natural History Survey, 607 E. Peabody, Champaign I1. 61820 . Submitted (26-MAR-1987) Charles R. Vossbrinck, Office of Ag. Ent+Natural History Survey, 607 E. Peabody, Champaign I1. 61820 . Submitted (26-MAR-1987) Charles R. Vossbrinck, Office of Ag. Ent+Natural History Survey, 607 E. Peabody, Champaign I1. 61820 . Submitted (26-MAR-1987) Charles R. Vossbrinck, Office of Ag. Ent+Natural History Survey, 607 E. Peabody, Champaign I1. 61820 . Submitted (26-MAR-1987) Charles R. Vossbrinck, Office of Ag. Ent+Natural History Survey, 607 E. Peabody, Champaign I1. 61820 . Submitted (26-MAR-1987) Charles R. Vossbrinck, Office of Ag. Ent+Natural History Survey, 607 E. Peabody, Champaign I1. 61820 . Submitted (26-MAR-1987) Charles R. Vossbrinck, Office of Ag. Ent+Natural History Survey, 607 E. Peabody, Champaign I1. 61820 . Submitted (26-MAR-1987) Charles R. Vossbrinck, Office of Ag. Ent+Natural History Survey, 607 E. Peabody, Champaign I1. 61820 . Submitted (26-MAR-1987) Charles R. Vossbrinck, Office of Ag. Ent+Natural History Survey, 607 E. Peabody, Champaign I1. 61820 . Submitted (26-MAR-1987) Charles R. Vossbrinck, Office of Ag. Ent+Natural History Survey, 607 E. Peabody, Champaign I1. 61820 . Submitted (26-MAR-1987) Charles R. Vossbrinck, Office of Ag. Ent+Natural History Survey, 607 E. Peabody, Champaign I1. 61820 . Submitted (26-MAR-1987) Charles R. Vossbrinck, Office of Ag. Ent+Natural History Survey, 607 E. Peabody, Champaign I1. 61820 . Submitted (26-MAR-1987) Charles R. Vossbrinck, Office of Ag. Ent+Natural History Survey, 607 E. Peabody, Champaign I1. 61820 . Submitted (26-MAR-1987) Charles R. Vossbrinck, Office of Ag. Ent+Natural History Survey, 607 E. Peabody, Champaign I1. 61820 Submitted (26-MAR-1987) Charles R. Vossbrinck, Office of Ag. Ent+Natural History Survey, 607 E. Peabody, Champaign I1. 61820 . . Submitted (26-MAR-1987) Charles R. Vossbrinck, Office of Ag. Ent+Natural History Survey, 607 E. Peabody, Champaign I1. 61820 . Submitted (26-MAR-1987) Charles R. Vossbrinck, Office of Ag. Ent+Natural History Survey, 607 E. Peabody, Champaign I1. 61820 . STANDARD No information REFERENCE 2 (bases 1 to 1244) AUTHORS Vossbrink,C.R., Maddox,J.V., Friedman,S., DeBrunner-Vossbrinck,B.A. and Woese,C.R. TITLE Ribosomal RNA sequence suggests microsporidia are extremely ancient eukaryotes JOURNAL Nature 326, 411-414 (1987) STANDARD full automatic REFERENCE 1 (bases 1 to 1244) AUTHORS No information JOURNAL No information STANDARD No information REFERENCE 2 (bases 1 to 1244) AUTHORS Vossbrink,C.R., Maddox,J.V., Friedman,S., DeBrunner-Vossbrinck,B.A. and Woese,C.R. TITLE Ribosomal RNA sequence suggests microsporidia are extremely ancient eukaryotes JOURNAL Nature 326, 411-414 (1987) STANDARD full automatic REFERENCE 1 (bases 1 to 1244) AUTHORS No information JOURNAL No information STANDARD No information REFERENCE 2 (bases 1 to 1244) AUTHORS Vossbrink,C.R., Maddox,J.V., Friedman,S., DeBrunner-Vossbrinck,B.A. and Woese,C.R. TITLE Ribosomal RNA sequence suggests microsporidia are extremely ancient eukaryotes JOURNAL Nature 326, 411-414 (1987) STANDARD full automatic REFERENCE 1 (bases 1 to 1244) AUTHORS No information JOURNAL No information STANDARD No information REFERENCE 2 (bases 1 to 1244) AUTHORS Vossbrink,C.R., Maddox,J.V., Friedman,S., DeBrunner-Vossbrinck,B.A. and Woese,C.R. TITLE Ribosomal RNA sequence suggests microsporidia are extremely ancient eukaryotes JOURNAL Nature 326, 411-414 (1987) STANDARD full automatic REFERENCE 1 (bases 1 to 1244) AUTHORS No information JOURNAL No information STANDARD No information REFERENCE 2 (bases 1 to 1244) AUTHORS Vossbrink,C.R., Maddox,J.V., Friedman,S., DeBrunner-Vossbrinck,B.A. and Woese,C.R. TITLE Ribosomal RNA sequence suggests microsporidia are extremely ancient eukaryotes JOURNAL Nature 326, 411-414 (1987) STANDARD full automatic REFERENCE 1 (bases 1 to 1244) AUTHORS No information JOURNAL No information STANDARD No information REFERENCE 2 (bases 1 to 1244) AUTHORS Vossbrink,C.R., Maddox,J.V., Friedman,S., DeBrunner-Vossbrinck,B.A. and Woese,C.R. TITLE Ribosomal RNA sequence suggests microsporidia are extremely ancient eukaryotes JOURNAL Nature 326, 411-414 (1987) STANDARD full automatic REFERENCE 1 (bases 1 to 1244) AUTHORS No information JOURNAL No information STANDARD No information REFERENCE 2 (bases 1 to 1244) AUTHORS Vossbrink,C.R., Maddox,J.V., Friedman,S., DeBrunner-Vossbrinck,B.A. and Woese,C.R. TITLE Ribosomal RNA sequence suggests microsporidia are extremely ancient eukaryotes JOURNAL Nature 326, 411-414 (1987) STANDARD full automatic REFERENCE 1 (bases 1 to 1244) AUTHORS No information JOURNAL No information STANDARD No information REFERENCE 2 (bases 1 to 1244) AUTHORS Vossbrink,C.R., Maddox,J.V., Friedman,S., DeBrunner-Vossbrinck,B.A. and Woese,C.R. TITLE Ribosomal RNA sequence suggests microsporidia are extremely ancient eukaryotes JOURNAL Nature 326, 411-414 (1987) STANDARD full automatic REFERENCE 1 (bases 1 to 1244) AUTHORS No information JOURNAL No information STANDARD No information REFERENCE 2 (bases 1 to 1244) AUTHORS Vossbrink,C.R., Maddox,J.V., Friedman,S., DeBrunner-Vossbrinck,B.A. and Woese,C.R. TITLE Ribosomal RNA sequence suggests microsporidia are extremely ancient eukaryotes JOURNAL Nature 326, 411-414 (1987) STANDARD full automatic REFERENCE 1 (bases 1 to 1244) AUTHORS No information JOURNAL No information STANDARD No information REFERENCE 2 (bases 1 to 1244) AUTHORS Vossbrink,C.R., Maddox,J.V., Friedman,S., DeBrunner-Vossbrinck,B.A. and Woese,C.R. TITLE Ribosomal RNA sequence suggests microsporidia are extremely ancient eukaryotes JOURNAL Nature 326, 411-414 (1987) STANDARD full automatic REFERENCE 1 (bases 1 to 1244) AUTHORS No information JOURNAL No information STANDARD No information REFERENCE 2 (bases 1 to 1244) AUTHORS Vossbrink,C.R., Maddox,J.V., Friedman,S., DeBrunner-Vossbrinck,B.A. and Woese,C.R. TITLE Ribosomal RNA sequence suggests microsporidia are extremely ancient eukaryotes JOURNAL Nature 326, 411-414 (1987) STANDARD full automatic REFERENCE 1 (bases 1 to 1244) AUTHORS No information JOURNAL No information STANDARD No information REFERENCE 2 (bases 1 to 1244) AUTHORS Vossbrink,C.R., Maddox,J.V., Friedman,S., DeBrunner-Vossbrinck,B.A. and Woese,C.R. TITLE Ribosomal RNA sequence suggests microsporidia are extremely ancient eukaryotes JOURNAL Nature 326, 411-414 (1987) STANDARD full automatic REFERENCE 1 (bases 1 to 1244) AUTHORS No information JOURNAL No information STANDARD No information REFERENCE 2 (bases 1 to 1244) AUTHORS Vossbrink,C.R., Maddox,J.V., Friedman,S., DeBrunner-Vossbrinck,B.A. and Woese,C.R. TITLE Ribosomal RNA sequence suggests microsporidia are extremely ancient eukaryotes JOURNAL Nature 326, 411-414 (1987) STANDARD full automatic REFERENCE 1 (bases 1 to 1244) AUTHORS No information JOURNAL No information STANDARD No information REFERENCE 2 (bases 1 to 1244) AUTHORS Vossbrink,C.R., Maddox,J.V., Friedman,S., DeBrunner-Vossbrinck,B.A. and Woese,C.R. TITLE Ribosomal RNA sequence suggests microsporidia are extremely ancient eukaryotes JOURNAL Nature 326, 411-414 (1987) STANDARD full automatic REFERENCE 1 (bases 1 to 1244) AUTHORS No information JOURNAL No information STANDARD No information REFERENCE 2 (bases 1 to 1244) AUTHORS Vossbrink,C.R., Maddox,J.V., Friedman,S., DeBrunner-Vossbrinck,B.A. and Woese,C.R. TITLE Ribosomal RNA sequence suggests microsporidia are extremely ancient eukaryotes JOURNAL Nature 326, 411-414 (1987) STANDARD full automatic REFERENCE 1 (bases 1 to 1244) AUTHORS No information JOURNAL No information STANDARD No information REFERENCE 2 (bases 1 to 1244) AUTHORS Vossbrink,C.R., Maddox,J.V., Friedman,S., DeBrunner-Vossbrinck,B.A. and Woese,C.R. TITLE Ribosomal RNA sequence suggests microsporidia are extremely ancient eukaryotes JOURNAL Nature 326, 411-414 (1987) STANDARD full automatic REFERENCE 1 (bases 1 to 1244) AUTHORS No information JOURNAL No information STANDARD No information REFERENCE 2 (bases 1 to 1244) AUTHORS Vossbrink,C.R., Maddox,J.V., Friedman,S., DeBrunner-Vossbrinck,B.A. and Woese,C.R. TITLE Ribosomal RNA sequence suggests microsporidia are extremely ancient eukaryotes JOURNAL Nature 326, 411-414 (1987) STANDARD full automatic COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: Y00266 Y00266 Y00266 Y00266 Y00266 Y00266 Y00266 Y00266 Y00266 Y00266 Y00266 Y00266 Y00266 Y00266 Y00266 Y00266 Y00266 NCBI gi: 10868 NCBI gi: 10868 NCBI gi: 10868 NCBI gi: 10868 NCBI gi: 10868 NCBI gi: 10868 NCBI gi: 10868 NCBI gi: 10868 NCBI gi: 10868 NCBI gi: 10868 NCBI gi: 10868 NCBI gi: 10868 NCBI gi: 10868 NCBI gi: 10868 NCBI gi: 10868 NCBI gi: 10868 NCBI gi: 10868 BASE COUNT 401 a 172 c 293 g 378 t 4659 others ORIGIN 1 |~~~~~~~~~ ~~~~~CACCA GGU(UGA)UU CU|GCCUGA- C-GU-A-GAC --GCUAUUCC 61 CUAA|-GAUU AA-CCCAUGC A-UGU---UU UU|------- |-------(- ---)[----- 121 ---------- ---------- ---ga----- ---------- --uau----- gga]------ 181 -----|---A AA|A-UGGA- CUGCU-CAGU AAUA-CUCA- CUU-UAUU-- ----UAAUGU 241 AUUA<----- ---------- ---------- ---------- ---------- ---------- 301 a>AUUAGU-A UAACUGCGU( -U-A-AA)GU GUAGCAUAA- GAC------- ----(----) 361 ---------- -------(-- --)--|---- --<------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ------|--- ---------- ---------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 ---------- ---------- ---------- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- ---------- ---------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 ---------- ---------- ---------- ---------- ---------- ---------- 1021 -|-------- ---------- ---------- ---------- ---------- ---------- 1081 ---------> -AUAUACAGU -AA|GAGUGA GA|--CCU-A UCA--GCUA- --GUUGUUA- 1141 AG(-GUAAUG G)CUU-AACA A-|GGCAA-U GAC|GGGU-A A-CGGU|AUU -A-(CUUUG) 1201 UAA-U-AUU- CCG|GAGAAG G-AGC(CU-G AGAGACG)GC UACU-AAGUC (UAAG-)GAU 1261 -UGCAGC-A- ---------| GGG-GC-GA- AACUU-GACC -UAUGGA-U( ---uuu--)A 1321 UCUG-A-GGC -|A|GUUAUG GGAA-GU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 -----<---- ---------a aua(-----u ucuau)uguu ---------- ---------- 1501 ---------u -cau---auu -----guaaa --------ag uauaugaggu gauu->AAUU 1561 GGAG|GG-CA A-AU-C-AAG U-G(CCA-GC -AGCC|GC-G GU-AA)UACU UG-|UUCCAA 1621 G-AGUGUG|U AUGAU--GAU UGAUG-CAG| UUA--AAAAG UCCGUAGUUU |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---auauuua ag--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -AAGC|AAUA ---------- 3001 --UGAGGUGU AC|--UGUAU AGUUGGG-AG -AGAG(AU-G AAA---)UGU G-ACGA-C-C 3061 CUGAC-UGG- A-CGAACA-G AAGC(-GAAA )--GC|U--- GUACAC-UU| GU-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUG ---UAUUUUU -UGA-A|CA- A-GGACGUAA 3301 GCUGGAGGA- GCGAAGAUG( AUUA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CA-U -UGUAG|UUC CA--GCA-GU AAACUAUGCC GAC|GA|--- 3421 --uguga-ua uga-u----- ----(----- auua-----) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- a-uu-gua-u -u-agau--- ---------- ----gaUA(- 3661 GAAA-)UUU- -GAGUUU-UU UGGC|-U|C- UGGGGAUAGU AU--GA-UC( --GCAA-)GA 3721 UUG-AAAAUU -AAAG--AAA -UUG|AC-GG -AA-GAAUA- -CCAG-AAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --A-GU|-GG 4021 AUUGUGCG|G CU-UAAUUUG (ACUCAA-CG )CGAG--GUA ACUUACCAAU AU[u------ 4081 uuau-ucaga ga-------- aga(uuuuc- -ga)------ ucu------- -ga-gaa--u 4141 gau-aa---- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UA-GU- GGU-G-CAUG |GCC|GU-UU UCA|AUGGA- U|GCU(-GUG 4261 A-)AGU-UU- -UGA(UU-AA UU)UCACCA- AG-ACGUGAG ACCCU-UU|- ---------- 4321 ------(--- --)[ua---- ---------- ---------- ---------u uaa------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- ---------- ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ------ua]- --|------- ---------- GACA-GAC-A -C--(----- 5041 --aauca-)- GUGU-A-GGA AGGA-AAGGA UUAAAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CCG-UU A|UGCC|CU- 5221 C-AGA-CAUU UUGG-GCUGC A-CGCGCAAU ACAAU--A-g au-------- ---------- 5281 ---(-auaua ----)[---- ---------- ---------- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- ---------- ---------- 5401 ---------- ---(-----) ---------- ---------- ------]--- ---------- 5461 ---------a u-c-U----- -UUA-U-GGG AUAAUAUUU( UGUAA--G)A GAUAUUUG-A 5521 ACUUGG-AAU U--GCUAGUA AA-UUU-UAU (-UAAAUAA- )GUAGA-A-U -UGAAUGUG- 5581 U-CCCUGUUC UU|UGUA-CA CACCGCCCGU CGCUAU-C-U AA-GAU---G AU-AUGU--- 5641 guu-gugaa- -auuagu--- ---------- ---------- ---------- ---------- 5701 -------(ga aa----)--- ---------- ---------- ---------- ---------- 5761 ---------- ---ac-|ua- -CUUGAACAA U--AUG-U-A UUAG-AUCUG AU-AUAA-G- 5821 UCGUAACAUG GU-------- -----U-G-C UGUUGG(AGA A)CCAUUAGC AGGAUCA--- 5881 --uaa----- -------~|| ||| // LOCUS V.necatr.2 5903 bp RNA RNA 15-SEP-1989 DEFINITION Vairimorpha necatrix.; 16S ribosomal RNA. ACCESSION M24612 KEYWORDS 16S ribosomal RNA. SOURCE Vairimorpha necatrix. ORGANISM Vairimorpha necatrix. REFERENCE 1 (bases 1 to 1244) AUTHORS Vossbrinck,C.R., Maddox,J.V., Friedman,S., DeBrunner-Vossbrinck ,B.A. and Woese,C.R. TITLE Ribosomal RNA sequence suggests microsporidia are extremely ancient eukaryotes JOURNAL Nature 326, 411-414 (1987) STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: M24612 NCBI gi: 162548 BASE COUNT 401 a 172 c 293 g 378 t 4659 others ORIGIN 1 |~~~~~~~~~ ~~~~~CACCA GGU(UGA)UU CU|GCCUGA- C-GU-A-GAC --GCUAUUCC 61 CUAA|-GAUU AA-CCCAUGC A-UGU---UU UU|------- |-------(- ---)[----- 121 ---------- ---------- ---ga----- ---------- --uau----- gga]------ 181 -----|---A AA|A-UGGA- CUGCU-CAGU AAUA-CUCA- CUU-UAUU-- ----UAAUGU 241 AUUA<----- ---------- ---------- ---------- ---------- ---------- 301 a>AUUAGU-A UAACUGCGU( -U-A-AA)GU GUAGCAUAA- GAC------- ----(----) 361 ---------- -------(-- --)--|---- --<------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ------|--- ---------- ---------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 ---------- ---------- ---------- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- ---------- ---------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 ---------- ---------- ---------- ---------- ---------- ---------- 1021 -|-------- ---------- ---------- ---------- ---------- ---------- 1081 ---------> -AUAUACAGU -AA|GAGUGA GA|--CCU-A UCA--GCUA- --GUUGUUA- 1141 AG(-GUAAUG G)CUU-AACA A-|GGCAA-U GAC|GGGU-A A-CGGU|AUU -A-(CUUUG) 1201 UAA-U-AUU- CCG|GAGAAG G-AGC(CU-G AGAGACG)GC UACU-AAGUC (UAAG-)GAU 1261 -UGCAGC-A- ---------| GGG-GC-GA- AACUU-GACC -UAUGGA-U( ---uuu--)A 1321 UCUG-A-GGC -|A|GUUAUG GGAA-GU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 -----<---- ---------a aua(-----u ucuau)uguu ---------- ---------- 1501 ---------u -cau---auu -----guaaa --------ag uauaugaggu gauu->AAUU 1561 GGAG|GG-CA A-AU-C-AAG U-G(CCA-GC -AGCC|GC-G GU-AA)UACU UG-|UUCCAA 1621 G-AGUGUG|U AUGAU--GAU UGAUG-CAG| UUA--AAAAG UCCGUAGUUU |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---auauuua ag--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -AAGC|AAUA ---------- 3001 --UGAGGUGU AC|--UGUAU AGUUGGG-AG -AGAG(AU-G AAA---)UGU G-ACGA-C-C 3061 CUGAC-UGG- A-CGAACA-G AAGC(-GAAA )--GC|U--- GUACAC-UU| GU-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUG ---UAUUUUU -UGA-A|CA- A-GGACGUAA 3301 GCUGGAGGA- GCGAAGAUG( AUUA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CA-U -UGUAG|UUC CA--GCA-GU AAACUAUGCC GAC|GA|--- 3421 --uguga-ua uga-u----- ----(----- auua-----) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- a-uu-gua-u -u-agau--- ---------- ----gaUA(- 3661 GAAA-)UUU- -GAGUUU-UU UGGC|-U|C- UGGGGAUAGU AU--GA-UC( --GCAA-)GA 3721 UUG-AAAAUU -AAAG--AAA -UUG|AC-GG -AA-GAAUA- -CCAG-AAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --A-GU|-GG 4021 AUUGUGCG|G CU-UAAUUUG (ACUCAA-CG )CGAG--GUA ACUUACCAAU AU[u------ 4081 uuau-ucaga ga-------- aga(uuuuc- -ga)------ ucu------- -ga-gaa--u 4141 gau-aa---- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UA-GU- GGU-G-CAUG |GCC|GU-UU UCA|AUGGA- U|GCU(-GUG 4261 A-)AGU-UU- -UGA(UU-AA UU)UCACCA- AG-ACGUGAG ACCCU-UU|- ---------- 4321 ------(--- --)[ua---- ---------- ---------- ---------u uaa------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- ---------- ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ------ua]- --|------- ---------- GACA-GAC-A -C--(----- 5041 --aauca-)- GUGU-A-GGA AGGA-AAGGA UUAAAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CCG-UU A|UGCC|CU- 5221 C-AGA-CAUU UUGG-GCUGC A-CGCGCAAU ACAAU--A-g au-------- ---------- 5281 ---(-auaua ----)[---- ---------- ---------- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- ---------- ---------- 5401 ---------- ---(-----) ---------- ---------- ------]--- ---------- 5461 ---------a u-c-U----- -UUA-U-GGG AUAAUAUUU( UGUAA--G)A GAUAUUUG-A 5521 ACUUGG-AAU U--GCUAGUA AA-UUU-UAU (-UAAAUAA- )GUAGA-A-U -UGAAUGUG- 5581 U-CCCUGUUC UU|UGUA-CA CACCGCCCGU CGCUAU-C-U AA-GAU---G AU-AUGU--- 5641 guu-gugaa- -auuagu--- ---------- ---------- ---------- ---------- 5701 -------(ga aa----)--- ---------- ---------- ---------- ---------- 5761 ---------- ---ac-|ua- -CUUGAACAA U--AUG-U-A UUAG-AUCUG AU-AUAA-G- 5821 UCGUAACAUG GU-------- -----U-G-C UGUUGG(AGA A)CCAUUAGC AGGAUCA--- 5881 --uaa----- -------~|| ||| // LOCUS Vairim.sp. 5903 bp RNA RNA 11-JAN-191 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: L39114 LOCUS VAIRGOA 1245 bp DNA INV 24-AUG-1995 DEFINITION Vairimorpha sp. small subunit ribosomal RNA gene. ACCESSION L39114 KEYWORDS PCR primer; small subunit ribosomal RNA. SOURCE Vairimorpha sp DNA. ORGANISM Vairimorpha sp. Eukaryotae; Microsporidia; Microsporea; Microsporida; Pansporablastina; Burenellidae; Vairimorpha. REFERENCE 1 (bases 1 to 1245) AUTHORS Baker,M.D., Vossbrinck,C.R., Didier,E.S. and Shadduck,J.A. TITLE Small subunit ribosomal DNA phylogeny of various microsporidia with emphasis on AIDS related forms JOURNAL J. Eukaryot. Microbiol. (1995) In press COMMENT NCBI gi: 954829 FEATURES Location/Qualifiers source 1..1245 /organism="Vairimorpha sp." /sequenced_mol="DNA" rRNA 1..1245 /note="putative" /product="small subunit ribosomal RNA" primer_bind 1..18 /note="based on small subunit ribosomal RNA of Vairimorpha necatrix; PCR primer binding site; putative" primer_bind complement(1225..1245) /note="PCR primer binding site; based on small subunit ribosomal RNA of Vairimorpha necatrix; putative" BASE COUNT 404 a 173 c 286 g 382 t ORIGIN BASE COUNT 404 a 173 c 286 g 382 t 4658 others ORIGIN 1 |~~~~~~~~~ ~~~~~CACCA GGU(UGA)UU CU|GCCUGA- C-GU-A-GAC --GCUAUUCC 61 CUAA|-GAUU AA-CCCAUGC A-UGU---UU UU|------- |-------(- ---)[----- 121 ---------- ---------- ---ga----- ---------- -cauu----- uga]------ 181 -----|---A AA|A-UGGA- CUGCU-CAGU AAUA-CUCA- CUU-AAUU-- ----UUAUGU 241 ACAU<----- ---------- ---------- ---------- ---------- ---------- 301 ->uugaaa-C UAACUACGU( -U-A-AA)GU GUAGA-UAA- GAU------- ----(----) 361 ---------- -------(-- --)--|---- --<------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ------|--- ---------- ---------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 ---------- ---------- ---------- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- ---------- ---------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 ---------- ---------- ---------- ---------- ---------- ---------- 1021 -|-------- ---------- ---------- ---------- ---------- ---------- 1081 ---------> -GUGUACAGU -AA|GAGUGA GA|--CCU-A UCA--GCUA- --GUUGUUA- 1141 AG(-GUAAUG G)CUU-AACA A-|GGCAG-U GAC|GGGU-A A-CGGU|AUU -A-(CUUUG) 1201 UAA-U-AUU- CCG|GAGAAG G-AGC(CU-G AGAGACG)GC UACU-AAGUC (UAAG-)GAU 1261 -UGCAGC-A- ---------| GGG-GC-GA- AACUU-GACC -UAUGGA-U( ---uuu--)A 1321 UCUG-A-GGC -|A|GUUAUG GGAA-GU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 -----<---- ---------a aua(-----u uauau)uguu ---------- ---------- 1501 ---------u -cau---auu -----uuaaa --------ag uauaugaggu gauu->AAUU 1561 GGAG|GG-CA A-AU-C-AAG U-G(CCA-GC -AGCC|GC-G GU-AA)UACU UG-|UUCCAA 1621 G-AGUGUG|U AUGAU--GAU UGAUG-CAG| UUA--AAAAG UCCGUAGUUU |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---auauuua ag--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -aagc|aAua ---------- 3001 --UGAGGUGU AC|--UGUAU AGUUGGG-AG -AAAG(AU-G AAA---)UGU A-ACGA-C-C 3061 CUGAC-UGG- A-CGAACA-G AAGC(-GAAA )--GC|U--- GUACAC-UU| GU-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUG ---UAUUUUU -UGA-A|CA- A-GGACGUAA 3301 GCUGGAGGA- GCGAAGAUG( AUUA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CA-U -UGUAG|UUC CA--GCA-GU AAACUAUGCC GAC|GA|--- 3421 --uguga-ua uga-u----- ----(----- auauu----) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- --uu-gua-u -u-acau--- ---------- ----aaUA(- 3661 GAAA-)UUa- -GAGUUU-UU UGGC|-U|C- UGGGGAUAGU AU--GA-UC( --GCAA-)GA 3721 UUG-AAAAUU -AAAG--AAA -UUG|AC-GG -AA-GAAUA- -CCAC-AAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --A-GU|-GG 4021 AUUGUGCG|G CU-UAAUUUG (ACUCAA-CG )CGAG--GUA ACUUACCAAU AU[u---uua 4081 uuau-uuuga ga-------- cga(uucuu- -aa)------ uca------- -ga-gaa--u 4141 gau-aa---- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UA-GU- GGU-G-CAUG |GCC|GU-UU UCA|AUGGA- U|GCU(-GUG 4261 A-)AGU-UU- -UGA(UU-AA UU)UCAACAA G--ACGUGAG ACCCU-UU|- ---------- 4321 ------(--- --)[------ ---------- ---------- ---------u a--------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- ---------- ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- --------]- --|------- ---------U UAUA-GAC-A -gac(ac--- 5041 --aauca-)- gUGU-A-GGA AGGA-AAGGA UUAAAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CCG-UU A|UGCC|CU- 5221 C-AGA-CAUU UUGG-GCUGC A-CGCGCAAU ACAAU--a-g au-------- ---------- 5281 ---(-auaua ----)[---- ---------- ---------- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- ---------- ---------- 5401 ---------- ---(-----) ---------- ---------- ------]--- ---------- 5461 ---------a u-c-u----- -UUA-U-GGG AUAAUAUUU( UGUAA--G)A GAUAUUUG-A 5521 ACUUGG-AAU U--GCUAGUA AA-UUU-UAU (-UAAAUAA- )GUAGA-A-U -UGAAUGUG- 5581 U-CCCUGUUC UU|UGUA-CA CACCGCCCGU CGCUAU-C-U AA-GAU---G AU-AUAU--- 5641 guu-gugaa- -auuagu--- ---------- ---------- ---------- ---------- 5701 -------(ga aa----)--- ---------- ---------- ---------- ---------- 5761 ---------- ---ac-|ua- -CUUGAACAA U--AUG-U-A UUAG-AUCUG AU-AUAA-G- 5821 UCGUAACAUG GU-------- -----U-G-C UGUUGG(AGA A)CCAUUAGC AGGAUCA--- 5881 --uaa~~~~~ ~~~~~~~~|| ||| // LOCUS Vai.sp.ar 5903 bp RNA RNA 11-JAN-191 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: AF031539 BASE COUNT 334 a 251 c 426 g 241 t 4651 others ORIGIN 1 |~~~~~~~~~ ~~~~~NNNNN NNN(NNN)NN NN|NNNNNN- N-NN-N-NNN --NNNNNNNU 61 CAGA|-GAUU AA-GCCAUGC A-AGC---CA GC|------- |-------(- ---)[----- 121 ---------- ---------- ---gaa---- ---------- ---ga-uuac gga]------ 181 -----|---G CG|G-CGUA- CGGCU-CAGU AGGA-CAGG- GAA-A-UC-- ----UAGCCA 241 CGAA<----- ---------- ---------- ---------- ---------- ---------- 301 ->-ggagg-A UAACCACGG( -U-A-AG)CU GUGGC-UAA- aacg------ ----(----) 361 ---------- -------(-- --)--|---- --<------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ------|--- ---------- ---------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 ---------- ---------- ---------- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- ---------- ---------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 ---------- ---------- ---------- ---------- ---------- ---------- 1021 -|-------- ---------- ---------- ---------- ---------- ---------- 1081 ---------> -AGCGUGGGU -GA|GUUCUU GG|--CCU-A UCA--GCUA- --GUCGGUA- 1141 CG(-GUAAGG G)CGU-ACCG A-|GGCAA-U AAC|GGGU-A A-CGGG|GAA -U-(CGGG-) 1201 GUU-CGAUU- CCG|GAGAGG A-AGC(CU-G AGAAACG)GC UACC-ACGUC (CAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GG- AAAUU-ACCC -ACUUGG--( --AGGA--)- 1321 CCAG-A-GGU -|A|GUUAUG GGGC-GU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 -----<---- ---------- ---------- ---------- ---------- -------aaa 1501 ---gauga-g -aaa---agu -----guaaa --------aa gcuuuuug-a augc->GACU 1561 GGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCCAG 1621 G-AGCUUC|U GUGUG--AGU UGCUG-CGG| UUA--AAAAG UGCGUAGUCG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- -----gggag caggccagca 2821 -gaaaaggug -gg-gaauca cgccuagcau agugcaggaa c-ugggaccu ag--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGAc|cGga ---------- 3001 --gagGGGCA AC|--CUAAU UCUUGGG-CG -AGGG(GU-G AAA---)ACU G-CUGA-C-C 3061 CUGAG-AGG- A-GGAACA-G AGGC(-GAAG )--GC|G--- GUUGUC-cg| gg-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------ACG ---GGUCUGA -CGA-U|CA- A-GUACGUGA 3301 GCAGGAGGA- UCAAAGACG( AUUA------ ---------- ---------- ---------- 3361 ---------- GACAC)CG-U -CGUAG|UUC CU--GCA-GU AAACGAUGCC GAC|gg|--- 3421 --ggcag-ca gg-------- ----(----- -ggaa----) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---c-uug-u -u-gccu--- ---------- ----gaGG(- 3661 GAAA-)CCA- --AGUGU-ac GGGC|-U|C- CGGGGAUAGU AC--GG-GC( --GCAA-)GC 3721 UUG-AAACUU -AAAG--AAA -UUG|AC-GG -AA-GGACA- -CCAC-AAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --A-GU|-GG 4021 AGUGUGCG|G GU-UAAUUUG (ACUCAA-CG )CGGG--ACA ACUUACCGGG GC[ag--gcg 4081 acga-gaagc gaa------g gau-gaugaa g-ag------ auucacagac uga-uug--c 4141 guc-gc---- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|GU-GU- GGU-G-CAUG |GCC|GU-UU UUA|ACACG- U|GGG(-GUG 4261 A-)CUU-GU- caGG(UU-AA AU)CCGAUA- AC-GCGUGAG ACCCU-GU|- ---------- 4321 ------(--- --)[gua--- ---------- ---------- -------gau ggaa-a---- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- ---------- ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- -----uac]- --|------- ---------- GACG-GGA-C -A-U(----- 5041 --GGCAA-)G UGUC-A-GGA AGAG-CGGGU CGAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UG A|UGCC|CG- 5221 C-AGA-UGUU CCGG-GCGCC A-CGCGCACU ACAUU--g-g acggcgauau au-------- 5281 ---(-gaaa- ----)[---- ---------- ---------- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- ---------- ---------- 5401 ---------- ---(-----) ---------- ---------- ------]--- ---------a 5461 ugaggagccg u-c-c----g uggu-u-GGG AUUGACGCU( UGUAA--U)U GCGUCAUG-A 5521 ACGUGG-AAU U--CCUAGUA GU-GGG-CAG (-UCAUUAA- )CUGCA-C-G -CGAAUGAG- 5581 U-CCCUGUUC UU|UGUA-CA CACCGCCCGU CGUUAU-C-U AA-GAU---G GA-AGUG--- 5641 cgg-augag- -gucggu--- ---------- ---------- ---------- ---------- 5701 -------(-a cg----)--- ---------- ---------- ---------- ---------- 5761 ---------- ---gc-|cg- -GACGAAUCU G--UGC-U-U GUAG-AUUGG AU-ACAA-N- 5821 NNNNNNNNNN NN-------- -----N-N-N NNNNNN(NNN N)NNNNNNNN NNNNNNN--- 5881 --nnn----- -------~|| ||| // LOCUS V.corneum 5903 bp RNA RNA 11-JAN-191 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: L39112 LOCUS VIFRGOB 1259 bp DNA INV 24-AUG-1995 DEFINITION Vittaforma corneum small subunit ribosomal RNA gene. ACCESSION L39112 KEYWORDS PCR primer; small subunit ribosomal RNA. SOURCE Vittaforma corneae DNA. ORGANISM Vittaforma corneae Eukaryota; Archezoa; Microspora; Microsporea; Microsporida; Apansporoblastina; Nosematidae. REFERENCE 1 (bases 1 to 1259) AUTHORS Baker,M.D., Vossbrinck,C.R., Didier,E.S. and Shadduck,J.A. TITLE Small subunit ribosomal DNA phylogeny of various microsporidia with emphasis on AIDS related forms JOURNAL J. Eukaryot. Microbiol. (1995) In press COMMENT NCBI gi: 954830 FEATURES Location/Qualifiers source 1..1259 /organism="Vittaforma corneae" /sequenced_mol="DNA" rRNA 1..1259 /note="putative" /product="small subunit ribosomal RNA" primer_bind 1..18 /note="PCR primer binding site; based on small subunit ribosomal RNA of Vairimorpha necatrix; putative" primer_bind complement(1239..1259) /note="PCR primer binding site; based on small subunit ribosomal RNA of Vairimorpha necatrix; putative" BASE COUNT 382 a 221 c 377 g 279 t ORIGIN BASE COUNT 382 a 221 c 377 g 279 t 4644 others ORIGIN 1 |--------- -----CACCA GGU(UGA)UU CU|GCCUGA- C-GU-A-GAU --GCUAGUCU 61 CUAA|-GAUU AA-GCCAUGC A-UGU---UU CC|------- |-------(- ---)[----- 121 ---------- ---------- --------u- ---------- -caau-ca-- ---]------ 181 -----|---G GG|A-CGAA- UAGCU-CAGU AAAA-CUGC- GAU-GAUU-- ----UAGUCU 241 GGCU<----- ---------- ---------- ---------- ---------- ---------- 301 ->guguag-A UAAC-ACgu( -G-A-AA)AU GUAGC-UAA- ggga------ ----(----) 361 ---------- -------(-- --)--|---- --<------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ------|--- ---------- ---------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 ---------- ---------- ---------- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- ---------- ---------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 ---------- ---------- ---------- ---------- ---------- ---------- 1021 -|-------- ---------- ---------- ---------- ---------- ---------- 1081 ---------> -AGGCAGAAU -AA|GACGCA GG|--ACU-A UCA--GUUA- --GUUGGUA- 1141 GU(-GUAAUG G)ACU-ACCA A-|GACAG-U GAC|GGUU-G A-CGGG|AAA -U-(UAGG-) 1201 GUU-UUGUA- CCG|GAGAGG G-AGC(CU-G AGAGAUU)GC UCCC-ACGUC (CAAG-)GAC 1261 -GGCAGC-A- ---------| GGC-GC-GA- AAAUU-GCCC -ACUCU---( --uugc--)- 1321 -AGG-A-GGC -|A|GUUAUG AGAC-GU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 -----<---- ---------- ---------- ---------- ---------- ------gaag 1501 ---augag-- -uau---cuu -----guaaa --------ga gggaua---g gag-->AAUU 1561 GGAG|GG-CA A-GU-U-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)UACC GA-|CUCCAA 1621 G-AGUGUG|U AUGAG--AGA UGCUG-CAG| UUA--AAAAG UCCGUAGUCA |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ---------- 2821 ----uagaag -gg-caaaga gagaugcgag gucucacagu g-cgaugaug ga--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGAg|cCga ---------- 3001 --UGGGGAAC AU|--AGUAU ACCAGGG-CG -AGAG(AU-G AAA---)UGC C-AAGA-C-C 3061 CCUGG-UGG- A-CUGAGC-G AGGC(-GAAG )--GC|G--- AUGUUC-UU| GU-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AGG ---CAUUCGG -UGA-U|CA- A-GGACGAAG 3301 GCUGGAGUA- UCGAAAGUC( AUUA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-C -AGUAG|UUC CA--GCA-GU AAAAGAUGCC GAC|AU|--- 3421 --gcuca-uu g--------- ----(----- gaca-----) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- -----cag-u -g-ggca--- ---------- ----ggGA(- 3661 GAAA-)UCUU AGAGUU---C GGGC|-U|C- UGGGGAUAGU AU--GC-UC( --GCAA-)GG 3721 GUG-AAAAUU -AAAG--AAA -UUG|AC-GG -AG-CUACA- -CCAC-AAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --A-GU|-GG 4021 AUUGUGCG|G CU-UAAUUUG (ACUCAA-CG )CGAG--GAA ACUUACCAGG GC[caa--gu 4081 acuu-gug-- ---------- -ua(--gaaa ---)------ c--------- ----gag--c 4141 aauacag--- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|GA-GU- GGU-G-CAUG |GUC|GU-UG GAA|AUUGA- U|GGG(-AUG 4261 A-)CUU-UG- -ACC(UU-AA AU)GGUUGA- AU-GAGUGAG AUCUU-UU|- ---------- 4321 ------(--- --)[------ ---------- ---------- ---------g ---------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- ---------- ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- --------]- --|------- ---------- GACA-UGU-U -C-C(----- 5041 ---GCAC-)G GAAC-A-GGA AGGA-AAAGG CUAUAA--CA GAU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CCG-AG A|UGCC|CU- 5221 C-AGA-UGCC CUGG-GCUGC A-CGCGCAAU ACAAU--a-g cagguagaga g--------- 5281 ---(-agaga ----)[---- ---------- ---------- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- ---------- ---------- 5401 ---------- ---(-----) ---------- ---------- ------]--- ---------- 5461 -caggaaggu g-c-u----- -CAG-A-UGG ACUAUGUGC( UGUAA--G)G CACAUACG-A 5521 AAGAGG-AAU U--CCUAGUA AG-UGU-GUA (-UCAACAA- )UGGAU-A-U -UGAAUAAG- 5581 U-CCCUGUAG CU|UGUA-CA CACCGCCCGU CACUAU-C-U CA-GAU---G UU-UUUC--- 5641 agg-augaa- -gagu----- ---------- ---------- ---------- ---------- 5701 -------(cc ag----)--- ---------- ---------- ---------- ---------- 5761 ---------- ------|gc- -ucugaauaa u--gaa-a-a gUAG-AUAAG AU-GUAA-G- 5821 UCGUAACAAG GU-------- -----U-G-C GGUUGG(UGA A)CCAUUAGC AGGAUCA--- 5881 --uaa----- -------~|| ||| // LOCUS Ame.michae 5903 bp RNA RNA 11-JAN-191 DEFINITION Ameson michaelis. ACCESSION No information KEYWORDS No information. SOURCE Ameson michaelis. ORGANISM Ameson michaelis. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: L15741 LOCUS AMXRGSS 1275 bp ss-DNA INV 01-JUL-1993 DEFINITION Ameson michaelis ribosomal RNA small subunit (ssrRNA) gene. ACCESSION L15741 KEYWORDS ribosomal RNA small subunit. SOURCE Ameson michaelis DNA. ORGANISM Ameson michaelis Eukaryota; Animalia; Protozoa; Microspora; Microsporea; Microsporida; Pereziidae. REFERENCE 1 (bases 1 to 1275) AUTHORS Zhu,X., Wittner,M., Tanowitz,H., Cali,A. and Weiss,L. TITLE Nucleotide sequence of the small subunit rDNA of Ameson michaelis JOURNAL Unpublished (1993) STANDARD full automatic FEATURES Location/Qualifiers rRNA 1..1275 /product="ribosomal RNA small subunit" /gene="ssrRNA" source 1..1275 /organism="Ameson michaelis" /sequenced_mol="DNA" BASE COUNT 392 a 215 c 335 g 333 t ORIGIN BASE COUNT 392 a 215 c 335 g 333 t 4628 others ORIGIN 1 |~~~~~~~~~ ~~~~~NNNNN GGU(UGA)UU CU|GCCUGA- C-GU-agaAC --GCUAGUCU 61 CACA|-GAUU CA-GCCAUGC A-AGU---ag ua|u------ |-------(- ---)[----- 121 ---------- ---------- ---g------ ---------- --uau----- gua]------ 181 -----|---a ua|c-ACAA- UGGCU-CAGU A-UC-gagua uag-cuuu-- ----gcucuc 241 caag<----- ---------- ---------- ---------- ---------- ---------- 301 ->augug--a uacuuucag( -g-a-aa)ca gaaaa-uaa- agcauc---- ----(----) 361 ---------- -------(-- --)--|---- -- gagaggagaa -ga|agcacu ca|--CCU-A UCA--GUUA- --GUAGGUA- 1141 UG(-GUAAGG G)CAU-ACCU A-|GACGA-A GAC|GGGU-A --CGGG|GAA -G-(Gcaa-) 1201 CUU-CGAUU- CCG|GAGAGG G-CGC(CUUU AGAGAUG)GC GACC-AGUUC (UAAG-)GAG 1261 -UGCAGC-A- ---------| GGC-UC-GA- AACUU-ACCG -AAuuau--( ---aga--)- 1321 auag-A-GGU -|A|GUGAUG GAAAcGU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 -----<---- ---------- -uu(------ -auau)ag-- ---------- ---------- 1501 --------aa -aua---cug -----guaaa --------gc aaguauuauu ----->AACU 1561 G-AG|G---A A-AG-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)UACU UG-|CUCCAG 1621 G-AGCUUA|U UCGAU----A UGUUG-CGG| UUA--AAACG UCCGUAGUCG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ----cggcug ggacugaccu 2821 -guaaucuau -uu-ggucaa cagauagaua ggggcaguag c-aaguugga aa--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -agag|caau ---------- 3001 --uuggUGUC AG|--CUaau gguaUGG-GG -AGGG(GU-A AAG---)UCU G-AGGA-U-C 3061 CUGc--agg- a-GGAGCA-A AGGC(-GUAA )--GC|A--- CUGACA-AA| GA-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------UUG ---AUUCUGU -UGA-U|CA- A-GGACAGAG 3301 GCUAGAGGA- UCGAAUACG( AUUA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -AGUAG|UUC UA--GCA-GU ga------CC GAU|GA|--- 3421 --ugauu-uu g--------- ----(----- ccu------) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- -----uau-g -c-a-a---- ---------- ----UAGA-- 3661 GAAA--UCAA --------aa uaga--U|C- UCCGGGGAGU AC--AU-GC( --GCA--)CA 3721 GG---AACUU -AA-G--A-A -UUG|AC-GG -AA-GCUAG- -CCAC-AAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --G-UU|-GG 4021 AUUGUGCG|G CU-UAAUUUG (ACUCAA-AG )CGGA--AAA GCUUACCAAG CU[-----ua 4081 uuuauucaac ga-------- gu---auuua ---------- -uc------- --c-gag--a 4141 gua-aa---- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ --A|UG-GU- -GU-G-CAUG |GCC|GU-UC CUA|ACACA- U|GGA(-GUG 4261 A-)UUU-UG- -uga(uuaac cu)uccGUA- AU-CUGUGUA AAuccuca|- ---------- 4321 ------(--- --)[------ ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- ---------- ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- --------]- --|------- ---------u aaua-gcu-u ---------- 5041 ---guuu--g -aaa-a-gaa caau-ucgag caAGAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CAG-UG A|UGUC|CU- 5221 U-UGA-UAGC UUGG-GCUGC A-CGCGCAAU ACAAU--U-u uuau------ ---------- 5281 ---(guagua ag--)[---- ---------- ---------- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- ---------- ---------- 5401 ---------- ---(-----) ---------- ---------- ------]--- ---------- 5461 ---------a uau-a----- -gau-a-GGG AUUGAGGGC( UG-AA--A)G CGCUCAUG-A 5521 ACACGG-AAU A--GCUAGUA AC-GUG-AGU (-UCAAUAU- )ACGGC-G-A -UGAAUAUG- 5581 U-CCCUGUUC UU|UGUA-CA CACCGCCCGU CGUUAU-C-G AA-GAU---g ga-guga--- 5641 uuu-uugag- -ucaau---- ---------- ---------- ---------- ---------- 5701 -------(ua ua----)--- ---------- ---------- ---------- ---------- 5761 ---------- --auug|gcu acuugaauga g--uua-u-u cuaa-aacCG GU-ACAA-G- 5821 UCGUAACAAG GC-------- -----U-A-C GGUUGA(AGA A)UCAGCAGU AGGAUUA--- 5881 --GCG----- -------~|| ||| // LOCUS Micro57864 5903 bp RNA RNA 29-DEC-1998 DEFINITION Microsporidium 57864.. ACCESSION No information KEYWORDS No information. SOURCE Microsporidium 57864. ORGANISM Microsporidium 57864. REFERENCE 1 (bases 1 to 1244) AUTHORS Rice,R.N. TITLE Direct Submission JOURNAL Sciences, Australian National University, Canberra, ACT 0200, Australia Submitted (25-FEB-1997) Botany and Zoology, School of Life STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: U90885 LOCUS M5U90885 7292 bp DNA INV 29-DEC-1998 DEFINITION Microsporidium 57864 16S ribosomal RNA gene, partial sequence, internal transcribed spacer, 5.8S, 23S and 5S ribosomal RNA genes, complete sequence. ACCESSION U90885 NID g4063830 KEYWORDS . SOURCE Microsporidium 57864. ORGANISM Microsporidium 57864 Eukaryotae; Microsporidia. REFERENCE 1 (bases 1 to 7292) AUTHORS Rice,R.N. TITLE Direct Submission JOURNAL Submitted (25-FEB-1997) Botany and Zoology, School of Life Sciences, Australian National University, Canberra, ACT 0200, Australia FEATURES Location/Qualifiers source 1..7292 /organism="Microsporidium 57864" /strain="Anderson" /db_xref="taxon:57864" /dev_stage="spore resting-stage" rRNA <1..1245 /product="16S ribosomal RNA" misc_RNA 1246..1274 /note="internal transcribed spacer" rRNA 1275..1364 /note="covalently linked" /product="5.8S ribosomal RNA" rRNA 1365..3818 /product="23S ribosomal RNA" rRNA 4098..4216 /product="5S ribosomal RNA" BASE COUNT 2477 a 839 c 1276 g 2700 t BASE COUNT 403 a 172 c 286 g 384 t 4658 others ORIGIN 1 |~~~~~~~~~ ~~~~~CACCA GGU(UGA)UU CU|GCCUGA- C-GU-A-GAC --GCUAUUCC 61 CUAA|-GAUU AA-CCCAUGC A-UGU---UU UU|------- |-------(- ---)[----- 121 ---------- ---------- ---gac---- ---------- --auu----- uga]------ 181 -----|---a aa|A-UGGA- CUGCU-CAGU AAUA-CUCA- CUU-UAUU-- ----UUAUGU 241 ACAU<----- ---------- ---------- ---------- ---------- ---------- 301 ->uugaaa-c UAACUACGU( -U-A-AA)GU GUAGa-uaa- gaug------ ----(----) 361 ---------- -------(-- --)--|---- --<------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ------|--- ---------- ---------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 ---------- ---------- ---------- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- ---------- ---------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 ---------- ---------- ---------- ---------- ---------- ---------- 1021 -|-------- ---------- ---------- ---------- ---------- ---------- 1081 ---------> --UGUACAGU -AA|GAGUGA GA|--CCU-A UCA--GCUA- --GUUGUUA- 1141 AG(-GUAAUG G)CUU-AACA A-|GGCAG-U GAC|GGGU-A A-CGGU|AUU -A-(CUUUG) 1201 UAA-U-AUU- CCG|GAGAAG G-AGC(CU-G AGAGACG)GC UACU-AAGUC (UAAG-)GAU 1261 -UGCAGC-A- ---------| GGG-GC-GA- AACUU-GACC -UAUGGA-U( ---uuu--)A 1321 UCUG-A-GGC -|A|GUUAUG GGAA-GU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 -----<---- ---------a a---uauuau a---u-uguu ---------- ---------- 1501 ---------u -cau---auu -----uuaaa --------ag uauaugaggu gauu->AAUU 1561 GGAG|GG-CA A-AU-C-AAG U-G(CCA-GC -AGCC|GC-G GU-AA)UACU UG-|UUCCAA 1621 G-AGUGUG|U AUGAU--GAU UGAUG-CAG| UUA--AAAAG UCCGUAGUUU |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---auauuua ag--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -AAGc|aAua ---------- 3001 --UGAGGUGU AC|--UGUAU AGUUGGG-AG -AAAG(AU-G AAA---)UGU A-ACGA-C-C 3061 CUGAC-UGG- A-CGAACA-G AAGC(-GAAA )--GC|U--- GUACAC-UU| GU-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUG ---UAUUUUU -UGA-A|CA- A-GGACGUAA 3301 GCUGGAGGA- GCGAAGAUG( AUUA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CA-U -UGUAG|UUC CA--GCA-GU AAACUAUGCC GAC|GA|--- 3421 --uguga-ua uga------- ----(----u auauu----) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- --uu-gua-u -u-acau--- ---------- ----aaUA(- 3661 GAAA-)UUA- -GAGUUU-UU UGGC|-U|C- UGGGGAUAGU AU--GA-UC( --GCAA-)GA 3721 UUG-AAAAUU -AAAG--AAA -UUG|AC-GG -AA-GAAUA- -CCAC-AAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --A-GU|-GG 4021 AUUGUGCG|G CU-UAAUUUG (ACUCAA-CG )CGAG--GUA ACUUACCAAU AU[u---uua 4081 uuau-uuuga ga------cg auu(-uuu-- ---)------ aauca----- -ga-gaa--u 4141 gau-aa---- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UA-GU- GGU-G-CAUG |GCC|GU-UU UCA|AUGGA- U|GCU(-GUG 4261 A-)AGU-UU- -UGA(UU-AA UU)UCAACA- AG-ACGUGAG ACCCU-UU|- ---------- 4321 ------(--- --)[--uauu a--------- ---------- ---------- ua-------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- ---------- ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- --------]- --|------- ---------- GACA-GAC-A -C-A(----- 5041 ----auc-)A GUGU-A-GGA AGGA-AAGGA UUAAAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CCG-UU A|UGCC|CU- 5221 C-AGA-CAUU UUGG-GCUGC A-CGCGCAAU ACAAU--a-g a--------- ---------- 5281 ---(uauaua a---)[---- ---------- ---------- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- ---------- ---------- 5401 ---------- ---(-----) ---------- ---------- ------]--- ---------- 5461 ---------- u-c-u----- -UUA-U-GGG AUAAUAUUU( UGUAA--G)A GAUAUUUG-A 5521 ACUUGG-AAU U--GCUAGUA AA-UUU-UAU (-UAAAUAA- )GUAGA-A-U -UGAAUGUG- 5581 U-CCCUGUUC UU|UGUA-CA CACCGCCCGU CGCUAU-C-U AA-GAU---G AU-AUAU--- 5641 guu-gugaa- -auuagu--- ---------- ---------- ---------- ---------- 5701 -------(ga aa----)--- ---------- ---------- ---------- ---------- 5761 ---------- ---ac-|ua- -cuugaacAA U--aug-u-a uUAG-AUCUG AU-AUAA-G- 5821 UCGUAACAUG GU-------- -----U-G-C UGUUGG(AGA A)CCAUUAGC AGGAUCA--- 5881 --UAA~~~~~ ~~~~~~~~|| ||| // LOCUS Endo.schub 5903 bp RNA RNA 11-JAN-191 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: L39109 LOCUS ENLRGOA 1252 bp DNA INV 24-AUG-1995 DEFINITION Endoreticulatus schubergi small subunit ribosomal RNA gene. ACCESSION L39109 KEYWORDS PCR primer; small subunit ribosomal RNA. SOURCE Endoreticulatus schubergi DNA. ORGANISM Endoreticulatus schubergi Eukaryota; Archezoa; Microspora; Microsporea; Microsporida. REFERENCE 1 (bases 1 to 1252) AUTHORS Baker,M.D., Vossbrinck,C.R., Didier,E.S. and Shadduck,J.A. TITLE Small subunit ribosomal DNA phylogeny of various microsporidia with emphasis on AIDS related forms JOURNAL J. Eukaryot. Microbiol. (1995) In press COMMENT NCBI gi: 954752 FEATURES Location/Qualifiers source 1..1252 /organism="Endoreticulatus schubergi" /sequenced_mol="DNA" rRNA 1..1252 /note="putative" /product="small subunit ribosomal RNA" primer_bind 1..18 /note="based on small subunit ribosomal RNA of Vairimorpha necatrix; PCR primer binding site; putative" primer_bind complement(1232..1252) /note="based on small subunit ribosomal RNA of Vairimorpha necatrix; PCR primer binding site; putative" BASE COUNT 359 a 240 c 399 g 254 t ORIGIN BASE COUNT 359 a 240 c 399 g 254 t 4651 others ORIGIN 1 |~~~~~~~~~ ~~~~~CACCA GGU(UGA)UU CU|GCCUGA- C-GU-A-GAC --GCUAGUCU 61 CUGA|-GAUU AA-GCCAUGC A-UGU---CU AU|------- |-------(- ---)[----- 121 ---------- ---------- ---ggaac-- ---------- ---------- --a]------ 181 -----|---A GG|A-CGAA- CAGCU-CAGU AAAA-CUGC- GAU-GAUU-- ----CAGUCU 241 GUCU<----- ---------- ---------- ---------- ---------- ---------- 301 ->gucaag-A UAACCACgc( -G-A-AA)GU GUGGC-UAA- gagg------ ----(----) 361 ---------- -------(-- --)--|---- --<------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ------|--- ---------- ---------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 ---------- ---------- ---------- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- ---------- ---------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 ---------- ---------- ---------- ---------- ---------- ---------- 1021 -|-------- ---------- ---------- ---------- ---------- ---------- 1081 ---------> -GGACAGAAC -AA|GACGCA GG|--ACU-A UCA--GUUA- --GUUGGUA- 1141 GU(-GUAAUG G)ACU-ACCA A-|GACGG-U GAC|GGUU-G A-CGGG|GAA -U-(GAGG-) 1201 GUU-CUAUA- CCG|GAGAGG G-AGC(CU-G AGAGAUA)GC UCCC-ACGUC (CAAG-)GAC 1261 -GGCAGC-A- ---------| GGC-GC-GA- AAAUU-GCCC -Acug----- --uuug---- 1321 gagg-a-GGC -|A|GUUAUG AGAC-GU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 -----<---- ---------- ---------- ---------- ---------- ------gaga 1501 ---aagag-- -ugc----uu -----guaaa --------ga gaagca---g gag-->AAUU 1561 GGAG|GG-CA A-GU-U-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)UACC GA-|CUCCAA 1621 G-AGUGUG|U AUGAG--AGA UGCUG-CAG| UUA--AAAAG UCCGUAGUCG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ---------- 2821 ------ugga -ga-cggaaa gagaggcgga gccucuuuga g-augcucug ga--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GAAg|cCaa ---------- 3001 --CAGGGGGC AC|--AGUAU ACCAGGG-CG -AGAG(AU-G AAA---)UGC C-AAGA-C-C 3061 CCUGG-UGG- A-CUGAGC-G AGGC(-GAAA )--GC|G--- GUGCUC-UU| GU-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------GGG ---UGUUCGG -UGA-U|CA- A-GGACGAAG 3301 GCUGGAGGA- UCGAAAGUG( AUUA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-C -UGUAG|UUC CA--GCA-GU AAAAGAUGCC GAC|AU|--- 3421 --gcuc-ggu g--------- ----(----- gcaa-----) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- -----cacgg -g-gca---- ---------- ----ggGA(- 3661 GAAA-)UCUU AGAGUU---C GGGC|-U|C- UGGGGAUAGU AU--GC-UC( --GCAA-)GG 3721 GUG-AAAAUU -AAAG--AAA -UUG|AC-GG -AG-CUACA- -CCAC-AAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --A-GU|-GG 4021 AUUGUGCG|G CU-UAAUUUG (ACUCAA-CG )CGAG--GAA GCUUACCAGG GC[caa--gu 4081 g-cu-gug-- ---------- -ga(--gaaa ---)------ g--------- ----gag--c 4141 aguacag--- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|AA-GU- GGU-G-CAUG |GUC|GU-UG GAA|AUUGA- U|GGG(-AUG 4261 A-)CUU-UG- -GCC(UU-AA AU)GGCUGA- AU-GAGUGAG AUCUU-UG|- ---------- 4321 ------(--- --)[------ ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- ---------- ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- --------]- --|------- ---------- GACA-UGU-U -C-C(----- 5041 ----cac-)G GAAC-A-GGA AGGG-GAGG- CUAUAA--CA GAU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CAG-AG A|UGCC|CU- 5221 U-AGA-UGCC CUGG-GCUGC A-CGCGCAAU ACAAU--a-g cacguagacg u--------- 5281 ---(-agaga ----)[---- ---------- ---------- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- ---------- ---------- 5401 ---------- ---(-----) ---------- ---------- ------]--- ---------- 5461 -acaacacgu g-c-u----- -GAG-G-UGG ACUGUGCUC( UGCAA--G)G GGCACACG-A 5521 AAGAGG-AAU U--CCUAGUA AG-CGC-CCA (-UCACCAG- )UGGGC-G-U -UGAAUCAG- 5581 U-CCCUGUAG CU|UGUA-CA CACCGUCCGU CACUAU-C-U CA-GAU---G UU-UUUC--- 5641 ggg-augaa- -gagu----- ---------- ---------- ---------- ---------- 5701 -------(cc ag----)--- ---------- ---------- ---------- ---------- 5761 ---------- ------|gc- -ucugaauaa c--gga-a-a gUAG-AUAAG AU-GUAA-G- 5821 UCGUAGCAAG GU-------- -----U-G-C GGUCGG(UGA A)CCAUUAGC AGGAUCA--- 5881 --UAA~~~~~ ~~~~~~~~|| ||| // LOCUS Ent.salmon 5903 bp RNA RNA 11-JAN-191 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: U10883 LOCUS ESALSRRN 1275 bp DNA INV 08-OCT-1994 DEFINITION Enterocytozoon salmonis small subunit ribosomal RNA gene. ACCESSION U10883 KEYWORDS . SOURCE Enterocytozoon salmonis. ORGANISM Enterocytozoon salmonis Eukaryotae; Hypochondria; Microspora; Microsporea; Microsporida; Apansporoblastina; Enterocytozoonidae; Enterocytozoon. REFERENCE 1 (bases 1 to 1275) AUTHORS Da Silva,A.J., Hedrick,R.P., Slemenda,S.B. and Pieniazek,N.J. TITLE Small Subunit rRNA Sequence of Enterocytozoon salmonis (Microsporida) JOURNAL Unpublished STANDARD full automatic REFERENCE 2 (bases 1 to 1275) AUTHORS Pieniazek,N.J. TITLE Direct Submission JOURNAL Submitted (15-JUN-1994) Pieniazek N. J., Centers for Disease Control, Division of Parasitic Diseases, 4770 Buford Highway NE, Atlanta, GA 30341-3724, USA STANDARD full automatic COMMENT NCBI gi: 555701 FEATURES Location/Qualifiers source 1..1275 /organism="Enterocytozoon salmonis" primer_bind 1..21 /note="PCR primer based on V. necatrix SSU-rRNA; putative" rRNA 1..1275 /product="small subunit ribosomal RNA" primer_bind complement(1252..1275) /note="PCR primer based on V. necatrix SSU-rRNA; putative" BASE COUNT 354 a 248 c 374 g 299 t ORIGIN BASE COUNT 354 a 248 c 374 g 299 t 4628 others ORIGIN 1 |~~~~~~~~~ ~~~~~CACCA GGU(UGA)UU CU|GCCUGA- C-GU-G-GGU --GCUAGCCU 61 CUAA|-GAUU UA-GCCAUGC A-UGC---UU UG|------- |-------(- ---)[----- 121 ---------- ---------- --ugaaccc- ---------- --aga-cggg gga]------ 181 -----|---a cg|g-CGAA- CGGCU-CAGU AAUG-UUGC- GGU-GAUC-- ----UGCUCU 241 GGUU<----- ---------- ---------- ---------- ---------- ---------- 301 g>agaaag-A UAACCACGG( -U-A-AA)CU GUGGc-uaa- g--------- ----(----) 361 ---------- -------(-- --)--|---- --<------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ------|--- ---------- ---------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 ---------- ---------- ---------- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- ---------- ---------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 ---------- ---------- ---------- ---------- ---------- ---------- 1021 -|-------- ---------- ---------- ---------- ---------- ---------- 1081 ---------> AGACCAGAAU -GA|GCUGCA AC|--CCU-A UCA--GUUU- --GUUGGAA- 1141 GU(-GUAAAA G)ACU-CCCA A-|GACGU-C GAC|GGGU-A A-CGGG|AAA -U-(CAGU-) 1201 GUU-UGAUU- CCG|GAGAGG G-AGC(CU-G AGAGAUG)GC UCCC-ACGUC (CAAG-)GAU 1261 -GGCAGC-A- ---------| GGC-GC-GA- AAAUU-GUCC -ACUCUU--( --ugga--)- 1321 GAGG-A-GAC -|A|GUUAUG AGGC-GU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 -----<---- ---------- ---------- ---------- ---------- -------gau 1501 ---uaaaaga -gcga--agu -----guaaa c--------a ccuucgugua acgc->AAUU 1561 GGAG|GG-CA A-GU-UUUGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AA-|CUCCAA 1621 G-AGUGCC|C AUGGU--GGA UGCUG-CAG| UUA--AAAAG UCCGUAGUCG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- -----uagau gcaauuaaa- 2821 ----gggugc -gg-aucaag cg-cacugag u----uuguu g-aguuguag c---->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGAg|cGga ---------- 3001 --UAGGGAGC AU|--GGUAU AGGUUGG-CG -AAGA(AU-G AAA---)UCU C-AAGA-C-C 3061 CAACC-UGG- A-CCAACU-G AGGC(-GAAA )--GC|G--- GUGCUC-UU| AU-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------ACG ---CAUCCGA -GGA-U|CA- A-GGACGAAG 3301 GCUGGAGGA- UCGAAAGUG( AUUA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-C -UGUAG|UUC CA--GCA-GU AAACUAUGCC GAC|au|--- 3421 --ucucu-gu cc-------- ----(----- --agc----) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---g-gac-g -g-ggaa--- ---------- ----GGGA(- 3661 GAAA-)UCUU --AGUUU-UC GGGC|-U|C- UGGGGAUAGU AC--GC-UU( --GCAA-)GA 3721 GUG-AAACUU -AAAGcgAAA -UUG|AC-GG -AA-GGACA- -CUAC-CAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --A-GU|-GG 4021 AUUGUACU|G CU-UAAUUUG (ACUCAA-CG )CGGG--AAA ACUUACCAGG GU[caa--gu 4081 ucu--ccg-- -------u-- ag-(aucgag u--)-----a cgu------- -ga---g--g 4141 ggaacga--- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|GA-GU- GGU-G-CAUG |GCC|GU-UG GAA|AUUGA- U|GGG(-AUG 4261 A-)CUU-UU- -AGC(UU-AA AU)GCUGAA- AC-CAGUGAG AUCUU-CU|- ---------- 4321 ------(--- --)[------ ---------- ---------- ---------- -a-------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- ---------- ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- --------]- --|------- ---------- GACA-GGU-G -C-C(----- 5041 ---aucc-)G GCAC-A-GGA GGGC-GAAGG CGAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CCG-UG A|UGCC|CU- 5221 U-AGA-UAUC CUGG-GCUGC A-AGUGCAAU ACAAU--a-u ccaug-ucg- ---------- 5281 ---(aucaag aaag)[g--- ---------- ---------- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- ---------- ---------- 5401 ---------- ---(-----) ---------- ---------- ------]--- ---------- 5461 --ugauuaug g-a-u----- -gaG-C-AGG AUUAGCUCU( UGUAA--A)U GAGCUAUG-A 5521 AUGAGG-AAU U--CCUAGUA AC-AGU-GUC (-UCACUAA- )GGCAU-U-G -UGAAUGCG- 5581 U-CCCUGUUC UU|UGUA-CA CACCGCCCGU CACUAU-U-U CA-GAU---G GC-CAUG--- 5641 aag-augaa- -gagc----- ---------- ---------- ---------- ---------- 5701 -------(uu cg----)--- ---------- ---------- ---------- ---------- 5761 ---------- ------|gu- -ucugaauau u--cau-g-u cUAG-AUAAA GU-ACAA-G- 5821 UCGUAACAUG GU-------- -----U-G-C UGUUGG(NNN N)NNNNNNNN NNNNNNN--- 5881 --NNN~~~~~ ~~~~~~~~|| ||| // LOCUS G.atherina 5903 bp RNA RNA 11-JAN-191 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: U15987 LOCUS GAU15987 1335 bp DNA INV 01-NOV-1994 DEFINITION Glugea atherinae small subunit ribosomal RNA gene. ACCESSION U15987 KEYWORDS . SOURCE Glugea atherinae. ORGANISM Glugea atherinae Eukaryotae; Microsporidia; Microsporea; Microsporida; Pansporoblastina; Glugeidae; Glugea. REFERENCE 1 (bases 1 to 1335) AUTHORS Da Silva,A.J., Slemenda,S.B., Ditrich,O. and Pieniazek,N.J. TITLE Small subunit rRNA sequence of Glugea atherinae (Microsporida) JOURNAL Unpublished STANDARD full automatic REFERENCE 2 (bases 1 to 1335) AUTHORS Pieniazek,N.J. TITLE Direct Submission JOURNAL Submitted (17-OCT-1994) Norman J. Pieniazek, Centers for Disease Control, Division of Parasitic Diseases, 4770 Buford Highway NE, Atlanta, GA 30341-3724, USA STANDARD full automatic COMMENT NCBI gi: 562115 FEATURES Location/Qualifiers source 1..1335 /organism="Glugea atherinae" primer_bind 1..21 /note="PCR primer based on N. corneum SSU-rRNA; putative" rRNA 1..1335 /product="small subunit ribosomal RNA" primer_bind complement(1312..1335) /note="PCR primer based on N. corneum SSU-rRNA; putative" BASE COUNT 384 a 259 c 428 g 264 t ORIGIN BASE COUNT 384 a 259 c 428 g 264 t 4568 others ORIGIN 1 |~~~~~~~~~ ~~~~~CACCA GGU(UGA)UU CU|GCCUGA- C-GU-G-GAU --GCUAGUCU 61 CAUA|-GGUU AA-GCCAUGC A-UGU-gcaa gc|------- |-------(- ---)[----- 121 ---------- ---------- ---gaagc-- ---------- -guaa---gu gga]------ 181 -----|---g cg|g-CGCA- AGGCU-CAGU AACG-GGCG- AGU-AUUU-- -----GAUCU 241 CCUA<----- ---------- ---------- ---------- ---------- ---------- 301 ->gagugg-A UAUCCUCUG( -U-A-AC)CG GAGGg-caa- aaca------ ----(----) 361 ---------- -------(-- --)--|---- -- -UAGGAGAGU -AA|GAA-GC CA|U-CCC-A UCA--GUUA- --GUAAGUA- 1141 GG(-GUAAGG G)CCU-ACUU A-|GACGA-A GAC|GGGU-A --CGGG|GAA -U-(UAUC-) 1201 GUU-UGAUU- CCG|GAGAGG G-AGC(CU-G AGAGACG)GC UACC-AGGUC (CAAG-)GAC 1261 -AGCAGC-A- ---------| GGC-GC-GA- AAAUU-ACCG -CAGCCu-g( --cauu--)c 1321 aGGG-C-GGU -|A|GUAAGG AGAC-GU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 -----<---- ---------- ---------- ---------- ---------- ------gaaa 1501 ---acaa--u -gug---cgg -----gcaaa --------aa acgcac---u aga-->UACA 1561 GGAG|GA-CA A-GA-C-UGG U-G(CCA-GC -ACCC|GC-G GU-AA)UACC AG-|CUCCUG 1621 G-AGUGUC|U AUGAUauGAU UGCUG-CAG| UUA--AAGAG UUCGUAGUCg |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- aagugguuau aacgguguaa 2821 -caggccuuc -uc-ucaagg aggguuaugc gccgugauuc c-auggaaua a---->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGAg|cGuu ---------- 3001 --UAGGGGCC AG|--GUUAU UAAGCGA-CG -AGGG(GU-G AAA---)UCU G-GUGA-C-U 3061 CGCUU-AGG- A-GCAACA-G AGGC(-GAAA )--GC|G--- CUGGCC-AG| GA-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------GCG ---AAUCCGA -UGA-U|AA- A-GGACGUAG 3301 GCUAGAGGA- UCGAAGACG( AUUA------ ---------- ---------- ---------- 3361 ---------- GAGAC)CG-U -UGUAG|UUC UA--GCA-GU AAACGAUGCC GAU|AC|--- 3421 --cgugg-ug cg-------- ----(----- gaua-----) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---c-gcgac -g-cgg---- ---------- ----aaGA(- 3661 GAAA-)UC-- -GAGUAG--- -GGC|-C|C- UGGGGAGAGU AC--AC-GC( --GCAA-)GC 3721 GAG-AAAUUU -AAAG-gAAA -UUG|AC-GG -AA-GAACA- -CCAC-AAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --A-GU|-GG 4021 AGUGUGCG|G CU-UAAUUUG (ACUCAA-CG )CGGG--ACA GCUUACCAGG CC[cga---- 4081 -cgg-ccgga cga------- -gu(guugu- a-c)------ acgau----- --a-ggu--c 4141 gaa------- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|GA-GU- GGU-G-CAUG |GCC|GU-UA ACG|ACGAG- U|GAG(-GUG 4261 A-)CUU-UU- -GGG(UU-AA AU)CCGGGA- AG-UAGUGAG ACCCC-UA|- ---------- 4321 ------(--- --)[cc---- ---------- ---------- ---------g aaa------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- ---------- ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ------gg]- --|------- ---------- GACA-GGU-G -C-C(----- 5041 ---GAAA-)- GCAC-A-GGA AGGA-AGGGU CAAGAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CAG-UG A|UGCC|CU- 5221 C-AGA-UGGU CUGG-GCUGC A-CGCGCACU ACAGU--G-g ucauagaaau ---------- 5281 ---(gaaacg auag)[a--- ---------- ---------- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- ---------- ---------- 5401 ---------- ---(-----) ---------- ---------- ------]--- ---------- 5461 auuaaagaug a-u-c-g--- -AGA-G-GGA A-UGAGCUU( UGUAA--G)A GGCUCAGG-A 5521 ACGAGG-AAU U--GCUAGUA AU-CGC-GGA (CUCAUUAA- )GACGC-G-A -UGAAUACG- 5581 U-CCCUGUUC UU|UGUA-CA CACCGCCCGU CGUUAU-C-G AA-GAU---G GA-GUCA--- 5641 ggc-gcgaa- -caagc---- ---------- ---------- ---------- ---------- 5701 -------(ga ga----)--- ---------- ---------- ---------- ---------- 5761 ---------- ------|gc- gagugagug- ca-gga-u-u cUAG-AUGUG AU-ACAA-G- 5821 UCGUAACAUG GU-------- -----U-G-C UGUUGG(NNN N)NNNNNNNN NNNNNNN--- 5881 --nnn~~~~~ ~~~~~~~~|| ||| // LOCUS Ichthyo.sp 5903 bp RNA RNA 11-JAN-191 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: L39110 LOCUS IHHRGOA 1352 bp DNA INV 24-AUG-1995 DEFINITION Ichthyosporidium sp. small subunit ribosomal RNA gene. ACCESSION L39110 KEYWORDS PCR primer; small subunit ribosomal RNA. SOURCE Ichthyosporidium sp DNA. ORGANISM Ichthyosporidium sp. Eukaryota; Archezoa; Microspora; Microsporea; Microsporida; Apansporoblastina; Nosematidae. REFERENCE 1 (bases 1 to 1352) AUTHORS Baker,M.D., Vossbrinck,C.R., Didier,E.S. and Shadduck,J.A. TITLE Small subunit ribosomal DNA phylogeny of various microsporidia with emphasis on AIDS related forms JOURNAL J. Eukaryot. Microbiol. (1995) In press COMMENT NCBI gi: 954761 FEATURES Location/Qualifiers source 1..1352 /organism="Ichthyosporidium sp." /sequenced_mol="DNA" rRNA 1..1352 /note="putative" /product="small subunit ribosomal RNA" primer_bind 1..18 /note="PCR primer binding site; based on small subunit ribosomal RNA of Vairimorpha necatrix; putative" primer_bind complement(1332..1352) /note="PCR primer binding site; based on small subunit ribosomal RNA of Vairimorpha necatrix; putative" BASE COUNT 386 a 270 c 418 g 278 t ORIGIN BASE COUNT 386 a 270 c 418 g 278 t 4551 others ORIGIN 1 |~~~~~~~~~ ~~~~~CACCA GGU(UGA)UU CU|GCCUGA- C-GU-G-GAU --GCUAGUCU 61 CUAA|-AGUU AA-GCCAUGG A-UGU---CU AA|------- |-------(- ---)[----- 121 ---------- ---------- ---gcaaag- ---------- -cgua-aguc -ga]------ 181 -----|---g cg|g-caca- -gGCU-CAGU AACg--ggc- gaA-UAUU-- ----UAAUCU 241 CCUC<----- ---------- ---------- ---------- ---------- ---------- 301 ->gagugg-A UAUCCUCug( -U-A-AC)CG GAGGg-caa- aacac----- ----(----) 361 ---------- -------(-- --)--|---- -- -GGGGAGAGU -AA|GACGCC AG|--UCC-A UCA--GUUA- --GUAAGUA- 1141 GG(-GUAAGG G)CCU-ACUU A-|GACGA-A UAC|GGAU-A --CGGG|GAA -U-(UAUC-) 1201 GUU-UGAUU- CCG|GAGAGG G-AGC(CU-G AGAGACG)GC UACC-GGGUC (CAAG-)GAC 1261 -AACAGC-A- ---------| GGC-GC-GA- AAAUU-ACCG -CAGCCu-g( --cauu--)- 1321 ---c-A-GGU C|G|GUAGUA AGGA-GA--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 -----<---- ---------- cgu(------ -guaa)acg- ---------- ---------- 1501 --------au -gug---cag -----guaaa --------ga augcacugua ----->UACA 1561 GGAG|GA-CA A-GA-C-UGG U-G(CCA-GC -ACCC|GC-U GU-AA)UACC AG-|CUCCUG 1621 G-AGUGUC|U AUGAU--GAU UGCUG-CAG| UUA--AAGCG UUCGUAGUCG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- -aaccggguu gaauugcgug 2821 -acagucaga -cu-cucaag gugugaugag cgcugugauu c-uggggaau aa--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGAg|uGuu ---------- 3001 --UAGGGGCC AG|--GGUAU UAAACGG-CA -AGCG(GU-G AAA---)UGU G-UUGA-CCC 3061 GUUUA-UGG- A-GCGACA-G AGGC(-GAAA )--GG|C--- UGGCCA-GG| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- --------CA ---AAUCCGA -UGA-U|AA- A-GGACGUAG 3301 GCUAGAGGA- UCGAAGACG( AUUA------ ---------- ---------- ---------- 3361 ---------- GAGAC)CG-U -UGUAG|UUC UA--GCA-GU AAACAAUGCC GAU|GU|--- 3421 --ugugg-ug ccg------- ----(----- uaa------) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- --cg-gac-g -c-a-a---- ---------- ----aaGA(- 3661 GAAA-)UCUA ---GUA---- GGGC--C|C- UGGGGAGAGU AC--AC-GC( --GCAA-)CA 3721 GGA-AAUUUA -AAGG--AAA -UUG|AC-GG -AA-GAACA- -CCAC-AAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --A-GU|-GG 4021 AGUGUGCG|G CU-UAAUUUG (ACUCAA-CG )CGGG--ACA CCUUACCGGG CC[cac-ggc 4081 cac---acga ---------- gug---ugac a--------- cac------- -ga-uagccg 4141 ag-------- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|GA-GU- GGU-G-CAUG |GCC|CG-UU AAC|GACAA- G|UGA(-GUG 4261 A-)UCU-UU- -GGG(UU-AA GU)CCGUAA- AU-UAGUGAG ACCCC-AG|- ---------- 4321 ------(--- --)[------ ---------- ---------- -------caa ag-------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- ---------- ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- --------]- --|------- ---------- GACA-GGU-G -C--(----- 5041 ---gcaaa)- GCAC-A-GGA AGGA-UGGGU CAAGGA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CAG-UG A|UGCC|CU- 5221 U-AGA-UGGU CCGG-GCUGC A-CGCGCACU ACAGU--g-g ucgccgaaau uu-------- 5281 ---(-agaua ua--)[---- ---------- ---------- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- ---------- ---------- 5401 ---------- ---(-----) ---------- ---------- ------]--- ---------g 5461 agcuaaaggc gau-c----- -GAG-A-GGG AAUGAGCUU( UGGAA--G)A GGCUCAGG-A 5521 ACGUGG-AAU U--GCUAGUA AU-CGC-GGA (CUCAUUAA- )GACGC-G-A -UGAAUACG- 5581 U-CCCUGUUC UU|UGUA-CA CACCGCCCGU CGUUAU-C-G AA-UAC---G GU-GCUC--- 5641 GGCG-CGAG- CAAGgu---- ---------- ---------- ---------- ---------- 5701 -------(ga aa----)--- ---------- ---------- ---------- ---------- 5761 ---------- ---uc-|acu --gagcgagc gc-aag-gua cCGG-AUCUG AU-ACAA-G- 5821 UCGUAACAAG GU-------- -----a-G-C UGUAGG(AGA A)CCAUUAGC AGGAUCA--- 5881 --UAA~~~~~ ~~~~~~~~|| ||| // LOCUS V.corneae 5903 bp RNA RNA 11-JAN-191 DEFINITION Vittaforma corneae subsp. was Nosema corneum. ACCESSION No information KEYWORDS No information. SOURCE Vittaforma corneae subsp. was Nosema corneum. ORGANISM Vittaforma corneae. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: U11046 LOCUS NCORNSRR 1237 bp DNA INV 08-OCT-1994 DEFINITION Nosema corneum small subunit ribosomal RNA gene. ACCESSION U11046 KEYWORDS . SOURCE Nosema corneum. ORGANISM Nosema corneum Eukaryotae; Hypochondria; Microspora; Microsporea; Microsporida; Apansporoblastina; Nosematidae; Nosema. REFERENCE 1 (bases 1 to 1237) AUTHORS Da Silva,A.J., Slemenda,S.B., Visvesvara,G.S. and Pieniazek,N.J. TITLE Small Subunit rRNA Sequence of Nosema corneum (Microsporida) Isolated from a Patient with AIDS JOURNAL Unpublished STANDARD full automatic REFERENCE 2 (bases 1 to 1237) AUTHORS Pieniazek,N.J. TITLE Direct Submission JOURNAL Submitted (20-JUN-1994) Pieniazek N. J., Centers for Disease Control, Division of Parasitic Diseases, 4770 Buford Highway NE, Atlanta, GA 30341-3724, USA STANDARD full automatic COMMENT NCBI gi: 555732 FEATURES Location/Qualifiers source 1..1237 /organism="Nosema corneum" primer_bind 1..21 /note="PCR primer based on V. necatrix SSU-rRNA; putative" rRNA 1..1237 /product="small subunit ribosomal RNA" primer_bind complement(1214..1237) /note="PCR primer based on V. necatrix SSU-rRNA; putative" BASE COUNT 372 a 215 c 374 g 276 t ORIGIN BASE COUNT 372 a 215 c 374 g 276 t 4666 others ORIGIN 1 |~~~~~~~~~ ~~~~~CACCA GGU(UGA)UU CU|GCCUGA- C-GU-A-GAU --GCUAGUCU 61 CUAA|-GAUU AA-GCCAUGC A-UGU---UU CC|------- |-------(- ---)[----- 121 ---------- ---------- --------g- ---------- -caau-ca-- ---]------ 181 -----|---G GG|A-CGAA- UAGCU-CAGU AAAA-CUGC- GAU-GAUU-- ----UAGUCU 241 GGCU<----- ---------- ---------- ---------- ---------- ---------- 301 ->guguag-A UAACUACGU( -G-A-AA)AU GUAGC-UAA- ggg------- ----(----) 361 ---------- -------(-- --)--|---- --<------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ------|--- ---------- ---------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 ---------- ---------- ---------- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- ---------- ---------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 ---------- ---------- ---------- ---------- ---------- ---------- 1021 -|-------- ---------- ---------- ---------- ---------- ---------- 1081 ---------> aAGGCAGAAU -AA|GACGCA GG|--ACU-A UCA--GUUA- --GUUGGUA- 1141 GU(-GUAAUG G)ACU-ACCA A-|GACAG-U GAC|GGUU-G A-CGGG|AAA -U-(UAGG-) 1201 GUU-UUGUA- CCG|GAGAGG G-AGC(CU-G AGAGAUU)GC UCCC-ACGUC (CAAG-)GAC 1261 -GGCAGC-A- ---------| GGC-GC-GA- AAAUU-GCCC -ACUCU---( --uugc--)- 1321 -AGG-A-GGC -|A|GUUAUG AGAC-GU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 -----<---- ---------- ---------- ---------- ---------- ------gaag 1501 ---augag-- -uau---cuu -----guaaa --------ga gggaua---g gag-->AAUU 1561 GGAG|GG-CA A-GU-U-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)UACC GA-|CUCCAA 1621 G-AGUGUG|U AUGAG--AGA UGCUG-CAG| UUA--AAAAG UCCGUAGUCA |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ---------- 2821 ----uagaag -gg-caaaga gagaugcgag gucucacagu g-cgaugaug ga--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGAg|cCga ---------- 3001 --UGGGGAAC AU|--AGUAU ACCAGGG-CG -AGAG(AU-G AAA---)UGC C-AAGA-C-C 3061 CCUGG-UGG- A-CUGAGC-G AGGC(-GAAG )--GC|G--- AUGUUC-UU| GU-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AGG ---CAUUCGG -UGA-U|CA- A-GGACGAAG 3301 GCUGGAGUA- UCGAAAGUG( AUUA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-C -AGUAG|UUC CA--GCA-GU AAAAGAUGCC GAC|AU|--- 3421 --gcuca-uu g--------- ----(----- gaca-----) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- -----cag-u -g-ggca--- ---------- ----GGGA(- 3661 GAAA-)UCU- -UAGAGU-UC GGGC|-U|C- UGGGGAUAGU AU--GC-UC( --GCAA-)GG 3721 GUG-AAAAUU -AAAG--AAA -UUG|AC-GG -AG-CUACA- -CCAC-AAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --A-GU|-GG 4021 AUUGUGCG|G CU-UAAUUUG (ACUCAA-CG )CGAG--GAA ACUUACCAGG GC[caa--gu 4081 a-uu-gug-- ---------- -ua(--gaaa ---)------ c--------- ----gag--c 4141 aauacag--- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|GA-GU- GGU-G-CAUG |GUC|GU-UG GAA|AUUGA- U|GGG(-AUG 4261 A-)CUU-UG- -ACC(UU-AA AU)GGUUGA- AU-GAGUGAG AUCUU-UU|- ---------- 4321 ------(--- --)[------ ---------- ---------- ---------g ---------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- ---------- ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- --------]- --|------- ---------- GACA-UGU-U -C-C(----- 5041 ---GCAC-)G GAAC-A-GGA AGGA-AAAGG CUAUAA--CA GAU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CCG-AG A|UGCC|CU- 5221 C-AGA-UGCC CUGG-GCUGC A-CGCGCAAU ACAAU--a-g ca-------- ---------- 5281 ---(------ ----)[ggua gagagagaga caggaagg-- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- ---------- ---------- 5401 ---------- ---(-----) ---------- ---------- ------]--- ---------- 5461 ---------u g-c-u----- -CAG-A-UGG ACUAUGUGC( UGUAA--G)G CACAUACG-A 5521 AAGAGG-AAU U--CCUAGUA AG-UGU-GUA (-UCAACAA- )UGGAU-A-U -UGAAUAAG- 5581 U-CCCUGUAG CU|UGUA-CA CACCGCCCGU CACUAU-C-U CA-GAU---G UU-UUUC--- 5641 agg-augaa- -gagu----- ---------- ---------- ---------- ---------- 5701 -------(cc ag----)--- ---------- ---------- ---------- ---------- 5761 ---------- ------|gc- -ucugaauaa u--gaa-a-a gUAG-AUAAG AU-GUAA-G- 5821 UCGUAACAUG GU-------- -----U-G-C UGUUGG(NNN N)NNNNN-NN NNNNNNN--- 5881 --nnn----- -------~|| ||| // LOCUS S.intest.1 5903 bp RNA RNA 11-JAN-191 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: L19567 LOCUS SEJSSRR 1283 bp ss-rRNA RNA 16-JUN-1993 DEFINITION Septata intestinalis small subunit ribosomal RNA sequence. ACCESSION L19567 KEYWORDS small subunit ribosomal RNA. SOURCE Septata intestinalis (strain kt1) rRNA. ORGANISM Septata intestinalis Eukaryota; Animalia; Protozoa; Microspora; Haplophasea; Glugeida; Encephalitozoonidae. REFERENCE 1 (bases 1 to 1283) AUTHORS Zhu,X., Wittner,M., Tanowitz,H.B., Cali,A. and Weiss,L.M. TITLE Small subunit rRNA sequence of septata intestinalis JOURNAL Unpublished (1993) STANDARD full automatic FEATURES Location/Qualifiers source 1..1283 /organism="Septata intestinalis" /strain="kt1" /sequenced_mol="rRNA" BASE COUNT 321 a 218 c 430 g 314 t ORIGIN BASE COUNT 321 a 218 c 430 g 314 t 4620 others ORIGIN 1 |~~~~~~~~~ ~~~~~NNNNN GGU(UGA)UU CU|GCCUGA- C-GU-G-GAU --GCUAUUCU 61 CUGG|-GACU AA-GCCAUGC A-UGU---UG AU|------- |-------(- ---)[----- 121 ---------- ---------- ---gaa-cc- ---------- --uug-ugg- gga]------ 181 -----|---U UG|A-CGGA- CGGCU-CAGU GAUA-GUAC- GAU-GAUU-- ----UGGUUG 241 GCGG<----- ---------- ---------- ---------- ---------- ---------- 301 g>agagcu-G UAACUGCGG( -G-UAAA)CU GCAGg-uagg gggc------ ----(----) 361 ---------- -------(-- --)--|---- -- -CAGCCAAGU -AA|GUGUUA GG|--CCU-A UCA--GCUG- --GUUGUUA- 1141 GG(-GUAAUG G)CCU-AACU A-|-GCGG-A GAC|GGGA-G A-CGGG|GA- -U-(CGGG-) 1201 GUU-U-AUU- CCG|GAGAGG --AGC(CU-G AGAGAUG)GC UACU-ACGUC (CAA--)GAU 1261 -GGCAGC-A- ---------| GGC-GC-GA- AACUU-GCCU -AAUCC---( --uuug--)- 1321 -GGG-A--GC -|G|GUUAUG AGAA-GU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 -----<---- ---------- ---------- ---------- ---------- ------gagu 1501 ---uuuuu-- -ucg---agu -----guaaa --------gg ag-cga---g auu-->GAUU 1561 GGAG|GG-CA A-G--C-GGG U-G(CCA-GC -AGCC|GC-G GU-AA)UACC UG-|CUCCAA 1621 U-AGUGUC|U AUGGU--GAA UGCUG-CAG| UUA--AAAAG UCCGUAGUCU |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ------uugu 2821 -augucuuug -uu-uggggg auuauguccu gauguggaug u-aagagguu ug--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GCAg|aGga ---------- 3001 --CGAGGGGC AC|--CGGAU AGUUGGG-CG -AGGG(GU-G AAA---)UAC G-AAGA-C-C 3061 CUGAC-UGG- A-CGGACA-G AAGC(GAAAG )--GC|U--- GUGCUC-UU| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------ACU ---UAUGUGA -CGA-U|GA- A-GGACGAAG 3301 GCUAGAGGA- UCGAAAUCG( A-UA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -UUUAG|UUC UA--GCA-GU AAACGAUGCC GAC|UG|--- 3421 ---acgggac u--------- ----(----- auau-----) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- -----agugu -u-gugc--- ---------- ----auGA(- 3661 GAAA-)UCUU -GAGUAU-gu gGGU|-U|C- UGGGGAUAGU AU--GC-UU( --GCAA-)GA 3721 GUG-AAACUU -GAAG--AAA -UUG|AC-GG -AA-GAACA- -CCAC-AAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --A-GU|-GG 4021 AUUGUGCG|G CU-UAAUUUG (ACUCAA-CG )CGGG--GCA ACUUACCGGU UC[uga-agc 4081 -gggcag-ga ga-------- -ac(--gagg ---)------ acgg------ --g-aug-cg 4141 gcgcgg---- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|CG-GU- GGU-G-CAUG |GCC|GU-UU GAA|AUGGA- U|GCC(-GUG 4261 AA)GCU-UU- -GGA(UU-AA GU)UGCGUA- AG-AUGUGAG ACCCU-UU|- ---------- 4321 ------(--- --)[------ ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- ---------- ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- --------]- --|------- ---------- GACA-GUG-C -U-C(----- 5041 ---uuug-)G GGCA-A-GGG AGGA-AUGGA ACAGAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CCG-UU A|UGCC|CU- 5221 G-AGA-UGAA UGCG-GCGGC A-CGCGCACU ACGAU--A-g auggcg---- ---------- 5281 ---(-aggga ----)[---- ---------- ---------- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- ---------- ---------- 5401 ---------- ---(-----) ---------- ---------- ------]--- ---------- 5461 ------gccu gac-u----- -GUG-A-GGG AUGAAGCUG( UGUAA--U)G GGCUUCUG-A 5521 ACGUGG-AAU U--CCUAGUA AU-AAC-GAU (-UGAACAA- )GUUGU-U-U -UGAAUGGG- 5581 U-CCCUGUCC UU|UGUA-CA CACCGCCCGU CGCUAU-C-U AA-GAU---G AC-GCAG--- 5641 uggaacgaa- -gauu----- ---------- ---------- ---------- ---------- 5701 -------(gg aa----)--- ---------- ---------- ---------- ---------- 5761 ---------- ------|gg- -ucugagucc u--ucg-u-g uUAG-AUAAG AU-AUAA-G- 5821 UCGUAACAUG GC-------- -----U-G-C UGUUGG(AGA A)CCAGCAGC AGGAUCA--- 5881 --gua----- -------~|| ||| // LOCUS S.intest.2 5903 bp RNA RNA 11-JAN-191 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: U09929 LOCUS SIU09929 1295 bp DNA INV 09-JUN-1994 DEFINITION Septata intestinalis CDC:V297 small subunit ribosomal RNA gene. ACCESSION U09929 KEYWORDS . SOURCE Septata intestinalis ORGANISM Septata intestinalis Eukaryotae; Hypochondria; Microspora; Haplophasea; Glugeida; Encephalitozoonidae; Septata. REFERENCE 1 (bases 1 to 1295) AUTHORS Da Silva,A.J., Slemenda,S.B., Visvesvara,G.S. and Pieniazek,N.J. TITLE Small Subunit rRNA Sequence of Septata intestinalis CDC:V297 (Microsporida) JOURNAL Unpublished STANDARD full automatic REFERENCE 2 (bases 1 to 1295) AUTHORS Pieniazek,N.J. TITLE Direct Submission JOURNAL Submitted (20-MAY-1994) Pieniazek N. J., Centers for Disease Control, Division of Parasitic Diseases, 4770 Buford Highway NE, Atlanta, GA 30341-3724, USA STANDARD full automatic COMMENT NCBI gi: 497943 FEATURES Location/Qualifiers rRNA 1..1295 /product="small subunit ribosomal RNA" primer_bind 1..21 /note="PCR primer based on V. necatrix SSU-rRNA, putative" primer_bind complement(1269..1295) /note="PCR primer based on V. necatrix SSU-rRNA, putative" source 1..1295 /strain="CDC:V297" /organism="Septata intestinalis" BASE COUNT 319 a 220 c 441 g 315 t ORIGIN BASE COUNT 319 a 220 c 441 g 315 t 4608 others ORIGIN 1 |~~~~~~~~~ ~~~~~CACCA GGU(UGA)UU CU|GCCUGA- C-GU-G-GAU --GCUAUUCU 61 CUGG|-GACU AA-GCCAUGC A-UGU---UG AU|------- |-------(- ---)[----- 121 ---------- ---------- ---gaa-cc- ---------- --uug-uggg gga]------ 181 -----|---U UG|A-CGGA- CGGCU-CAGU GAUA-GUAC- GAU-GAUU-- ----UGGUUG 241 GCGG<----- ---------- ---------- ---------- ---------- ---------- 301 g>agagcu-G UAACUGCGG( -G-A-AA)CU GCAGg-uagg gggc------ ----(----) 361 ---------- -------(-- --)--|---- -- CGAGCCAAGU -AA|GUUGUA GG|--CCU-A UCA--GCUG- --GUAGUUA- 1141 GG(-GUAAUG G)CCU-AACU A-|GGCGG-A GAC|GGGA-G A-CGGG|GGA -U-(CGGG-) 1201 GUU-UGAUU- CCG|GAGAGG G-AGC(CU-G AGAGAUG)GC UACU-ACGUC (CAAG-)GAU 1261 -GGCAGC-A- ---------| GGC-GC-GA- AACUU-GCCU -AAUCC---( --uuug--)- 1321 -GGG-A-GGC -|G|GUUAUG AGAA-GU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 -----<---- ---------- ---------- ---------- ---------- ------gagu 1501 ---uuuuu-- -ucg---agu -----guaaa --------gg agucga---g auu-->GAUU 1561 GGAG|GG-CA A-GU-C-GGG U-G(CCA-GC -AGCC|GC-G GU-AA)UACC UG-|CUCCAA 1621 U-AGUGUC|U AUGGU--GAA UGCUG-CAG| UUA--AAAAG UCCGUAGUCU |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- -----uuugu 2821 -augucuuug -uu-uggggg auuauguccu gauguggaug u-aagagguu ug--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GCAg|aGga ---------- 3001 --CGAGGGGC AC|--CGGAU AGUUGGG-CG -AGGG(GU-G AAA---)UAC G-AAGA-C-C 3061 CUGAC-UGG- A-CGGACA-G AAGC(-GAAG )--GC|U--- GUGCUC-UU| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------ACU ---UAUGUGA -CGA-U|GA- A-GGACGAAG 3301 GCUAGAGGA- UCGAAAUCG( AUUA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -UUUAG|UUC UA--GCA-GU AAACGAUGCC GAC|UG|--- 3421 --gacgggac u--------- ----(----- auau-----) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- -----agugu -u-gugc--- ---------- ----auGA(- 3661 GAAA-)UCUU -GAGUAU-gu gGGU|-U|C- UGGGGAUAGU AU--GC-UC( --GCAA-)GA 3721 GUG-AAACUU -GAAG--AGA -UUG|AC-GG -AA-GGACA- -CCAC-AAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --A-GU|-GG 4021 AGUGUGCG|G CU-UAAUUUG (ACUCAA-CG )CGGG--GCA ACUUACCGGU UC[uga-agc 4081 -gggcag-ga ga-------- -ac(--gagg ---)------ acgg------ --g-aug--c 4141 gcgcgg---- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|CG-GU- GGU-G-CAUG |GCC|GU-UU GAA|AUGGA- U|GGC(-GUG 4261 A-)GCU-UU- -GGA(UU-AA GU)UGCGUA- AG-AUGUGAG ACCCU-UU|- ---------- 4321 ------(--- --)[------ ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- ---------- ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- --------]- --|------- ---------- GACA-GUG-C -U-C(----- 5041 ---uuug-)G GGCA-A-GGG AGGA-AUGGA ACAGAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CCG-UU A|UGCC|CU- 5221 G-AGA-UGAA GCGG-GCGGC A-CGCGCACU ACGAU--A-g auggcg---- ---------- 5281 ---(-aggga ----)[---- ---------- ---------- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- ---------- ---------- 5401 ---------- ---(-----) ---------- ---------- ------]--- ---------- 5461 ------gccu g-c-u----- -GUG-A-GGG AUGAAGCUG( UGUAA--U)G GGCUUCUG-A 5521 ACGUGG-AAU U--CCUAGUA AU-AAC-GAU (-UGAACAA- )GUUGU-U-U -UGAAUGGG- 5581 U-CCCUGUCC UU|UGUA-CA CACCGCCCGU CGCUAU-C-U AA-GAU---G AC-gcAG--- 5641 ugg-acgaa- -gauu----- ---------- ---------- ---------- ---------- 5701 -------(gg aa----)--- ---------- ---------- ---------- ---------- 5761 ---------- ------|gg- -ucugagucc u--ucg-u-g uUAG-AUAAG AU-AUAA-G- 5821 UCGUAACAUG GC-------- -----U-G-C UGUUGG(AGA A)CCAUUAGC AGGAUCA--- 5881 --uaa----- -------~|| ||| // LOCUS S.intest.3 5903 bp RNA RNA 11-JAN-191 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: L39113 LOCUS SEJRGOA 1299 bp DNA INV 24-AUG-1995 DEFINITION Septata intestinalis small subunit ribosomal RNA gene. ACCESSION L39113 KEYWORDS PCR primer; small subunit ribosomal RNA. SOURCE Septata intestinalis DNA. ORGANISM Septata intestinalis Eukaryotae; Microsporidia; Haplophasea; Glugeida; Encephalitozoonidae; Septata. REFERENCE 1 (bases 1 to 1299) AUTHORS Baker,M.D., Vossbrinck,C.R., Didier,E.S. and Shadduck,J.A. TITLE Small subunit ribosomal DNA phylogeny of various microsporidia with emphasis on AIDS related forms JOURNAL J. Eukaryot. Microbiol. (1995) In press COMMENT NCBI gi: 954764 FEATURES Location/Qualifiers source 1..1299 /organism="Septata intestinalis" /sequenced_mol="DNA" rRNA 1..1299 /note="putative" /product="small subunit ribosomal RNA" primer_bind 1..18 /note="based on small subunit ribosomal RNA of Vairimorpha necatrix; PCR primer binding site; putative" BASE COUNT 318 a 222 c 443 g 316 t ORIGIN BASE COUNT 318 a 222 c 443 g 316 t 4604 others ORIGIN 1 |~~~~~~~~~ ~~~~~CACCA GGU(UGA)UU CU|GCCUGA- C-GU-G-GAU --GCUAUUCU 61 CUGG|-GACU AA-GCCAUGC A-UGU---UG AU|------- |-------(- ---)[----- 121 ---------- ---------- ---gaa-cc- ---------- --uug-uggg gga]------ 181 -----|---U UG|A-CGGA- CGGCU-CAGU GAUA-GUAC- GAU-GAUU-- ----UGGUUG 241 GCGG<----- ---------- ---------- ---------- ---------- ---------- 301 g>agagcu-G UAACUGCgg( -G-A-AA)CU GCAGg-uagg gggc------ ----(----) 361 ---------- -------(-- --)--|---- -- -GAGCCAAGU -AA|GUUGUA GG|--CCU-A UCA--GCUG- --GUAGUUA- 1141 GG(-GUAAUG G)CCU-AACU A-|GGCGG-A GAC|GGGA-G A-CGGG|GGA -U-(CGGG-) 1201 GUU-UGAUU- CCG|GAGAGG G-AGC(CU-G AGAGAUG)GC UACU-ACGUC (CAAG-)GAU 1261 -GGCAGC-A- ---------| GGC-GC-GA- AACUU-GCCU -AAUCC---( --uuug--)- 1321 -GGG-A-GGC -|G|GUUAUG AGAA-GU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 -----<---- ---------- ---------- ---------- ---------- ------gagu 1501 ---uuuuu-- -ucg---agu -----guaaa --------gg agucga---g auu-->GAUU 1561 GGAG|GG-CA A-GU-C-GGG U-G(CCA-GC -AGCC|GC-C GU-AA)UACC UG-|CUCCAA 1621 U-AGUGUC|U AUGGU--GAA UGCUG-CAG| UUA--AAAAG UCCGUAGUCU |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- -----uuugu 2821 -augucuuug -uu-uggggg auuauguccu gauguggaug u-aagagguu ug--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GCAg|aGga ---------- 3001 --CGAGGGGC AC|--CGGAU AGUUGGG-CG -AGGG(GU-G AAA---)UAC G-AAGA-C-C 3061 CUGAC-UGG- A-CGGACA-G AAGC(-GAAG )--GC|U--- GUGCUC-UU| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------ACU ---UAUGUGA -CGA-U|GA- A-GGACGAAG 3301 GCUAGAGGA- UCGAAAUCG( AUUA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -UUUAG|UUC UA--GCA-GU AAACGAUGCC GAC|UG|--- 3421 --gacgggac u--------- ----(----- auau-----) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- -----agugu -u-gugc--- ---------- ----auGA(- 3661 GAAA-)UCUU -GAGUAU-GU GGGU|-U|C- UGGGGAUAGU AU--GC-UC( --GCAA-)GA 3721 GUG-AAACUU -GAAG--AGA -UUG|AC-GG -AA-GGACA- -CCAC-AAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --A-GU|-GG 4021 AGUGUGCG|G CU-UAAUUUG (ACUCAA-CG )CGGG--GCA ACUUACCGGU UC[uga-agc 4081 -gggcag-ga ga-------- -ac(--gagg ---)------ acgg------ --g-aug--c 4141 gcgcgg---- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|CG-GU- GGU-G-CAUG |GCC|GU-UU GAA|AUGGA- U|GGC(-GUG 4261 A-)GCU-UU- -GGA(UU-AA GU)UGCGUA- AG-AUGUGAG ACCCU-UU|- ---------- 4321 ------(--- --)[------ ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- ---------- ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- --------]- --|------- ---------- GACA-GUG-C -U-C(----- 5041 ---UUUG-)G GGCA-A-GGG AGGA-AUGGA ACAGAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CCG-UU A|UGCC|CU- 5221 G-AGA-UGAA GCGG-GCGGC A-CGCGCACU ACGAU--a-g auggcg---- ---------- 5281 ---(-aggga ----)[---- ---------- ---------- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- ---------- ---------- 5401 ---------- ---(-----) ---------- ---------- ------]--- ---------- 5461 ------gccu g-c-u----- -GUG-A-GGG AUGAAGCUG( UGUAA--U)G GGCUUCUG-A 5521 ACGUGG-AAU U--CCUAGUA AU-AAC-GAU (-UGAACAA- )GUUGU-U-U -UGAAUGGG- 5581 U-CCCUGUCC UU|UGUA-CA CACCGCCCGU CGCUAU-C-U AA-GAU---G AC-GCAG--- 5641 ugg-acgaa- -gauu----- ---------- ---------- ---------- ---------- 5701 -------(gg aa----)--- ---------- ---------- ---------- ---------- 5761 ---------- ------|gg- -ucugagucc u--ucg-u-g uUAG-AUAAG AU-AUAA-G- 5821 UCGUAACAUG GC-------- -----U-G-C UGUUGG(AGA A)CCAGCAGC AGGAUCA--- 5881 -guauuug-- -------~|| ||| // LOCUS Thel.solen 5903 bp RNA RNA 11-JAN-191 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: AF031538 BASE COUNT 414 a 225 c 346 g 387 t 4531 others ORIGIN 1 |~~~~~~~~g aauucCACCA GGU(UGA)UU CU|GCCUGG- U-AU-G-UGU --GCUAGCGU 61 CAAG|-GAUU UA-GCCAUGC A-UGC---UU AC|------- |-------(- ---)[----- 121 ---------- ---------- ---gaaccc- ---------- -acgu--ggg -ga]------ 181 -----|---G UG|G-CGGA- UAGCU-CAGU AAUA-CAGU- UAU-AACA-- ----UAAUCU 241 ACAU<----- ---------- ---------- ---------- ---------- ---------- 301 ->aaaugg-A UAACCUUGU( -C-A-AG)AU AAGGC-UAA- UACagu---- ----(----) 361 ---------- -------(-- --)--|---- -- -UUGUAGGAU -UG|GUUUCU GA|--CCU-A UCA--GUUA- --GUAUGUU- 1141 UU(-GUAAGG G)AGA-ACAU A-|GACUA-U GAC|GGGU-A A-CGGG|GGA -U-(GCAC-) 1201 GUC-UGAUA- CCG|GAGAGG A-AGC(CU-U AGAAACC)GC UUUC-ACGUC (CAAG-)GAU 1261 -GGCAGC-A- ---------| GGC-GC-GA- AACUU-ACCC -AAUUAU-U( -guauu--)G 1321 AUAG-A-GGU -|A|GUUAUG ACGC-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 -----<---- ---------g uuaa-----g auu---uuaa au-------- ---------- 1501 ----ugaa-a -cu----uca -----uuaaa ---------- -gauggu-ua a-gc->GACU 1561 GGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCCAG 1621 U-AGUGCA|U AUACA----- UGCUG-UAG| UUA--GAAAG UUUGUAGCCA |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- guuuauggau uguuuuugau 2821 -aauaguuau -uc-uccaaa agagcuaauu uuaacuaauu c-auaaaaau a---->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GAAg|cGga ---------- 3001 --UGAAGGUA AU|--UGUAU UCACCAG-CA -AGAG(GU-A AAA---)UUU G-AUGA-C-C 3061 UGGUG-AGG- A-CAUUCC-G AGGC(-GAAA )--GC|G--- AUUGCC-UA| GU-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------ACG ---UUUUUGA -UGG-U|AA- A-GAACGUAA 3301 GCCGGAGGA- UCAAAGAUG( AUUA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -UGUAG|UUC CG--GCC-GU AAAUUAUGCC AAC|uu|--- 3421 --gcauc-uu gu-------- ----(----u auuuau---) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---a-caa-g -g-agca--- ---------- ----uAGA(- 3661 GAAA-)UUAA -GAGUUU-UU GGGC|-U|C- UAGGGAUAGU AA--UC-CG( --GCAA-)CG 3721 GAC-AAACUU -AAAG--AAA -UUG|GC-GG -AA-GGACA- -CCAC-AAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --A-GU|-GG 4021 AUUAUACG|G CU-UAAUUUG (ACUCAA-CG )CGGG--AAA ACUUACCAGG GC[c----ua 4081 ugua-uaaga ga-aaguuaa cau(--ugu- ---)------ auguauacuu -gauugu--a 4141 cu--uu---- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|GA-GU- GGU-G-CAUG |GCC|GU-UU UCA|ACACG- U|GGG(-GUG 4261 A-)CUU-GU- caGG(UU-UA UU)CCGGUA- AC-GUGUGAU GUGCA-GU|- ---------- 4321 ------(--- --)[augcaa c--------- ---------- -------uaa cuaa-u---- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- ---------- ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- -guuguga]- --|------- ---------- GACU-UCU-U -G-C(----- 5041 --GGUAA-)G CUUG-A-UGA AGAG---GCG CUAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CAG-UG A|UGCC|CU- 5221 U-AGA-UGUU CUGG-GCUGC A-CGUGUAAU ACAGU--G-g guauuucaau auuu------ 5281 ---(-aauag ----)[---- ---------- ---------- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- ---------- ---------- 5401 ---------- ---(-----) ---------- ---------- ------]--- -------aag 5461 ua--aauuua c-c-c----g aGAC-A-GGG AUCAUGCUU( UGUAA--G)A AGCUUGUG-A 5521 ACAUGG-AAU U--CCUAGUA AU-CGC-UGC (-UCACUAA- )GUAAC-G-A -UGAAUAAG- 5581 U-CCCUGUUC UU|UGCA-CA CACCGCCCGU CGCUAU-C-U GA-GAU---G GA-UGAC--- 5641 uuu-auaaa- -gaugcugcu ---------- ---------- ---------- ---------- 5701 -------(gu ga----)--- ---------- ---------- ---------- ---------- 5761 ---------- agagg-|ca- -UUUGUGUAA G--GUC-A-A CUAG-AUUAG AU-AUAA-G- 5821 UCGUAACAAG GU-------- -----N-N-N NNNNNN(NNN N)NNNNNNNN NNNNNNN--- 5881 ---------- -------~|| ||| // LOCUS Thel.sp.ar 5903 bp RNA RNA 11-JAN-191 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: AF031537 BASE COUNT 351 a 175 c 289 g 315 t 4773 others ORIGIN 1 |~~~~~~~~~ ~~~~~NNNNN NNN(NNN)NN NN|NNNNNN- N-NN-N-NNN --NNNNNNNN 61 NNNN|-NNNN NN-NNNNNNN N-NNN---NN NC|------- |-------(- ---)[----- 121 ---------- ---------- ---gaaccc- ---------- -augu--ggg -ga]------ 181 -----|---G UG|G-CGGA- UAGCU-CAGU AAUA-CAGU- UAU-AACA-- ----UAAUCU 241 ACAU<----- ---------- ---------- ---------- ---------- ---------- 301 ->aaaugg-A UAACCUUGU( -C-A-AG)AU AAGGC-UAA- UACagu---- ----(----) 361 ---------- -------(-- --)--|---- -- -AUGUAGCGU -UG|GUUUCU GA|--CCU-A UCA--GUUA- --GUAUGUU- 1141 UU(-GUAAGG G)AGA-ACAU A-|GACUA-U GAC|GGGU-A A-CGGG|GGA -U-(GCAC-) 1201 GUC-UGAUA- CCG|GAGAGG A-AGC(CU-U AGAAACC)GC UUUC-ACGUC (CAAG-)GAU 1261 -GGCAGC-A- ---------| GGC-GC-GA- AACUU-ACCC -AAUUAU-U( -guauu--)G 1321 AUAG-A-GGU -|A|GUUAUG ACGC-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 -----<---- ---------g uuaa-----g auu---uuaa au-------- ---------- 1501 ----ugaa-a -cu----uca -----uuaaa ---------- -gauaga-ua a-gc->GACU 1561 GGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCCAG 1621 U-AGUGCA|U AUaca----- UGCUG-UAG| UUA--GAAAG UUUGUAGCCA |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- guuuauggau uguuuuugau 2821 -aauaguuau -uc-uccaaa agagcuaauu uuaacuaauu c-auaaaaau a---->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GAAg|cGga ---------- 3001 --UGAAGGUA AU|--UGUAU UCACCAG-CA -AGAG(GU-A AAA---)UUU G-AUGA-C-C 3061 UGGUG-AGG- A-CAUUCA-G AGGC(-GAAA )--GC|G--- AUUGCC-UA| GU-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------ACA ---UUUUUGA -UGG-U|AA- A-GAACGUAA 3301 GCCGGAGGA- UCAAAGAUG( AUUA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -UGUAG|UUC CG--GCC-GU AAAUUAUGCC AAC|uu|--- 3421 --gcauu-uu gu-------- ----(----u auuuau---) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---a-caa-g -g-agca--- ---------- ----uAGA(- 3661 GAAA-)UUAA -GAGUUU-UU GGGC|-U|C- UAGGGAUAGU AA--UC-CG( --GCAA-)CG 3721 GAC-AAACUU -AAAG--AAA -UUG|GC-GG -AA-GGACA- -CCAC-AAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --A-GU|-GG 4021 AUUAUACG|G CU-UAAUUUG (ACUCAA-CG )CGGG--AAA ACUUACCAGG GC[c----ua 4081 ugua-uaaga ga-aaguuaa cau(--ugu- ---)------ auguauacuu -gauugu--a 4141 cu--uu---- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|GA-GU- GGU-G-CAUG |GCC|GU-UU UCA|ACACG- U|GGG(-GUG 4261 A-)CUU-GU- caGG(UU-UA UU)CCGGUA- AC-GUGUGAU GUGCA-GU|- ---------- 4321 ------(--- --)[augcaa c--------- ---------- ---------u aau------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- ---------- ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- -guuguga]- --|------- ---------- GACU-UCU-U -G-C(----- 5041 --GGUAA-)G CUUG-A-UGA AGAG---GCG CUAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CAG-UG A|UGCC|CU- 5221 U-AGA-UGUU CUGG-GCUGC A-CGUGUAAU ACAGU--g-g guauuucaau auuu------ 5281 ---(-aauag ----)[---- ---------- ---------- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- ---------- ---------- 5401 ---------- ---(-----) ---------- ---------- ------]--- -------gag 5461 ua--aauuua c-c-c----g agaC-A-GGG AUCAUGCUU( UGUAA--G)A AGNNNNNN-N 5521 NNNNNN-NNN N--NNNNNNN NN-NNN-NNN (-NNNNNNN- )NNNNN-N-N -NNNNNNNN- 5581 N-NNNNNNNN NN|NNNN-NN NNNNNNNNNN NNNNNN-N-N NN-NNN---N NN-NNNN--- 5641 nnn-nnnn-- nnnnnnn--- ---------- ---------- ---------- ---------- 5701 -------(NN NN----)--- ---------- ---------- ---------- ---------- 5761 ---------- ---NN-|NN- -NNNNNNNNN N--NNN-N-N Nnnn-NNNNN NN-NNNN-N- 5821 NNNNNNNNNN NN-------- -----N-N-N NNNNNN(NNN N)NNNNNNNN NNNNNNN--- 5881 --nnn----- -------~|| ||| // LOCUS Ple.anguil 5903 bp RNA RNA 11-JAN-191 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: U47052 LOCUS PAU47052 1183 bp rRNA INV 19-FEB-1996 DEFINITION Pleistophora anguillarum small subunit rRNA. ACCESSION U47052 NID g1197556 KEYWORDS . SOURCE Pleistophora anguillarum. ORGANISM Pleistophora anguillarum Eukaryotae; Microsporidia; Microsporea; Microsporida; Pansporablastina; Pleistophoridae; Pleistophora. REFERENCE 1 (bases 1 to 1183) AUTHORS Hung,H.-W., Lo,C., Tseng,C., Peng,S., Chou,C. and Kou,G. TITLE Small subunit ribosomal RNA gene sequences of Pleistophora anguillarum: phylogenetic construction and PCR primers for its detection JOURNAL Unpublished REFERENCE 2 (bases 1 to 1183) AUTHORS Hung,H.-W. TITLE Direct Submission JOURNAL Submitted (25-JAN-1996) Hsu-Wei Hung, National Taiwan University, Zoology, Taipei, Taiwan, 106, ROC COMMENT NCBI gi: 1197556 FEATURES Location/Qualifiers source 1..1183 /organism="Pleistophora anguillarum" /specific_host="Japanese eel (Anguilla japonica)" rRNA 1..1183 /product="small subunit rRNA" BASE COUNT 317 a 231 c 411 g 224 t ORIGIN BASE COUNT 317 a 231 c 411 g 224 t 4720 others ORIGIN 1 |--------- -----NNNCA GGU(UGA)UU CU|GCCUGA- C-GU-G-GAC --GCUAGUUC 61 AUA-|-GGUU AA-GCCAUGC A-UGU---GU AG|------- |-------(- ---)[----- 121 ---------- ---------- ---gcgaca- ---------- -guuu--ugu gga]------ 181 -----|---G CG|G-CGGA- AGGCU-CAGU AACG-GGCG- -UC-UAUU-- ----UGAUCU 241 UCUG<----- ---------- ---------- ---------- ---------- ---------- 301 ->agacgg-A CAACCUCUG( -U-A-AC)CG GAGCC-aau- a-cguc---- ----(----) 361 ---------- -------(-- --)--|---- --<--agagg -------cac gguuacccug 421 uggcggu|gg cgugcgaaag ---------- cauugcg--- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ------|--- ---------- ---------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 ---------- ---------- ---------- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- ---------- ---------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 ---------- ---------- ---------- ---------- ---------- ---------- 1021 -|-------- ---------- ---------- ---------- ---------- ---------- 1081 ---------> -CGGAAGAGU -AA|GGAGCC AU|--CCC-A UCA--GUUA- --GUAAGUA- 1141 GG(-GUAAGG G)CCU-ACUU A-|GACGA-A GAC|GGGU-A --CGGG|GAA -U-(UGUG-) 1201 GUU-UGAUU- CCG|GAGAGG G-AGC(CU-G AGAGACG)GC UACC-AGGUC (CAAG-)GAC 1261 -AGCAGC-A- ---------| GGC-GC-GA- AAAUU-ACCG -AAGCC---( --uccg--)- 1321 GUGA-G-GGC -|G|GUAGUA AGGA-GA--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 -----<---- ---------- ---------- ---------- ---------- ---cguggaa 1501 ---acgau-- -gag---gag -----guaaa --------ga augcuc---u ggu-->AACA 1561 GGAG|Gu-CA A-GA-C-UGG U-G(CCA-GC -AUCC|GC-G -U-AA)UACC AG-|CUCCUG 1621 G-AGUGUC|U AUGAU--GAU UGCUG-CAG| UUA--AAGAG UUCGUAGUCG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- --ggcugcgu gacuggcgug 2821 -aaaggcu-u -cu-uucaag gggggcacag cgcggggaaa g-cagaggau aa--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGAg|cGuU ---------- 3001 --UUGGGGCC AG|--GUUAU UAAGCGA-CG -AGAG(GU-G AAA---)UUU G-AUGA-C-U 3061 CGCUU-AGG- A-GGAACA-G AGGC(-GAAA )--GC|---- CUGGCC-AG| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- --------Cg ---AAUCCGA -UGA-U|AA- A-GGACGUAG 3301 GCUAGAGGA- UCGAAGACG( AUUA------ ---------- ---------- ---------- 3361 ---------- GAGAC)CG-U -UGUAG|UUC UA--GCA-GU AAACGAUGCC GAU|GC|--- 3421 --cgug-gug c--------- ----(----- gug------) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- -----gcga- -c-gcgg--- ---------- ----agGA(- 3661 GAAA-)UU-- -GAGUAG--- -GGC|-C|C- UGGGGAGAGU AC--AC-G-( --GCAA-)GC 3721 GAG-AAAUUU -AAAG-GAAA -UUG|AC-GG -AA-GAACA- -CCAC-AAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --A-GU|-GG 4021 AGUGUGCG|G CU-UAAUUUG (ACUCAA-CG )CGGG--ACA GCUUACCAGG CC[cga---- 4081 -cgaccgcac ga-------g ugu(---ugu ---)-----a cacga----- ua---gg--u 4141 cg--aa---- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|GA-GU- GGU-G-CAUG |GCC|GU-UA ACG|ACAAG- U|GGG(-GUG 4261 A-)CCU-UU- -GGG(UU-AA GU)CCGGGA- AG-UAGUGAG ACCCC-UG|- ---------- 4321 ------(--- --)[ccuguc c--------- ---------- ---------g gc-------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- ---------- ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- -ggacag-]- --|------- ---------- GACA-GGU-G -C-U(----- 5041 ---caa--)A GCAC-A-GGA AGGA-AGGGU CAAGAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CAG-UG A|UGCC|CU- 5221 U-AGA-UGGC GUGG-GCUGC A-CGCGCACU ACAGU--g-g ucac-agaaa gaauc----- 5281 ---(-gcgga ----)[---- ---------- ---------- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- ---------- ---------- 5401 ---------- ---(-----) ---------- ---------- ------]--- --------ga 5461 gacaauggug a-u-c----- -GAG-A-GGG AAUGAGCUU( UGCAA--G)A GGCUCAGG-A 5521 ACGAGG-AAU U--GCU-GUA AU-CNN-NNN (-NNNNNNN- )NNNNN-N-N -NNNNNNNN- 5581 N-NNNNNNNN NN|NNNN-NN NNNNNNNNNN NNNNNN-N-N NN-NNN---N NN-NNNN--- 5641 nnn-nnnnn- -nnnn----- ---------- ---------- ---------- ---------- 5701 -------(nn nn----)--- ---------- ---------- ---------- ---------- 5761 ---------- ------|nn- -nnnnnnnnn n--nnn-n-n nNNN-NNNNN NN-NNNN-N- 5821 NNNNNNNNNN NN-------- -----N-N-N NNNNNN(NNN N)NNNNNNNN NNNNNNN--- 5881 --nnn----- -------~|| ||| // LOCUS Pleis.sp.1 5903 bp RNA RNA 11-JAN-191 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: U10342 LOCUS PSU10342 1232 bp DNA INV 22-JUN-1994 DEFINITION Pleistophora sp. ATCC 50040 small subunit rRNA gene. ACCESSION U10342 KEYWORDS . SOURCE Pleistophora sp. ORGANISM Pleistophora sp. Eukaryotae; Hypochondria; Microspora; Microsporea; Microsporida; Pleistophora. REFERENCE 1 (bases 1 to 1232) AUTHORS Da Silva,A.J., Hinkle,G., Slemenda,S.B., Sogin,M.L. and Pieniazek,N.J. TITLE Small subunit rRNA sequence of Pleistophora sp. ATCC 50040 (Microsporida) JOURNAL Unpublished STANDARD full automatic REFERENCE 2 (bases 1 to 1232) AUTHORS Pieniazek,N.J. TITLE Direct Submission JOURNAL Submitted (03-JUN-1994) Norman J. Pieniazek, Division of Parasitic Diseases, Centers for Disease Control, 4770 Buford Highway NE, Atlanta, GA 30341-3724, USA STANDARD full automatic COMMENT NCBI gi: 501116 FEATURES Location/Qualifiers rRNA 1..1232 /product="small subunit rRNA" primer_bind 1..21 /note="PCR primer based on Vairimorpha necatrix SSU-rRNA, putative" primer_bind complement(1209..1232) /note="PCR primer based on Vairimorpha necatrix SSU-rRNA, putative" source 1..1232 /strain="ATCC 50040" /organism="Pleistophora sp." BASE COUNT 351 a 235 c 394 g 252 t ORIGIN BASE COUNT 351 a 235 c 394 g 252 t 4671 others ORIGIN 1 |--------- -----CACCA GGU(UGA)UU CU|GCCUGA- C-GU-A-GAC --GCUAGUCU 61 CUGA|-GAUU AA-GCCAUGC A-UGU---CU AU|------- |-------(- ---)[----- 121 ---------- ---------- ---gaaac-- ---------- ---------- --a]------ 181 -----|---A GG|A-CGAA- CAGCU-CAGU AAAA-CUGC- GAU-GAUU-- ----CAGUCU 241 GUCU<----- ---------- ---------- ---------- ---------- ---------- 301 ->gucaag-A UAACCACGC( -G-A-AA)GU GUGGC-UAA- gagg------ ----(----) 361 ---------- -------(-- --)--|---- --<------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ------|--- ---------- ---------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 ---------- ---------- ---------- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- ---------- ---------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 ---------- ---------- ---------- ---------- ---------- ---------- 1021 -|-------- ---------- ---------- ---------- ---------- ---------- 1081 ---------> -GGACAGAAC -AA|GACGCA GG|--ACU-A UCA--GUUA- --GUUGGUA- 1141 GU(-GUAAUG G)ACU-ACCA A-|GACGG-U GAC|GGUU-G A-CGGG|GAA -U-(GAGG-) 1201 GUU-CUAUA- CCG|GAGAGG G-AGC(CU-G AGAGAUA)GC UCCC-ACGUC (CAAG-)GAC 1261 -GGCAGC-A- ---------| GGC-GC-GA- AAAUU-GCCC -ACugu---- --uugg---- 1321 -agg-A-GGC -|A|GUUAUG AGAC-GU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 -----<---- ---------- ---------- ---------- ---------- ------gaga 1501 ---aagag-- -ugc---uug -----guaaa --------ga gaagca---g gag-->AAUU 1561 GGAG|GG-CA A-GU-U-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)UACC GA-|CUCCAA 1621 G-AGUGUG|U AUGAG--AGA UGCUG-CAG| UUA--AAAAG UCCGUAGUCG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ---------- 2821 ------ugga -ga-cggaaa gagaggcgga gccucuuuga g-augcucug ga--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GAAg|cCaa ---------- 3001 --cagggGGC AC|--AGUAU ACCAGGG-CG -AGAG(AU-G AAA---)UGC C-AAGA-C-C 3061 CCUGG-UGG- A-CUGAGC-G AGGC(-GAAA )--GC|G--- GUGCUC-UU| GU-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------GGG ---UGUUCGG -UGA-U|CA- A-GGACGAAG 3301 GCUGGAGGA- UCGAAAGUG( AUUA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-C -UGUAG|UUC CA--GCA-GU AAAAGAUGCC GAC|AU|--- 3421 --gcuc-ggu g--------- ----(----- gcaa-----) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- -----cacg- -g-ggcg--- ---------- ----ggGA(- 3661 GAAA-)UCUU --AGAGU-UC GGGC|-U|C- UGGGGAUAGU AU--GC-UC( --GCAA-)GG 3721 GUG-AAAAUU -AAAG--AAA -UUG|AC-GG -AG-CUACA- -CCAC-AAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --A-GU|-GG 4021 AUUGUGCG|G CU-UAAUUUG (ACUCAA-CG )CGAG--GAA GCUUACCAGG GC[caa---- 4081 -gug------ ---------c ugu(ggagaa agg-a----g cag------- ---------g 4141 acag------ -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|AA-GU- GGU-G-CAUG |GUC|GU-UG GAA|AUUGA- U|GGG(-AUG 4261 A-)CUU-UG- -GCC(UU-AA AU)GGCUGA- AU-GAGUGAG AUCUU-UG|- ---------- 4321 ------(--- --)[------ ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- ---------- ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- --------]- --|------- ---------- GACA-UGU-U -C-C(----- 5041 ---caca-)G GAAC-A-GGA AGG--GGAGG CUAUAA--CA GAU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CAG-AG A|UGCC|CU- 5221 U-AGA-UGCC CUGG-GCUGC A-CGCGCAAU ACAAU--a-g cacguagacg u--------- 5281 ---(-acaga ----)[---- ---------- ---------- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- ---------- ---------- 5401 ---------- ---(-----) ---------- ---------- ------]--- ---------- 5461 -acaacacgu g-c-u----- -GAG-G-UGG ACUGUGCUC( UGCAA--G)G GGCACACG-A 5521 AAGAGG-AAU U--CCUAGUA AG-CGC-CCA (-UCACCAG- )UGGGC-G-U -UGAAUCAG- 5581 U-CCCUGUAG CU|UGUA-CA CACCGUCCGU CACUAU-C-U CA-GAU---G UU-uuuc--- 5641 ggg-augaa- -gagu----- ---------- ---------- ---------- ---------- 5701 -------(cu ag----)--- ---------- ---------- ---------- ---------- 5761 ---------- ------|gc- -ucugaauaa c--gga-a-a gUAG-AUAAG AU-GUAA-G- 5821 UCGUAACAUG GU-------- -----U-G-C UGUUGG(NNN N)NNNNNNNN NNNNNNN--- 5881 --nnn----- -------~|| ||| // LOCUS Pleis.sp.2 5903 bp RNA RNA 29-MAY-1996 DEFINITION Pleistophora sp.; . ACCESSION D85500 KEYWORDS . SOURCE Pleistophora sp. ORGANISM Pleistophora sp. REFERENCE 1 (bases 1 to 1248) AUTHORS Inoue,T. TITLE Direct Submission JOURNAL Tadashi Inoue, Lab. Nucleic Acid Science,, College of Bioresource Sciences, Nihon Univ.; Kameino 1866, Fujisawa, Kanagawa 252, Japan (E-mail:tinoue@ddbj.nig.ac.jp, Tel :0466-83-2563(ex.401), Fax: 0466-83-2573) Submitted (21-MAY-1996) to the DDBJ/EMBL/GenBank databases. STANDARD No information REFERENCE 2 (sites) AUTHORS Hatakeyama,Y., Kawakami,Y., Iwano,H., Inoue,T. and Ishihara,R. TITLE Comparison of secondary structures of small subunit ribosomal RNA from five microsporidia pathogenic to the silk worm, Bombyx mori JOURNAL Unpublished (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: D85500 BASE COUNT 361 a 242 c 393 g 252 t 4655 others ORIGIN 1 |--------- -----CACCA GGU(UGA)UU CU|GCCUGA- C-GU-A-GAC --GCUAGUCU 61 CUGA|-GAUU AA-GCCAUGC A-UGU---CU AU|------- |-------(- ---)[----- 121 ---------- ---------- ---gaaac-- ---------- ---------- --a]------ 181 -----|---A GG|A-CGAA- CAGCU-CAGU AAAA-CUGC- GAU-GAUU-- ----CAGUCU 241 GUCU<----- ---------- ---------- ---------- ---------- ---------- 301 ->gucaag-A UAACCACGC( -G-A-AA)GU GUGGC-uaag aggg------ ----(----) 361 ---------- -------(-- --)--|---- --<------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ------|--- ---------- ---------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 ---------- ---------- ---------- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- ---------- ---------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 ---------- ---------- ---------- ---------- ---------- ---------- 1021 -|-------- ---------- ---------- ---------- ---------- ---------- 1081 ---------> --GACAGAAC -AA|GACGCA GG|--ACU-A UCA--GUUA- --GUUGGUA- 1141 GU(-GUAAUG G)ACU-ACCA A-|GACGG-U GAC|GGUU-G A-CGGG|GAA -U-(GAGG-) 1201 GUU-CUAUA- CCG|GAGAGG G-AGC(CU-G AGAGAUA)GC UCCC-ACGUC (CAAG-)GAC 1261 -GGCAGC-A- ---------| GGC-GC-GA- AAAUU-GCCC -ACUGU---( --uugg--)- 1321 -AGG-A-GGC -|A|GUUAUG AGAC-GU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 -----<---- ---------- ---------- ---------- ---------- ------gaga 1501 ---aagag-- -ugc---uug -----guaaa --------ga gaagca---g gag-->AAUU 1561 GGAG|GG-CA A-GU-U-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)UACC GA-|CUCCAA 1621 G-AGUGUG|U AUGAG--AGA UGCUG-CAG| UUA--AAAAG UCCGUAGUCG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ---------- 2821 ------ugga -ga-cggaaa gagaggcgga gccucuuuga g-augcucug ga--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GAAG|CCAA ---------- 3001 --CAGGGGGC AC|--AGUAU ACCAGGG-CG -AGAG(AU-G AAA---)UGC C-AAGA-C-C 3061 CCUGG-UGG- A-CUGAGC-G AGGC(-GAAA )--GC|G--- GUGCUC-UU| GU-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------GGG ---UGUUCGG -UGA-U|CA- A-GGACGAAG 3301 GCUGGAGGA- UCGAAAGUG( AUUA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-C -UGUAG|UUC CA--GCA-GU AAAAGAUGCC GAC|AU|--- 3421 --gcuc-ggu g--------- ----(----- gcaa-----) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- -----cacg- -g-ggca--- ---------- ----GGGA(- 3661 GAAA-)UCUU --AGAGU-UC gGGC|-U|C- UGGGGAUAGU AU--GC-UC( --GCAA-)GG 3721 GUG-AAAAUU -AAAG--AAA -UUG|AC-GG -AG-CUACA- -CCAC-AAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --A-GU|-GG 4021 AUUGUGCG|G CU-UAAUUUG (ACUCAAACG )CGAG--GAA GCUUACCAGG GC[caa---- 4081 -gug------ ---------c ugu(ggagaa agg-a----g cag------- ---------g 4141 acag------ -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|AA-GU- GGU-G-CAUG |GUC|GU-UG GAA|AUUGA- U|GGG(-AUG 4261 --)cuu-u-- -gcc(UU-AA AU)-gcugA- AU-GAGUGAG AUCUU-UG|- ---------- 4321 ------(--- --)[------ ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- ---------- ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- --------]- --|------- ---------- GACA-UGU-U -C-C(----- 5041 ---CACA-)G GAAC-A-GGA AGG--GGAGG CUAUAA--CA GAU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CAG-AG A|UGCC|CU- 5221 U-AGA-UGCC CUGG-GCUGC A-CGCGCAAU ACAAU--a-g cacguagacg u--------- 5281 ---(-acaga ----)[---- ---------- ---------- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- ---------- ---------- 5401 ---------- ---(-----) ---------- ---------- ------]--- ---------- 5461 -acaacacgu g-c-u----- -AAG-G-UGG ACUGUGCUC( UGCAA--G)- GGCACACG-A 5521 AAGAGG-AAU U--CCUAGUA AG-CGC-CCA (-UCACCAG- )UGG-C-G-U -UGAAUCAG- 5581 U-CCCUGUAG CU|UGUA-CA CACCGUCCGU CACUAU-C-U CA-GAU---G UU-UUUC--- 5641 ggg-augaa- -gagu----- ---------- ---------- ---------- ---------- 5701 -------(cu ag----)--- ---------- ---------- ---------- ---------- 5761 ---------- ------|gc- -ucugaauaa c--gga-a-a gUAG-AUAAG AU-GUAA-G- 5821 UCGUAACAAG GU-------- -----U-G-C GGUCGG(CGA A)CCAGC-GC A-GAUCA--- 5881 --uua----- -------~|| ||| // LOCUS Vav.oncope 5903 bp RNA RNA 11-JAN-191 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: X74112 LOCUS VOSSRRNA 1452 bp DNA INV 30-JUN-1994 DEFINITION V.oncoperae gene for small subunit rRNA ACCESSION X74112 KEYWORDS ribosomal RNA; small subunit ribosomal RNA. SOURCE Vavraia oncoperae ORGANISM Vavraia oncoperae Eukaryota; Animalia; Protozoa; Microspora; Microsporea; Microsporida; Pansporoblastina; Pleistophoridae. REFERENCE 1 (bases 1 to 1452) AUTHORS Malone,L.A. TITLE Direct Submission JOURNAL Submitted (13-JUL-1993) to the EMBL/GenBank/DDBJ databases. L.A. Malone, Horticulture & Food Research Institute, of NZ Ltd, Mt Albert Res Centre Private Bag 92, 169 Auckland, NEW ZEALAND STANDARD full automatic REFERENCE 3 (bases 1 to 1452) AUTHORS Malone,L.A., Broadwell,A.H., McIvor,C.A., Lindridge,E.T. and Ninham,J. TITLE Ribosomal RNA genes of two of two microsporidian species, Nosema apis and Varaia oncoperae are very variable JOURNAL J. Invertebr. Pathol. 64 (1994) STANDARD full automatic COMMENT NCBI gi: 509404 FEATURES Location/Qualifiers source 1..1452 /organism="Vavraia oncoperae" /isolate="isolated from NZ porina caterpillar (Wiseana spp., Lepidoptera, Hepialidae" /dev_stage="spores" rRNA 1..1452 /product="small subunit RNA" BASE COUNT 369 a 317 c 504 g 262 t ORIGIN BASE COUNT 346 a 283 c 467 g 239 t 4568 others ORIGIN 1 |~~~~~~~~~ ~~~~~ggauc cgu(UGA)UU CU|GCCUGA- C-GU-A-GAU --GCUAGUCU 61 CAUA|-GGUU AA-GCCAUGC A-UGU---GC AA|------- |-------(- ---)[----- 121 ---------- ---------- ---gcgaag- ---------- --cgg-uggu gga]------ 181 -----|---g cg|g-CGCA- AGGCU-CAGU AACG-GGCG- ACU-GAUU-- ----UGAUCU 241 CCCG<----- ---------- ---------- ---------- ---------- ---------- 301 ->gugugg-A CAACCUCUG( -U-A-AC)CG GAGGC-caa- aacac----- ----(----) 361 ---------- -------(-- --)--|---- --<-aggagg cgcgugacac gggcacgggc 421 gugcaaccgg caggug---- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ------|--- ---------- ---------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 ---------- ---------- ---------- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- ---------- ---------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 ---------- ---------- ---------- ---------- ---------- ---------- 1021 -|-------- ---------- ---------- ---------- ---------- ---------- 1081 ---------> -CGGGAGAGU -AA|GGAGCC AU|--CCC-A UCA--GUUA- --GUAAGUA- 1141 GG(-GUAAGG G)CCU-ACUU A-|GACGA-A GAC|GGGU-A --CGGG|GAA -U-(UAGA-) 1201 GUU-CGAUU- CCG|GAGAGG G-AGC(CUUA GAAGACG)GC UACC-AGGUC (CAAG-)GAC 1261 -AGCAGC-A- ---------| GGC-GC-GG- AAAUU-ACCG -AAGCC---- --cgcg---- 1321 uucg-G-GGC -|G|GUAGUA AGGA-GA--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 -----<---- ---------- ---------- ---------- ---------- ---cgugaau 1501 ---acgau-- -gug---cag -----guaaa --------au augcac---u ggu-->AACA 1561 GGAG|GU-CA A-GA-C-UGG U-G(CCA-GC -AUCC|GC-G GU-AA)UACC AG-|CUCCUG 1621 G-GGUGUC|U AUGAU--GAU UGUCG-CAG| UUA--AAGAG UUCGUAGUCG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- --ggcugcau gaccggcgcu 2821 -gaaggcucc -cu-aucgag gggggcaggg cgccggaaaa g-cagaggau ga--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGAg|cGgc ---------- 3001 --cggggGCC AG|--GUUAU UAAGCGA-CG -AGAG(GU-G AAA---)UUU A-AUGA-C-U 3061 CGCUU-AGG- A-GCAGCA-G AGGC(-GAAA )--GC|G--- CUGGCC-AG| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------GCG ---AAUCCGA -UGA-U|AA- A-GGACGUAG 3301 GCUAGAGGA- UCGAAGACG( AUUA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CGgU -UGUAG|UUC UA--GCA-GU AAACGAUGCC GAU|GC|--- 3421 --cgug-ggg c--------- ----(----- ggugca---) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- -----gccag -c-gcg---- ---------- ----agGA(- 3661 GAAA-)UU-- -gagua---- GGGC|-C|C- UGGGGAGAGU AC--AC-GC( --GCAA-)-c 3721 aga-AAUUUA -AAGG--AAA -UUG|AC-GG -AA-GAACA- -CCAC-AAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --A-GU|-GG 4021 AGUGUGCG|G CU-UAAUUUG (ACUCAA-CG )CGGG--ACA GCUUACCAGG CC[cga---- 4081 -cggucgcac ga-------g ugu(---ggu ---)-----a cacga----- ua---gg--c 4141 cg--ga---- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|GA-GU- GGU-G-CAUG |GCC|GU-UA ACG|ACAAG- U|GGG(-GUG 4261 A-)CCU-UU- -GGG(UU-AA GU)CCGGGA- AG-UAGUGAG ACCCC-UG|- ---------- 4321 ------(--- --)[ccg--- ---------- ---------- ---------c gagc------ 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- ---------- ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- -----cgg]- --|------- ---------- GACA-GGU-G -C-U(----- 5041 ---caa--)A GCAC-A-GGA AGGA-AGGGU CAAGAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CAG-UG A|UGCC|CU- 5221 U-AGA-UGGU CUGG-GCUGC A-CGCGCACU ACAGU--g-g ucgc-agaaa uc-------- 5281 ---(agugcc cgag)[c--- ---------- ---------- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- ---------- ---------- 5401 ---------- ---(-----) ---------- ---------- ------]--- ---------- 5461 ggcaauggcg a-u-c----- -GAG-A-GGG AACGAGCUC( UGGAA--G)G GGCUCGGG-A 5521 ACGAGG-AAU U--GCUAGUA AU-CGU-GGG (cucauuaa- )GACAC-G-G -UGAAUACG- 5581 U-CCCUGUUC UU|UGUA-CA CACCGCCCGU CGUUAU-C-G AA-GAU---G GA-GUCA--- 5641 ggc-gcgaa- -caa------ ---------- ---------- ---------- ---------- 5701 -------(gc ga----)--- ---------- ---------- ---------- ---------- 5761 ---------- ------|ga- -ggugagugc a--ggg-u-u cUAG-AUGUG AU-ACAA-G- 5821 UCGUAACAUG GU-------- -----U-G-C UGUCGa(NNN N)NNNNNNNN NNNNNNN--- 5881 ---------- -------~|| ||| // LOCUS (2)-Myxomy 5903 bp RNA RNA 13-JAN-1999 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: DIVIDER BASE COUNT 0 a 0 c 0 g 0 t 5903 others ORIGIN 1 |......... .......... .......... .......... .......... .......... 61 .......... .......... .......... .......... .......... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......... .......... .......... .......... 241 .......... .......... .......... .......... .......... .......... 301 .......... .......... .......... .......... .......... .......... 361 .......... .......... .......... .......... .......... .......... 421 .......... .......... .......... .......... .......... .......... 481 .......... .......... .......... .......... .......... .......... 541 .......... .......... .......... .......... .......... .......... 601 .......... .......... .......... .......... .......... .......... 661 .......... .......... .......... .......... .......... .......... 721 .......... .......... .......... .......... .......... .......... 781 .......... .......... .......... .......... .......... .......... 841 .......... .......... .......... .......... .......... .......... 901 .......... .......... .......... .......... .......... .......... 961 .......... .......... .......... .......... .......... .......... 1021 .......... .......... .......... .......... .......... .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .......... .......... .......... .......... .......... 1201 .......... .......... .......... .......... .......... .......... 1261 .......... .......... .......... .......... .......... .......... 1321 .......... .......... .......... .......... .......... .......... 1381 .......... .......... .......... .......... .......... .......... 1441 .......... .......... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .....>.... 1561 .......... .......... .......... .......... .......... ..-|...... 1621 .......... .......... .......... .......... .......... .......... 1681 .......... .......... .......... .......... .......... .......... 1741 .......... .......... .......... .......... .......... .......... 1801 .......... .......... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .......... .......... 1921 .......... .......... .......... .......... .......... .......... 1981 .......... .......... .......... .......... .......... .......... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... .......... .......... .......... .......... .......... 2161 .......... .......... .......... .......... .......... .......... 2221 .......... .......... .......... .......... .......... .......... 2281 .......... .......... .......... .......... .......... .......... 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... .......... 2701 .......... .......... .......... .......... .......... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... .......... 2881 .......... .......... .......... .......... .......... .......... 2941 .......... .......... .......... .......... .......... .......... 3001 .......... .......... .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .......... .......... 3181 .......... .......... .......... .......... .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .......... .......... .......... 3361 .......... .......... .......... .......... .......... .......... 3421 .......... .......... .......... .......... .......... .......... 3481 .......... .......... .......... .......... .......... .......... 3541 .......... .......... .......... .......... .......... .......... 3601 .......... .......... .......... .......... .......... .......... 3661 .......... .......... .......... .......... .......... .......... 3721 .......... .......... .......... .......... .......... .......... 3781 .......... .......... .......... .......... .......... .......... 3841 .......... .......... .......... .......... .......... .......... 3901 .......... .......... .......... .......... .......... .......... 3961 .......... .......... .......... .......... .......... .......... 4021 .......... .......... .......... .......... .......... .......... 4081 .......... .......... .......... .......... .......... .......... 4141 .......... .]........ .......... .......... .......... .......... 4201 .......... .......... .......... .......... .......... .......... 4261 .......... .......... .......... .......... .......... .......... 4321 .......... .......... .......... .......... .......... .......... 4381 .......... .......... .......... .......... .......... .......... 4441 .......... .......... .......... .......... .......... .......... 4501 .......... .......... .......... .......... .......... .......... 4561 .......... .......... .......... .......... .......... .......... 4621 .......... .......... .......... .......... .......... .......... 4681 .......... .......... .......... .......... .......... .......... 4741 .......... .......... .......... .......... .......... .......... 4801 .......... .......... .......... .......... .......... .......... 4861 .......... .......... .......... .......... .......... .......... 4921 .......... .......... .......... .......... .......... .......... 4981 .......... .......... .......... .......... .......... .......... 5041 .......... .......... .......... .......... .......... .......... 5101 .......... .......... .......... .......... .......... .......... 5161 .......... .......... .......... .......... .......... .......... 5221 .......... .......... .......... .......... .......... .......... 5281 .......... .......... .......... .......... .......... .......... 5341 .......... .......... .......... .......... .......... .......... 5401 .......... .......... .......... .......... .......... .......... 5461 .......... .......... .......... .......... .......... .......... 5521 .......... .......... .......... .-........ .......... .......... 5581 .......... .......... .......... .......... .......... .......... 5641 .......... .......... .......... .......... .......... .......... 5701 .......... .......... .......... .......... .......... .......... 5761 .......... .......... .......... .......... .......... .......... 5821 .......... .......... .......... .......... .......... .......... 5881 .......... ........|| ||| // LOCUS P.polyceph 5903 bp RNA RNA 11-JAN-191 DEFINITION Physarum polycephalu. ACCESSION No information KEYWORDS No information. SOURCE Physarum polycephalu. ORGANISM Physarum polycephalu. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: X13160 LOCUS X13160 1964 bp UNA 15-JUN-1989 DEFINITION Physarum polycephalum rRNA small subunit (SSU rRNA) gene. ACCESSION X13160 REFERENCE 1 (bases 1 to 1964; enum. 1 to 1964) AUTHORS Johansen,T., Johansen,S. and Haugli,F.B. TITLE Nucleotide sequence of the Physarum polycephalum small subunit ribosomal RNA as inferred from the gene sequence: secondary structure and evolutionary implications JOURNAL Curr. Genet. 14, 265-273 (1988) STANDARD unannotated staff_entry BASE COUNT 484 a 462 c 560 g 458 t ORIGIN BASE COUNT 484 a 462 c 560 g 458 t 3939 others ORIGIN 1 |--------- -----UACCU GGU(UGA)UC CU|GCCAGU- A-GU-G-UAU --GCUUCUCC 61 UAAA|-GACU AA-GCCAUGC A-UGUCU-CC GA|------- |--------- ----[----- 121 ---------- --------au agaagagcaa ---------- -gucu-cucu gaa]------ 181 -----|---U CU|G-CGAA- CGGCU-CCGC AUAc-cagu- ugu-aaac-- ----cauagc 241 aagc<----- ---------- -----aagcc gcguuguugc cgcaaggcga cggcgcgguu 301 c>ACAGGG-A UAACCCUGG( -U-AAUU)CU GAGGC-UAA- UACAAG---- ----(----) 361 ---------- -------(-- --)--|---- -- -ucucgcugu -gu|gcuucu ga|--CCU-A UCA--ACUag --aUGGCA-- 1141 gc(-GUAACG G)ACA-UGCC Au|GGUAA-C AAC|GGGU-A --CAGA|GGA -U-(AAGG-) 1201 GUU-CGAUC- CUG|GAGAGU G-GGCC(U-G AGAGAU)UGC UCAC-ACUUC (UAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GC- AACGU-UCCC -AUUGGG-C( ---aaa--)G 1321 CUCG-A-GGG -|C|GUUAGG GGAC-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------au gaaugccu-- --gcc(---- ---uuau)gg u---G-GGCA A-UUCAAAU- 1501 ------GGGA ----CUGUUU -UAAA--CAU C-----CU-A U-CGA-GUAA C---->AAUU 1561 AGAG|GA-CA A-GU-C-UGG U-G(CCA-GC -ACCC|GC-G GU-AA)UUCC AG-|CUCUAA 1621 U-AGCAUA|C GUUAA--AGU UGUUG-CGG| UUA--AAACG CUCGUAGUCG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 gcuccagacc u-ucag-agc cuugau--u- cg-ggacacu ggguca-gcu ---------- 1801 ---------- ------g-c- ucuucu-c-- -caagagcgc gccaac-uac ug-------- 1861 augauagggg a-cgucgguc aaucgugccc ugggcugucu cccccccggg ggagu----- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ------caca gggucguuca gcg------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- -----gucuu 2161 cgcgauc--- ---------- ---------- ---gcgguuc ggcu------ ---------- 2221 ---cggcucg ggguacc--- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- --aaucacca UG-AUUA--A 2461 ACCGUAGUGa cc-aa-AG-C ACGucuuua- ---------- ---------- ---------- 2521 ---------- gacg-g--gc acggca-cag cauggga|cg --aaacg-ca -ccgg---g- 2581 cucg------ ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- --cc|uuuuu 2821 --u-uugcgg -gg-g----- ------cgug acu-cg-GUA A---aagcga aa--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGA|UGUU ---------- 3001 --CGAGGGUG AC|--CGAAU UGCUGGG-CG -AGUG(GU-G AAA---)UAC G-UUGA-C-C 3061 CUAGC-AAG- U-CGACCA-A AGGC(-GUAA )--GC|A--- GUCAUC-AA| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------GCA ---UUCCCGU -UGA-U|CA- A-GAGCGAAA 3301 GUUAAGGGU- UCGAAGACG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CGUAG|UCU UA--ACU-AU AAAUGAUGCA GAC|CA|--- 3421 --gggau-ag gac-a-g-ug uc--(----- caucuc---) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ----gacu-c u--u-ccg-g -a-ccu---- ---------- ----ugGA(- 3661 GAAA-)UCa- -cGAGUcuau gGGU|-U|C- UGGGGGGAGU AU--GG-UC( --GCAA-)GG 3721 CUG-AAACUU -AAAG--GAA -UUG|AC-GG -AA-GGGCA- -CACA-A-AG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --A-GU|-GG 4021 AACCUGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--AAA ACUCACCAGG UC[cgg-aua 4081 cacg-uauga aa-----guc aag(cugaaa g-a)------ cuuua----- cuc-aaug-a 4141 uguaag---- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU-G-CAUG |GUC|GU-UC UUA|GUUCG- U|GGA(-UUG 4261 A-)UUUGUC- -UGG(UU-UA UU)CCGAUA- AC-GAGCGAG ACCCC-GG|- ---------- 4321 ------(--- --)[CGUucC UAAU-AGggg u--ggc-agc cagaccgguc ---------- 4381 ---------- ---------- -------gca a--------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---gac-agg uuagcucgcc accugaag-- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ----uuaug- CU-------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------U CUUAGACG]- --|------- ---------- UAUc-aga-g -c-c(----- 5041 --gauaa-)g guuc-u-uga aa---UGGGU UAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CAG-UC A|UGCC|CU- 5221 U-AGA-UGUU CUGG-GCCGC A-CGCGCGUU ACAAU--G-G CAUGU----- ---------- 5281 ---(------ ----)[aaaa cgagug---- ---------- ---------- ---------- 5341 ---------- ------cuu( gaaca)aggc ---------- ---------- ---------- 5401 -guccca-cg gcc(gaaa-) ggucg----u gguaacccuu -agucc]--- ---------- 5461 --------c- ugc-u-u--- UGAC-U-GGG ACAGAUCUU( UGCAAUUA)U UGGUCUCA-A 5521 ACGAGG-AAU U--UUUAGUA AU-CGC-AGG (-UCAUUAA- )CCUGC-G-U -UGAAUGCG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUGC-U-A CC-GAU--ug gg-uuuuac- 5641 agu-uacg-- cgu-ucgga- ggac-gaug- uuuu-cgggu cu-------- ---------- 5701 -------(ua ac----)--- ---------- ---------- --------gg gcuc-cgg-- 5761 ggcguc-ggc -caaa-|guu -cuaacuacu gu-acg-g-c cuag-AGGAA GC-AGAA-G- 5821 UCGUAACAAG GU-------- -----A-A-U CGUAGG(UGA A)CCUGCGUU UGGAUCA--- 5881 --UUA~~~~~ ~~~~~~~~|| ||| // LOCUS D.iridis 5903 bp RNA RNA 11-JAN-191 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: X71793 ID DIS7RNAA standard; DNA; FUN; 313 BP. XX AC X71793; XX DT 13-MAY-1993 (Rel. 35, Created) DT 13-MAY-1993 (Rel. 35, Last updated, Version 1) XX DE D.iridis (S7) gene for small subunit ribosomal RNA XX KW small subunit ribosomal RNA. XX OS Didymium iridis OC Eukaryota; Plantae; Thallobionta; Myxomycota; Myxomycetes; OC Myxogastromycetidae; Physarales; Didymiaceae. XX RN [1] RA Johansen S., Vogt V.M.; RT "An intron in the nuclear ribosomal DNA of didymium iridis codes RT for a group I ribozyme and a novel ribozyme that cooperate in self RT splicing"; RL Unpublished. XX RN [2] RP 1-313 RA Johansen S.; RT ; RL Submitted (05-MAY-1993) on tape to the EMBL Data Library by: RL S. Johansen, Institute of Medical Biology, University of Tromso, RL MH-Building, Breivika, 9037 Tromso, NORWAY XX FH Key Location/Qualifiers FH FT source 1..313 FT /organism="Didymium iridis" FT /strain="S7" FT rRNA 1..313 FT /gene="SSU rRNA" FT /product="ribosomal RNA small subunit" XX SQ Sequence 313 BP; 86 A; 68 C; 79 G; 80 T; 0 other; BASE COUNT 86 a 68 c 79 g 80 t 5590 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~(~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~>~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-|~~~~~~ 1621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~AAACUU -AAAG--GAA -UUG|AC-GG -AA-GGGCA- -CACA-A-AG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --A-GU|-GG 4021 AACCUGCG|G CU+UAAUUUG (ACUCAA-CA )CGGG--AAA ACUCACCAGG UC[cag-aua 4081 cacg-uauga aa-----gac aag(cugaaa g-a)------ cuuuu----- cuc-aaug-a 4141 uguaag---- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU-G-CAUG |GUC|GU-UC UUA|GUUCG- U|GGA(-UUG 4261 A-)UUUGUC- -UGG(UC-UA UU)CCGAUA- AC-GAGCGAG ACCCC-UA|- ---------- 4321 ------(--- --)[CGUucC UAAU-AGggg c--ggc-agc ccgcuuugcc ---------- 4381 ---------- ---------- -------uuc ac-------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---ggcuucg cuagc-agcc gccu-aa--- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ----uuaa-- CU-------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------U CUUAGACG]- --|------- ---------- UAUc-aga-g -c-c(----- 5041 --gauaa-)g guuc-u-uga aa---UGGGU UA~~~~--~~ ~~~------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ---~~~~~~~ ~|~~~~|~~~ 5221 ~~~~~~~~~~ ~~~~~~~~~~ ~-~~~~~~~~ ~~~~~--~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5281 ~~~(-~~~~~ ~~~~)[~~~~ ~~~~~~~--- ---------- -----~~~~~ ~~~~~~~~~~ 5341 -~~~~~~~~~ ~~~~~~~~~( ~~~~~)~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~------ 5401 ~~~~~~~-~~ ~~~(~~~~-) ~~~~~~--~~ ~~~~~~~~~~ ~~~~~~]~~~ ~~~~~~~~~~ 5461 ~~~~~~~~~~ ~~~~~-~~-- ~~~~-~-~~~ ~~~~~~~~~( ~~~~~~~~)~ ~~~~~~~~~~ 5521 ~~~~~~-~~~ ~--~~~~~~~ ~~-~~~~~~~ (-~~~~~~~- )~~~~~~~-~ ~~~~~~~~~- 5581 ~~~~~~~~~~ ~~|~~~~-~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~-~~~~~~~ 5641 ~~~-~~~~~- ~~~-~~~~~- ~~~~-~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ---------- 5701 -------(~~ ~~~~~~)~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~-~ 5761 ~~~~~~~~~~ -~~~~-|~~~ ~~~~~~~~~~ ~~-~~~~~-~ ~~~~~~~~~~ ~~~~~~~~~~ 5821 ~~~~~~~~~~ ~~-------- -----~~~-~ ~~~~~~(~~~ ~)~~~~~~~~ ~~~~~~~~~~ 5881 ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS (2)-Paraba 5903 bp RNA RNA 13-JAN-1999 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: DIVIDER BASE COUNT 0 a 0 c 0 g 0 t 5903 others ORIGIN 1 |......... .......... .......... .......... .......... .......... 61 .......... .......... .......... .......... .......... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......... .......... .......... .......... 241 .......... .......... .......... .......... .......... .......... 301 .......... .......... .......... .......... .......... .......... 361 .......... .......... .......... .......... .......... .......... 421 .......... .......... .......... .......... .......... .......... 481 .......... .......... .......... .......... .......... .......... 541 .......... .......... .......... .......... .......... .......... 601 .......... .......... .......... .......... .......... .......... 661 .......... .......... .......... .......... .......... .......... 721 .......... .......... .......... .......... .......... .......... 781 .......... .......... .......... .......... .......... .......... 841 .......... .......... .......... .......... .......... .......... 901 .......... .......... .......... .......... .......... .......... 961 .......... .......... .......... .......... .......... .......... 1021 .......... .......... .......... .......... .......... .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .......... .......... .......... .......... .......... 1201 .......... .......... .......... .......... .......... .......... 1261 .......... .......... .......... .......... .......... .......... 1321 .......... .......... .......... .......... .......... .......... 1381 .......... .......... .......... .......... .......... .......... 1441 .......... .......... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .....>.... 1561 .......... .......... .......... .......... .......... ..-|...... 1621 .......... .......... .......... .......... .......... .......... 1681 .......... .......... .......... .......... .......... .......... 1741 .......... .......... .......... .......... .......... .......... 1801 .......... .......... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .......... .......... 1921 .......... .......... .......... .......... .......... .......... 1981 .......... .......... .......... .......... .......... .......... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... .......... .......... .......... .......... .......... 2161 .......... .......... .......... .......... .......... .......... 2221 .......... .......... .......... .......... .......... .......... 2281 .......... .......... .......... .......... .......... .......... 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... .......... 2701 .......... .......... .......... .......... .......... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... .......... 2881 .......... .......... .......... .......... .......... .......... 2941 .......... .......... .......... .......... .......... .......... 3001 .......... .......... .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .......... .......... 3181 .......... .......... .......... .......... .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .......... .......... .......... 3361 .......... .......... .......... .......... .......... .......... 3421 .......... .......... .......... .......... .......... .......... 3481 .......... .......... .......... .......... .......... .......... 3541 .......... .......... .......... .......... .......... .......... 3601 .......... .......... .......... .......... .......... .......... 3661 .......... .......... .......... .......... .......... .......... 3721 .......... .......... .......... .......... .......... .......... 3781 .......... .......... .......... .......... .......... .......... 3841 .......... .......... .......... .......... .......... .......... 3901 .......... .......... .......... .......... .......... .......... 3961 .......... .......... .......... .......... .......... .......... 4021 .......... .......... .......... .......... .......... .......... 4081 .......... .......... .......... .......... .......... .......... 4141 .......... .]........ .......... .......... .......... .......... 4201 .......... .......... .......... .......... .......... .......... 4261 .......... .......... .......... .......... .......... .......... 4321 .......... .......... .......... .......... .......... .......... 4381 .......... .......... .......... .......... .......... .......... 4441 .......... .......... .......... .......... .......... .......... 4501 .......... .......... .......... .......... .......... .......... 4561 .......... .......... .......... .......... .......... .......... 4621 .......... .......... .......... .......... .......... .......... 4681 .......... .......... .......... .......... .......... .......... 4741 .......... .......... .......... .......... .......... .......... 4801 .......... .......... .......... .......... .......... .......... 4861 .......... .......... .......... .......... .......... .......... 4921 .......... .......... .......... .......... .......... .......... 4981 .......... .......... .......... .......... .......... .......... 5041 .......... .......... .......... .......... .......... .......... 5101 .......... .......... .......... .......... .......... .......... 5161 .......... .......... .......... .......... .......... .......... 5221 .......... .......... .......... .......... .......... .......... 5281 .......... .......... .......... .......... .......... .......... 5341 .......... .......... .......... .......... .......... .......... 5401 .......... .......... .......... .......... .......... .......... 5461 .......... .......... .......... .......... .......... .......... 5521 .......... .......... .......... .-........ .......... .......... 5581 .......... .......... .......... .......... .......... .......... 5641 .......... .......... .......... .......... .......... .......... 5701 .......... .......... .......... .......... .......... .......... 5761 .......... .......... .......... .......... .......... .......... 5821 .......... .......... .......... .......... .......... .......... 5881 .......... ........|| ||| // LOCUS T.foetus 5903 bp RNA RNA 11-JAN-191 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: M81842 Tritrichomonas foetus T.foetus rDNA unit containing complete seq of smrRNA,ITS,5.8S Small rRNA: 61 to 1631 5.8S rRNA: 1712 to 1870 Large rRNA starts from 1934. Tfrdna. Length: 2046 May 13, 1991 17:41 Check: 3787 .. BASE COUNT 409 a 331 c 430 g 401 t 4332 others ORIGIN 1 |--------- -----UACUU GGU(UGA)UC CU|GCCAAG- G-AA-G-CAC --ACUUCGGU 61 CAUA|-GAUU AA-GCCAUGC A-AGUGU-UA GU|------- |-------(- ---)[----- 121 ---------- ---------- ---------u ---------- -cagg-caac gaa]------ 181 -----|---A CU|G-CGAA- CAGCU-CAUU AACa-cgcu- cag-aauc-- ----uacuug 241 gugg<----- ---------- ---------- ---------- -----cgacc uuucaggucu 301 u>AUUUGG-A UAGCAGCAG( -U-AAUU)CU GGUGC-UAA- UACAUG---- ----(----) 361 ---------- -------(-- --)--|---- --<------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ------|--- ---------- ---------- 661 --------cg a--uuguuuc acugaguu(- ---------- ---------- ---------- 721 -----gaga- -)aac--agu g-gaaaa--g uuga----cc cuccgggc-- ---------- 781 ---------- ---------- ---------- ---------- ---------- ---------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 ---------- ---------- ---------- ---------- ---------- ---------- 1021 -|-------- ---------- ---------- ---------- ---------- ---------- 1081 ---------> -acaccaauc -ga|uugagc ga|--CCU-A UCA-UGCUA- --GUACUUA- 1141 GG(-GUCUUU A)CCU-AGGU A-|GGCUA-U CAC|GGGU-A A-CGGG|CGG -U-(UACC-) 1201 GUC-GGACUG CCG|GAGAAG G-CGCC(U-G AGAGAU)AGC GACU-AUAUC (CACG-)GGU 1261 -AGCAGC-A- ---------| GGC-GC-GA- AACUU-ACCC -ACUCGA-G( ---acu--)U 1321 UCGG-A-GGU -|G|GUAAUG ACCA-GU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 ---------- --uacaugu- caacc(---- --uuuuu)gg uuguu-ugua --uagg---- 1501 --------au ----ugca-c -uuuu--cca g-----ug-c aguga-aacc ----->UAGC 1561 AGAG|GG-CC A-GU-C-UGG U-G(CCA-GC -AGCU|GC-G GU-AA)UUCC AG-|CUCUGC 1621 G-AGUUUG|C UCCCA--UAU UGUUG-CAG| UUA--AAACG CUCGUAGUCA |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 gaacugccug c-aaag-gcg uacgaa--c- au-cuguucg uucacu-gug ---------- 1801 ---------- ------a-a- caaauc-a-- -ggacg---- -cuuag---- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- -------|-- ---------- -------ugu 2581 augg------ ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 -------u-- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- --uu|uagga 2821 -au-gacuua -gc-gcagua ugauaucuu- uaccuuuggu a--aGAUCAA UG--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -AGAG|CCAC ---------- 3001 --CGGGGGUA GA|--UCUAU UUCAUGG-CG -AACG(GU-G GAA---)UGU U-UUGA-C-C 3061 CAUGA-GAG- A-GAAACG-A AGGC(-GAAA )--GC|A--- UCUACC-UA| GA-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------GGG ---UUUCUGU -CGA-U|CA- A-GGGCGAGA 3301 GUAGGAGUA- UCCAACCGG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAGAC)CC-G -GGUAG|UUC CU--ACC-UU AAACGAUGCC GAC|AG|--- 3421 --gggcu-ug ucc-u-u--- ----(----- uuau-----) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------g a-gg-gca-g ga-ccuu--- ---------- ----agGA(- 3661 GAAA-)UCa- -uAGUUC-uu GGGC|-U|C- UGGGGGAACU AC--GA-CC( --GCAA-)GG 3721 CUG-AAACUU -GAAG--GAA -UUG|AC-GG -AA-GGGCA- --CAC-CAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --G-GU|-GG 4021 AGCUUGUG|G CU-UAAUUUG (AAUCAA-CA )CGGG--GAA ACUUACCAGG AC[cag-aug 4081 uuuuuaauga cu-----gac agg(c-uucg g-g)------ ucuuu----- cag-gaua-u 4141 gacuuu---- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU-G-CAUG |GCC|GU-UG GUG|GUGCG- U|GGG(-UUG 4261 A-)CCUGUCa aGCG(UU-GA UU)CAGAUA- AC-GAGCGAG AUUAU-CG|- ---------- 4321 ------(--- --)[CCA--A UUAAAUACUC g--uuucug- ---------u uua------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- ---------- cagagau--- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ------aGA- GU-------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------U CUAAUUGG]- --|------- ---------- GACU-Ccc-u -g-c(----- 5041 -guaucaa)g cagg-A-GGA AGAG-GGUAG CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CCG-UG A|UGUC|CUU 5221 U-AGA-UGCU CUGG-GCUGC A-CGCGCGCU ACAAU--G-U UAGGA----- ---------- 5281 ---(------ ----)[ucaa -agag----- ---------- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- ---------- ---------- 5401 --augcu-gu ccu(gaaa-) aggcua--ca gcua--cucu cgcaau]--- ---------- 5461 -------ACC UAA-C-G--- UAGU-U-GGG AUUGAGGAU( UGUAAU-C)A UUCUCAUG-A 5521 ACCAGG-AAU C--CCUUGUA AA-UGC-GUG (-UCAACAG- )CGCGC-G-U -UGAAUACG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUCC-U-A CC-GAU--UG GA-UGAcuc- 5641 ggu-gaaa-- uua-ucgga- ccu------- ---------- ---------- ---------- 5701 -------(ug cg----)--- ---------- ---------- ---------- ---------- 5761 --------ag -gaaa-|ggu -aauuaaauc ac-guu-a-u cuag-AGGAA GG-AGAA-G- 5821 UCGUAACAAG GU-------- -----A-A-C GGUAGG(UGA A)CCUGCCGU UGGAUCA--- 5881 --GU~~~~~~ ~~~~~~~~|| ||| // LOCUS (2)-Eukary 5903 bp RNA RNA 13-JAN-1999 DEFINITION Eukaryote crown group. ACCESSION No information KEYWORDS No information. SOURCE Eukaryote crown group. ORGANISM Eukaryote crown group. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: DIVIDER BASE COUNT 0 a 0 c 0 g 0 t 5903 others ORIGIN 1 |......... .......... .......... .......... .......... .......... 61 .......... .......... .......... .......... .......... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......... .......... .......... .......... 241 .......... .......... .......... .......... .......... .......... 301 .......... .......... .......... .......... .......... .......... 361 .......... .......... .......... .......... .......... .......... 421 .......... .......... .......... .......... .......... .......... 481 .......... .......... .......... .......... .......... .......... 541 .......... .......... .......... .......... .......... .......... 601 .......... .......... .......... .......... .......... .......... 661 .......... .......... .......... .......... .......... .......... 721 .......... .......... .......... .......... .......... .......... 781 .......... .......... .......... .......... .......... .......... 841 .......... .......... .......... .......... .......... .......... 901 .......... .......... .......... .......... .......... .......... 961 .......... .......... .......... .......... .......... .......... 1021 .......... .......... .......... .......... .......... .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .......... .......... .......... .......... .......... 1201 .......... .......... .......... .......... .......... .......... 1261 .......... .......... .......... .......... .......... .......... 1321 .......... .......... .......... .......... .......... .......... 1381 .......... .......... .......... .......... .......... .......... 1441 .......... .......... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .....>.... 1561 .......... .......... .......... .......... .......... ..-|...... 1621 .......... .......... .......... .......... .......... .......... 1681 .......... .......... .......... .......... .......... .......... 1741 .......... .......... .......... .......... .......... .......... 1801 .......... .......... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .......... .......... 1921 .......... .......... .......... .......... .......... .......... 1981 .......... .......... .......... .......... .......... .......... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... .......... .......... .......... .......... .......... 2161 .......... .......... .......... .......... .......... .......... 2221 .......... .......... .......... .......... .......... .......... 2281 .......... .......... .......... .......... .......... .......... 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... .......... 2701 .......... .......... .......... .......... .......... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... .......... 2881 .......... .......... .......... .......... .......... .......... 2941 .......... .......... .......... .......... .......... .......... 3001 .......... .......... .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .......... .......... 3181 .......... .......... .......... .......... .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .......... .......... .......... 3361 .......... .......... .......... .......... .......... .......... 3421 .......... .......... .......... .......... .......... .......... 3481 .......... .......... .......... .......... .......... .......... 3541 .......... .......... .......... .......... .......... .......... 3601 .......... .......... .......... .......... .......... .......... 3661 .......... .......... .......... .......... .......... .......... 3721 .......... .......... .......... .......... .......... .......... 3781 .......... .......... .......... .......... .......... .......... 3841 .......... .......... .......... .......... .......... .......... 3901 .......... .......... .......... .......... .......... .......... 3961 .......... .......... .......... .......... .......... .......... 4021 .......... .......... .......... .......... .......... .......... 4081 .......... .......... .......... .......... .......... .......... 4141 .......... .]........ .......... .......... .......... .......... 4201 .......... .......... .......... .......... .......... .......... 4261 .......... .......... .......... .......... .......... .......... 4321 .......... .......... .......... .......... .......... .......... 4381 .......... .......... .......... .......... .......... .......... 4441 .......... .......... .......... .......... .......... .......... 4501 .......... .......... .......... .......... .......... .......... 4561 .......... .......... .......... .......... .......... .......... 4621 .......... .......... .......... .......... .......... .......... 4681 .......... .......... .......... .......... .......... .......... 4741 .......... .......... .......... .......... .......... .......... 4801 .......... .......... .......... .......... .......... .......... 4861 .......... .......... .......... .......... .......... .......... 4921 .......... .......... .......... .......... .......... .......... 4981 .......... .......... .......... .......... .......... .......... 5041 .......... .......... .......... .......... .......... .......... 5101 .......... .......... .......... .......... .......... .......... 5161 .......... .......... .......... .......... .......... .......... 5221 .......... .......... .......... .......... .......... .......... 5281 .......... .......... .......... .......... .......... .......... 5341 .......... .......... .......... .......... .......... .......... 5401 .......... .......... .......... .......... .......... .......... 5461 .......... .......... .......... .......... .......... .......... 5521 .......... .......... .......... .-........ .......... .......... 5581 .......... .......... .......... .......... .......... .......... 5641 .......... .......... .......... .......... .......... .......... 5701 .......... .......... .......... .......... .......... .......... 5761 .......... .......... .......... .......... .......... .......... 5821 .......... .......... .......... .......... .......... .......... 5881 .......... ........|| ||| // LOCUS (3)-Acanth 5903 bp RNA RNA 13-JAN-1999 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: DIVIDER BASE COUNT 0 a 0 c 0 g 0 t 5903 others ORIGIN 1 |......... .......... .......... .......... .......... .......... 61 .......... .......... .......... .......... .......... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......... .......... .......... .......... 241 .......... .......... .......... .......... .......... .......... 301 .......... .......... .......... .......... .......... .......... 361 .......... .......... .......... .......... .......... .......... 421 .......... .......... .......... .......... .......... .......... 481 .......... .......... .......... .......... .......... .......... 541 .......... .......... .......... .......... .......... .......... 601 .......... .......... .......... .......... .......... .......... 661 .......... .......... .......... .......... .......... .......... 721 .......... .......... .......... .......... .......... .......... 781 .......... .......... .......... .......... .......... .......... 841 .......... .......... .......... .......... .......... .......... 901 .......... .......... .......... .......... .......... .......... 961 .......... .......... .......... .......... .......... .......... 1021 .......... .......... .......... .......... .......... .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .......... .......... .......... .......... .......... 1201 .......... .......... .......... .......... .......... .......... 1261 .......... .......... .......... .......... .......... .......... 1321 .......... .......... .......... .......... .......... .......... 1381 .......... .......... .......... .......... .......... .......... 1441 .......... .......... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .....>.... 1561 .......... .......... .......... .......... .......... ..-|...... 1621 .......... .......... .......... .......... .......... .......... 1681 .......... .......... .......... .......... .......... .......... 1741 .......... .......... .......... .......... .......... .......... 1801 .......... .......... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .......... .......... 1921 .......... .......... .......... .......... .......... .......... 1981 .......... .......... .......... .......... .......... .......... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... .......... .......... .......... .......... .......... 2161 .......... .......... .......... .......... .......... .......... 2221 .......... .......... .......... .......... .......... .......... 2281 .......... .......... .......... .......... .......... .......... 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... .......... 2701 .......... .......... .......... .......... .......... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... .......... 2881 .......... .......... .......... .......... .......... .......... 2941 .......... .......... .......... .......... .......... .......... 3001 .......... .......... .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .......... .......... 3181 .......... .......... .......... .......... .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .......... .......... .......... 3361 .......... .......... .......... .......... .......... .......... 3421 .......... .......... .......... .......... .......... .......... 3481 .......... .......... .......... .......... .......... .......... 3541 .......... .......... .......... .......... .......... .......... 3601 .......... .......... .......... .......... .......... .......... 3661 .......... .......... .......... .......... .......... .......... 3721 .......... .......... .......... .......... .......... .......... 3781 .......... .......... .......... .......... .......... .......... 3841 .......... .......... .......... .......... .......... .......... 3901 .......... .......... .......... .......... .......... .......... 3961 .......... .......... .......... .......... .......... .......... 4021 .......... .......... .......... .......... .......... .......... 4081 .......... .......... .......... .......... .......... .......... 4141 .......... .]........ .......... .......... .......... .......... 4201 .......... .......... .......... .......... .......... .......... 4261 .......... .......... .......... .......... .......... .......... 4321 .......... .......... .......... .......... .......... .......... 4381 .......... .......... .......... .......... .......... .......... 4441 .......... .......... .......... .......... .......... .......... 4501 .......... .......... .......... .......... .......... .......... 4561 .......... .......... .......... .......... .......... .......... 4621 .......... .......... .......... .......... .......... .......... 4681 .......... .......... .......... .......... .......... .......... 4741 .......... .......... .......... .......... .......... .......... 4801 .......... .......... .......... .......... .......... .......... 4861 .......... .......... .......... .......... .......... .......... 4921 .......... .......... .......... .......... .......... .......... 4981 .......... .......... .......... .......... .......... .......... 5041 .......... .......... .......... .......... .......... .......... 5101 .......... .......... .......... .......... .......... .......... 5161 .......... .......... .......... .......... .......... .......... 5221 .......... .......... .......... .......... .......... .......... 5281 .......... .......... .......... .......... .......... .......... 5341 .......... .......... .......... .......... .......... .......... 5401 .......... .......... .......... .......... .......... .......... 5461 .......... .......... .......... .......... .......... .......... 5521 .......... .......... .......... .-........ .......... .......... 5581 .......... .......... .......... .......... .......... .......... 5641 .......... .......... .......... .......... .......... .......... 5701 .......... .......... .......... .......... .......... .......... 5761 .......... .......... .......... .......... .......... .......... 5821 .......... .......... .......... .......... .......... .......... 5881 .......... ........|| ||| // LOCUS A.castel.1 5903 bp RNA RNA 08-APR-1987 DEFINITION Acanthameoba castellanii; ribosomal RNA small subunit. ACCESSION M13435 KEYWORDS ribosomal RNA small subunit. SOURCE Acanthameoba castellanii. ORGANISM Acanthameoba castellanii. REFERENCE 1 (bases 1 to 2303) AUTHORS Gunderson,J.H. and Sogin,M.L. TITLE Length variation in eukaryotic rRNAs: Small subunit rRNAs from JOURNAL Gene 44, 63-70 (1986) STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: M13435 Phylo:Eukaryotes,Protozoan Computer-readable sequence for [1] kindly provided by M.L.Sogin , 19-OCT-1986. The small subunit rRNA of A.castellani is about 30% larger than those of other eukaryotes. The extra nucleotides are located in the highly variable regions of the rRNA genes. NCBI gi: 155632 BASE COUNT 531 a 540 c 651 g 581 t 3600 others ORIGIN 1 |--------- -----UACCU GGU(UGA)UC CU|GCCAGU- A-GUCA-UAU --GCUUGUCU 61 CAAA|-GAUU AA-GCCAUGC A-UGUCU-AA GU|------- |-------(- ---)[----- 121 ---------- --------au aagcuuguuu ---------- -au-a-cggc gag]------ 181 -----|---A CU|G-CGGA- UGGCU-CAUU AAAu-cagu- uau-aguu-- ----uauuug 241 augg<----- ---------- -----ucuc- --------u- --uuugucuu --uuuuuacc 301 u>ACUUGG-A UAACCGUGG( -U-AAUU)CU AGAGC-UAA- UACAUG---- ----(----) 361 ---------- -------(-- --)--|---- -- -gauucauuc -aa|auuucu gc|--CCU-A UCA--ACUUU C-GAUGGUA- 1141 GG(-AUAGAG G)CCU-ACCA U-|GGUCG-U AAC|GGGU-A A-CGGA|GAA -U-(UAGG-) 1201 GUU-CGAUU- CCG|GAGAGG G-AGCC(U-G AGAAAU)GGC UACC-ACUUC (UAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GC- AAAUU-ACCC -AAUCCC-G( ---aca--)C 1321 GGGG-A-GGU -|A|GUGACA AUAA-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AA CAAUACAGG- cgCUC(---- --gauaa)GA GU-CU-UGUA A-UUGGAAU- 1501 ------GAGU ----ACAAUU -UAAA--CCC C-----UU-A A-CGA-GUAA C---->AAUU 1561 GGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCCAA 1621 U-AGCGUA|U AUUAA--AGU UGUUG-CAG| UUA--AAAAG CUCGUAGUUG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 gauc------ ---------- ---------- ---------- ---------- ---------- 1801 ---------- --------u- --agggacgc g-cauuucaa g---cgcccg ugucgucggg 1861 ucaa------ ---------- -----acc-g gcgac-ugc- guuggcgu-- --ugc-gggc 1921 u--------c gguccgucgg uggacccucg uggucuua-- -aucggcgug ucaaccggcc 1981 cgcccg---- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- --uccccucc 2161 uucuggauu- ---------- ---------- -cccguuccu gcua------ ---------- 2221 ---uugaguu aguggggacg ucacaggg-g gcuc-aucgu cgucaugca- --------aa 2281 uggcggcggu g-ggucccug gggcccagau c--------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- -GUUUACCGU 2521 G-AAAA--AA UUAG-A-GUG UUCAA-AG-C AGGCagauc- -------c-- ---------- 2581 --a------- ---auuuucu gccacc-GAA UACAU-UAGC AUGGGA|UA- AUGGAA-UAG 2641 GA---cccug uc-------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- --------cu ccua|-UUUU 2821 -CA-GUUGGU -UU-uggcag c-gcgAGGA- CUA--GGGUA A--UGAUUAA UA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGA|UAGU ---------- 3001 --UGGGGGCA UU|--AAUAU UUAAUUG-UC -AGAG(GU-G AAA---)UUC U-UGGA-U-U 3061 UAUGA-AAG- A-UUAACU-U CUGC(-GAAA )--GC|A--- UCUGCC-AA| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUG ---UUUUCAU -UAA-U|CA- A-GAACGAAA 3301 GUUAGGGGA- UCGAAGACG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CGUAG|UCU UA--ACC-AU AAACGAUGCC GAC|CA|--- 3421 --gcgau-ua gga-g-a--- ----(----- ---------) -cguugaaua caaaacacca 3481 ccaucggc-g cggucguccu ug-gcgucug ucccu(uuca ac)gggggca ggcgcg--ag 3541 ggcgguuuag -cccgguggc --accgguga augac----- ---------- ---------- 3601 ---------- ---------u c-cc-cua-g -c-agcuu-- ---------- ----guGA(- 3661 GAAA-)UCau -AAGUC-uuu gGGU|-U|C- CGGGGGGAGU AU--GG-UC( --GCAA-)GG 3721 CUG-AAACUU -AAAG--GAA -UUG|AC-GG -AA-GGGCA- -CCAC-CAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --A-GU|-GG 4021 AGCCUGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--GAA ACUUACCAGG UC[cgg-aca 4081 uagu-aagga uu-----gac aga(uugaua g-c)------ ucuuu----- cuu-gauu-c 4141 uauggg---- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU-G-CAUG |GCC|GU-UC UUA|GUUGG- U|GGA(-GUG 4261 A-)UUUGUC- -UGG(UU-AA UU)CCGUUA- AC-GAACGAG ACCUU-AA|- ---------- 4321 ------(--- --)[CcU-GC UAAAUAugcc g--cgcuaac ccguccauca aaac-ccau- 4381 gcg--ugg-c uc--ac---- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ----gcgguc cgcugcgggg uggugu---- cgc(uucg)c ggcg--acgu caucccgccg 4621 gcagggcccg gguccgugug ggcgguaggg uucggcgu-- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ----ccgug- CU-------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------U CUUAGAGG]- --|------- ---------- GACU-Gcu-g cg-c(----- 5041 --gccua-)g ccag-C-GGA AGuU-UGAGG CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UG A|UGCC|CU- 5221 U-AGA-UGUU CUGG-GCCGC A-CGCGCGCU ACACU--G-A UUAAU----- ---------- 5281 ---(------ ----)[ccaa cgagucc--- ---------- --g----cuu caaucga-gg 5341 cgcgaugcc- --guugggg( -ucaa)accc aacu----gu gucgcugucc ucgau----- 5401 cgcgccu-gg gcc(gaua-) ggucc----g gguaau-cuu ugcaaa]--- ---------- 5461 -------uuu aau-c-g--- uGCU-G-GGG AUAGAUCAU( UGUAAUUA)U UGAUCUUC-A 5521 ACGAGG-AAU U--CCUAGUA AG-CGC-GAG (-UCAUCAG- )CUCGCGU-U -GAUUACG-- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUCC-U-A CC-GAU--UG AA-UGGucc- 5641 ggu-gaaa-- ucc-ucgga- gccg-uggc- cucu-a---c gcaa-uccgg ---------- 5701 -------(gc aa----)ccg ggcuugugag guc------- ---------- --uc-ccc-- 5761 uuuugg-cgg -cgaa-|guc -gauugaacc uu-acc-a-u uuag-AGGAA GG-AGAA-G- 5821 UCGUAACAAG GU-------- -----C-U-C CGUAGG(UGA A)CCUGCGGA GGGAUCA--- 5881 --UUA~~~~~ ~~~~~~~~|| ||| // LOCUS A.castel.2 5903 bp RNA RNA 11-JAN-191 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: U07405 LOCUS ACU07405 2284 bp DNA INV 02-JUL-1994 DEFINITION Acanthamoeba castellanii CDC:0180:1 18S rRNA gene. ACCESSION U07405 KEYWORDS . SOURCE amoeba ORGANISM Acanthamoeba castellanii Eucaryotae; Protozoa; Sarcomastigophora; Sarcodina; Rhizopoda; Lobosa; Amoebida; Acanthamoeba. REFERENCE 1 (bases 1 to 2284) AUTHORS Gast,R.J., Ledee,D.R., Fuerst,P.A. and Byers,T.J. TITLE Population Structure of Acanthamoeba: Nuclear srRNA Gene Phylogenetic Analysis of 18 Group II and III Isolates JOURNAL Unpublished STANDARD full automatic REFERENCE 2 (bases 1 to 2284) AUTHORS Gast,R.J. TITLE Direct Submission JOURNAL Submitted (05-MAR-1994) Rebecca J. Gast, The Ohio State University, Molecular Genetics, 484 West 12th Avenue, Columbus, OH 43210, USA STANDARD full automatic COMMENT NCBI gi: 507401 FEATURES Location/Qualifiers primer_bind <1..17 /citation=[1] /note="PCR amplification primer; the first 6 predicted bases were not sequenced" rRNA 18..2261 /product="18S ribosomal DNA" /citation=[1] primer_bind 2262..2284 /citation=[1] /note="PCR amplification primer" source 1..2284 /strain="CDC:0180:1" /organism="Acanthamoeba castellanii" BASE COUNT 525 a 529 c 650 g 577 t 3 others ORIGIN BASE COUNT 525 a 529 c 650 g 577 t 3622 others ORIGIN 1 |--------- ---------- -GU(UGA)UC CU|GCCAGU- A-GUCA-UAU --GCUUGUCU 61 CAAA|-GAUU AA-GCCAUGC A-UGUCU-AA GU|------- |-------(- ---)[----- 121 ---------- --------au aagcuuguuu ---------- -au-a-cggc gag]------ 181 -----|---A CU|G-CGGA- UGGCU-CAUU AAAU-cagu- uau-aguu-- ----uauuug 241 augg<----- ---------- -----ucuc- --------u- --uuugucuu uuuuuuuacc 301 u>ACUUGG-A UAACCGUGG( -U-AAUU)CU AGAGC-UAA- UACAUG---- ----(----) 361 ---------- -------(-- --)--|---- -- -gauucauuc -aa|auuucu gc|--CCU-A UCA--ACUUU C-GAUGGUA- 1141 GG(-AUAGAG G)CCU-ACCA U-|GGUCG-U AAC|GGGU-A A-CGGA|GAA -U-(UAGG-) 1201 GUU-CGAUU- CCG|GAGAGG G-AGCC(U-G AGAAAU)GGC UACC-ACUUC (UAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GC- AAAUU-ACCC -AAUCCC-G( ---aca--)C 1321 GGGG-A-GGU -|A|GUGACA AUNA-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AA CAAUACAGG- CGCUC(---- --gauaa)GA GU-CU-UGUA A-UUGGAAU- 1501 ------GAGU ----ACAAUU -UAAA--CCC C-----UU-A A-CGA-GUAA C---->AAUU 1561 GGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCCAA 1621 U-AGCGUA|U AUUAA--AGU UGUUG-CAG| UUA--AAAAG CUCGUAGUUG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 gauc------ ---------- ---------- ---------- ---------- ---------- 1801 ---------- --------u- --agggacgc g-cauuucaa g---cgcccg ugucguuggg 1861 ucaa------ ---------- -----acc-a gcgac-ugc- guuggcgu-- --ugc-gggc 1921 u--------c gguccgucgg uggccacaca aaug-gcc-- -acuggcgug ucaaccggcc 1981 cgcccg---- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- --uccccucc 2161 uucuggauu- ---------- ---------- -cccguuccu gcua------ ---------- 2221 ---uugaguu aguggggacg ucacaggg-g gcuc-aucgu cgaucgugca aac------- 2281 gggcggcggu g-ggucccug gggcccagau c--------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- -GUUUACCGU 2521 G-AAAA--AA UUAG-A-GUG UUCAA-AG-C AGGCagauc- -------c-- ---------- 2581 --a------- ---auuuucu gccacc-GAA UACAU-UAGC AUGGGA|UA- AUGGAA-UAG 2641 GA---cccug uc-------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- --------cu ccua|-UUUU 2821 -CA-GUUGGU -UU-uggcag c-gcgAGGA- CUA--GGGUA A--UGAUUAA UA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGA|UAGU ---------- 3001 --UGGGGGCA UU|--AAUAU UUAAUUG-UC -AGAG(GU-G AAA---)UUC U-UGGA-U-U 3061 UAUGA-AAG- A-UUAACU-U CUGC(-GAAA )--GC|A--- UCUGCC-AA| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUG ---UUUUCAU -UAA-U|CA- A-GAACGAAA 3301 GUUAGGGGA- UCGAAGACG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CGUAG|UCU UA--ACC-AU AAACGAUGCC GAC|CA|--- 3421 --gcgau-ua gga-g-a--- ----(----- ---------) -cguugaaua caaaacacca 3481 ccaucgguug cggucguccu ug---gcguc ucggu(-uuc g-)gccgggg cgc---gggg 3541 acgguuuag- -cccgguggc --accgguga augac----- ---------- ---------- 3601 ---------- ---------u c-cc-cua-g -c-agcuu-- ---------- ----guGA(- 3661 GAAA-)UCAU -AAGUC-UUU GGGU|-U|C- CGGGGGGAGU AU--GG-UC( --GCAA-)GG 3721 CUG-AAACUU -AAAG--GAA -UUG|AC-GG -AA-GGGCA- -CCAC-CAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --A-GU|-GG 4021 AGCCUGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--GAA ACUUACCAGG UC[cgg-aca 4081 uagu-aagga uu-----gac aga(uugaua g-c)------ ucuuu----- cuu-gauu-c 4141 uauggg---- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU-G-CAUG |GCC|GU-UC UUA|GUUGG- U|GGA(-GUG 4261 A-)UUUGUC- -UGG(UU-AA UU)CCGUUA- AC-GAACGAG ACCUU-AA|- ---------- 4321 ------(--- --)[CCU-GC UAAAUAugcc g--cgcuaac ccguccauca aaac-ccau- 4381 gcg--ugg-c uc--ac---- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ----gcgguc cgcugngggg uggugu---c gcu(ucgc)g gcg---augu caucccgccg 4621 gcagggcccg gguccgugug ggcgguaggg uucggcgu-- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ----ccguG- CU-------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------U CUUAGAGG]- --|------- ---------- GACU-Gcu-g cg-c(----- 5041 --gccua-)g ccag-C-GGA AGUU-UGAGG CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UG A|UGCC|CU- 5221 U-AGA-UGUU CUGG-GCCGC A-CGCGCGCU ACACU--G-A UUAAU----- ---------- 5281 ---(------ ----)[ccaa cgagucc--- ---------- --g----cuu caaucga-gg 5341 cguggcgc-- uggucgggg( -ucaa)accc gaucc---gc gucgcugucc ucgau----- 5401 cgcgccu-gg gcc(gaua-) ggucc----g gguaau-cuu ugcaaa]--- ---------- 5461 -------uuu aau-c-g--- uGCU-G-GGG AUAGAUCAU( UGUAAUUA)U UGAUCUUC-A 5521 ACGAGG-AAU U--CCUAGUA AG-CGC-GAG (-UCAUCAG- )CUCGCGU-U -GAUUACG-- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUCC-U-A CC-GAU--UG AA-UGGucc- 5641 ggu-gaaa-- ucc-ucgga- gccg-uggc- cucu-a---c gcaa-uccgg ---------- 5701 -------(gc aa----)ccg gg-uugugag guc------- ---------- --uc-ccc-- 5761 uuuugg-cgg -cgaa-|guc -gauugaacc uu-acc-a-u uuag-AGGAA GG-AGAA-G- 5821 UCGUAACAAG GU-------- -----C-U-C CGUAGG(UGA A)-CUGCGGA NGGAUCA--- 5881 --gga----- -------~|| ||| // LOCUS A.castel.3 5903 bp RNA RNA 11-JAN-191 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: U07416 LOCUS ACU07416 2299 bp DNA INV 02-JUL-1994 DEFINITION Acanthamoeba castellanii Neff ATCC 50373 18S rRNA gene. ACCESSION U07416 KEYWORDS . SOURCE amoeba ORGANISM Acanthamoeba castellanii Eucaryotae; Protozoa; Sarcomastigophora; Sarcodina; Rhizopoda; Lobosa; Amoebida; Acanthamoeba. REFERENCE 1 (bases 1 to 2299) AUTHORS Gast,R.J., Ledee,D.R., Fuerst,P.A. and Byers,T.J. TITLE Population Structure of Acanthamoeba: Nuclear srRNA Gene Phylogenetic Analysis of 18 Group II and III Isolates JOURNAL Unpublished STANDARD full automatic REFERENCE 2 (bases 1 to 2299) AUTHORS Gast,R.J. TITLE Direct Submission JOURNAL Submitted (05-MAR-1994) Rebecca J. Gast, The Ohio State University, Molecular Genetics, 484 West 12th Avenue, Columbus, OH 43210, USA STANDARD full automatic COMMENT NCBI gi: 507412 FEATURES Location/Qualifiers primer_bind <1..20 /citation=[1] /note="PCR amplification primer; the first 3 predicted bases were not sequenced" rRNA 21..2276 /product="18S ribosomal RNA" /citation=[1] primer_bind 2277..2299 /citation=[1] /note="PCR amplification primer" source 1..2299 /strain="Neff ATCC 50373" /organism="Acanthamoeba castellanii" BASE COUNT 531 a 538 c 652 g 578 t ORIGIN BASE COUNT 531 a 538 c 652 g 578 t 3604 others ORIGIN 1 |--------- --------CU GGU(UGA)UC CU|GCCAGU- A-GUCA-UAU --GCUUGUCU 61 CAAA|-GAUU AA-GCCAUGC A-UGUCU-AA GU|------- |-------(- ---)[----- 121 ---------- --------au aagcuuguuu ---------- -au-a-cggc gag]------ 181 -----|---A CU|G-CGGA- UGGCU-CAUU AAAU-cagu- uau-aguu-- ----uauuug 241 augg<----- ---------- -----ucuc- --------u- --uuugucuu --uuuuuacc 301 u>ACUUGG-A UAACCGUGG( -U-AAUU)CU AGAGC-UAA- UACAUG---- ----(----) 361 ---------- -------(-- --)--|---- -- -gauucauuc -aa|auuucu gc|--CCU-A UCA--ACUUU C-GAUGGUA- 1141 GG(-AUAGAG G)CCU-ACCA U-|GGUCG-U AAC|GGGU-A A-CGGA|GAA -U-(UAGG-) 1201 GUU-CGAUU- CCG|GAGAGG G-AGCC(U-G AGAAAU)GGC UACC-ACUUC (UAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GC- AAAUU-ACCC -AAUCCC-G( ---aca--)C 1321 GGGG-A-GGU -|A|GUGACA AUAA-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AA CAAUACAGG- CGCUC(---- --gauaa)GA GU-CU-UGUA A-UUGGAAU- 1501 ------GAGU ----ACAAUU -UAAA--CCC C-----UU-A A-CGA-GUAA C---->AAUU 1561 GGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCCAA 1621 U-AGCGUA|U AUUAA--AGU UGUUG-CAG| UUA--AAAAG CUCGUAGUUG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 gauc------ ---------- ---------- ---------- ---------- ---------- 1801 ---------- --------u- --agggacgc g-cauuucaa g---cgcccg ugucgucggg 1861 ucaa------ ---------- -----acc-g gcgac-ugc- guuggcgu-- --ugc-gggc 1921 u--------c gguccgucgg uggacccucg uggucuua-- -aucggcgug ucaaccggcc 1981 cgcccg---- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- --uccccucc 2161 uucuggauu- ---------- ---------- -cccguuccu gcua------ ---------- 2221 ---uugaguu aguggggacg ucacaggg-g gcuc-aucgu cgucaugca- --------aa 2281 uggcggcggu g-ggucccug gggcccagau c--------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- -GUUUACCGU 2521 G-AAAA--AA UUAG-A-GUG UUCAA-AG-C AGGCagauc- -------c-- ---------- 2581 --a------- ---auuuucu gccacc-GAA UACAU-UAGC AUGGGA|UA- AUGGAA-UAG 2641 GA---cccug uc-------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- --------cu ccua|-UUUU 2821 -CA-GUUGGU -UU-uggcag c-gcgAGGA- CUA--GGGUA A--UGAUUAA UA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGA|UAGU ---------- 3001 --UGGGGGCA UU|--AAUAU UUAAUUG-UC -AGAG(GU-G AAA---)UUC U-UGGA-U-U 3061 UAUGA-AAG- A-UUAACU-U CUGC(-GAAA )--GC|A--- UCUGCC-AA| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUG ---UUUUCAU -UAA-U|CA- A-GAACGAAA 3301 GUUAGGGGA- UCGAAGACG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CGUAG|UCU UA--ACC-AU AAACGAUGCC GAC|CA|--- 3421 --gcgau-ua gga-g-a--- ----(----- ---------) -cguugaaua caaaacacca 3481 ccaucggc-g cggucguccu ug-gcgucug ucccu(uuca ac)gggggca ggcgcg--ag 3541 ggcgguuuag -cccgguggc --accgguga augac----- ---------- ---------- 3601 ---------- ---------u c-cc-cua-g -c-agcuu-- ---------- ----guGA(- 3661 GAAA-)UCAU -AAGUC-UUU GGGU|-U|C- CGGGGGGAGU AU--GG-UC( --GCAA-)GG 3721 CUG-AAACUU -AAAG--GAA -UUG|AC-GG -AA-GGGCA- -CCAC-CAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --A-GU|-GG 4021 AGCCUGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--GAA ACUUACCAGG UC[cgg-aca 4081 uagu-aagga uu-----gac aga(uugaua g-c)------ ucuuu----- cuu-gauu-c 4141 uauggg---- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU-G-CAUG |GCC|GU-UC UUA|GUUGG- U|GGA(-GUG 4261 A-)UUUGUC- -UGG(UU-AA UU)CCGUUA- AC-GAACGAG ACCUU-AA|- ---------- 4321 ------(--- --)[CCU-GC UAAAUAugcc g--cgcuaac ccguccauca aaac-ccau- 4381 gcgu--gg-c uc--ac---- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ----gcgguc cgcugcgggg uggugu---c gcu(ucgc)g gcg---acgu caucccgccg 4621 gcagggcccg gguccgugug ggcgguaggg uucggcgu-- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ----ccguG- CU-------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------U CUUAGAGG]- --|------- ---------- GACU-Gcu-g cg-c(----- 5041 --gccua-)g ccag-C-GGA AGUU-UGAGG CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UG A|UGCC|CU- 5221 U-AGA-UGUU CUGG-GCCGC A-CGCGCGCU ACACU--G-A UUAAU----- ---------- 5281 ---(------ ----)[ccaa cgagucc--- ---------- --g----cuu caaucga-gg 5341 cgcgaugcc- --guugggg( -ucaa)accc aacu----gu gucgcugucc ucgau----- 5401 cgcgccu-gg gcc(gaua-) ggucc----g gguaau-cuu ugcaaa]--- ---------- 5461 -------uuu aau-c-g--- uGCU-G-GGG AUAGAUCAU( UGUAAUUA)U UGAUCUUC-A 5521 ACGAGG-AAU U--CCUAGUA AG-CGC-GAG (-UCAUCAG- )CUCGCGU-U -GAUUACG-- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUCC-U-A CC-GAU--UG AA-UGGucc- 5641 ggu-gaaa-- ucc-ucgga- gccg-uggc- cucu-a---c gcaa-uccgg ---------- 5701 -------(gc aa----)ccg gg-uugugag guc------- ---------- --uc-ccc-- 5761 uuuugg-cgg -cgaa-|guc -gauugaacc uu-acc-a-u uuag-AGGAA GG-AGAA-G- 5821 UCGUAACAAG GU-------- -----C-U-C CGUAGG(UGA A)CCUGCGGA AGGAUCA--- 5881 --gga----- -------~|| ||| // LOCUS A.castel.4 5903 bp RNA RNA 11-JAN-191 DEFINITION Acanthamoeba castellanii CDC:0184:V014. ACCESSION No information KEYWORDS No information. SOURCE Acanthamoeba castellanii CDC:0184:V014. ORGANISM Acanthamoeba castellanii CDC:0184:V014. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: U07401 LOCUS ACU07401 2227 bp DNA INV 02-JUL-1994 DEFINITION Acanthamoeba castellanii CDC:0184:V014 18S rRNA gene. ACCESSION U07401 KEYWORDS . SOURCE amoeba ORGANISM Acanthamoeba castellanii Eucaryotae; Protozoa; Sarcomastigophora; Sarcodina; Rhizopoda; Lobosa; Amoebida; Acanthamoeba. REFERENCE 1 (bases 1 to 2227) AUTHORS Gast,R.J., Ledee,D.R., Fuerst,P.A. and Byers,T.J. TITLE Population Structure of Acanthamoeba: Nuclear srRNA Gene Phylogenetic Analysis of 18 Group II and III Isolates JOURNAL Unpublished STANDARD full automatic REFERENCE 2 (bases 1 to 2227) AUTHORS Gast,R.J. TITLE Direct Submission JOURNAL Submitted (05-MAR-1994) Rebecca J. Gast, The Ohio State University, Molecular Genetics, 484 West 12th Avenue, Columbus, OH 43210, USA STANDARD full automatic COMMENT NCBI gi: 507397 FEATURES Location/Qualifiers primer_bind 1..23 /citation=[1] /note="PCR amplification primer" rRNA 24..2204 /product="18S ribosomal RNA" /citation=[1] /note="the predicted 66 bases at the 3' end of the 18S gene are undetermined for this isolate" source 1..2227 /strain="CDC:0184:V014" /organism="Acanthamoeba castellanii" BASE COUNT 511 a 523 c 628 g 562 t 3 others ORIGIN BASE COUNT 511 a 523 c 628 g 562 t 3679 others ORIGIN 1 |--------- -----CGACN NGU(UGA)UC CU|GCCAGU- A-GUCA-UAU --GCUUGUCU 61 CAAA|-GAUU AA-GCCAUGC A-UGUCU-AA GU|------- |-------(- ---)[----- 121 ---------- --------au aagcuuguuu ---------- -au-a-cggc gag]------ 181 -----|---A CU|G-CGGA- UGGCU-CAUU AAAU-cagu- uau-aguu-- ----uauuug 241 augg<----- ---------- -----ucuc- --------u- --uuugucuu --uuuuuacc 301 u>ACUUGG-A UAACCGUGG( -U-AAUU)CU AGAGC-UAA- UACAUG---- ----(----) 361 ---------- -------(-- --)--|---- -- -gauucauuc -aa|auuucu gc|--CCU-A UCA--ACUUU C-GAUGGUA- 1141 GG(-AUAGAG G)CCU-ACCA U-|GGUCG-U AAC|GGGU-A A-CGGA|GAA -U-(UAGG-) 1201 GUU-CGAUU- CCG|GAGAGG G-AGCC(U-G AGAAAU)GGC UACC-ACUUC (UAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GC- AAAUU-ACCC -AAUCCC-G( ---aca--)C 1321 GGGG-A-GGU -|A|GUGACA AUAA-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AA CAAUACAGG- CGCUC(---- --gauaa)GA GU-CU-UGUA A-UUGGAAU- 1501 ------GAGU ----ACAAUU -UAAA--CCC C-----UU-A A-CGA-GUAA C---->AAUU 1561 GGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCCAA 1621 U-AGCGUA|U AUUAA--AGU UGUUG-CAG| UUA--AAAAG CUCGUAGUUG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 gauc------ ---------- ---------- ---------- ---------- ---------- 1801 ---------- --------u- --agggacgc g-cauuucaa g---cgcccg ugccaucggg 1861 ucaa------ ---------- -----acc-g guggc-ugc- guuggcgu-- --ugc-gggc 1921 u--------c gguccgucgg ug--cccaca aa---gc--- -aucggcgug ucaaccggcc 1981 cgcccg---- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- --uccccucc 2161 uucuggauu- ---------- ---------- -cccguuccu gcua------ ---------- 2221 ---uugaguu aguggggacg ucacaggg-g gccc-aucgu cgccaug-ca aau------- 2281 -ggcggcggu g-ggucucug gggcccagau c--------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- -GUUUACCGU 2521 G-AAAA--AA UUAG-A-GUG UUCAA-AG-C AGGCagauc- -------c-- ---------- 2581 --a------- ---auuuucu gccacc-GAA UACAU-UAGC AUGGGA|UA- AUGGAA-UAG 2641 GA---cccug uc-------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- --------cu ccua|-UUUU 2821 -CA-GUUGGU -UU-uggcag c-gcgAGGA- CUA--GGGUA A--UGAUUAA UA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGA|UAGU ---------- 3001 --UGGGGGCA UU|--AAUAU UUAAUUG-UC -AGAG(GU-G AAA---)UUC U-UGGA-U-U 3061 UAUGA-AAG- A-UUAACU-U CUGC(-GAAA )--GC|A--- UCUGCC-AA| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUG ---UUUUCAU -UAA-U|CA- A-GAACGAAA 3301 GUUAGGGGA- UCGAAGACG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CGUAG|UCU UA--ACC-AU AAACGAUGCC GAC|CA|--- 3421 --gcgau-ua gga-g-a--- ----(----- ---------) -cguugaaua caaaacacca 3481 ccaucggu-g cggucguccu ug---gcguu ggucu(-uca a-)aagccag cgc---gggg 3541 guggcuuag- -cccgguggc --accgguga augac----- ---------- ---------- 3601 ---------- ---------u c-cc-cua-g -c-ugcuu-- ---------- ----guGA(- 3661 GAAA-)UCAU -AAGUC-UUU GGGU|-U|C- CGGGGGGAGU AU--GG-UC( --GCAA-)GG 3721 CUG-AAACUU -AAAG--GAA -UUG|AC-GG -AA-GGGCA- -CCAC-CAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --A-GA|-GG 4021 AGCCUGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--GAA ACUUACCAGG UC[cgg-aca 4081 uagu-aagga uu-----gac aga(uugaua g-c)------ ucuuu----- cuu-gauu-c 4141 uauggg---- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU-G-CAUG |GCC|GU-UC UUA|GUUGG- U|GGA(-GUG 4261 A-)UUUGUC- -UGG(UU-AA UU)CCGUUA- AC-GAACGAG ACCUU-AA|- ---------- 4321 ------(--- --)[CCU-GC UAAAUAugcc g--cgcuaac ccguccauca aaac-ccau- 4381 gcg--ugg-c uc--ac---- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ----gcgguc cgcugcgggg uggugu---c gcu(ucgc)g gcg---acgu caucccgccg 4621 gcagggcccg gguccgugug ggcgguaggg uucggcgu-- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ----ccguG- CU-------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------U CUUAGAGG]- --|------- ---------- GACU-Gcu-g cg-c(----- 5041 --gccua-)g ccag-C-GGA AGUU-UGAGG CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UG A|UGCC|CU- 5221 U-AGA-UGUU CUGG-GCNGC A-CGCGCGCU ACACU--G-A UUAAU----- ---------- 5281 ---(------ ----)[ccaa cgagucc--- ---------- --g----cuu caaucga-gg 5341 cguggugc-u ggugcgggg( -ucaa)accc gugccgu-gc aucgcugucc ucgau----- 5401 cgcgccu-gg gcc(gaua-) ggucc----g gguaau-cuu ugcaaa]--- ---------- 5461 -------uuu aau-c-g--- uGCU-G-GGG AUAGAUCAU( UGUAAUUA)U UGAUCUUC-A 5521 ACGAGG-AAU U--CCUAGUA AG-CGC-GAG (-UCAUCAG- )CUCGCGU-U -GAUUACG-- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUCC-U-A CC-GAU--UG AA-UGGucc- 5641 ggu-gaaa-- ucc-ucgga- gccg-uggc- cucu-a---c gcaa-uccgg ---------- 5701 -------(gc aa----)ccg gg-uugugag guc------- ---------- --uc-ccc-- 5761 uuuugg-cgg -cugaa|guc -gauugaacc nn-nnn-n-n nnnn-nnnnn nn-nnnn-n- 5821 nnnnnnnnnn nn-------- -----n-n-n nnnnnn(nnn n)nnnnnnnn nnnnnnn--- 5881 --nnn----- -------~|| ||| // LOCUS A.castel.5 5903 bp RNA RNA 11-JAN-191 DEFINITION Acanthamoeba castellanii CDC:0786:V042. ACCESSION No information KEYWORDS No information. SOURCE Acanthamoeba castellanii CDC:0786:V042. ORGANISM Acanthamoeba castellanii CDC:0786:V042. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: U07403 LOCUS ACU07403 2282 bp DNA INV 02-JUL-1994 DEFINITION Acanthamoeba castellanii CDC:0786:V042 18S rRNA gene. ACCESSION U07403 KEYWORDS . SOURCE amoeba ORGANISM Acanthamoeba castellanii Eucaryotae; Protozoa; Sarcomastigophora; Sarcodina; Rhizopoda; Lobosa; Amoebida; Acanthamoeba. REFERENCE 1 (bases 1 to 2282) AUTHORS Gast,R.J., Ledee,D.R., Fuerst,P.A. and Byers,T.J. TITLE Population Structure of Acanthamoeba: Nuclear srRNA Gene Phylogenetic Analysis of 18 Group II and III Isolates JOURNAL Unpublished STANDARD full automatic REFERENCE 2 (bases 1 to 2282) AUTHORS Gast,R.J. TITLE Direct Submission JOURNAL Submitted (05-MAR-1994) Rebecca J. Gast, The Ohio State University, Molecular Genetics, 484 West 12th Avenue, Columbus, OH 43210, USA STANDARD full automatic COMMENT NCBI gi: 507399 FEATURES Location/Qualifiers primer_bind 1..23 /citation=[1] /note="PCR amplification primer" rRNA 24..2259 /product="18S ribosomal RNA" /citation=[1] primer_bind 2260..2282 /citation=[1] /note="PCR amplification primer" source 1..2282 /strain="CDC:0786:V042" /organism="Acanthamoeba castellanii" BASE COUNT 524 a 541 c 652 g 564 t 1 others ORIGIN BASE COUNT 524 a 541 c 652 g 564 t 3622 others ORIGIN 1 |--------- -----CGACU GGU(UGA)UC CU|GCCAGU- A-GUCA-UAU --GCUUGUCU 61 CAAA|-GAUU AA-GCCAUGC A-UGUCU-AA GU|------- |-------(- ---)[----- 121 ---------- --------au aagcuuguuu ---------- -au-a-cggc gag]------ 181 -----|---A CU|G-CGGA- UGGCU-CAUU AAAU-cagu- uau-aguu-- ----uauuug 241 augg<----- ---------- -----ucuc- --------u- --uuugucuu --uuuuuacc 301 u>ACUUGG-A UAACCGUGG( -U-AAUU)CU AGAGC-UAA- UACAUG---- ----(----) 361 ---------- -------(-- --)--|---- -- -gauucauuc -aa|auuucu gc|--CCU-A UCA--ACUUU C-GAUGGUA- 1141 GG(-AUAGAG G)CCU-ACCA U-|GGUCG-U AAC|GGGU-A A-CGGA|GAA -U-(UAGG-) 1201 GUU-CGAUU- CCG|GAGAGG G-AGCC(U-G AGAAAU)GGC UACC-ACUUC (UAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GC- AAAUU-ACCC -AAUCCC-G( ---aca--)C 1321 GGGG-A-GGU -|A|GUGACA AUAA-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AA CAAUACAGG- CGCUC(---- --gauaa)GA GU-CU-UGUA A-UUGGAAU- 1501 ------GAGU ----ACAAUU -UAAA--CCC C-----UU-A A-CGA-GUAA C---->AAUU 1561 GGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCCAA 1621 U-AGCGUA|U AUUAA--AGU UGUUG-CAG| UUA--AAAAG CUCGUAGUUG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 gauc------ ---------- ---------- ---------- ---------- ---------- 1801 ---------- --------u- --agggacgc g-cauuucaa g---cgcccg ugucgucggg 1861 ucaa------ ---------- -----acc-g gcgac-ugc- guuggcgu-- --ugc-gggc 1921 u--------c gguccgucgg ugccccacaa agg--gcu-- -aucggcgug ucaaccggcc 1981 cgcccg---- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- --uccccucc 2161 uucuggauu- ---------- ---------- -cccguuccu gcua------ ---------- 2221 ---uugaguu aguggggacg ucacaggg-g gcuc-aucgu cgucgug-ca aac------- 2281 -ggcggcggu g-ggucccug gggcccagau c--------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- -GUUUACCGU 2521 G-AAAA--AA UUAG-A-GUG UUCAA-AG-C AGGCagauc- -------c-- ---------- 2581 --a------- ---auuuucu gccacc-GAA UACAU-UAGC AUGGGA|UA- AUGGAA-UAG 2641 GA---cccug uc-------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- --------cu ccua|-UUUU 2821 -CA-GUUGGU -UU-uggcag c-gcgAGGA- CUA--GGGUA A--UGAUUAA UA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGA|UAGU ---------- 3001 --UGGGGGCA UU|--AAUAU UUAAUUG-UC -AGAG(GU-G AAA---)UUC U-UGGA-U-U 3061 UAUGA-AAG- A-UUAACU-U CUGC(-GAAA )--GC|A--- UCUGCC-AA| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUG ---UUUUCAU -UAA-U|CA- A-GAACGAAA 3301 GUUAGGGGA- UCGAAGACG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CGUAG|UCU UA--ACC-AU AAACGAUGCC GAC|CA|--- 3421 --gcgau-ua gga-g-a--- ----(----- ---------) -cguugaaua caaaacacca 3481 ccaucggc-g cggucguccu ug---gcguc ggucu(-uuc g-)gggccgg cgc---gggg 3541 gcggcuuag- -cccgguggc --accgguga augac----- ---------- ---------- 3601 ---------- ---------u c-cc-cua-g -c-agcuu-- ---------- ----guGA(- 3661 GAAA-)UCAU -AAGUC-UUU GGGU|-U|C- CGGGGGGAGU AU--GG-UC( --GCAA-)GG 3721 CUG-AAACUU -AAAG--GAA -UUG|AC-GG -AA-GGGCA- -CCAC-CAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --A-GU|-GG 4021 AGCCUGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--GAA ACUUACCAGG UC[cgg-aca 4081 uagu-aagga uu-----gac aga(uugaua g-c)------ ucuuu----- cuu-gauu-c 4141 uauggg---- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU-G-CAUG |GCC|GU-UC UUA|GUUGG- U|GGA(-GUG 4261 A-)UUUGUC- -UGG(UU-AA UU)CCGUUA- AC-GAACGAG ACCUU-AA|- ---------- 4321 ------(--- --)[CCU-GC UAAAUAugcc g--cgcuaac ccguccauca aaac-ccac- 4381 gcg--cgg-c uc--ac---- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ----gcgguc cgcugcgggg uggugu---c gcu(ucgc)g gcg---acgu caucccgccg 4621 gcagggcccg gguccgugug ggcgguaggg uucggcgu-- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ----ccguG- CU-------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------U CUUAGAGG]- --|------- ---------- GACU-Gcu-g cg-c(----- 5041 --gccua-)g ccag-C-GGA AGUN-UGAGG CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UG A|UGCC|CU- 5221 U-AGA-UGUU CUGG-GCCGC A-CGCGCGCU ACACU--G-A UUAAU----- ---------- 5281 ---(------ ----)[ccaa cgagucc--- ---------- --g----cuu caaucga-gg 5341 cgcgaugc-- cgugcgggg( -ucaa)accc gcacu---gc gucgcugucc ucgau----- 5401 cgcgccu-gg gcc(gaua-) ggucc----g gguaau-cuu ugcaaa]--- ---------- 5461 -------uuu aau-c-g--- uGCU-G-GGG AUAGAUCAU( UGUAAUUA)U UGAUCUUC-A 5521 ACGAGG-AAU U--CCUAGUA AG-CGC-GAG (-UCAUCAG- )CUCGCGU-U -GAUUACG-- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUCC-U-A CC-GAU--UG AA-UGGucc- 5641 ggu-gaaa-- ucc-ucgga- gccg-uggc- cucu-a---c gcaa-uccgg ---------- 5701 -------(gc aa----)ccg gg-uugugag guc------- ---------- --uc-ccc-- 5761 uuuugg-cgg -cgaa-|guc -gauugaacc uu-acc-a-u uuag-AGGAA GG-AGAA-G- 5821 UCGUAACAAG GU-------- -----C-U-C CGUAGG(UGA A)-CUGCGGA AGGAUCA--- 5881 --gga----- -------~|| ||| // LOCUS A.castel.6 5903 bp RNA RNA 11-JAN-191 DEFINITION Acanthamoeba castellanii CDC:0981:V006. ACCESSION No information KEYWORDS No information. SOURCE Acanthamoeba castellanii CDC:0981:V006. ORGANISM Acanthamoeba castellanii CDC:0981:V006. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: U07400 LOCUS ACU07400 2212 bp DNA INV 02-JUL-1994 DEFINITION Acanthamoeba castellanii CDC:0981:V006 18S rRNA gene. ACCESSION U07400 KEYWORDS . SOURCE amoeba ORGANISM Acanthamoeba castellanii Eucaryotae; Protozoa; Sarcomastigophora; Sarcodina; Rhizopoda; Lobosa; Amoebida; Acanthamoeba. REFERENCE 1 (bases 1 to 2212) AUTHORS Gast,R.J., Ledee,D.R., Fuerst,P.A. and Byers,T.J. TITLE Population Structure of Acanthamoeba: Nuclear srRNA Gene Phylogenetic Analysis of 18 Group II and III Isolates JOURNAL Unpublished STANDARD full automatic REFERENCE 2 (bases 1 to 2212) AUTHORS Gast,R.J. TITLE Direct Submission JOURNAL Submitted (05-MAR-1994) Rebecca J. Gast, The Ohio State University, Molecular Genetics, 484 West 12th Avenue, Columbus, OH 43210, USA STANDARD full automatic COMMENT NCBI gi: 507396 FEATURES Location/Qualifiers primer_bind <1..11 /citation=[1] /note="PCR amplification primer; the first 12 predicted bases were not sequenced" rRNA 12..2189 /product="18S ribosomal RNA" /citation=[1] /note="the predicted 57 bases at the 3' end of the 18S gene are undetermined for this isolate" source 1..2212 /strain="CDC:0981:V006" /organism="Acanthamoeba castellanii" BASE COUNT 522 a 506 c 615 g 569 t ORIGIN BASE COUNT 522 a 506 c 615 g 569 t 3691 others ORIGIN 1 |--------- ---------- ---(---)-C CU|GCCAGU- A-GUCA-UAU --GCUUGUCU 61 CAAA|-GAUU AA-GCCAUGC A-UGUCU-AA GU|------- |-------(- ---)[----- 121 ---------- --------au aagcuuguuu ---------- -au-a-cggc gag]------ 181 -----|---A CU|G-CGGA- UGGCU-CAUU AAAU-cagu- uau-aguu-- ----uauuug 241 augg<----- ---------- -----ucuc- --------u- --uuuuucu- --uuuuuacc 301 u>ACUUGG-A UAACCGUGG( -U-AAUU)CU AGAGC-UAA- UACAUG---- ----(----) 361 ---------- -------(-- --)--|---- -- -gauucauuc -aa|auuucu gc|--CCU-A UCA--ACUUU C-GAUGGUA- 1141 GG(-AUAGAG G)CCU-ACCA U-|GGUCG-U AAC|GGGU-A A-CGGA|GAA -U-(UAGG-) 1201 GUU-CGAUU- CCG|GAGAGG G-AGCC(U-G AGAAAU)GGC UACC-ACUUC (UAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GC- AAAUU-ACCC -AAUCCC-G( ---aca--)C 1321 GGGG-A-GGU -|A|GUGACA AUAA-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AA CAAUACAGG- CGCUC(---- --gacaa)GA GU-CU-UGUA A-UUGGAAU- 1501 ------GAGU ----ACAAUU -UAAA--CCC C-----UU-A A-CGA-GUAA C---->AAUU 1561 GGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCCAA 1621 U-AGCGUA|U AUUAA--AGU UGUUG-CAG| UUA--AAAAG CUCGUAGUUG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 gau------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- --------uu --agggacgc g-cauu-caa g---cguccg caucaucggg 1861 ucaa------ ---------- -----acc-g gugg--ugc- gugg-cgu-- --ugc-gggc 1921 u--------c gguccgugg- aggacca--- ---------- -----gcgug ucaaccggcc 1981 cgcccg---- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- --uccccucc 2161 uucuggauu- ---------- ---------- -cccguuccu gcua------ ---------- 2221 ---uugaguu aguggggacg ucacaggg-g aucg-cucau cgggguggc- ------aaca 2281 cuccgguggg u-ggucucug gggcccagau c--------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- -GUUUACCGU 2521 G-AAAA--AA UUAG-A-GUG UUCAA-AG-C AGGCagauu- -------u-- ---------- 2581 --u------- --accauucu gccacc-GAA UACAU-UAGC AUGGGA|UA- AUGGAA-UAG 2641 GA---cccug uc-------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- --------cu ccua|-UUUU 2821 -CC-GCGUUG -GU-u-uu-u ----gAGGA- CCA--GGGUA A--UGAUUAA UA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGA|UAGU ---------- 3001 --UGGGGGCA UU|--AAUAU UUAAUUG-UC -AGAG(GU-G AAA---)UUC U-UGGA-U-U 3061 UAUGA-AAG- A-UUAACU-U CUGC(-GAAA )--GC|A--- UCUGCC-AA| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUG ---UUUUCAU -UAA-U|CA- A-GAACGAAA 3301 GUUAGGGGA- UCGAAGACG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CGUAG|UCU UA--ACC-AU AAACGAUGCC GAC|CA|--- 3421 --gcgau-ua gga-g-a--- ----(----- ---------) -cguugaaua caaaacacca 3481 ccaucaggca guggggucgu gc-uucgcuu uuccg(-gca a-)cggggaa guggag--gc 3541 ggucucauuc cccugauggc ---ccgguga augac----- ---------- ---------- 3601 ---------- ---------u c-cc-cua-g -c-agcuu-- ---------- ----guGA(- 3661 GAAA-)UCAU -AAGUC-UUU GGGU|-U|C- CGGGGGGAGU AU--GG-UC( --GCAA-)GG 3721 CUG-AAACUU -AAAG--GAA -UUG|AC-GG -AA-GGGCA- -CCAC-CAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --A-GU|-GG 4021 AGCCUGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--GAA ACUUACCAGG UC[cgg-aca 4081 uagu-aagga uu-----gac aga(uugaua g-c)------ ucuuu----- cuu-gauu-c 4141 uauggg---- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU-G-CAUG |GCC|GU-UC UUA|GUUGG- U|GGA(-GUG 4261 A-)UUUGUC- -UGG(UU-AA UU)CCGUUA- AC-GAACGAG ACCUU-AA|- ---------- 4321 ------(--- --)[CCU-GC UAAAUAugcc g--cgcuaac ccguccauca aaac-ccau- 4381 gcg--ugg-c uc--ac---- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ----gagguc cgcugcgugg uggucau-cg cug(gcaa)c ggcg-guggu caucacgccg 4621 gcagggcccg gguccgugug ggcgguaggg uucggcgu-- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ----cuguG- CU-------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------U CUUAGAGG]- --|------- ---------- GACU-Gcu-g cg-c(----- 5041 --gccua-)g ucag-C-GGA AGUU-UGAGG CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UG A|UGCC|CU- 5221 U-AGA-UGUU CUGG-GCCGC A-CGCGCGCU ACACU--G-A UUAAU----- ---------- 5281 ---(------ ----)[ccaa cgagucc--- ---------- --g----cuu caaucga-gg 5341 cgcggugcg- --gucaucg( -gcaa)cggu ggcgug--uc gucgcugucc ucgau----- 5401 cgcgccu-gg gcc(gaua-) ggucc----g gguaau-cuu ugcaaa]--- ---------- 5461 -------uuu aau-c-g--- uGCU-G-GGG AUAGAUCAU( UGUAAUUA)U UGAUCUUC-A 5521 ACGAGG-AAU U--CCUAGUA AG-CGC-GAG (-UCAUCAG- )CUCGCGU-U -GAUUACG-- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUCC-U-A CC-GAU--UG AA-UGGucc- 5641 ggu-gaaa-- ucc-ucgga- gccg-uggc- cucu-a---c gcaa-uccgg ---------- 5701 -------(gc aa----)ccg gg-uugugag gucucucgug ucagcgaugg cacg-gga-- 5761 uccug--cgg -caag-|uc- -gauugaacc uu-acc-a-u uunn-nnnnn nn-nnnn-n- 5821 nnnnnnnnnn nn-------- -----n-n-n nnnnnn(nnn n)nnnnnnnn nnnnnnn--- 5881 --nnn----- -------~|| ||| // LOCUS A.castel.7 5903 bp RNA RNA 11-JAN-191 DEFINITION Acanthamoeba castellanii. ACCESSION No information KEYWORDS No information. SOURCE Acanthamoeba castellanii. ORGANISM Acanthamoeba castellanii. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: U07413 LOCUS ACU07413 2290 bp DNA INV 02-JUL-1994 DEFINITION Acanthamoeba castellanii Castellani ATCC 50374 18S rRNA gene. ACCESSION U07413 KEYWORDS . SOURCE amoeba ORGANISM Acanthamoeba castellanii Eucaryotae; Protozoa; Sarcomastigophora; Sarcodina; Rhizopoda; Lobosa; Amoebida; Acanthamoeba. REFERENCE 1 (bases 1 to 2290) AUTHORS Gast,R.J., Ledee,D.R., Fuerst,P.A. and Byers,T.J. TITLE Population Structure of Acanthamoeba: Nuclear srRNA Gene Phylogenetic Analysis of 18 Group II and III Isolates JOURNAL Unpublished STANDARD full automatic REFERENCE 2 (bases 1 to 2290) AUTHORS Gast,R.J. TITLE Direct Submission JOURNAL Submitted (05-MAR-1994) Rebecca J. Gast, The Ohio State University, Molecular Genetics, 484 West 12th Avenue, Columbus, OH 43210, USA STANDARD full automatic COMMENT NCBI gi: 507409 FEATURES Location/Qualifiers primer_bind 1..23 /citation=[1] /note="PCR amplification primer" rRNA 24..2267 /product="18S ribosomal RNA" /citation=[1] primer_bind 2268..2290 /citation=[1] /note="PCR amplification primer" source 1..2290 /strain="Castellani ATCC 50374" /organism="Acanthamoeba castellanii" BASE COUNT 528 a 542 c 653 g 567 t ORIGIN BASE COUNT 528 a 542 c 653 g 567 t 3613 others ORIGIN 1 |--------- -----CGACU GGU(UGA)UC CU|GCCAGU- A-GUCA-UAU --GCUUGUCU 61 CAAA|-GAUU AA-GCCAUGC A-UGUCU-AA GU|------- |-------(- ---)[----- 121 ---------- --------au aagcuuguuu ---------- -au-a-cggc gag]------ 181 -----|---A CU|G-CGGA- UGGCU-CAUU AAAU-cagu- uau-aggu-- ----uauuug 241 augg<----- ---------- -----ucuc- --------u- --uuugucuu --uuuuuacc 301 u>ACUUGG-A UAACCGUGG( -U-AAUU)CU AGAGC-UAA- UACAUG---- ----(----) 361 ---------- -------(-- --)--|---- -- -gauucauuc -aa|auuucu gc|--CCU-A UCA--ACUUU C-GAUGGUA- 1141 GG(-AUAGAG G)CCU-ACCA U-|GGUCG-U AAC|GGGU-A A-CGGA|GAA -U-(UAGG-) 1201 GUU-CGAUU- CCG|GAGAGG G-AGCC(U-G AGAAAU)GGC UACC-ACUUC (UAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GC- AAAUU-ACCC -AAUCCC-G( ---aca--)C 1321 GGGG-A-GGU -|A|GUGACA AUAA-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AA CAAUACAGG- CGCUC(---- --gauaa)GA GU-CU-UGUA A-UUGGAAU- 1501 ------GAGU ----ACAAUU -UAAA--CCC C-----UU-A A-CGA-GUAA C---->AAUU 1561 GGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCCAA 1621 U-AGCGUA|U AUUAA--AGU UGUUG-CAG| UUA--AAAAG CUCGUAGUUG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 gauc------ ---------- ---------- ---------- ---------- ---------- 1801 ---------- --------u- --agggacgc g-cauuucaa g---cgcccg ugucgucggg 1861 ucaa------ ---------- -----acc-g gcgac-ugc- guuggcgu-- --ugc-gggc 1921 u--------c gguccgucgg ugccccacaa agg--gcu-- -acuggcgug ucaaccggcc 1981 cgcccg---- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- --uccccucc 2161 uucuggauu- ---------- ---------- -cccguuccu gcua------ ---------- 2221 ---uugaguu aguggggacg ucacaggg-g gcuc-aucgu cgugcggcgu caaaac--cg 2281 uggcggcggu g-ggucccug gggcccagau c--------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- -GUUUACCGU 2521 G-AAAA--AA UUAG-A-GUG UUCAA-AG-C AGGCagauc- -------c-- ---------- 2581 --a------- ---auuuucu gccacc-GAA UACAU-UAGC AUGGGA|UA- AUGGAA-UAG 2641 GA---cccug uc-------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- --------cu ccua|-UUUU 2821 -CA-GUUGGU -UU-uggcag c-gcgAGGA- CUA--GGGUA A--UGAUUAA UA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGA|UAGU ---------- 3001 --UGGGGGCA UU|--AAUAU UUAAUUG-UC -AGAG(GU-G AAA---)UUC U-UGGA-U-U 3061 UAUGA-AAG- A-UUAACU-U CUGC(-GAAA )--GC|A--- UCUGCC-AA| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUG ---UUUUCAU -UAA-U|CA- A-GAACGAAA 3301 GUUAGGGGA- UCGAAGACG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CGUAG|UCU UA--ACC-AU AAACGAUGCC GAC|CA|--- 3421 --gcgau-ua gga-g-a--- ----(----- ---------) -cguugaaua caaaacacca 3481 ccaucggc-g cggucguccu ug--gcgucg guccu(-uca c-)ggggccg gcgc--gagg 3541 gcggcuuag- -cccgguggc --accgguga augac----- ---------- ---------- 3601 ---------- ---------u c-cc-cua-g -c-agcuu-- ---------- ----guGA(- 3661 GAAA-)UCAU -AAGUC-UUU GGGU|-U|C- CGGGGGGAGU AU--GG-UC( --GCAA-)GG 3721 CUG-AAACUU -AAAG--GAA -UUG|AC-GG -AA-GGGCA- -CCAC-CAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --A-GU|-GG 4021 AGCCUGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--GAA ACUUACCAGG UC[cgg-aca 4081 uagu-aagga uu-----gac aga(uugaua g-c)------ ucuuu----- cuu-gauu-c 4141 uauggg---- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU-G-CAUG |GCC|GU-UC UUA|GUUGG- U|GGA(-GUG 4261 A-)UUUGUC- -UGG(UU-AA UU)CCGUUA- AC-GAACGAG ACCUU-AA|- ---------- 4321 ------(--- --)[CCU-GC UAAAUAugcc g--cgcuagc ccguccauca aaac-ccau- 4381 gcg--ugg-c uc--ac---- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ----gcgguc cgcugcgggg uggugu---c acu(ucgc)g gcg---acgu caucccgccg 4621 gcagggcccg gguccgugug ggcgguaggg uucggcgu-- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ----ccguG- CU-------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------U CUUAGAGG]- --|------- ---------- GACU-Gcu-g cg-c(----- 5041 --gccua-)g ccag-C-GGA AGUU-UGAGG CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UG A|UGCC|CU- 5221 U-AGA-UGUU CUGG-GCCGC A-CGCGCGCU ACACU--G-A UUAAU----- ---------- 5281 ---(------ ----)[ccaa cgagucc--- ---------- --g----cuu caaucga-gg 5341 cgcgaugc-- -cguugggg( -ucaa)accc aacu----gc gucgcugucc ucgau----- 5401 cgcgccu-gg gcc(gaua-) ggucc----g gguaau-cuu ugcaaa]--- ---------- 5461 -------uuu aau-c-g--- uGCU-G-GGG AUAGAUCAU( UGUAAUUA)U UGAUCUUC-A 5521 ACGAGG-AAU U--CCUAGUA AG-CGC-GAG (-UCAUCAG- )CUCGCGU-U -GAUUACG-- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUCC-U-A CC-GAU--UG AA-UGGucc- 5641 ggu-gaaa-- ucc-ucgga- gccg-uggc- cucu-a---c gcaa-uccgg ---------- 5701 -------(gc aa----)ccg gg-uugugag guc------- ---------- --uc-ccc-- 5761 uuuugg-cgg -cgaa-|guc -gauugaacc uu-acc-a-u uuag-AGGAA GG-AGAA-G- 5821 UCGUAACAAG GU-------- -----C-U-C CGUAGG(UGA A)CCUGCGAA AGGAUCA--- 5881 --gga----- -------~|| ||| // LOCUS A.castel.8 5903 bp RNA RNA 11-JAN-191 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: U07414 LOCUS ACU07414 2278 bp DNA INV 02-JUL-1994 DEFINITION Acanthamoeba castellanii Ma ATCC 50370 18S rRNA gene. ACCESSION U07414 KEYWORDS . SOURCE amoeba ORGANISM Acanthamoeba castellanii Eucaryotae; Protozoa; Sarcomastigophora; Sarcodina; Rhizopoda; Lobosa; Amoebida; Acanthamoeba. REFERENCE 1 (bases 1 to 2278) AUTHORS Gast,R.J., Ledee,D.R., Fuerst,P.A. and Byers,T.J. TITLE Population Structure of Acanthamoeba: Nuclear srRNA Gene Phylogenetic Analysis of 18 Group II and III Isolates JOURNAL Unpublished STANDARD full automatic REFERENCE 2 (bases 1 to 2278) AUTHORS Gast,R.J. TITLE Direct Submission JOURNAL Submitted (05-MAR-1994) Rebecca J. Gast, The Ohio State University, Molecular Genetics, 484 West 12th Avenue, Columbus, OH 43210, USA STANDARD full automatic COMMENT NCBI gi: 507410 FEATURES Location/Qualifiers primer_bind 1..23 /citation=[1] /note="PCR amplification primer" rRNA 24..2255 /product="18S ribosomal RNA" /citation=[1] primer_bind 2256..2278 /citation=[1] /note="PCR amplification primer" source 1..2278 /strain="Ma ATCC 50370" /organism="Acanthamoeba castellanii" BASE COUNT 529 a 533 c 644 g 572 t ORIGIN BASE COUNT 529 a 533 c 644 g 572 t 3625 others ORIGIN 1 |--------- -----CGACU GGU(UGA)UC CU|GCCAGU- A-GUCA-UAU --GCUUGUCU 61 CAAA|-GAUU AA-GCCAUGC A-UGUCU-AA GU|------- |-------(- ---)[----- 121 ---------- --------au aagcuuguuu ---------- -au-a-cggc gag]------ 181 -----|---A CU|G-CGGA- UGGCU-CAUU AAAU-cagu- uau-aguu-- ----uauuug 241 augg<----- ---------- -----ucuc- --------u- --uuugucuu --uuuuuacc 301 u>ACUUGG-A UAACCGUGG( -U-AAUU)CU AGAGC-UAA- UACAUG---- ----(----) 361 ---------- -------(-- --)--|---- -- -gauucauuc -aa|auuucu gc|--CCU-A UCA--ACUUU C-GAUGGUA- 1141 GG(-AUAGAG G)CCU-ACCA U-|GGUCG-U AAC|GGGU-A A-CGGA|GAA -U-(UAGG-) 1201 GUU-CGAUU- CCG|GAGAGG G-AGCC(U-G AGAAAU)GGC UACC-ACUUC (UAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GC- AAAUU-ACCC -AAUCCC-G( ---aca--)C 1321 GGGG-A-GGU -|A|GUGACA AUAA-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AA CAAUACAGG- CGCUC(---- --gauaa)GA GU-CU-UGUA A-UUGGAAU- 1501 ------GAGU ----ACAAUU -UAAA--CCC C-----UU-A A-CGA-GUAA C---->AAUU 1561 GGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCCAA 1621 U-AGCGUA|U AUUAA--AGU UGUUG-CAG| UUA--AAAAG CUCGUAGUUG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 gauc------ ---------- ---------- ---------- ---------- ---------- 1801 ---------- --------u- --agggacgc g-cauuucaa g---cgcccg ugucguuggg 1861 ucaa------ ---------- -----acc-a gcgac-ugc- guuggcgu-- --ugc-gggc 1921 u--------c gguccgucgg ug--cccaca aag----c-- -accggcgug ucaaccggcc 1981 cgcccg---- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- --uccccucc 2161 uucuggauu- ---------- ---------- -cccguuccu gcua------ ---------- 2221 ---uugaguu aguggggacg ucacaggg-a gcuc-aucgu cgucagcaau ---------- 2281 -gccggcggu g-gguuccug gggcccagau c--------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- -GUUUACCGU 2521 G-AAAA--AA UUAG-A-GUG UUCAA-AG-C AGGCagauc- -------c-- ---------- 2581 --a------- ---auuuucu gccacc-GAA UACAU-UAGC AUGGGA|UA- AUGGAA-UAG 2641 GA---cccug uc-------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- --------cu ccua|-UUUU 2821 -CA-GUUGGU -UU-uggcag c-gcgAGGA- CUA--GGGUA A--UGAUUAA UA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGA|UAGU ---------- 3001 --UGGGGGCA UU|--AAUAU UUAAUUG-UC -AGAG(GU-G AAA---)UUC U-UGGA-U-U 3061 UAUGA-AAG- A-UUAACU-U CUGC(-GAAA )--GC|A--- UCUGCC-AA| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUG ---UUUUCAU -UAA-U|CA- A-GAACGAAA 3301 GUUAGGGGA- UCGAAGACG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CGUAG|UCU UA--ACC-AU AAACGAUGCC GAC|CA|--- 3421 --gcgau-ua gga-g-a--- ----(----- ---------) -cguugaaua caaaacacca 3481 ccaucggu-g cggucguccu ug---gcguc ucggu(-uuc g-)gccgggg ugc---gggg 3541 acggcuuag- -cccgguggc --accgguga augac----- ---------- ---------- 3601 ---------- ---------u c-cc-cua-g -c-agcuu-- ---------- ----guGA(- 3661 GAAA-)UCAU -AAGUC-UUU GGGU|-U|C- CGGGGGGAGU AU--GG-UC( --GCAA-)GG 3721 CUG-AAACUU -AAAG--GAA -UUG|AC-GG -AA-GGGCA- -CCAC-CAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --A-GU|-GG 4021 AGCCUGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--GAA ACUUACCAGG UC[cgg-aca 4081 uagu-aagga uu-----gac aga(uugaua g-c)------ ucuuu----- cuu-gauu-c 4141 uauggg---- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU-G-CAUG |GCC|GU-UC UUA|GUUGG- U|GGA(-GUG 4261 A-)UUUGUC- -UGG(UU-AA UU)CCGUUA- AC-GAACGAG ACCUU-AA|- ---------- 4321 ------(--- --)[CCU-GC UAAAUAugcc g--cgcuaac ccguccauca aaac-ccau- 4381 gcg--ugg-c uc--ac---- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ----gcgguc cgcugcgggg uggugu---c gcu(ucgc)g gcg---augu caucccgccg 4621 gcagggcccg gguccgugug ggcgguaggg uucggcgu-- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ----ccguG- CU-------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------U CUUAGAGG]- --|------- ---------- GACU-Gcu-g cg-c(----- 5041 --gccua-)g ccag-C-GGA AGUU-UGAGG CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UG A|UGCC|CU- 5221 U-AGA-UGUU CUGG-GCCGC A-CGCGCGCU ACACU--G-A UUAAU----- ---------- 5281 ---(------ ----)[ccaa cgagucc--- ---------- --g----cuu caaucga-gg 5341 cgcgaugc-- -cguugggg( -ucaa)accc aacu---ggc gucgcugucc ucgau----- 5401 cgcgccu-gg gcc(gaua-) ggucc----g gguaau-cuu ugcaaa]--- ---------- 5461 -------uuu aau-c-g--- uGCU-G-GGG AUAGAUCAU( UGUAAUUA)U UGAUCUUC-A 5521 ACGAGG-AAU U--CCUAGUA AG-CGC-GAG (-UCAUCAG- )CUCGCGU-U -GAUUACG-- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUCC-U-A CC-GAU--UG AA-UGGucc- 5641 ggu-gaaa-- ucc-ucgga- gccg-uggc- cucu-a---c gcaa-uccgg ---------- 5701 -------(gc aa----)ccg gg-uugugag guc------- ---------- --uc-ccc-- 5761 uuuugg-cgg -cgaa-|guc -gauugaacc uu-acc-a-u uuag-AGGAA GG-AGAA-G- 5821 UCGUAACAAG GU-------- -----C-U-C CGUAGG(UGA A)CCUGCGGA AGGAUCA--- 5881 --gga----- -------~|| ||| // LOCUS A.griffini 5903 bp RNA RNA 11-JAN-191 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: U07412 LOCUS AGU07412 2812 bp DNA INV 02-JUL-1994 DEFINITION Acanthamoeba griffini S-7 ATCC 30731 18S rRNA gene. ACCESSION U07412 KEYWORDS . SOURCE Acanthamoeba griffini ORGANISM Acanthamoeba griffini Eucaryotae; Protozoa; Sarcomastigophora; Sarcodina; Rhizopoda; Lobosa; Amoebida; Acanthamoeba. REFERENCE 1 (bases 1 to 2812) AUTHORS Gast,R.J., Ledee,D.R., Fuerst,P.A. and Byers,T.J. TITLE Population Structure of Acanthamoeba: Nuclear srRNA Gene Phylogenetic Analysis of 18 Group II and III Isolates JOURNAL Unpublished STANDARD full automatic REFERENCE 2 (bases 1 to 519) AUTHORS Gast,R.J., Fuerst,P.A. and Byers,T.J. TITLE Discovery of group I introns in the nuclear small subunit ribosomal RNA genes of Acanthamoeba JOURNAL Nucleic Acids Res. (1993) In press STANDARD full automatic REFERENCE 3 (bases 1 to 2812) AUTHORS Gast,R.J. TITLE Direct Submission JOURNAL Submitted (05-MAR-1994) Rebecca J. Gast, The Ohio State University, Molecular Genetics, 484 West 12th Avenue, Columbus, OH 43210, USA STANDARD full automatic COMMENT NCBI gi: 507408 FEATURES Location/Qualifiers primer_bind 1..23 /citation=[1] /note="PCR amplification primer" rRNA join(24..638,1157..2789) /product="18S ribosomal RNA" /citation=[1] intron 639..1156 /citation=[2] /note="group I intron" primer_bind 2788..2812 /citation=[1] /note="PCR amplification primer" source 1..2812 /strain="S-7 ATCC 30731" /organism="Acanthamoeba griffini" BASE COUNT 711 a 622 c 757 g 722 t ORIGIN BASE COUNT 552 a 518 c 634 g 589 t 3610 others ORIGIN 1 |--------- -----CGACU GGU(UGA)UC CU|GCCAGU- A-GUCA-UAU --GCUUGUCU 61 CAAA|-GAUU AA-GCCAUGC A-UGUCU-AA GU|------- |-------(- ---)[----- 121 ---------- --------au aagcuuguuu ---------- -au-a-cggc gag]------ 181 -----|---A CU|G-CGGA- UGGCU-CAUU AAAU-cagu- uau-aguu-- ----uauuug 241 augg<----- ---------- -----ucuc- --------u- --uuugucgu uuugauuacc 301 u>ACUUGG-A UAACCGUGG( -U-AAUU)CU AGAGC-UAA- UACAUG---- ----(----) 361 ---------- -------(-- --)--|---- -- -gauucauuc -aa|auuucu gc|--CCU-A UCA--ACUUU C-GAUGGUA- 1141 GG(-AUAGAG G)CCU-ACCA U-|GGUCG-U AAC|GGGU-A A-CGGA|GAA -U-(UAGG-) 1201 GUU-CGAUU- CCG|GAGAGG G-AGCC(U-G AGAAAU)GGC UACC-ACUUC (UAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GC- AAAUU-ACCC -AAUCCC-G( ---aca--)C 1321 GGGG-A-GGU -|A|GUGACA AUAA-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AA CAAUACAGG- CGCUC(---- --gauaa)GA GU-CU-UGUA A-UUGGAAU- 1501 ------GAGU ----ACAAUU -UAAA--CCC C-----UU-A A-CGA-GUAA C---->AAUU 1561 GGAG|GG-CA A-GU-C-UGG U+G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCCAA 1621 U-AGCGUA|U AUUAA--AGU UGUUG-CAG| UUA--AAAAG CUCGUAGUUG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 gauc------ ---------- ---------- ---------- ---------- ---------- 1801 ---------- --------u- --agggacgc g-cauuucaa g---cgcucg ugucaucggg 1861 ucaa------ ---------- -----acc-g gugac-ugc- guuggcgu-- --ugc-gggc 1921 u--------c gguccgucgg ugucacuaaa a----gc--- -aucggcgug ucaaccggcc 1981 cgcccg---- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- --uccccucc 2161 uucuggauu- ---------- ---------- -cccguuccu gcua------ ---------- 2221 ---uugaguu aguggggacg ucacaggg-a gcuc-aucgu cgucag--ca augac----- 2281 -ggcg-cggu g-aguuccug gggcccagau c--------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- -GUUUACCGU 2521 G-AAAA--AA UUAG-A-GUG UUCAA-AG-C AGGCagauc- -------c-- ---------- 2581 --a------- ---auuuucu gccacc-GAA UACAU-UAGC AUGGGA|UA- AUGGAA-UAG 2641 GA---cccug uc-------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- --------cu ccua|-UUUU 2821 -CA-GUUGGU -UU-ugcc-- --gcgAGGA- CCA--GGGUA A--UGAUUAA UA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGA|UAGU ---------- 3001 --UGGGGGCA UU|--AAUAU UUAAUUG-UC -AGAG(GU-G AAA---)UUC U-UGGA-U-U 3061 UAUGA-AAG- A-UUAACU-U CUGC(-GAAA )--GC|A--- UCUGCC-AA| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUG ---UUUUCAU -UAA-U|CA- A-GAACGAAA 3301 GUUAGGGGA- UCGAAGACG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CGUAG|UCU UA--ACC-AU AAACGAUGCC GAC|CA|--- 3421 --gcgau-ua gga-g-a--- ----(----- ---------) -cguugaaua caaaacacca 3481 ccaugcgc-a uugcggucgu cu--uuguug ucgcu(caca a-)ggcggca ccgg--ggcg 3541 gcu---uag- cucgcauggc --accgguga augac----- ---------- ---------- 3601 ---------- ---------u c-cc-cua-g -c-agcuu-- ---------- ----guGA(- 3661 GAAA-)UCAU -AAGUC-UUU GGGU|-U|C- CGGGGGGAGU AU--GG-UC( --GCAA-)GG 3721 CUG-AAACUU -AAAG--GAA -UUG|AC-GG -AA-GGGUA- -CCAC-CAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --A-GU|-GG 4021 AGCCUGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--GAA ACUUACCAGG UC[cgg-aca 4081 uagu-aagga uu-----gac aga(uugaua g-c)------ ucuuu----- cuu-gauu-c 4141 uauggg---- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU-G-CAUG |GCC|GU-UC UUA|GUUGG- U|GGA(-GUG 4261 A-)UUUGUC- -UGG(UU-AA UU)CCGUUA- AC-GAACGAG ACCUU-AA|- ---------- 4321 ------(--- --)[CCU-GC UAAAUAugcc g--cgcuaac ccguccauca aaac-ccau- 4381 gcg--ugg-c uc--ac---- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ----gcgguc cgcugcauac caaugcugcc gcg(uucg)c gcgguggugu uguugugccg 4621 gcagggcccg ggcucguaug ggcgguaggg uucggcgu-- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ----ccguG- CU-------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------U CUUAGAGG]- --|------- ---------- GACU-Gcu-g cg-c(----- 5041 --gccua-)g ccag-C-GGA AGUU-UGAGG CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UG A|UGCC|CU- 5221 U-AGA-UGUU CUGG-GCCGC A-CGCGCGCU ACACU--G-A UUAAU----- ---------- 5281 ---(------ ----)[ccaa cgagucc--- ---------- --g----cuu caaucga-gg 5341 cguag-cg-- uaugugggg( -ucaa)accc augua---ug ucugcugucc ucgau----- 5401 cgcgccu-gg gcc(gaua-) ggucc----g gguaau-cuu ugcaaa]--- ---------- 5461 -------uuu aau-c-g--- uGCU-G-GGG AUAGAUCAU( UGUAAUUA)U UGAUCUUC-A 5521 ACGAGG-AAU U--CCUAGUA AG-CGC-GAG (-UCAUCAG- )CUCGCGU-U -GAUUACG-- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUCC-U-A CC-GAUu-UG AA-UGGucc- 5641 ggu-gaaa-- ucc-ucgga- gccg-uggc- cucu-a---c gcaa-uccgg ---------- 5701 -------(gc aa----)ccg gg-uugugag guc------- ---------u cuaa-cca-- 5761 cuuugg-cgg -cgaa-|guc -gauugaacc uu-acc-a-u uuag-AGGAA GG-AGAA-G- 5821 UCGUAACAAG GU-------- -----C-U-C CGUAGG(UGA A)CUGCGGAG -GGAUUA--- 5881 --gga----- -------~|| ||| // LOCUS A.palest.1 5903 bp RNA RNA 11-JAN-191 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: L09599 LOCUS ACASSR 2286 bp ds-DNA INV 28-JAN-1993 DEFINITION Acanthamoeba palestinensis small subunit ribosomal RNA gene sequence. ACCESSION L09599 KEYWORDS 16S-like rRNA; small subunit ribosomal RNA. SOURCE Acanthamoeba palestinensis (strain CCAP 1547/1) DNA. ORGANISM Acanthamoeba palestinensis Eukaryota; Animalia; Protozoa; Sarcomastigophora; Sarcodina; Rhizopoda; Lobosa; Gymnamoeba; Amoebida; Acanthopodina; Acanthamoebidae. REFERENCE 1 (bases 1 to 2286) AUTHORS Patterson,D.J., Sogin,M.L. and Medlin,L. TITLE (no title given) JOURNAL Unpublished (1993) STANDARD full automatic BASE COUNT 576 a 484 c 606 g 620 t ORIGIN BASE COUNT 576 a 484 c 606 g 620 t 3617 others ORIGIN 1 |--------- -----AACCU GGU(UGA)UC CU|GCCAGU- A-GUCA-UAU --GCUUGUCU 61 CAAA|-GAUU AA-GCCAUGC A-UGUCU-AA GU|------- |-------(- ---)[----- 121 ---------- --------au aagcuuguuu ---------- -au-a-cggc gag]------ 181 -----|---A CU|G-CGGA- UGGCU-CAUU AAAu-cagu- uau-aguu-- ----uauuug 241 augg<----- ---------- -----ucuc- --------u- --uuguucuu -cuuuuuacc 301 u>ACUUGG-A UAACCGUGG( -U-AAUU)CU AGAGC-UAA- UACAUG---- ----(----) 361 ---------- -------(-- --)--|---- -- -gauucauuc -aa|auuucu gc|--CCU-A UCA--ACUUU C-GAUGGUA- 1141 GG(-AUAGAG G)CCU-ACCA U-|GGUCG-U AAC|GGGU-A A-CGGA|GAA -U-(UAGG-) 1201 GUU-CGAUU- CCG|GAGAGG G-AGCC(U-G AGAAAU)GGC UACC-ACUUC (UAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GC- AAAUU-ACCC -AAUCCC-G( ---aca--)C 1321 GGGG-A-GGU -|A|GUGACA AUAA-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AA CAAUACAGG- CGCUC(---- --gauaa)GA GU-CU-UGUA A-UUGGAAU- 1501 ------GAGU ----ACAAUU -UAAA--CCC C-----UU-A A-CGA-GUAA C---->AAUU 1561 GGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCCAA 1621 U-AGCGUA|U AUUAA--AGU UGUUG-CAG| UUA--AAAAG CUCGUAGUUG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 gauc------ ---------- ---------- ---------- ---------- ---------- 1801 ---------- --------u- --agggacgc g-cauuuauu uaagcauccg ugucauuggg 1861 ucaa------ ---------- -----acu-g gugac-ugc- gugg-ug--- --ugc-gggc 1921 u--------c gguccauuag ucaucccaca agg--gug-- -auuagugug uuaaccggcc 1981 cgcccg---- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- --uccccucc 2161 uucuggauu- ---------- ---------- -cccguuccu gcua------ ---------- 2221 ---uugaguu aguggggacg ucacaggg-a gcuguaucau uggccuucac ---------g 2281 ggccaguggu acaguuucug gggcccagau c--------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- -GUUUACCGU 2521 G-AAAA--AA UUAG-A-GUG UUCAA-AG-C AGGCagauu- -------c-- ---------- 2581 --a------- ---auuuucu gccacc-GAA UACAU-UAGC AUGGGA|UA- AUGGAA-UAG 2641 GA---cccug uc-------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- --------cu ccua|-UCUU 2821 -CA-GUUGGU -UA-acuug- --uagAGGA- UCA--GGGUA A--UGAUUAA UA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGA|UAGU ---------- 3001 --UGGGGGCA UU|--AAUAU UUAAUUG-UC -AGAG(GU-G AAA---)UUC U-UGGA-U-U 3061 UAUGA-AAG- A-UUAACU-U CUGC(-GAAA )--GC|A--- UCUGCC-AA| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUG ---UUUUCAU -UAA-U|CA- A-GAACGAAA 3301 GUUAGGGGA- UCGAAGACG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CGUAG|UCU UA--ACC-AU AAACGAUGCC GAC|CA|--- 3421 --gcgau-ua gga-g-a--- ----(----- ---------) -cguugaaua caaaacacca 3481 ccauacau-a auuc------ ---aguacau ggcca(guca aa)ugguugu guauu----- 3541 ----guuug- --uguauggc --accgguga augac----- ---------- ---------- 3601 ---------- ---------u c-cc-cua-g -c-agcuu-- ---------- ----guGA(- 3661 GAAA-)UCAU -AAGUC-UUU GGGU|-U|C- CGGGGGGAGU AU--GG-UC( --GCAA-)GG 3721 CUG-AAACUU -AAAG--GAA -UUG|AC-GG -AA-GGGCA- -CCAC-CAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --A-GU|-GG 4021 AGCCUGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--GAA ACUUACCAGG UC[cgg-aca 4081 uagu-aagga uu-----gac aga(uugaua g-c)------ ucuuu----- cuu-gauu-c 4141 uauggg---- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU-G-CAUG |GCC|GU-UC UUA|GUUGG- U|GGA(-GUG 4261 A-)UUUGUC- -UGG(UU-AA UU)CCGUUA- AC-GAACGAG ACCUU-AA|- ---------- 4321 ------(--- --)[CCU-GC UAAAUaugcc g--cgcuaac ucguccauca aaac-ucau- 4381 aug--uga-c uc--ac---- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ----gcgguu cgcugcauau uagugc--ug cca(gcaa)u ggug--gugu uaauaugccg 4621 gcagggcccg gguucaugug agcgguagag uucggcgu-- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ----cugug- CU-------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------U CUUAGAGG]- --|------- ---------- GACU-Gcu-g cg-c(----- 5041 --gccua-)g ccag-C-GGA AGUU-UGAGG CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UG A|UGCC|CU- 5221 U-AGA-UGUU CUGG-GCCGC A-CGCGCGCU ACACU--G-A UUAAU----- ---------- 5281 ---(------ ----)[ccaa cgagucc--- ---------- --g----cuu caaucga-gg 5341 cguaauaug- --cgugggg( -ucaa)accu augu----au guugcugucc uugau----- 5401 cgcgccu-gg gcc(gaua-) ggucc----g gguaau-cuu ugcaaa]--- ---------- 5461 -------uuu aau-c-g--- uGCU-G-GGG AUAGAUCAU( UGUAAUUA)U UGAUCUUC-A 5521 ACGAGG-AAU U--CCUAGUA AG-CGC-GAG (-UCAUCAG- )CUCGCGU-U -GAUUACG-- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUCC-U-A CC-GAU--UG AA-UGGucc- 5641 ggu-gaaa-- ucc-ucgga- gccg-uggc- cucu-a---c gcaa-ucugg ---------- 5701 -------(gc aa----)ccg gg-uugugag gucaacggug gugugcaaac auca-ccu-- 5761 auuugg-cgg -cgaa-|guc -gauugaacc uu-acc-a-u uuag-AGGAA GG-AGAA-G- 5821 UCGUAACAAG GU-------- -----C-U-C CGUAGG(UGA A)CCUGCAGA AGGAUCA--- 5881 --A~~~~~~~ ~~~~~~~~|| ||| // LOCUS A.palest.2 5903 bp RNA RNA 11-JAN-191 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: U07411 LOCUS APU07411 2288 bp DNA INV 02-JUL-1994 DEFINITION Acanthamoeba palestinensis Reich ATCC 30870 18S rRNA gene. ACCESSION U07411 KEYWORDS . SOURCE Acanthamoeba palestinensis ORGANISM Acanthamoeba palestinensis Eucaryotae; Protozoa; Sarcomastigophora; Sarcodina; Rhizopoda; Lobosa; Amoebida; Acanthamoeba. REFERENCE 1 (bases 1 to 2288) AUTHORS Gast,R.J., Ledee,D.R., Fuerst,P.A. and Byers,T.J. TITLE Population Structure of Acanthamoeba: Nuclear srRNA Gene Phylogenetic Analysis of 18 Group II and III Isolates JOURNAL Unpublished STANDARD full automatic REFERENCE 2 (bases 1 to 2288) AUTHORS Gast,R.J. TITLE Direct Submission JOURNAL Submitted (05-MAR-1994) Rebecca J. Gast, The Ohio State University, Molecular Genetics, 484 West 12th Avenue, Columbus, OH 43210, USA STANDARD full automatic COMMENT NCBI gi: 507407 FEATURES Location/Qualifiers primer_bind 1..23 /citation=[1] /note="PCR amplification primer" rRNA 24..2265 /product="18S ribosomal RNA" /citation=[1] primer_bind 2266..2288 /citation=[1] /note="PCR amplification primer" source 1..2288 /strain="Reich ATCC 30870" /organism="Acanthamoeba palestinensis" BASE COUNT 574 a 484 c 609 g 620 t 1 others ORIGIN BASE COUNT 574 a 484 c 609 g 620 t 3616 others ORIGIN 1 |--------- -----CGACU GGU(UG-)UC CU|GCCAGU- A-GUCA-UAU --GCUUGUCU 61 CAAA|-GAUU AA-GCCAUGC A-UGUCU-AA GU|------- |-------(- ---)[----- 121 ---------- --------au aagcuuguuu ---------- -au-a-cggc gag]------ 181 -----|---A CU|G-CGGA- UGGCU-CAUU AAAU-cagu- uau-aguu-- ----uauuug 241 augg<----- ---------- -----ucuc- --------u- --uuguucuu -cuuuuuacc 301 u>ACUUGG-A UAACCGUGG( -U-AAUU)CU AGAGC-UAA- UACAUG---- ----(----) 361 ---------- -------(-- --)--|---- -- -gauucauuc -aa|auuucu gc|--CCU-A UCA--ACUUU C-GAUGGUA- 1141 GG(-AUAGAG G)CCU-ACCA U-|GGUCG-U AAC|GGGU-A A-CGGA|GAA -U-(UAGG-) 1201 GUU-CGAUU- CCG|GAGAGG G-AGCC(U-G AGAAAU)GGC UACC-ACUUC (UAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GC- AAAUU-ACCC -AAUCCC-G( ---aca--)C 1321 GGGG-A-GGU -|A|GUGACA AUAA-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AA CAAUACAGG- CGCUC(---- --gauaa)GA GU-CU-UGUA A-UUGGAAU- 1501 ------GAGU ----ACAAUU -UAAA--CCC C-----UU-A A-CGA-GUAA C---->AAUU 1561 GGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCCAA 1621 U-AGCGUA|U AUUAA--AGU UGUUG-CAG| UUA--AAAAG CUCGUAGUUG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 gauc------ ---------- ---------- ---------- ---------- ---------- 1801 ---------- --------u- --agggacgc g-cauuuauu uaagcauccg ugucauuggg 1861 ucaa------ ---------- -----acu-g gugac-ugc- gu-ggugu-- --ugc-gggc 1921 u--------c gguccauuag ucaucccaca agg--gug-- -auuagugug uuaaccggcc 1981 cgcccg---- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- --uccccucc 2161 uucuggauu- ---------- ---------- -cccguuccu gcua------ ---------- 2221 ---uugaguu aguggggacg ucacaggg-a gcuguaucau uggccuucac ---------g 2281 ggccaguggu acaguuucug gggcccagau c--------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- -GUUUACCGU 2521 G-AAAA--AA UUAG-A-GUG UUCAA-AG-C AGGCagauu- -------c-- ---------- 2581 --a------- ---auuuucu gccacc-GAA UACAU-UAGC AUGGGA|UA- AUGGAA-UAG 2641 GA---cccug uc-------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- --------cu ccua|-UCUU 2821 -CA-GUUGGU -UA-acuug- --uagAGGA- UCA--GGGUA A--UGAUUAA UA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGA|UAGU ---------- 3001 --UGGGGGCA UU|--AAUAU UUAAUUG-UC -AGAG(GU-G AAA---)UUC U-UGGA-U-U 3061 UAUGA-AAG- A-UUAACU-U CUGC(-GAAA )--GC|A--- UCUGCC-AA| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUG ---UUUUCAU -UAA-U|CA- A-GAACGAAA 3301 GUUAGGGGA- UCGAAGACG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CGUAG|UCU UA--ACC-AU AAACGAUGCC GAC|CA|--- 3421 --gcgau-ua gga-g-a--- ----(----- ---------) -cguugaaua caaaacacca 3481 ccauacau-a auuc------ ---aguacau ggcca(guca aa)ugguugu guauu----- 3541 ---gu-uug- --uguauggc --accgguga augac----- ---------- ---------- 3601 ---------- ---------u c-cc-cua-g -c-agcuu-- ---------- ----guGA(- 3661 GAAA-)UCAU -AAGUC-UUU GGGU|-U|C- CGGGGGGAGU AU--GG-UC( --GCAA-)GG 3721 CUG-AAACUU -AAAG--GAA -UUG|AC-GG -AA-GGGCA- -CCAC-CAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --A-GU|-GG 4021 AGCCUGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--GAA ACUUACCAGG UC[cgg-aca 4081 uagu-aagga uu-----gac aga(uugaua g-c)------ ucuuu----- cuu-gauu-c 4141 uauggg---- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU-G-CAUG |GCC|GN-UC UUA|GUUGG- U|GGA(-GUG 4261 A-)UUUGUC- -UGG(UU-AA UU)CCGUUA- AC-GAACGAG ACCUU-AA|- ---------- 4321 ------(--- --)[CCU-GC UAAAUAugcc g--cgcuaac ucguccauca aaac-ucau- 4381 aug--uga-c uc--ac---- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ----gcgguu cgcugcauau uagugc--ug cca(gcaa)u ggug--gugu uaauaugccg 4621 gcagggcccg gguucaugug agcgguagag uucggcgu-- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ----cuguG- CU-------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------U CUUAGAGG]- --|------- ---------- GACU-Gcu-g cg-c(----- 5041 --gccua-)g ccag-C-GGA AGUU-UGAGG CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UG A|UGCC|CU- 5221 U-AGA-UGUU CUGG-GCCGC A-CGCGCGCU ACACU--G-A UUAAU----- ---------- 5281 ---(------ ----)[ccaa cgagucc--- ---------- --g----cuu caaucga-gg 5341 cguaauaug- --cgugggg( -ucaa)accu augu----au guugcugucc uugau----- 5401 cgcgccu-gg gcc(gaua-) ggucc----g gguaau-cuu ugcaaa]--- ---------- 5461 -------uuu aau-c-g--- uGCU-G-GGG AUAGAUCAU( UGUAAUUA)U UGAUCUUC-A 5521 ACGAGG-AAU U--CCUAGUA AG-CGC-GAG (-UCAUCAG- )CUCGCGU-U -GAUUACG-- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUCC-U-A CC-GAU--UG AA-UGGucc- 5641 ggu-gaaa-- ucc-ucgga- gccg-uggc- cucu-a---c gcaa-ucugg ---------- 5701 -------(gc aa----)ccg gg-uugugag gucaacggug augugcaaac auca-ccu-- 5761 auuugg-cgg -cgaa-|guc -gauugaacc uu-acc-a-u uuag-AGGAA GG-AGAA-G- 5821 UCGUAACAAG GU-------- -----C-U-C CGUAGG(UGA A)CCUGCGGA AGGAUCA--- 5881 --gga----- -------~|| ||| // LOCUS A.polyph.1 5903 bp RNA RNA 11-JAN-191 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: U07407 LOCUS APU07407 2287 bp DNA INV 02-JUL-1994 DEFINITION Acanthamoeba polyphaga BCM:0173:16 ATCC 50371 18S rRNA gene. ACCESSION U07407 KEYWORDS . SOURCE Acanthamoeba polyphaga ORGANISM Acanthamoeba polyphaga Eucaryotae; Protozoa; Sarcomastigophora; Sarcodina; Rhizopoda; Lobosa; Amoebida; Acanthamoeba. REFERENCE 1 (bases 1 to 2287) AUTHORS Gast,R.J., Ledee,D.R., Fuerst,P.A. and Byers,T.J. TITLE Population Structure of Acanthamoeba: Nuclear srRNA Gene Phylogenetic Analysis of 18 Group II and III Isolates JOURNAL Unpublished STANDARD full automatic REFERENCE 2 (bases 1 to 2287) AUTHORS Gast,R.J. TITLE Direct Submission JOURNAL Submitted (05-MAR-1994) Rebecca J. Gast, The Ohio State University, Molecular Genetics, 484 West 12th Avenue, Columbus, OH 43210, USA STANDARD full automatic COMMENT NCBI gi: 507403 FEATURES Location/Qualifiers primer_bind 1..23 /citation=[1] /note="PCR amplification primer" rRNA 24..2267 /product="18S ribosomal RNA" /citation=[1] primer_bind 2268..>2287 /citation=[1] /note="PCR amplification primer" source 1..2287 /strain="BCM:0173:16 ATCC 50371" /organism="Acanthamoeba polyphaga" BASE COUNT 525 a 540 c 648 g 573 t 1 others ORIGIN BASE COUNT 525 a 540 c 648 g 573 t 3617 others ORIGIN 1 |--------- -----CGACU GGU(UGA)UC CU|GCCAGU- A-GUCA-UAU --GCUUGUCU 61 CAAA|-GAUU AA-GCCAUGC A-UGUCU-AA GU|------- |-------(- ---)[----- 121 ---------- --------au aagcuuguuu ---------- -au-a-cggc gag]------ 181 -----|---A CU|G-CGGA- UGGCU-CAUU AAAU-cagu- uau-aguu-- ----uauuug 241 augg<----- ---------- -----ucuc- --------u- --uuugucuu uuuuuuuacc 301 u>ACUUGG-A UAACCGUGG( -U-AAUU)CU AGAGC-UAA- UACAUG---- ----(----) 361 ---------- -------(-- --)--|---- -- -gauucauuc -aa|auuucu gc|--CCU-A UCA--ACUUU C-GAUGGUA- 1141 GG(-AUAGAG G)CCU-ACCA U-|GGUCG-U AAC|GGGU-A A-CGGA|GAA -U-(UAGG-) 1201 GUU-CGAUU- CCG|GAGAGG G-AGCC(U-G AGAAAU)GGC UACC-ACUUC (UAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GC- AAAUU-ACCC -AAUCCC-G( ---aca--)C 1321 GGGG-A-GGU -|A|GUGACA AUAA-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AA CAAUACAGG- CGCUC(---- --gauaa)GA GU-CU-UGUA A-UUGGAAU- 1501 ------GAGU ----ACAAUU -UAAA--CCC C-----UU-A A-CGA-GUAA C---->AAUU 1561 GGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCCAA 1621 U-AGCGUA|U AUUAA--AGU UGUUG-CAG| UUA--AAAAG CUCGUAGUUG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 gauc------ ---------- ---------- ---------- ---------- ---------- 1801 ---------- --------u- --agggacgc g-cauuucaa g---cgcccg ugccaucggg 1861 ucaa------ ---------- -----acc-g guggc-ugc- guuggcgu-- --ugc-gggc 1921 u--------c gguccgucgg uggccccauc aaacggguuu uaucggcgug ucaaccggcc 1981 cgcccg---- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- --uccccucc 2161 uucuggauu- ---------- ---------- -cccguuccu gcua------ ---------- 2221 ---uugaguu aguggggacg ucacaggg-g gucc-aucgu cgucgug-ca aac------- 2281 -ggcggcggu g-ggucccug gggcccagau c--------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- -GUUUACCGU 2521 G-AAAA--AA UUAG-A-GUG UUCAA-AG-C AGGCagauc- -------c-- ---------- 2581 --a------- ---auuuucu gccacc-GAA UACAU-UAGC AUGGGA|UA- AUGGAA-UAG 2641 GA---cccug uc-------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- --------cu ccua|-UUUU 2821 -CA-GUUGGU -UU-uggcag c-gcgAGGA- CUA--GGGUA A--UGAUUAA UA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGA|UAGU ---------- 3001 --UNGGGGCA UU|--AAUAU UUAAUUG-UC -AGAG(GU-G AAA---)UUC U-UGGA-U-U 3061 UAUGA-AAG- A-UUAACU-U CUGC(-GAAA )--GC|A--- UCUGCC-AA| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUG ---UUUUCAU -UAA-U|CA- A-GAACGAAA 3301 GUUAGGGGA- UCGAAGACG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CGUAG|UCU UA--ACC-AU AAACGAUGCC GAC|CA|--- 3421 --gcgau-ua gga-g-a--- ----(----- ---------) -cguugaaua caaaacacca 3481 ccaucggu-g cggucguccu ug-----gcg ucggu(-uuc g-)gccggcg c-----gggg 3541 gcggcuuag- -cccgguggc --accgguga augac----- ---------- ---------- 3601 ---------- ---------u c-cc-cua-g -c-agcuu-- ---------- ----guGA(- 3661 GAAA-)UCAU -AAGUC-UUU GGGU|-U|C- CGGGGGGAGU AU--GG-UC( --GCAA-)GG 3721 CUG-AAACUU -AAAG--GAA -UUG|AC-GG -AA-GGGCA- -CCAC-CAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --A-GU|-GG 4021 AGCCUGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--GAA ACUUACCAGG UC[cgg-aca 4081 uagu-aagga uu-----gac aga(uugaua g-c)------ ucuuu----- cuu-gauu-c 4141 uauggg---- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU-G-CAUG |GCC|GU-UC UUA|GUUGG- U|GGA(-GUG 4261 A-)UUUGUC- -UGG(UU-AA UU)CCGUUA- AC-GAACGAG ACCUU-AA|- ---------- 4321 ------(--- --)[CCU-GC UAAAUAugcc g--cgcuaac ccguccauca aaac-ccau- 4381 gcg--cgg-c uc--ac---- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ----gcgguc cgcugcgggg uggugu---c gcu(ucgc)g gcg---acgu caucccgccg 4621 gcagggcccg gguccgugug ggcgguaggg uucggcgu-- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ----ccguG- CU-------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------U CUUAGAGG]- --|------- ---------- GACU-Gcu-g cg-c(----- 5041 --gccua-)g ccag-C-GGA AGUU-UGAGG CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UG A|UGCC|CU- 5221 U-AGA-UGUU CUGG-GCCGC A-CGCGCGCU ACACU--G-A UUAAU----- ---------- 5281 ---(------ ----)[ccaa cgagucc--- ---------- --g----cuu caaucga-gg 5341 cgcgaugc-- cgugcgggg( -ucaa)accc gcacu---gc gucgcugucc ucgau----- 5401 cgcgccu-gg gcc(gaua-) ggucc----g gguaau-cuu ugcaaa]--- ---------- 5461 -------uuu aau-c-g--- uGCU-G-GGG AUAGAUCAU( UGUAAUUA)U UGAUCUUC-A 5521 ACGAGG-AAU U--CCUAGUA AG-CGC-GAG (-UCAUCAG- )CUCGCGU-U -GAUUACG-- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUCC-U-A CC-GAU--UG AA-UGGucc- 5641 ggu-gaaa-- ucc-ucgga- gccg-uggc- cucu-a---c gcaa-uccgg ---------- 5701 -------(gc aa----)ccg gg-uugugag guc------- ---------- --uc-ccc-- 5761 uuuugg-cgg -cgaa-|guc -gauugaacc uu-acc-a-u uuag-AGGAA GG-AGAA-G- 5821 UCGUAACAAG GU-------- -----C-U-C CGUAGG(UGA A)CCUGCAGA AGGAUCA--- 5881 ---------- -------~|| ||| // LOCUS A.polyph.2 5903 bp RNA RNA 11-JAN-191 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: U07415 LOCUS APU07415 2276 bp DNA INV 02-JUL-1994 DEFINITION Acanthamoeba polyphaga JAC/S2 ATCC 50372 18S rRNA gene. ACCESSION U07415 KEYWORDS . SOURCE Acanthamoeba polyphaga ORGANISM Acanthamoeba polyphaga Eucaryotae; Protozoa; Sarcomastigophora; Sarcodina; Rhizopoda; Lobosa; Amoebida; Acanthamoeba. REFERENCE 1 (bases 1 to 2276) AUTHORS Gast,R.J., Ledee,D.R., Fuerst,P.A. and Byers,T.J. TITLE Population Structure of Acanthamoeba: Nuclear srRNA Gene Phylogenetic Analysis of 18 Group II and III Isolates JOURNAL Unpublished STANDARD full automatic REFERENCE 2 (bases 1 to 2276) AUTHORS Gast,R.J. TITLE Direct Submission JOURNAL Submitted (05-MAR-1994) Rebecca J. Gast, The Ohio State University, Molecular Genetics, 484 West 12th Avenue, Columbus, OH 43210, USA STANDARD full automatic COMMENT NCBI gi: 507411 FEATURES Location/Qualifiers primer_bind 1..23 /citation=[1] /note="PCR amplification primer" rRNA 24..2253 /product="18S ribosomal RNA" /citation=[1] primer_bind 2254..2276 /citation=[1] /note="PCR amplification primer" source 1..2276 /strain="JAC/S2 ATCC 50372" /organism="Acanthamoeba polyphaga" BASE COUNT 529 a 532 c 643 g 572 t ORIGIN BASE COUNT 529 a 532 c 643 g 572 t 3627 others ORIGIN 1 |--------- -----CGACU GGU(UGA)UC CU|GCCAGU- A-GUCA-UAU --GCUUGUCU 61 CAAA|-GAUU AA-GCCAUGC A-UGUCU-AA GU|------- |-------(- ---)[----- 121 ---------- --------au aagcuuguuu ---------- -au-a-cggc gag]------ 181 -----|---A CU|G-CGGA- UGGCU-CAUU AAAU-cagu- uau-aguu-- ----uauuug 241 augg<----- ---------- -----ucuc- --------u- --uuugucuu --uuuuuacc 301 u>ACUUGG-A UAACCGUGG( -U-AAUU)CU AGAGC-UAA- UACAUG---- ----(----) 361 ---------- -------(-- --)--|---- -- -gauucauuc -aa|auuucu gc|--CCU-A UCA--ACUUU C-GAUGGUA- 1141 GG(-AUAGAG G)CCU-ACCA U-|GGUCG-U AAC|GGGU-A A-CGGA|GAA -U-(UAGG-) 1201 GUU-CGAUU- CCG|GAGAGG G-AGCC(U-G AGAAAU)GGC UACC-ACUUC (UAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GC- AAAUU-ACCC -AAUCCC-G( ---aca--)C 1321 GGGG-A-GGU -|A|GUGACA AUAA-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AA CAAUACAGG- CGCUC(---- --gauaa)GA GU-CU-UGUA A-UUGGAAU- 1501 ------GAGU ----ACAAUU -UAAA--CCC C-----UU-A A-CGA-GUAA C---->AAUU 1561 GGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCCAA 1621 U-AGCGUA|U AUUAA--AGU UGUUG-CAG| UUA--AAAAG CUCGUAGUUG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 gauc------ ---------- ---------- ---------- ---------- ---------- 1801 ---------- --------u- --agggacgc g-cauuucaa g---cgcccg ugucguuggg 1861 ucaa------ ---------- -----acc-a gcgac-ugc- guuggcgu-- --ugc-gggc 1921 u--------c gguccgucgg ug--cccaca aag----c-- -acuggcgug ucaaccggcc 1981 cgcccg---- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- --uccccucc 2161 uucuggauu- ---------- ---------- -cccguuccu gcua------ ---------- 2221 ---uugaguu aguggggacg ucacaggg-a gcuc-aucgu cgucagcaau ---------- 2281 -gccggcggu g-gguuccug gggcccagau c--------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- -GUUUACCGU 2521 G-AAAA--AA UUAG-A-GUG UUCAA-AG-C AGGCagauc- -------c-- ---------- 2581 --a------- ---auuuucu gccacc-GAA UACAU-UAGC AUGGGA|UA- AUGGAA-UAG 2641 GA---cccug uc-------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- --------cu ccua|-UUUU 2821 -CA-GUUGGU -UU-uggcag c-gcgAGGA- CUA--GGGUA A--UGAUUAA UA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGA|UAGU ---------- 3001 --UGGGGGCA UU|--AAUAU UUAAUUG-UC -AGAG(GU-G AAA---)UUC U-UGGA-U-U 3061 UAUGA-AAG- A-UUAACU-U CUGC(-GAAA )--GC|A--- UCUGCC-AA| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUG ---UUUUCAU -UAA-U|CA- A-GAACGAAA 3301 GUUAGGGGA- UCGAAGACG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CGUAG|UCU UA--ACC-AU AAACGAUGCC GAC|CA|--- 3421 --gcgau-ua gga-g-a--- ----(----- ---------) -cguugaaua caaaacacca 3481 ccaucggu-g cggucguccu ug---gcguc ucggu(-uuc g-)gccgggg ugc---gggg 3541 acggcuuag- -cccgguggc --accgguga augac----- ---------- ---------- 3601 ---------- ---------u c-cc-cua-g -c-agcuu-- ---------- ----guGA(- 3661 GAAA-)UCAU -AAGUC-UUU GGGU|-U|C- CGGGGGGAGU AU--GG-UC( --GCAA-)GG 3721 CUG-AAACUU -AAAG--GAA -UUG|AC-GG -AA-GGGCA- -CCAC-CAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --A-GU|-GG 4021 AGCCUGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--GAA ACUUACCAGG UC[cgg-aca 4081 uagu-aagga uu-----gac aga(uugaua g-c)------ ucuuu----- cuu-gauu-c 4141 uauggg---- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU-G-CAUG |GCC|GU-UC UUA|GUUGG- U|GGA(-GUG 4261 A-)UUUGUC- -UGG(UU-AA UU)CCGUUA- AC-GAACGAG ACCUU-AA|- ---------- 4321 ------(--- --)[CCU-GC UAAAUAugcc g--cgcuaac ccguccauca aaac-ccau- 4381 gcg--ugg-c uc--ac---- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ----gcgguc cgcugcgggg uggugu---c gcu(ucgc)g gcg---augu caucccgccg 4621 gcagggcccg gguccgugug ggcgguaggg uucggcgu-- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ----ccguG- CU-------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------U CUUAGAGG]- --|------- ---------- GACU-Gcu-g cg-c(----- 5041 --gccua-)g ccag-C-GGA AGUU-UGAGG CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UG A|UGCC|CU- 5221 U-AGA-UGUU CUGG-GCCGC A-CGCGCGCU ACACU--G-A UUAAU----- ---------- 5281 ---(------ ----)[ccaa cgagucc--- ---------- --g----cuu caaucga-gg 5341 cgcgaugc-- -cgucgggg( -ucaa)accc aacug---gc gucgcugucc ucgau----- 5401 cgcgccu-gg gcc(gaua-) ggucc----g gguaau-cuu ugcaaa]--- ---------- 5461 -------uuu aau-c-g--- uGCU-G-GGG AUAGAUCAU( UGUAAUUA)U UGAUCUUC-A 5521 ACGAGG-AAU U--CCUAGUA AG-CGC-GAG (-UCAUCAG- )CUCGCGU-U -GAUUACG-- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUCC-U-A CC-GAU--UG AA-UGGucc- 5641 ggu-gaaa-- ucc-ucgga- gccg-uggc- cucu-a---c gcaa-uccgg ---------- 5701 -------(gc aa----)ccg gg-uugugag guc------- ---------- --uc-ccc-- 5761 uuuugg-cgg -cgaa-|guc -gauugaacc uu-acc-a-u uuag-AGGAA GG-AGAA-G- 5821 UCGUAACAAG GU-------- -----C-U-C CGUAGG(UGA A)CCUGCAGA AGGAUCA--- 5881 --gga----- -------~|| ||| // LOCUS A.polyph.3 5903 bp RNA RNA 11-JAN-191 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: U07402 LOCUS APU07402 2273 bp DNA INV 02-JUL-1994 DEFINITION Acanthamoeba polyphaga CDC:0884:V029 18S rRNA gene. ACCESSION U07402 KEYWORDS . SOURCE Acanthamoeba polyphaga ORGANISM Acanthamoeba polyphaga Eucaryotae; Protozoa; Sarcomastigophora; Sarcodina; Rhizopoda; Lobosa; Amoebida; Acanthamoeba. REFERENCE 1 (bases 1 to 2273) AUTHORS Gast,R.J., Ledee,D.R., Fuerst,P.A. and Byers,T.J. TITLE Population Structure of Acanthamoeba: Nuclear srRNA Gene Phylogenetic Analysis of 18 Group II and III Isolates JOURNAL Unpublished STANDARD full automatic REFERENCE 2 (bases 1 to 2273) AUTHORS Gast,R.J. TITLE Direct Submission JOURNAL Submitted (05-MAR-1994) Rebecca J. Gast, The Ohio State University, Molecular Genetics, 484 West 12th Avenue, Columbus, OH 43210, USA STANDARD full automatic COMMENT NCBI gi: 507398 FEATURES Location/Qualifiers primer_bind 1..23 /citation=[1] /note="PCR amplification primer" rRNA 24..2250 /product="18S ribosomal RNA" /citation=[1] primer_bind 2251..2273 /citation=[1] /note="PCR amplification primer" source 1..2273 /strain="CDC:0884:V029" /organism="Acanthamoeba polyphaga" BASE COUNT 527 a 529 c 644 g 573 t ORIGIN BASE COUNT 527 a 529 c 644 g 573 t 3630 others ORIGIN 1 |--------- -----CGACU GGU(UGA)UC CU|GCCAGU- A-GUCA-UAU --GCUUGUCU 61 CAAA|-GAUU AA-GCCGUGC A-UGUCU-AA GU|------- |-------(- ---)[----- 121 ---------- --------au aagcuuguuu ---------- -au-a-cggc gag]------ 181 -----|---A CU|G-CGGA- UGGCU-CAUU AAAU-cagu- uau-aguu-- ----uauuug 241 augg<----- ---------- -----ucuc- --------u- --uuugucuu --uuuuuacc 301 u>ACUUGG-A UAACCGUGG( -U-AAUU)CU AGAGC-UAA- UACAUG---- ----(----) 361 ---------- -------(-- --)--|---- -- -gauucauuc -aa|auuucu gc|--CCU-A UCA--ACUUU C-GAUGGUA- 1141 GG(-AUAGAG G)CCU-ACCA U-|GGUCG-U AAC|GGGU-A A-CGGA|GAA -U-(UAGG-) 1201 GUU-CGAUU- CCG|GAGAGG G-AGCC(U-G AGAAAU)GGC UACC-ACUUC (UAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GC- AAAUU-ACCC -AAUCCC-G( ---aca--)C 1321 GGGG-A-GGU -|A|GUGACA AUAA-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AA CAAUACAGG- CGCUC(---- --gauaa)GA GU-CU-UGUA A-UUGGAAU- 1501 ------GAGU ----ACAAUU -UAAA--CCC C-----UU-A A-CGA-GUAA C---->AAUU 1561 GGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCCAA 1621 U-AGCGUA|U AUUAA--AGU UGUUG-CAG| UUA--AAAAG CUCGUAGUUG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 gauc------ ---------- ---------- ---------- ---------- ---------- 1801 ---------- --------u- --agggacgc g-cauuucaa g---cgcccg ugucguuggg 1861 ucaa------ ---------- -----acc-a gcgac-ugc- guuggcgu-- --ugc-gggc 1921 u--------c gguccgucgg ug--ccacaa agc------- -accggcgug ucaaccggcc 1981 cgcccg---- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- --uccccucc 2161 uucuggauu- ---------- ---------- -cccguuccu gcua------ ---------- 2221 ---uugaguu aguggggacg ucacaggg-a gcuc-aucgu cgucag--ca au-------- 2281 -gccggcggu g-gguuccug gggcccagau c--------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- -GUUUACCGU 2521 G-AAAA--AA UUAG-A-GUG UUCAA-AG-C AGGCagauc- -------c-- ---------- 2581 --a------- ---auuuucu gccacc-GAA UACAU-UAGC AUGGGA|UA- AUGGAA-UAG 2641 GA---cccug uc-------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- --------cu ccua|-UUUU 2821 -CA-GUUGGU -UU-uggcag c-gcgAGGA- CUA--GGGUA A--UGAUUAA UA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGA|UAGU ---------- 3001 --UGGGGGCA UU|--AAUAU UUAAUUG-UC -AGAG(GU-G AAA---)UUC U-UGGA-U-U 3061 UAUGA-AAG- A-UUAACU-U CUGC(-GAAA )--GC|A--- UCUGCC-AA| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUG ---UUUUCAU -UAA-U|CA- A-GAACGAAA 3301 GUUAGGGGA- UCGAAGACG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CGUAG|UCU UA--ACC-AU AAACGAUGCC GAC|CA|--- 3421 --gcgau-ua gga-g-a--- ----(----- ---------) -cguugaaua caaaacacca 3481 ccaucggu-g cggucguccu ug---gcguc ucggu(-uuc g-)gccgggg ugc---gggg 3541 acggcuuag- -cccgguggc --accgguga augac----- ---------- ---------- 3601 ---------- ---------u c-cc-cua-g -c-agcuu-- ---------- ----guGA(- 3661 GAAA-)UCAU -AAGUC-UUU GGGU|-U|C- CGGGGGGAGU AU--GG-UC( --GCAA-)GG 3721 CUG-AAACUU -AAAG--GAA -UUG|AC-GG -AA-GGGCA- -CCAC-CAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --A-GU|-GG 4021 AGCCUGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--GAA ACUUACCAGG UC[cgg-aca 4081 uagu-aagga uu-----gac aga(uugaua g-c)------ ucuuu----- cuu-gauu-c 4141 uauggg---- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU-G-CAUG |GCC|GU-UC UUA|GUUGG- U|GGA(-GUG 4261 A-)UUUGUC- -UGG(UU-AA UU)CCGUUA- AC-GAACGAG ACCUU-AA|- ---------- 4321 ------(--- --)[CCU-GC UAAAUAugcc g--cgcuaac ccguccauca aaac-ccau- 4381 gcg--ugg-c uc--ac---- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ----gcgguc cgcugcgggg uggugu---c gcu(ucgc)g gcg---augu caucccgccg 4621 gcagggcccg gguccgugug ggcgguaggg uucggcgu-- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ----ccguG- CU-------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------U CUUAGAGG]- --|------- ---------- GACU-Gcu-g cg-c(----- 5041 --gccua-)g ccag-C-GGA AGUU-UGAGG CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UG A|UGCC|CU- 5221 U-AGA-UGUU CUGG-GCCGC A-CGCGCGCU ACACU--G-A UUAAU----- ---------- 5281 ---(------ ----)[ccaa cgagucc--- ---------- --g----cuu caaucga-gg 5341 cgcgaugc-- -cguugggg( -ucaa)accc aacu----gc gucgcugucc ucgau----- 5401 cgcgccu-gg gcc(gaua-) ggucc----g gguaau-cuu ugcaaa]--- ---------- 5461 -------uuu aau-c-g--- uGCU-G-GGG AUAGAUCAU( UGUAAUUA)U UGAUCUUC-A 5521 ACGAGG-AAU U--CCUAGUA AG-CGC-GAG (-UCAUCAG- )CUCGCGU-U -GAUUACG-- 5581 U-CCCUGCCC UU|UGUA-CA CACUGCcCGU CGCUCC-U-A CC-GAU--UG AA-UGGucc- 5641 ggu-gaaa-- ucc-ucgga- gccg-uggc- cucu-a---c gcaa-uccgg ---------- 5701 -------(gc aa----)ccg gg-uugugag guc------- ---------- --uc-ccc-- 5761 uuuugg-cgg -cgaa-|guc -gauugaacc uu-acc-a-u uuag-AGGAA GG-AGAA-G- 5821 UCGUAACAAG GU-------- -----C-U-C CGUAGG(UGA A)-CUGCGGA AGGAUCA--- 5881 --gga----- -------~|| ||| // LOCUS A.rhysodes 5903 bp RNA RNA 11-JAN-191 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: U07406 LOCUS ARU07406 2280 bp DNA INV 02-JUL-1994 DEFINITION Acanthamoeba rhysodes BCM:0685:116 ATCC 50368 18S rRNA gene. ACCESSION U07406 KEYWORDS . SOURCE Acanthamoeba rhysodes ORGANISM Acanthamoeba rhysodes Eucaryotae; Protozoa; Sarcomastigophora; Sarcodina; Rhizopoda; Lobosa; Amoebida; Acanthamoeba. REFERENCE 1 (bases 1 to 2280) AUTHORS Gast,R.J., Ledee,D.R., Fuerst,P.A. and Byers,T.J. TITLE Population Structure of Acanthamoeba: Nuclear srRNA Gene Phylogenetic Analysis of 18 Group II and III Isolates JOURNAL Unpublished STANDARD full automatic REFERENCE 2 (bases 1 to 2280) AUTHORS Gast,R.J. TITLE Direct Submission JOURNAL Submitted (05-MAR-1994) Rebecca J. Gast, The Ohio State University, Molecular Genetics, 484 West 12th Avenue, Columbus, OH 43210, USA STANDARD full automatic COMMENT NCBI gi: 507402 FEATURES Location/Qualifiers primer_bind 1..23 /citation=[1] /note="PCR amplification primer" rRNA 24..2261 /product="18S ribosomal RNA" /citation=[1] primer_bind 2262..>2280 /citation=[1] /note="PCR amplification primer" source 1..2280 /strain="BCM:0685:116 ATCC 50368" /organism="Acanthamoeba rhysodes" BASE COUNT 523 a 539 c 650 g 568 t ORIGIN BASE COUNT 523 a 539 c 650 g 568 t 3623 others ORIGIN 1 |--------- -----CGACU GGU(UGA)UC CU|GCCAGU- A-GUCA-UAU --GCUUGUCU 61 CAAA|-GAUU AA-GCCAUGC A-UGUCU-AA GU|------- |-------(- ---)[----- 121 ---------- --------au aagcuuguuu ---------- -au-a-cggc gag]------ 181 -----|---A CU|G-CGGA- UGGCU-CAUU AAAU-cagu- uau-aguu-- ----uauuug 241 augg<----- ---------- -----ucuc- --------u- --uuugucuu --uuuuuacc 301 u>ACUUGG-A UAACCGUGG( -U-AAUU)CU AGAGC-UAA- UACAUG---- ----(----) 361 ---------- -------(-- --)--|---- -- -gauucauuc -aa|auuucu gc|--CCU-A UCA--ACUUU C-GAUGGUA- 1141 GG(-AUAGAG G)CCU-ACCA U-|GGUCG-U AAC|GGGU-A A-CGGA|GAA -U-(UAGG-) 1201 GUU-CGAUU- CCG|GAGAGG G-AGCC(U-G AGAAAU)GGC UACC-ACUUC (UAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GC- AAAUU-ACCC -AAUCCC-G( ---aca--)C 1321 GGGG-A-GGU -|A|GUGACA AUAA-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AA CAAUACAGG- CGCUC(---- --gauaa)GA GU-CU-UGUA A-UUGGAAU- 1501 ------GAGU ----ACAAUU -UAAA--CCC C-----UU-A A-CGA-GUAA C---->AAUU 1561 GGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCCAA 1621 U-AGCGUA|U AUUAA--AGU UGUUG-CAG| UUA--AAAAG CUCGUAGUUG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 gauc------ ---------- ---------- ---------- ---------- ---------- 1801 ---------- --------u- --agggacgc g-cauuucaa g---cgcccg ugccaucggg 1861 ucaa------ ---------- -----acc-g guggc-ugc- guuggcgu-- --ugc-gggc 1921 u--------c gguccgucgg ugccccacaa agg--gcu-- -aucggcgug ucaaccggcc 1981 cgcccg---- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- --uccccucc 2161 uucuggauu- ---------- ---------- -cccguuccu gcua------ ---------- 2221 ---uugaguu aguggggacg ucacaggg-g gucc-aucgu cgucggguca aac------- 2281 gcgcggcggu g-ggucccug gggcccagau c--------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- -GUUUACCGU 2521 G-AAAA--AA UUAG-A-GUG UUCAA-AG-C AGGCagauc- -------c-- ---------- 2581 --a------- ---auuuucu gccacc-GAA UACAU-UAGC AUGGGA|UA- AUGGAA-UAG 2641 GA---cccug uc-------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- --------cu ccua|-UUUU 2821 -CA-GUUGGU -UU-uggcag c-gcgAGGA- CUA--GGGUA A--UGAUUAA UA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGA|UAGU ---------- 3001 --UGGGGGCA UU|--AAUAU UUAAUUG-UC -AGAG(GU-G AAA---)UUC U-UGGA-U-U 3061 UAUGA-AAG- A-UUAACU-U CUGC(-GAAA )--GC|A--- UCUGCC-AA| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUG ---UUUUCAU -UAA-U|CA- A-GAACGAAA 3301 GUUAGGGGA- UCGAAGACG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CGUAG|UCU UA--ACC-AU AAACGAUGCC GAC|CA|--- 3421 --gcgau-ua gga-g-a--- ----(----- ---------) -cguugaaua caaaacacca 3481 ccaucggc-g cggucguccu ug---gcguc ggucu(-uuc g-)gggccgg cgc---gggg 3541 gcgguuuag- -cccgguggc --accgguga augac----- ---------- ---------- 3601 ---------- ---------u c-cc-cua-g -c-agcuu-- ---------- ----guGA(- 3661 GAAA-)UCAU -AAGUC-UUU GGGU|-U|C- CGGGGGGAGU AU--GG-UC( --GCAA-)GG 3721 CUG-AAACUU -AAAG--GAA -UUG|AC-GG -AA-GGGCA- -CCAC-CAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --A-GU|-GG 4021 AGCCUGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--GAA ACUUACCAGG UC[cgg-aca 4081 uagu-aagga uu-----gac aga(uugaua g-c)------ ucuuu----- cuu-gauu-c 4141 uauggg---- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU-G-CAUG |GCC|GU-UC UUA|GUUGG- U|GGA(-GUG 4261 A-)UUUGUC- -UGG(UU-AA UU)CCGUUA- AC-GAACGAG ACCUU-AA|- ---------- 4321 ------(--- --)[CCU-GC UAAAUAugcc g--cgcuaac ccguccauca aaac-ccau- 4381 gcg--cgg-c uc--ac---- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ----gcgguc cgcugcgggg uggugu---c gcu(ucgc)g gcg---acgu caucccgccg 4621 gcagggcccg gguccgugug ggcgguaggg uucggcgu-- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ----ccguG- CU-------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------U CUUAGAGG]- --|------- ---------- GACU-Gcu-g cg-c(----- 5041 --gccua-)g ccag-C-GGA AGUU-UGAGG CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UG A|UGCC|CU- 5221 U-AGA-UGUU CUGG-GCCGC A-CGCGCGCU ACACU--G-A UUAAU----- ---------- 5281 ---(------ ----)[ccaa cgagucc--- ---------- --g----cuu caaucga-gg 5341 cguggcgc-- -ugucgggg( -ucaa)accc gacc----gc gucgcugucc ucgau----- 5401 cgcgccu-gg gcc(gaua-) ggucc----g gguaau-cuu ugcaaa]--- ---------- 5461 -------uuu aau-c-g--- uGCU-G-GGG AUAGAUCAU( UGUAAUUA)U UGAUCUUC-A 5521 ACGAGG-AAU U--CCUAGUA AG-CGC-GAG (-UCAUCAG- )CUCGCGU-U -GAUUACG-- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUCC-U-A CC-GAU--UG AA-UGGucc- 5641 ggu-gaaa-- ucc-ucgga- gccg-uggc- cucu-a---c gcaa-uccgg ---------- 5701 -------(gc aa----)ccg gg-uugugag guc------- ---------- --uc-ccc-- 5761 uuuugg-cgg -cgaa-|guc -gauugaacc uu-acc-a-u uuag-AGGAA GG-AGAA-G- 5821 UCGUAACAAG GU-------- -----C-U-C CGUAGG(UGA A)CCUGCAGA AGGAUC---- 5881 ---------- -------~|| ||| // LOCUS A.royreba 5903 bp RNA RNA 11-JAN-191 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: U07417 LOCUS ARU07417 2278 bp DNA INV 02-JUL-1994 DEFINITION Acanthamoeba royreba Oak Ridge ATCC 30884 18S rRNA gene. ACCESSION U07417 KEYWORDS . SOURCE Acanthamoeba royreba ORGANISM Acanthamoeba royreba Eucaryotae; Protozoa; Sarcomastigophora; Sarcodina; Rhizopoda; Lobosa; Amoebida; Acanthamoeba. REFERENCE 1 (bases 1 to 2278) AUTHORS Gast,R.J., Ledee,D.R., Fuerst,P.A. and Byers,T.J. TITLE Population Structure of Acanthamoeba: Nuclear srRNA Gene Phylogenetic Analysis of 18 Group II and III Isolates JOURNAL Unpublished STANDARD full automatic REFERENCE 2 (bases 1 to 2278) AUTHORS Gast,R.J. TITLE Direct Submission JOURNAL Submitted (05-MAR-1994) Rebecca J. Gast, The Ohio State University, Molecular Genetics, 484 West 12th Avenue, Columbus, OH 43210, USA STANDARD full automatic COMMENT NCBI gi: 507413 FEATURES Location/Qualifiers primer_bind <1..12 /citation=[1] /note="PCR amplification primer; the first 11 predicted bases were not sequenced" rRNA 13..2255 /product="18S ribosomal RNA" /citation=[1] primer_bind 2256..2278 /citation=[1] /note="PCR amplification primer" source 1..2278 /strain="Oak Ridge ATCC 30884" /organism="Acanthamoeba royreba" BASE COUNT 530 a 531 c 640 g 576 t 1 others ORIGIN BASE COUNT 530 a 531 c 640 g 576 t 3626 others ORIGIN 1 |--------- ---------- ---(---)-C CU|GCCAGU- A-GUCA-UAU --GCUUGUCU 61 CAAA|-GAUU AA-GCCAUGC A-UGUCU-AA GU|------- |-------(- ---)[----- 121 ---------- --------au aagcuuguuu ---------- -au-a-cggc gag]------ 181 -----|---A CU|G-CGGA- UGGCU-CAUU AAAU-cagu- uau-aguu-- ----uauuug 241 augg<----- ---------- -----ucuc- --------u- --uuugucuu --uuuuuacc 301 u>ACUUGG-A UAACCGUGG( -U-AAUU)CU AGAGC-UAA- UACAUG---- ----(----) 361 ---------- -------(-- --)--|---- -- -gauucauuc -aa|auuucu gc|--CCU-A UCA--ACUUU C-GAUGGUA- 1141 GG(-AUAGAG G)CCU-ACCA U-|GGUCG-U AAC|GGGU-A A-CGGA|GAA -U-(UAGG-) 1201 GUU-CGAUU- CCG|GAGAGG G-AGCC(U-G AGAAAU)GGC UACC-ACUUC (UAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GC- AAAUU-ACCC -AAUCCC-G( ---aca--)C 1321 GGGG-A-GGU -|A|GUGACA AUAA-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AA CAAUACAGG- CGCUC(---- --gauaa)GA GU-CU-UGUA A-UUGGAAU- 1501 ------GAGU ----ACAAUU -UAAA--CCC C-----UU-A A-CGA-GUAA C---->AAUU 1561 GGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCCAA 1621 U-AGCGUA|U AUUAA--AGU UGUUG-CAG| UUA--AAAAG CUCGUAGUUG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 gauc------ ---------- ---------- ---------- ---------- ---------- 1801 ---------- --------u- --agggacgc g-cauuucaa g---cgcccg ugucgucggg 1861 ucaa------ ---------- -----acc-g gcgac-ugc- guuggcgu-- --ugc-gggc 1921 u--------c gguccgucgg ugc-cccaca aag--guu-- -aucggcgug ucaaccggcc 1981 cgcccg---- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- --uccccucc 2161 uucuggauu- ---------- ---------- -cccguuccu gcua------ ---------- 2221 ---uugaguu aguggggacg ucacaggg-g gucc-aucgu cgacguuuca a-------cg 2281 cgucggcggu g-gaucucug gggcccagau c--------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- -GUUUACCGU 2521 G-AAAA--AA UUAG-A-GUG UUCAA-AG-C AGGCagauu- -------c-- ---------- 2581 --a------- ---auuuucu gccacc-GAA UACAU-UAGC AUGGGA|UA- AUGGAA-UAG 2641 GA---cccug uc-------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- --------cu ccua|-UUUU 2821 -CA-GUUGGU -UU-uggcag c-gcgAGGA- CUA--GGGUA A--UGAUUAA UA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGA|UAGU ---------- 3001 --UGGGGGCA UU|--AAUAU UUAAUUG-UC -AGAG(GU-G AAA---)UUC U-UGGA-U-U 3061 UAUGA-AAG- A-UUAACU-U CUGC(-GAAA )--GC|A--- UCUGCC-AA| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUG ---UUUUCAU -UAA-U|CA- A-GAACGAAA 3301 GUUAGGGGA- UCGAAGACG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CGUAG|UCU UA--ACC-AU AAACGAUGCC GAC|CA|--- 3421 --gcgau-ua gga-g-a--- ----(----- ---------) -cguugaaua caaaacacca 3481 ccaucggc-g cggucguccu ug---gcguu cgugu(-uca c-)gcacgag cgc---gagg 3541 gcgguuuag- -cccgauggc --accgguga augac----- ---------- ---------- 3601 ---------- ---------u c-cc-cua-g -c-agcuu-- ---------- ----guGA(- 3661 GAAA-)UCAU -AAGUC-UUU GGGU|-U|C- CGGGGGGAGU AU--GG-UC( --GCAA-)GG 3721 CUG-AAACUU -AAAG--GAA -UUG|AC-GG -AA-GGGCA- -CCAC-CAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --A-GU|-GG 4021 AGCCUGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--GAA ACUUACCAGG UC[cgg-aca 4081 uagu-aagga uu-----gac aga(uugaua g-c)------ ucuuu----- cuu-gauu-c 4141 uauggg---- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU-G-CAUG |GCC|GU-UC UUA|GUUGG- U|GGA(-GUG 4261 A-)UUUGUC- -UGG(UU-AA UU)CCGUUA- AC-GAACGAG ACCUU-AA|- ---------- 4321 ------(--- --)[CCU-GC UAAAUAugcc g--cgcuaac ccguccauca aaac-ccau- 4381 gcg--cgg-c uc--ac---- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ----gcgguc cgcugcgggg uggugu---c gcu(ucgc)g gcg---acgu cauuccgccg 4621 gcagggcccg gguccgugug ggcgguaggg uucggcgu-- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ----ccguG- CU-------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------U CUUAGAGG]- --|------- ---------- GACU-Gcu-g cg-c(----- 5041 --gccua-)g ccag-C-GGA AGUU-UGAGG CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UN A|UGCC|CU- 5221 U-AGA-UGUU CUGG-GCCGC A-CGCGCGCU ACACU--G-A UUAAU----- ---------- 5281 ---(------ ----)[ccaa cgagucc--- ---------- --g----cuu caaucga-gg 5341 cguggcgcc- -cgucgggg( -ucaa)accc gauggu-cgc gucgcugucc ucgau----- 5401 cgcgccu-gg gcc(gaua-) ggucc----g gguaau-cuu ugcaaa]--- ---------- 5461 -------uuu aau-c-g--- uGCU-G-GGG AUAGAUCAU( UGUAAUUA)U UGAUCUUC-A 5521 ACGAGG-AAU U--CCUAGUA AG-CGC-GAG (-UCAUCAG- )CUCGCGU-U -GAUUACG-- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUCC-U-A CC-GAU--UG AA-UGGucc- 5641 ggu-gaaa-- ucc-ucgga- gccg-uggc- cucu-a---c gcaa-uccgg ---------- 5701 -------(gc aa----)ccg gg-uugugag guc------- ---------- --uc-ccc-- 5761 uuuugg-cgg -cgaa-|guc -gauugaacc uu-acc-a-u uuag-AGGAA GG-AGAA-G- 5821 UCGUAACAAG GU-------- -----C-U-C CGUAGG(UGA A)-CUGCGGA AGGAUCA--- 5881 --gga----- -------~|| ||| // LOCUS Aca.sp.688 5903 bp RNA RNA 11-JAN-191 DEFINITION Acanthamoeba sp. CDC:0688:V125. ACCESSION No information KEYWORDS No information. SOURCE Acanthamoeba sp. CDC:0688:V125. ORGANISM Acanthamoeba sp. CDC:0688:V125. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: U07404 LOCUS ASU07404 2290 bp DNA INV 02-JUL-1994 DEFINITION Acanthamoeba sp. CDC:0688:V125 18S rRNA gene. ACCESSION U07404 KEYWORDS . SOURCE Acanthamoeba sp. ORGANISM Acanthamoeba sp. Eucaryotae; Protozoa; Sarcomastigophora; Sarcodina; Rhizopoda; Lobosa; Amoebida; Acanthamoeba. REFERENCE 1 (bases 1 to 2290) AUTHORS Gast,R.J., Ledee,D.R., Fuerst,P.A. and Byers,T.J. TITLE Population Structure of Acanthamoeba: Nuclear srRNA Gene Phylogenetic Analysis of 18 Group II and III Isolates JOURNAL Unpublished STANDARD full automatic REFERENCE 2 (bases 1 to 2290) AUTHORS Gast,R.J. TITLE Direct Submission JOURNAL Submitted (05-MAR-1994) Rebecca J. Gast, The Ohio State University, Molecular Genetics, 484 West 12th Avenue, Columbus, OH 43210, USA STANDARD full automatic COMMENT NCBI gi: 507400 FEATURES Location/Qualifiers primer_bind 1..23 /citation=[1] /note="PCR amplification primer" rRNA 24..2267 /product="18S ribosomal RNA" /citation=[1] primer_bind 2268..2290 /citation=[1] /note="PCR amplification primer" source 1..2290 /strain="CDC:0688:V125" /organism="Acanthamoeba sp." BASE COUNT 527 a 532 c 650 g 578 t 3 others ORIGIN BASE COUNT 527 a 532 c 650 g 578 t 3616 others ORIGIN 1 |--------- -----CGACU GGU(UGA)UC CU|GCCACU- A-GUCA-UAU --GCUUGUCU 61 CAAA|-GAUU AA-NCCAUGC A-UGUCU-AA GU|------- |-------(- ---)[----- 121 ---------- --------au aagcuuguuu ---------- -au-a-cggc gag]------ 181 -----|---A CU|G-CGGA- UGGCU-CAUU AAAU-cagu- uau-aguu-- ----uauuug 241 augg<----- ---------- -----ucuc- --------u- --uuugucuu uuuuuuuacc 301 u>ACUUGG-A UAACCGUGG( -U-AAUU)CU AGAGC-UAA- UACAUG---- ----(----) 361 ---------- -------(-- --)--|---- -- -gauucauuc -aa|auuucu gc|--CCU-A UCA--ACUUU C-GAUGGUA- 1141 GG(-AUAGAG G)CCU-ACCA U-|GGUCG-U AAC|GGGU-A A-CGGA|GAA -U-(UAGG-) 1201 GUU-CGAUU- CCG|GAGAGG G-AGCC(U-G AGAAAU)GGC UACC-ACUUC (UAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GC- AAAUU-ACCC -AAUCCC-G( ---aca--)C 1321 GGGG-A-GGU -|A|GUGACA AUAA-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AA CAAUACAGG- CGCUC(---- --gauaa)GA GU-CU-UGUA A-UUGGAAU- 1501 ------GAGU ----ACAAUU -UAAA--CCC C-----UU-A A-CGA-GUAA C---->AAUU 1561 GGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCCAA 1621 U-AGCGUA|U AUUAA--AGU UGUUG-CAG| UUA--AAAAG CUCGUAGUUG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 gauc------ ---------- ---------- ---------- ---------- ---------- 1801 ---------- --------u- --agggacgc g-cauuucaa g---cgcccg ugucguuggg 1861 ucaa------ ---------- -----acc-a gcgac-ugc- guuggcgu-- --ugc-gggc 1921 u--------c gguccgucgg uggccacaca aaug-gcc-- -acuggcgug ucaaccggcc 1981 cgcccg---- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- --uccccucc 2161 uucuggauu- ---------- ---------- -cccguuccu gcua------ ---------- 2221 ---uugaguu aguggggacg ucacaggg-g gcuc-aucgu cgaucgugca aac------- 2281 gggcggcggu g-ggucccug gggcccagau c--------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- -GUUUACCGU 2521 G-AAAA--AA UUAG-A-GUG UUCAA-AG-C AGGCagauc- -------c-- ---------- 2581 --a------- ---auuuucu gccacc-GAA UACAU-UAGC AUGGGA|UA- AUGGAA-UAG 2641 GA---cccug uc-------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- --------cu ccua|-UUUU 2821 -CA-GUUGGU -UU-uggcag c-gcgAGGA- CUA--GGGUA A--UGAUUAA UA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGA|UAGU ---------- 3001 --UGGGGGCA UU|--AAUAU UUAAUUG-UC -AGAG(GU-G AAA---)UUC U-UGGA-U-U 3061 UAUGA-AAG- A-UUAACU-U CUGC(-GAAA )--GC|A--- UCUGCC-AA| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUG ---UUUUCAU -UAA-U|CA- A-GAACGAAA 3301 GUUAGGGGA- UCGAAGACG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CGUAG|UCU UA--ACC-AU AAACGAUGCC GAC|CA|--- 3421 --gcgau-ua gga-g-a--- ----(----- ---------) -cguugaaua caaaacacca 3481 ccaucgguug cggucguccu ug---gcguc ucggu(-uuc g-)gccgggg cgc---gggg 3541 acgguuuag- -cccgguggc --accgguga augac----- ---------- ---------- 3601 ---------- ---------u c-cc-cua-g -c-agcuu-- ---------- ----guGA(- 3661 GAAA-)UCAU -AAGUC-UUU GGGU|-U|C- CGGGGGGAGU AU--GG-UC( --GCAA-)GG 3721 CUG-AAACUU -AAAG--GAA -UUG|AC-GG -AA-GGGCA- -CCAC-CAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --A-GU|-GG 4021 AGCCUGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--GAA ACUUACCAGG UC[cgg-aca 4081 uagu-aagga uu-----gac aga(uugaua g-c)------ ucuuu----- cuu-gauu-c 4141 uauggg---- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU-G-CAUG |GCC|GU-UC UUA|GUUGG- U|GGA(-GUG 4261 A-)UUUGUC- -UGG(UU-AA UU)CCGUUA- AC-GAACGAG ACCUU-AA|- ---------- 4321 ------(--- --)[CCU-GC UAAAUAugcc g--cgcuaac ccguccauca aaac-ccau- 4381 gcg--ugg-c uc--ac---- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ----gcgguc cgcugngggg uggugu---c gcu(ucgc)g gcg---augu caucccgccg 4621 gcagggcccg gguccgugug ggcgguaggg uucggcgu-- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ----ccguG- CU-------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------U CUUAGAGG]- --|------- ---------- GACU-Gcu-g cg-c(----- 5041 --gccua-)g ccag-C-GGA AGUU-UGAGG CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UG A|UGCC|CU- 5221 U-AGA-UGUU CUGG-GCCGC A-CGCGCGCU ACACU--G-A UUAAU----- ---------- 5281 ---(------ ----)[ccaa cgagucc--- ---------- --g----cuu caaucga-gg 5341 cguggcgc-- uggucgggg( -ucaa)accc gaucc---gc gucgcugucc ucgau----- 5401 cgcgccu-gg gcc(gaua-) ggucc----g gguaau-cuu ugcaaa]--- ---------- 5461 -------uuu aau-c-g--- uGCU-G-GGG AUAGAUCAU( UGUAAUUA)U UGAUCUUC-A 5521 ACGAGG-AAU U--CCUAGUA AG-CGC-GAG (-UCAUCAG- )CUCGCGU-U -GAUUACG-- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUCC-U-A CC-GAU--UG AA-UGGucc- 5641 ggu-gaaa-- ucc-ucgga- gccg-uggc- cucu-a---c gcaa-uccgg ---------- 5701 -------(gc aa----)ccg gg-uugugag guc------- ---------- --uc-ccc-- 5761 uuuugg-cgg -cgaa-|guc -gauugaacc uu-acc-a-u uuag-AGGAA GG-AGAA-G- 5821 UCGUAACAAG GU-------- -----C-U-C CGUAGG(UGA A)-CUGCGGA NGGAUCA--- 5881 --gga----- -------~|| ||| // LOCUS Aca.sp.288 5903 bp RNA RNA 11-JAN-191 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: U07409 LOCUS ASU07409 2298 bp DNA INV 02-JUL-1994 DEFINITION Acanthamoeba sp. BCM:0288:27 ATCC 50369 18S rRNA gene. ACCESSION U07409 KEYWORDS . SOURCE Acanthamoeba sp. ORGANISM Acanthamoeba sp. Eucaryotae; Protozoa; Sarcomastigophora; Sarcodina; Rhizopoda; Lobosa; Amoebida; Acanthamoeba. REFERENCE 1 (bases 1 to 2298) AUTHORS Gast,R.J., Ledee,D.R., Fuerst,P.A. and Byers,T.J. TITLE Population Structure of Acanthamoeba: Nuclear srRNA Gene Phylogenetic Analysis of 18 Group II and III Isolates JOURNAL Unpublished STANDARD full automatic REFERENCE 2 (bases 1 to 2298) AUTHORS Gast,R.J. TITLE Direct Submission JOURNAL Submitted (05-MAR-1994) Rebecca J. Gast, The Ohio State University, Molecular Genetics, 484 West 12th Avenue, Columbus, OH 43210, USA STANDARD full automatic COMMENT NCBI gi: 507405 FEATURES Location/Qualifiers primer_bind 1..23 /citation=[1] /note="PCR amplification primer" rRNA 24..2275 /product="18S ribosomal RNA" /citation=[1] primer_bind 2276..2298 /citation=[1] /note="PCR amplification primer" source 1..2298 /strain="BCM:0288:27 ATCC 50369" /organism="Acanthamoeba sp." BASE COUNT 534 a 537 c 651 g 576 t ORIGIN BASE COUNT 534 a 537 c 651 g 576 t 3605 others ORIGIN 1 |--------- -----CGACU GGU(UGA)UC CU|GCCAGU- A-GUCA-UAU --GCUUGUCU 61 CAAA|-GAUU AA-GCCAUGC A-UGUCU-AA GU|------- |-------(- ---)[----- 121 ---------- --------au aagcuuguuu ---------- -au-a-cggc gag]------ 181 -----|---A CU|G-CGGA- UGGCU-CAUU AAAU-cagu- uau-aguu-- ----uauuug 241 augg<----- ---------- -----ucuc- --------u- --uuugucuu --uuuuuacc 301 u>ACUUGG-A UAACCGUGG( -U-AAUU)CU AGAGC-UAA- UACAUG---- ----(----) 361 ---------- -------(-- --)--|---- -- -gauucauuc -aa|auuucu gc|--CCU-A UCA--ACUUU C-GAUGGUA- 1141 GG(-AUAGAG G)CCU-ACCA U-|GGUCG-U AAC|GGGU-A A-CGGA|GAA -U-(UAGG-) 1201 GUU-CGAUU- CCG|GAGAGG G-AGCC(U-G AGAAAU)GGC UACC-ACUUC (UAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GC- AAAUU-ACCC -AAUCCC-G( ---aca--)C 1321 GGGG-A-GGU -|A|GUGACA AUAA-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AA CAAUACAGG- CGCUC(---- --gauaa)GA GU-CU-UGUA A-UUGGAAU- 1501 ------GAGU ----ACAAUU -UAAA--CCC C-----UU-A A-CGA-GUAA C---->AAUU 1561 GGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCCAA 1621 U-AGCGUA|U AUUAA--AGU UGUUG-CAG| UUA--AAAAG CUCGUAGUUG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 gauc------ ---------- ---------- ---------- ---------- ---------- 1801 ---------- --------u- --agggacgc g-cauuucaa g---cgcccg ugucgucggg 1861 ucaa------ ---------- -----acc-g gcgac-ugc- guuggcgu-- --ugc-gggc 1921 u--------c gguccgucgg ugccu-acaa a----gc--- -aucggcgug ucaaccggcc 1981 cgcccg---- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- --uccccucc 2161 uucuggauu- ---------- ---------- -cccguuccu gcua------ ---------- 2221 ---uugaguu aguggggacg ucacaggg-g gccc-aucgu cgucaug-ca aau------- 2281 -ggcggcggu g-ggucucug gggcccagau c--------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- -GUUUACCGU 2521 G-AAAA--AA UUAG-A-GUG UUCAA-AG-C AGGCagauc- -------c-- ---------- 2581 --a------- ---auuuucu gccacc-GAA UACAU-UAGC AUGGGA|UA- AUGGAA-UAG 2641 GA---cccug uc-------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- --------cu ccua|-UUUU 2821 -CA-GUUGGU -UU-uggcag c-gcgAGGA- CUA--GGGUA A--UGAUUAA UA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGA|UAGU ---------- 3001 --UGGGGGCA UU|--AAUAU UUAAUUG-UC -AGAG(GU-G AAA---)UUC U-UGGA-U-U 3061 UAUGA-AAG- A-UUAACU-U CUGC(-GAAA )--GC|A--- UCUGCC-AA| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUG ---UUUUCAU -UAA-U|CA- A-GAACGAAA 3301 GUUAGGGGA- UCGAAGACG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CGUAG|UCU UA--ACC-AU AAACGAUGCC GAC|CA|--- 3421 --gcgau-ua gga-g-a--- ----(----- ---------) -cguugaaua caaaacacca 3481 ccaucggu-g cggucguccu ug-gcgcguu ggucu(-uca a-)aagccag cgcgc-gggg 3541 gcggcuuag- -cccgguggc --accgguga augac----- ---------- ---------- 3601 ---------- ---------u c-cc-cua-g -c-agcuu-- ---------- ----guGA(- 3661 GAAA-)UCAU -AAGUC-UUU GGGU|-U|C- CGGGGGGAGU AU--GG-UC( --GCAA-)GG 3721 CUG-AAACUU -AAAG--GAA -UUG|AC-GG -AA-GGGCA- -CCAC-CAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --A-GU|-GG 4021 AGCCUGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--GAA ACUUACCAGG UC[cgg-aca 4081 uagu-aagga uu-----gac aga(uugaua g-c)------ ucuuu----- cuu-gauu-c 4141 uauggg---- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU-G-CAUG |GCC|GU-UC UUA|GUUGG- U|GGA(-GUG 4261 A-)UUUGUC- -UGG(UU-AA UU)CCGUUA- AC-GAACGAG ACCUU-AA|- ---------- 4321 ------(--- --)[CCU-GC UAAAUAugcc g--cgcuaac ccguccauca aaac-ccau- 4381 gcg--ugg-c uc--ac---- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ----gcgguc cgcugcgggg uggugu---c gcu(ucgc)g gcg---acgu caucccgccg 4621 gcagggcccg gguccgugug ggcgguaggg uucggcgu-- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ----ccguG- CU-------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------U CUUAGAGG]- --|------- ---------- GACU-Gcu-g cg-c(----- 5041 --gccua-)g ccag-C-GGA AGUU-UGAGG CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UG A|UGCC|CU- 5221 U-AGA-UGUU CUGG-GCCGC A-CGCGCGCU ACACU--G-A UUAAU----- ---------- 5281 ---(------ ----)[ccaa cgagucc--- ---------- --g----cuu caaucga-gg 5341 cgugguggcu ggugcgggg( -ucaa)accc gugccaugcc aucgcugucc ucgau----- 5401 cgcgccu-gg gcc(gaua-) ggucc----g gguaau-cuu ugcaaa]--- ---------- 5461 -------uuu aau-c-g--- uGCU-G-GGG AUAGAUCAU( UGUAAUUA)U UGAUCUUC-A 5521 ACGAGG-AAU U--CCUAGUA AG-CGC-GAG (-UCAUCAG- )CUCGCGU-U -GAUUACG-- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUCC-U-A CC-GAU--UG AA-UGGucc- 5641 ggu-gaaa-- ucc-ucgga- gccg-uggc- cucu-a---c gcaa-uccgg ---------- 5701 -------(gc aa----)ccg gg-uugugag guc------- ---------- --uc-ccc-- 5761 uuuugg-cgg -cgaa-|guc -gauugaacc uu-acc-a-u uuag-AGGAA GG-AGAA-G- 5821 UCGUAACAAG GU-------- -----C-U-C CGUAGG(UGA A)CCUGCAGA AGGAUCA--- 5881 --gga----- -------~|| ||| // LOCUS Aca.sp1282 5903 bp RNA RNA 11-JAN-191 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: U07408 LOCUS ASU07408 2293 bp DNA INV 02-JUL-1994 DEFINITION Acanthamoeba sp. BCM:1282:324 18S rRNA gene. ACCESSION U07408 KEYWORDS . SOURCE Acanthamoeba sp. ORGANISM Acanthamoeba sp. Eucaryotae; Protozoa; Sarcomastigophora; Sarcodina; Rhizopoda; Lobosa; Amoebida; Acanthamoeba. REFERENCE 1 (bases 1 to 2293) AUTHORS Gast,R.J., Ledee,D.R., Fuerst,P.A. and Byers,T.J. TITLE Population Structure of Acanthamoeba: Nuclear srRNA Gene Phylogenetic Analysis of 18 Group II and III Isolates JOURNAL Unpublished STANDARD full automatic REFERENCE 2 (bases 1 to 2293) AUTHORS Gast,R.J. TITLE Direct Submission JOURNAL Submitted (05-MAR-1994) Rebecca J. Gast, The Ohio State University, Molecular Genetics, 484 West 12th Avenue, Columbus, OH 43210, USA STANDARD full automatic COMMENT NCBI gi: 507404 FEATURES Location/Qualifiers primer_bind 1..23 /citation=[1] /note="PCR amplification primer" rRNA 24..2270 /product="18S ribosomal RNA" /citation=[1] primer_bind 2271..2293 /citation=[1] /note="PCR amplification primer" source 1..2293 /strain="BCM:1282:324" /organism="Acanthamoeba sp." BASE COUNT 527 a 541 c 654 g 571 t ORIGIN BASE COUNT 527 a 541 c 654 g 571 t 3610 others ORIGIN 1 |--------- -----CGACU GGU(UGA)UC CU|GCCAGU- A-GUCA-UAU --GCUUGUCU 61 CAAA|-GAUU AA-GCCAUGC A-UGUCU-AA GU|------- |-------(- ---)[----- 121 ---------- --------au aagcuuguuu ---------- -au-a-cggc gag]------ 181 -----|---A CU|G-CGGA- UGGCU-CAUU AAAU-cagu- uau-aguu-- ----uauuug 241 augg<----- ---------- -----ucuc- --------u- --uuugucuu --uuuuuacc 301 u>ACUUGG-A UAACCGUGG( -U-AAUU)CU AGAGC-UAA- UACAUG---- ----(----) 361 ---------- -------(-- --)--|---- -- -gauucauuc -aa|auuucu gc|--CCU-A UCA--ACUUU C-GAUGGUA- 1141 GG(-AUAGAG G)CCU-ACCA U-|GGUCG-U AAC|GGGU-A A-CGGA|GAA -U-(UAGG-) 1201 GUU-CGAUU- CCG|GAGAGG G-AGCC(U-G AGAAAU)GGC UACC-ACUUC (UAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GC- AAAUU-ACCC -AAUCCC-G( ---acg--)C 1321 GGGG-A-GGU -|A|GUGACA AUAA-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AA CAAUACAGG- CGCUC(---- --gauaa)GA GU-CU-UGUA A-UUGGAAU- 1501 ------GAGU ----ACAAUU -UAAA--CCC C-----UU-A A-CGA-GUAA C---->AAUU 1561 GGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCCAA 1621 U-AGCGUA|U AUUAA--AGU UGUUG-CAG| UUA--AAAAG CUCGUAGUUG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 gauc------ ---------- ---------- ---------- ---------- ---------- 1801 ---------- --------u- --agggacgc g-cauuucaa g---cgcccg ugccaucggg 1861 ucaa------ ---------- -----acc-g guggc-ugc- guuggcgu-- --ugc-gggc 1921 u--------c gguccgucgg ugccccacaa agg--gcu-- -aucggcgug ucaaccggcc 1981 cgcccg---- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- --uccccucc 2161 uucuggauu- ---------- ---------- -cccguuccu gcua------ ---------- 2221 ---uugaguu aguggggacg ucacaggg-g gucc-aucgu cgugcggcgu caaaac---c 2281 gugcggcggu g-ggucccug gggcccagau c--------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- -GUUUACCGU 2521 G-AAAA--AA UUAG-A-GUG UUCAA-AG-C AGGCagauc- -------c-- ---------- 2581 --a------- ---auuuucu gccacc-GAA UACAU-UAGC AUGGGA|UA- AUGGAA-UAG 2641 GA---cccug uc-------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- --------cu ccua|-UUUU 2821 -CA-GUUGGU -UU-uggcag c-gcgAGGA- CUA--GGGUA A--UGAUUAA UA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGA|UAGU ---------- 3001 --UGGGGGCA UU|--AAUAU UUAAUUG-UC -AGAG(GU-G AAA---)UUC U-UGGA-U-U 3061 UAUGA-AAG- A-UUAACU-U CUGC(-GAAA )--GC|A--- UCUGCC-AA| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUG ---UUUUCAU -UAA-U|CA- A-GAACGAAA 3301 GUUAGGGGA- UCGAAGACG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CGUAG|UCU UA--ACC-AU AAACGAUGCC GAC|CA|--- 3421 --gcgau-ua gga-g-a--- ----(----- ---------) -cguugaaua caaaacacca 3481 ccaucggu-g cggucguccu uggcgucucg guccu(-uca c-)ggggccg gggcgcgggg 3541 guggcuuag- -cccgguggc --accgguga augac----- ---------- ---------- 3601 ---------- ---------u c-cc-cua-g -c-agcuu-- ---------- ----guGA(- 3661 GAAA-)UCAU -AAGUC-UUU GGGU|-U|C- CGGGGGGAGU AU--GG-UC( --GCAA-)GG 3721 CUG-AAACUU -AAAG--GAA -UUG|AC-GG -AA-GGGCA- -CCAC-CAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --A-GU|-GG 4021 AGCCUGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--GAA ACUUACCAGG UC[cgg-aca 4081 uagu-aagga uu-----gac aga(uugaua g-c)------ ucuuu----- cuu-gauu-c 4141 uauggg---- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU-G-CAUG |GCC|GU-UC UUA|GUUGG- U|GGA(-GUG 4261 A-)UUUGUC- -UGG(UU-AA UU)CCGUUA- AC-GAACGAG ACCUU-AA|- ---------- 4321 ------(--- --)[CCU-GC UAAAUAugcc g--cgcuaac ccguccauca aaac-ccau- 4381 gcg--cgg-c uc--ac---- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ----gcgguc cgcugcgggg uggugu---c gcu(ucgc)g gcg---acgu caucccgccg 4621 gcagggcccg gguccgugug ggcgguaggg uucggcgu-- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ----ccguG- CU-------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------U CUUAGAGG]- --|------- ---------- GACU-Gcu-g cg-c(----- 5041 --gccua-)g ccag-C-GGA AGUU-UGAGG CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UG A|UGCC|CU- 5221 U-AGA-UGUU CUGG-GCCGC A-CGCGCGCU ACACU--G-A UUAAU----- ---------- 5281 ---(------ ----)[ccaa cgagucc--- ---------- --g----cuu caaucga-gg 5341 cgcgaugc-- -cguugggg( -ucaa)accc aacu----gc gucgcugucc ucgau----- 5401 cgcgccu-gg gcc(gaua-) ggucc----g gguaau-cuu ugcaaa]--- ---------- 5461 -------uuu aau-c-g--- uGCU-G-GGG AUAGAUCAU( UGUAAUUA)U UGAUCUUC-A 5521 ACGAGG-AAU U--CCUAGUA AG-CGC-GAG (-UCAUCAG- )CUCGCGU-U -GAUUACG-- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUCC-U-A CC-GAU--UG AA-UGGucc- 5641 ggu-gaaa-- ucc-ucgga- gccg-uggc- cucu-a---c gcaa-uccgg ---------- 5701 -------(gc aa----)ccg gg-uugugag guc------- ---------- --uc-ccc-- 5761 uuuugg-cgg -cgaa-|guc -gauugaacc uu-acc-a-u uuag-AGGAA GG-AGAA-G- 5821 UCGUAACAAG GU-------- -----C-U-C CGUAGG(UGA A)CCUGCAGA AGGAUCA--- 5881 --gga----- -------~|| ||| // LOCUS Aca.288.37 5903 bp RNA RNA 11-JAN-191 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: U07410 LOCUS ASU07410 2282 bp DNA INV 02-JUL-1994 DEFINITION Acanthamoeba sp. BCM:0288:37 18S rRNA gene. ACCESSION U07410 KEYWORDS . SOURCE Acanthamoeba sp. ORGANISM Acanthamoeba sp. Eucaryotae; Protozoa; Sarcomastigophora; Sarcodina; Rhizopoda; Lobosa; Amoebida; Acanthamoeba. REFERENCE 1 (bases 1 to 2282) AUTHORS Gast,R.J., Ledee,D.R., Fuerst,P.A. and Byers,T.J. TITLE Population Structure of Acanthamoeba: Nuclear srRNA Gene Phylogenetic Analysis of 18 Group II and III Isolates JOURNAL Unpublished STANDARD full automatic REFERENCE 2 (bases 1 to 2282) AUTHORS Gast,R.J. TITLE Direct Submission JOURNAL Submitted (05-MAR-1994) Rebecca J. Gast, The Ohio State University, Molecular Genetics, 484 West 12th Avenue, Columbus, OH 43210, USA STANDARD full automatic COMMENT NCBI gi: 507406 FEATURES Location/Qualifiers primer_bind 1..23 /citation=[1] /note="PCR amplification primer" rRNA 24..2259 /product="18S ribosomal RNA" /citation=[1] primer_bind 2260..2282 /citation=[1] /note="PCR amplification primer" source 1..2282 /strain="BCM:0288:37" /organism="Acanthamoeba sp." BASE COUNT 523 a 541 c 651 g 565 t 2 others ORIGIN BASE COUNT 523 a 541 c 651 g 565 t 3623 others ORIGIN 1 |--------- -----CGACN GGU(UGA)UC CU|GCCAGU- A-GUCA-UAU --GCUUGUCU 61 CAAA|-GAUU AA-GCCAUGC A-UGUCU-AA GU|------- |-------(- ---)[----- 121 ---------- --------au aagcuuguuu ---------- -au-a-cggc gag]------ 181 -----|---A CU|G-CGGA- UGGCU-CAUU AAAU-cagu- uau-aguu-- ----uauuug 241 augg<----- ---------- -----ucuc- --------u- --uuugucuu --uuuuuacc 301 u>ACUUGG-A UAACCGUGG( -U-AAUU)CU AGAGC-UAA- UACAUG---- ----(----) 361 ---------- -------(-- --)--|---- -- -gauucauuc -aa|auuucu gc|--CCU-A UCA--ACUUU C-GAUGGUA- 1141 GG(-AUAGAG G)CCU-ACCA U-|GGUCG-U AAC|GGGU-A A-CGGA|GAA -U-(UAGG-) 1201 GUU-CGAUU- CCG|GAGAGG G-AGCC(U-G AGAAAU)GGC UACC-ACUUC (UAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GC- AAAUU-ACCC -AAUCCC-G( ---aca--)C 1321 GGGG-A-GGU -|A|GUGACA AUAA-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AA CAAUACAGG- CGCUC(---- --gauaa)GA GU-CU-UGUA A-UUGGAAU- 1501 ------GAGU ----ACAAUU -UAAA--CCC C-----UU-A A-CGA-GUAA C---->AAUU 1561 GGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCCAA 1621 U-AGCGUA|U AUUAA--AGU UGUUG-CAG| UUA--AAAAG CUCGUAGUUG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 gauc------ ---------- ---------- ---------- ---------- ---------- 1801 ---------- --------u- --agggacgc g-cauuucaa g---cgcccg ugccgucggg 1861 ucaa------ ---------- -----acc-g gcggc-ugc- guuggcgu-- --ugc-gggc 1921 u--------c gguccgucgg ugccccacaa agg--gcu-- -aucggcgug ucaaccggcc 1981 cgcccg---- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- --uccccucc 2161 uucuggauu- ---------- ---------- -cccguuccu gcua------ ---------- 2221 ---uugaguu aguggggacg ucacaggg-g gcuc-aucgu cgucgugcaa ac-------- 2281 -ggcggcggu g-ggucccug gggcccagau c--------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- -GUUUACCGU 2521 G-AAAA--AA UUAG-A-GUG UUCAA-AG-C AGGCagauc- -------c-- ---------- 2581 --a------- ---auuuucu gccacc-GAA UACAU-UAGC AUGGGA|UA- AUGGAA-UAG 2641 GA---cccug uc-------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- --------cu ccua|-UUUU 2821 -CA-GUUGGU -UU-uggcag c-gcgAGGA- CUA--GGGUA A--UGAUUAA UA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGA|UAGU ---------- 3001 --UGGGGGCA UU|--AAUAU UUAAUUG-UC -AGAG(GU-G AAA---)UUC U-UGGA-U-U 3061 UAUGA-AAG- A-UUAACU-U CUGC(-GAAA )--GC|A--- UCUGCC-AA| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUG ---UUUUCAU -UAA-U|CA- A-GAACGAAA 3301 GUUAGGGGA- UCGAAGACG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CGUAG|UCU UA--ACC-AU AAACGAUGCC GAC|CA|--- 3421 --gcgau-ua gga-g-a--- ----(----- ---------) -cguugaaua caaaacacca 3481 ccaucggu-g cggucguccu ug---gcguc ggucu(-uuc g-)gggccgg cgc---gggg 3541 acggcuuag- -cccgguggc --accgguga augac----- ---------- ---------- 3601 ---------- ---------u c-cc-cua-g -c-agcuu-- ---------- ----guGA(- 3661 GAAA-)UCAU -AAGUC-UUU GGGU|-U|C- CGGGGGGAGU AU--GG-UC( --GCAA-)GG 3721 CUG-AAACUU -AAAG--GAA -UUG|AC-GG -AA-GGGCA- -CCAC-CAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --A-GU|-GG 4021 AGCCUGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--GAA ACUUACCAGG UC[cgg-aca 4081 uagu-aagga uu-----gac aga(uugaua g-c)------ ucuuu----- cuu-gauu-c 4141 uauggg---- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU-G-CAUG |GCC|GU-UC UUA|GUUGG- U|GGA(-GUG 4261 A-)UUUGUC- -UGG(UU-AA UU)CCGUUA- AC-GAACGAG ACCUU-AA|- ---------- 4321 ------(--- --)[CCU-GC UAAAUAugcc g--cgcuaac ccguccauca aaac-ccac- 4381 gcg--cgg-c uc--ac---- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ----gcgguc cgcugcgggg uggugu---c gcu(ucgc)g gcg---acgu caucccgccg 4621 gcagggcccg gguccgugug ggcgguaggg uucggcgu-- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ----ccguG- CU-------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------U CUUAGAGG]- --|------- ---------- GACU-Gcu-g cg-c(----- 5041 --gccua-)g ccag-C-GGA AGUU-UGAGG CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UN A|UGCC|CU- 5221 U-AGA-UGUU CUGG-GCCGC A-CGCGCGCU ACACU--G-A UUAAU----- ---------- 5281 ---(------ ----)[ccaa cgagucc--- ---------- --g----cuu caaucga-gg 5341 cgcgaugc-- cgugcgggg( -ucaa)accc gcacu---gc gucgcugucc ucgau----- 5401 cgcgccu-gg gcc(gaua-) ggucc----g gguaau-cuu ugcaaa]--- ---------- 5461 -------uuu aau-c-g--- uGCU-G-GGG AUAGAUCAU( UGUAAUUA)U UGAUCUUC-A 5521 ACGAGG-AAU U--CCUAGUA AG-CGC-GAG (-UCAUCAG- )CUCGCGU-U -GAUUACG-- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUCC-U-A CC-GAU--UG AA-UGGucc- 5641 ggu-gaaa-- ucc-ucgga- gccg-uggc- cucu-a---c gcaa-uccgg ---------- 5701 -------(gc aa----)ccg gg-uugugag guc------- ---------- --uc-ccc-- 5761 uuuugg-cgg -cgaa-|guc -gauugaacc uu-acc-a-u uuag-AGGAA GG-AGAA-G- 5821 UCGUAACAAG GU-------- -----C-U-C CGUAGG(UGA A)CUGCGGAU -GGAUCA--- 5881 --gga----- -------~|| ||| // LOCUS (3)-Alveol 5903 bp RNA RNA 13-JAN-1999 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: DIVIDER BASE COUNT 0 a 0 c 0 g 0 t 5903 others ORIGIN 1 |......... .......... .......... .......... .......... .......... 61 .......... .......... .......... .......... .......... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......... .......... .......... .......... 241 .......... .......... .......... .......... .......... .......... 301 .......... .......... .......... .......... .......... .......... 361 .......... .......... .......... .......... .......... .......... 421 .......... .......... .......... .......... .......... .......... 481 .......... .......... .......... .......... .......... .......... 541 .......... .......... .......... .......... .......... .......... 601 .......... .......... .......... .......... .......... .......... 661 .......... .......... .......... .......... .......... .......... 721 .......... .......... .......... .......... .......... .......... 781 .......... .......... .......... .......... .......... .......... 841 .......... .......... .......... .......... .......... .......... 901 .......... .......... .......... .......... .......... .......... 961 .......... .......... .......... .......... .......... .......... 1021 .......... .......... .......... .......... .......... .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .......... .......... .......... .......... .......... 1201 .......... .......... .......... .......... .......... .......... 1261 .......... .......... .......... .......... .......... .......... 1321 .......... .......... .......... .......... .......... .......... 1381 .......... .......... .......... .......... .......... .......... 1441 .......... .......... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .....>.... 1561 .......... .......... .......... .......... .......... ..-|...... 1621 .......... .......... .......... .......... .......... .......... 1681 .......... .......... .......... .......... .......... .......... 1741 .......... .......... .......... .......... .......... .......... 1801 .......... .......... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .......... .......... 1921 .......... .......... .......... .......... .......... .......... 1981 .......... .......... .......... .......... .......... .......... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... .......... .......... .......... .......... .......... 2161 .......... .......... .......... .......... .......... .......... 2221 .......... .......... .......... .......... .......... .......... 2281 .......... .......... .......... .......... .......... .......... 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... .......... 2701 .......... .......... .......... .......... .......... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... .......... 2881 .......... .......... .......... .......... .......... .......... 2941 .......... .......... .......... .......... .......... .......... 3001 .......... .......... .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .......... .......... 3181 .......... .......... .......... .......... .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .......... .......... .......... 3361 .......... .......... .......... .......... .......... .......... 3421 .......... .......... .......... .......... .......... .......... 3481 .......... .......... .......... .......... .......... .......... 3541 .......... .......... .......... .......... .......... .......... 3601 .......... .......... .......... .......... .......... .......... 3661 .......... .......... .......... .......... .......... .......... 3721 .......... .......... .......... .......... .......... .......... 3781 .......... .......... .......... .......... .......... .......... 3841 .......... .......... .......... .......... .......... .......... 3901 .......... .......... .......... .......... .......... .......... 3961 .......... .......... .......... .......... .......... .......... 4021 .......... .......... .......... .......... .......... .......... 4081 .......... .......... .......... .......... .......... .......... 4141 .......... .]........ .......... .......... .......... .......... 4201 .......... .......... .......... .......... .......... .......... 4261 .......... .......... .......... .......... .......... .......... 4321 .......... .......... .......... .......... .......... .......... 4381 .......... .......... .......... .......... .......... .......... 4441 .......... .......... .......... .......... .......... .......... 4501 .......... .......... .......... .......... .......... .......... 4561 .......... .......... .......... .......... .......... .......... 4621 .......... .......... .......... .......... .......... .......... 4681 .......... .......... .......... .......... .......... .......... 4741 .......... .......... .......... .......... .......... .......... 4801 .......... .......... .......... .......... .......... .......... 4861 .......... .......... .......... .......... .......... .......... 4921 .......... .......... .......... .......... .......... .......... 4981 .......... .......... .......... .......... .......... .......... 5041 .......... .......... .......... .......... .......... .......... 5101 .......... .......... .......... .......... .......... .......... 5161 .......... .......... .......... .......... .......... .......... 5221 .......... .......... .......... .......... .......... .......... 5281 .......... .......... .......... .......... .......... .......... 5341 .......... .......... .......... .......... .......... .......... 5401 .......... .......... .......... .......... .......... .......... 5461 .......... .......... .......... .......... .......... .......... 5521 .......... .......... .......... .-........ .......... .......... 5581 .......... .......... .......... .......... .......... .......... 5641 .......... .......... .......... .......... .......... .......... 5701 .......... .......... .......... .......... .......... .......... 5761 .......... .......... .......... .......... .......... .......... 5821 .......... .......... .......... .......... .......... .......... 5881 .......... ........|| ||| // LOCUS (4)-Apicom 5903 bp RNA RNA 13-JAN-1999 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: DIVIDER BASE COUNT 0 a 0 c 0 g 0 t 5903 others ORIGIN 1 |......... .......... .......... .......... .......... .......... 61 .......... .......... .......... .......... .......... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......... .......... .......... .......... 241 .......... .......... .......... .......... .......... .......... 301 .......... .......... .......... .......... .......... .......... 361 .......... .......... .......... .......... .......... .......... 421 .......... .......... .......... .......... .......... .......... 481 .......... .......... .......... .......... .......... .......... 541 .......... .......... .......... .......... .......... .......... 601 .......... .......... .......... .......... .......... .......... 661 .......... .......... .......... .......... .......... .......... 721 .......... .......... .......... .......... .......... .......... 781 .......... .......... .......... .......... .......... .......... 841 .......... .......... .......... .......... .......... .......... 901 .......... .......... .......... .......... .......... .......... 961 .......... .......... .......... .......... .......... .......... 1021 .......... .......... .......... .......... .......... .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .......... .......... .......... .......... .......... 1201 .......... .......... .......... .......... .......... .......... 1261 .......... .......... .......... .......... .......... .......... 1321 .......... .......... .......... .......... .......... .......... 1381 .......... .......... .......... .......... .......... .......... 1441 .......... .......... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .....>.... 1561 .......... .......... .......... .......... .......... ..-|...... 1621 .......... .......... .......... .......... .......... .......... 1681 .......... .......... .......... .......... .......... .......... 1741 .......... .......... .......... .......... .......... .......... 1801 .......... .......... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .......... .......... 1921 .......... .......... .......... .......... .......... .......... 1981 .......... .......... .......... .......... .......... .......... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... .......... .......... .......... .......... .......... 2161 .......... .......... .......... .......... .......... .......... 2221 .......... .......... .......... .......... .......... .......... 2281 .......... .......... .......... .......... .......... .......... 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... .......... 2701 .......... .......... .......... .......... .......... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... .......... 2881 .......... .......... .......... .......... .......... .......... 2941 .......... .......... .......... .......... .......... .......... 3001 .......... .......... .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .......... .......... 3181 .......... .......... .......... .......... .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .......... .......... .......... 3361 .......... .......... .......... .......... .......... .......... 3421 .......... .......... .......... .......... .......... .......... 3481 .......... .......... .......... .......... .......... .......... 3541 .......... .......... .......... .......... .......... .......... 3601 .......... .......... .......... .......... .......... .......... 3661 .......... .......... .......... .......... .......... .......... 3721 .......... .......... .......... .......... .......... .......... 3781 .......... .......... .......... .......... .......... .......... 3841 .......... .......... .......... .......... .......... .......... 3901 .......... .......... .......... .......... .......... .......... 3961 .......... .......... .......... .......... .......... .......... 4021 .......... .......... .......... .......... .......... .......... 4081 .......... .......... .......... .......... .......... .......... 4141 .......... .]........ .......... .......... .......... .......... 4201 .......... .......... .......... .......... .......... .......... 4261 .......... .......... .......... .......... .......... .......... 4321 .......... .......... .......... .......... .......... .......... 4381 .......... .......... .......... .......... .......... .......... 4441 .......... .......... .......... .......... .......... .......... 4501 .......... .......... .......... .......... .......... .......... 4561 .......... .......... .......... .......... .......... .......... 4621 .......... .......... .......... .......... .......... .......... 4681 .......... .......... .......... .......... .......... .......... 4741 .......... .......... .......... .......... .......... .......... 4801 .......... .......... .......... .......... .......... .......... 4861 .......... .......... .......... .......... .......... .......... 4921 .......... .......... .......... .......... .......... .......... 4981 .......... .......... .......... .......... .......... .......... 5041 .......... .......... .......... .......... .......... .......... 5101 .......... .......... .......... .......... .......... .......... 5161 .......... .......... .......... .......... .......... .......... 5221 .......... .......... .......... .......... .......... .......... 5281 .......... .......... .......... .......... .......... .......... 5341 .......... .......... .......... .......... .......... .......... 5401 .......... .......... .......... .......... .......... .......... 5461 .......... .......... .......... .......... .......... .......... 5521 .......... .......... .......... .-........ .......... .......... 5581 .......... .......... .......... .......... .......... .......... 5641 .......... .......... .......... .......... .......... .......... 5701 .......... .......... .......... .......... .......... .......... 5761 .......... .......... .......... .......... .......... .......... 5821 .......... .......... .......... .......... .......... .......... 5881 .......... ........|| ||| // LOCUS (5)-Coccid 5903 bp RNA RNA 13-JAN-1999 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: DIVIDER BASE COUNT 0 a 0 c 0 g 0 t 5903 others ORIGIN 1 |......... .......... .......... .......... .......... .......... 61 .......... .......... .......... .......... .......... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......... .......... .......... .......... 241 .......... .......... .......... .......... .......... .......... 301 .......... .......... .......... .......... .......... .......... 361 .......... .......... .......... .......... .......... .......... 421 .......... .......... .......... .......... .......... .......... 481 .......... .......... .......... .......... .......... .......... 541 .......... .......... .......... .......... .......... .......... 601 .......... .......... .......... .......... .......... .......... 661 .......... .......... .......... .......... .......... .......... 721 .......... .......... .......... .......... .......... .......... 781 .......... .......... .......... .......... .......... .......... 841 .......... .......... .......... .......... .......... .......... 901 .......... .......... .......... .......... .......... .......... 961 .......... .......... .......... .......... .......... .......... 1021 .......... .......... .......... .......... .......... .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .......... .......... .......... .......... .......... 1201 .......... .......... .......... .......... .......... .......... 1261 .......... .......... .......... .......... .......... .......... 1321 .......... .......... .......... .......... .......... .......... 1381 .......... .......... .......... .......... .......... .......... 1441 .......... .......... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .....>.... 1561 .......... .......... .......... .......... .......... ..-|...... 1621 .......... .......... .......... .......... .......... .......... 1681 .......... .......... .......... .......... .......... .......... 1741 .......... .......... .......... .......... .......... .......... 1801 .......... .......... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .......... .......... 1921 .......... .......... .......... .......... .......... .......... 1981 .......... .......... .......... .......... .......... .......... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... .......... .......... .......... .......... .......... 2161 .......... .......... .......... .......... .......... .......... 2221 .......... .......... .......... .......... .......... .......... 2281 .......... .......... .......... .......... .......... .......... 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... .......... 2701 .......... .......... .......... .......... .......... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... .......... 2881 .......... .......... .......... .......... .......... .......... 2941 .......... .......... .......... .......... .......... .......... 3001 .......... .......... .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .......... .......... 3181 .......... .......... .......... .......... .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .......... .......... .......... 3361 .......... .......... .......... .......... .......... .......... 3421 .......... .......... .......... .......... .......... .......... 3481 .......... .......... .......... .......... .......... .......... 3541 .......... .......... .......... .......... .......... .......... 3601 .......... .......... .......... .......... .......... .......... 3661 .......... .......... .......... .......... .......... .......... 3721 .......... .......... .......... .......... .......... .......... 3781 .......... .......... .......... .......... .......... .......... 3841 .......... .......... .......... .......... .......... .......... 3901 .......... .......... .......... .......... .......... .......... 3961 .......... .......... .......... .......... .......... .......... 4021 .......... .......... .......... .......... .......... .......... 4081 .......... .......... .......... .......... .......... .......... 4141 .......... .]........ .......... .......... .......... .......... 4201 .......... .......... .......... .......... .......... .......... 4261 .......... .......... .......... .......... .......... .......... 4321 .......... .......... .......... .......... .......... .......... 4381 .......... .......... .......... .......... .......... .......... 4441 .......... .......... .......... .......... .......... .......... 4501 .......... .......... .......... .......... .......... .......... 4561 .......... .......... .......... .......... .......... .......... 4621 .......... .......... .......... .......... .......... .......... 4681 .......... .......... .......... .......... .......... .......... 4741 .......... .......... .......... .......... .......... .......... 4801 .......... .......... .......... .......... .......... .......... 4861 .......... .......... .......... .......... .......... .......... 4921 .......... .......... .......... .......... .......... .......... 4981 .......... .......... .......... .......... .......... .......... 5041 .......... .......... .......... .......... .......... .......... 5101 .......... .......... .......... .......... .......... .......... 5161 .......... .......... .......... .......... .......... .......... 5221 .......... .......... .......... .......... .......... .......... 5281 .......... .......... .......... .......... .......... .......... 5341 .......... .......... .......... .......... .......... .......... 5401 .......... .......... .......... .......... .......... .......... 5461 .......... .......... .......... .......... .......... .......... 5521 .......... .......... .......... .-........ .......... .......... 5581 .......... .......... .......... .......... .......... .......... 5641 .......... .......... .......... .......... .......... .......... 5701 .......... .......... .......... .......... .......... .......... 5761 .......... .......... .......... .......... .......... .......... 5821 .......... .......... .......... .......... .......... .......... 5881 .......... ........|| ||| // LOCUS E.tenella 5903 bp RNA RNA 11-JAN-191 DEFINITION Eimeria tenella. ACCESSION No information KEYWORDS No information. SOURCE Eimeria tenella. ORGANISM Eimeria tenella. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: U40264 LOCUS ETU40264 1756 bp DNA INV 02-FEB-1996 DEFINITION Eimeria tenella small subunit ribosomal RNA gene, complete sequence. ACCESSION U40264 NID g1173858 KEYWORDS . SOURCE Eimeria tenella. ORGANISM Eimeria tenella Eukaryotae; mitochondrial eukaryotes; Alveolata; Apicomplexa; Coccidia; Eimeriida; Eimeriidae; Eimeria. REFERENCE 1 (bases 1 to 1756) AUTHORS Relman,D.A., Schmidt,T.M., Gajadhar,A, Sogin,M, Cross,J, Yoder,K, Sethabutr,O and Echeverria,P. TITLE Direct Submission JOURNAL Submitted (07-NOV-1995) David A. Relman, Med, Micro & Immuno, Stanford University, 3801 Miranda Ave 154-T, Palo Alto, CA 94304, USA COMMENT NCBI gi: 1173858 FEATURES Location/Qualifiers source 1..1756 /organism="Eimeria tenella" rRNA 1..1756 /product="small subunit ribosomal RNA" BASE COUNT 449 a 345 c 471 g 491 t ORIGIN BASE COUNT 449 a 345 c 471 g 491 t 4147 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~(~~~)~~ ~~|~~~~~U- A-GUCA-UAU --GCUUGUCU 61 CAAA|-GAUU AA-GCCAUGC A-UGUCU-AA GU|------- |-------(- ---)[----- 121 ---------- --------au aagcuu--uu ---------- -auac-ggu- gaa]------ 181 -----|---A CU|G-CGAA- UGGCU-CAUU AAAA-cagu- uau-aguu-- ----uauuug 241 augg<----- ---------- ---------- ---------- ---------- --ucucauuu 301 u>ACAUGG-A UAACCAUGG( -U-AAUU)CU AUGGC-UAA- UACAUG---- ----(----) 361 ---------- -------(-- --)--|---- -- -ggaucauuc -aa|guuucu ga|--CCU-A UCA--GCUUU C-GACGGUA- 1141 GG(-GUAUUG G)CCU-ACCG U-|GGCAG-U GAC|GGGU-A A-CGGG|GAA -U-(UAGG-) 1201 GUU-CGAUU- CCG|GAGAGG G-AGCC(U-G AGAAAC)GGC UACC-ACAUC (UAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GC- AAAUU-ACCC -AAUGAA-A( ---acag-)c 1321 uucG-A-GGU -|A|GUGACG AGAA-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AA CAAUACAGG- -GCAU(---- ---uuu-)AU GC-UU-UGUA A-UUGGAAU- 1501 ------GAUG ----GGAAUG -UAAA--ACC C-----UU-C C-AGA-GUAA C---->AAUU 1561 GGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCCAA 1621 U-AGUGUA|U AUUAG--AGU UGUUG-CAG| UUA--AAAAG CUCGUAGUUG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 gauuuc-ugu c-gugg-uca uccggcgu-c gc-ccguaug ggugug---- ----ugccug 1801 gcaug---cc cucggcuuau uuccgguag- ------ccuu c--cgc-g-c uu-------- 1861 ---aauugc- --gugug-uu gguguucugg aac------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- --UUUUACUU UG-AGAA--A 2461 AAUAGAGUGU UU-CA-AG-C AGGCuu---- ---------- ---------- ---------- 2521 -------GUC GCCC-U--GA AUACUG-CAG CAUGGAA|UA -AUAAGA-UA -GGACcUCGG 2581 uu-------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ---c|-UAUU 2821 -UU-GUUGGU -UU-CU---- --ag----ga CCA-AG-GUA A--UGAUUAA UA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGA|CAGU ---------- 3001 --UGGGGGCA UU|--CGUAU UUAACUG-UC -AGAG(GU-G AAA---)UUC U-UAGA-U-U 3061 UGUUA-AAG- A-CGAACU-A CUGC(-GAAA )--GC|A--- UUUGCC-AA| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUG ---UUUUCAU -UAA-U|CA- A-GAACGACA 3301 GUAGGGGGU- UUGAAGACG( AUUA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CGUAA|UCU CU--ACC-AU AAACUAUGCC GAC|UA|--- 3421 --gagau-ag gga-a-acgc c---(----u accuu----) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- -----ggc-u u-cuccugca -c-cuc---- ---------- ----AUGA(- 3661 GAAA-)UCA- -AAGUC-UCU GGGU|-U|C- UGGGGGGAGU AU--GG-UC( --GCAA-)GG 3721 CUG-AAACUU -AAAG--GAA -UUG|AC-GG -AG-GGGCA- -CCAC-CAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --C-GU|-GG 4021 AGCCUGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--GAA ACUCACCAGG UC[cag-aca 4081 uggg-aagga uu-----gac aga(uugaua g-c)------ ucuuu----- cuu-gauu-c 4141 uauggg---- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU-G-CAUG |GCC|GU-UC UUA|GUUGG- U|GGA(-GUG 4261 A-)UCUGUC- -UGG(UU-AA UU)UCGAUA- AC-GAACGAG ACCUU-AG|- ---------- 4321 ---------- ---[CCU-GC UAAAUAG-gg u--caguaac (uuugc---- ---------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- ---------- gguuacug-- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ----uauca- CU-------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------U CUUAGAGG]- --|------- ---------- GACU-UUG-C -G-U(----- 5041 --gucua-)A CGCA-A-GGA AGUU-UGAGG CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UG A|UGCC|CUU 5221 A-G-A-UGUU CUGG-GCUGC A-CGCGCGCU ACACU--G-A UGCAU----- ---------- 5281 ---(------ ----)[gcaa cgaguuu--- ---------- -----u---- ---------- 5341 ---------- ---------( -----)---- ---------- ---------- ---------- 5401 -u-accu-ug gcc(gaca-) ggucu----g gguaau-cuu uugagu]--- ---------- 5461 -------GUG CAU-C-G--- UGAU-G-GGG AUAGAUUAU( UGCAAUUA)U UAAUCUUC-A 5521 ACGAGG-AAU G--CCUAGUA GG-CGC-AAG (-UCAGCAG- )CUUGC-G-C -CGAUUAAG- 5581 U-CCCUGCCU CU|UGUA-CA CACCGCCCGU CGCUGC-A-A CC-GAU--CG GA-GGGUCC- 5641 UGU-gaau-- uca-ucgga- cgga--caa- gccu-uac-- ---------- ---------- 5701 -------(uu u-----)--- ---------- ---------- ---------- --gu-ggg-- 5761 g-cugg-ucg -ggaa-|guu -gcguaaaua ga-GCC-C-U CUAA-AGGAU GC-AAAA-G- 5821 UCGUAACACA GU-------- -----U-U~~ ~~~~~~(~~~ ~)~~~~~~~~ ~~~~~~~~~~ 5881 ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS N.caninu.1 5903 bp RNA RNA 11-JAN-191 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: U03069 LOCUS U03069 1789 bp DNA INV 04-NOV-1993 DEFINITION Neospora caninum 18S rRNA gene. ACCESSION U03069 KEYWORDS . SOURCE Neospora caninum ORGANISM Neospora caninum Eucaryotae; Protozoa; Apicomplexa; Sporozoa; Coccidia; Eucoccidiida; Eimeriina; Sarcocystidae; Neospora. REFERENCE 1 (bases 1 to 1789) AUTHORS Holmdahl,J.O., Mattsson,J.G., Uggla,A. and Johansson,K. TITLE The phylogeny of Neospora caninum and Toxoplasma gondii based on ribosomal RNA sequences JOURNAL Unpublished STANDARD full automatic REFERENCE 2 (bases 1 to 1789) AUTHORS Holmdahl,J.O. TITLE Direct Submission JOURNAL Submitted (02-NOV-1993) Joakim O.M. Holmdahl, Department of Veterinary Microbiology, Section of Parasitology, Uppsala S-750 07, Sweden STANDARD full automatic FEATURES Location/Qualifiers rRNA 1..1789 /product="18S rRNA" source 1..1789 /organism="Neospora caninum" /dev_stage="tachyzoite" /isolate="NC-1" BASE COUNT 468 a 357 c 458 g 504 t 2 others ORIGIN BASE COUNT 468 a 357 c 458 g 504 t 4116 others ORIGIN 1 |~~~~~~~~~ ~~~~~-ACCU GGU(UGA)UC CU|GCCAGU- A-GUCA-UAU --GCUUGUCU 61 UAAA|-GAUU AA-GCCAUGC A-UGUCU-AA GU|------- |-------(- ---)[----- 121 ---------- --------au aagcuu--uu ---------- -auac-ggc- uaa]------ 181 -----|---A CU|G-CGAA- UGGCU-CAUU AAAA-cagu- uau-aguu-- ----uauuug 241 augg<----- ---------- ---------- ---------- ---------- ---ucuuuac 301 u>ACAUGG-A UAACCGUGG( -U-AAUU)CU AUGGC-UAA- UACAUG---- ----(----) 361 ---------- -------(-- --)--|---- -- -ggaucauuc -aa|guuucu ga|--CCU-A UCA--GCUUU C-GACGGUA- 1141 CU(-GUAUUG G)ACU-ACCG U-|GGCAG-U GAC|GGGU-A A-CGGG|GAA -U-(UAGG-) 1201 GUU-CGAUU- CCG|GAGAGG G-AGCC(U-G AGAAAC)GGC UACC-ACAUC (UAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GC- AAAUU-ACCC -AAUCCU-G( ---auu--)C 1321 AGGG-A-GGU -|A|GUGACA AGAA-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AA CAACACUGG- -AAAU(---- ---uuc-)AU UU-CU-AGUG A-UUGGAAU- 1501 ------GAUA ----GGAAUC -CAAA--CCC C-----UU-U C-AGA-GUAA C---->AAUU 1561 GGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCCAA 1621 U-AGCGUA|U AUUAA--AGU UGUUG-CAG| UUA--AAAAG CUCGUAGUUG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 gauuuc-ugc u-ggaa-gca gccagu--cc gc-ccucagg ggugug-cac ---------- 1801 ---------- -----uu-g- gugaau-ucu -agcauccuu cuggau-uuc uu-------- 1861 cacacuucau u-guguggag uuuuuuccag gac------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- --UUUUACUU UG-AGAA--A 2461 AUUAGAGUGU UU-CA-AG-C AGGCuu---- ---------- ---------- ---------- 2521 -------GUC GCCU-U--GA AUACUG-CAG CAUGGAA|UA -AUAAGA-UA -GGAUuUCGG 2581 cc-------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ---c|-UAUU 2821 -UU-GUUGGU -UU-CU---- --ag----ga CUG-AA-GUA A--UGAUUAA UA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGA|CGGU ---------- 3001 --UGGGGGCA UU|--CGUAU UUAACUG-UC -AGAG(GU-G AAA---)UUC U-UAGA-U-U 3061 UGUUA-AAG- A-CGAACU-A CUGC(-GAAA )--GC|A--- UUUGCC-AA| AG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUG ---UUUUCAU -UAA-U|CA- A-GAACGAAA 3301 GUUAGGGGC- UCGAAGACG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CGUAG|UCU UA--ACC-AU AAACUAUGCC GAC|UA|--- 3421 --gagau-ag gaa-a-acgu ca--(----- ugcu-----) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ----ugac-u u-cu-ccu-g ca-ccuu--- ---------- ----AUGA(- 3661 GAAA-)UCA- -AAGUC-UUU GGGU|-U|C- UGGGGGGAGU AU--GG-UC( --GCAA-)GG 3721 CUG-AAACUU -AAAG--GAA -UUG|AC-GG -AA-GGGCA- -CCAC-CAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --C-GU|-GG 4021 AGCCUGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--GAA ACUCACCAGG UC[cag-aca 4081 uagg-aagga uu-----gac aga(uugaua g-c)------ ucuuu----- cuu-gauu-c 4141 uauggg---- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU-G-CAUG |GCC|GU-UC UUA|GUUGG- U|GGA(-GUG 4261 A-)UUUGUC- -UGG(UU-AA UU)CCGUUA- AC-GAACGAG ACCUU-AA|- ---------- 4321 ---------- ---[CCU-GC UAAAUAG-ga u--caggaac (uucgu)--- ---------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- ---------- -guucuug-- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ----uauca- CU-------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------U CUUAGAGG]- --|------- ---------- GACU-UUG-C -G-U(----- 5041 --gucua-)A CGCA-A-GGA AGUU-UGAGG CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UG A|UGCC|CUU 5221 A-G-A-UGUU CUGG-GCUGC A-CGCGCGCU ACACU--G-A UGCAU----- ---------- 5281 ---(------ ----)[ccaa cgaguuu--- ---------- -----a---- ---------- 5341 ---------- ---------( -----)---- ---------- ---------- ---------- 5401 -uaaccu-ug gcc(gaua-) ggucu----a gguaau-cuu gugagu]--- ---------- 5461 -------AUG CAU-C-G--- UGAU-G-GGG AUAGAUUAU( UGCAAUUA)U UAAUCUUC-A 5521 ACGAGG-AAU G--CCUAGUA GG-CGC-AAG (-UCAGCAC- )GUUGC-G-C -CGAUUWCG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUCC-U-A CC-GAU--UG AG-UGUUCC- 5641 ggu-gaau-- uau-ucgga- ccgu-uuug- uggc-gcg-- ---------- ---------- 5701 -------(uu cg----)--- ---------- ---------- ---------- -----ugc-- 5761 c-cgaa-aug -ggaa-|guu -uugugaacc uu-AAC-A-C UUAG-AGGAA GG-AGAA-G- 5821 UCGUAACAAG GU-------- -----U-U-C CGUAGG(UGA A)CCUGCAGA AGGAUCA~~~ 5881 ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS N.caninu.2 5903 bp RNA RNA 11-JAN-191 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: L24380 LOCUS N.caninum.2 1736 bp ds-DNA INV 03-JAN-1994 DEFINITION Neospora caninum 18S ribosomal RNA (18S rRNA) gene. ACCESSION L24380 KEYWORDS 18S ribosomal RNA. SOURCE Neospora caninum (strain NC-1) tachyzoite DNA. ORGANISM Neospora caninum Eukaryota; Animalia; Protozoa; Apicomplexa; Sporozoasida. REFERENCE 1 (bases 1 to 1736) AUTHORS Ellis,J.T., Luton,K., Baverstock,P.R., Brindley,P. and Johnson,A.M. TITLE Phylogeny of Neospora caninum and Toxoplasma gondii JOURNAL Unpublished (1993) STANDARD full automatic FEATURES Location/Qualifiers rRNA 1..1736 /product="18S ribosomal RNA" /gene="18S rRNA" source 1..1736 /organism="Neospora caninum" /strain="NC-1" /dev_stage="tachyzoite" /sequenced_mol="DNA" BASE COUNT 454 a 345 c 442 g 495 t ORIGIN BASE COUNT 454 a 345 c 442 g 495 t 4167 others ORIGIN 1 |~~~~~~~~~ ~~~~~nnnnn nnn(nnn)nn nn|nnnnnn- n-nUUA-UAU --GCUUGUCU 61 UAAA|-GAUU AA-GCCAUGC A-UGUUU-AA GU|------- |-------(- ---)[----- 121 ---------- --------au aagcuu--uu ---------- -auac-ggc- uaa]------ 181 -----|---A CU|G-CGAA- UGGCU-CAUU AAAA-cagu- uau-aguu-- ----uauuug 241 augg<----- ---------- ---------- ---------- ---------- ---ucuuuac 301 u>ACAUGG-A UAACCGUGG( -U-AAUU)CU AUGGC-UAA- UACAUG---- ----(----) 361 ---------- -------(-- --)--|---- -- -ggaucauuc -aa|guuucu ga|--CCU-A UCA--GCUUU C-GACGGUA- 1141 CU(-GUAUUG G)ACU-ACCG U-|GGCAG-U GAC|GGGU-A A-CGGG|GAA -U-(UAGG-) 1201 GUU-CGAUU- CCG|GAGAGG G-AGCC(U-G AGAAAC)GGC UACC-ACAUC (UAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GC- AAAUU-ACCC -AAUCCU-G( ---auu--)C 1321 AGGG-A-GGU -|A|GUGACA AGAA-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AA CAACACUGG- -AAAU(---- ---uuc-)AU UU-CU-AGUG A-UUGGAAU- 1501 ------GAUA ----GGAAUC -CAAA--CCC C-----UU-U C-AGA-GUAC U---->AAUU 1561 GGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCCAA 1621 U-AGCGUA|U AUUAA--AGU UGUUG-CAG| UUA--AAAAG CUCGUAGUUG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 gauuuc-ugc u-ggaa-gca gccagu--cc gc-ccucagg ggugug-cac ---------- 1801 ---------- -----uu-g- gugaau-ucu -agcauccuu cuggau-uuc uu-------- 1861 cacacuucau u-guguggag uuuuuuccag gac------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- --UUUUACUU UG-AGAA--A 2461 AUUAGAGUGU UU-CA-AG-C AGGCuu---- ---------- ---------- ---------- 2521 -------GUC GCCU-U--GA AUACUG-CAG CAUGGAA|UA -AUAAGA-UA -GGAUuUCGG 2581 cc-------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ---C|-UAUU 2821 -UU-GUUGGU -UU-CU---- --ag----ga CUG-AA-GUA A--UGAUUAA UA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- --GGA|CGGU ---------- 3001 --UGGGGCCA GU|-UCGUAU UUAACUG-UC -AGAG(GU-G AAA---)UUC U-UAGA-U-U 3061 UGUUA-AAG- A-CGAACU-A CUGC(-GAAA )--GC|A--- UUUGCC-AA| AG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUG ---UUUUCAU -UAA-U|CA- A-GAACGAAA 3301 GUUAGGGGC- UCGAAGACG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CGUAG|UCU UA--ACC-AU AAACUAUGCC GAC|UA|--- 3421 --gagau-ag gaa-a-acgu ca--(----- ugcu-----) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ----ugac-u u-cu-ccu-g ca-ccuu--- ---------- ----AUGA(- 3661 GAAA-)UCA- -AAGUC-UUU GGGU|-U|C- UGGGGGGAGU AU--GG-UC( --GCAA-)GG 3721 CUG-AAACUU -AAAG--GAA -UUG|AC-GG -AA-GGGCA- -CCAC-CAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --C-GU|-GG 4021 AGCCUGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--GAA ACUCACCAGG UC[cag-aca 4081 uagg-aagga uu-----gac aga(uugaua g-c)------ ucuuu----- cuu-gauu-c 4141 uauggg---- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU-G-CAUG |GCC|GU-UC UUA|GUUGG- U|GGA(-GUG 4261 A-)UUUGUC- -UGG(UU-AA UU)CCGUUA- AC-GAACGAG ACCUU-AA|- ---------- 4321 ---------- ---[CCU-GC UAAAUAG-ga u--caggaac (uucgu)--- ---------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- ---------- -guucuug-- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ----uauca- CU-------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------U CUUAGAGG]- --|------- ---------- GACU-UUG-C -G-U(----- 5041 --gucua-)A CGCA-A-GGA AGUU-UGAGG CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UG A|UGCC|CUU 5221 A-G-A-UGUU CUGG-GCUGC A-CGCGCGCU ACACU--G-A UGCAU----- ---------- 5281 ---(------ ----)[ccaa cgaguuu--- ---------- -----a---- ---------- 5341 ---------- ---------( -----)---- ---------- ---------- ---------- 5401 -uaaccu-ug gcc(gaua-) ggucu----a gguaau-cuu gugagu]--- ---------- 5461 -------AUG CAU-C-G--- UGAU-G-GGG AUAGAUUAU( UGCAAUUA)U UAAUCUUC-A 5521 ACGAGG-AAU G--CCUAGUA GG-CGC-AAG (-UCAGCAG- )CUUGC-G-C -CGAUUACG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUCC-U-A CC-GAU--UG AG-UGUUCC- 5641 ggu-gaau-- uau-ucgga- ccgu-uuug- uggc-gcg-- ---------- ---------- 5701 -------(uu cg----)--- ---------- ---------- ---------- -----ugc-- 5761 c-cgaa-aug -ggaa-|guu -uugugaacc uu-AAC-A-C UUAG-AGGAA GG-AGAA-G- 5821 UCGUAACAnn nn-------- -----n-n-n nnnnnn(nnn n)nnnnnnnn nnnnnnn... 5881 ..nnn~~~~~ ~~~~~~~~|| ||| // LOCUS N.caninu.3 5903 bp RNA RNA 11-JAN-191 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: U16159 LOCUS NCU16159 2271 bp DNA INV 01-NOV-1994 DEFINITION Neospora caninum N.C.-Liverpool 18S rRNA gene, complete sequence, internal transcribed spacer 1, and 5.8S rRNA gene, partial sequence. ACCESSION U16159 KEYWORDS . SOURCE Neospora caninum. ORGANISM Neospora caninum Eukaryotae; Hyperchondria; Eukaryote crown group; Alveolates; Apicomplexans; Coccidia; Eimeriida; Sarcocystidae; Neospora. REFERENCE 1 (bases 1 to 2271) AUTHORS Barber,J.S., Holmdahl,J.O.M., Owen,M.R., Guy,F.M. and Trees,A.J. TITLE Characterisation of a canine European isolate of Neospora caninum JOURNAL Unpublished STANDARD full automatic REFERENCE 2 (bases 1 to 2271) AUTHORS Holmdahl,J.O.M. TITLE Direct Submission JOURNAL Submitted (20-OCT-1994) Joakim O. M. Holmdahl, Parasitology, Swedish University of Agricultural Sciences, Uppsala, S-750 07, Sweden STANDARD full automatic COMMENT NCBI gi: 562132 FEATURES Location/Qualifiers source 1..2271 /strain="N.C.-Liverpool" /organism="Neospora caninum" /specific_host="Canis familiaris" /dev_stage="tachyzoite" rRNA 1..1793 /product="18S ribosomal RNA" misc_RNA 1794..2213 /standard_name="ITS1" /product="internal transcribed spacer 1" rRNA 2214..>2271 /product="5.8S ribosomal RNA" BASE COUNT 592 a 459 c 551 g 658 t 11 others ORIGIN BASE COUNT 468 a 358 c 460 g 507 t 4110 others ORIGIN 1 |~~~~~~~~~ ~~~~~-ACCU GGU(UGA)UC CU|GCCAGU- A-GUCA-UAU --GCUUGUCU 61 UAAA|-GAUU AA-GCCAUGC A-UGUCU-AA GU|------- |-------(- ---)[----- 121 ---------- --------au aagcuu--uu ---------- -auac-ggc- uaa]------ 181 -----|---A CU|G-CGAA- UGGCU-CAUU AAAA-cagu- uau-aguu-- ----uauuug 241 augg<----- ---------- ---------- ---------- ---------- ---ucuuuac 301 u>ACAUGG-A UAACCGUGG( -U-AAUU)CU AUGGC-UAA- UACAUG---- ----(----) 361 ---------- -------(-- --)--|---- -- -ggaucauuc -aa|guuucu ga|--CCU-A UCA--GCUUU C-GACGGUA- 1141 CU(-GUAUUG G)ACU-ACCG U-|GGCAG-U GAC|GGGU-A A-CGGG|GAA -U-(UAGG-) 1201 GUU-CGAUU- CCG|GAGAGG G-AGCC(U-G AGAAAC)GGC UACC-ACAUC (UAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GC- AAAUU-ACCC -AAUCCU-G( ---auu--)C 1321 AGGG-A-GGU -|A|GUGACA AGAA-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AA CAACACUGG- -AAAU(---- ---uuc-)AU UU-CU-AGUG A-UUGGAAU- 1501 ------GAUA ----GGAAUC -CAAA--CCC C-----UU-U C-AGA-GUAA C---->AAUU 1561 GGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCCAA 1621 U-AGCGUA|U AUUAA--AGU UGUUG-CAG| UUA--AAAAG CUCGUAGUUG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 gauuuc-ugc u-ggaa-gca gccagu--cc gc-ccucagg ggugug-cac uuggugaauu 1801 cu-------- -----ag--c a------ucc uucu------ ---------- ---------- 1861 -ggau-uu-- --cuucacac uucauugugu ggaguuuuuu ccaggac--- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- --uuuuacuu ug-agaa--A 2461 AUUAGAGUGU UU-CA-AG-C AGGCuu---- ---------- ---------- ---------- 2521 -------GUC GCCU-U--GA AUACUG-CAG CAUGGAA|UA -AUAAGA-UA -GGAUuUCGG 2581 cc-------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ---c|-UAUU 2821 -UU-GUUGGU -UU-CU---- --ag----ga CUG-AA-GUA A--UGAUUAA UA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGA|CGGU ---------- 3001 --UGGGGGCA UU|--CGUAU UUAACUG-UC -AGAG(GU-G AAA---)UUC U-UAGA-U-U 3061 UGUUA-AAG- A-CGAACU-A CUGC(-GAAA )--GC|A--- UUUGCC-AA| AG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUG ---UUUUCAU -UAA-U|CA- A-GAACGAAA 3301 GUUAGGGGC- UCGAAGACG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CGUAG|UCU UA--ACC-AU AAACUAUGCC GAC|UA|--- 3421 --gagau-ag gaa-a-acgu ca--(----- ugcu-----) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ----ugac-u u-cu-ccu-g ca-ccuu--- ---------- ----AUGA(- 3661 GAAA-)UCA- -AAGUC-UUU GGGU|-U|C- UGGGGGGAGU AU--GG-UC( --GCAA-)GG 3721 CUG-AAACUU -AAAG--GAA -UUG|AC-GG -AA-GGGCA- -CCAC-CAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --C-GU|-GG 4021 AGCCUGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--GAA ACUCACCAGG UC[cag-aca 4081 uagg-aagga uu-----gac aga(uugaua g-c)------ ucuuu----- cuu-gauu-c 4141 uauggg---- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU-G-CAUG |GCC|GU-UC UUA|GUUGG- U|GGA(-GUG 4261 A-)UUUGUC- -UGG(UU-AA UU)CCGUUA- AC-GAACGAG ACCUU-AA|- ---------- 4321 ---------- ---[CCU-GC UAAAUag-ga u--caggaac (uucgu)--- ---------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- ---------- -guucuug-- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ----uauca- cu-------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------U CUUAGAGG]- --|------- ---------- GACU-UUG-C -G-U(----- 5041 --gucua-)A CGCA-A-GGA AGUU-UGAGG CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UG A|UGCC|CUU 5221 A-G-A-UGUU CUGG-GCUGC A-CGCGCGCU ACACU--G-A UGCAU----- ---------- 5281 ---(------ ----)[ccaa cgaguuu--- ---------- -----a---- ---------- 5341 ---------- ---------( -----)---- ---------- ---------- ---------- 5401 -uaaccu-ug gcc(gaua-) ggucu----a gguaau-cuu gugagu]--- ---------- 5461 -------AUG CAU-C-G--- UGAU-G-GGG AUAGAUUAU( UGCAAUUA)U UAAUCUUC-A 5521 ACGAGG-AAU G--CCUAGUA GG-CGC-AAG (-UCAGCAG- )CUUGC-G-C -CGAUUACG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUCC-U-A CC-GAU--UG AG-UGUUCC- 5641 ggu-gaau-- uau-ucgga- ccgu-uuug- uggc-gcg-- ---------- ---------- 5701 -------(uu cg----)--- ---------- ---------- ---------- -----ugc-- 5761 c-cgaa-aug -ggaa-|guu -uugugaacc uu-AAC-A-C UUAG-AGGAA GG-AGAA-G- 5821 UCGUAACAAG GU-------- -----U-U-C CGUAGG(UGA A)CCUGCGGA AGGAUCA--- 5881 --UUC----- -------~|| ||| // LOCUS S.arietica 5903 bp RNA RNA 11-JAN-191 DEFINITION Sarcocystis arieticanis. ACCESSION No information KEYWORDS No information. SOURCE Sarcocystis arieticanis. ORGANISM Sarcocystis arieticanis. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: L24382 ID SARG18SY standard; DNA; INV; 1821 BP. XX AC L24382; XX DT 29-JAN-1994 (Rel. 38, Created) DT 29-JAN-1994 (Rel. 38, Last updated, Version 1) XX DE Sarcocystis arieticanis 18S ribosomal RNA (18S rRNA) gene. XX KW 18S ribosomal RNA. XX OS Sarcocystis arieticanis OC Eukaryota; Animalia; Protozoa; Apicomplexa; Perkinsiea; Coccidia; OC Eucoccidiidae; Eimeriina; Sarcocystidae. XX RN [1] RP 1-1821 RA Ellis J.T., Luton K., Baverstock P.B., Tenter A.M., Johnson A.M.; RT "Phylogenetic relationships of Sarcocystis species determined from RT PCR derived complete ribosomal RNA gene sequences"; RL Unpublished. XX FH Key Location/Qualifiers FH FT rRNA 1..1821 FT /product="18S ribosomal RNA" FT /gene="18S rRNA" FT source 1..1821 FT /organism="Sarcocystis arieticanis" FT /dev_stage="tachyzoite" FT /sequenced_mol="DNA" XX SQ Sequence 1821 BP; 494 A; 347 C; 460 G; 518 T; 2 other; BASE COUNT 494 a 347 c 460 g 518 t 4084 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~(~~~)~~ ~~|~~~~~~~ ~~~~~~~~~~ ~~~~UUGUCU 61 UAAA|-GAUU AA-GCCAUGC A-UGUCU-AA GU|------- |--------- ----[----- 121 ---------- --------au aagcuucuuu ---------- -auac-ggc- gaa]------ 181 -----|---A CU|G-CGAA- UGGCU-CAUU AAAA-cagu- uau-aguu-- ----uauuug 241 auag<----- ---------- ---------- --------uc auaucgagau gagaaucuac 301 u>ACAUGG-A UAACCGUGG( -U-AAUU)CU AUGGC-UAA- UACAUG---- ---------- 361 ---------- ---------- ---------- -- -agaucauuc -aa|guuucu ga|--CCUGA UCA--GCUUU C-GACGGUA- 1141 GU(-GUAUUG G)ACU-ACCG U-|GGCAG-U GAC|GGGU-A A-CGGG|GAA -U-(UAGG-) 1201 GUU-CGAUU- CCG|GAGAGG G-AGCC(U-G AGAAAC)GGC UACC-ACAUC (UAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GC- AAAUU-ACCC -AAUCCU-G( ---acu--)C 1321 AGGG-A-GGU -|A|GUGACA AGAA-AU--- ---------- ---------- ---------- 1381 -----|---- ---------- ---------- ---------- ---------- ---------- 1441 --------AA CAACACUGG- -AAAU(---- ---uuu-)AU UU-CU-AGUG A-UUGGAAU- 1501 ------GAUG ----GGAAUU -UAAA--CCC C-----UU-U C-AGA-GUAA C---->AAUU 1561 GGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCCAA 1621 U-AGCGUA|U AUUAA--AGU UGUUG-CAG| UUA--AAAAG CUCGUAGUUG |--------- 1681 ---------- ---------- ---------- ---------- ---------- -|-------< 1741 gaugucugcu g--------- ---------g aa-------- ---------- ---------- 1801 ---------- -----gc-a- a--------- -----ucggu c----c-gcc cu-------- 1861 auuuguaggg u-gugcacuu gaugaau--- ------ucug gcaucucuau ccuga----- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ------uaau ggugugcgcg uggggaauuc uccucuuccc gcgggcgauc aguuuucggg 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- --------a- uac------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- --UGUUACUU UG-AGAA--A 2461 AUUAGAGUGU UU-GA-AG-C AGGCuaauu- ---------- ---------- ---------- 2521 ---------- GCCU-U--GA AUACUG-CAG CAUGGAA|UA -ACAAUA-UA -GGAUuUCGG 2581 uu-------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- --cu|--auu 2821 -uu-guuggc -uu-ucuag- --------ga CUG-AA-AUA A--UGAUUAA UA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGA|CAGU ---------- 3001 --UGGGGGCA UU|--CGUAU UUAACUG-UC -AGAG(GU-G AAA---)UUC U-UAGA-U-U 3061 UGUUA-AAG- A-CGAACU-A CUGC(-GAAA )--GC|A--- UUUGCC-AA| AG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUG ---UUUUCAU -UAA-U|CA- A-GAACGAAA 3301 GUUAGGGGC- UCGAAGACG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CGUAG|UCU UA--ACC-AU AAACUAUGCC GAC|UA|--- 3421 --Gagau-ag gaa-a-augu ca--(----u uuugc----) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ----ugac-u u-cu-ccu-g ca-cCuu--- ---------- ----auGA(- 3661 GAAA-)UCA- -AAGUC-uuu gGGU|-U|C- UGGGGGGAGU AU--GG-UC( --GCAA-)GG 3721 CUG-AAACUU -AAAG--GAA CUUG|AC-GG -AA-GGGCA- -CCAC-CA-c ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --n-Gn|-GG 4021 AGCCUGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG---AA ACUCACCAGG UC[cag-aca 4081 uggg-aagga uu-----gac aga(uugaua g-c)------ ucuuu----- cuu-gauu-c 4141 uauggg---- -]-------- |--------- ---------- ---------- ---------- 4201 ---------- ---|UG-GU- GGU-G-CAUG |GCC|GU-UC UUA|GUUGG- U|GGA(-GUG 4261 A-)UUUGUC- -UGG(UU-AA UU)CCGUUA- AC-GAACGAG ACCUU-AA|- ---------- 4321 ---------- ---[CCU-GC UAAAUAGg-- a--uc----- -aggaaca-- -cuu-uauug 4381 ugu--u---- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- ---------- --ucugu--- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- -----auca- CU-------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------U CUUAGAGG]- --|------- ---------- GACU-UUG-C -G-U(----- 5041 --gucua-)A CGCA-A-GGA AGUU-UGAGG CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UG A|UGCC|CUU 5221 A-G-A-UGUU CUGG-GCUGC A-CGCGCGCU ACACU--G-A UGCAU----- ---------- 5281 ---------- -----[ccaa caaguug--- ---------- ---------- ---------- 5341 ---------- ---------- ---------- ---------- ---------- -------uug 5401 aaaaccu-ug gcc(gaua-) gguuu----a gguaaucuuu -ugagu]--- ---------- 5461 -------AUG CAU-C-G--- UGAU-G-GGG AUAGAUUAU( UGCAAUUA)U UAAUCUUC-A 5521 ACGAGG-AAU G--CCUAGUA GG-CGC-AAG (-UCAGCAG- )CUUGC-G-C -CGAUUACG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUCC-U-A CC-GAU--UG AG-UGUUcc- 5641 ggu-gaau-- uau-ucgga- ccgu-cccgu cuac-gcg-- ---------- ---------- 5701 -------(cc guuu--)--- ---------- ---------- --------ca ggcg-ugu-- 5761 g-cggg-aug -gaaa-|guu -uugugaacc uu-AAC-A-C UUAG-AGGAA G--AGAA-G~ 5821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~)~~~~~~~~ ~~~~~~~~~~ 5881 ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS S.fusiform 5903 bp RNA RNA 11-JAN-191 DEFINITION Sarcocystis fusiformis. ACCESSION No information KEYWORDS No information. SOURCE Sarcocystis fusiformis. ORGANISM Sarcocystis fusiformis. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: U03071 LOCUS SFU03071 1878 bp DNA INV 04-NOV-1993 DEFINITION Sarcocystis fusiformis 18S rRNA. ACCESSION U03071 KEYWORDS . SOURCE Sarcocystis fusiformis ORGANISM Sarcocystis fusiformis Eucaryotae; Protozoa; Apicomplexa; Sporozoa; Coccidia; Eucoccidiida; Eimeriina; Sarcocystidae; Sarcocystis. REFERENCE 1 (bases 1 to 1878) AUTHORS Holmdahl,J.O., Mattsson,J.G., Uggla,A. and Johansson,K. TITLE The phylogeny of Neospora caninum and Toxoplasma gondii based on 18S rRNA sequences JOURNAL Unpublished STANDARD full automatic REFERENCE 2 (bases 1 to 1878) AUTHORS Holmdahl,J.O. TITLE Direct Submission JOURNAL Submitted (02-NOV-1993) Joakim O.M. Holmdahl, Department of Veterinary Microbiology, Section of Parasitology, Uppsala S-750 07, Sweden STANDARD full automatic FEATURES Location/Qualifiers rRNA 1..1811 /product="18S rRNA" source 1..1878 /organism="Sarcocystis fusiformis" /specific_host="Felis catus" /dev_stage="cystozoite" BASE COUNT 537 a 337 c 459 g 545 t ORIGIN BASE COUNT 537 a 337 c 459 g 545 t 4025 others ORIGIN 1 |~~~~~~~~~ ~~~~~~ACCU GGU(UGA)UC CU|GCCAGU- A-GUCA-UAU --GCUUGUCU 61 UAAA|-GAUU AA-GCCAUGC A-UGUCU-AA GU|------- |--------- ----[----- 121 ---------- --------au aagcuuuuau ------u--- -auac-ggc- gaa]------ 181 -----|---A CU|G-CGAA- UGGCU-CAUU AAAA-cagu- uau-aguu-- ----uauuug 241 auag<----- ---------- ---------- ---------- --------uc aauauaauac 301 u>ACAUGG-A UAACCGUGG( -U-AAUU)CU AUGGC-UAA- UACAUG---- ---------- 361 ---------- ---------- ---------- -- -agaucauuc -aa|guuucu ga|--CCU-A UCA--GCUUU C-GACGGUA- 1141 GU(-GUAUUG G)ACU-ACCG U-|GGCAG-U GAC|GGGU-A A-CGGG|GAA -U-(UAGG-) 1201 GUU-CGAUU- CCG|GAGAGG G-AGCC(U-G AGAAAC)GGC UACC-ACAUC (UAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GC- AAAUU-ACCC -AAUCCU-G( ---acu--)C 1321 AGGG-A-GGU -|A|GUGACA AGAA-AU--- ---------- ---------- ---------- 1381 -----|---- ---------- ---------- ---------- ---------- ---------- 1441 --------AA CAACACUGG- -AAAu(---- ---ucu-)AU UU-CU-AGUG A-UUGGAAU- 1501 ------GAUG ----GGAAUC -CAAA--CCC C-----UU-U C-AGA-GUAA C---->AAUU 1561 GGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCCAA 1621 U-AGCGUA|U AUUAA--AGU UGUUG-CAG| UUA--AAAAG CUCGUAGUUG |--------- 1681 ---------- ---------- ---------- ---------- ---------- -|-------< 1741 gauauc-ugc u-ggaa-gca aucagu--cc gc-ccuuuua -gugag-ggu ---------- 1801 ---------- -----gu-g- uacuug-aug -aauucuggc augauu-auc uu-------- 1861 cccacuaaua a-uauuauua uauuaggaua auuccuaaua ugguaauaau aauuu----- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ------uggu aagacaaaca gu-------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- --AGUUACUU UG-AGAA--A 2461 AUUACAGUGU UU-GA-AG-C AGGCuu---- ---------- ---------- ---------- 2521 -------guu GCCU-U--GA AUACUG-CAG CAUGGAA|UA -ACAAUA-UA -GGAUuUCGG 2581 uu-------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- --cu|--auu 2821 -uu-guuggu -uu-cuag-- --------ga CUG-AA-AUA A--UGAUUAA UA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGA|CAGU ---------- 3001 --UGGGGGCA UU|--CGUAU UUAACUG-UC -AGAG(GU-G AAA---)UUC U-UAGA-U-U 3061 UGUUA-AAG- A-CGAACU-A CUGC(-GAAA )--GC|A--- UUUGCC-AA| AG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUG ---UUUUCAU -UAA-U|CA- A-GAACGAAA 3301 GUUAGGGGC- UCGAAGACG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CGUAG|UCU UA--ACC-AU AAACUAUGCC GAC|UA|--- 3421 --Gagau-ag gaa-a-augu ca--(----- cugu-----) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ----ugac-u u-cu-ccu-g ca-cCuu--- ---------- ----auGA(- 3661 GAAA-)UCA- -AAGUC-uuu gGGU|-U|C- UGGGGGGAGU AU--GG-UC( --GCAA-)GG 3721 CUG-AAACUU -AAAG--GAA -UUG|AC-GG -AA-GGGCA- -CCAC-CAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --C-GU|-GG 4021 AGCCUGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--GAA ACUCACCAGG UC[cag-aca 4081 uggg-aagga uu-----gac aga(uugaua g-c)------ ucuuu----- cuu-gauu-c 4141 uauggg---- -]-------- |--------- ---------- ---------- ---------- 4201 ---------- ---|UG-GU- GGU-G-CAUG |GCC|GU-UC UUA|GUUGG- U|GGA(-GUG 4261 A-)UUUGUC- -UGG(UU-AA UU)CCGUUA- AC-GAACGAG ACCUU-AA|- ---------- 4321 ---------- ---[CCU-GC UAAAUAG-ga u--caagaac -------ac( uuuu-auuau 4381 )gu------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- ---------- -guuuuug-- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ----uauca- CU-------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------U CUUAGAGG]- --|------- ---------- GACU-UUG-c -g-u(----- 5041 --gucua-)A CGCA-A-GGA AGUU-UGAGG CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UG A|UGCC|CUU 5221 A-G-A-UGUU CUGG-GCUGC A-CGCGCGCU ACACU--G-A UGCAU----- ---------- 5281 ---------- -----[ccaa caaguug--- ---------- ---------- ---------- 5341 ---------- ---------- ---------- ---------- ---------- -------uuu 5401 aagaccu-ug gcc(gaua-) gguuu----a gguaaucuuu -ugagu]--- ---------- 5461 -------AUG CAU-C-G--- UGAU-G-GGG AUAGAUUAU( UGCAAUUA)U UAAUCUUC-A 5521 ACGAGG-AAU G--CCUAGUA GG-CGC-AAG (-UCAGCAC- )CUUGC-G-C -CGAUUACG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUCC-U-A CC-GAU--UG AG-UGUUcc- 5641 ggu-gaau-- uau-ucgga- cugu-uccg- uguc-acguu gu-gu----- ---------- 5701 -------(ac ac--a-)--- ---------- ---------- -------gca augg-ugu-- 5761 g-cgga-aug -gaaa-|guu -uugugaacc uu-AAC-A-C UUAG-AGGAA GG-AGAA-G- 5821 UCGUAACAAG GU-------- -----U-U-C CGUAGG(UGA A)CCUGCAGA AGGAUCA~~~ 5881 ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS S.gigantea 5903 bp RNA RNA 11-JAN-191 DEFINITION Sarcocystis gigantea. ACCESSION No information KEYWORDS No information. SOURCE Sarcocystis gigantea. ORGANISM Sarcocystis gigantea. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: L24384 LOCUS S.gigantea 1830 bp ds-DNA INV 03-JAN-1994 DEFINITION Sarcocystis gigantea 18S ribosomal RNA (18S rRNA) gene. ACCESSION L24384 KEYWORDS 18S ribosomal RNA. SOURCE Sarcocystis gigantea tachyzoite DNA. ORGANISM Sarcocystis gigantea Eukaryota; Animalia; Protozoa; Apicomplexa; Sporozoasida; Coccidiasina; Eucocciodiorida; Eimeriorina; Sarcocystidae. REFERENCE 1 (bases 1 to 1830) AUTHORS Ellis,J.T., Luton,K., Baverstock,P.B., Tenter,A.M. and Johnson,A.M. TITLE Phylogenetic relationships pf Sarcocystis species determined from PCR derived complete ribosomal RNA gene sequences JOURNAL Unpublished (1993) STANDARD full automatic FEATURES Location/Qualifiers rRNA 1..1830 /product="18S ribosomal RNA" /gene="18S rRNA" source 1..1830 /organism="Sarcocystis gigantea" /dev_stage="tachyzoite" /sequenced_mol="DNA" BASE COUNT 507 a 323 c 449 g 550 t 1 others ORIGIN BASE COUNT 507 a 323 c 449 g 550 t 4074 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~(~~~)~~ ~~|~~~~~~~ ~~~~~~~~-U --GCUUGUCU 61 UAAA|-GAUU AA-GCCAUGC A-UGUCU-AA GU|------- |--------- ----[----- 121 ---------- --------au aagcuuuu-- ---------- -auac-ggc- gaa]------ 181 -----|---A CU|G-CGAA- UGGCU-CAUU AAAA-cagu- uau-aguu-- ----uauuug 241 auag<----- ---------- ---------- ---------- ---------u cgauuuuuac 301 u>ACAUGG-A UAACCGUGG( -U-AAUU)CU AUGGC-UAA- UACAUG---- ---------- 361 ---------- ---------- ---------- -- -agaucauuc -aa|guuucu ga|--CCU-A UCA--GCUUU C-GACGGUA- 1141 GU(-GUAUUG G)ACU-ACCG U-|GGCAG-U GAC|GGGU-A A-CGGG|GAA -U-(UAGG-) 1201 GUU-CGAUU- CCG|GAGAGG G-AGCC(U-G AGAAAC)GGC UACC-ACAUC (UAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GC- AAAUU-ACCC -AAUCCU-G( ---acu--)C 1321 AGGG-A-GGU -|A|GUGACA AGAA-AU--- ---------- ---------- ---------- 1381 -----|---- ---------- ---------- ---------- ---------- ---------- 1441 --------AA CAACACUGG- -AAAU(---- ---ugu-)AU UU-CU-AGUG A-UUGGAAU- 1501 ------GAUG ----GGAAUC -CAAA--CCC C-----UU-U C-AGA-GUAA C---->AAUU 1561 GGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCCAA 1621 U-AGCGUA|U AUUAA--AGU UGUUG-CAG| UUA--AAAAG CUCGUAGUUG |--------- 1681 ---------- ---------- ---------- ---------- ---------- -|-------< 1741 gauaucugcu g-gaagcaau caguccgccc uuuucguaag ggugug-cac uugaugaauu 1801 cu-gg---ca ug-auuu-ca uccuaauaau aauauauuau uauauuaggu uguucuagua 1861 uaauaauauu u-auuauuau gggaugac-- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- --AGUUAC-U UG-AGAA--- 2461 --UAGAGUG- UU-GA-AG-C AGGCuuuguu ---------- ---------- ---------- 2521 ---------- GCCU-U--GA AU-CUG-CAG CAUGGAA|UA -ACAAUA-UA -GGAUuUCGG 2581 uucua----- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- --uu|--auu 2821 -uu-guuggu -uu-uuucug ua------ga CUG-AA-AUA A--UGAUUAA UA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGA|CAGU ---------- 3001 --UGGGGGCA UU|--CGUAU UUAACUG-UC -AGAG(GU-G AAA---)UUC U-UAGA-U-U 3061 UGUUA-AAG- A-CGAACU-A CUGC(-GAAA )--GC|A--- UUUGCC-AA| AG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUG ---UUUUCAU -UAA-U|CA- A-GAACGAAA 3301 GUUAGGGGC- UCGAAGACG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CGUAG|UCU UA--ACC-AU AAACUAUGCC GAC|UA|--- 3421 --Gagau-ag gaa-a-augu ca--(----c auugu----) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ----ugac-u u-cu-ccu-g ca-cCuu--- ---------- ----auGA(- 3661 GAAA-)UCA- -AAGUC-uuu gGGU|-U|C- UGGGGGGAGU AU--GG-UC( --GCAA-)GG 3721 CUG-AAACUU -AAAG--GAA -UUG|AC-GG -AA-GGGCA- -CCAC-CAGU ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --C-GU|-GG 4021 AGCCUGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--GAA ACUCACCAGG UC[cag-aca 4081 uggg-aagga uu-----gac aga(uugaua g-c)------ ucuuu----- cuu-gauu-c 4141 uauggg---- -]-------- |--------- ---------- ---------- ---------- 4201 ---------- ---|UG-GU- GGU-G-CAUG |GCC|GU-UC UUA|GUUGG- U|GGA(-GUG 4261 A-)UUUGUC- -UGG(UU-AA UU)CCGUUA- AC-GAACGAG ACCUU-AA|- ---------- 4321 ---------- ---[CCU-GC UAAAUAGg-- a--uc----- -aggaa---- -cac-aauuu 4381 uuu--guguu u---uu---- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- ---------- -gu------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- -----auca- CU-------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------U CUUAGAGG]- --|------- ---------- GACU-UUG-C -G-U(----- 5041 --gucua-)A CGnA---GGA AGUU-UGAGG CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UG A|UGCC|CUU 5221 A-G-A-UGUU CUGG-GCUGC A-CGCGCGCU ACACU--G-A U-CAU----- ---------- 5281 ---------- -----[ccaa caaguug--- ---------- ---------- ---------- 5341 ---------- ---------- ---------- ---------- ---------- ----uauuau 5401 aagaccu-ug gcc(gaua-) gguuu----a gguaaucuuu -ugagu]--- ---------- 5461 -------AUG CAU-C-G--- UGAU-G-GGG AUAGAUUAU( UGCAAUUA)U UAAUCUUC-A 5521 ACGAGG-AAU G--CCUAGUA GG-CGC-AAG (-UCAGCAG- )CUUGC-G-C -CGAUUACG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUCC-U-A CC-GAU--UG AG-UGUUcc- 5641 ggu-gaau-- uau-ucgga- cugu-uccg- uguc-gcg-- ---------- ---------- 5701 ---guuc(cu uuuu--)ggg c--------- ---------- ---------- --cg-ugu-- 5761 a-cgga-aug -ggaa-|guu -uugugaacc uu-AAC-A-C UUAG-AGGAA G--AGAA~~~ 5821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5881 ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS S.muris 5903 bp RNA RNA 11-JAN-191 DEFINITION Sarcocystis muris. ACCESSION No information KEYWORDS No information. SOURCE Sarcocystis muris. ORGANISM Sarcocystis muris. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: M64244 M34846 LOCUS SARRR16S 1809 bp ds-DNA INV 18-APR-1991 DEFINITION Sarcocystis muris 16S-like ribosomal RNA (16S rRNA) gene sequence. ACCESSION M64244 M34846 KEYWORDS 16S-like ribosomal RNA; small subunit ribosomal RNA. SOURCE Sarcocystis muris DNA. ORGANISM Sarcocystis muris Eukaryota; Animalia; Protozoa; Apicomplexa; Perkinsea; Coccidia; Eucoccidiidae; Eimeriina; Sarcocystidae. REFERENCE 1 (bases 1 to 1809) AUTHORS Gajadhar,A.A., Marquardt,W.C., Hall,R., Gunderson,J., Ariztia-Carmona,E.V. and Sogin,M.L. TITLE Ribosomal RNA sequences of Sarcocystis muris, Theileria annulata and Crypthecodinium cohnii reveal evolutionary relationships among apicomplexans, dinoflagellates, and ciliates JOURNAL Mol. Biochem. Parasitol. 45, 147-154 (1991) STANDARD simple staff_entry FEATURES Location/Qualifiers rRNA 1..1809 /product="16S-like ribosomal RNA" /gene="16S rRNA" BASE COUNT 480 a 362 c 469 g 497 t 1 others ORIGIN BASE COUNT 480 a 362 c 469 g 497 t 4095 others ORIGIN 1 |~~~~~~~~~ ~~~~~AACCU GGU(UGA)UC CU|GCCAGU- A-GUCA-UAU --GCUUGUCU 61 UAAA|-GAUU AA-GCCAUGC A-UGUCU-AA GU|------- |--------- ----[----- 121 ---------- --------au aagcuuuu-- ---------- -auac-ggc- gaa]------ 181 -----|---A CU|G-CGAA- UGGCU-CAUU AAAA-cagu- uau-aguu-- ----uauuug 241 augg<----- ---------- ---------- ---------- ---------- ---ucauuac 301 u>ACAUGG-A UAACCGUGG( -U-AAUU)CU AUGGC-UAA- UACAUG---- ---------- 361 ---------- ---------- ---------- -- -agaucauuc -aa|guuucu ga|--CCU-A UCA--GCUUU C-GACGGUA- 1141 CU(-GUAUUG G)ACU-ACCG U-|GGCAG-U GAC|GGGU-A A-CGGG|GAA -U-(UAGG-) 1201 GUU-CGAUU- CCG|GAGAGG G-AGCC(U-G AGAAAC)GGC UACC-ACAUC (UAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GC- AAAUU-ACCC -AAUCCU-G( ---acu--)C 1321 AGGG-A-GGU -|A|GUGACA AGAA-AU--- ---------- ---------- ---------- 1381 -----|---- ---------- ---------- ---------- ---------- ---------- 1441 --------AA CAACACUGG- -AAAU(---- ---uca-)AU UU-CU-AGUG A-UUGGAAU- 1501 ------GAUG ----GGAAUC -CAAA--CCC C-----UU-U C-AGA-GUAA C---->AAUU 1561 GGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCyAA 1621 U-AGCGUA|U AUUAA--AGU UGUUG-CAG| UUA--AAAAG CUCGUAGUUG |--------- 1681 ---------- ---------- ---------- ---------- ---------- -|-------< 1741 gauaucugcc g-gaag-cag ccaguc--c- gc-ccuuccg gggugu-gca ---------- 1801 ---------- ------c-u- ugguga-a-- -uucuggcau ccuccu-gau ug-------- 1861 gugccgucac a-cuucauug ugaugauggc agcuaucagg gc-------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- --CGUUACUU UG-AGAA--A 2461 AUUAGAGUGU UU-CA-AG-C AGGCuuau-- ---------- ---------- ---------- 2521 ---------u GCUU-U--GA AUACUG-CAG CAUGGAA|UA -ACAAGA-UA -GGAUuUCGG 2581 uu-------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- --cu|--auu 2821 -uu-guuggu -uu-cuag-- --------ga CUG-AA-GUA A--UGAUUAA UA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGA|CAGU ---------- 3001 --UGGGGGCA UU|--CGUAU UUAACUG-UC -AGAG(GU-G AAA---)UUC U-UAGA-U-U 3061 UGUUA-AAG- A-CGAACU-A CUGC(-GAAA )--GC|A--- UUUGCC-AA| AG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUG ---UUUUCAU -UAA-U|CA- A-GAACGAAA 3301 GUUAGGGGC- UCGAAGACG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CGUAG|UCU UA--ACC-AU AAACUAUGCC GAC|UA|--- 3421 --Gagau-ag gaa-a-aagu ca--(----- uccu-----) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ----ugac-u u-cu-ccu-g ca-cCuu--- ---------- ----auGA(- 3661 GAAA-)UCA- -AAGUC-uuu gGGU|-U|C- UGGGGGGAGU AU--GG-UC( --GCAA-)GG 3721 CUG-AAACUU -AAAG--GAA -UUG|AC-GG -AA-GGGCA- -CCAC-CAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --C-GU|-GG 4021 AGCCUGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--GAA ACUCACCAGG UC[cag-aca 4081 uggg-aagga uu-----gac aga(uugaua g-c)------ ucuuu----- cuu-gauu-c 4141 uauggg---- -]-------- |--------- ---------- ---------- ---------- 4201 ---------- ---|UG-GU- GGU-G-CAUG |GCC|GU-UC UUA|GUUGG- U|GGA(-GUG 4261 A-)UUUGUC- -UGG(UU-AA UU)CCGUUA- AC-GAACGAG ACCUU-AA|- ---------- 4321 ---------- ---[CCU-GC UAAAUAG-ga u--caggaac ---------c ucgc------ 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- ---------- -guucuug-- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ----uauca- CU-------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------U CUUAGAGG]- --|------- ---------- GACU-UUG-C -G-U(----- 5041 --gucua-)A CGCA-A-GGA AGUU-UGAGG CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UG A|UGCC|CUU 5221 A-G-A-UGUU CUGG-GCUGC A-CGCGCGCU ACACU--G-A UGCAU----- ---------- 5281 ---------- -----[ccaa cgaguuu--- ---------- ---------- ---------- 5341 ---------- ---------- ---------- ---------- ---------- ---------a 5401 ugaaccu-ug gcc(gaca-) ggucu----a gguaaucuuu -ugagu]--- ---------- 5461 -------AUG CAU-C-G--- UGAU-G-GGG AUAGAUUAU( UGCAAUUA)U UAAUCUUC-A 5521 ACGAGG-AAU G--CCUAGUA GG-CGC-AAG (-UCAGCAG- )CUUGC-G-C -CGAUUACG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUCC-U-A CC-GAU--UG AG-UGUUcc- 5641 ggu-gaau-- uau-ucgga- ccgu-uccg- uguc-gcg-- ---------- ---------- 5701 -------(uu u-----)--- ---------- ---------- ---------- --cg-ugu-- 5761 g-cgga-aug -ggaa-|guu -uugugaacc uu-AAC-A-C UUAG-AGGAA GG-AGAA-G- 5821 UCGUAACAAG GU-------- -----U-U-C CGUAGG(UGA A)CCUGCAGA AGGAUCA--- 5881 --AGC~~~~~ ~~~~~~~~|| ||| // LOCUS S.neurona 5903 bp RNA RNA 11-JAN-191 DEFINITION Sarcocystis neurona SN5. ACCESSION No information KEYWORDS No information. SOURCE Sarcocystis neurona SN5. ORGANISM Sarcocystis neurona SN5. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: U07812 LOCUS SNU07812 1803 bp DNA INV 06-JUN-1994 DEFINITION Sarcocystis neurona SN5 small ribosomal subunit gene, complete sequence. ACCESSION U07812 KEYWORDS . SOURCE Sarcocystis neurona ORGANISM Sarcocystis neurona Eucaryotae; Protozoa; Apicomplexa; Sporozoa; Coccidia; Eucoccidiida; Eimeriina; Sarcocystidae; Sarcocystis. REFERENCE 1 (sites) AUTHORS Fenger,C.K., Granstrom,D.E., Langemeier,J.L., Gajadhar,A.A., Cothran,G., Tramontin,R.R., Dubey,J.P. and Stamper,S. TITLE Phylogenetic relationship of Sarcocystis neurona to other members of the family Sarcocystidae based on the sequence of the small ribosomal subunit gene JOURNAL Unpublished STANDARD full automatic REFERENCE 2 (bases 1 to 1803) AUTHORS Fenger,C.K. TITLE Direct Submission JOURNAL Submitted (17-MAR-1994) Clara K. Fenger, University of Kentucky, Veterinary Science, 108 Gluck Equine Research Center, Lexington, KY 40546, USA STANDARD full automatic COMMENT NCBI gi: 497212 FEATURES Location/Qualifiers source 1..1803 /lab_host="Bos taurus monocytes" /strain="SN5" /organism="Sarcocystis neurona" /macronuclear /dev_stage="cultured tachyzoites" rRNA 1..1803 /product="small ribosomal subunit" BASE COUNT 474 a 360 c 464 g 505 t ORIGIN BASE COUNT 474 a 360 c 464 g 505 t 4100 others ORIGIN 1 |~~~~~~~~~ ~~~~~AACCU GGU(UGA)UC CU|GCCAGU- A-GUCA-UAU --GCUUGUCU 61 UAAA|-GAUU AA-GCCAUGC A-UGUCU-AA GU|------- |--------- ----[----- 121 ---------- --------au aagcuuuu-- ---------- -auac-ggc- gaa]------ 181 -----|---A CU|G-CGAA- UGGCU-cAUU AAAA-cagu- uau-aguu-- ----uauuug 241 augg<----- ---------- ---------- ---------- ---------- ---ucuuuac 301 u>ACAUGG-A UAACCGUGG( -U-AAUU)CU AUGGC-UAA- UACAUG---- ---------- 361 ---------- ---------- ---------- -- -ggaucauuc -aa|guuucu ga|--CCU-A UCA--GCUUU C-GACGGUA- 1141 CU(-GUAUUG G)ACU-ACCG U-|GGCAG-U GAC|GGGU-A A-CGGG|GAA -U-(UAGG-) 1201 GUU-CGAUU- CCG|GAGAGG G-AGCC(U-G AGAAAC)GGC UACC-ACAUC (UAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GC- AAAUU-ACCC -AAUCCU-G( ---acu--)C 1321 AGGG-A-GGU -|A|GUGACA AGAA-AU--- ---------- ---------- ---------- 1381 -----|---- ---------- ---------- ---------- ---------- ---------- 1441 --------AA CAACACUGG- -AAAU(---- ---uau-)AU UU-CU-AGUG A-UUGGAAU- 1501 ------GAUG ----GGAAUC -CAAA--CCC C-----UU-U C-AGA-GUAA C---->AAUU 1561 GGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCCAA 1621 U-AGCGUA|U AUUAA--AGU UGUUG-CAG| UUA--AAAAG CUCGUAGUUG |--------- 1681 ---------- ---------- ---------- ---------- ---------- -|-------< 1741 gauaucugcu g------gaa gcagcc---- ag-uccg-cc -----c-uuu ---------- 1801 ---------- ---------- -guggg-ug- -ugca-cuu- -ggu---gaa u--------- 1861 ---------- ---------- ---------- ------ucug gcauccuccu gauug----- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ------gugu uaucaucacu ucauuguguu gauggcagcu gucaggac-- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- --CGUUACUU UG-AGAA--A 2461 AUUAGAGUGU UU-CA-AG-C AGGCuuguu- ---------- ---------- ---------- 2521 ---------- GCCU-U--GA AUACUG-CAG CAUGGAA|UA -ACAAGA-UA -GGAUuUCGG 2581 uu-------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- --cu|--auu 2821 -uu-guuggu -uu-cuag-- --------ga CUG-AA-GUA A--UGAUUAA UA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGA|CAGU ---------- 3001 --UGGGGGCA UU|--CGUAU UUAACUG-UC -AGAG(GU-G AAA---)UUC U-UAGA-U-U 3061 UGUUA-AAG- A-CGAACU-A CUGC(-GAAA )--GC|A--- UUUGCC-AA| AG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUG ---UUUUCAU -UAA-U|CA- A-GAACGAAA 3301 GUUAGGGGC- UCGAAGACG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CGUAG|UCU UA--ACC-AU AAACUAUGCC GAC|UA|--- 3421 --Gagau-ag gaa-a-acgu ca--(----- uccu-----) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ----ugac-u u-cu-ccu-g ca-cCuu--- ---------- ----auGA(- 3661 GAAA-)UCA- -AAGUC-uuu gGGU|-U|C- UGGGGGGAGU AU--GG-UC( --GCAA-)GG 3721 CUG-AAACUU -AAAG--GAA -UUG|AC-GG -AA-GGGCA- -CCAC-CAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --C-GU|-GG 4021 AGC-UGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--GAA ACUCACCAGG UC[cag-aca 4081 uggg-aagga uu-----gac aga(uugaua g-c)------ ucuuu----- cuu-gauu-c 4141 uauggg---- -]-------- |--------- ---------- ---------- ---------- 4201 ---------- ---|UG-GU- GGU-G-CAUG |GCC|GU-UC UUA|GUUGG- U|GGA(-GUG 4261 A-)UUUGUC- -UGG(UU-AA UU)CCGUUA- AC-GAACGAG ACCUU-AA|- ---------- 4321 ---------- ---[CCU-GC UAAAUAGggu ---------c aagaa----- -cuu-ugugu 4381 ucu--u---- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- ---------- -gu------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- -----auca- CU-------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------U CUUAGAGG]- --|------- ---------- GACU-UUG-C -G-U(----- 5041 --gucua-)A CGCA-A-GGA AGUU-UGAGG CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----cUG-UG A|UGCC|CUU 5221 A-G-A-UGUU CUGG-GCUGC A-CGCGCGCU ACACU--G-A UGCAU----- ---------- 5281 ---------- -----[ccaa cgaguuu--- ---------- ---------- ---------- 5341 ---------- ---------- ---------- ---------- ---------- ---------- 5401 acaaccc-ug gcc(gaca-) ggucu----a gguaaucuuu -ugagu]--- ---------- 5461 -------AUG CAU-C-G--- UGAU-G-GGG AUAGAUUAU( UGCAAUUA)U UAAUCUUC-A 5521 ACGAGG-AAU G--CCUAGUA GG-CGC-AAG (-UCAGCAG- )CUUGC-G-C -CGAUUACG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUCC-U-A CC-GAU--UG AG-UGUUcc- 5641 ggu-gaau-- uau-ucgga- cugu-uccg- uguc-gcg-- ---------- ---------- 5701 -------(ua cc----)--- ---------- ---------- ---------- --cg-cgu-- 5761 c-cgga-aug -ggaa-|guu -uugugaacc uu-AAC-A-C UUAG-AGGAA GG-AGAA-G- 5821 UCGUAACAAG GU-------- -----U-U-C CGUAGG(UGA A)CCUGCAGA AGGAUCA~~~ 5881 ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS S.tenella 5903 bp RNA RNA 11-JAN-191 DEFINITION Sarcocystis tenella. ACCESSION No information KEYWORDS No information. SOURCE Sarcocystis tenella. ORGANISM Sarcocystis tenella. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: L24383 LOCUS S.tenella 1782 bp ds-DNA INV 03-JAN-1994 DEFINITION Sarcocystis tenella 18S ribosomal RNA (18S rRNA) gene. ACCESSION L24383 KEYWORDS 18S ribosomal RNA. SOURCE Sarcocystis tenella tachyzoite DNA. ORGANISM Sarcocystis tenella Eukaryota; Animalia; Protozoa; Apicomplexa; Sporozoasida; Coccidiasina; Eucocciodiorida; Eimeriorina; Sarcocystidae. REFERENCE 1 (bases 1 to 1782) AUTHORS Ellis,J.T., Luton,K., Baverstock,P.B., Tenter,A.M. and Johnson,A.M. TITLE Phylogenetic relationships of Sarcocystis species determined from PCR derived complete ribosomal RNA gene sequences JOURNAL Unpublished (1993) STANDARD full automatic FEATURES Location/Qualifiers rRNA 1..1782 /product="18S ribosomal RNA" /gene="18S rRNA" source 1..1782 /organism="Sarcocystis tenella" /dev_stage="tachyzoite" /sequenced_mol="DNA" BASE COUNT 491 a 328 c 454 g 504 t 5 others ORIGIN BASE COUNT 491 a 328 c 454 g 504 t 4126 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~(~~~)~~ ~~|~~~~~~~ ~~~~~~~~~U --GCUUGUCU 61 UAAA|-GAUU Aa-GCCAUGC A-UGUCU-AA GU|------- |--------- ----[----- 121 ---------- --------au aagcuuuuu- ---------- -auac-ggc- gaa]------ 181 -----|---A CU|G-CGAA- UGGCU-CAUU AAAa-cagu- uau-aguu-- ----uauuug 241 auag<----- ---------- ---------- ---------u caucugagau gaaagucuac 301 u>ACAUGG-A UAACCGUGG( -U-AAUU)CU AUGGC-UAA- UACAUG---- ---------- 361 ---------- ---------- ---------- -- -agaucauuc -aa|guuucu ga|--CCU-A UCA--GCUUU C-GACGGUA- 1141 GU(-GUAUUG G)ACU-ACCG U-|GGCAG-U GAC|GGGU-A A-CGGG|GAA -U-(UAGG-) 1201 GUU-CGAUU- CCG|GAGAGG G-AGCC(U-G AGAAAC)GGC UACC-ACAUC (UAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GC- AAAUU-ACCC -AAUCCU-G( ---acu--)C 1321 AGGG-A-GGU -|A|GUGACA AGAA-AU--- ---------- ---------- ---------- 1381 -----|---- ---------- ---------- ---------- ---------- ---------- 1441 --------AA CAACACUGG- -AAAU(---- ---uuu-)AU UU-CU-AGUG A-UUGGAAU- 1501 ------GAUG ----GGAAUU -UAAA--CCC C-----UU-U C-AGA-GUAA C---->AAUU 1561 GGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCCAA 1621 U-AGCGUA|U AUUAA--AGU UGUUG-CAG| UUA--AAAAG CUCGUAGUUG |--------- 1681 ---------- ---------- ---------- ---------- ---------- -|-------< 1741 gaugucugcu g------gaa gcaauc---- ag-uc----- ---------- ---------- 1801 ---------- -----gc--- ccua------ -uuuguag-- -ggugu-gca cu-------- 1861 ugaugaa--- ---------- ---------- ------ucug gcauuuuguc caaug----- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ------agnc ngacucgggc aagcnucugu ucgauaugga uac------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- --ugu--CUU UG-AGAA--- 2461 AUUAGAGUGU UU-GA-CG-- AGGCuaau-- ---------- ---------- ---------- 2521 ---------- GCCU-U--ga -ucucg--AG CAUGGAA|UA -ACAAUA-UA -GGA-uUCGG 2581 uu-------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- --cu|--auu 2821 -uu-guuggu -uu-cua--- --------gg CUG-AA-AUA A--UGAUUAA UA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- --GGA|CAGU ---------- 3001 --UGGGGGCA UU|--CGUAU UUAACUG-UC -AGAG(GU-G AAA---)UUC U-UAGA-U-U 3061 UGUUA-AAG- A-CGAACU-A CUGC(-GAAA )--GC|A--- UUUGCC-AA| AG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUG ---UUUUCAU -UAA-U|CA- A-GAACGAAA 3301 GUUAGGGGC- UCGAAGACG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CCUAG|UCU UA--ACC-AU AAACUAUGCC GAC|UA|--- 3421 --Gagau-ag gaa-a-augu ca--(----u uuugc----) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ----ugac-u u-cu-ccu-g ca-cCuu--- ---------- ----auGA(- 3661 GAAA-)UCA- -AAGUC-uuu gGGU|-U|C- UGGGGGGAGU AU--GG-UC( --GCAA-)GG 3721 CUG-AAACUU -AAAG--GAA -UUG|AC-GG -AA-GGGCA- -CCAC-CAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --C-GU|-GG 4021 AGCCUGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--GAA ACUCACCAGG UC[cag-aca 4081 uggg-aagga uu-----gac aga(uugaua g-c)------ ucuuu----- cuu-gauu-c 4141 uauggg---- -]-------- |--------- ---------- ---------- ---------- 4201 ---------- ---|UG-GU- GGU-G-CAUG |GCC|GU-UC UUA|GUUGG- U|GGA(-GUG 4261 A-)UUUGUC- -UGG(UU-AA UU)CCGUUA- AC-GAACGAG ACCUU-AA|- ---------- 4321 ---------- ---[CCU-GC UAAAUAGg-- a--------- ---------- ucag-aaaca 4381 cuu--uauug u---guuuuu ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- ---------- -gu------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- -----auca- CU-------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------U CUUAGAGG]- --|------- ---------- GACU-UUG-C -G-U(----- 5041 --gucua-)A CGCA-A-GGA AGUU-UGAGG CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UG A|UGCC|CUU 5221 A-G-A-UGUU CUGG-GCUGC A-CGCGCGCU ACACU--G-A UGCAU----- ---------- 5281 ---------- -----[ccaa caaguug--- ---------- ---------- ---------- 5341 ---------- ---------- ---------- ---------- ---------- --------uu 5401 gaaaccu-ug gcc(gaua-) gguuu----a gguaaucuuu -ugagu]--- ---------- 5461 -------AUG CAU-C-G--- UGAU---GGG AUAGAUUAU( UGCAAUUA)U UAAUCUUC-A 5521 AC-AGG-AAU G--CCUAGUA GG-CGC-AAG (-UCAGCAG- )CUUGC-Gcg -CGAUUACG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCnGU nGCUCC-U-A CC-GAU--UG AG-UGUUcc- 5641 ggu-gaau-- uau-ucgga- ccgu-cccg- uuaacgcgcg ---------- ---------- 5701 -------(gc aa----)--- ---------- ---------- ---------- cgcg-ugu-- 5761 g-cgga-aug -gaaa-|guu -uugugaacc uu-AAC-A-C UUAG-AGGAA GG-AGAA-G- 5821 UCGUAACAAG G~~~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~)~~~~~~~~ ~~~~~~~~~~ 5881 ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS T.gondii.1 5903 bp RNA RNA 11-JAN-191 DEFINITION Toxoplasma gondii. ACCESSION No information KEYWORDS No information. SOURCE Toxoplasma gondii. ORGANISM Toxoplasma gondii. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: X68523 ID TG17S standard; DNA; INV; 1816 BP. XX AC X68523; XX DT 23-OCT-1992 (Rel. 33, Created) DT 23-OCT-1992 (Rel. 33, Last updated, Version 1) XX DE T.gondii gene for 17S rRNA XX KW 17S ribosomal RNA; ribosomal RNA. XX OS Toxoplasma gondii OC Eukaryota; Animalia; Protozoa; Apicomplexa; Perkinsea; Coccidia; OC Eucoccidiidae; Eimeriina; Sarcocystidae. XX RN [1] RP 1-1816 RA Ding Y.; RT ; RL Submitted (30-SEP-1992) on tape to the EMBL Data Library by: RL Y. Ding, State Univ of New York at Stony Brook, Dept of Infectious RL Disease, NY 11794, USA XX RN [2] RP 1-1816 RA Long M., Ding Y., Polin D., Luft B.J.; RT "Structural characteristics of the Toxoplasma ribosome"; RL Unpublished. XX CC *source: strain=RH; XX FH Key Location/Qualifiers FH FT rRNA <1..>1816 FT /product="17S ribosomal RNA" /partial XX SQ Sequence 1816 BP; 475 A; 368 C; 466 G; 507 T; 0 other; BASE COUNT 474 a 365 c 461 g 504 t 4099 others ORIGIN 1 |ccgaauucg ucgacAACCU GGU(UGA)UC CU|GCCAGU- A-GUCA-UAU --GCUUGUCU 61 UAAA|-GAUU AA-GCCAUGC A-UGUCU-AA GU|------- |-------(- ---)[----- 121 ---------- --------au aagcuu--uu ---------- -auac-ggc- uaa]------ 181 -----|---A CU|G-CGAA- UGGCU-CAUU AAAA-cagu- uau-aguu-- ----uauuug 241 augg<----- ---------- ---------- ---------- ---------- ---ucuuuac 301 u>ACAUGG-A UAACCGUGG( -U-AAUU)CU AUGGC-UAA- UACAUG---- ----(----) 361 ---------- -------(-- --)--|---- -- -ggaucauuc -aa|guuucu ga|--CCU-A UCA--GCUUU C-GACGGUA- 1141 CU(-GUAUUG G)ACU-ACCG U-|GGCAG-U GAC|GGGU-A A-CGGG|GAA -U-(UAGG-) 1201 GUU-CGAUU- CCG|GAGAGG G-AGCC(U-G AGAAAC)GGC UACC-ACAUC (UAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GC- AAAUU-ACCC -AAUCCU-G( ---auu--)C 1321 AGGG-A-GGU -|A|GUGACA AGAA-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AA CAACACUGG- -AAAU(---- ---uuc-)AU UU-CU-AGUG A-UUGGAAU- 1501 ------GAUA ----GGAAUC -CAAA--CCC C-----UU-U C-AGA-GUAA C---->AAUU 1561 GGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCCAA 1621 U-AGCGUA|U AUUAA--AGU UGUUG-CAG| UUA--AAAAG CUCGUAGUUG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 gauuuc-ugc u-ggaa---g gccagu--cc gc-ccucagg ggugug-cac ---------- 1801 ---------- -----uu-g- gugaau-ucu -agcauccuu cuggau-uuc uc-------- 1861 cacacuucau u-guguggag uuuuuuccag gac------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- --UUUUACUU UG-AGAA--A 2461 AUUAGAGUGU UU-CA-AG-C AGGCuu---- ---------- ---------- ---------- 2521 -------guc GCCU-U--GA AUACUG-CAG CAUGGAA|UA -AUAAGA-UA -GGAUuUCGG 2581 cc-------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ---C|-UAUU 2821 -UU-GUUGGU -UU-CU---- --ag----ga CUG-AA-GUA A--UGAUUAA UA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGA|CGGU ---------- 3001 --UGGGGGCA UU|--CGUAU UUAACUG-UC -AGAG(GU-G AAA---)UUC U-UAGA-U-U 3061 UGUUA-AAG- A-CGAACU-A CUGC(-GAA- )--GC|A--- UUUGCC-AA| AG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUG ---UUUUCAU -UAA-U|CA- A-GAACGAAA 3301 GUUAGGGGC- UCGAAGACG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CGUAG|UCU UA--ACC-AU AAACUAUGCC GAC|UA|--- 3421 --gagau-ag gaa-a-acgu ca--(----- ugcu-----) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ----ugac-u u-cu-ccu-g ca-ccuu--- ---------- ----auGA(- 3661 GAAA-)UCA- -AAGUC-UUU GGGU|-U|C- UGGGGGGAGU AU--GG-UC( --GCAA-)GG 3721 CUG-AAACUU -AAAG--GAA -UUG|AC-GG -AA-GGGCA- -CCAC-CAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --C-GU|-GG 4021 AGCCUGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--GAA ACUCACCAGG UC|cag-aca 4081 uagg-aagga uu-----gac aga(uugaua g-c)------ ucuuu----- cuu-gauu-c 4141 uauggg---- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU-G-CAUG |GCC|GU-UC UUA|GUUGG- U|GGA(-GUG 4261 A-)UUUGUC- -UGG(UU-AA UU)CCGUUA- AC-GAACGAG ACCUU-AA|- ---------- 4321 ------(--- --)[CCU-GC UAAAUAG-ga u--caggaac (uucgu)--- ---------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- ---------- -guucuug-- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ----uauca- CU-------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------U CUUAGAGG]- --|------- ---------- GACU-Uug-c -g-u(----- 5041 --gucua-)a cgca-A-GGA AGUU-UGAGG CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UG A|UGCC|CUU 5221 A-G-A-UGUU CUGG-GCUGC A-CGCGCGCU ACACU--G-A UGCAU----- ---------- 5281 ---(------ ----)[ccaa cgaguuu--- ---------- -----a---- ---------- 5341 ---------- ---------( -----)---- ---------- ---------- ---------- 5401 -uaaccu-ug gcc(gaua-) ggucu----a gguaau-cuu gugagu]--- ---------- 5461 -------aug cau-c-g--- UGAU-G-GGG AUAGAUUAU( UGCAAUUA)U UAAUCUUC-A 5521 ACGAGG-AAU G--CCUAGUA GG-CGC-AAG (-UCAGCAC- )GUUGC-G-C -CGAUUACG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUCC-U-A CC-GAA--UG AG-UGUucc- 5641 ggu-gaau-- uau-ucgga- ccgu-uuug- uggc-gcg-- ---------- ---------- 5701 -------(uu cg----)--- ---------- ---------- ---------- -----ugc-- 5761 c-cgaa-aug -ggaa-|guu -uugugaacc uu-aac-a-c uuag-AGGAA GG-AGAA-G- 5821 UCGUAACAAG GU-------- -----U-U-C CGUAGG(UGA A)CCUGCAGA AGGAUCA--- 5881 --AGC----- -------~|| ||| // LOCUS T.gondii.2 5903 bp RNA RNA 11-JAN-1988 DEFINITION Toxoplasma gondii. ACCESSION No information KEYWORDS No information. SOURCE Toxoplasma gondii. ORGANISM Toxoplasma gondii. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: M17555 LOCUS M17555 92 bp - UNA 15-MAR-1988 DEFINITION Figure 1. Sequence blocks of T. gondii srRNA (T.g.) aligned against those of Tetrahymena thermophila srRNA (T.t.) and P. berghei srRNA (P.b). ACCESSION M17555 REFERENCE 1 (bases 1 to 92) AUTHORS Johnson,A.M., Murray,P.J., Illana,S. and Baverstock,P.J. TITLE Rapid nucleotide sequence analysis of the small subunit ribosomal RNA of Toxoplasma gondii: evolutionary implications for the Apicomplexa JOURNAL Mol Biochem Parasitol 25, 239-246 (1987) STANDARD unannotated staff_entry BASE COUNT 30 a 21 c 18 g 23 t LOCUS M17556 277 bp - UNA 15-MAR-1988 DEFINITION Figure 1. Sequence blocks of T. gondii srRNA (T.g.) aligned against those of Tetrahymena thermophila srRNA (T.t.) and P. berghei srRNA (P.b). ACCESSION M17556 REFERENCE 1 (bases 1 to 277) AUTHORS Johnson,A.M., Murray,P.J., Illana,S. and Baverstock,P.J. TITLE Rapid nucleotide sequence analysis of the small subunit ribosomal RNA of Toxoplasma gondii: evolutionary implications for the Apicomplexa JOURNAL Mol Biochem Parasitol 25, 239-246 (1987) STANDARD unannotated staff_entry BASE COUNT 84 a 48 c 64 g 81 t BASE COUNT 114 a 69 c 82 g 104 t 5534 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~(~~~)~~ ~~|~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~|~~~~~~~ |~~~~~~~(~ ~~~)[~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~]~~~~~~ 181 ~~~~~|~~~~ ~~|~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~<~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 ~>~~~~~~~~ ~~~~~~~~~( ~~~~~~~)~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~) 361 ~~~~~~~~~~ ~~~~~~~(~~ ~~)~~|~~~~ ~~<~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~)~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~)~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~|~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~)~~ ~~~~~~~~~~ 1081 ~~~~~~~~~> ~~~~~~~~~~ ~~~|~~~~~~ ~~|~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~(~~~~~~~ ~)~~~~~~~~ ~~|~~~~~~~ ~~~|~~~~~~ ~~~~~~|~~~ ~~~(~~~~~) 1201 ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~(~~~ ~~~~~~)~~~ ~~~~~~~~~~ (~~~~~)~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ ~~AUU-ACCC -AAUCCU-G( ---aac--)C 1321 AGGG-A-GG- -|A|GUGAC- -GAA-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AA CAACACUGG- --AAA(---- ---uuuc)UU U--CU-AGUG A-UUGGAAU- 1501 ------GAUA ----GGAAUC -CACC--CCC C-----UU-U .-........ .---->.... 1561 ....|..-.. .-..-..... .-.(...-.. -....|..-. ..-..).... ..-|...... 1621 .-......|. .....--... .....-...| .......... .......... |......... 1681 .|........ .......... ..(.....). .......... .......... .|.......< 1741 .......... .-....-... ......--.- ..-....... ......-... ---------- 1801 ---------- ------.-.- ......-.-- -......... ......-... ..-------- 1861 .......... .-........ .......... .......... .......... .....----- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ------.... .......... .......... .......... .......... .......... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... .......... .......... .........- .......-.. .......... 2161 .......--- ---------- ---------- ---....... ....------ ---------- 2221 ----...... .......... .......... .......... .......... .......... 2281 .......... .......... .......... .......... .......... .......... 2341 .......... .......... ....------ ---------- ---------- ---------- 2401 ---------- ---------- ---------- ----...... .......... ..-....--. 2461 .......... ........-. .........- -------.-- ---------- -......... 2521 .......... ....-.--.. .......... .......|.. .aua-ga-ua --gau-uc-g 2581 c--------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- --cc|-uauu 2821 --u-gu-GGU -UU-CU---- --ag----ga CUG-AA-GUA A--UGAUUAA UA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- --gga|c--- ---------- 3001 --GGUGGGGC UU|--CGUAU UUAACUG-UC -AGAG(GU-G AAA---)UUC U-UAGA-U-U 3061 UGUUA-AAG- A-CGA-CU-A CUGC(-GAAA )--GC|A--- UUUGCC-AA| AG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUG ---UUUUCAU -UAA-U|CA- A-GAACGAAA 3301 GUUAGGGGC- UCGAAGACG( AUC------- ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CGUAG|UCU UA--ACC-AU AAACUAUGCC GAC|UA|--- 3421 --gagau-ag gaa-a-acgu ca--(----- ugcu-----) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ----ugac-u u-cu-cc--- -c-ccuu--- ---------- ----auGA(- 3661 GAAA-)UC-- -AAGUC-UUU GGG~|~~|~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ -~~~~~~~~~ ~~~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --~~~~|~~~ 4021 ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~-~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~-----~~~ ~~~~~~~~~~ ~-~~--~~~~ ~~~~~----- ~~~-~~~~~~ 4141 ~~~~~~~~~~ ~]~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ ~~~~|~~~~~ ~~~~~~~~~- ~~~~~~~~~~ 4261 ~-~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~-~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4441 --~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ---~~~~~~~ ~|~~~~|~~~ 5221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5281 ~~~~-~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5461 ~~~~~~~~~~ ~~~~~-~~-- ~~~~-~-~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5521 ~~~~~~~~~~ ~-~~~~~~~~ ~~~~~~~~~~ ~-~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5581 ~~~~~~~~~~ ~~|~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5641 ~~~-~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5701 ~~~~~~-~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~-~ 5761 ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5881 ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS T.gondii.3 5903 bp RNA RNA 11-JAN-191 DEFINITION Toxoplasma gondii. ACCESSION No information KEYWORDS No information. SOURCE Toxoplasma gondii. ORGANISM Toxoplasma gondii. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: U03070 LOCUS TGU03070 1788 bp DNA INV 04-NOV-1993 DEFINITION Toxoplasma gondii 18S rRNA gene. ACCESSION U03070 KEYWORDS . SOURCE Toxoplasma gondii ORGANISM Toxoplasma gondii Eucaryotae; Protozoa; Apicomplexa; Sporozoa; Coccidia; Eucoccidiida; Eimeriina; Sarcocystidae; Toxoplasma. REFERENCE 1 (bases 1 to 1788) AUTHORS Holmdahl,J.O., Mattsson,J.G., Uggla,A. and Johansson,K. TITLE The phylogeny of Neospora caninum and Toxoplasma gondii based on ribosomal RNA sequences JOURNAL Unpublished STANDARD full automatic REFERENCE 2 (bases 1 to 1788) AUTHORS Holmdahl,J.O. TITLE Direct Submission JOURNAL Submitted (02-NOV-1993) Joakim O.M. Holmdahl, Department of Veterinary Microbiology, Section of Parasitology, Uppsala S-750 07, Sweden STANDARD full automatic FEATURES Location/Qualifiers rRNA 1..1788 /product="18S rRNA" source 1..1788 /organism="Toxoplasma gondii" /specific_host="Felis catus" /dev_stage="tachyzoite" /isolate="RH" BASE COUNT 470 a 359 c 457 g 502 t ORIGIN BASE COUNT 470 a 359 c 457 g 502 t 4115 others ORIGIN 1 |~~~~~~~~~ ~~~~~~ACCU GGU(UGA)UC CU|GCCAGU- A-GUCA-UAU --GCUUGUCU 61 UAAA|-GAUU AA-GCCAUGC A-UGUCU-AA GU|------- |-------(- ---)[----- 121 ---------- --------au aagcuu--uu ---------- -auac-ggc- uaa]------ 181 -----|---A CU|G-CGAA- UGGCU-CAUU AAAA-cagu- uau-aguu-- ----uauuug 241 augg<----- ---------- ---------- ---------- ---------- ---ucuuuac 301 u>ACAUGG-A UAACCGUGG( -U-AAUU)CU AUGGC-UAA- UACAUG---- ----(----) 361 ---------- -------(-- --)--|---- -- -ggaucauuc -aa|guuucu ga|--CCU-A UCA--GCUUU C-GACGGUA- 1141 CU(-GUAUUG G)ACU-ACCG U-|GGCAG-U GAC|GGGU-A A-CGGG|GAA -U-(UAGG-) 1201 GUU-CGAUU- CCG|GAGAGG G-AGCC(U-G AGAAAC)GGC UACC-ACAUC (UAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GC- AAAUU-ACCC -AAUCCU-G( ---auu--)C 1321 AGGG-A-GGU -|A|GUGACA AGAA-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AA CAACACUGG- -AAAU(---- ---uuc-)AU UU-CU-AGUG A-UUGGAAU- 1501 ------GAUA ----GGAAUC -CAAA--CCC C-----UU-U C-AGA-GUAA C---->AAUU 1561 GGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCCAA 1621 U-AGCGUA|U AUUAA--AGU UGUUG-CAG| UUA--AAAAG CUCGUAGUUG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 gauuuc-ugc u-ggaa-gca gccagu--cc gc-ccucagg ggugug-cac ---------- 1801 ---------- -----uu-g- gugaau-ucu -agcauccuu cuggau-uuc uc-------- 1861 cacacuucau u-guguggag uuuuuuccag gac------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- --UUUUACUU UG-AGAA--A 2461 AUUAGAGUGU UU-CA-AG-C AGGCuu---- ---------- ---------- ---------- 2521 -------guc GCCU-U--GA AUACUG-CAG CAUGGAA|UA -AUAAGA-UA -GGAUuUCGG 2581 cc-------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ---c|-UAUU 2821 -UU-GUUGGU -UU-CU---- --ag----ga CUG-AA-GUA A--UGAUUAA UA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGA|CGGU ---------- 3001 --UGGGGGCA UU|--CGUAU UUAACUG-UC -AGAG(GU-G AAA---)UUC U-UAGA-U-U 3061 UGUUA-AAG- A-CGAACU-A CUGC(-GAAA )--GC|A--- UUUGCC-AA| AG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUG ---UUUUCAU -UAA-U|CA- A-GAACGAAA 3301 GUUAGGGGC- UCGAAGACG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CGUAG|UCU UA--ACC-AU AAACUAUGCC GAC|UA|--- 3421 --gagau-ag gaa-a-acgu ca--(----- ugcu-----) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ----ugac-u u-cu-ccu-g ca-ccuu--- ---------- ----AUGA(- 3661 GAAA-)UCA- -AAGUC-UUU GGGU|-U|C- UGGGGGGAGU AU--GG-UC( --GCAA-)GG 3721 CUG-AAACUU -AAAG--GAA -UUG|AC-GG -AA-GGGCA- -CCAC-CAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --C-GU|-GG 4021 AGCCUGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--GAA ACUCACCAGG UC[cag-aca 4081 uagg-aagga uu-----gac aga(uugaua g-c)------ ucuuu----- cuu-gauu-c 4141 uauggg---- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU-G-CAUG |GCC|GU-UC UUA|GUUGG- U|GGA(-GUG 4261 A-)UUUGUC- -UGG(UU-AA UU)CCGUUA- AC-GAACGAG ACCUU-AA|- ---------- 4321 ------(--- --)[CCU-GC UAAAUAG-ga u--caggaac (uucgu)--- ---------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- ---------- -guucuug-- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ----uauca- CU-------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------U CUUAGAGG]- --|------- ---------- GACU-UUG-c -g-u(----- 5041 --gucua-)a cgca-A-GGA AGUU-UGAGG CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UG A|UGCC|CUU 5221 A-G-A-UGUU CUGG-GCUGC A-CGCGCGCU ACACU--G-A UGCAU----- ---------- 5281 ---(------ ----)[ccaa cgaguuu--- ---------- -----a---- ---------- 5341 ---------- ---------( -----)---- ---------- ---------- ---------- 5401 -uaaccu-ug gcc(gaua-) ggucu----a gguaau-cuu gugagu]--- ---------- 5461 -------aug cau-c-g--- UGAU-G-GGG AUAGAUUAU( UGCAAUUA)U UAAUCUUC-A 5521 ACGAGG-AAU G--CCUAGUA GG-CGC-AAG (-UCAGCAC- )GUUGC-G-C -CGAUUACG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUCC-U-A CC-GAU--UG AG-UGUucc- 5641 ggu-gaau-- uau-ucgga- ccgu-uuug- uggc-gcg-- ---------- ---------- 5701 -------(uu cg----)--- ---------- ---------- ---------- -----ugc-- 5761 c-cgaa-aug -ggaa-|guu -uugugaacc uu-aac-a-c uuag-AGGAA GG-AGAA-G- 5821 UCGUAACAAG GU-------- -----U-U-C CGUAGG(UGA A)CCUGCAGA AGGAUCA~~~ 5881 ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS T.gondii.4 5903 bp RNA RNA 11-JAN-191 DEFINITION Toxoplasma gondii (strain RH Australian). ACCESSION No information KEYWORDS No information. SOURCE Toxoplasma gondii (strain RH Australian). ORGANISM Toxoplasma gondii (strain RH Australian). REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: L24381 LOCUS T.gondii.4 1721 bp ds-DNA INV 03-JAN-1994 DEFINITION Toxoplasma gondii 18S ribosomal (18S rRNA) gene. ACCESSION L24381 KEYWORDS 18S ribosomal RNA. SOURCE Toxoplasma gondii (strain RH Australian) tachyzoite DNA. ORGANISM Toxoplasma gondii Eukaryota; Animalia; Protozoa; Apicomplexa; Sporozoasida; Coccidiasina; Eucocciodiorida; Eimeriorina; Sarcocystidae. REFERENCE 1 (bases 1 to 1721) AUTHORS Ellis,J.T., Luton,K., Baverstock,P.R., Brindley,P. and Johnson,A.M. TITLE Phylogeny of Neospora caninum and Toxoplasma gondii JOURNAL Unpublished (1993) STANDARD full automatic FEATURES Location/Qualifiers rRNA 1..1721 /product="18S ribosomal RNA" /gene="18S rRNA" source 1..1721 /organism="Toxoplasma gondii" /strain="RH Australian" /dev_stage="tachyzoite" /sequenced_mol="DNA" BASE COUNT 454 a 343 c 436 g 485 t 3 others ORIGIN BASE COUNT 454 a 343 c 436 g 485 t 4185 others ORIGIN 1 |~~~~~~~~~ ~~~~~nnnnn nnn(nnn)nn nn|nnnnnn- n-nnnA-UAU --GCUUGUCU 61 UAAA|-GAUU AA-GCCAUGC A-UGUCU-AA GU|------- |-------(- ---)[----- 121 ---------- --------au aagcuu--uu ---------- -auac-ggc- uaa]------ 181 -----|---A CU|G-CGAA- UGGCU-CAUU AAAA-cagu- uau-aguu-- ----uauuug 241 augg<----- ---------- ---------- ---------- ---------- ---ucuuuac 301 u>ACAUGG-A UAACCGUGG( -U-AAUU)CU AUGGC-UAA- UACAUG---- ----(----) 361 ---------- -------(-- --)--|---- -- -ggaucauuc -aa|guuucu ga|--CCU-A UCA--GCUUU C-GACGGUA- 1141 CU(-GUAUUG G)ACU-ACCG U-|GGCAG-U GAC|GGGU-A A-CGGG|GAA -U-(UAGG-) 1201 GUU-CGAUU- CCG|GAGAGG G-AGCC(U-G AGAAAC)GGC UACC-ACAUC (UAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GC- AAAUU-ACCC -AAUCCU-G( ---auu--)C 1321 AGGG-A-GGU -|A|GUGACA AGAA-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AA CAACACUGG- -AAAU(---- ---uuc-)AU UU-CU-AGUG A-UUGGAAU- 1501 ------GAUA ----GGAAUC -CAAA--CCC C-----UU-U C-AGA-GUAA C---->AAUU 1561 GGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCCAA 1621 U-AGCGUA|U AUUAA--AGU UGUUG-CAG| UUA--AAAAG CUCGUAGUUG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 gauuuc-ugc u-ggaa-gca gccagu--cc gc-ccucagg ggugug-cac ---------- 1801 ---------- -----uu-g- gugaau-ucu -agcauccuu cuggau-uuc uc-------- 1861 cacacuucau u-guguggag uuuuuuccag gac------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- --UUUUACUU UG-AGAA--A 2461 AUUAGAGUGU UU-CA-AG-C AGGCuu---- ---------- ---------- ---------- 2521 -------guc GCCU-U--GA AUACUG-CAG CAUGGAA|UA -AUAAGA-UA -GGAUuUCGG 2581 cc-------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ---C|-UAUU 2821 -UU-GUUGGU -UU-CU---- --ag----ga CUG-AA-GUA A--UGAUUAA UA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- --GGA|CGGU ---------- 3001 --UGGGGGCA UU|--CGUAU UUAACUG-UC -AGAG(GU-G AAA---)UUC U-UAGA-U-U 3061 UGUUA-AAG- A-CGAACU-A CUGC(-GAAA )--GC|A--- UUUGCC-AA| AG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUG ---UUUUCAU -UAA-U|CA- A-GAACGAAA 3301 GUUAGGGGC- UCGAAGACG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CGUAG|UCU UA--ACC-AU AAACUAUGCC GAC|UA|--- 3421 --gagau-ag gaa-a-acgu a---(----- ugcu-----) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ----ugac-u u-cu-ccu-g ca-ccuu--- ---------- ----AUGA(- 3661 GAAA-)UCA- -AAGUC-UUU GGGU|-U|C- UGGGGGGAGU AU--GG-UC( --GCAA-)GG 3721 CUG-AAACUU -AAAG--GAA -UUG|AC-GG -AA-GGGCA- -CCAC-CAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --C-GU|-GG 4021 AGCCUGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--GAA ACUCACCAGG UC[cag-aca 4081 uagg-aagga uu-----gac aga(uugaua g-c)------ ucuuu----- cuu-gauu-c 4141 uauggg---- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU-G-CAUG |GCC|GU-UC UUA|GUUGG- U|GGA(-GUG 4261 A-)UUUGUC- -UGG(UU-AA UU)CCGUUA- AC-GAACGAG ACCUU-AA|- ---------- 4321 ------(--- --)[CCU-GC UAAAUAG-ga u--caggaac (uucgu)--- ---------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- ---------- -guucuug-- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ----uauca- CU-------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------U CUUAGAGG]- --|------- ---------- GACU-Uug-c -g-u(----- 5041 --gnnua-)a cgca-A-GGA AGUU-UGAGG CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UG A|UGCC|CUU 5221 A-G-A-UGUU CUGG-GCUGC A-CGCGCGCU ACACU--G-A UGCAU----- ---------- 5281 ---(------ ----)[ccaa cgaguuu--- ---------- -----a---- ---------- 5341 ---------- ---------( -----)---- ---------- ---------- ---------- 5401 -uaaccu-ug gcc(gaua-) ggucu----a gguaau-cuu gugagu]--- ---------- 5461 -------aug cau-c-g--- UGAU-G-GGG AUAGAUUAU( UGCAAUUA)U UAAUCUUC-A 5521 ACGAGG-AAU G--CCUAGUA GG-CGC-AAG (-UCAGCAG- )CUUGC-G-C -CGAUUACG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUCC-U-A CC-GAU--ug ag-uguucc- 5641 ggu-gaau-- uau-ucgga- ccgu-uuug- uggc-gcg-- ---------- ---------- 5701 -------(uu cg----)--- ---------- ---------- ---------- -----ugc-- 5761 c-cgaa-aug -ngaa-|guu -uugugaacc uu-aac-a-c uuag-AGGAA GG-AGAA-n- 5821 nnnnnnnnnn nn-------- -----n-n-n nnnnnn(nnn n)nnnnnnnn nnnnnnn... 5881 ..nnn~~~~~ ~~~~~~~~|| ||| // LOCUS T.gondii.5 5903 bp RNA RNA 11-JAN-191 DEFINITION Toxoplasma gondii, strain ts-4. ACCESSION No information KEYWORDS No information. SOURCE Toxoplasma gondii, strain ts-4. ORGANISM Toxoplasma gondii, strain ts-4. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: U00458 ID TG458 standard; DNA; INV; 1781 BP. XX AC U00458; XX DT 02-JAN-1994 (Rel. 38, Created) DT 02-JAN-1994 (Rel. 38, Last updated, Version 1) XX DE Toxoplasma gondii, strain ts-4, small subunit ribosomal RNA gene XX KW 18S rRNA gene; SSU rRNA gene. XX OS Toxoplasma gondii OC Eukaryota; Animalia; Protozoa; Apicomplexa; Perkinsiea; Coccidia; OC Eucoccidiidae; Eimeriina; Sarcocystidae. XX RN [1] RP 1-1781 RA Nimmo K.A., Brindley P.J., Denkers E.Y.; RT "Molecular analysis of ribosomal genes of virulent and avirulent RT strains of Toxoplasma gondii"; RL Unpublished. XX RN [2] RP 1-1781 RA Nimmo K.A.; RT ; RL Submitted (09-AUG-1993) to the EMBL/GenBank/DDBJ databases. RL Nimmo K. A., Queensland Institute of Medical Research, Tropical RL Health Program, 300 Herston Road, Herston, Brisbane, Queensland, RL Australia, 4029 XX FH Key Location/Qualifiers FH FT source 1..1781 FT /strain="ts-4" FT /organism="Toxoplasma gondii" FT /macronuclear FT /dev_stage="Tachyzoite" XX SQ Sequence 1781 BP; 465 A; 361 C; 453 G; 502 T; 0 other; BASE COUNT 465 a 361 c 453 g 502 t 4122 others ORIGIN 1 |~~~~~~~~~ cugcaGAUCU GGU(UGA)UC CU|GCCAGU- A-GUCA-UAU --GCUUGUCU 61 UAAA|-GAUU AA-GCCAUGC A-UGUCU-AA GU|------- |-------(- ---)[----- 121 ---------- --------au aagcuu--uu ---------- -auac-ggc- uaa]------ 181 -----|---A CU|G-CGAA- UGGCU-CAUU AAAA-cagu- uau-aguu-- ----uauuug 241 augg<----- ---------- ---------- ---------- ---------- ---ucuuuac 301 u>ACAUGG-A UAACCGUGG( -U-AAUU)CU AUGGC-UAA- UACAUG---- ----(----) 361 ---------- -------(-- --)--|---- -- -ggaucauuc -aa|guuucu ga|--CCU-A UCA--GCUUU C-GACGGUA- 1141 CU(-GUAUUG G)ACU-ACCG U-|GGCAG-U GAC|GGGU-A A-CGGG|GAA -U-(UAGG-) 1201 GUU-CGAUU- CCG|GAGAGG G-AGCC(U-G AGAAAC)GGC UACC-ACAUC (UAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GC- AAAUU-ACCC -AAUCCU-G( ---auu--)C 1321 AGGG-A-GGU -|A|GUGACA AGAA-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AA CAACACUGG- -AAAU(---- ---uuc-)AU UU-CU-AGUG A-UUGGAAU- 1501 ------GAUA ----GGAAUC -CAAA--CCC C-----UU-U C-AGA-GUAA C---->AAUU 1561 GGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCCAA 1621 U-AGCGUA|U AUUAA--AGU UGUUG-CAG| UUA--AAAAG CUCGUAGUUG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 gauuuc-ugc u-ggaa-gca gccagu--cc gc-ccucagg ggugug-cac ---------- 1801 ---------- -----uu-g- gugaau-ucu -agcauccuu cuggau-uuc uc-------- 1861 cacacuucau u-guguggag uuuuuuccag gac------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- --UUUUACUU UG-AGAA--A 2461 AUUAGAGUGU UU-CA-AG-C AGGCuu---- ---------- ---------- ---------- 2521 -------guc GCCU-U--GA AUACUG-CAG CAUGGAA|UA -AUAAGA-UA -GGAUuUCGG 2581 cc-------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ---C|-UAUU 2821 -UU-GUUGGU -UU-CU---- --ag----ga CUG-AA-GUA A--UGAUUAA UA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -gGGA|CGGU ---------- 3001 --UGGGGGCA UU|--CGUAU UUAACUG-UC -AGAG(GU-G AAA---)UUC U-UAGA-U-U 3061 UGUUA-AAG- A-CGAACU-A CUGC(-GAA- )--GC|A--- UUUCCC-AA| AG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUG ---UUUUCAU -UAA-U|CA- A-GAACGAAA 3301 GUUAGGGGC- UCGAAGACG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CGUAG|UCU UA--ACC-AU AAACUAUGCC GAC|UA|--- 3421 --gagau-ag gaa-a-acgu ca--(----- ugcu-----) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ----ugac-u u-cu-ccu-g ca-ccuu--- ---------- ----AUGA(- 3661 GAAA-)UCA- -AAGUC-UUU GGGU|-U|C- UGGGGGGAGU AU--GG-UC( --GCAA-)GG 3721 CUG-AAACUU -AAAG--GAA -UUG|AC-GG -AA-GGGCA- -CCAC-CAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --C-GU|-GG 4021 AGCCUGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--GAA ACUCACCAGG UC[cag-aca 4081 uagg-aggga uu-----gac aga(uugaua g-c)------ ucuuu----- cuu-gauu-c 4141 uauggg---- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU-G-CAU- |GCC|GU-UC UUA|GAUGG- U|GGA(-GUG 4261 A-)UUUGUC- -UGG(GU-AA UU)CCGUUA- AC-GAACGAG ACCUU-AA|- ---------- 4321 ------(--- --)[CCU-GC UAAAUAG-ga u--caggaac (uucgu)--- ---------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- ---------- -guucuug-- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ----uauca- CU-------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------U CUUAGAGG]- --|------- ---------- GACU-Uug-c -g-u(----- 5041 --gucua-)a cgca-A-CGA AGUU-UGAGG CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UG A|UGCC|CUU 5221 A-G-A-UGUU CUGG-GCUGC A-CGCGCGCU ACACU--G-A UGCAU----- ---------- 5281 ---(------ ----)[ccaa cgaguuu--- ---------- -----a---- ---------- 5341 ---------- ---------( -----)---- ---------- ---------- ---------- 5401 -uaaccu-ug gcc(gaua-) ggucu----a gguaau-cuu gugagu]--- ---------- 5461 -------aug cau-c-g--- UGAU-G-GGG AUAGAUUAU( UGCAAUUA)U UAAUCUUC-A 5521 ACGAGG-AAU G--CCUAGUA GG-CGC-AAG (-UCAGCAG- )CUUGC-G-C -CGAUUACG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUCC-U-A CC-GAU--ug ag-uguucc- 5641 ggu-gaau-- uau-ucgga- ccgu-uuug- uggc-gcg-- ---------- ---------- 5701 -------(uu cg----)--- ---------- ---------- ---------- -----ugc-- 5761 c-cgaa-aug -guaa-|guu -uugugaacc uu-aac-a-c uuag-AGGAA GG-AGAA-G- 5821 UCGUAACAAG GU-------- -----U-U-C CGUAGG(UGA A)CCUnnnnn nnnnnnn... 5881 ..nnn~~~~~ ~~~~~~~~|| ||| // LOCUS T.gondii.6 5903 bp RNA RNA 11-JAN-191 DEFINITION Toxoplasma gondii. ACCESSION No information KEYWORDS No information. SOURCE Toxoplasma gondii. ORGANISM Toxoplasma gondii. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: X65508 ID TG16SR standard; DNA; INV; 1788 BP. XX AC X65508; XX DT 04-OCT-1994 (Rel. 41, Created) DT 04-OCT-1994 (Rel. 41, Last updated, Version 8) XX DE T.gondii 16S-like rRNA XX KW 16S-like rRNA; small subunit ribosomal RNA. XX OS Toxoplasma gondii OC Eukaryota; Animalia; Protozoa; Apicomplexa; Perkinsiea; Coccidia; OC Eucoccidiidae; Eimeriina; Sarcocystidae. XX RN [1] RL revised by author 04-OCT-94 RP 1-1788 RL van de Ven E.M.E.; RL ; RL Submitted (13-APR-1992) to the EMBL/GenBank/DDBJ databases. RL E.M.E. Van De Ven, Dept of Medical Microbiology, University of RL Nijmegen, P.O. Box 9101, 6500 HB Nijmegen, THE NETHERLANDS RL RN [2] RP 1-1788 RL van de Ven E.M.E., Galama J.M., Melchers W.J.G.; RL "Sequence of a small subunit rRNA gene of Toxoplasma gondii and RL its use in phylogenetic analysis"; RL Unpublished. XX FH Key Location/Qualifiers FH FT source 1..1788 FT /organism="Toxoplasma gondii" FT /strain="RH" FT /dev_stage="tachyzoite" FT rRNA 1..1788 FT /product="16S-like rRNA" XX SQ Sequence 1788 BP; 475 A; 361 C; 451 G; 501 T; 0 other; BASE COUNT 475 a 361 c 451 g 501 t 4115 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~CCU GGU(UGA)UC CU|GCCAGU- A-GUCA-UAU --GCUUGUCU 61 UAAA|-GAUU AA-GCCAUGC A-UGUCU-AA GU|------- |-------(- ---)[----- 121 ---------- --------au aagcuu--uu ---------- -auac-ggc- gaa]------ 181 -----|---A CU|G-CGAA- UGGCU-CAUU AAAA-cagu- uau-aguu-- ----uauuug 241 augg<----- ---------- ---------- ---------- ---------- ---ucuuuac 301 u>ACAUGG-A UAACCGUGG( -U-AAUU)CU AUGGC-UAA- UACAUG---- ---------- 361 ---------- ---------- ---------- -- -gaaucauuc -aa|guuucu ga|--CCU-A UCA--GCUUU C-GACGGUA- 1141 CU(-GUAUUG G)ACU-ACCG U-|GGCAG-U GAC|GGGcua aaCGGA|UAA -U-(UAGG-) 1201 GUU-CGAUU- CCG|GAGAAG G-AGCC(u-- -gaaac)GGC UACC-ACAUC (UAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GC- AAAUU-ACCC -AAUCCU-G( ---auu--)C 1321 AGG--A-GGU -|A|GUGACA AGAA-AU--- ---------- ---------- ---------- 1381 -----|---- ---------- ---------- ---------- ---------- ---------- 1441 --------AA CAACACUGG- -AAAU(---- ---uuc-)AU UU-CU-AGUG A-UUGGAAU- 1501 ------GAua ----ggaauc -caaa--ccc c-----uu-u c-aga-guaa c---->aauu 1561 ggag|gg-ca a-gu-c-ugg u-g(cca-gc -agcc|gc-g gu-aa)uucc ag-|cuccaa 1621 u-AGCGUA|U AUUAA--AGU UGUUG-CAG| UUA--AAAAG CUCGUAGUUG |--------- 1681 ---------- ---------- ---------- ---------- ---------- -|-------< 1741 gauuuc-ugc u-ggaa-gca gccagu--cc gc-ccuucag ggugug-cac ---------- 1801 ---------- -----uu-g- guacgaauuc uagcauccuu cuggau-uuc uc-------- 1861 cacacuucau u-guguggag uuuuuuc-ag gac------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- --uuuuacuu ug-agaa--a 2461 auuagagugu uu-ca-aggc aggcuu---- ---------- ---------- ---------- 2521 -------guc GCCU-U--GA AUACUG-CAG CAUGGAA|UA -AUAAGA-UA -GGAUuUCGG 2581 cc-------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ---c|-UAUU 2821 -UU-GUUGGU -UU-CU---- --ag----ga CUG-AA-GUA A--UGAUUAA UA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -ggga|cagg u--------- 3001 --UGGGGGCA UU|--CGUAU UUAACUG-UC -AGAG(GU-G AAA---)UUC U-UAGA-U-U 3061 UGUUA-AAG- A-CGAACU-A CUGC(-GAAA )--GC|A--- uuugcc-aa| ag-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------aug -----uuc-u -uaa-u|ca- a-gaacgaaa 3301 guuaggggc- UCGAAGACG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CGUAG|UCU UA--ACC-AU AAACUAUGCC GAC|UA|--- 3421 --gagau-ag gaa-aaacgu gca-(----- ugcu-----) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ----ugac-u u-cu-ccu-g ca-ccuu--- ---------- ----auGA(- 3661 GAAA-)UCA- -AAGUC-UUU GGGU|-U|C- UGGGGGGAGU AU--GG-UC( --GCAA-)GG 3721 CUG-AAACUU -AAAG--GAA -UUG|AC-GG -AA-GGGCA- -CCAC-CAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --C-GU|-GG 4021 AGCCUGCG|G CUUCAAUUUG (ACUCAA-CA )CGGG--GAA ACUCACCAGG UC[cag-aca 4081 uagg-aagga uu-----gac aga(uugaua g-c)------ u-uuu----- uuu-gauu-c 4141 uauggg---- -]-------- |--------- ---------- ---------- ---------- 4201 ---------- ---|ug-gu- ggu-g-caug |gcc|gu-uc uua|guugg- u|gga(-gug 4261 a-)uuuguc- -ugg(uu-aa uu)ccguua- ac-gaacgag accuu-aa|- ---------- 4321 ---------- ---[ccu-gc uaaauag-ga u--caggaac (uucgu)--- ---------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- ---------- -guucuug-- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ----uauca- cu-------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------u cuuagagg]- --|------- ---------- gacu-uug-c -g-u(----- 5041 --gucua-)a cgca-a-gga aguu-ugagg caauaa--ca ggu------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----cug-ug a|ugcc|cuu 5221 a-g-a-uguu cugg-gcugc a-cgcgcgcu acacu--g-a ugcau----- ---------- 5281 ---------- -----[ccaa cgaguuu--- ---------- -----a---- ---------- 5341 ---------- ---------- ---------- ---------- ---------- ---------- 5401 -uaaccu-ug gcc(gaua-) -gucu----a gguaau-cuu gugagu]--- ---------- 5461 -------aug cau-c-g--- ugau-g-g-g auagauuau( ugcaauua)u uaaucuuc-A 5521 ACGAGG-AAU G--CCUAGUA GG-CGC-AAG (-UCAGCAG- )CUUGC-G-C -CGAUUACG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUCC-U-A CC-GAU--ug ag-uguucc- 5641 ggu-gaau-- uau-ucgga- ccgu-ucug- uggc-gcg-- ---------- ---------- 5701 -------(uu cg----)--- ---------- ---------- ---------- -----ugc-- 5761 c-cgaa-aug --gaa-|guu -uugugaacc uu-aac-a-c uuag-AGGAA GG-AGAA-G- 5821 UCGUAACAAG GU-------- -----U-U-C CGUAGG(UGA A)CCUGCAGA AGGAUCA--- 5881 --AGC~~~~~ ~~~~~~~~|| ||| // LOCUS T.gondii.7 5903 bp RNA RNA 11-JAN-191 DEFINITION Toxoplasma gondii (strain ME49). ACCESSION No information KEYWORDS No information. SOURCE Toxoplasma gondii (strain ME49). ORGANISM Toxoplasma gondii (strain ME49). REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: L37415 LOCUS TOXRRE 1738 bp ss-rRNA RNA 31-JAN-1995 DEFINITION Toxoplasma gondii 18S ribosomal RNA (18S rRNA). ACCESSION L37415 KEYWORDS 18S ribosomal RNA. SOURCE Toxoplasma gondii (strain ME49) tachyzoite rRNA. ORGANISM Toxoplasma gondii Eukaryota; Protozoa; Apicomplexa; Conoidea; Coccidea; Coccidiasina; Eucocciodiorida; Eimeriorina; Sarcocystidae. REFERENCE 1 (bases 1 to 1738) AUTHORS Luton,K., Gleeson,M. and Johnson,A.M. TITLE rRNA gene sequence heterogeneity among Toxoplasma gondii strains JOURNAL Unpublished (1995) STANDARD full automatic COMMENT NCBI gi: 642127 FEATURES Location/Qualifiers source 1..1738 /organism="Toxoplasma gondii" /strain="ME49" /dev_stage="tachyzoite" /sequenced_mol="rRNA" rRNA 1..1738 /gene="18S rRNA" /product="18S ribosomal RNA" BASE COUNT 458 a 348 c 442 g 490 t ORIGIN BASE COUNT 458 a 348 c 442 g 490 t 4165 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~(~~~)~~ ~~|~~~~~~~ ~~~UCA-UAU --GCUUGUCU 61 UAAA|-GAUU AA-GCCAUGC A-UGUCU-AA GU|------- |-------(- ---)[----- 121 ---------- --------au aagcuu--uu ---------- -auac-ggc- uaa]------ 181 -----|---A CU|G-CGAA- UGGCU-CAUU AAAA-cagu- uau-aguu-- ----uauuug 241 augg<----- ---------- ---------- ---------- ---------- ---ucuuuac 301 u>ACAUGG-A UAACCGUGG( -U-AAUU)CU AUGGC-UAA- UACAUG---- ---------- 361 ---------- ---------- ---------- -- -ggaucauuc -aa|guuucu ga|--CCU-A UCA--GCUUU C-GACGGUA- 1141 CU(-GUAUUG G)ACU-ACCG U-|GGCAG-U GAC|GGGU-A A-CGGG|GAA -U-(UAGG-) 1201 GUU-CGAUU- CCG|GAGAGG G-AGCC(U-G AGAAAC)GGC UACC-ACAUC (UAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GC- AAAUU-ACCC -AAUCCU-G( ---auu--)C 1321 AGGG-A-GGU -|A|GUGACA AGAA-AU--- ---------- ---------- ---------- 1381 -----|---- ---------- ---------- ---------- ---------- ---------- 1441 --------aa caacacugg- -aaau(---- ---uuc-)au uu-cu-agug a-uuggaau- 1501 ------gaua ----ggaauc -caaa--ccc c-----uu-u c-aga-guaa c---->aauu 1561 ggag|gg-ca a-gu-c-ugg u-g(cca-gc -agcc|gc-g gu-aa)uucc ag-|cuccaa 1621 u-AGCGUA|U AUUAA--AGU UGUUG-CAG| UUA--aaaag cucguaguug |--------- 1681 ---------- ---------- ---------- ---------- ---------- -|-------< 1741 gauuuc-ugc u-ggaa-gca gccagu--cc gc-ccucagg ggugug-cac ---------- 1801 ---------- -----uu-g- gugaau-ucu -agcauccuu cuggau-uuc uc-------- 1861 cacacuucau u-guguggag uuuuuuccag gac------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- --uuuuacuu ug-agaa--a 2461 auuagagugu uu-ca-ag-c a-gcuu---- ---------- ---------- ---------- 2521 -------guc gccu-u--ga auacug-cag cauggaa|UA -AUAAGA-UA -GGAUuUCGG 2581 cc-------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ---c|-UAUU 2821 -UU-GUUGGU -UU-CU---- --ag----ga CUG-AA-GUA A--UGAUUAA UA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -ggga|cggu ---------- 3001 --UGGGGGCA UU|--CGUAU UUAACUG-UC -AGAG(GU-G AAA---)UUC U-UAGA-U-U 3061 UGUUA-AAG- A-CGAACU-A CUGC(-GAAA )--GC|A--- uuugcc-aa| ag-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------aug ---uuuucau -uaa-u|ca- a-gaacgaaa 3301 guuaggggc- UCGAAGACG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CGUAG|UCU UA--ACC-AU AAACUAUGCC GAC|UA|--- 3421 --gagau-ag gaa-a-acgu ca--(----- ugcu-----) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ----ugac-u u-cu-ccu-g ca-ccuu--- ---------- ----AUGA(- 3661 GAAA-)UCA- -AAGUC-UUU GGGU|-U|C- UGGGGGGAGU AU--GG-UC( --GCAA-)GG 3721 CUG-AAACUU -AAAG--GAA -UUG|AC-GG -AA-GGGCA- -CCAC-CAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --C-GU|-GG 4021 AGCCUGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--GAA ACUCACCAGG UC[cag-aca 4081 uagg-aagga uu-----gac aga(uugaua g-c)------ ucuuu----- cuu-gauu-c 4141 uauggg---- -]-------- |--------- ---------- ---------- ---------- 4201 ---------- ---|ug-gu- ggu-g-caug |gcc|gu-uc uua|guugg- u|gga(-gug 4261 a-)uuuguc- -ugg(uu-aa uu)ccguua- ac-gaacgag accuu-aa|- ---------- 4321 ---------- ---[ccu-gc uaaauag-ga u--caggaac (uucgu)--- ---------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- ---------- -guucuug-- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ----uauca- cu-------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------u cuuagagg]- --|------- ---------- gacu-uug-c -g-u(----- 5041 --gucua-)a cgca-a-gga aguu-ugagg caauaa--ca ggu------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----cug-ug a|ugcc|cuu 5221 a-g-a-uguu cugg-gcugc a-cgcgcgcu acacu--g-a ugcau----- ---------- 5281 ---------- -----[ccaa cgaguuu--- ---------- -----a---- ---------- 5341 ---------- ---------- ---------- ---------- ---------- ---------- 5401 -uaaccu-ug gcc(gaua-) ggucu----a gguaau-cuu gugagu]--- ---------- 5461 -------aug cau-c-g--- ugau-g-ggg auagauuau( ugcaauua)u uaaucuuc-A 5521 ACGAGG-AAU G--CCUAGUA G--CGC-AAG (-UCAGCAC- )GUUGC-G-C -CGAUUACG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUCC-U-A CC-GAU--ug ag-uguucc- 5641 ggu-gaau-- uau-ucgga- ccgu-uuug- uggc-gcg-- ---------- ---------- 5701 -------(uu cg----)--- ---------- ---------- ---------- -----ugc-- 5761 c-cgaa-aug -ggaa-|guu -uugugaacc uu-aac-a-c uuag-AGGAA GG-AGAA-G- 5821 UCGUAACAAG GU~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5881 ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS T.gondii.P 5903 bp RNA RNA 11-JAN-191 DEFINITION Toxoplasma gondii. ACCESSION No information KEYWORDS No information. SOURCE Toxoplasma gondii. ORGANISM Toxoplasma gondii. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: X75473+corrections BASE COUNT 470 a 362 c 458 g 503 t 4110 others ORIGIN 1 |~~~~~~~~~ ~~~~~AACCU GGU(UGA)UC CU|GCCAGU- A-GUCA-UAU --GCUUGUCU 61 UAAA|-GAUU AA-GCCAUGC A-UGUCU-AA GU|------- |-------(- ---)[----- 121 ---------- --------au aagcuu--uu ---------- -auac-ggc- uaa]------ 181 -----|---A CU|G-CGAA- UGGCU-CAUU AAAA-cagu- uau-aguu-- ----uauuug 241 augg<----- ---------- ---------- ---------- ---------- ---ucuuuac 301 u>ACAUGG-A UAACCGUGG( -U-AAUU)CU AUGGC-UAA- UACAUG---- ----(----) 361 ---------- -------(-- --)--|---- -- -ggaucauuc -aa|guuucu ga|--CCU-A UCA--GCUUU C-GACGGUA- 1141 CU(-GUAUUG G)ACU-ACCG U-|GGCAG-U GAC|GGGU-A A-CGGG|GAA -U-(UAGG-) 1201 GUU-CGAUU- CCG|GAGAGG G-AGCC(U-G AGAAAC)GGC UACC-ACAUC (UAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GC- AAAUU-ACCC -AAUCCU-G( ---auu--)C 1321 AGGG-A-GGU -|A|GUGACA AGAA-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AA CAACACUGG- -AAAU(---- ---uuc-)AU UU-CU-AGUG A-UUGGAAU- 1501 ------GAUA ----GGAAUC -CAAA--CCC C-----UU-U C-AGA-GUAA C---->AAUU 1561 GGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCCAA 1621 U-AGCGUA|U AUUAA--AGU UGUUG-CAG| UUA--AAAAG CUCGUAGUUG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 gauuuc-ugc u-ggaa-gca gccagu--cc gc-ccucagg ggugug-cac ---------- 1801 ---------- -----uu-g- gugaau-ucu -agcauccuu cuggau-uuc uc-------- 1861 cacacuucau u-guguggag uuuuuuccag gac------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- --UUUUACUU UG-AGAA--A 2461 AUUAGAGUGU UU-CA-AG-C AGGCuu---- ---------- ---------- ---------- 2521 -------guc GCCU-U--GA AUACUG-CAG CAUGGAA|UA -AUAAGA-UA -GGAUuUCGG 2581 cc-------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ---C|-UAUU 2821 -UU-GUUGGU -UU-CU---- --ag----ga CUG-AA-GUA A--UGAUUAA UA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGA|CGGU ---------- 3001 --UGGGGGCA UU|--CGUAU UUAACUG-UC -AGAG(GU-G AAA---)UUC U-UAGA-U-U 3061 UGUUA-AAG- A-CGAACU-A CUGC(-GAAA )--GC|A--- UUUGCC-AA| AG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUG ---UUUUCAU -UAA-U|CA- A-GAACGAAA 3301 GUUAGGGGC- UCGAAGACG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CGUAG|UCU UA--ACC-AU AAACUAUGCC GAC|UA|--- 3421 --gagau-ag gaa-a-acgu ca--(----- ugcu-----) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ----ugac-u u-cu-ccu-g ca-ccuu--- ---------- ----AUGA(- 3661 GAAA-)CCA- -AAGUC-UUU GGGU|-U|C- UGGGGGGAGU AU--GG-UC( --GCAA-)GG 3721 CUG-AAACUU -AAAG--GAA -UUG|AC-GG -AA-GGGCA- -CCAC-CAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --C-GU|-GG 4021 AGCCUGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--GAA ACUCACCAGG UC[cag-aca 4081 uagg-aagga uu-----gac aga(uugaua g-c)------ ucuuu----- cuu-gauu-c 4141 uauggg---- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU-G-CAUG |GCC|GU-UC UUA|GUUGG- U|GGA(-GUG 4261 A-)UUUGUC- -UGG(UU-AA UU)CCGUUA- AC-GAACGAG ACCUU-AA|- ---------- 4321 ------(--- --)[CCU-GC UAAAUAG-ga u--caggaac (uucgu)--- ---------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- ---------- -guucuug-- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ----uauca- CU-------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------U CUUAGAGG]- --|------- ---------- GACU-Uug-c -g-u(----- 5041 --gucua-)a cgca-A-GGA AGUU-UGAGG CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UG A|UGCC|CUU 5221 A-G-A-UGUU CUGG-GCUGC A-CGCGCGCU ACACU--G-A UGCAU----- ---------- 5281 ---(------ ----)[ccaa cgaguuu--- ---------- -----a---- ---------- 5341 ---------- ---------( -----)---- ---------- ---------- ---------- 5401 -uaaccu-ug gcc(gaua-) ggucu----a gguaau-cuu gugagu]--- ---------- 5461 -------aug cau-c-g--- UGAU-G-GGG AUAGAUUAU( UGCAAUUA)U UAAUCUUC-A 5521 ACGAGG-AAU G--CCUAGUA GG-CGC-AAG (-UCAGCAC- )GUUGC-G-C -CGAUUACG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUCC-U-A CC-GAU--UG AG-UGUucc- 5641 ggu-gaau-- uau-ucgga- ccgu-uuug- uggc-gcg-- ---------- ---------- 5701 -------(uu cg----)--- ---------- ---------- ---------- -----ugc-- 5761 c-cgaa-aug -ggaa-|guu -uugugaacc uu-aac-a-c uuag-AGGAA GG-AGAA-G- 5821 UCGUAACAAG GU-------- -----U-U-C CGUAGG(UGA A)CCUGCGGA AGGAUCA--- 5881 --UUC~~~~~ ~~~~~~~~|| ||| // LOCUS T.gondii.R 5903 bp RNA RNA 11-JAN-191 DEFINITION Toxoplasma gondii (strain RH). ACCESSION No information KEYWORDS No information. SOURCE Toxoplasma gondii (strain RH). ORGANISM Toxoplasma gondii (strain RH). REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: M97703 LOCUS TOXRRNA 1795 bp ds-DNA INV 24-AUG-1993 DEFINITION Toxoplasma gondii ribosomal RNA small subunit gene sequence. ACCESSION M97703 KEYWORDS ribosomal RNA; ribosomal RNA small subunit. SOURCE Toxoplasma gondii (strain RH) (library: lambda 2001) tachyzoite DNA. ORGANISM Toxoplasma gondii Eukaryota; Animalia; Protozoa; Apicomplexa; Sporozoasida; Coccidiasina; Eucocciodiorida; Eimeriorina; Sarcocystidae. REFERENCE 1 (sites) AUTHORS Johnson,A.M., Murray,P.J., Illana,S. and Baverstock,P.J. TITLE Rapid nucleotide sequence analysis of the small subunit ribosomal RNA of Toxoplasma gondii: Evolutionary implications for the Apicomplexa JOURNAL Mol. Biochem. Parasitol. 25, 239-246 (1987) STANDARD full automatic REFERENCE 2 (sites) AUTHORS Guay,J.-M., Huot,A., Gagnon,S., Tremblay,A. and Levesque,R.C. TITLE Physical and genetic mapping of cloned ribosomal DNA from Toxoplasma gondii: Primary and secondary structure of the 5S gene JOURNAL Gene 114, 165-171 (1992) STANDARD full automatic REFERENCE 3 (bases 1 to 1795) AUTHORS Gagnon,S., Levesque,R.C., Sogin,M.L. and Gjadhar,A.A. TITLE Molecular cloning, complete sequence of the small subunit ribosomal RNA coding region and phylogeny of Toxoplasma gondii JOURNAL Mol. Biochem. Parasitol. 60, 145-148 (1993) STANDARD full automatic FEATURES Location/Qualifiers rRNA 1..1795 /product="ribosomal RNA small subunit" source 1..1795 /organism="Toxoplasma gondii" /strain="RH" /cell_line="VERO" /dev_stage="tachyzoite" /germline /sequenced_mol="DNA" /tissue_lib="lambda 2001" BASE COUNT 470 a 362 c 459 g 503 t 1 others ORIGIN BASE COUNT 470 a 362 c 459 g 503 t 4109 others ORIGIN 1 |~~~~~~~~~ ~~~~~AACCU GGU(UGA)UC CU|GCCAGU- A-GUCA-UAU --GCUUGUCU 61 UAAA|-GAUU AA-GCCAUGC A-UGUCU-AA GU|------- |-------(- ---)[----- 121 ---------- --------au aagcuuu--- ---------- uauac-ggc- uaa]------ 181 -----|---A CU|G-CGAA- UGGCU-CAUU AAAA-cagu- uau-aguu-- ----uauuug 241 augg<----- ---------- ---------- ---------- ---------- ---ucuuuac 301 u>ACAUGG-A UAACCGUGG( -U-AAUU)CU AUGGC-UAA- UACAUG---- ---------- 361 ---------- ---------- ---------- -- -ggaucauuc -aa|guuucu ga|--CCU-A UCA--GCUUU C-GACGGUA- 1141 CU(-GUAUUG G)ACU-ACCG U-|GGCAG-U GAC|GGGU-A A-CGGG|GAA -U-(UAGG-) 1201 GUU-CGAUU- CCG|GAGAGG G-AGCC(U-G AGAAAC)GGC UACC-ACAUC (UAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GC- AAAUU-ACCC -AAUCCU-G( ---auu--)C 1321 AGGG-A-GGU -|A|GUGACA AGAA-AU--- ---------- ---------- ---------- 1381 -----|---- ---------- ---------- ---------- ---------- ---------- 1441 --------AA CAACACUGG- -AAAU(---- ---uuc-)AU UU-CU-AGUG A-UUGGAAU- 1501 ------GAUA ----GGAAUC -CAAA--CCC C-----UU-U C-AGA-GUAA C---->AAUU 1561 GGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCCAA 1621 U-AGCGUA|U AUUAA--AGU UGUUG-CAG| UUA--AAAAG CUCGUAGUUG |--------- 1681 ---------- ---------- ---------- ---------- ---------- -|-------< 1741 gauuucugcu g-gaagcagc caguccgccc ucaggggugu gcacuu-ggu gaauucuagc 1801 au-cc---uu cu-ggau-uu cuccacacuu c----auugu guggaguuuu uuccaggac- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- --UUUUACUU UG-AGAA--A 2461 AUUAGAGUGU UU-CA-AG-C AGGCuu---- ---------- ---------- ---------- 2521 -------guc GCCU-U--GA AUACUG-CAG CAUGGAA|UA -AUAAGA-UA -GGAUuUCGG 2581 cc-------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ---c|-UAUU 2821 -UU-GUUGGU -UU-CU---- --ag----ga CUG-AA-GUA A--UGAUUAA UA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGA|CGGU ---------- 3001 --UGGGGGCA UU|--CGUAU UUAACUG-UC -AGAG(GU-G AAA---)UUC U-UAGA-U-U 3061 UGUUA-AAG- A-CGAACU-A CUGC(-GAAA )--GC|A--- UUUGCC-AA| AG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUG ---UUUUCAU -UAA-U|CA- A-GAACGAAA 3301 GUUAGGGGC- UCGAAGACG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CGUAG|UCU UA--ACC-AU AAACUAUGCC GAC|UA|--- 3421 --Gagau-ag gaa-a-acgu ca--(----- ugcu-----) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ----ugac-u u-cu-ccu-g ca-cCuu--- ---------- ----AUGA(- 3661 GAAA-)UCa- -AAGUC-UUU GGGU|-U|C- UGGGGGGAGU AU--GG-UC( --GCAA-)GG 3721 CUG-AAACUU -AAAG--GAA -UUG|AC-GG -AA-GGGCA- -CCAC-CAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --C-GU|-GG 4021 AGCCUGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--GAA ACUCACCAGG UC[cag-aca 4081 uagg-aagga uu-----gac aga(uugaua g-c)------ ucuuu----- cuu-gauu-c 4141 uauggg---- -]-------- |--------- ---------- ---------- ---------- 4201 ---------- ---|UG-GU- GGU-G-CAUG |GCC|GU-UC UUA|GUUGG- U|GGA(-GUG 4261 A-)UUUGUC- -UGG(UU-AA UU)CCGUUA- AC-GAACGAG ACCUU-AA|- ---------- 4321 ---------- ---[CCU-GC UAAAUAG-ga u--caggaac (uucgu)--- ---------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- ---------- -guucuug-- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ----uauca- CU-------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------U CUUAGAGG]- --|------- ---------- GACU-Uug-c -g-u(----- 5041 --gucua-)a cgca-A-GGA AGUU-UGAGG CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UG A|UGCC|CUU 5221 A-G-A-UGUU CUGG-GCCGC A-CGCGCGCU ACACU--G-A UGCAU----- ---------- 5281 ---------- -----[ccaa cgaguuu--- ---------- ---------- ---------- 5341 ---------- ---------- ---------- ---------- ---------- ---------- 5401 auaaccu-ug gcc(gaua-) ggucu----a gguaaucuu- gugagu]--- ---------- 5461 -------AUG CAU-C-G--- UGAU-G-GGG AUAGAUUAU( UGCAAUUA)U UAAUCUUC-A 5521 ACGAGG-AAU G--CCUAGUA GG-CGC-AAG (-UCAGCAG- )CUUGC-G-C -CGAUUACG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUCC-U-A CC-GAU--UG AG-UGUUcc- 5641 ggu-gaau-- uau-ucgga- ccgu-uuug- uggc-gcg-- ---------- ---------- 5701 -------(uu cg----)--- ---------- ---------- ---------- -----ugc-- 5761 c-cgaa-aug -ggaa-|guu -uugugaacc uu-AAC-A-C UUAG-AGGAA GG-AGAA-G- 5821 UCGUAACAAG GU-------- -----U-U-C CGUAGG(UGA A)CCUGCGGA AGGAUCA--- 5881 --UUCA~~~~ ~~~~~~~~|| ||| // LOCUS T.gondii.s 5903 bp RNA RNA 11-JAN-191 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: X75430 BASE COUNT 469 a 361 c 459 g 504 t 4110 others ORIGIN 1 |~~~~~~~~~ ~~~~~AACCU GGU(UGA)UC CU|GCCAGU- A-GUCA-UAU --GCUUGUCU 61 UAAA|-GAUU AA-GCCAUGC A-UGUCU-AA GU|------- |-------(- ---)[----- 121 ---------- --------au aagcuu--uu ---------- -auac-ggc- uaa]------ 181 -----|---A CU|G-CGAA- UGGCU-CAUU AAAA-cagu- uau-aguu-- ----uauuug 241 augg<----- ---------- ---------- ---------- ---------- ---ucuuuac 301 u>ACAUGG-A UAACCGUGG( -U-AAUU)CU AUGGC-UAA- UACAUG---- ----(----) 361 ---------- -------(-- --)--|---- -- -ggaucauuc -aa|guuucu ga|--CCU-A UCA--GCUUU C-GACGGUA- 1141 CU(-GUAUUG G)ACU-ACCG U-|GGCAG-U GAC|GGGU-A A-CGGG|GAA -U-(UAGG-) 1201 GUU-CGAUU- CCG|GAGAGG G-AGCC(U-G AGAAAC)GGC UACC-ACAUC (UAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-AC-GC- AAAUU-ACCC -AAUCCU-G( ---auu--)C 1321 AGGG-A-GGU -|A|GUGACA AGAA-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AA CAACACUGG- -AAAU(---- ---uuc-)AU UU-CU-AGUG A-UUGGAAU- 1501 ------GAUA ----GGAAUC -CAAA--CCC C-----UU-U C-AGA-GUAA C---->AAUU 1561 GGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCCAA 1621 U-AGCGUA|U AUUAA--AGU UGUUG-CAG| UUA--AAAAG CUCGUAGUUG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 gauuuc-ugc u-ggaa-gca gccagu--cc gc-ccucagg ggugug-cac ---------- 1801 ---------- -----uu-g- gugagu-ucu -agcauccuu cuggau-uuc uc-------- 1861 cacacuucau u-guguggag uuuuuuccag gac------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- --UUUUACUU UG-AGAA--A 2461 AUUAGAGUGU UU-CA-AG-C AGGCuu---- ---------- ---------- ---------- 2521 -------guc GCCU-U--GA AUACUG-CAG CAUGGAA|UA -AUAAGA-UA -GGAUuUCGG 2581 cc-------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ---C|-UAUU 2821 -UU-GUUGGU -UU-CU---- --ag----ga CUG-AA-GUA A--UGAUUAA UA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGA|CGGU ---------- 3001 --UGGGGGCA UU|--CGUAU UUAACUG-UC -AGAG(GU-G AAA---)UUC U-UAGA-U-U 3061 UGUUA-AAG- A-CGAACU-A CUGC(-GAAA )--GC|A--- UUUGCC-AA| AG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUG ---UUUUCAU -UAA-U|CA- A-GAACGAAA 3301 GUUAGGGGC- UCGAAGACG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CGUAG|UCU UA--ACC-AU AAACUAUGCC GAC|UA|--- 3421 --gagau-ag gaa-a-acgu ca--(----- ugcu-----) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ----ugac-u u-cu-ccu-g ca-ccuu--- ---------- ----AUGA(- 3661 GAAA-)UCA- -AAGUC-UUU GGGU|-U|C- UGGGGGGAGU AU--GG-UC( --GCAA-)GG 3721 CUG-AAACUU -AAAG--GAA -UUG|AC-GG -AA-GGGCA- -CCAC-CAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --C-GU|-GG 4021 AGCCUGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--GAA ACUCACCAGG UC[cgg-aca 4081 uagg-aagga uu-----gac aga(uugaua g-c)------ ucuuu----- cuu-gauu-c 4141 uauggg---- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU-G-CAUG |GCC|GU-UC UUA|GUUGG- U|GGA(-GUG 4261 A-)UUUGUC- -UGG(UU-AA UU)CCGUUA- AC-GAACGAG ACCUU-AA|- ---------- 4321 ------(--- --)[CCU-GC UAAAUAG-ga u--caggaac (uucgu)--- ---------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- ---------- -guucuug-- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ----uauca- CU-------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------U CUUAGAGG]- --|------- ---------- GACU-Uug-c -g-u(----- 5041 --gucua-)a cgca-A-GGA AGUU-UGAGG CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UG A|UGCC|CUU 5221 A-G-A-UGUU CUGG-GCUGC A-CGCGCGCU ACACU--G-A UGCAU----- ---------- 5281 ---(------ ----)[ccaa cgaguuu--- ---------- -----a---- ---------- 5341 ---------- ---------( -----)---- ---------- ---------- ---------- 5401 -uaaccu-ug gcc(gaua-) ggucu----a gguaau-cuu gugagu]--- ---------- 5461 -------aug cau-c-g--- UGAU-G-GGG AUAGAUUAU( UGCAAUUA)U UAAUCUUC-A 5521 ACGAGG-AAU G--CCUAGUA GG-CGC-AAG (-UCAGCAC- )GUUGC-G-C -CGAUUACG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUCC-U-A CC-GAU--UG AG-UGUucc- 5641 ggu-gaau-- uau-ucgga- ccgu-uuug- uggc-gcg-- ---------- ---------- 5701 -------(uu cg----)--- ---------- ---------- ---------- -----ugc-- 5761 c-cgaa-aug -ggaa-|guu -uugugaacc uu-aac-a-c uuag-AGGAA GG-AGAA-G- 5821 UCGUAACAAG GU-------- -----U-U-C CGUAGG(UGA A)CCUGCGGA AGGAUCA--- 5881 --UUC~~~~~ ~~~~~~~~|| ||| // LOCUS (5)-Haemos 5903 bp RNA RNA 13-JAN-1999 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: DIVIDER BASE COUNT 0 a 0 c 0 g 0 t 5903 others ORIGIN 1 |......... .......... .......... .......... .......... .......... 61 .......... .......... .......... .......... .......... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......... .......... .......... .......... 241 .......... .......... .......... .......... .......... .......... 301 .......... .......... .......... .......... .......... .......... 361 .......... .......... .......... .......... .......... .......... 421 .......... .......... .......... .......... .......... .......... 481 .......... .......... .......... .......... .......... .......... 541 .......... .......... .......... .......... .......... .......... 601 .......... .......... .......... .......... .......... .......... 661 .......... .......... .......... .......... .......... .......... 721 .......... .......... .......... .......... .......... .......... 781 .......... .......... .......... .......... .......... .......... 841 .......... .......... .......... .......... .......... .......... 901 .......... .......... .......... .......... .......... .......... 961 .......... .......... .......... .......... .......... .......... 1021 .......... .......... .......... .......... .......... .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .......... .......... .......... .......... .......... 1201 .......... .......... .......... .......... .......... .......... 1261 .......... .......... .......... .......... .......... .......... 1321 .......... .......... .......... .......... .......... .......... 1381 .......... .......... .......... .......... .......... .......... 1441 .......... .......... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .....>.... 1561 .......... .......... .......... .......... .......... ..-|...... 1621 .......... .......... .......... .......... .......... .......... 1681 .......... .......... .......... .......... .......... .......... 1741 .......... .......... .......... .......... .......... .......... 1801 .......... .......... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .......... .......... 1921 .......... .......... .......... .......... .......... .......... 1981 .......... .......... .......... .......... .......... .......... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... .......... .......... .......... .......... .......... 2161 .......... .......... .......... .......... .......... .......... 2221 .......... .......... .......... .......... .......... .......... 2281 .......... .......... .......... .......... .......... .......... 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... .......... 2701 .......... .......... .......... .......... .......... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... .......... 2881 .......... .......... .......... .......... .......... .......... 2941 .......... .......... .......... .......... .......... .......... 3001 .......... .......... .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .......... .......... 3181 .......... .......... .......... .......... .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .......... .......... .......... 3361 .......... .......... .......... .......... .......... .......... 3421 .......... .......... .......... .......... .......... .......... 3481 .......... .......... .......... .......... .......... .......... 3541 .......... .......... .......... .......... .......... .......... 3601 .......... .......... .......... .......... .......... .......... 3661 .......... .......... .......... .......... .......... .......... 3721 .......... .......... .......... .......... .......... .......... 3781 .......... .......... .......... .......... .......... .......... 3841 .......... .......... .......... .......... .......... .......... 3901 .......... .......... .......... .......... .......... .......... 3961 .......... .......... .......... .......... .......... .......... 4021 .......... .......... .......... .......... .......... .......... 4081 .......... .......... .......... .......... .......... .......... 4141 .......... .]........ .......... .......... .......... .......... 4201 .......... .......... .......... .......... .......... .......... 4261 .......... .......... .......... .......... .......... .......... 4321 .......... .......... .......... .......... .......... .......... 4381 .......... .......... .......... .......... .......... .......... 4441 .......... .......... .......... .......... .......... .......... 4501 .......... .......... .......... .......... .......... .......... 4561 .......... .......... .......... .......... .......... .......... 4621 .......... .......... .......... .......... .......... .......... 4681 .......... .......... .......... .......... .......... .......... 4741 .......... .......... .......... .......... .......... .......... 4801 .......... .......... .......... .......... .......... .......... 4861 .......... .......... .......... .......... .......... .......... 4921 .......... .......... .......... .......... .......... .......... 4981 .......... .......... .......... .......... .......... .......... 5041 .......... .......... .......... .......... .......... .......... 5101 .......... .......... .......... .......... .......... .......... 5161 .......... .......... .......... .......... .......... .......... 5221 .......... .......... .......... .......... .......... .......... 5281 .......... .......... .......... .......... .......... .......... 5341 .......... .......... .......... .......... .......... .......... 5401 .......... .......... .......... .......... .......... .......... 5461 .......... .......... .......... .......... .......... .......... 5521 .......... .......... .......... .-........ .......... .......... 5581 .......... .......... .......... .......... .......... .......... 5641 .......... .......... .......... .......... .......... .......... 5701 .......... .......... .......... .......... .......... .......... 5761 .......... .......... .......... .......... .......... .......... 5821 .......... .......... .......... .......... .......... .......... 5881 .......... ........|| ||| // LOCUS +++A 5903 bp RNA RNA 25-JAN-1995 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: DIVIDER BASE COUNT 0 a 0 c 0 g 0 t 5903 others ORIGIN 1 |......... .......... .......... .......... .-........ .......... 61 .......... .......... .-........ ..|....... |......... .......... 121 .......... .......... .......... .......... .....-.... .......... 181 .......... ..|....... .......... .......... .......... .......... 241 .......... .......... .......... .......... .......... .......... 301 .......... .......... .......... .......... .......... .......... 361 .......... .......... .......... .......... .......... .......... 421 .......... .......... .......... .......... .......... .......... 481 .......... .......... .......... .......... .......... .......... 541 .......... .......... .......... .......... .......... .......... 601 .......... .......... .......... .......... .......... .......... 661 .......... .......... .......... .......... .......... .......... 721 .......... .......... .......... .......... .......... .......... 781 .......... .......... .......... .......... .......... .......... 841 .......... .......... .......... .......... .......... .......... 901 .......... .......... .......... .......... .......... .......... 961 .......... .......... .......... .......... .......... .......... 1021 .......... .......... .......... .......... .......... .......... 1081 .......... .......... ...|...... .......... .......... .-........ 1141 .......... .......... .......... ...|...... .......... .......... 1201 .......... .......... .......... .......... ....-..... .....-.... 1261 .......... .........| .......... .......... .......... .......... 1321 .......... .|........ ....-..... .......... .......... .......... 1381 .....|.... .......... .......... .......... .......... .......... 1441 .......... .......... .......... .......... .......... .......... 1501 .......... .......... .......... .-----.... .......... .....>.... 1561 .......... .......... .......... .......... .......... ..-|...... 1621 ........|. .......... .........| .......... .......... .......... 1681 .......... .......... .......... .......... .......... .|........ 1741 .......... .-........ .......... .......... ......-... .......... 1801 ..-....... ..-....-.. .......... .......... .......... .......... 1861 .......... .-........ .......... .......... .......... .......... 1921 .......... .......... .......... .......... .......... .......... 1981 .......... .......... .......... .......... .......... .......... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... .......... .......... .......... .......... .......... 2161 .......... .......... .......... .......... .......... .......... 2221 .......... .......... .......... .......... .......... .......... 2281 .......... .......... .......... .......... .......... .......... 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... ....-..... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... .......... 2701 .......... .......... .......... .......... .......... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ..---..... 2881 .......... .......... .......... .......... .......... .......... 2941 .......... .......... .......... .......... .....|.... .......... 3001 .......... ...--..... .......... .......... .......... .......... 3061 .......... .......... .......... .....|.... .........| ..-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------... .......... ....-.|... .......... 3301 .......... .......... ....------ ---------- ---------- ---------- 3361 ---------. .......... .......... .......... .......... ...|...... 3421 .......... .......... .......... .......... .......... .......... 3481 .......... .......... .......... .......... .......... .......... 3541 .......... .......... .......... .......... .......... .......... 3601 .......... .......... .......... .......... .......... .......... 3661 .......... .......... .......|.. .......... .......... .......... 3721 .......... -......... ....|..... .......... .......... ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --....|... 4021 ........|. .......... .......-.. .......... .......... .......... 4081 .......... ..-----... .......... .-..--.... .....----- ...-...... 4141 .......... .]........ |......... .......... .......... .......... 4201 .......... ...|...... .......... ....|..... .........- .......... 4261 .-........ .......... .......... ..-....... .......... .......... 4321 .......... .......... .......... .......... .......... .......... 4381 .......... .......... .......... ...-...... .......... .......... 4441 --........ .......... .......... .......... .......... .......... 4501 .......... .......... .......... .......... .......... .......... 4561 .......... .......... .......... .......... .......... .......... 4621 .......... .......... .......... .......... .......... .......... 4681 .......... .......... .......... .......... .......... .......... 4741 .......... .......... .......... .......... .......... .......... 4801 .......... .......... .......... .......... .......... .......... 4861 .......... .......... .......... .......... .......... .......... 4921 .......... .......... .......... .......... .......... .......... 4981 .......... .......... .......... .......... .......... .......... 5041 .......... .......... .......... .......... ...------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ---....... .|....|... 5221 .......... .......... .......... .......... .......... .......... 5281 ....-..... .......... .......... .......... .......... .......... 5341 .......... .......... .......... .......... .......... .......... 5401 .......... .......... .......... .......... .......... .......... 5461 .......... .....-..-- ....-.-... .......... .......... .......... 5521 .......... .-........ .......... .-........ .......... .......... 5581 .......... ..|....... .......... .......... .......... .......... 5641 ...-.....- .......... .......... .......... .......... .......... 5701 ......-... .......... .......... .......... .......... ........-. 5761 .......... ......|... .......... .......... .......... .......... 5821 .......... .......... .......... .......... .......... .......... 5881 .......... ........|| ||| // LOCUS P.berg.A 5903 bp RNA RNA 03-JAN-1986 DEFINITION Plasmodium berghei. ACCESSION No information KEYWORDS No information. SOURCE Plasmodium berghei. ORGANISM Plasmodium berghei. REFERENCE 1 (bases 1 to 2303) AUTHORS No information JOURNAL Sept 3 1986 STANDARD No information COMMENTS Organism information Culture collection: ? Sequence information (bases 1 to 5903) Corresponding GenBank entry: M14599 Phylo:Eukaryotes,Protozoan BASE COUNT 617 a 330 c 434 g 678 t 3844 others ORIGIN 1 |~~~~~~~~~ ~~~~~AACCU GGU(UGA)UC UU|GCCAGU- A-GUCA-UAU --GCUUGUCU 61 CAAA|-GAUU AA-GCCAUGC A-AGUGA-AA GU|------- |--------- ----[----- 121 ---------- --------au augcauauuu ---------- -uaua-ugua gaa]------ 181 -----|---A CU|G-CGAA- CGGCU-CAUU AAAA-cagu- uau-aauc-- ----uacuug 241 acau<----- ---------- ---------- ---------- ---------- -----uuuau 301 u>AUAAGG-A UAACUACGG( -A-AAAG)CU GUAGC-UAA- UACUUG---- ---------- 361 ---------- ---------- ---------- -- -guaucaauc -ga|guuucu ga|--CCU-A UCA--GCUUU U-GAUGUUA- 1141 GG(-GUAUUG G)CCU-AACA U-|GGCUA-U GAC|GGGU-A A-CGGG|GAA -U-(UAGA-) 1201 GUU-CGAUU- CCG|GAGAGG G-AGCC(U-G AGAAAU)AGC UACC-ACAUC (UAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GU- AAAUU-ACCC -AAUUCU-A( ---aau--)A 1321 AGAG-A-GGU -|A|GUGACA AGAA-AU--- ---------- ---------- ---------- 1381 -----|---- ---------- ---------- ---------- ---------- ---------- 1441 --------AA CAAUAUAAG- -GCCA(---- --aauuu)UG GU-UU-UAUA A-UUGGAAU- 1501 ------GAUG ----GGAAUU -UAAA--ACC U-----UC-C C-A-A-AAAU C---->AAUU 1561 GGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCCAA 1621 U-AGCGUA|U AUUAA--AAU UGUUG-CAG| UUA--AAACG CUCGUAGUUG |--------- 1681 ---------- ---------- ---------- ---------- ---------- -|-------< 1741 aacuucaagg g-uauuauua uuuuaag-ua acuc------ acuugg-cga ---------- 1801 ---------- ------g-a- aucuug-g-- -cuccgccuc gauauc-uuc au-------- 1861 --gccuuguu g-uaguucuu u-uaauuaca --gacccuuu ----gagag- cccaaugauu 1921 uaucacu--- ---------- ------gggu uucu------ ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- --CGUUACUU UG-AGUA--A 2461 AUUAGAGUGU UC-AA-AG-C AAACaguua- ---------- ---------- ------aagc 2521 g--uuuucgC GUU--U--GA AUACUA-UAG CAUGGAA|UA -ACAAAA-UU -GAACaAGUC 2581 aa-------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ------a-uu uuuu|guu-c 2821 -uu-uuuucu -ua-uu---- --------uu GGC-UUaGUU A--CGAUUAA UA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGAG|UAGC U--------- 3001 --UGGGGGCA UU|--UGUAU UCAGAUG-UC -AGAG(GU-G AAA---)UUC U-UAGA-U-U 3061 UUCUG-GAG- A-CAAACA-A CUGC(-GAAA )--GC|A--- UUUGCC-UA| AA-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUA ---CUUCCAU -UAA-U|CA- A-GAACGAAA 3301 GUUAAGGGA- GUGAAGACG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CGUAA|UCU UA--ACC-AU AAACUAUGCC GAC|UA|--- 3421 --GGUUU-UG GAU-G-A--- ----(----- ---------) aaauuuu--- -----uaaau 3481 a-agauuu-c c----(cuuc --)----ggg gau-uucuua --gauu-gcu ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------U C-CU-UCA-G -U-ACCuu-- ---------- ----auGA(- 3661 GAAA-)UCa- -AAGUC-uuu gGGU|-U|C- UGGGGCGAGU AU--UC-GC( --GCAA-)GC 3721 GAG-AAAGUU -AAAA--GAA -UUG|AC-GG -AA-GGGCA- -CCAC-CAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --C-GU|-GG 4021 AGCUUGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--GAA ACUCACUAGU UU[aag-aca 4081 agag-uagga uu-----gac aga(uuaaua g-c)------ ucuuu----- cuu-gauu-u 4141 cuugga---- -]-------- |--------- ---------- ---------- ---------- 4201 ---------- ---|UG-GU- GAU-G-CAUG |GCC|GU-UU UUA|GUUCG- U|GAA(UAUG 4261 A-)UUUGUC- -UGG(UU-AA UU)CCGAUA- AC-GAACGAG AUCUU-AA|- ---------- 4321 ---------- ---[CCU-GC UAAUUAGcgg cgaguacucu auauccuuua uugg-gagau 4381 ugguuuugac guuuaug--- ---------- --------ug ggcauauuga uuaaucaauu 4441 --gguuuacc uuuugcucuu uuucauuaug a--------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------u ucuugcguuu acgacaugcc 4621 uuuuuucuag uaaggaugu- ----auucgc uuuauu---- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- -----uaaug CU-------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------U CUUAGAGG]- --|------- ---------- AACG-AUG-U -G-U(----- 5041 --GUCUA-)A CACA-A-GGA AGUU-UAAGG CAACAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UG A|UGUC|CUU 5221 A-G-A-UAUA CUAG-GCUGC A-CGCGUGCU ACACU--G-A UAUGU----- ---------- 5281 ---------- -----[aaaa cgagugc--- ---------- -----uuaaa uu----uaua 5341 u-cugugcuu aggu----g( -uuaa)a--- -gccuauguu ucaguauaua ---------u 5401 uuuuccu-cc acu(gaaa-) agugu----a gguaaucuuu aucaau]--- ---------- 5461 -------ACA UAU-C-G--- UGAU-G-GGG AUAGAUUAU( UGCAAUUA)U UAAUCUUG-A 5521 ACGAGG-AAU G--CCUAGUA AG-CAU-GAU (-UCAUCAG- )AUUGU-G-C -UGACUACG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUCC-U-A CC-GAU--UG AA-AGAUau- 5641 gau-gaau-- ugu-uugga- caag-aaaa- uaga-aau-- ---------- ---------- 5701 -------(uu u-----)--- ---------- ---------- ---------- --au-uuu-- 5761 uauuuu-uuu -ggaa-|gga -ccguaaauc cu-AUC-U-U UUAA-AGGAA GG-AGAA-G- 5821 UCGUAACAAG GU-------- -----U-U-C CGUAGG(UGA A)CCUGCGGA AGGAUCA--- 5881 --UUA~~~~~ ~~~~~~~~|| ||| // LOCUS P.cyno.A.1 5903 bp RNA RNA 11-JAN-191 DEFINITION Plasmodium cynomolgi (asexual stage). ACCESSION No information KEYWORDS No information. SOURCE Plasmodium cynomolgi (asexual stage). ORGANISM Plasmodium cynomolgi (asexual stage). REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: L08241 LOCUS PFARRNASSA 2312 bp ds-DNA INV 28-JAN-1993 DEFINITION Plasmodium cynomolgi small subunit rRNA, asexual stage ACCESSION L08241 KEYWORDS ribosomal RNA small subunit; stage-specific transcript. SOURCE Plasmodium cynomolgi (strain Ceylon) (library: lambda gt11 library of Corredor & Enea) asexual DNA. ORGANISM Plasmodium cynomolgi Eukaryota; Animalia; Protozoa; Apicomplexa; Sporozoa; Coccidia; Eucoccidiida; Haemosporina; Plasmodiidae. REFERENCE 1 (bases 1 to 2312) AUTHORS Corredor,V. and Enea,V. TITLE The small subunit ribosomal RNA genes in Plasmodium cynomolgi JOURNAL Unpublished (1993) STANDARD full automatic FEATURES Location/Qualifiers rRNA 199..2270 /product="ribosomal RNA small subunit" /note="putative" BASE COUNT 716 a 368 c 484 g 744 t ORIGIN 198 bp 5' to the start of the mature rRNA BASE COUNT 622 a 342 c 444 g 664 t 3831 others ORIGIN 1 |~~~~~~~~~ ~~~~~AACCU GGU(UGA)UC UU|GCCAGU- A-GUCA-UAU --GCUUGUCU 61 CAAA|-GAUU AA-GCCAUGC A-AGUGA-AA GU|------- |--------- ----[----- 121 ---------- --------au augcauauuu ---------- -uaua-ugua gaa]------ 181 -----|---A CU|G-CGAA- CGGCU-CAUU AAAA-cagu- uau-aauc-- ----uacuug 241 acau<----- ---------- ---------- ---------- ---------- ---uuuuucu 301 u>AUAAGG-A UAACUACGG( -A-AAAG)CU GUAGC-UAA- UACUUG---- ---------- 361 ---------- ---------- ---------- -- -guaucaauc -ga|guuucu ga|--CCU-A UCA--GCUUU U-GAUGUUA- 1141 GG(-GUAUUG G)CCU-AACA U-|GGCUA-U GAC|GGGU-A A-CGGG|GAA -U-(UAGA-) 1201 GUU-CGAUU- CCG|GAGAGG G-AGCC(U-G AGAAAU)AGC UACC-ACAUC (UAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GU- AAAUU-ACCC -AAUUCU-A( ---aag--)A 1321 AGAG-A-GGU -|A|GUGACA AGAA-AU--- ---------- ---------- ---------- 1381 -----|---- ---------- ---------- ---------- ---------- ---------- 1441 --------AA CAAUACAAG- -GCCA(---- ---auc-)UG GC-UU-UGUA A-UUGGAAU- 1501 ------GAUG ----GGAAUU -UAAA--ACC U-----UC-C C-A-A-AACU C---->AAUU 1561 GGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCCAA 1621 U-AGCGUA|U AUUAA--AAU UGUUG-CAG| UUA--AAACG CUCGUAGUUG |--------- 1681 ---------- ---------- ---------- ---------- ---------- -|-------< 1741 aauuucaaag a-a-ucgaua uuuuaagcaa cgcuugu-ag cuuaau-cca ca--uaacug 1801 au-ac---ua c-----g-ua ucgacuu--- --------ug ugcgcauu-u ug-cuauuau 1861 -guguucuuu u-aauuaaaa ugauucucuu uua------- ----aggucu uucuuu---- 1921 ----ugcuuc g--gca---- ---uuugaag aucu------ ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- --UGUUACUU UG-AGUA--A 2461 AUUAGAGUGU UC-AA-AG-C AAACagaua- ---------- ---------- ------uagc 2521 au---ugcgC GUU--U--GA AUACUA-CAG CAUGGAA|UA -ACGAAA-UU -GAACaAGUC 2581 ag-------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- -----aa-uu u--u|guu-c 2821 -uu-uuuucu -ua-uu---- --------uu GGC-UUaGUU A--CGAUUAA UA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGAG|UAGC U--------- 3001 --UGGGGGCG UU|--UGUAU UCAGAUG-UC -AGAG(GU-G AAA---)UUC U-UAGA-U-U 3061 UUCUG-GAG- A-CAAACA-A CUGC(-GAAA )--GC|A--- UUUGCC-UA| AA-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUA ---CUUCCAU -UAA-U|CA- A-GAACGAAA 3301 GUUAAGGGA- GUGAAGACG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CGUAA|UCU UA--ACC-AU AAACUAUGCC GAC|UA|--- 3421 --GGCUU-UG GAU-G-A--- ----(----- ---------) aagauuuuaa aa---uaag- 3481 --agauuu-u cuc--(uucg --)--gaguu aau-cucuua --gauu-gcu ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------U C-CU-UCA-G -U-GCCuu-- ---------- ----auGA(- 3661 GAAA-)UCa- -AAGUC-uuu gGGU|-U|C- UGGGGCGAGU AU--UC-GC( --GCAA-)GC 3721 GAG-AAAGUU -AAAA--GAA -UUG|A--GG -AA-GGGCA- -CCAC-CAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --C-GU|-GG 4021 AGCUUGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--AAA ACUCACUAGU UU[aag-aca 4081 agag-uagga uu-----gac aga(uuaaua g-c)------ ucuuu----- cuu-gauu-u 4141 cuugga---- -]-------- |--------- ---------- ---------- ---------- 4201 ---------- ---|UG-GU- GAU-G-CAUG |GCC|GU-UU UUA|GUUCG- U|GAA(UAUG 4261 A-)UUUGUC- -UGG(UU-AA UU)CCGAUA- AC-GAACGAG AUCUU-AA|- ---------- 4321 ---------- ---[CCU-GC UAAUUAGcgg caaauacgau auauucuuau gugg-gauug 4381 aauacgguug auuu--gcuu ----auuuug aag-aa-aau auuggga-ug c(guaaa--- 4441 --)gug-ucc cuuuccc--- ---------- ---------- ---------- ---------- 4501 -----uuuuc uacuu-aauu u--------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- gc---uuauc auacuguuuc 4621 -uuuuucgcg uaagaaugu- ----auuugc uugauug--- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- -----uaaag CU-------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------U CUUAGAGG]- --|------- ---------- AACG-AUG-U -G-U(----- 5041 --GUCUA-)A CACA-A-GGA AGUU-UAAGG CAACAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UG A|UGUC|CUU 5221 A-G-A-UGAA CUAG-GCUGC A-CGCGUGCU ACACU--G-A UAUGU----- ---------- 5281 ---------- -----[auaa cgaguua--- ---------- -----cuaa- aau---uacg 5341 uuu------c ugcu-----( -ugcu)---- -ugcag---- ---uuucgua ---------c 5401 uuuuccu-cc acu(gaaa-) agugu----a gguaaucuuu aucaau]--- ---------- 5461 -------ACA UAU-C-G--- UGAU-G-GGG AUAGAUUAU( UGCAAUUA)U UAAUCUUG-A 5521 ACGAGG-AAU G--CCUAGUA AG-CAU-GAU (-UCAUCAG- )AUUGU-G-C -UGACUACG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUCC-U-A CC-GAU--UG AA-AGAUau- 5641 gau-gaau-- ugu-uugga- caag-aaga- aagg-ggau- ---------- ---------- 5701 -------(ua u-----)--- ---------- ---------- ---------- -auc-uuc-- 5761 -uuuuu-ucu -ggaa-|aaa -ccguaaauc cu-AUC-U-U UUAA-AGGAA GG-AGAA-G- 5821 UCGUAACAAG GU-------- -----U-U-C CGUAGG(UGA A)CCUGCGGA AGGAUCA--- 5881 --UUA----- -------~|| ||| // LOCUS P.cyno.A.2 5903 bp RNA RNA 11-JAN-191 DEFINITION Plasmodium cynomolgi. ACCESSION No information KEYWORDS No information. SOURCE Plasmodium cynomolgi. ORGANISM Plasmodium cynomolgi. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: L07559 LOCUS PFARRXX 2047 bp ss-rRNA RNA 02-JUL-1993 DEFINITION Plasmodium cynomolgi rRNA sequence. ACCESSION L07559 KEYWORDS ribosomal RNA. SOURCE Plasmodium cynomolgi asexual rRNA. ORGANISM Plasmodium cynomolgi Eukaryota; Animalia; Protozoa; Apicomplexa; Sporozoasida; Coccidiasina; Eucoccidiida; Haemosporina; Plasmodiidae. REFERENCE 1 (bases 1 to 2047) AUTHORS Waters,A.P., Higgins,D.G. and McCutchan,T.F. TITLE Evolutionary Relatedness of Simian Models of Plasmodium JOURNAL Mol. Biol. Evol. (1993) In press STANDARD full automatic FEATURES Location/Qualifiers rRNA 1..2047 /note="putative" source 1..2047 /organism="Plasmodium cynomolgi" /dev_stage="asexual" /sequenced_mol="rRNA" BASE COUNT 618 a 335 c 436 g 658 t ORIGIN BASE COUNT 618 a 335 c 436 g 658 t 3856 others ORIGIN 1 |~~~~~~~~~ ~~~~~AAGGU GGU(UGA)UC UU|GCCAGU- A-GUCA-UAU --GCUUGUCU 61 CAAA|-GAUU AA-GCCAUGC A-AGUGA-AA GU|------- |--------- ----[----- 121 ---------- --------au augcauauuu ---------- -uaua-ugua gaa]------ 181 -----|---A CU|G-CGAA- CGGCU-CAUU AAAA-cagu- uau-aauc-- ----uacuug 241 acau<----- ---------- ---------- ---------- ---------- ----uuuuuc 301 u>AUAAGG-A UAACUACGG( -A-AAAG)CU GUAGC-UAA- UACUUG---- ---------- 361 ---------- ---------- ---------- -- -guaucaauc -ga|guuucu ga|--CCU-A UCA--GCUUU U-GAUGUUA- 1141 GG(-GUAUUG G)CCU-AACA U-|GGCUA-U GAC|GGGU-A A-CGGG|GAA -U-(UAGA-) 1201 GUU-CGAUU- CCG|GAGAGG G-AGCC(U-G AGAAAU)AGC UACC-ACAUC (UAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GU- AAAUU-ACCC -AAUUCU-A( ---aag--)A 1321 AGAG-A-GGU -|A|GUGACA AGAA-AU--- ---------- ---------- ---------- 1381 -----|---- ---------- ---------- ---------- ---------- ---------- 1441 --------AA CAAU-CAAG- -GCCA(---- ---auc-)UG GC-UU-UGUA A-UUGGAAU- 1501 ------GAUG ----GGAAUU -UAAA--ACC U-----UC-C C-A-A-AACU C---->AAUU 1561 GGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCCAA 1621 U-AGCGUA|U AUUAA--AAU UGUUG-CAG| UUA--AAACG CUCGUAGUUG |--------- 1681 ---------- ---------- ---------- ---------- ---------- -|-------< 1741 aauuucaaag a-a-ucgaua uuuuaaguaa cgcuuuu-ag cuuaau-cca ca--uaacug 1801 au-ac---ua c-----g-ug ucgacuu--- --------ug ugcguauu-u ug-cuauuau 1861 -guguucuuu u-aauuaaaa ugauucu-uu uua------- ----aggucu uuucuu---- 1921 -----gcuuc g--gc----- --uuuugaag aucu------ ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- --UGUUACUU UG-AGUA--A 2461 AUUAGAGUGU UC-AA-AG-C AAACagaua- ---------- ---------- ------uagc 2521 au---ugcgC GUU--U--GA AUACUA-CAG CAUGGAA|UA -ACAAAA-UU -GAACaAGUC 2581 ag-------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- -----aa-uu u--u|guu-c 2821 -uu-uuuucu -ua-uu---- --------uu GGC-UUaGUU A--CGAUUAA UA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGAG|UAGC U--------- 3001 --UGGGGGCA UU|--UGUAU UCAGAUG-UC -AGAG(GU-G AAA---)UUC U-UAGA-U-U 3061 UUCUG-GAG- A-CAAACA-A CUGC(-GAAA )--GC|A--- UUUGCC-UA| AA-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUA ---CUUCCAU -UAA-U|CA- A-GAACGAAA 3301 GUUAAGGGA- GUGAAGACG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CGUAA|UCU UA--ACC-AU AAACUAUGCC GAC|UA|--- 3421 --GGCUU-UG GAU-G-A--- ----(----- ---------) aagauuuuaa aa---uaag- 3481 --agauuu-u cuc--(uucg --)--gaguu aau-cucuua --gauu-gcu ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------U C-CU-UCA-G -U-GCCuu-- ---------- ----auGA(- 3661 GAAA-)UCa- -AAGUC-uuu gGGU|-U|C- UGGGGCGAGU AU--UC-GC( --GCAA-)GC 3721 GAG-AAAGUU -AAAA--GAA -UUG|AC-GG -AA-GGGCA- -CCAC-CAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --C-GU|-GG 4021 AGCUUGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--AAA ACUCACUAGU UU[aag-aca 4081 agag-uagga uu-----gac aga(uuaaua g-c)------ ucuuu----- cuu-gauu-u 4141 cuugga---- -]-------- |--------- ---------- ---------- ---------- 4201 ---------- ---|UG-GU- GAU-G-CAUG |GCC|GU-UU UUA|GUUCG- U|GAA(UAUG 4261 A-)UUUGUC- -UGG(UU-AA UU)CCGAUA- AC-GAACGAG AUCUU-AA|- ---------- 4321 ---------- ---[CCU-GC UAAUUAGcgg caaauacgau auauucuuau augg-gauug 4381 aauacgguug auuu--gcuu ----auuuug aag-aa-aau auuggga-ug c(guaaa--- 4441 --)gug-ucc cuuuccc--- ---------- ---------- ---------- ---------- 4501 -----uuuuc uacuu-aauu c--------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- gc---uuauc auacuguuuc 4621 -uuuuucgug uaagaaugu- ----auuugc uugauug--- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- -----uaaag CU-------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------U CUUAGAGG]- --|------- ---------- AACG-AUG-U -G-U(----- 5041 --GUCUA-)A CACA-A-GGA AGUU-UAAGG CAACAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UG A|UGUC|CUU 5221 A-G-A-UGAA CUAG-GCUGC A-CGCGUGCU ACACU--G-A UAUGU----- ---------- 5281 ---------- -----[auaa cgaguua--- ---------- -----cuaa- aau---uacg 5341 uu-------u cug------( -cuug)---- --caga---- ----uucgua ---------c 5401 uuuuccu-cc acu(gaaa-) agugu----a gguaaucuuu aucaau]--- ---------- 5461 -------ACA UAU-C-G--- UGAU-G-GGG AUAGAUUAU( UGCAAUUA)U UAAUCUUG-A 5521 ACGAGG-AAU G--CCUAGUA AG-CAU-GAU (-UCAUCAG- )AUUGU-G-C -UGACUACG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUCC-U-A CC-GAU--UG AA-AGAUau- 5641 gau-gaau-- ugu-uugga- caag-aaga- aagg-gga-- ---------- ---------- 5701 -------(uu aua---)--- ---------- ---------- ---------- --uc-uuc-- 5761 -uuuuu-ucu -ggaa-|aaa -ccguaaauc cu-AUC-U-U UUAA-AGGAA GG-AGAA-G- 5821 UCGUAACAAG GU-------- -----U-U-C CGUAGG(UGA A)nnnnnnnn nnnnnnn--- 5881 --nnn~~~~~ ~~~~~~~~|| ||| // LOCUS P.falc.A 5903 bp RNA RNA 11-JAN-191 DEFINITION Plasmodium falciparum (A stage). ACCESSION No information KEYWORDS No information. SOURCE Plasmodium falciparum (A stage). ORGANISM Plasmodium falciparum (A stage). REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: M19172 LOCUS PFARGEA 2090 bp ds-DNA INV 15-NOV-1992 DEFINITION P.falciparum 18S ribosomal RNA in asexual parasites. ACCESSION M19172 KEYWORDS 18S ribosomal RNA; ribosomal RNA. SOURCE P.falciparum DNA, clone A. ORGANISM Plasmodium falciparum Eukaryota; Animalia; Protozoa; Apicomplexa; Sporozoasida; Coccidiasina; Eucoccidiida; Haemosporina; Plasmodiidae. REFERENCE 1 (bases 1 to 2090) AUTHORS McCutchan,T.F., De la Cruz,V.F., Lal,A.A., Gunderson,J.H., Elwood,H.J. and Sogin,M.L. TITLE Primary sequences of two small subunit ribosomal RNA genes from Plasmodium falciparum JOURNAL Mol. Biochem. Parasitol. 28, 63-68 (1988) STANDARD full automatic COMMENT NCBI gi: 160642 FEATURES Location/Qualifiers source 1..2090 /organism="Plasmodium falciparum" BASE COUNT 645 a 324 c 420 g 701 t ORIGIN BASE COUNT 645 a 324 c 420 g 701 t 3813 others ORIGIN 1 |~~~~~~~~~ ~~~~~AACCU GGU(UGA)UC UU|GCCAGU- A-GUCA-UAU --GCUUGUCU 61 CAAA|-GAUU AA-GCCAUGC A-AGUGA-AA GU|------- |--------- ----[----- 121 ---------- --------au auauauauuu ---------- -uaua-ugua gaa]------ 181 -----|---A CU|G-CGAA- CGGCU-CAUU AAAA-cagu- uau-aguc-- ----uacuug 241 acau<----- ---------- ---------- ---------- ---------- ----uuuuau 301 u>AUAAGG-A UAACUACGG( -A-AAAG)CU GUAGC-UAA- UACUUG---- ---------- 361 ---------- ---------- ---------- -- -guaucaauc -ga|guuucu ga|--CCU-A UCA--GCUUU U-GAUGUUA- 1141 GG(-GUAUUG G)CCU-AACA U-|GGCUA-U GAC|GGGU-A A-CGGG|GAA -U-(UAGA-) 1201 GUU-CGAUU- CCG|GAGAGG G-AGCC(U-G AGAAAU)AGC UACC-ACAUC (UAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GU- AAAUU-ACCC -AAUUCU-A( ---aag--)A 1321 AGAG-A-GGU -|A|GUGACA AGAA-AU--- ---------- ---------- ---------- 1381 -----|---- ---------- ---------- ---------- ---------- ---------- 1441 --------AA CAAUGCAAG- -GCCA(---- --auuuu)UG GU-UU-UGUA A-UUGGAAU- 1501 ------GGUG ----GGAAUU -UAAA--ACC U-----UC-C C-AGA-GUAA C---->AAUU 1561 GGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCCAA 1621 U-AGCGUA|U AUUAA--AAU UGUUG-CAG| UUA--AAACG CUCGUAGUUG |--------- 1681 ---------- ---------- ---------- ---------- ---------- -|-------< 1741 aauuucaaag a-a-ucgaua uuuuauugua acuauuc-ua ggggaa-cua uu-uuagcuu 1801 uu-gg---cu uu-------- ---------- --------aa uacgcuu--c cu-cuauuau 1861 uauguucuuu a-aauaacaa agauucu-uu uua------- ----aaauc- cccacuuuu- 1921 -----gcuuu u--gc----- uuuuuugggg auuu------ ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- --UGUUACUU UG-AGUA--A 2461 AUUAGAGUGU UC-AA-AG-C AAACaguua- ---------- ---------- ------aagc 2521 auuu-acugU GUU--U--GA AUACUA-UAG CAUGGAA|UA -ACAAAA-UU -GAACaAGCU 2581 aa-------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- -----aa-uu uuuu|guu-c 2821 -uu-uuuucu -ua-uu---- --------uu GGC-UUaGUU A--CGAUUAA UA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGAG|UAGC U--------- 3001 --UGGGGACA UU|--CGUAU UCAGAUG-UC -AGAG(GU-G AAA---)UUC U-UAGA-U-U 3061 UUCUG-GAG- A-CGAACA-A CUGC(-GAAA )--GC|A--- UUUGUC-UA| AA-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUA ---CUUCCAU -UAA-U|CA- A-GAACGAAA 3301 GUUAAGGGA- GUGAAGACG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CGUAA|UCU UA--ACC-AU AAACUAUGCC GAC|UA|--- 3421 --GGUGU-UG GAU-G-A--- ----(----- ---------) aaguguuaaa aa---uaaa- 3481 --agucau-c u----(uucg --)----agg uga-cuuuua --gauu-gcu ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------U C-CU-UCA-G -U-ACCuu-- ---------- ----auGA(- 3661 GAAA-)UCa- -AAGUC-uuu gGGU|-U|C- UGGGGCGAGU AU--UC-GC( --GCAA-)GC 3721 GAG-AAAGUU -AAAA--GAA -UUG|AC-GG -AA-GGGCA- -CCAC-CAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --C-GU|-GG 4021 AGCUUGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--GAA ACUCACUAGU UU[aag-aca 4081 agag-uagga uu-----gac aga(uuaaua g-c)------ ucuuu----- cuu-gauu-u 4141 cuugga---- -]-------- |--------- ---------- ---------- ---------- 4201 ---------- ---|UG-GU- GAU-G-CAUG |GCC|GU-UU UUA|GUUCG- U|GAA(UAUG 4261 A-)UUUGUC- -UGG(UU-AA UU)CCGAUA- AC-GAACGAG AUCUU-AA|- ---------- 4321 ---------- ---[CCU-GC UAAUUAGcgg cgaguacacu auauucuuau uuga-aauug 4381 aacauaggua acuau-acau ----uuauu- caguaaucaa auuaggauau u(uuuauuaa 4441 --)aauaucc uuuuccc--- ---------- ---------- ---------- ---------- 4501 -----uguuc uacuaauaaa uu-------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- gu---uuuuu acucuauuuc 4621 ucucuucuuu uaagaaugu- ----acuugc uugauug--- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- -----aaaag CU-------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------U CUUAGAGG]- --|------- ---------- AACA-UUG-U -G-U(----- 5041 --GUCUA-)A CACA-A-GGA AGUU-UAAGG CAACAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UG A|UGUC|CUU 5221 A-G-A-UGAA CUAG-GCUGC A-CGCGUGCU ACACU--G-A UAUAU----- ---------- 5281 ---------- -----[auaa cgaguuu--- ---------- -----uuaaa aa----uaug 5341 cuuauauuug uauc-----( --uuu)---- -gaugcuuau auuuugcaua ---------c 5401 uuuuccu-cc gcc(gaaa-) ggcgu----a gguaaucuuu aucaau]--- ---------- 5461 -------AUA UAU-C-G--- UGAU-G-GGG AUAGAUUAU( UGCAAUUA)U UAAUCUUG-A 5521 ACGAGG-AAU G--CCUAGUA AG-CAU-GAU (-UCAUCAG- )AUUGU-G-C -UGACUACG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUCC-U-A CC-GAU--UG AA-AGAUau- 5641 gau-gaau-- ugu-uugga- caag-aaaa- auug-aau-- ---------- ---------- 5701 -------(ua u-----)--- ---------- ---------- ---------- --au-ucu-- 5761 uuuuuu-ucu -ggaa-|aaa -ccguaaauc cu-AUC-U-U UUAA-AGGAA GG-AGAA-G- 5821 UCGUAACAAG GU-------- -----U-U-C CGUAGG(UGA A)CCUGCGGA AGGAUCA--- 5881 --UUA~~~~~ ~~~~~~~~|| ||| // LOCUS P.frag.A 5903 bp RNA RNA 11-JAN-191 DEFINITION Plasmodium fragile. ACCESSION No information KEYWORDS No information. SOURCE Plasmodium fragile. ORGANISM Plasmodium fragile. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: M61722 LOCUS PFARRSS 2071 bp ss-rRNA RNA 30-MAR-1991 DEFINITION Plasmodium fragile asexually expressed ribosomal RNA small subunit. ACCESSION M61722 KEYWORDS ribosomal RNA small subunit. SOURCE Plasmodium fragile ribosomal RNA. ORGANISM Plasmodium fragile Eukaryota; Animalia; Protozoa; Microspora; Microsporea; Microsporida; Haemosporina; Plasmodiidae. REFERENCE 1 (bases 1 to 2071) AUTHORS Waters,A.P., Higgins,D.G. and McCutchan,T.F. TITLE Plasmodium falciparum appears to have arisen as a result of lateral transfer between human and avian hosts JOURNAL Proc. Natl. Acad. Sci. U.S.A. (1991) In press STANDARD full staff_entry FEATURES Location/Qualifiers rRNA 1..2071 /product="ribosomal RNA small subunit" /gene="small subunit rRNA" BASE COUNT 625 a 342 c 441 g 663 t ORIGIN BASE COUNT 625 a 342 c 441 g 663 t 3832 others ORIGIN 1 |~~~~~~~~~ ~~~~~~ACCU GGU(UGA)UC UU|GCCAGU- A-GUCA-UAU --GCCUGUCU 61 CAAA|-GAUU AAAGCCAUGC A-AGUGA-AA GU|------- |--------- ----[----- 121 ---------- --------au augcauauuu ---------- -uaua-ugua gaa]------ 181 -----|---A CU|G-CGAA- CGGCU-CAUU AAAA-cagu- uau-aauc-- ----uacuug 241 acau<----- ---------- ---------- ---------- ---------- ----uuucua 301 u>AUAAGG-A UAACUACGG( -A-AAAG)CU GUAGC-UAA- UACUUG---- ---------- 361 ---------- ---------- ---------- -- -guaucaauc -ga|guuucu ga|--CCU-A UCA--GCUUU U-GAUGUUAC 1141 GG(-GUAUUG G)CCU-AACA U-|GGCUA-U GAC|GGGU-A A-CGGG|GAA -U-(UAGA-) 1201 GUU-CGAUU- CCG|GAGAGG G-AGCC(U-G AGAAAU)AGC UACC-ACAUC (UAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GU- AAAUU-ACCC -AAUUCU-A( ---aag--)A 1321 AGAG-A-GGU -|A|GUGACA AGAA-AU--- ---------- ---------- ---------- 1381 -----|---- ---------- ---------- ---------- ---------- ---------- 1441 --------AA CAAUACAAG- -GCCA(---- ---auc-)UG GC-UU-UGUA A-UUGGAAU- 1501 ------GAUG ----GGAAUU -UAAA--ACC U-----UC-C C-A-A-AAUU C---->AAUU 1561 GGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCCAA 1621 U-AGCGUA|U AUUAA--AAU UGUUG-CAG| UUA--AAACG CUCGUAGUUG |--------- 1681 ---------- ---------- ---------- ---------- ---------- -|-------< 1741 aauuucaaag a-a-ucgaua uuuuaaguaa cgcuuuu-ag cuaaau-cca ca--uaacug 1801 au-ac---ua c-----g-ua ucgacuu--- --------ug ugcgcauu-u ug-cuauuau 1861 -guguucuuu u-aauuaaaa ugauucu-uu uua------- ----aggucu uucuuu---- 1921 ----ggcucc g--gcu---- ----augaag aucu------ ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- --UGUUACUU UG-AGUA--A 2461 AUUAGAGUGU UC-AA-AG-C AAACagaua- ---------- ---------- ------uaac 2521 cuu--ugugU GUU--U--GA AUACUA-CAG CAUGGAA|UA -ACAAAA-UU -GAACaAGUC 2581 ag-------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- -----aa-uu u-uu|guu-c 2821 -uu-uuuucu -ua-uu---- --------uu GGC-UUaGUU A--CGAUUAA UA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGAG|UAGC U--------- 3001 --UGGGGGCA UU|--UGUAU UCAGAUG-UC -AGAG(GU-G AAA---)UUC U-UAGA-U-U 3061 UUCUG-GAG- A-CAAACA-A CUGC(-GAAA )--GC|A--- UUUGCC-UA| AA-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUA ---CUUCCAU -UAA-U|CA- A-GAACGAAA 3301 GUUAAGGGA- GUGAAGACG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CGUAA|UCU UA--ACC-AU AAACUAUGCC GAC|UA|--- 3421 --GGCUU-UG GAU-G-A--- ----(----- ---------) aagauuuuaa aa---uaaga 3481 --gcuuuu-u cuc--(uucg --)--gagaa gaa-gucuua --gauu-gcu ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------U C-CU-UCA-G -U-GCCuu-- ---------- ----auGA(- 3661 GAAA-)UCa- -AAGUC-uuu gGGU|-U|C- UGGGGCGAGU AU--UC-GC( --GCAA-)GC 3721 GAG-AAAGUU -AAAA--GAA -UUG|AC-GG -AA-GGGCA- -CCAC-CAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --C-GU|-GG 4021 AGCUUGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--AAA ACUCACUAGU UU[aag-aca 4081 agag-uagga uu-----gac ag-(uuaaua g-c)------ ucuuu----- cuu-gauu-u 4141 cuugga---- -]-------- |--------- ---------- ---------- ---------- 4201 ---------- ---|UG-GU- GAU-G-CAUG |GCC|GU-UU UUA|GUUCG- U|GAA(UAUG 4261 A-)UUUGUC- -UGG(UU-AA UU)CUGAUA- AC-GAACGAG AUCUU-AA|- ---------- 4321 ---------- ---[CCU-GC UAAUUAGcgg caaauacgau auauucuuau gugg-aauug 4381 aauaugguug auuu--gcuu ----auuuug cag-aa-aau auuggaa-ug c(guaacaa- 4441 --)gug-uuc cuuuccc--- ---------- ---------- ---------- ---------- 4501 -----uuuuc uacua-aauu u--------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- gc---uuauc auacuauuuc 4621 -uuuucugcg uaugaaugu- ----auuugc uugauug--- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- -----uaaag CU-------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------U CUUAGAGG]- --|------- ---------- AACG-AUG-U -G-U(----- 5041 --GUCUA-)A CACA-A-GGA AGUU-UAAGG CAACAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UG A|UGUC|CUU 5221 A-G-A-UGAA CUAG-GCUGC A-CGCGUGCU ACACU--G-A UAUGU----- ---------- 5281 ---------- -----[auaa cgaguac--- ---------- -----uuaaa aau---uacg 5341 uuu------g gccg-----( -cuug)---- -cgggc---- --auuucgua ---------c 5401 uuuuccu-cc gcu(gaaa-) agugu----a gguaaucuuu aucaau]--- ---------- 5461 -------ACA UAU-C-G--- UGAU-G-GGG AUAGAUUAU( UGCAAUUA)U UAAUCUUG-A 5521 ACGAGG-AAU G--CCUAGUA AG-CAU-GAU (-UCAUCAG- )AUUGU-G-C -UGACUACG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUCC-U-A CC-GAU--UG AA-AGAUau- 5641 gau-gaau-- ugu-uugga- caag-aaga- acgg-ggau- ---------- ---------- 5701 -------(ua u-----)--- ---------- ---------- ---------- -auc-uuu-- 5761 -guuuu-ucu -ggaa-|aaa -ccguaaauc cu-AUC-U-U UUAA-AGGAA GG-AGAA-G- 5821 UCGUAACAAG GU-------- -----U-U-C CGCAGG(UUC A)CCUACGG~ ~~~~~~~~~~ 5881 ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS P.gall.A 5903 bp RNA RNA 11-JAN-191 DEFINITION Plasmodium gallinaceum. ACCESSION No information KEYWORDS No information. SOURCE Plasmodium gallinaceum. ORGANISM Plasmodium gallinaceum. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: M61723 LOCUS PFARRSSAE 2102 bp ss-rRNA RNA 30-MAR-1991 DEFINITION Plasmodium gallinaceum asexually expressed ribosomal RNA small subunit. ACCESSION M61723 KEYWORDS ribosomal RNA small subunit. SOURCE Plasmodium gallinaceum ribosomal RNA. ORGANISM Plasmodium gallinaceum Eukaryota; Animalia; Protozoa; Microspora; Microsporea; Microsporida; Haemosporina; Plasmodiidae. REFERENCE 1 (bases 1 to 2102) AUTHORS Waters,A.P., Higgins,D.G. and McCutchan,T.F. TITLE Plasmodium falciparum appears to have arisen as a result of lateral transfer between human and avian hosts JOURNAL Proc. Natl. Acad. Sci. U.S.A. (1991) In press STANDARD full staff_entry FEATURES Location/Qualifiers rRNA 1..2102 /product="ribosomal RNA small subunit" /gene="small subunit rRNA" BASE COUNT 690 a 311 c 416 g 685 t ORIGIN BASE COUNT 690 a 311 c 416 g 685 t 3801 others ORIGIN 1 |~~~~~~~~~ ~~~~~AACCU GGU(UGA)UC UU|GCCAGU- A-GUCA-UAU --GCUUGUCU 61 CAAA|-GAUU AA-GCCAUGC A-AGUGA-AA GU|------- |--------- ----[----- 121 ---------- --------au auauauauuu ---------- -auua-uaua gaa]------ 181 -----|---A CU|G-CGAA- CGGCU-CAUU AAAA-cagu- uau-aauc-- ----uacuug 241 acau<----- ---------- ---------- ---------- ---------- ----uuuuuu 301 u>AUAAGG-A UAACUACGG( -A-AAAG)CU GUAGC-UAA- UACUUG---- ---------- 361 ---------- ---------- ---------- -- -guaucaauc -ga|guuucu ga|--CCU-A UCA--GCUUU U-GAUGUUA- 1141 GG(-GUAUUG G)CCU-AACA U-|GGCUA-U GAC|GGGU-A A-CGGG|GAA -U-(UAGA-) 1201 GUU-CGAUU- CCG|GAGAGG G-AGCC(U-G AGAAAU)AGC UACC-ACAUC (UAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GU- AAAUU-ACCC -AAUUCU-A( ---aag--)A 1321 AGAG-A-GGU -|A|GUGACA AGAA-AU--- ---------- ---------- ---------- 1381 -----|---- ---------- ---------- ---------- ---------- ---------- 1441 --------AA CAAUGCAAG- -GCCA(---- --aauuu)UG GU-UU-UGCA A-UUGGAAU- 1501 ------GAUA ----GGAAUU -UAAA--AAC U-----UC-C U-AAA-GUAA C---->AAUU 1561 GGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCCAA 1621 U-AGCGUA|U AUUAA--AAU UGUUG-CAG| UUA--AAACG CUCGUAGUUG |--------- 1681 ---------- ---------- ---------- ---------- ---------- -|-------< 1741 aauuucaaag a-aucaau-u uuuaaaaaau gcuuu--auc ggaugc-gug uuaaauggcg 1801 cu-ac---gg cg-caua-uu u--------- --------uu cacaaau--c ug-auaauau 1861 gcguuuuuua a-aauaaaau agauucu-uu uua------- ----aaaau- ucuu------ 1921 cguugcuuuu ua-agugaug ------agaa uuuu------ ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- --UGUUACUU UG-AGUA--A 2461 AUUAGAGUGU UC-AA-AG-C AAACagugu- ---------- ---------- -----auaac 2521 aggcaacugU GUU--U--GA AUACUA-CAG CAUGGAA|UA -ACAAAA-UU -GAACaAGCU 2581 aa-------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- -----aa-uu u-uu|guu-c 2821 -uu-uuuucu -ua-uu---- --------uu GGC-UUaGUU A--CGAUUAA UA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGAG|UAGU U--------- 3001 --UGGGGGCA UU|--CGUAU UCAGAUG-UC -AGAG(GU-G AAA---)UUC U-UAGA-U-U 3061 UUCUG-GAG- A-CGAACA-A CUGC(-GAAA )CGGC|A--- UUUGCC-UA| AA-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUA ---CUUCCAU -UAA-U|CA- A-GAACGAAA 3301 GUUAAGGGA- GUGAAGACG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CGUAA|UCU UA--ACC-AU AAACUAUGCC GAC|UA|--- 3421 --GGUGU-UG GAU-G-A--- ----(----- ---------) aaguguuaaa aa---uaaa- 3481 --agacga-u cugau(guaa ca)aucggau ugu-cuuuua --gcuu-gcu ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------U C-CU-UCA-G -U-ACCuu-- ---------- ----auGA(- 3661 GAAA-)UCa- -AAGUC-uuu gGGU|-U|C- UGGGGCGAGU AU--UC-GC( --GCAUA)GC 3721 GAG-AAAGUU -AAAA--GAA -UU-|AC-GG -AA-GGGCA- -CCAC-CAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --C-GU|-GG 4021 AGCUUGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--AAA ACUCACUAGU UU[aag-aca 4081 agag-uagga uu-----gac aga(uuaaua g-c)------ ucuuu----- cuu-gauu-u 4141 cuugga---- -]-------- |--------- ---------- ---------- ---------- 4201 ---------- ---|UG-GU- GAU-G-CAUG |GCC|GU-UU UUA|GUUCG- U|GAA(UAUG 4261 A-)UUUGUC- -UGG(UU-AA UU)CCGAUA- AC-GAACGAG AUCUU-AA|- ---------- 4321 ---------- ---[CCU-GC UAAUUAGcgg uaaauacaac auauucuuaa acaa-agaag 4381 aauauagaua aaaauuaca- ----aauaag -ug-aa-aau auuagga-ua u(uuuuua-- 4441 --)aua-ucc uuuuccc--- ---------- ---------- ---------- ---------- 4501 -----uuuuc aacuu-auuu u--------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- gu-uuuuuuu acucuauuuc 4621 uuuuuuugua uaagaaugu- ----auuuac uugauug--- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- -----uaaag CU-------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------U CUUAGAGG]- --|------- ---------- GACA-UUG-U -G-U(----- 5041 --GUCUA-)A CACA-A-GGA AGUU-UAAGG CAACAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UG A|UGUC|CUU 5221 A-G-A-UGAA CUAG-GCUGC A-CGCGUGCU ACACU--G-A UAUAU----- ---------- 5281 ---------- -----[auaa cgaguua--- ---------- -----uuaa- aaa---uaua 5341 cgaau----g uauauauau( --uuu)auau auauac---- auuuuguaua ---------a 5401 uuuuccu-cc acu(gaaa-) agugu----a gguaaucuuu aucaau]--- ---------- 5461 -------AUA UAU-C-G--- UGAU-G-GGG AUAGAUUAU( UGCAAUUA)U UAAUCUUG-A 5521 ACGAGG-AAU G--CCUAGUA AG-CAU-GAU (-UUAUCAG- )AUUGU-G-C -UGACUACG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUCC-U-A CC-GAU--UG AA-AGAUau- 5641 gau-gaau-- ugu-uugga- caag-aaga- aaua-aaau- ---------- ---------- 5701 -------(uu au----)--- ---------- ---------- ---------- -auu-uug-- 5761 uuuuuu-uuu -ggaa-|aaa -ccguaaauc cu-AUC-U-U UUAA-AGGAA GG-AGAA-G- 5821 UCGUAACAAG GU-------- -----U-U-C CGUAGG(UGA A)~~~~~~~~ ~~~~~~~~~~ 5881 ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS P.know.A 5903 bp RNA RNA 11-JAN-191 DEFINITION Plasmodium knowlesi. ACCESSION No information KEYWORDS No information. SOURCE Plasmodium knowlesi. ORGANISM Plasmodium knowlesi. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: L07560 LOCUS PFARRSSU 2096 bp ss-rRNA RNA 02-JUL-1993 DEFINITION Plasmodium knowlesi small subunit ribosomal RNA sequence. ACCESSION L07560 KEYWORDS ribosomal RNA; small subunit ribosomal RNA. SOURCE Plasmodium knowlesi rRNA. ORGANISM Plasmodium knowlesi Eukaryota; Animalia; Protozoa; Apicomplexa; Sporozoasida; Coccidiasina; Eucoccidiida; Haemosporina; Plasmodiidae. REFERENCE 1 (bases 1 to 2096) AUTHORS Waters,A.P., Higgins,D.G. and McCutchan,T.F. TITLE Evolutionary Relatedness of Simian Models of Plasmodium JOURNAL Mol. Biol. Evol. (1993) In press STANDARD full automatic FEATURES Location/Qualifiers rRNA 1..2096 /product="small subunit ribosomal RNA" /evidence=EXPERIMENTAL source 1..2096 /organism="Plasmodium knowlesi" /germline /sequenced_mol="rRNA" BASE COUNT 640 a 338 c 429 g 689 t ORIGIN BASE COUNT 640 a 338 c 429 g 689 t 3807 others ORIGIN 1 |~~~~~~~~~ ~~~~~AACCU GGU(UGA)UC UU|GCCAGU- A-GUCA-UAU --GCUUGUCU 61 CAAA|-GAUU AA-GCCAUGC A-AGUGA-AA GU|------- |--------- ----[----- 121 ---------- --------au augcauauuu ---------- -uaua-ugua gaa]------ 181 -----|---A CU|G-CGAA- CGGCU-CAUU AAAA-cagu- uau-aauc-- ----uacuug 241 acau<----- ---------- ---------- ---------- ---------- ----uuucua 301 u>AUAAGG-A UAACUACGG( -A-AAAG)CU GUAGC-UAA- UACUUG---- ---------- 361 ---------- ---------- ---------- -- -guaucaauc -ga|guuucu ga|--CCU-A UCA--GCUUU U-GAUGUUA- 1141 GG(-GUAUUG G)CCU-AACA U-|GGCUA-U GAC|GGGU-A A-CGGG|GAA -U-(UAGA-) 1201 GUU-CGAUU- CCG|GAGAGG G-AGCC(U-G AGAAAU)AGC UACC-ACAUC (UAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GU- AAAUU-ACCC -AAUUCU-A( ---aag--)A 1321 AGAG-A-GGU -|A|GUGACA AGAA-AU--- ---------- ---------- ---------- 1381 -----|---- ---------- ---------- ---------- ---------- ---------- 1441 --------AA CAAUACAAG- -GCCA(---- ---auc-)UG GC-UU-UGUA A-UUGGAAU- 1501 ------GAUG ----GGAAUU -UAAA--ACC U-----UC-C C-A-A-AAUU C---->AAUU 1561 GGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCCAA 1621 U-AGCGUA|U AUUAA--AAU UGUUG-CAG| UUA--AAACG CUCGUAGUUG |--------- 1681 ---------- ---------- ---------- ---------- ---------- -|-------< 1741 aauuucaaag a-a-ucgaua uuuuaag-ca acgcuucuag cuauaa-auc cacauaacug 1801 au-gc---cu cc-gcgu-au cgacuu-u-- ---------- ---------- gugcgcauuu 1861 ua-gcuauua u-guguucuu u-uaauuaaa augauucu-u uuuaagauuc aucuauuaaa 1921 aauucgcuuc g--gcauaau uuuuuugaug aucu------ ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- --UGUUACUU UG-AGUA--A 2461 AUUAGAGUGU UC-AA-AG-C AAACagaua- ---------- ---------- ------uagc 2521 auu--ugugC GUU--U--GA AUACUA-CAG CAUGGAA|UA -ACAAAA-UU -GAACaAGUC 2581 ag-------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- -----aauuu uuuu|guu-c 2821 -uu-uuuucu -ua-uu---- --------uu GGC-UUaGUU A--CGAUUAA UA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGAG|UAGC U--------- 3001 --UGGGGGCA UU|--UGUAU UCAGAUG-UC -AGAG(GU-G AAA---)UUC U-UAGA-U-U 3061 UUCUG-GAG- A-CAAACA-A CUGC(-GAAA )--GC|A--- UUUGCC-UA| AA-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUA ---CUUCCAU -UAA-U|CA- A-GAACGAAA 3301 GUUAAGGGA- GUGAAGACG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CGUAA|UCU UA--ACC-AU AAACUAUGCC GAC|UA|--- 3421 --GGCUU-UG GAU-G-A--- ----(----- ---------) aagauuuuaa aa--uaaga- 3481 guuuu--ucu uu-u-cucuc cggagauuag aacucuua-- --gauu-gcu ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------U C-CU-UCA-G -U-GCCuu-- ---------- ----auGA(- 3661 GAAA-)UCa- -AAGUC-uuu gGGU|-U|C- UGGGGCGAGU AU--UC-GC( --GCAA-)GC 3721 GAG-AAAGUU -AAAA--GAA -UUG|AC-GG -AA-GGGCA- -CCAC-CAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --C-GU|-GG 4021 AGCUUGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--AAA ACUCACUAGU UU[aag-aca 4081 agag-uagga uu-----gac aga(uuaaua g-c)------ ucuuu----- cuu-gauu-u 4141 cuugga---- -]-------- |--------- ---------- ---------- ---------- 4201 ---------- ---|UG-GU- GAU-G-CAUG |GCC|GU-UU UUA|GUUCG- U|GAA(UAUG 4261 A-)UUUGUC- -UGG(UU-AA UU)CCGAUA- AC-GAACGAG AUCUU-AA|- ---------- 4321 ---------- ---[CCU-GC UAAUUAGcgg caaauacgau auauucuuau guag-aauug 4381 aauauagugg auuu--guua g---auuuug aag-aa-aau auuggaauua c(guuaaau- 4441 --)gugauuc cuuuccc--- ---------- ---------- ---------- ---------- 4501 -----uuuuc uacuu-aauu u--------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ac---auuuc caucuauuuc 4621 -uuuuuugcg uaugaaugu- ----auuugc uugauug--- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- -----uaaag CU-------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------U CUUAGAGG]- --|------- ---------- AACG-AUG-U -G-U(----- 5041 --GUCUA-)A CACA-A-GGA AGUU-UAAGG CAACAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UG A|UGUC|CUU 5221 A-G-A-UGAA CUAG-GCUGC A-CGCGUGCU ACACU--G-A UAUGU----- ---------- 5281 ---------- -----[auaa cgaguua--- ---------- -----cuaa- aau---uacg 5341 auuuu----a gcug-----( -cuug)---- -caguu---- uauuuucgua ---------c 5401 uuuuccu-cc acu(gaaa-) agugu----a gguaaucuuu aucaau]--- ---------- 5461 -------ACA UAU-C-G--- UGAU-G-GGG AUAGAUUAU( UGCAAUUA)U UAAUCUUG-A 5521 ACGAGG-AAU G--CCUAGUA AG-CAU-GAU (-UCAUCAG- )AUUGU-G-C -UGACUACG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUCC-U-A CC-GAU--UG AA-AGAUau- 5641 gau-gaau-- ugu-uugga- caag-aaaa- aauu-ggau- ---------- ---------- 5701 -------(ua u-----)--- ---------- ---------- ---------- -auc-u---- 5761 -uuuuu-uuu -ggaa-|aaa -ccguaaauc cu-AUC-U-U UUAA-AGGAA GG-AGAA-G- 5821 UCGUAACAAG GU-------- -----U-U-C CGUAGG(UGA A)UUCnnnnn nnnnnnn--- 5881 --nnn~~~~~ ~~~~~~~~|| ||| // LOCUS P.loph.A 5903 bp RNA RNA 11-JAN-191 DEFINITION Plasmodium lophurae. ACCESSION No information KEYWORDS No information. SOURCE Plasmodium lophurae. ORGANISM Plasmodium lophurae. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: X13706 LOCUS X13706 2118 bp UNA 15-JUN-1989 DEFINITION Plasmodium lophurae ribosomal RNA small subunit gene. ACCESSION X13706 REFERENCE 1 (bases 1 to 2118; enum. 1 to 2118) AUTHORS Waters,A.P. TITLE ; JOURNAL Unpublished (1988) see COMMENT for author address STANDARD unannotated staff_entry REFERENCE 2 (bases 1 to 2118; enum. 1 to 2118) AUTHORS Waters,A.P., Unnasch,T., Wirth,D.F. and McCutchan,T.F. TITLE Sequence of the p lophurae asexually expressed small rRNA gene JOURNAL Unpublished (1988) see COMMENT for author address STANDARD unannotated staff_entry BASE COUNT 701 a 317 c 413 g 687 t ORIGIN BASE COUNT 701 a 317 c 413 g 687 t 3785 others ORIGIN 1 |~~~~~~~~~ ~~~~~AACCU GGU(UGA)UC UU|GCCAGU- A-GUCA-UAU --GCUUGUCU 61 AAAA|-GAUU AA-GCCAUGC A-AGUGA-AA GU|------- |--------- ----[----- 121 ---------- --------au auauauauuu ---------- -auua-uaua gaa]------ 181 -----|---A CU|G-CGAA- CGGCU-CAUU AAAA-cagu- uau-aauc-- ----uacuug 241 acau<----- ---------- ---------- ---------- ---------- -----uuuuu 301 u>AUAAGG-A UAACUACGG( -A-AAAG)CU GUAGC-UAA- UACUUG---- ---------- 361 ---------- ---------- ---------- -- -guaucaauc -ga|guuucu ga|--CCU-A UCA--GCUUU U-GAUGUUA- 1141 GG(-GUAUUG G)CCU-AACA U-|GGCUA-U GAC|GGGU-A A-CGGG|GAA -U-(UAGA-) 1201 GUU-CGAUU- CCG|GAGAGG G-AGCC(U-G AGAAAU)AGC UACC-ACAUC (UAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GU- AAAUU-ACCC -AAUUCU-A( ---aag--)A 1321 AGAG-A-GGU -|A|GUGACA AGAA-AU--- ---------- ---------- ---------- 1381 -----|---- ---------- ---------- ---------- ---------- ---------- 1441 --------AA CAAUGCAAG- -GUCA(---- --auuuu)UG AU-UU-UGCA A-UUGGAAU- 1501 ------GAUA ----GGAAUU -UAAA--ACC U-----UCcC U-AAA-GUAA C---->AAUU 1561 GGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCCAA 1621 U-AGCGUA|U AUUAA--AAU UGUUG-CAG| UUA--AAACG CUCGUAGUUG |--------- 1681 ---------- ---------- ---------- ---------- ---------- -|-------< 1741 aauuucaaag a-aucuauuu uuaaggaugu gcuuu--auu ggaau---ua ugcuaauuug 1801 uc-ac---uu cg-gugu-uc auuu-uacau acauucuagu aaaaug---- ---------- 1861 uacucuuuaa a-auaaaaaa cauucu-uuu u--------- ----aaaau- ucuu------ 1921 uauugcauuu aa-ugugaug ------agaa uuuu------ ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- --UGUUACUU UG-AGUA--A 2461 AUUAGAGUGU UC-AA-AG-C AAACaguuu- ---------- ---------- --aaaacagc 2521 uaaa-acugU GUU--U--GA AUACUA-CAG CAUGGAA|UA -ACAAAA-UU -GAACaAGCU 2581 aa-------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- -----aa-uu u-uu|guu-c 2821 -uu-uuuucu -ua-uu---- --------uu GGC-UUaGUU A--CGAUUAA UA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGAG|UAGU U--------- 3001 --UGGGGACA UU|--CGUAU UCAGAUG-UC -AGAG(GU-G AAA---)UUC U-UAGA-U-U 3061 UUCUG-GGG- A-CGAACA-A CUGC(-GAAA )--GC|A--- UUUGUC-UA| AA-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUA ---CUUCCAU -UAA-U|CA- A-GAACGAAA 3301 GUUAAGGGA- GUGAAGACG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CGUAA|UCU UA--ACC-AU AAACUAUGCC GAC|UA|--- 3421 --GGUGU-UG GAU-G-A--- ----(----- ---------) aaguguaaaa aa---uaaa- 3481 --agaugu-u cuaau(gcaa --)auuagaa uau-cuuuua --gcuu-gcu ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------U C-CU-UCA-G -U-ACCuu-- ---------- ----auGA(- 3661 GAAA-)UCa- -AAGUC-uuu gGGU|-U|C- UGGGGCGAGU AU--UC-GC( --GCAA-)GC 3721 GAG-AAAGUU -AAAA--GAA -UUG|AC-GG -AA-GGGCA- -CCAC-CAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --C-GU|-GG 4021 AGCUUGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--AAA ACUCACUAGU UU[aag-aca 4081 agag-uagga uu-----gac aga(uuaaua g-c)------ ucuuu----- cuu-gauu-u 4141 cuugga---- -]-------- |--------- ---------- ---------- ---------- 4201 ---------- ---|UG-GU- GAU-G-CAUG |GCC|GU-UU UUA|GUUCG- U|GAA(UAUG 4261 A-)UUUGUC- -UGG(UU-AA UU)CCGAUA- AC-GAACGAG AUCUU-AA|- ---------- 4321 ---------- ---[CCU-GC UAAUUAGcgg uaaauacgac auauucaugu acaa-aaaag 4381 aauauaggca aaaa--auaa cauaaguaau -ac-aa-aau auuagga-ua u(uuuua--- 4441 --)aua-ucu uaauccc--- ---------- ---------- ---------- ---------- 4501 -----uuuuc uauuu-auuu u--------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- gu--uuuuuu guucuauuuc 4621 uuuuuuugug caagaaugu- ----auuuac uuuauug--- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- -----uaaag CU-------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------U CUUAGAGG]- --|------- ---------- GACA-UUG-U -G-U(----- 5041 --GUCUA-)A CACA-A-GGA AGUU-UAAGG CAACAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UG A|UGUC|CUU 5221 A-G-A-UGAA CUAG-GCUGC A-CGCGUGCU ACACU--G-A UAUAU----- ---------- 5281 ---------- -----[auaa cgaguua--- ---------- -----cuaa- aaa---uaua 5341 ucau-----u guauaugua( -uuua)uaca uauaca---- -uuugguaua ---------a 5401 uuuuccu-cc acu(gaaa-) agugu----a gguaaucuuu aucaau]--- ---------- 5461 -------AUA UAU-C-G--- UGAU-G-GGG AUAGAUUAU( UGCAAUUA)U UAAUCUUG-A 5521 ACGAGG-AAU G--CCUAGUA AG-CAU-GAU (-UCAUCAG- )AUUGU-G-C -UGACUACG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUCC-U-A CC-GAU--UG AA-AGAUau- 5641 gau-gaau-- ugu-uugga- caag-aaaa- aaua-aau-- ---------- ---------- 5701 -------(uu au----)--- ---------- ---------- ---------- --au-uug-- 5761 uuuuuu-uuu -ggaa-|aaa -ccguaaauc cu-AUC-U-U UUAA-AGGAA GG-AGAA-G- 5821 UCGUAACAAG GU-------- -----U-U-C CGUAGG(UGA A)CCUGCGGA AGGAUCA--- 5881 --UUA~~~~~ ~~~~~~~~|| ||| // LOCUS P.mala.A 5903 bp RNA RNA 11-JAN-191 DEFINITION Plasmodium malariae. ACCESSION No information KEYWORDS No information. SOURCE Plasmodium malariae. ORGANISM Plasmodium malariae. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: M54897 LOCUS PLMRGBAB 2319 bp ds-DNA INV 14-MAR-1991 DEFINITION P.malariae small subunit ribosomal RNA gene. ACCESSION M54897 KEYWORDS small subunit rRNA. SOURCE P.malariae Uganda-I-CDC DNA. ORGANISM Plasmodium malariae Eukaryota; Animalia; Protozoa; Microspora; Microsporea; Microsporida; Haemosporina; Plasmodiidae. REFERENCE 1 (bases 1 to 2319) AUTHORS Goman,M., Mons,B. and Scaife,J.G. TITLE The complete sequence of a Plasmodium malariae SSUrRNA gene and its comparison to other plasmodial SSUrRNA genes JOURNAL Mol. Biochem. Parasitol. 45, 281-288 (1991) STANDARD simple staff_entry FEATURES Location/Qualifiers rRNA 173..2319 /product="small subunit ribosomal RNA" BASE COUNT 738 a 318 c 453 g 810 t ORIGIN BASE COUNT 683 a 309 c 432 g 723 t 3756 others ORIGIN 1 |~~~~~~~~~ ~~~~~AACCU GGU(UGA)UC UU|GCCAGU- A-GUCA-UAU --GCUUGUCU 61 CAAA|-GAUU AA-GCCAUGC A-AGUGA-AA GU|------- |--------- ----[----- 121 ---------- --------au augcauauuu ---------- -uaua-ugua gaa]------ 181 -----|---A CU|G-CGAA- CGGCU-CAUU AAAA-cagu- uau-aguc-- ----uacuug 241 acau<----- ---------- ---------- ---------- ---------- ----uuuuuu 301 u>AUAAGG-A UAACUACGG( -A-AAAG)CU GUAGC-UAA- UACUUG---- ---------- 361 ---------- ---------- ---------- -- -guaucaauc -ga|guuucu ga|--CCU-A UCA--GCUUU U-GAUGUUA- 1141 GG(-GUAUUG G)CCU-AACA U-|GGCUA-U GAC|GGGU-A A-CGGG|GAA -U-(UAGA-) 1201 GUU-CGAUU- CCG|GAGAGG G-AGCC(U-G AGAAAU)AGC UACC-ACAUC (UAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GU- AAAUU-ACCC -AAUUCU-A( ---aag--)A 1321 AGAG-A-GGU -|A|GUGACA AGAA-AU--- ---------- ---------- ---------- 1381 -----|---- ---------- ---------- ---------- ---------- ---------- 1441 --------AA CAAUGCAAG- -GCCA(---- --aauuu)UG GU-UU-UGCA A-UUGGAAU- 1501 ------GAUG ----GGAAUU -UAAA--ACC U-----UC-C C-A-G-AAGG C---->AAUU 1561 GGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCCAA 1621 U-AGCGUA|U AUUAA--AAU UGUUG-CAG| UUA--AAACG CUCGUAGUUG |--------- 1681 ---------- ---------- ---------- ---------- ---------- -|-------< 1741 aauuucaagg a-a-ucaaua uuuuaaguaa ugcuuuguau auuuau-aac auaguuguac 1801 gu-ua---ag aa-uaac-cg ccaagg-cuu -auauuuuuu cuguuacauu uuguuuuauu 1861 aauauauaua u-gcguucuu a-uuauaaaa augauucu-u uuuaaaauu- cuu------- 1921 ------uugu auaauuuuuu augcauggga auuu------ ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- --UGUUACUU UG-AGUA--A 2461 AUUAGAGUGU UC-AA-AG-C AAACaguua- ---------- ---------- ------aaac 2521 aguu-ucugU GUU--U--GA AUACUA-CAG CAUGGAA|UA -ACAAAA-UU -GAACaAGUC 2581 ag-------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- -----aa-gu u--u|guu-c 2821 -uu-uuuucu -ua-uu---- --------uu GGC-UUaGUU A--CGAUUAA UA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGAG|UAGC U--------- 3001 --UGGGGGCA UU|--UGUAU UCAGAUG-UC -AGAG(GU-G AAA---)UUC U-UAGA-U-U 3061 UUCUG-GAG- A-CAAGCA-A CUGC(-GAAA )--GC|A--- UAUGCC-UA| AA-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUA ---CUUCCAU -UAA-U|CA- A-GAACGAAA 3301 GUUAAGGGA- GUGAAGACG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CGUAA|UCU UA--ACC-AU AAACUAUGCC GAC|UA|--- 3421 --GGUGU-UG GAU-G-A--- ----(----- ---------) uaguguaaaa aa----uaaa 3481 agagaca--u ucuu(auau- )augagug-u uucuuuua-- --gaua-gcu ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------U C-CU-UCA-G -U-ACCuu-- ---------- ----auGA(- 3661 GAAA-)UCA- -AAGUC-uuu gGGU|-U|C- UGGGGCGAGU AU--UC-GC( --GCAA-)GC 3721 GAG-AAAGUU -AAAA--GAA -CCG|AC-GG -AA-GGGGA- --CA--CAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --C-GU|-GG 4021 AGCUUGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--GAA ACUCACUAGU UU[aag-aca 4081 agag-uagga uu-----gac aga(uuaaua g-c)------ ucuuu----- cuu-gauu-u 4141 cuugga---- -]-------- |--------- ---------- ---------- ---------- 4201 ---------- ---|UG-GU- GAU-G-CAUG |GCC|GU-UU UUA|GUUCG- U|GAA(UAUG 4261 A-)UUUGUC- -UGG(UU-AA UU)CCGAUA- AC-GAACGAG AUCUU-AA|- ---------- 4321 ---------- ---[CCU-GC UAAUUAGcgg uaa-uacacu auauucuuaa guga-aauua 4381 gaauauagau aaau--ug-u gcuaauuuug auu-aa-aau auuagaaugu uuuuuuuaau 4441 aaaaacguuc uuuuccc--- ---------- ---------- ---------- ---------- 4501 -----uuuuu uucuuaauua ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- --------ug ca---uauuu auucuuuuuc 4621 uuuuuucgca uaagaaugu- ----auuugc uuaa-ug--- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- -----ua-ag CU-------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------U CUUAGAGG]- --|------- ---------- AACG-AUG-U -G-U(----- 5041 --GUCUA-)A CACA-A-GGA AGUU-UAAGG CAACAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UG A|UGUC|CUU 5221 A-G-A-UGAA CUAG-GCUGC A-CGCGUGCU ACACU--G-A UAUGU----- ---------- 5281 ---------- -----[auaa cgaguau--- ---------- -----uuaaa aauauauauc 5341 -uuguuaugu uauacguau( -uucu)auau guaugcauac aaagaauaua ua-------- 5401 guuugcu--c acu(g-aa-) agugu----a gguaaucuuu aucaau]--- ---------- 5461 -------AUA UAU-C-G--- UGAU-G-GGG AUAGAUUAU( UGCAAUUA)U UAAUCUUG-A 5521 ACGAGG-AAU G--CCUAGUA AG-CAU-GAU (-UCAUCAG- )AUUGU-G-C -UGACUACG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUCC-U-A CC-GAU--UG AA-AGAUau- 5641 gau-gaau-- ugu-uugga- caag-aaaa- aagg-uu--- ---------- ---------- 5701 -------(uu u-----)--- ---------- ---------- ---------- --au-uc--- 5761 -uuuuu-ucu -ggaa-|aaa -ucguaaauc cu-AUC-U-U UUAA-AGGAA GG-AGAAAG- 5821 UCGUAACAAG GU-------- -----U-U-C CGUCGG(UGA A)CCUGCGGA AGGAUCA--- 5881 --UUA~~~~~ ~~~~~~~~|| ||| // LOCUS P.reic.A 5903 bp RNA RNA 11-JAN-191 DEFINITION Plasmodium reichenowi (A type allele). ACCESSION No information KEYWORDS No information. SOURCE Plasmodium reichenowi (A type allele). ORGANISM Plasmodium reichenowi (A type allele). REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: Z25819 ID PRSSRRNA standard; RNA; INV; 2066 BP. XX AC Z25819; XX DT 01-SEP-1993 (Rel. 36, Created) DT 01-SEP-1993 (Rel. 36, Last updated, Version 1) XX DE P.reichenowi small subunit rRNA (from A-type allele) (partial) XX KW ribosomal RNA; small subunit ribosomal RNA. XX OS Plasmodium reichenowi OC Eukaryota; Animalia; Protozoa; Microspora; Microsporea; OC Microsporida; Haemosporina; Plasmodiidae. XX RN [1] RP 1-2066 RA Thomas A.W., Dubbeld M., Mons B., Narum D., Waters A.P.; RT "The small sub-unit type A ribosomal sequence of the chimpanzee RT malaria Plasmodium reichenowi is phylogenetically RT indistinguishable from the Plasmodium falciparum equivalent"; RL Unpublished. XX RN [2] RP 1-2066 RA Thomas A.W.; RT ; RL Submitted (31-AUG-1993) on tape to the EMBL Data Library by: RL Thomas A. W., Molecular Biological Laboratories-TNO, Chronic and RL Infectious Diseases, 2280 HV Rijswijk, The Netherlands XX FH Key Location/Qualifiers FH FT source 1..2066 FT /organism="Plasmodium reichenowi" FT /clone="pr317" FT rRNA <1..>2066 FT /partial FT /product="small subunit rRNA (from A-type allele)" XX SQ Sequence 2066 BP; 635 A; 318 C; 418 G; 695 T; 0 other; BASE COUNT 635 a 318 c 418 g 695 t 3837 others ORIGIN 1 |~~~~~~~~~ ~~~~~AACCU GGU(UGA)UC UU|GCCAGU- A-GUCA-UAU --GCUUGUCU 61 CAAA|-GAUU AA-GCCAUGC A-AGUGA-AA GU|------- |--------- ----[----- 121 ---------- --------au auauauauuu ---------- -uaua-ugua gaa]------ 181 -----|---A CU|G-CGAA- CGGCU-CAUU AAAA-cagu- uau-aguc-- ----uacuug 241 acau<----- ---------- ---------- ---------- ---------- ----uuuuau 301 u>AUAAGG-A UAACUACGG( -A-AAAG)CU GUAGC-UAA- UACUUG---- ---------- 361 ---------- ---------- ---------- -- -guaucaauc -ga|guuucu ga|--CCU-A UCA--GCUUU U-GAUGUUA- 1141 GG(-GUAUUG G)CCU-AACA U-|GGCUA-U GAC|GGGU-A A-CGGG|GAA -U-(UAGA-) 1201 GUU-CGAUU- CCG|GAGAGG G-AGCC(U-G AGAAAU)AGC UACC-ACAUC (UAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GU- AAAUU-ACCC -AAUUCU-A( ---aag--)A 1321 AGAG-A-GGU -|A|GUGACA AGAA-AU--- ---------- ---------- ---------- 1381 -----|---- ---------- ---------- ---------- ---------- ---------- 1441 --------AA CAAUGCAAG- -GCCA(---- --auuuu)UG GU-UU-UGUA A-UUGGAAU- 1501 ------GGUG ----GGAAUU -UAAA--ACC U-----UC-C C-AGA-GUAA C---->AAUU 1561 GGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCCAA 1621 U-AGCGUA|U AUUAA--AAU UGUUG-CAG| UUA--AAACG CUCGUAGUUG |--------- 1681 ---------- ---------- ---------- ---------- ---------- -|-------< 1741 aauuucaaag a-a-ucgaua uuuuauugua acuauau-ua ggggaa-cua uu-uuagcuu 1801 cg-cg---cu uu-------- ---------- --------aa uacgcuu--c cu-cuauuau 1861 uauguucuuu a-aauaacaa agauucu-uu uua------- ----aaauc- cccacuuu-- 1921 -----gcuuu uaugc----- -uuuuugggg auuu------ ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- --UGUUACUU UG-AGUA--A 2461 AUUAGAGUGU UC-AA-AG-C AAACaguua- ---------- ---------- ------aagc 2521 auuuuacugU GUU--U--GA AUACUA-UAG CAUGGAA|UA -ACAAAA-UU -GAACaGGCU 2581 ga-------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- -----aa-uu uuuu|guu-c 2821 -uu-uuuucu -ua-uu---- --------uu GGC-UUaGUU A--CGAUUAG UA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGAG|UAGC U--------- 3001 --UGGGGACA UU|--CGUAU UCGGAUG-UC -AGAG(GU-G AAA---)UUC U-UAGA-U-U 3061 UUCUG-GAG- A-CGAACA-A CUGC(-GAAA )--GC|A--- UUUGUC-UA| AA-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUA ---CUUCCAU -UAA-U|CA- A-GAACGAAA 3301 GUUAAGGGA- GUGAAGACG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CGUAA|UCU UA--ACC-AU AAACUAUGCC GAC|UA|--- 3421 --GGUGU-UG GAU-G-A--- ----(----- ---------) aaguguuaaa aa---uaaa- 3481 --agucau-c u----(uucg --)----agg uga-cuuuua --gauu-gcu ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------U C-CU-UCA-G -U-ACCuu-- ---------- ----auGA(- 3661 GAAA-)UCa- -AAGUC-uuu gGGU|-U|C- UGGGGCGAGU AU--UC-GC( --GCAA-)GC 3721 GAG-AAAGUU -AAAA--GAA -UUG|AC-GG -AA-GGGCA- -CCAC-CAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --C-GU|-GG 4021 AGCUUGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--GAA ACUCACUAGU UU[aag-aca 4081 agag-uagga uu-----gac agg(uuaaua g-c)------ ucuuu----- cuu-gauu-u 4141 cuugga---- -]-------- |--------- ---------- ---------- ---------- 4201 ---------- ---|UG-GU- GAU-G-CAUG |GCC|GU-UU UUA|GUUUG- U|GAA(UAUG 4261 A-)UUUGUC- -UGG(UU-AA UU)CCGAUA- AC-GAACGAG AUCUU-AA|- ---------- 4321 ---------- ---[CCU-GC UAAUUAGcgg uaaguacgcu auauucuuaa uuga-aauug 4381 aauauaggua auuau-acau ----uuauuc agu-gaucaa auuaggauau u(uuuauuaa 4441 --)aauaucc uuuuccc--- ---------- ---------- ---------- ---------- 4501 -----uguuc uacuaauaau uu-------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- gu---uuuuu acucuauuuc 4621 ucucuucuuu uaagaaugu- ----acuugc uugauug--- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- -----uaaag CU-------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------U CUUAGAGG]- --|------- ---------- AACA-UUG-U -G-U(----- 5041 --GUCUA-)A CACA-A-GGA AGUU-UAAGG CAACAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UG A|UGUC|CUU 5221 A-G-A-UGAA CUAG-GCUGC A-CGCGUGCU ACACU--G-A UAUAU----- ---------- 5281 ---------- -----[auaa cgaguua--- ---------- -----uuaa- aaa---uaug 5341 cauuuauuug uauc-----( --uuu)---- -gaugcuuau auuuugcaua ---------c 5401 uuuuccu-cc gcc(gaaa-) ggcgu----a gguaaucuuu aucaau]--- ---------- 5461 -------AUA UAU-C-G--- UGAU-G-GGG AUAGAUUAU( UGCAAUUA)U UAAUCUUG-A 5521 ACGAGG-AAU G--CCUAGUA AG-CAU-GAU (-UCAUCAG- )AUUGU-G-C -UGACUACG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUCC-U-A CC-GAU--UG AA-AGAUau- 5641 gau-gaau-- ugu-uugga- caag-aaaa- augg-aau-- ---------- ---------- 5701 -------(ua u-----)--- ---------- ---------- ---------- --au-ucu-- 5761 uuuuuu-ucu -ggaa-|aaa -ccguaaauc cu-AUC-U-U UUAA-AGGAA GG-AGAA-G- 5821 UCGUAACAAG GU-------- -----U-U-C Cnnnnn(nnn n)nnnnnnnn nnnnnnn--- 5881 --nnn~~~~~ ~~~~~~~~|| ||| // LOCUS P.viva.A.1 5903 bp RNA RNA 11-JAN-191 DEFINITION Plasmodium vivax. ACCESSION No information KEYWORDS No information. SOURCE Plasmodium vivax. ORGANISM Plasmodium vivax. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: X13926 LOCUS X13926 1943 bp UNA 15-SEP-1989 DEFINITION Plasmodium vivax small subunit (SSU) rRNA gene. ACCESSION X13926 REFERENCE 1 (bases 1 to 1943) AUTHORS Waters,A.P. TITLE ; JOURNAL Unpublished (1989) see COMMENT for author address STANDARD unannotated staff_entry REFERENCE 2 (bases 341 to 1943) AUTHORS Waters,A.P. and McCutchan,T.F. TITLE Partial sequence of the asexually expressed SSU rRNA gene from plasmodium vivax JOURNAL Nucleic Acids Res. 17, 2135-2135 (1989) STANDARD unannotated staff_entry BASE COUNT 591 a 314 c 409 g 629 t ORIGIN BASE COUNT 481 a 269 c 337 g 521 t 4295 others ORIGIN 1 |~~~~~~~~~ ~~~~~AACCU GGU(UGA)UC UU|GCCAGU- A-GUCA-UAU --GCUUGUCU 61 CAAA|-GAUU AA-GCCAUGC A-AGUGA-AA GU|------- |--------- ----[----- 121 ---------- --------au augcauauuu ---------- -uaua-ugua gga]------ 181 -----|---A CU|C-GCAA- CGGCU-CAUU AAAA-cagu- uau-aauc-- ----uacuug 241 acau<----- ---------- ---------- ---------- ---------- ----uuuuuc 301 u>AUAAGG-A UAACUACGG( -A-AAAG)CU GUAGC-UAA- UACUUG---- ---------- 361 ---------- ---------- ---------- -- -guaucaauc -ga|guu-cu ga|--CCU-A UCA--GCUUU U-GAUGUUA- 1141 GG(-GUAUUG G)CCU-AACA U-|GGCUA-U GAC|GGGU-A A-CGGG|GAA -U-(UAGA-) 1201 GUU-CGAUU- CCG|GAGAGG G-AGCC(U-G AGAAAU)AGC UACC-ACAUC (UAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GU- AAAUU-ACCC -AAUUCU-A( ---aag--)A 1321 AGAG-A-GGU -|A|GUGACA AGAA-AU--- ---------- ---------- ---------- 1381 -----|---- ---------- ---------- ---------- ---------- ---------- 1441 --------AA CAAUACAAG- -GCCA(---- ---auc-)UG GC-UU-UGUA A-UUGGAAU- 1501 ------GAUG ----GGAAUU -UAAA--ACC U-----UC-C C-A-A-AACU C---->AAUU 1561 GGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCCAA 1621 U-AGCGUA|U AUUAA--AAU UGUUG-CAG| UUA--AAACG CUCGUAGUUG |--------- 1681 ---------- ---------- ---------- ---------- ---------- -|-------< 1741 aauuucaaag a-a-ucgaua uuuuaagcaa cgcuucu-ag cuuaau-cca ca--uaacug 1801 au-ac---uu c-----g-ua ucgacuu--- --------ug ugcgcauu-u ug-cuauuau 1861 -guguucuuu u-aauuaaaa ugauucu-uu uua------- ----aggacu uucuuu---- 1921 -----gcuuc g--gc----- ---uuggaag uccu------ ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- --UGUUACUU UG-AGUA--A 2461 AUUAGAGUGU UC-AA-AG-C AAACagaua- ---------- ---------- ------uagc 2521 au--ugcgcC GUU--U--GA AUACUA-CAG CAUGGAA|UA -ACAAA--UU -GAACaAGUC 2581 ag-------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- -----aa-uu u-uu|cuu-c 2821 -uu-uuuucu -ua-uu---- --------uu GGC-UUaGUU A--CGAUUAA UA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGAG|UAGC U--------- 3001 --UGGGGGCA UU|--UGUAU UCAGAUG-UC -AGAG(GU-G AAA---)UUC U-UAGA-U-U 3061 UUCUG-GAG- A-CAAACA-A CUGC(-GAAA )--GC|A--- UUUGCC-UA| AA-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUA ---CUUCCAU -UAA-U|CA- A-GAACGAAA 3301 GUUAAGGGA- GUGAAGACG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CGUAA|UCU UA--ACC-AU AAACUAUGCC GAC|UA|--- 3421 --GGCUU-UG GAU-G-A--- ----(----- ---------) aagauuuuaa aa---uaag- 3481 --aauuuu-c uc---(uucg --)---gagu uua-uucuua --gauu-gcu ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------U C-CU-UCA-G -U-GCCuu-- ---------- ----auGA(- 3661 GAAA-)UCa- -AAGUC-uuu gGGU|-U|C- UGGGGCGAGU AU--UC-GC( --GCAA-)GC 3721 GAG-AAAGUU -AAAA--GAA -UU-|-C-GG -AA-GGGCA- -CCAC-CAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --C-GU|-GG 4021 AGCUUGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--AAA ACUCACUAGU UU[aag-aca 4081 agag-uagga uu-----gac aga(uuaaua g-c)------ ucuuu----- cuu-gauu-u 4141 cuugga---- -]-------- |--------- ---------- ---------- ---------- 4201 ---------- ---|UG-GU- GAU-G-CAUG |GCC|GU-UU UUA|GUUCG- U|GAA(UAUG 4261 A-)UUUGUC- -UGG(UU-AA UU)CCGAUA- AC-GAACGAG AUCUU-AA|- ---------- 4321 ---------- ---[CCU-GC UAAUUAGcgg caaauacgau auauucuuac gugg-gacug 4381 aauucgguug auuu--gcuu ----acuuug aag-aa-aau auuggga-aa c(guaaca-- 4441 --)guu-ucc cuuuccc--- ---------- ---------- ---------- ---------- 4501 -----uuuuc uacuu-aguu c--------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- gc---uuuuc auacuguuuc 4621 --uuuucgcg uaagaaugu- ----auuugc uugauug--- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- -----uaaag CU-------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------u ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ---~~~~~~~ ~|~~~~|~~~ 5221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5281 ~~~~-~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5461 ~~~~~~~~~~ ~~~~~-~~-- ~~~~-~-~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5521 ~~~~~~~~~~ ~-~~~~~~~~ ~~~~~~~~~~ ~-~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5581 ~~~~~~~~~~ ~~|~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5641 ~~~-~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5701 ~~~~~~-~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~-~ 5761 ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5821 ~~~~~~~~~~ ~~-------- -----~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5881 ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS P.viva.A.2 5903 bp RNA RNA 11-JAN-191 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: U07367 Same as sequence sent by John Rogers on March 6th 1995 LOCUS PVU07367 2063 bp DNA INV 22-JUN-1994 DEFINITION Plasmodium vivax El Salvador asexual blood stage small subunit rRNA gene. ACCESSION U07367 KEYWORDS . SOURCE Plasmodium vivax ORGANISM Plasmodium vivax Eucaryotae; Protozoa; Apicomplexa; Sporozoa; Coccidia; Eucoccidiida; Haemosporina; Plasmodium. REFERENCE 1 (bases 1 to 2063) AUTHORS Li,J., McConkey,G., Wirtz,R., Sattabongkot,J. and McCutchan,T.F. TITLE Transition of Plasmodium vivax ribosome types corresponds to sporozoite differentiation in the mosquito BASE COUNT 614 a 350 c 441 g 658 t 3840 others ORIGIN 1 |~~~~~~~~~ ~~~~~AACCU GGU(UGA)UC UU|GCCAGU- A-GUCA-UAU --GCUUGUCU 61 CAAA|-GAUU AA-GCCAUGC A-AGUGA-AA GU|------- |--------- ----[----- 121 ---------- --------au augcauauuu ---------- -uaua-ugua gaa]------ 181 -----|---A CU|G-CGAA- CGGCU-CAUU AAAA-cagu- uau-aauc-- ----uacuug 241 acau<----- ---------- ---------- ---------- ---------- ----uuuuuc 301 u>AUAAGG-A UAACUACGG( -A-AAAG)CU GUAGC-UAA- UACUUG---- ---------- 361 ---------- ---------- ---------- -- -guaucaauc -ga|guuucu ga|--CCU-A UCA--GCUUU U-GAUGUUA- 1141 GG(-GUAUUG G)CCU-AACA U-|GGCUA-U GAC|GGGU-A A-CGGG|GAA -U-(UAGA-) 1201 GUU-CGAUU- CCG|GAGAGG G-AGCC(U-G AGAAAU)AGC UACC-ACAUC (UAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GU- AAAUU-ACCC -AAUUCU-A( ---aag--)A 1321 AGAG-A-GGU -|A|GUGACA AGAA-AU--- ---------- ---------- ---------- 1381 -----|---- ---------- ---------- ---------- ---------- ---------- 1441 --------AA CAAUACAAG- -GCCA(---- ---auc-)UG GC-UU-UGUA A-UUGGAAU- 1501 ------GAUG ----GGAAUU -UAAA--ACC U-----UC-C C-A-A-AACU C---->AAUU 1561 GGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCCAA 1621 U-AGCGUA|U AUUAA--AAU UGUUG-CAG| UUA--AAACG CUCGUAGUUG |--------- 1681 ---------- ---------- ---------- ---------- ---------- -|-------< 1741 aauuucaaag a-a-ucgaua uuuuaagcaa cgcuucu-ag cuuaau-cca ca--uaacug 1801 au-ac---uu c-----g-ua ucgacuu--- --------ug ugcgcauu-u ug-cuauuau 1861 -guguucuuu u-aauuaaaa ugauucu-uu uua------- ----aggacu uucuuu---- 1921 -----gcuuc g--gc----- ---uuggaag uccu------ ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- --UGUUACUU UG-AGUA--A 2461 AUUAGAGUGU UC-AA-AG-C AAACagaua- ---------- ---------- ------uagc 2521 au---ugcgC GUU--U--GA AUACUA-CAG CAUGGAA|UA -ACAAA--UU -GAACaAGUC 2581 ag-------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- -----aa-uu u-uu|guu-c 2821 -uu-uuuucu -ua-uu---- --------uu GGC-UUaGUU A--CGAUUAA UA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGAG|UAGC U--------- 3001 --UGGGGGCA UU|--UGUAU UCAGAUG-UC -AGAG(GU-G AAA---)UUC U-UAGA-U-U 3061 UUCUG-GAG- A-CAAACA-A CUGC(-GAAA )--GC|A--- UUUGCC-UA| AA-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUA ---CUUCCAU -UAA-U|CA- A-GAACGAAA 3301 GUUAAGGGA- GUGAAGACG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CGUAA|UCU UA--ACC-AU AAACUAUGCC GAC|UA|--- 3421 --GGCUU-UG GAU-G-A--- ----(----- ---------) aagauuuuaa aa---uaag- 3481 --aauuuu-c uc---(uucg --)---gagu uua-uucuua --gauu-gcu ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------U C-CU-UCA-G -U-GCCuu-- ---------- ----auGA(- 3661 GAAA-)UCa- -AAGUC-uuu gGGU|-U|C- UGGGGCGAGU AU--UC-GC( --GCAA-)GC 3721 GAG-AAAGUU -AAAA--GAA -UUG|AC-GG -AA-GGGCA- -CCAC-CAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --C-GU|-GG 4021 AGCUUGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--AAA ACUCACUAGU UU[aag-aca 4081 agag-uagga uu-----gac aga(uuaaua g-c)------ ucuuu----- cuu-gauu-u 4141 cuugga---- -]-------- |--------- ---------- ---------- ---------- 4201 ---------- ---|UG-GU- GAU-G-CAUG |GCC|GU-UU UUA|GUUCG- U|GAA(UAUG 4261 A-)UUUGUC- -UGG(UU-AA UU)CCGAUA- AC-GAACGAG AUCUU-AA|- ---------- 4321 ---------- ---[CCU-GC UAAUUAGcgg caaauacgac auauucuuac gugg-gacug 4381 aauucgguug auuu--gcuu ----acuuug aag-aa-aau auuggga-ua c(guaaca-- 4441 --)guu-ucc cuuuccc--- ---------- ---------- ---------- ---------- 4501 -----uuuuc uacuu-aguu c--------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- gc---uuuuc auacuguuuc 4621 -uuuuucgcg uaagaaugu- ----auuugc uugauug--- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- -----uaaag CU-------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------U CUUAGAGG]- --|------- ---------- AACG-AUG-U -G-U(----- 5041 --GUCUA-)A CACA-A-GGA AGUU-UAAGG CAACAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UG A|UGUC|CUU 5221 A-G-A-UGAA CUAG-GCUGC A-CGCGUGCU ACACU--G-A UAUGU----- ---------- 5281 ---------- -----[auaa cgaguua--- ---------- -----uuaa- aau---uacg 5341 auu------c ag-------( -cuug)---- ---cug---- ---uuucgua ---------u 5401 uuuuccu-cc acu(gaaa-) agugu----a gguaaucuuu aucagu]--- ---------- 5461 -------ACA UAU-C-G--- UGAU-G-GGG AUAGAUUGU( UGCAAUUA)U UAAUCUUG-A 5521 ACGAGG-AAU G--CCUAGUA AG-CAU-GAU (-UCAUCAG- )AUUGU-G-C -UGACUACG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUCC-U-A CC-GAU--UG AA-AGAUau- 5641 gau-gaau-- ugu-uugga- caag-aaga- aggg-ggau- ---------- ---------- 5701 -------(ua u-----)--- ---------- ---------- ---------- --au-cuc-- 5761 cuuuuu-ucu -ggaa-|aaa -ccguaaauc cu-AUC-U-U UUAA-AGGAA GG-AGAA-G- 5821 UCGUAACAAG GU-------- -----U-U-C CGUAG-(UGA A)CCUGCGGA AGGAUCA--- 5881 --UUA~~~~~ ~~~~~~~~|| ||| // LOCUS P.viva.A.3 5903 bp RNA RNA 11-JAN-191 DEFINITION Plasmodium vivax Sal 1. ACCESSION No information KEYWORDS No information. SOURCE Plasmodium vivax Sal 1. ORGANISM Plasmodium vivax Sal 1. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: U03079 LOCUS PVU03079 2064 bp DNA INV 23-NOV-1993 DEFINITION Plasmodium vivax Sal 1 blood stage small subunit rRNA gene. ACCESSION U03079 KEYWORDS . SOURCE Plasmodium vivax ORGANISM Plasmodium vivax Eucaryotae; Protozoa; Apicomplexa; Sporozoa; Coccidia; Eucoccidiida; Haemosporina; Plasmodium. REFERENCE 1 (bases 1 to 2064) AUTHORS Qari,S.H., Goldman,I.F., Collins,W.E. and Lal,A.A. TITLE Asexual and sporozoite stage specific small subunit ribosomal RNA genes of Plasmodium vivax JOURNAL Unpublished STANDARD full automatic REFERENCE 2 (bases 1 to 2064) AUTHORS Goldman,I.,F. TITLE Direct Submission JOURNAL Submitted (02-NOV-1993) Goldman I. F., Centers for Disease Control and Prevention, Malaria Branch, 4770 Buford Hwy, Chamblee, GA 30431 USA STANDARD full automatic FEATURES Location/Qualifiers source 1..2064 /strain="Sal 1" /organism="Plasmodium vivax" /specific_host="Homo sapiens" /germline /macronuclear /dev_stage="blood stage" BASE COUNT 615 a 349 c 442 g 658 t ORIGIN BASE COUNT 615 a 349 c 442 g 658 t 3839 others ORIGIN 1 |~~~~~~~~~ ~~~~~AACCU GGU(UGA)UC UU|GCCAGU- A-GUCA-UAU --GCUUGUCU 61 CAAA|-GAUU AA-GCCAUGC A-AGUGA-AA GU|------- |--------- ----[----- 121 ---------- --------au augcauauuu ---------- -uaua-ugua gaa]------ 181 -----|---A CU|G-CGAA- CGGCU-CAUU AAAA-cagu- uau-aauc-- ----uacuug 241 acau<----- ---------- ---------- ---------- ---------- ----uuuuuc 301 u>AUAAGG-A UAACUACGG( -A-AAAG)CU GUAGC-UAA- UACUUG---- ---------- 361 ---------- ---------- ---------- -- -guaucaauc -ga|guuucu ga|--CCU-A UCA--GCUUU U-GAUGUUA- 1141 GG(-GUAUUG G)CCU-AACA U-|GGCUA-U GAC|GGGU-A A-CGGG|GAA -U-(UAGA-) 1201 GUU-CGAUU- CCG|GAGAGG G-AGCC(U-G AGAAAU)AGC UACC-ACAUC (UAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GU- AAAUU-ACCC -AAUUCU-A( ---aag--)A 1321 AGAG-A-GGU -|A|GUGACA AGAA-AU--- ---------- ---------- ---------- 1381 -----|---- ---------- ---------- ---------- ---------- ---------- 1441 --------AA CAAUACAAG- -GCCA(---- ---auc-)UG GC-UU-UGUA A-UUGGAAU- 1501 ------GAUG ----GGAAUU -UAAA--ACC U-----UC-C C-A-A-AACU C---->AAUU 1561 GGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCCAA 1621 U-AGCGUA|U AUUAA--AAU UGUUG-CAG| UUA--AAACG CUCGUAGUUG |--------- 1681 ---------- ---------- ---------- ---------- ---------- -|-------< 1741 aauuucaaag a-a-ucgaua uuuuaagcaa cgcuucu-ag cuuaau-cca ca--uaacug 1801 au-ac---uu c-----g-ua ucgacuu--- --------ug ugcgcauu-u ug-cuauuau 1861 -guguucuuu u-aauuaaaa ugauucu-uu uua------- ----aggacu uucuuu---- 1921 -----gcuuc g--gc----- ---uuggaag uccu------ ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- --UGUUACUU UG-AGUA--A 2461 AUUAGAGUGU UC-AA-AG-C AAACagaua- ---------- ---------- ------uagc 2521 au---ugcgC GUU--U--GA AUACUA-CAG CAUGGAA|UA -ACAAAA-UU -GAACaAGUC 2581 ag-------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- -----aa-uu u--u|guu-c 2821 -uu-uuuucu -ua-uu---- --------uu GGC-UUaGUU A--CGAUUAA UA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGAG|UAGC U--------- 3001 --UGGGGGCA UU|--UGUAU UCAGAUG-UC -AGAG(GU-G AAA---)UUC U-UAGA-U-U 3061 UUCUG-GAG- A-CAAACA-A CUGC(-GAAA )--GC|A--- UUUGCC-UA| AA-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUA ---CUUCCAU -UAA-U|CA- A-GAACGAAA 3301 GUUAAGGGA- GUGAAGACG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CGUAA|UCU UA--ACC-AU AAACUAUGCC GAC|UA|--- 3421 --GGCUU-UG GAU-G-A--- ----(----- ---------) aagauuuuaa aa---uaag- 3481 --aauuuu-c uc---(uucg --)---gagu uua-uucuua --gauu-gcu ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------U C-CU-UCA-G -U-GCCuu-- ---------- ----auGA(- 3661 GAAA-)UCa- -AAGUC-uuu gGGU|-U|C- UGGGGCGAGU AU--UC-GC( --GCAA-)GC 3721 GAG-AAAGUU -AAAA--GAA -UUG|AC-GG -AA-GGGCA- -CCAC-CAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --C-GU|-GG 4021 AGCUUGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--AAA ACUCACUAGU UU[aag-aca 4081 agag-uagga uu-----gac aga(uuaaua g-c)------ ucuuu----- cuu-gauu-u 4141 cuugga---- -]-------- |--------- ---------- ---------- ---------- 4201 ---------- ---|UG-GU- GAU-G-CAUG |GCC|GU-UU UUA|GUUCG- U|GAA(UAUG 4261 A-)UUUGUC- -UGG(UU-AA UU)CCGAUA- AC-GAACGAG AUCUU-AA|- ---------- 4321 ---------- ---[CCU-GC UAAUUAGcgg caaauacgau auauucuuac gugg-gacug 4381 aauucgguug auuu--gcuu ----acuucg aag-aa-aau auuggga-ua c(guaaca-- 4441 --)guu-ucc cuuuccc--- ---------- ---------- ---------- ---------- 4501 -----uuuuc uacuu-aguu c--------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- gc---uuuuc auacuguuuc 4621 -uuuuucgcg uaagaaugu- ----auuugc uugauug--- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- -----uaaag CU-------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------U CUUAGAGG]- --|------- ---------- AACG-AUG-U -G-U(----- 5041 --GCCUA-)A CACA-A-GGA AGUU-UAAGG CAACAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UG A|UGUC|CUU 5221 A-G-A-UGAA CUAG-GCUGC A-CGCGUGCU ACACU--G-A UAUGU----- ---------- 5281 ---------- -----[auaa cgaguua--- ---------- -----uuaa- aau---uacg 5341 auu------c ag-------( -cuug)---- ---cug---- ---uuucgua ---------u 5401 uuuuccu-cc acu(gaaa-) agugu----a gguaaucuuu aucagu]--- ---------- 5461 -------ACA UAU-C-G--- UGAU-G-GGG AUAGAUUAU( UGCAAUUA)U UAAUCUUG-A 5521 ACGAGG-AAU G--CCUGGUA AG-CAU-GAU (-UCAUCAG- )AUUGU-G-C -UGACUACG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUCC-U-A CC-GAU--UG AA-AGAUau- 5641 gau-gaau-- ugu-uugga- caag-aaga- aggg-ggau- ---------- ---------- 5701 -------(ua u-----)--- ---------- ---------- ---------- --au-cuc-- 5761 cuuuuu-ucu -ggaa-|aaa -ccguaaauc cu-AUC-U-U UUAA-AGGAA GG-AGAA-G- 5821 UCGUAACAAG GU-------- -----U-U-C CGUAGG(UGA A)CCUGCGGA AGGAUCA--- 5881 --UUA~~~~~ ~~~~~~~~|| ||| // LOCUS P.viva.A.4 5903 bp RNA RNA 11-JAN-191 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: U93233 K1294 (THAI ISOLATE) P.vivax A gene 1.883 kb BASE COUNT 559 a 316 c 406 g 602 t 4020 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~(~~~)~~ ~~|~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~|~~~~~~~ |~~~~~~~~~ ~~~~[~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~]~~~~~~ 181 ~~~~~|~~~~ ~~|~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~<~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 ~>~~~~GG-A UAACUACGG( -A-AAAG)CU GUAGC-UAA- UACUUG---- ---------- 361 ---------- ---------- ---------- -- -guaucaauc -ga|guuucu ga|--CCU-A UCA--GCUUU U-GAUGUUA- 1141 GG(-GUAUUG G)CCU-AACA U-|GGCUA-U GAC|GGGU-A A-CGGG|GAA -U-(UAGA-) 1201 GUU-CGAUU- CCG|GAGAGG G-AGCC(U-G AGAAAU)AGC UACC-ACAUC (UAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GU- AAAUU-ACCC -AAUUCU-A( ---aag--)A 1321 AGAG-A-GGU -|A|GUGACA AGAA-AU--- ---------- ---------- ---------- 1381 -----|---- ---------- ---------- ---------- ---------- ---------- 1441 --------AA CAAUACAAG- -GCCA(---- ---auc-)UG GC-UU-UGUA A-UUGGAAU- 1501 ------GAUG ----GGAAUU -UAAA--ACC U-----UC-C C-A-a-AACU C---->AAUU 1561 GGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCCAA 1621 U-AGCGUA|U AUUAA--AAU UGUUG-CAG| UUA--AAACG CUCGUAGUUG |--------- 1681 ---------- ---------- ---------- ---------- ---------- -|-------< 1741 aauuucaaag a-a-ucgaua uuuuaagcaa cgcuucu-ag cuuaau-cca ca--uaacug 1801 au-ac---uu c-----g-ua ucgacuu--- --------ug ugcgcauu-u ug-cuauuau 1861 -guguucuuu u-aauuaaaa ugauucc-uu uua------- ----aggacu uucuuu---- 1921 -----gcuuu g--gc----- ---uuggaag uccu------ ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- --UGUUACUU UG-AGUA--A 2461 AUUAGAGUGU UC-AA-AG-C AAACagaua- ---------- ---------- ------uagc 2521 au---ugcgC GUU--U--GA AUACUA-CAG CAUGGAA|UA -ACAAAA-UU -GAACaAGUC 2581 ag-------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- -----aa-uu u--u|guu-c 2821 -uu-uuuucu -ua-uu---- --------uu GGC-UUaGUU A--CGAUUAA UA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGAG|UAGC U--------- 3001 --UGGGGGCA UU|--UGUAU UCAGAUG-UC -AGAG(GU-G AAA---)UUC U-UAGA-U-U 3061 UUCUG-GAG- A-CAAACA-A CUGC(-GAAA )--GC|A--- UUUGCC-UA| AA-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUA ---CUUCCAU -UAA-U|CA- A-GAACGAAA 3301 GUUAAGGGA- GUGAAGACG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CGUAA|UCU UA--ACC-AU AAACUAUGCC GAC|UA|--- 3421 --GGCUU-UG GAU-G-A--- ----(----- ---------) aagauuuuaa aa---uaag- 3481 --aauuuu-c uc---(uucg --)---gagu uua-uucuua --gauu-gcu ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------U C-CU-UCA-G -U-GCCuu-- ---------- ----auGA(- 3661 GAAA-)UCa- -AAGUC-uuu gGGU|-U|C- UGGGGUGAGU AU--UC-GC( --GCAA-)GC 3721 GAG-AAAGUU -AAAA--GAA -UUG|AC-GG -AA-GGGCA- -CCAC-CAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --C-GU|-GG 4021 AGCUUGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--AAA ACUCACUAGU UU[aag-aca 4081 agag-uagga uu-----gac aga(uuaaua g-c)------ ucuuu----- cuu-gauu-u 4141 cuugga---- -]-------- |--------- ---------- ---------- ---------- 4201 ---------- ---|UG-GU- GAU-G-CAUG |GCC|GU-UU UUA|GUUCG- U|GAA(UAUG 4261 A-)UUUGUC- -UGG(UU-AA UU)CCGAUA- AC-GAACGAG AUCUU-AA|- ---------- 4321 ---------- ---[CCU-GC UAAUUAGcgg caaauacgau auauucuuac gugg-gacug 4381 aauucgguug auuu--gcuu ----acuuug aag-aa-aau auuggga-aa c-guaaca-- 4441 ---guu-ucc cuuuccc--- ---------- ---------- ---------- ---------- 4501 -----uuuuc uacuu-aguu c--------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- gc---uuuuc auacuguuuc 4621 -uuuuucgcg uaagaaugu- ----auuugc uugauug--- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- -----uaaag CU-------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------U CUUAGAGG]- ---------- ---------- AACG-AUG-U -G-U(----- 5041 --GUCUA-)A CACA-A-GGA AGUU-UAAGG CAACAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UG A|UGUC|CUU 5221 A-G-A-UGAA CUAG-GCUGC A-CGCGUGCU ACACU--G-A UAUGU----- ---------- 5281 ---------- -----[auaa cgaguua--- ---------- -----uuaa- aau---uacg 5341 auu------c ag-------( -cuug)---- ---cug---- ---uuucgua ---------u 5401 uuuuccu-cc acu(gaaa-) agugu----a gguaaucuuu aucagu]--- ---------- 5461 -------ACA UAU-C-G--- UGAU-G-GGG AUAGAUUAU( UGCAAUUA)U UAAUCUUG-A 5521 ACGAGG-AAU G--CCUAGUA AG-CAU-GAU (-UCAUCAG- )AUUGU-G-C -UGACUACG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUCC-U-A CC-GAU--UG AA-AGAUau- 5641 gau-gaau-- ugu-uugga- caag-aaaa- aggg-ggau- ---------- ---------- 5701 -------(ua u-----)--- ---------- ---------- ---------- --au-cuc-- 5761 cuuuuu-ucu -ggaa-|aaa -ccguaaauc cu-AUC-U-U UUAA-AGGAA GG-AGAA-G- 5821 UC~~~~~~~~ ~~-------- -----~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5881 ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS +++S 5903 bp RNA RNA 25-JAN-1995 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: DIVIDER BASE COUNT 0 a 0 c 0 g 0 t 5903 others ORIGIN 1 |......... .......... .......... .......... .-........ .......... 61 .......... .......... .-........ ..|....... |......... .......... 121 .......... .......... .......... .......... .....-.... .......... 181 .......... ..|....... .......... .......... .......... .......... 241 .......... .......... .......... .......... .......... .......... 301 .......... .......... .......... .......... .......... .......... 361 .......... .......... .......... .......... .......... .......... 421 .......... .......... .......... .......... .......... .......... 481 .......... .......... .......... .......... .......... .......... 541 .......... .......... .......... .......... .......... .......... 601 .......... .......... .......... .......... .......... .......... 661 .......... .......... .......... .......... .......... .......... 721 .......... .......... .......... .......... .......... .......... 781 .......... .......... .......... .......... .......... .......... 841 .......... .......... .......... .......... .......... .......... 901 .......... .......... .......... .......... .......... .......... 961 .......... .......... .......... .......... .......... .......... 1021 .......... .......... .......... .......... .......... .......... 1081 .......... .......... ...|...... .......... .......... .-........ 1141 .......... .......... .......... ...|...... .......... .......... 1201 .......... .......... .......... .......... ....-..... .....-.... 1261 .......... .........| .......... .......... .......... .......... 1321 .......... .|........ ....-..... .......... .......... .......... 1381 .....|.... .......... .......... .......... .......... .......... 1441 .......... .......... .......... .......... .......... .......... 1501 .......... .......... .......... .-----.... .......... .....>.... 1561 .......... .......... .......... .......... .......... ..-|...... 1621 ........|. .......... .........| .......... .......... .......... 1681 .......... .......... .......... .......... .......... .|........ 1741 .......... .-........ .......... .......... ......-... .......... 1801 ..-....... ..-....-.. .......... .......... .......... .......... 1861 .......... .-........ .......... .......... .......... .......... 1921 .......... .......... .......... .......... .......... .......... 1981 .......... .......... .......... .......... .......... .......... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... .......... .......... .......... .......... .......... 2161 .......... .......... .......... .......... .......... .......... 2221 .......... .......... .......... .......... .......... .......... 2281 .......... .......... .......... .......... .......... .......... 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... ....-..... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... .......... 2701 .......... .......... .......... .......... .......... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ..---..... 2881 .......... .......... .......... .......... .......... .......... 2941 .......... .......... .......... .......... .....|.... .......... 3001 .......... ...--..... .......... .......... .......... .......... 3061 .......... .......... .......... .....|.... .........| ..-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------... .......... ....-.|... .......... 3301 .......... .......... ....------ ---------- ---------- ---------- 3361 ---------. .......... .......... .......... .......... ...|...... 3421 .......... .......... .......... .......... .......... .......... 3481 .......... .......... .......... .......... .......... .......... 3541 .......... .......... .......... .......... .......... .......... 3601 .......... .......... .......... .......... .......... .......... 3661 .......... .......... .......|.. .......... .......... .......... 3721 .......... -......... ....|..... .......... .......... ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --....|... 4021 ........|. .......... .......-.. .......... .......... .......... 4081 .......... ..-----... .......... .-..--.... .....----- ...-...... 4141 .......... .]........ |......... .......... .......... .......... 4201 .......... ...|...... .......... ....|..... .........- .......... 4261 .-........ .......... .......... ..-....... .......... .......... 4321 .......... .......... .......... .......... .......... .......... 4381 .......... .......... .......... ...-...... .......... .......... 4441 --........ .......... .......... .......... .......... .......... 4501 .......... .......... .......... .......... .......... .......... 4561 .......... .......... .......... .......... .......... .......... 4621 .......... .......... .......... .......... .......... .......... 4681 .......... .......... .......... .......... .......... .......... 4741 .......... .......... .......... .......... .......... .......... 4801 .......... .......... .......... .......... .......... .......... 4861 .......... .......... .......... .......... .......... .......... 4921 .......... .......... .......... .......... .......... .......... 4981 .......... .......... .......... .......... .......... .......... 5041 .......... .......... .......... .......... ...------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ---....... .|....|... 5221 .......... .......... .......... .......... .......... .......... 5281 ....-..... .......... .......... .......... .......... .......... 5341 .......... .......... .......... .......... .......... .......... 5401 .......... .......... .......... .......... .......... .......... 5461 .......... .....-..-- ....-.-... .......... .......... .......... 5521 .......... .-........ .......... .-........ .......... .......... 5581 .......... ..|....... .......... .......... .......... .......... 5641 ...-.....- .......... .......... .......... .......... .......... 5701 ......-... .......... .......... .......... .......... ........-. 5761 .......... ......|... .......... .......... .......... .......... 5821 .......... .......... .......... .......... .......... .......... 5881 .......... ........|| ||| // LOCUS P.berg.S 5903 bp RNA RNA 03-JAN-1986 DEFINITION Plasmodium berghei C. ACCESSION No information KEYWORDS No information. SOURCE Plasmodium berghei C. ORGANISM Plasmodium berghei C. REFERENCE 1 (bases 1 to 2303) AUTHORS No information JOURNAL Sept 3 1986 STANDARD No information COMMENTS Organism information Culture collection: ? Sequence information (bases 1 to 5903) Corresponding GenBank entry: M19712 Phylo:Eukaryotes,Protozoan BASE COUNT 635 a 329 c 431 g 664 t 3844 others ORIGIN 1 |~~~~~~~~~ ~~~~~AACCU GGU(UGA)UC UU|GCCAGU- A-GUCA-UAU --GCUUGUCU 61 CAAA|-GAUU AA-GCCAUGC A-AGUGA-AA GU|------- |--------- ----[----- 121 ---------- --------au augcacau-- ---------- -uuau-ugca gaa]------ 181 -----|---A CU|G-CGAA- CGGCU-CAUU AAAA-cagu- uau-aauc-- ----uacuug 241 acau<----- ---------- ---------- ---------- ---------- -----uuuau 301 u>AUAAGG-A UAACUACGG( -A-AAAG)CU GUAGC-UAA- UACUUG---- ---------- 361 ---------- ---------- ---------- -- -guaucaauc -ga|guuucu ga|--CCU-A UCA--GCUUU U-GAUGUUA- 1141 GG(-GUAUUG A)CCU-AACA U-|GGCUU-U GAC|GGGU-A A-CGGG|GAA -U-(UAGA-) 1201 GUU-CGAUU- CCG|GAGAGG G-AGCC(U-G AGAAAU)AGC UACC-ACAUC (UAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GU- AAAUU-ACCC -AAUUCU-A( ---aau--)A 1321 AGAG-A-GGU -|A|GUGACA AGAA-AU--- ---------- ---------- ---------- 1381 -----|---- ---------- ---------- ---------- ---------- ---------- 1441 --------AA CAAUAUAAG- -GCCA(---- --aauuu)UG GU-UU-UAUA A-UUGGAAU- 1501 ------GAUG ----GGAAUU -UAAA--ACC U-----UC-C C-A-A-AAAU C---->A-UU 1561 GGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCCAA 1621 U-AGCGUA|U AUUAA--AAU UGUUG-CAG| UUA--AAACG CUCGUAGUUG |--------- 1681 ---------- ---------- ---------- ---------- ---------- -|-------< 1741 aacuucaagg g-uauaauua uuuuaa-gca a----cuc-- acuugg-aaa ---------- 1801 ---------- ------a-a- aucaug-a-- -cuu--cugu cacugc-uuu ua-----ucc 1861 uuguugcagu u-cuuuuaau acagggcccu uu-------- ----gagag- ccc------- 1921 ---------- --auuaauuu augacugggu uucu------ ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- --CGUUACUU UG-AGUA--A 2461 AUUAGAGUGU UU-AA-AG-C AAACagaua- ---------- ---------- ----aagcgu 2521 auuuuacugU GUU--U--GA AUACUA-UAG CAUGGAA|UA -ACAACA-UU -GAAUaGGUC 2581 aa-------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- -----aa-gu uuuu|gaaaa 2821 -ac-uuuucu -ua-uu---- --------uu GGC-UUaGAU A--CGAUUAA UA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGAG|UAGC U--------- 3001 --UGGGGGCA UU|--UGUAU UCAGAUG-UC -AGAG(GU-G AAA---)UUC U-UAGA-U-U 3061 UUCUG-GAG- A-CAAACA-A CUGC(-GAAA )--GC|A--- UUUGCC-UA| AA-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUA ---CUUCCAU -UAA-U|CA- A-GAACGAAA 3301 GUUAAGGGA- GUGAAGACG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CGUAA|UCU UA--ACC-AU AAACUAUGCC GAC|UA|--- 3421 --AGUGU-UG GAU-G-A--- ----(----- ---------) aaauuua--- -----uaaau 3481 a-aaacuauc uucu-(uuaa --)-aggagu agu-uuuuua --gau--gcu ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------U C-CU-UCA-G -U-ACCuu-- ---------- ----auGA(- 3661 GAAA-)UCa- -AAGUC-uuu gGGU|-U|C- UGGGGCGAGU AU--UC-GC( --GCAA-)GC 3721 GAG-AAAGUU -AAAA--GAA -UUG|AC-GG -AA-GGGCA- -CCAC-CAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --C-GU|-GG 4021 AGCUUGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--GAA ACUCACUAGU UU[aag-aca 4081 agag-uagga uu-----gac aga(uuaaua g-c)------ ucuuu----- cuu-gauu-u 4141 cuugga---- -]-------- |--------- ---------- ---------- ---------- 4201 ---------- ---|UG-GU- GAU-G-CAUG |GCC|GU-UU UUA|GUUCG- U|GAA(UAUG 4261 A-)UUUGUC- -UGG(UU-AA UU)CCGAUA- AC-GAACGAG AUCUU-AA|- ---------- 4321 ---------- ---[CCU-GC UAAUUAGcgg cgaguacucu auauccuuua uugg-gagau 4381 ugguuuugac guuuaug--- ---------- --------ug ggcauauuga uuaaucaauu 4441 --gguuuacc uuuugcucuu uuucauuaug a--------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------u ucuuucguuu acgacaugcc 4621 uuuuuucuag uaaggaugu- ----auucgc uuuauu---- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- -----uaaug CU-------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------U CUUAGAGG]- --|------- ---------- AACG-AUG-U -G-U(----- 5041 --GUCUA-)A CACA-A-GGA AGUU-UAAGG CAACAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UG A|UGUC|CUU 5221 A-G-A-UAUA CUAG-GCUGC A-CGCGUGCU ACACU--G-A UAUGU----- ---------- 5281 ---------- -----[aaaa cgagugc--- ---------- -----uuaaa uu----uaua 5341 u-cugugcuu aggu----g( -uuaa)---- agccuauguu ucaguauaua ---------u 5401 uuuuccu-cc acu(gaaa-) agugu----a gguaaucuuu aucaau]--- ---------- 5461 -------ACA UAU-C-G--- UGAU-G-GGG AUAGAUUAU( UGCAAUUA)U UAAUCUUG-A 5521 ACGAGG-AAU G--CCUAGUA AG-CAU-GAU (-UCAUCAG- )AUUGU-G-C -UGACUACG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUCC-U-A CC-GAU--UG AA-AGAUau- 5641 gau-gaau-- ugu-uugga- caag-aaaa- uaga-aau-- ---------- ---------- 5701 -------(uu u-----)--- ---------- ---------- ---------- --au-uuu-- 5761 uauuuu-uuu -ggaa-|gga -ccguaaauc cu-AUC-U-U UUAA-AGGAA GG-AGAA-G- 5821 UCGUAACAAG GU-------- -----U-U-C CGUAGG(UGA A)CCUGCGGA AGGAUCA--U 5881 UUUUA~~~~~ ~~~~~~~~|| ||| // LOCUS P.cyno.S 5903 bp RNA RNA 11-JAN-191 DEFINITION Plasmodium cynomolgi (sporozite stage). ACCESSION No information KEYWORDS No information. SOURCE Plasmodium cynomolgi (sporozite stage). ORGANISM Plasmodium cynomolgi (sporozite stage). REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: L08242 LOCUS PFARRNASSB 2537 bp ds-DNA INV 28-JAN-1993 DEFINITION Plasmodium cynomolgi small subunit rRNA, sexual (sporozoite) stage ACCESSION L08242 KEYWORDS ribosomal RNA small subunit; stage-specific transcript. SOURCE Plasmodium cynomolgi (strain Ceylon) (library: lambda gt11 library of Corredor & Enea) sexual stage (sporozoite) DNA. ORGANISM Plasmodium cynomolgi Eukaryota; Animalia; Protozoa; Apicomplexa; Sporozoa; Coccidia; Eucoccidiida; Haemosporina; Plasmodiidae. REFERENCE 1 (bases 1 to 2537) AUTHORS Corredor,V. and Enea,V. TITLE The small subunit ribosomal RNA genes in Plasmodium cynomolgi JOURNAL Unpublished (1993) STANDARD full automatic FEATURES Location/Qualifiers rRNA 219..2385 /product="ribosomal RNA small subunit" /note="putative" BASE COUNT 793 a 414 c 524 g 806 t ORIGIN BASE COUNT 668 a 369 c 454 g 676 t 3736 others ORIGIN 1 |~~~~~~~~~ ~~~~~AACCU GGU(UGA)UC UU|GCCAGU- A-GUCA-UAU --GCUUGUCU 61 CAAA|-GAUU AA-GCCAUGC A-AGUGA-AA GU|------- |--------- ----[----- 121 ---------- --------ac augcauauau ---------- ucaua-ugca gag]------ 181 -----|---A CU|G-CGAA- CGGCU-CAUU AAAA-cagu- uau-aauc-- ----uacuug 241 acau<----- ---------- ---------- ---------- ---------u uuuuuuuuuc 301 u>AUAAGG-A UAACUACGG( -A-AAAG)CU GUAGC-UAA- UACUUG---- ---------- 361 ---------- ---------- ---------- -- -guaucaauc -ga|guuucu ga|--CCU-A UCA--GCUUU U-GAUGUUA- 1141 GG(-GUAUUG G)CCU-AACA U-|GGCUA-U GAC|GGGU-A A-CGGG|GAA -U-(UAGA-) 1201 GUU-CGACU- CCG|GAGAGG G-AGCC(U-G AGAAAU)AGC UACC-ACAUC (UAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GU- AAAUU-ACCC -AAUUCU-A( ---aag--)A 1321 AGAG-A-GGU -|A|GUGACA AGAA-AU--- ---------- ---------- ---------- 1381 -----|---- ---------- ---------- ---------- ---------- ---------- 1441 --------AA CAAUACAAG- -ACCA(---- ---aaac)UG GU-UU-UGUA A-UUGGAAU- 1501 ------GAUG ----GGAAUU -UAAA--UUC U-----UC-C C-A-U-AAUA C---->AAUU 1561 GGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCCAA 1621 U-AGCGUA|U AUUAA--AAU UGUUG-CAG| UUA--AAACG CUCGUAGUUG |--------- 1681 ---------- ---------- ---------- ---------- ---------- -|-------< 1741 aauuucaaag a-a-ccgaua uuuuaa-uaa ugcuguu-ag cuagag-cca caaaaaguug 1801 ag-cc---a- uc-ucgg-uu ucggcuuua- --------ug ugcgcaucuc uaccuaucaa 1861 -guguuuuuu u-aauuaaag uguuucu-uu uua------- ----aaauc- uuc------- 1921 ---------u cuagcuaaaa cauauggaag guuu------ ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- --UGUUACUU UG-AGUA--A 2461 AUUAAAGUGU UC-AA-AG-C AAACagaua- ---------- ---------- ------uagc 2521 au---uucgC GUU--U--GA AUACUA-CAG CAUGGAA|UA -ACAAAA-UU -GAACaAGUC 2581 aa-------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- -----aa-cu a--u|guuuc 2821 -uu-uuuucu -ua-uuu--- --------uu GGC-UUaGUU A--CGAUUAA UA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGAG|UAGU U--------- 3001 --UGGGGGCG UU|--UGUAU UCAGAUG-UC -AGAG(GU-G AAA---)UUC U-UAGA-U-U 3061 UUCUG-GAG- A-CAAACA-A CUGC(-GAAA )--GA|G-ca UUUGUC-UA| AA-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUA ---CUUCCAU -UAA-U|CA- A-GAACGAAA 3301 GUUAAGGGA- GUGAAGACG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CGUAA|UCU UA--ACC-AU AAACUAUGCC GAC|UA|--- 3421 --GGUUU-UG GAU-G-A--- ----(----- ---------) aaguaaaaca aa---uaag- 3481 --gauagu-c uc---(uucg --)---ggga uag-uccuua --gauu-ucu ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------U C-CU-UCA-G -U-ACCcu-- ---------- ----auGA(- 3661 GAAA-)UCa- -AAGUC-uuu gGGU|-U|C- UGGGGCGAGU AU--UC-GC( --GCAA-)GC 3721 GAG-AAAGUU -AAAA--GAA -UUG|AC-GG -AA-GGGCA- -CCAC-CAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --C-GU|-GG 4021 AGCUUGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--AAA ACUCACUAGU UU[aag-aca 4081 agag-uagga uu-----gac aga(uuaaua g-c)------ ucuuu----- cuu-gauu-u 4141 cuugga---- -]-------- |--------- ---------- ---------- ---------- 4201 ---------- ---|UG-GU- GAU-G-CAUG |GCC|GU-UU UUA|GUUCG- U|GAA(UAUG 4261 A-)UUUGUC- -UGG(UU-AA UU)CCGAUA- AC-GAACGAG AUCUU-AA|- ---------- 4321 ---------- ---[CCU-GC UAAUUAGcgg uaaguacgac auauuuuuau aucg-aauug 4381 gauauguaug auuu--gcua aauugcgguc gca-aaua-a ugaagaucuu gauugcuuuu 4441 --cacgucag uguuuuccag aaucguu--g acgugacuag uauauacucg cu--ccuucu 4501 guucccug-- gacuucacuu cccug----- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- gc---uuauc auaccguuuc 4621 -cuuuuugug uagaaaugu- ----auuuau uuua-ug--- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- -----uaaag CU-------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------U CUUAGAGG]- --|------- ---------- AACG-AUG-U -G-U(----- 5041 --GUCUA-)A CACA-A-GGA AGUU-UAAGG CAACAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UG A|UGUC|CUU 5221 A-G-A-UGAA CUAG-GCUGC A-CGCGUGCU ACACU--G-A UAUGU----- ---------- 5281 ---------- -----[acaa cgaguua--- ---------- -----cuag- aaa---uaug 5341 c--auauguu auuugugcu( uauuc)agc- cuuuuaucau -uaucgcaua ---------c 5401 uuuuccu-cc acu(gaaa-) agugu----a gguaaucuuu cuuagu]--- ---------- 5461 -------ACA UAU-C-G--- UGAU-G-GGG AUAGAUUAU( UGCAAUUA)U UAAUCUUG-A 5521 ACGAGG-AAU G--CCUAGUA AG-CAC-GAU (-UCAUUAG- )AUUGU-G-C -UGACUACG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUCC-U-A CC-GAU--CG AG-AGACau- 5641 gau-gaau-- ugu-uugga- caag-aaaa- aaga-agau- ---------- ---------- 5701 -------(ua u-----)--- ---------- ---------- ---------- --au-cua-- 5761 cauuuu-ucu -ggaa-|aaa -ucguaaauc cu-GUC-U-U UUAA-AGGAA GG-AGAA-G- 5821 UCGUAACAAG GU-------- -----U-U-C CGUAGG(UGA A)CCUGCGGA AGGAUCA--- 5881 --UUA----- -------~|| ||| // LOCUS P.falc.S 5903 bp RNA RNA 11-JAN-191 DEFINITION Plasmodium falciparum (C gene). ACCESSION No information KEYWORDS No information. SOURCE Plasmodium falciparum (C gene). ORGANISM Plasmodium falciparum (C gene). REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: M19173 LOCUS PFARGEB 2126 bp ds-DNA INV 15-NOV-1992 DEFINITION P.falciparum 18S ribosomal RNA not in asexual parasites. ACCESSION M19173 KEYWORDS 18S ribosomal RNA; ribosomal RNA. SOURCE P.falciparum DNA, clone B. ORGANISM Plasmodium falciparum Eukaryota; Animalia; Protozoa; Apicomplexa; Sporozoasida; Coccidiasina; Eucoccidiida; Haemosporina; Plasmodiidae. REFERENCE 1 (bases 1 to 2126) AUTHORS McCutchan,T.F., De la Cruz,V.F., Lal,A.A., Gunderson,J.H., Elwood,H.J. and Sogin,M.L. TITLE Primary sequences of two small subunit ribosomal RNA genes from Plasmodium falciparum JOURNAL Mol. Biochem. Parasitol. 28, 63-68 (1988) STANDARD full automatic REFERENCE 2 (bases 1 to 2126) AUTHORS Sogin,M.L. JOURNAL Unpublished (1990) STANDARD full automatic COMMENT [2] revises [1]. Computer-readable copy of sequence for [2] kindly submitted by M.L.Sogin, 01-AUG-1990. SOGIN@EVOL1.MBL.EDU. NCBI gi: 160643 FEATURES Location/Qualifiers source 1..2126 /organism="Plasmodium falciparum" BASE COUNT 704 a 296 c 412 g 714 t ORIGIN BASE COUNT 676 a 272 c 393 g 687 t 3875 others ORIGIN 1 |~~~~~~~~~ ~~~~~AACCU GGU(UGA)UC UU|GCCAGU- A-GUCA-UAU --GCUUGUCU 61 CACA|-GAUU AA-GCCAUGC A-AGUGA-AA GU|------- |--------- ----[----- 121 ---------- --------ac auauguaagu ---------- -aaua-uauu gaa]------ 181 -----|---A CU|G-CGAA- CGGCU-CAUU AAAA-cagu- uau-aauc-- ----uacuug 241 augu<----- ---------- ---------- ---------- ---------- ----uuuuaa 301 u>AUAAGG-A UAACUACGG( -A-AAAU)CU GUAGC-UAA- UACUUG---- ---------- 361 ---------- ---------- ---------- -- -uuaucaauc -ga|guaucu ga|--CCU-A UCA--GCUUU U-GAUGUUA- 1141 GG(-GUAUUG A)CCU-AACA U-|GGCUA-U GAC|GGGU-A A-CGGG|GAA -U-(UAGA-) 1201 GUU-CGAUU- CCG|GAGAGG G-AGCC(U-G AGAAAU)AGC UACC-ACAUC (UAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GU- AAAUU-ACCC -AAUUCU-A( ---aaa--)A 1321 AGAG-A-GGU -|A|GUGACA AGAA-AU--- ---------- ---------- ---------- 1381 -----|---- ---------- ---------- ---------- ---------- ---------- 1441 --------AA CAAUACAAU- -AUCG(---- --aaaaa)UG AU-UU-UGUA A-UUGGAAU- 1501 ------GAUA ----GGAAUU -UACA--AGG U-----UC-C U-AGA-GAAA C---->AAUU 1561 GGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCCAA 1621 U-AGCAUA|U AUUAA--AAU UGUUG-CAG| UUA--AAACG UUCGUAGUUG |--------- 1681 ---------- ---------- ---------- ---------- ---------- -|-------< 1741 aauauuaaag a-auccgaug uuuca-uuua aacugguu-- ugggaa--aa ccaaauauau 1801 ua-ua---ua uu-uugc-uu uguucaaaau aa------gg uuuucua--a ua-aauuaug 1861 uuuuuaucag a-ua-ugaca gaaucuu-uu uua------- ----aaauc- ucu------- 1921 ---ucaauau gcuuuuauug cuuuugagag guuu------ ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- --UGUUACUU UG-AGUA--A 2461 AAUUAAGUGU UC-AU-AA-C AGACgggua- ---------- ---------- gucaugauug 2521 aguucauugU GUU--U--GA AUACUA-CAG CAUGGAA|UA -ACAAAU-AU -GAAUaAGCU 2581 aa-------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ------uuau uuuuuuuuuc auuauuuuuu 2821 -uu-gauauu -cu-ua---- --------uu AGC-UUaGUU A--CGAUUAA UA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGAG|UAGC U--------- 3001 -UUGGGGGCA UU|--CGUAU UCAGAUG-UC -AGAG(GU-G AAA---)UUC U-AAGA-U-U 3061 UUCUG-GAG- A-CGGACU-A CUGC(-GAAA )--GC|A--- UUUGCC-UA| AU-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------CUA ---UUUCCAU -UAA-U|CA- A-GAACGAAA 3301 GUUAAGGGA- GUGAAGACG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CGUAA|UCU UA--ACC-AU AAACUAUACC GAC|UA|--- 3421 --GGUGU-UG GAU-G-A--- ----(----- ---------) auauaaaaaa uauauaaaua 3481 uguagcau-u uc---(uuag --)---ggaa ugu-ugauuu uauauuagaa uugcu----- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------U C-CU-UCA-G -U-ACCuu-- ---------- ----auGA(- 3661 GAAA-)UCa- -AAGUC-uuu gGGU|-U|C- UGGGGCGAGU AU--UC-GC( --GCAA-)GC 3721 GAG-AAAGUU -AAAA--GAA -UUG|AC-GG -AA-GGGCA- -CCAC-CAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --C-GU|-GG 4021 AGCUUGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--AAA ACUCACUAGU UU[aag-aca 4081 agag-uagga uu-----gac aga(uuaaua g-c)------ ucuuu----- cuu-gauu-u 4141 cuugga---- -]-------- |--------- ---------- ---------- ---------- 4201 ---------- ---|UG-GU- GAU-G-CAUG |GCC|GU-UU UUA|GUUCG- U|GAA(UAUG 4261 A-)UUUGUC- -UGG(UU-AA UU)CCGAUA- AC-GAACGAG AUCUU-AA|- ---------- 4321 ---------- ---[CCU-GC UAAUUAGcgg uaaguacacu auauuuuuau uuga-aauug 4381 aauauaggua auuau-acau guuuauucag ugu-ucaaau uaggauauuu uuuuuauuaa 4441 --aauauucu uuucccuguu uuacuaauaa uuu------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- guuuuuuuuu acucuauuuc 4621 ucucuucuuu uaagaaugu- ----acuugc uugauuaa-- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ----auaaag CU-------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------U CUUAGAGG]- --|------- ---------- AACA-GUG-U -G-U(----- 5041 --AUCUA-)A CACA-A-GGA AGUU-UAAGG CAACAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UG A|UGUC|CUU 5221 A-G-A-UAAA CUAG-GCUGC A-CGCGUGCU ACAAU--G-A UAUAU----- ---------- 5281 ---------- -----[auaa caaguug--- ---------- -----uuaaa a-----augu 5341 a--------c uua------( -uaaa)---- --uaag---- -----ugugu acaa-----u 5401 uuuuccu-gu acu(gaaa-) aguau----a gguaaucuuu aucagu]--- ---------- 5461 -------AUA UAU-C-G--- UAAU-U-GGG AUAGAUUAU( UGCAAUUA)U UAAUCUUG-A 5521 ACGAGG-AA- ---------- ---------- ---------- ---------- ---------- 5581 ---------- --|------- ----GCCCGU CGCUCC-U-A CC-GAu--uG AA-AGAUau- 5641 gau-aaau-- ugu-uugga- uaug-aauu- aaaa-uaaua gaa------- ---------- 5701 ---------- ---------- ---------- ---------- ---------- ---------- 5761 ---------- ------|--- ---------- ---------- ---------- --------G- 5821 UCGUAACAAG GU-------- -----U-U-C CGUAGG(UGA A)CCUGCGGA AGGAUCA--- 5881 --UUA----- -------~|| ||| // LOCUS P.viva.S.1 5903 bp RNA RNA 11-JAN-191 DEFINITION Plasmodium vivax El Salvador sporozoite form. ACCESSION No information KEYWORDS No information. SOURCE Plasmodium vivax El Salvador sporozoite form. ORGANISM Plasmodium vivax El Salvador sporozoite form. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: U07368 Same as sequence sent by John Rogers on March 6th 1995. LOCUS PVU07368 2147 bp DNA INV 22-JUN-1994 DEFINITION Plasmodium vivax El Salvador sporozoite form small subunit rRNA gene. ACCESSION U07368 KEYWORDS . SOURCE Plasmodium vivax ORGANISM Plasmodium vivax Eucaryotae; Protozoa; Apicomplexa; Sporozoa; Coccidia; Eucoccidiida; Haemosporina; Plasmodium. REFERENCE 1 (bases 1 to 2147) AUTHORS Li,J., Wirtz,R., McConkey,G., Sattabongkot,J. and McCutchan,T.F. TITLE Transition of Plasmodium vivax ribosome types corresponds to sporozoite differentiation in the mosquito JOURNAL Mol. Biochem. Parasitol. (1994) In press BASE COUNT 646 a 361 c 464 g 676 t 3756 others ORIGIN 1 |~~~~~~~~~ ~~~~~AACCU GGU(UGA)UC UU|GCCAGU- A-GUCA-UAU --GCUUGUCU 61 CAAA|-GAUU AA-GCCAUGC A-AGUGA-AA GU|------- |--------- ----[----- 121 ---------- --------ac augcauauuu ---------- uuaua-ugcg gaa]------ 181 -----|---A CU|G-CGAA- CGGCU-CAUU AAAA-cagu- uau-aauc-- ----uacuug 241 acau<----- ---------- ---------- ---------- ---------- ---uuuuuuc 301 u>AUAAGG-A UAACUACGG( -A-AAAG)CU GUAGC-UAA- UACUUG---- ---------- 361 ---------- ---------- ---------- -- -guaucaauc -ga|guuucu ga|--CCU-A UCA--GCUUU U-GAUGUUA- 1141 GG(-GUAUUG G)CCU-AACA U-|UGCUA-U GAC|GGGU-A A-CGGG|GAA -U-(UAGA-) 1201 GUU-CGAUU- CCG|GAGAGG G-AGCC(U-G AGAAAU)AGC UACC-ACAUC (UAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GU- AAAUU-ACCC -AAUUCU-A( ---aag--)A 1321 AGAG-A-GGU -|A|GUGACA AGAA-AU--- ---------- ---------- ---------- 1381 -----|---- ---------- ---------- ---------- ---------- ---------- 1441 --------AA CAAUACAAG- -ACCA(---- ---aaac)UG GU-UU-UGUA A-UUGGAAU- 1501 ------GAUG ----GGAAUU -UAAA--UCC U-----UC-C C-A-U-AAUA C---->AAUU 1561 GGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCCAA 1621 U-AGCGUA|U AUUAA--AAU UGUUG-CAG| UUA--AAACG CUCGUAGUUG |--------- 1681 ---------- ---------- ---------- ---------- ---------- -|-------< 1741 aauuucaaag a-a-ccaaua uuuuaa-uaa cgccguu-ag cuagau-cca caagggguug 1801 ag-cc---aa uc-acgg-uu ucggcuuc-- --------ug ugcgcauc-c uaccuaucaa 1861 -gcguuuuuu u-aauuaaag uguuucu-uu uua------- ----aaauc- uuc------- 1921 ---------u uuaccuuaac cauauggaag auuu------ ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- --UGUUACUU UG-AGUA--A 2461 AUUAAAGUGU UC-AU-AG-C AAACagaua- ---------- ---------- ------cagc 2521 au---ugcgC GUU--U-uGA AUACUA-CAG CAUGGAA|UA -ACAAAA-UU -GAACaAGUC 2581 aa-------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- -----aa-cu a--u|guuuc 2821 -uu-uuuuuu -ua-uuu--- --------uu GGC-UUaGUU A--CGAUUAA UA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGAG|UAGU U--------- 3001 --UGGGGACA UU|--UGUAU UCAGAUG-UC -AGAG(GU-G AAA---)UUC U-AAGA-U-U 3061 UUCUG-GAG- A-CAAACA-A CUGC(-GAAG )--GC|A--- UUUGUC-UA| AA-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUA ---CUUCCAU -UAA-U|CA- A-GAACGAAA 3301 GUUAAGGGA- GUGAAGACG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CGUAA|UCU UA--ACC-AU AAACUAUACC GAC|UA|--- 3421 --GGUUU-UG GAU-G-A--- ----(----- ---------) aaguuaaaca aa---uaag- 3481 --gauagu-c uc---(uucg --)---ggga uag-uccuua --gauu-ucu ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------U C-CU-UCA-G -U-ACCcu-- ---------- ----auGA(- 3661 GAAA-)UCa- -AAGUC-uuu gGGU|-U|C- UGGGGCGAGU AU--UC-GC( --GCAA-)GC 3721 GAG-AAAGUU -AAAA--GAA -UUG|AC-GG -AA-GGGCA- -CCAC-CAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --C-GU|-GG 4021 AGCUUGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--AAA ACUCACUAGU UU[aag-aca 4081 agag-uagga uu-----gac aga(uugaga g-c)------ ucuuu----- cuc-gauu-u 4141 cuugga---- -]-------- |--------- ---------- ---------- ---------- 4201 ---------- ---|UG-GU- GAU-G-CAUG |GCC|GU-UU UUA|GUUCG- U|GAA(UAUG 4261 A-)UUUGUC- -UGG(UU-AA UU)CCGAUA- AC-GAACGAG AUCUU-AA|- ---------- 4321 ---------- ---[CCU-GC UAAUUAGcgg uaaguacgac auauuuuuau gucg-gauug 4381 gaucuggaug auuu--gcuu auauugaggu gca-aucuaa auaggggauu gcaauuauac 4441 --uucguguc gguguuucuu aaucgaauag cugaugcguu ugguauauug cuuuccuu-u 4501 uuuuuauuuc ugcgcuucuu uacuug---- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- gc---uuauc guaccguuuc 4621 -cuuuuugug uagaaaugu- ----auuugc auuauau--- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- -----uaaag CU-------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------U CUUAGAGG]- --|------- ---------- AACG-AUG-U -G-U(----- 5041 --GUCUA-)A CACA-A-GGA AGUU-UAAGG CAACAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UG A|UGUC|CUU 5221 A-G-A-UGAA CUAG-GCUGC A-CGCGUGCU ACACU--G-A UAUGU----- ---------- 5281 ---------- -----[acaa cgaguua--- ---------- -----uuaa- aau---uacg 5341 auu------c ag-------( -cuug)---- ---cug---- ---uuacgua ---------u 5401 uuuuccu-cc acu(gaaa-) agugu----a gguaaucuuu aucagu]--- ---------- 5461 -------ACA UAU-C-G--- UGAU-G-GGG AUAGAUUAU( UGCAAUUA)U UAAUCUUG-A 5521 ACGAGG-AAU G--CCUAGUA AG-CAC-GAU (-UCAUUAG- )AUUGU-G-C -UGACUACG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUCC-U-A CC-GAU--CG AA-AGAUau- 5641 gau-gaau-- ugu-uugga- caag-aaga- aagg-ggau- ---------- ---------- 5701 -------(ua u-----)--- ---------- ---------- ---------- --au-cuu-- 5761 cuuuuu-ucu -ggaa-|aaa -ccguaaauc cu-GUC-U-U UUAA-AGGAA GG-AGAA-G- 5821 UCGUAACAAG GU-------- -----U-U-C CGUAGG(UGA A)CCUGCGGA AGGAUCA--- 5881 --UUA~~~~~ ~~~~~~~~|| ||| // LOCUS P.viva.S.2 5903 bp RNA RNA 11-JAN-191 DEFINITION Plasmodium vivax SAL 1 sporozoite. ACCESSION No information KEYWORDS No information. SOURCE Plasmodium vivax SAL 1 sporozoite. ORGANISM Plasmodium vivax SAL 1 sporozoite. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: U03080 LOCUS PVU03080 2146 bp DNA INV 23-NOV-1993 DEFINITION Plasmodium vivax SAL 1 sporozoite small subunit rRNA gene. ACCESSION U03080 KEYWORDS . SOURCE Plasmodium vivax ORGANISM Plasmodium vivax Eucaryotae; Protozoa; Apicomplexa; Sporozoa; Coccidia; Eucoccidiida; Haemosporina; Plasmodium. REFERENCE 1 (bases 1 to 2146) AUTHORS Qari,S.H., Goldman,I.F., Collins,W.E. and Lal,A.A. TITLE Asexual and sporozoite stage specific small subunit ribosomal RNA genes of Plasmodium vivax JOURNAL Unpublished STANDARD full automatic REFERENCE 2 (bases 1 to 2146) AUTHORS Goldman,I.,F. TITLE Direct Submission JOURNAL Submitted (02-NOV-1993) Goldman I. F., Centers for Disease Control and Prevention, Malaria Branch, 4770 Buford Hwy, Chamblee, GA 30431 USA STANDARD full automatic FEATURES Location/Qualifiers source 1..2146 /strain="SAL 1" /organism="Plasmodium vivax" /specific_host="Homo sapiens" /germline /macronuclear /dev_stage="sporozoite" BASE COUNT 647 a 360 c 463 g 676 t ORIGIN BASE COUNT 647 a 360 c 463 g 676 t 3757 others ORIGIN 1 |~~~~~~~~~ ~~~~~AACCU GGU(UGA)UC UU|GCCAGU- A-GUCA-UAU --GCUUGUCU 61 CAAA|-GAUU AA-GCCAUGC A-AGUGA-AA GU|------- |--------- ----[----- 121 ---------- --------ac augcauauuu ---------- uuaua-ugcg gaa]------ 181 -----|---A CU|G-CGAA- CGGCU-CAUU AAAA-cagu- uau-aauc-- ----uacuug 241 acau<----- ---------- ---------- ---------- ---------- ---uuuuuuc 301 u>AUAAGG-A UAACUACGG( -A-AAAG)CU GUAGC-UAA- UACUUG---- ---------- 361 ---------- ---------- ---------- -- -guaucaauc -ga|guuucu ga|--CCU-A UCA--GCUUU U-GAUGUUA- 1141 GG(-GUAUUG G)CCU-AACA U-|UGCUA-U GAC|GGGU-A A-CGGG|GAA -U-(UAGA-) 1201 GUU-CGAUU- CCG|GAGAGG G-AGCC(U-G AGAAAU)AGC UACC-ACAUC (UAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GU- AAAUU-ACCC -AAUUCU-A( ---aag--)A 1321 AGAG-A-GGU -|A|GUGACA AGAA-AU--- ---------- ---------- ---------- 1381 -----|---- ---------- ---------- ---------- ---------- ---------- 1441 --------AA CAAUACAAG- -ACCA(---- ---aaac)UG GU-UU-UGUA A-UUGGAAU- 1501 ------GAUG ----GGAAUU -UAAA--UCC U-----UC-C C-A-U-AAUA C---->AAUU 1561 GGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCCAA 1621 U-AGCGUA|U AUUAA--AAU UGUUG-CAG| UUA--AAACG CUCGUAGUUG |--------- 1681 ---------- ---------- ---------- ---------- ---------- -|-------< 1741 aauuucaaag a-a-ccaaua uuuuaa-uaa cgccguu-ag cuagau-cca caagggguug 1801 ag-cc---aa uc-acgg-uu ucggcuuc-- --------ug ugcgcauc-c uaccuaucaa 1861 -gcguuuuuu u-aauuaaag uguuucu-uu uua------- ----aaauc- uuc------- 1921 ---------u uuaccuuaac cauauggaag auuu------ ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- --UGUUACUU UG-AGUA--A 2461 AUUAAAGUGU UC-AU-AG-C AAACagaua- ---------- ---------- ------cagc 2521 au---ugcgC GUU--U-uGA AUACUA-CAG CAUGGAA|UA -ACAAAA-UU -GAACaAGUC 2581 aa-------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- -----aa-cu a--u|guuuc 2821 -uu-uuuuuu -au-uu---- --------uu GGC-UUaGUU A--CGAUUAA UA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGAG|UAGU U--------- 3001 --UGGGGACA UU|--UGUAU UCAGAUG-UC -AGAG(GU-G AAA---)UUC U-AAGA-U-U 3061 UUCUG-GAG- A-CAAACA-A CUGC(-GAAG )--GC|A--- UUUGUC-UA| AA-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUA ---CUUCCAU -UAA-U|CA- A-GAACGAAA 3301 GUUAAGGGA- GUGAAAACG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CGUAA|UCU UA--ACC-AU AAACUAUACC GAC|UA|--- 3421 --GGUUU-UG GAU-G-A--- ----(----- ---------) aaguuaaaca aa---uaag- 3481 --gauagu-c uc---(uucg --)---ggga uag-uccuua --gauu-ucu ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------U C-CU-UCA-G -U-ACCcu-- ---------- ----auGA(- 3661 GAAA-)UCa- -AAGUC-uuu gGGU|-U|C- UGGGGCGAGU AU--UC-GC( --GCAA-)GC 3721 GAG-AAAGUU -AAAA--GAA -UUG|AC-GG -AA-GGGCA- -CCAC-CAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --C-GU|-GG 4021 AGCUUGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--AAA ACUCACUAGU UU[aag-aca 4081 agag-uagga uu-----gac aga(uugaga g-c)------ ucuuu----- cuu-gauu-u 4141 cuugga---- -]-------- |--------- ---------- ---------- ---------- 4201 ---------- ---|UG-GU- GAU-G-CAUG |GCC|GU-UU UUA|GUUCG- U|GAA(UAUG 4261 A-)UUUGUC- -UGG(UU-AA UU)CCGAUA- AC-GAACGAG AUCUU-AA|- ---------- 4321 ---------- ---[CCU-GC UAAUUAGcgg uaaguacgac auauuuuuau gucg-gauug 4381 gaucuggaug auuu--gcuu auauugaggu gca-aucuaa auaggggauu gcaauuauac 4441 --uucguguc gguguuucuu aaucgaauag cugaugcguu ugguauauug cuuuccuu-u 4501 uuuuuauuuc ugcgcuucuu uacuug---- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- gc---uuauc guaccguuuc 4621 -cuuuuugug uagaaaugu- ----auuugc auuauau--- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- -----uaaag CU-------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------U CUUAGAGG]- --|------- ---------- AACG-AUG-U -G-U(----- 5041 --GUCUA-)A CACA-A-GGA AGUU-UAAGG CAACAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UG A|UGUC|CUU 5221 A-G-A-UGAA CUAG-GCUGC A-CGCGUGCU ACACU--G-A UAUGU----- ---------- 5281 ---------- -----[acaa cgaguua--- ---------- -----uuaa- aau---uacg 5341 auu------c ag-------( -cuug)---- ---cug---- ---uuacgua ---------u 5401 uuuuccu-cc acu(gaaa-) agugu----a gguaaucuuu aucagu]--- ---------- 5461 -------ACA UAU-C-G--- UGAU-G-GGG AUAGAUUAU( UGCAAUUA)U UAAUCUUG-A 5521 ACGAGG-AAU G--CCUAGUA AG-CAC-GAU (-UCAUUAG- )AUUGU-G-C -UGACUACG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUCC-U-A CC-GAU--CG AA-AGAUau- 5641 gau-gaau-- ugu-uugga- caag-aaga- aagg-ggau- ---------- ---------- 5701 -------(ua u-----)--- ---------- ---------- ---------- --au-cuu-- 5761 cuuuuu-ucu -ggaa-|aaa -ccguaaauc cu-GUC-U-U UUAA-AGGAA GG-AGAA-G- 5821 UCGUAACAAG GU-------- -----U-U-C CGUAGG(UGA A)CCUGCGGA AGGAUCA--- 5881 --UUA~~~~~ ~~~~~~~~|| ||| // LOCUS P.viva.S.3 5903 bp RNA RNA 11-JAN-191 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: U93234 K1294 (THAI) P. vivax S gene 1.993 kb BASE COUNT 591 a 337 c 433 g 632 t 3910 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~(~~~)~~ ~~|~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~|~~~~~~~ |~~~~~~~~~ ~~~~[~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~]~~~~~~ 181 ~~~~~|~~~~ ~~|~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~<~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 ~>~~~~GG-A UAACUACGG( -A-AAAG)CU GUAGC-UAA- UACUUG---- ---------- 361 ---------- ---------- ---------- -- -guaucaauc -ga|guuucu ga|--CCU-A UCA--GCUUU U-GAUGUUA- 1141 GG(-GUAUUG G)CCU-AACA U-|UGCUA-U GAC|GGGU-A A-CGGG|GAA -U-(UAGA-) 1201 GUU-CGAUU- CCG|GAGAGG G-AGCC(U-G AGAAAU)AGC UACC-ACAUC (UAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GU- AAAUU-ACCC -AAUUCU-A( ---aag--)A 1321 AGAG-A-GGU -|A|GUGACA AGAA-AU--- ---------- ---------- ---------- 1381 -----|---- ---------- ---------- ---------- ---------- ---------- 1441 --------AA CAAUACAAG- -GCCA(---- ---auc-)UG GC-UU-UGUA A-UUGGAAU- 1501 ------GAUG ----GGAAUU -UAAA--UCC U-----UC-C C-A-U-AAUA C---->AAUU 1561 GGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCCAA 1621 U-AGCGUA|U AUUAA--AAU UGUUG-CAG| UUA--AAACG CUCGUAGUUG |--------- 1681 ---------- ---------- ---------- ---------- ---------- -|-------< 1741 aauuucaaag a-a-ccaaua uuuuaa-uaa cgccguu-ag cuagau-cca caagggguug 1801 ag-cc---aa uc-acgg-uu ucggcuuc-- --------ug ugcgcauc-c uaccuaucaa 1861 -guguuuuuu u-aauuaaag uguuucu-uu uua------- ----aaauc- uuc------- 1921 ---------u uuaccuuaac cauauggaag auuu------ ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- --UGUUACUU UG-AGUA--A 2461 AUUAAAGUGU UC-AU-AG-C AAACagaua- ---------- ---------- ------cagc 2521 au---ugcgC GUU--U-uGA AUACUA-CAG CAUGGAA|UA -ACAAAA-UU -GAACaAGUC 2581 aa-------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- -----aa-cu a--u|guuuc 2821 -uu-uuuuuu -ua-uuu--- --------uu GGC-UUaGUU A--CGAUUAA UA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGAG|UAGU U--------- 3001 --UGGGGACA UU|--UGUAU UCAGAUG-UC -AGAG(GU-G AAA---)UUC C-AAGA-U-U 3061 UUCUG-GAG- A-CAAACA-A CUGC(-GAAG )--GC|A--- UUUGUC-UA| AA-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUA ---CUUCCAU -UAA-U|CA- A-GAACGAAA 3301 GUUAAGGGA- GUGAAGACG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CGUAA|UCU UA--ACC-AU AAACUAUACC GAC|UA|--- 3421 --GGUUU-UG GAU-G-A--- ----(----- ---------) aaguuaaaca aa---uaag- 3481 --gauagu-c uc---(uucg --)---ggga uag-uccuua --gauu-ucu ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------U C-CU-UCA-G -U-ACCcu-- ---------- ----auGA(- 3661 GAAA-)UCa- -AAGUC-uuu gGGU|-U|C- UGGGGCGAGU AU--UC-GC( --GCAA-)GC 3721 GAG-AAAGUU -AAAA--GAA -UUG|AC-GG -AA-GGGCA- -CCAC-CAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --C-GU|-GG 4021 AGCUUGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--AAA ACUCACUAGU UU[aag-aca 4081 agag-uagga uu-----gac aga(uugaga g-c)------ ucuuu----- cuu-gauu-u 4141 cuugga---- -]-------- |--------- ---------- ---------- ---------- 4201 ---------- ---|UG-GU- GAUuG-CAUG |GCC|GU-UU UUA|GUUCG- U|GAA(UAUG 4261 A-)UUUGUC- -UGG(UU-AA UU)CCGAUA- AC-GAACGAG AUCUU-AA|- ---------- 4321 ---------- ---[CCU-GC UAAUUAGcgg uaaguacgac auauuuuuau gucg-gauug 4381 gaucuggaug auuu--gcuu auauugaggu gca-aucuaa auaggggauu gcaauuauac 4441 --uucguguc gguguuucuu aaucgaauag cugaugcguu ugguauauug cuuuccuuuu 4501 uuuuuauuuc ugcgcuucuu uacuug---- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- gc---uuauc guaccguuuc 4621 -cuuuuugug uagaaaugu- ----auuugc auuauau--- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- -----uaaag CU-------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------U CUUAGAGG]- --|------- ---------- AACG-AUG-U -G-U(----- 5041 --GUCUA-)A CACA-A-GGA AGUU-UAAGG CAACAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UG A|UGUC|CUU 5221 A-G-A-UGAA CUAG-GCUGC A-CGCGUGCU ACACU--G-A UAUGU----- ---------- 5281 ---------- -----[acaa cgaguua--- ---------- -----cuaga aa----uaug 5341 cauuuc---g cuauuuugug cuuauccagc cuuuuuagca uuauggcaua ---------c 5401 uuuuccu-cc acu(gaaa-) agugu----a gguaaucuuu aucagu]--- ---------- 5461 -------ACA UAU-C-G--- UGAU-G-GGG AUAGAUUAU( UGCAAUUA)U UAAUCUUG-A 5521 ACGAGG-AAU G--CCUAGUA AG-CAC-GAU (-UCACUAG- )AUUGU-G-C -UGACUACG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUCC-U-A CC-GAU--CG AA-AGAUau- 5641 gau-gaau-- ugu-uugga- caag-aaga- aagg-ggau- ---------- ---------- 5701 -------(ua u-----)--- ---------- ---------- ---------- --au-cuu-- 5761 cuuuuu-ucu -ggaa-|aaa -ccguaaauc cu-AUC-U-U UUAA-AGGAA GG-AGAA-G- 5821 UCG~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~)~~~~~~~~ ~~~~~~~~~~ 5881 ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS +++O 5903 bp RNA RNA 13-JAN-1995 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: DIVIDER BASE COUNT 0 a 0 c 0 g 0 t 5903 others ORIGIN 1 |......... .......... .......... .......... .-........ .......... 61 .......... .......... .-........ ..|....... |......... .......... 121 .......... .......... .......... .......... .....-.... .......... 181 .......... ..|....... .......... .......... .......... .......... 241 .......... .......... .......... .......... .......... .......... 301 .......... .......... .......... .......... .......... .......... 361 .......... .......... .......... .......... .......... .......... 421 .......... .......... .......... .......... .......... .......... 481 .......... .......... .......... .......... .......... .......... 541 .......... .......... .......... .......... .......... .......... 601 .......... .......... .......... .......... .......... .......... 661 .......... .......... .......... .......... .......... .......... 721 .......... .......... .......... .......... .......... .......... 781 .......... .......... .......... .......... .......... .......... 841 .......... .......... .......... .......... .......... .......... 901 .......... .......... .......... .......... .......... .......... 961 .......... .......... .......... .......... .......... .......... 1021 .......... .......... .......... .......... .......... .......... 1081 .......... .......... ...|...... .......... .......... .-........ 1141 .......... .......... .......... ...|...... .......... .......... 1201 .......... .......... .......... .......... ....-..... .....-.... 1261 .......... .........| .......... .......... .......... .......... 1321 .......... .|........ ....-..... .......... .......... .......... 1381 .....|.... .......... .......... .......... .......... .......... 1441 .......... .......... .......... .......... .......... .......... 1501 .......... .......... .......... .-----.... .......... .....>.... 1561 .......... .......... .......... .......... .......... ..-|...... 1621 ........|. .......... .........| .......... .......... .......... 1681 .......... .......... .......... .......... .......... .|........ 1741 .......... .-........ .......... .......... ......-... .......... 1801 ..-....... ..-....-.. .......... .......... .......... .......... 1861 .......... .-........ .......... .......... .......... .......... 1921 .......... .......... .......... .......... .......... .......... 1981 .......... .......... .......... .......... .......... .......... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... .......... .......... .......... .......... .......... 2161 .......... .......... .......... .......... .......... .......... 2221 .......... .......... .......... .......... .......... .......... 2281 .......... .......... .......... .......... .......... .......... 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... ....-..... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... .......... 2701 .......... .......... .......... .......... .......... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ..---..... 2881 .......... .......... .......... .......... .......... .......... 2941 .......... .......... .......... .......... .....|.... .......... 3001 .......... ...--..... .......... .......... .......... .......... 3061 .......... .......... .......... .....|.... .........| ..-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------... .......... ....-.|... .......... 3301 .......... .......... ....------ ---------- ---------- ---------- 3361 ---------. .......... .......... .......... .......... ...|...... 3421 .......... .......... .......... .......... .......... .......... 3481 .......... .......... .......... .......... .......... .......... 3541 .......... .......... .......... .......... .......... .......... 3601 .......... .......... .......... .......... .......... .......... 3661 .......... .......... .......|.. .......... .......... .......... 3721 .......... -......... ....|..... .......... .......... ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --....|... 4021 ........|. .......... .......-.. .......... .......... .......... 4081 .......... ..-----... .......... .-..--.... .....----- ...-...... 4141 .......... .]........ |......... .......... .......... .......... 4201 .......... ...|...... .......... ....|..... .........- .......... 4261 .-........ .......... .......... ..-....... .......... .......... 4321 .......... .......... .......... .......... .......... .......... 4381 .......... .......... .......... ...-...... .......... .......... 4441 --........ .......... .......... .......... .......... .......... 4501 .......... .......... .......... .......... .......... .......... 4561 .......... .......... .......... .......... .......... .......... 4621 .......... .......... .......... .......... .......... .......... 4681 .......... .......... .......... .......... .......... .......... 4741 .......... .......... .......... .......... .......... .......... 4801 .......... .......... .......... .......... .......... .......... 4861 .......... .......... .......... .......... .......... .......... 4921 .......... .......... .......... .......... .......... .......... 4981 .......... .......... .......... .......... .......... .......... 5041 .......... .......... .......... .......... ...------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ---....... .|....|... 5221 .......... .......... .......... .......... .......... .......... 5281 ....-..... .......... .......... .......... .......... .......... 5341 .......... .......... .......... .......... .......... .......... 5401 .......... .......... .......... .......... .......... .......... 5461 .......... .....-..-- ....-.-... .......... .......... .......... 5521 .......... .-........ .......... .-........ .......... .......... 5581 .......... ..|....... .......... .......... .......... .......... 5641 ...-.....- .......... .......... .......... .......... .......... 5701 ......-... .......... .......... .......... .......... ........-. 5761 .......... ......|... .......... .......... .......... .......... 5821 .......... .......... .......... .......... .......... .......... 5881 .......... ........|| ||| // LOCUS P.viva.O.1 5903 bp RNA RNA 11-JAN-191 DEFINITION Plasmodium vivax. ACCESSION No information KEYWORDS No information. SOURCE Plasmodium vivax. ORGANISM Plasmodium vivax. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: U93095 Plasmodium vivax S gene BASE COUNT 656 a 393 c 504 g 676 t 3674 others ORIGIN 1 |~~~~~~~~~ ~~~~~AACCU GGU(UGA)UC UU|GCCAGU- A-GUCA-UAU acGCUUGUCU 61 CAAA|-GAUU AA-GUCAUGC U-AGUGA-AA GG|------- |--------- ----[----- 121 ------a--- -------uau acgcauauau ------u--u gcaua-ugca gaa]------ 181 -----|---A CU|G-CGAA- CGGCU-CAUU AAAA-cagu- uau-aaua-- ----uacugg 241 acau<----- ---------- ---------- ---------- ---------- ---uuuuucc 301 c>AUAAGG-A UGAUUACGG( -A-AAAG)CU GUAGC-CAA- UAUUUG---- ---------- 361 ---------- ---------- ---------- -- -guguccauc -ga|guuucu ga|--CCU-A UCA--GCUUU U-GAUGUUA- 1141 GG(-GUAUUG G)CCU-AACA U-|GGCUA-U GAC|GGGC-A A-CGGG|GAA -U-(UAUA-) 1201 GUU-CGAUU- CCC|GAGAGG G-AGCU(U-G AGAAAU)AGC UACC-ACAUC (UAAG-)GAA 1261 -GGCAGC-Au auagcagca| ugg-ga-GU- AAAUU-ACCC -AACUCU-A( ---aag--)A 1321 AGAG-A-GGU -|A|GUGACA AGAA-GUu-- ---------- ---------- ---------- 1381 -----|---- ---------- ---------- ---------- ---------- ---------- 1441 --------AA CAAUACAAG- -GCCA(---- ---aua-)UG GC-UU-UAUA A-UUGGAAU- 1501 ------GGUG ugcggggggg gugguuuuau c-----cuuc ucccaaAACA C---->AAUU 1561 GGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCCAA 1621 U-AGCGUA|U AUUAA--AAU CGUUG-CAG| UUA--UAAUG UUCGUAGUUA |--------- 1681 ---------- ---------- ---------- ---------- ---------- -|-------< 1741 aauuugaaag a-a-ucaaca uuuuaagcaa cgc-guuuag cuuaau-cca cacgacuggu 1801 gc-uu---cg ua-ucgg-uu gguacuuagc aucgacauug ugcgcauuuu gcuacuacgu 1861 guucuucuaa u-uaaaauga uucuuuuu-- ---------- ----aggggu uuccuu---- 1921 ----uguuuc g--gca---- ----uugaau cccu------ ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- --UGUUACCU UG-CGAA--A 2461 AAUAAACUGU UC-AA-AG-G AAACaguua- ---------- ---------- -uauuauagc 2521 au---ugcgC GUU--U-cGA AUACUA-CAG CAGGGAA|UA -ACAAAA-UU -GAACgAGUa 2581 aa-------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- -----aa-cu u--g|guu-c 2821 -au-uuuucu -ua-uu---- --------uu GGC-UUaGUU A--CGAUUAA UU--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGAG|UAGC A--------- 3001 --UGGGGGCA UU|--UGUAU UCAGAUG-UC -AGAG(GU-G AAA---)UUC U-UAGA-U-U 3061 UUCUG-GAG- A-CAAACA-A CUGC(-GAAA )--GC|A--- UUUGCC-UA| AA-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUA ---CUUCCAU -UAA-U|CA- A-GAACGAAA 3301 GUUAAGGGA- GUGAAGACG( AUUA------ ---------- ---------- ---------- 3361 ---------- GAUGC)CG-U -CGUAA|UCU UA--ACC-AU AAACAAUGCC GAC|UA|gac 3421 uaGGCUU-UA GAU-G-A--- ----(----- ---------) aaaguuuuaa aa---uaag- 3481 --aguuuu-c uc---(uucg --)---gagu uaaccucuua --gauuugcu ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------U C-CU-UCA-G -U-GCCuu-- ---------- ----agGG(- 3661 GAAA-)UCa- -AAacC-uuu gGGU|-U|C- UGGGGAAAGU AU--UC-GC( --GCAA-)GC 3721 GAG-AAAGUU AAAAA--GAA -UUG|AC-GG -AA-GGGCA- -CCAC-CAGA ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --C-GU|-GG 4021 AGCUUGCG|G CU-UAAUUUG (ACUCAG-CA )CGGG--AAA GCUCACUAGU UU[aag-aca 4081 agag-uagga uu-----gaa aga(uugaga g-a)--gagc ucuuu----- cuu-gauu-u 4141 cuugga---- -]-------- |--------- ---------- ---------- ---------- 4201 ---------- ---|UG-GU- GAC-G-CAUG |GCC|GU-UU UCA|GUUCG- U|GAa(uau- 4261 --)-UUGUC- -GGG(UU-AA UC)CCGAUG- AU-GAACGGG ACCUU-AA|- ---------- 4321 ---------- ---[CCU-GC UAAGUAGcgg caaauacgau acauucuuag guaa-gauug 4381 aaccugguug auu--ugcuc ----auuucg aag-ug-cac gcauga-gga ucgggauuau 4441 gug-acgcgu cagu(uuuuu ucugccgauu u)acugaugc agcacauauu ucucguucuu 4501 ucauucgugc acuucga-aa uaa------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- gca---aauc aaccagguuc 4621 -aauuuuacc uaagaaugug uuucauuugc uugauug--- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- -----uaaag CU-------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------U CUUAGAGG]- --|------- ---------- AACA-GUG-U -G-U(----- 5041 --GUGUA-)A CACA-A-GGA AGAU-UAAGG CAACAAaaCA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ---cCUG-CG A|UGUC|CUU 5221 A-G-A-UGAA CUAG-GAAGC --CCCGUGCU ACACG--G-A UAUGU----- ---------- 5281 ---------- -----[gcaa cgaguug--- ---------- -----uuaga agugugcaug 5341 ug-uuauuug ugcu-uaug( -gagc)cguu uagcau-ca- ---ucgcaug ---------c 5401 uuuuccu-cc acu(gaaa-) agugu----a gguaauauuu aucagu]--- ---------- 5461 -------ACG UAU-C-G--- UGAU-G-AGG AUAuau---( UGCAAUUA)u caaucUCG-A 5521 CCGAGG-AAC G--UCUAGUA AG-CGG-GAU (-UCACCAG- )AUUGC-G-C -UGACUACG- 5581 U-CCCUGCGC UU|UGUA-CA CACCGCCCGU CGCUCC-U-A CC-GAU--UG GA-AGAUac- 5641 gau-gaau-- cgu-uugaa- uaag-agaa- aagg-ggau- ---------- ---------- 5701 -------(ua uauauc)--- ---------- ---------- ---------- ---u-uuu-- 5761 uuuuuc-ucu -gaaa-|gaa -ucgaaaauc uu-AUC-U-U UUAA-AGGAA GG-AGAA--- 5821 ucgacacguu caaguucacu acgagU-U-C CaUAGG(uuc a)UCUACGGA AGG-UCU--- 5881 --UU~~~~~~ ~~~~~~~~|| ||| // LOCUS P.viva.O.2 5903 bp RNA RNA 11-JAN-191 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: U93235 BASE COUNT 595 a 358 c 467 g 611 t 3872 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~(~~~)~~ ~~|~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~|~~~~~~~ |~~~~~~~~~ ~~~~[~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~]~~~~~~ 181 ~~~~~|~~~~ ~~|~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~<~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 ~>~~~~GG-A UAACUACGG( -A-AAAG)CU GUAGC-CAA- UAUUUG---- ---------- 361 ---------- ---------- ---------- -- -guguccauc -ga|guuucu ga|--CCU-A UCA--GCUUU U-GAUGUUA- 1141 GG(-GUAUUG G)CCU-AACA U-|GGCUA-U GAC|GGGC-g A-CGGG|GAA -U-(UAUA-) 1201 GUU-CGAUU- CCC|GAGAGG G-AGCU(U-G AGAAAU)AGC UACC-ACAUC (UAAG-)GAA 1261 -GGCAGC-Au auagcagca| ugg-ga-GU- AAAUU-ACCC -AACUCU-A( ---aag--)A 1321 AGAG-A-GGU -|A|GUGACA AGAA-GUu-- ---------- ---------- ---------- 1381 -----|---- ---------- ---------- ---------- ---------- ---------- 1441 --------AA CAAUACAAG- -GCCA(---- ---aua-)UG GC-UU-UAUA A-UUGGAAU- 1501 ------GGug ugcggggggg gugguuuuau c-----cucc ucccaaAACA C---->AAUU 1561 GGAG|GG-CA A-GU-C-UGG U-G(CCA-aC -AGCC|GC-G GU-AA)UUCC AG-|CUCCAA 1621 U-AGCGUA|U AUUAA--AAU CGUUG-CAG| UUA--UAAUG UUCGUAGUUA |--------- 1681 ---------- ---------- ---------- ---------- ---------- -|-------< 1741 aauuugaaag a-a-ucaaca uuuuaagcaa cgc-guucag cuuaau-cca cacgacuggu 1801 gc-uu---cg ua-ucgg-uu gguacuuagc aucgacauug ugcgcauuuu gcuacuacgu 1861 guucuucuaa u-uaaaauga uucuuuuu-- ---------- ----aggggu uuccuu---- 1921 ----uguuuc g--gca---- ----uugaau cccu------ ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- --UGUUACCU UG-CGAA--A 2461 AAUAAACUGU UC-AA-AG-G AAACaguua- ---------- ---------- -uauuauagc 2521 au---ugcgC GUU--U-cGA AUACUA-CAG CAGGGAA|UA -ACAAAA-UU -GAACgAGUa 2581 aa-------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- -----aa-cu u--g|guu-c 2821 -au-uuuucu -ua-uu---- --------uu GGC-UUaGUU A--CGAUUAA UU--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGAG|UAGC A--------- 3001 --UGGGGGCA UU|--UGUAU UCAGAUG-UC -AGAG(GU-G AAA---)UUC U-UAGA-U-U 3061 UUCUG-GAG- A-CAAACA-A CUGC(-GAAA )--GC|A--- UUUGCC-UA| AA-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUA ---CUUCCAU -UAA-U|CA- A-GAACGAAA 3301 GUUAAGGGA- GUGAAGACG( AUUA------ ---------- ---------- ---------- 3361 ---------- GAUGC)CG-U -CGUAA|UCU UA--ACC-AU AAACAAUGCC GAC|UA|gac 3421 uaGGCUU-UA GAU-G-A--- ----(----- ---------) aaaguuuuaa aa---uaag- 3481 --aguuuu-c uc---(uucg --)---gagu uaaccucuua --gauuugcu ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------U C-CU-UCA-G -U-GCCuu-- ---------- ----agGG(- 3661 GAAA-)UCa- -AAacC-uuu gGGU|-U|C- UGGGGAAAGU AU--UC-GC( --GCAA-)GC 3721 GAG-AAAGUU AAAAA--GAA -UUG|AC-GG -AA-GGGCA- -CCAC-CAGA ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --C-GU|-GG 4021 AGCUUGCG|G CU-UAAUUUG (ACUCAG-CA )CGGG--AAA GCUCACUAGU UU[aag-aca 4081 agag-uagga uu-----gaa aga(uugaga g-a)--gagc ucuuu----- cuu-gauu-u 4141 cuugga---- -]-------- |--------- ---------- ---------- ---------- 4201 ---------- ---|UG-GU- GAC-G-CAUG |GCC|GU-UU UCA|GUUCG- U|GAa(uau- 4261 --)-UUGUC- -GGG(UU-AA UC)CCGAUG- AU-GAACGAG ACCUU-AA|- ---------- 4321 ---------- ---[CCU-GC UAAGUAGcgg caaauacgau acauucuuag guaa-gauug 4381 aaccugguug auu--ugcuc ----auuucg aag-ug-cac gcauga-gga ucgggauuau 4441 gug-acgcgu cagu(uuuuu ucugccgauu u)acugaugc agcacauauu ucucguucuu 4501 ucauucgugc acuucga-aa uaa------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- gca---aauc aaccagguuc 4621 -aauuuuacc uaagaaugug uuucauuugc uugauug--- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- -----uaaag CU-------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------U CUUAGAGG]- --|------- ---------- AACA-GUG-U -G-U(----- 5041 --GUGUA-)A CACA-A-GGA AGUU-UAAGG CAACAAaaCA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ---cCUG-CG A|UGUC|CUU 5221 A-G-A-UGAA CUAG-GAAGC --CCCGUGCU ACACG--G-A UAUGU----- ---------- 5281 ---------- -----[gcaa cgaguug--- ---------- -----uuaga agugugcaug 5341 ug-uuauuug ugcu-uaug( -gagc)cguu uagcau-ca- ---ucgcaug ---------c 5401 uuuuccu-cc acu(gaaa-) agugu----a gguaauauuu aucagu]--- ---------- 5461 -------ACG UAU-C-G--- UGAU-G-AGG AUAuau---( UGCAAUUA)u caaucUCG-A 5521 CCGAGG-AAC G--UCUAGUA AG-CGG-GAU (-UCACCAG- )AUUGC-G-C -UGACUACG- 5581 U-CCCUGCGC UU|UGUA-CA CACCGCCCGU CGCUCC-U-A CC-GAU--UG GA-AGAUac- 5641 gau-gaau-- cgu-uugaa- uaag-agaa- aagg-ggau- ---------- ---------- 5701 -------(ua uauauc)--- ---------- ---------- ---------- ---u-uuu-- 5761 uuuuuc-ucu -gaaa-|gaa -ucgaaaauc cu-AUC-U-U UUAa-AGGAA GG-AGAA-g- 5821 ucg~~~~~~~ ~~-------- -----~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5881 ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS +++PARTIAL 5903 bp RNA RNA 25-JAN-1995 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: DIVIDER BASE COUNT 0 a 0 c 0 g 0 t 5903 others ORIGIN 1 |......... .......... .......... .......... .-........ .......... 61 .......... .......... .-........ ..|....... |......... .......... 121 .......... .......... .......... .......... .....-.... .......... 181 .......... ..|....... .......... .......... .......... .......... 241 .......... .......... .......... .......... .......... .......... 301 .......... .......... .......... .......... .......... .......... 361 .......... .......... .......... .......... .......... .......... 421 .......... .......... .......... .......... .......... .......... 481 .......... .......... .......... .......... .......... .......... 541 .......... .......... .......... .......... .......... .......... 601 .......... .......... .......... .......... .......... .......... 661 .......... .......... .......... .......... .......... .......... 721 .......... .......... .......... .......... .......... .......... 781 .......... .......... .......... .......... .......... .......... 841 .......... .......... .......... .......... .......... .......... 901 .......... .......... .......... .......... .......... .......... 961 .......... .......... .......... .......... .......... .......... 1021 .......... .......... .......... .......... .......... .......... 1081 .......... .......... ...|...... .......... .......... .-........ 1141 .......... .......... .......... ...|...... .......... .......... 1201 .......... .......... .......... .......... ....-..... .....-.... 1261 .......... .........| .......... .......... .......... .......... 1321 .......... .|........ ....-..... .......... .......... .......... 1381 .....|.... .......... .......... .......... .......... .......... 1441 .......... .......... .......... .......... .......... .......... 1501 .......... .......... .......... .-----.... .......... .....>.... 1561 .......... .......... .......... .......... .......... ..-|...... 1621 ........|. .......... .........| .......... .......... .......... 1681 .......... .......... .......... .......... .......... .|........ 1741 .......... .-........ .......... .......... ......-... .......... 1801 ..-....... ..-....-.. .......... .......... .......... .......... 1861 .......... .-........ .......... .......... .......... .......... 1921 .......... .......... .......... .......... .......... .......... 1981 .......... .......... .......... .......... .......... .......... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... .......... .......... .......... .......... .......... 2161 .......... .......... .......... .......... .......... .......... 2221 .......... .......... .......... .......... .......... .......... 2281 .......... .......... .......... .......... .......... .......... 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... ....-..... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... .......... 2701 .......... .......... .......... .......... .......... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ..---..... 2881 .......... .......... .......... .......... .......... .......... 2941 .......... .......... .......... .......... .....|.... .......... 3001 .......... ...--..... .......... .......... .......... .......... 3061 .......... .......... .......... .....|.... .........| ..-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------... .......... ....-.|... .......... 3301 .......... .......... ....------ ---------- ---------- ---------- 3361 ---------. .......... .......... .......... .......... ...|...... 3421 .......... .......... .......... .......... .......... .......... 3481 .......... .......... .......... .......... .......... .......... 3541 .......... .......... .......... .......... .......... .......... 3601 .......... .......... .......... .......... .......... .......... 3661 .......... .......... .......|.. .......... .......... .......... 3721 .......... -......... ....|..... .......... .......... ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --....|... 4021 ........|. .......... .......-.. .......... .......... .......... 4081 .......... ..-----... .......... .-..--.... .....----- ...-...... 4141 .......... .]........ |......... .......... .......... .......... 4201 .......... ...|...... .......... ....|..... .........- .......... 4261 .-........ .......... .......... ..-....... .......... .......... 4321 .......... .......... .......... .......... .......... .......... 4381 .......... .......... .......... ...-...... .......... .......... 4441 --........ .......... .......... .......... .......... .......... 4501 .......... .......... .......... .......... .......... .......... 4561 .......... .......... .......... .......... .......... .......... 4621 .......... .......... .......... .......... .......... .......... 4681 .......... .......... .......... .......... .......... .......... 4741 .......... .......... .......... .......... .......... .......... 4801 .......... .......... .......... .......... .......... .......... 4861 .......... .......... .......... .......... .......... .......... 4921 .......... .......... .......... .......... .......... .......... 4981 .......... .......... .......... .......... .......... .......... 5041 .......... .......... .......... .......... ...------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ---....... .|....|... 5221 .......... .......... .......... .......... .......... .......... 5281 ....-..... .......... .......... .......... .......... .......... 5341 .......... .......... .......... .......... .......... .......... 5401 .......... .......... .......... .......... .......... .......... 5461 .......... .....-..-- ....-.-... .......... .......... .......... 5521 .......... .-........ .......... .-........ .......... .......... 5581 .......... ..|....... .......... .......... .......... .......... 5641 ...-.....- .......... .......... .......... .......... .......... 5701 ......-... .......... .......... .......... .......... ........-. 5761 .......... ......|... .......... .......... .......... .......... 5821 .......... .......... .......... .......... .......... .......... 5881 .......... ........|| ||| // LOCUS P.flor.p 5903 bp RNA RNA 11-JAN-191 DEFINITION Plasmodium floridense. ACCESSION No information KEYWORDS No information. SOURCE Plasmodium floridense. ORGANISM Plasmodium floridense. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: L11717 LOCUS P.floridense 1917 bp ds-DNA INV 03-JAN-1994 DEFINITION Plasmodium floridense 18S ribosomal RNA. ACCESSION L11717 KEYWORDS 18S ribosomal RNA. SOURCE Plasmodium floridense erythrocytic form DNA. ORGANISM Plasmodium floridense Eukaryota; Animalia; Protozoa; Apicomplexa; Sporozoasida; Coccidiasina; Eucoccidiida; Haemosporina; Plasmodiidae. REFERENCE 1 (bases 1 to 1917) AUTHORS Dame,J.B., Telford,S.R.Jr.., Yowell,C.A., Higgins,D. and McCutchan,T.F. TITLE Unknown at present JOURNAL Unpublished (1993) STANDARD full automatic FEATURES Location/Qualifiers rRNA <1..>1917 /product="18S ribosomal RNA" /gene="18S rRNA" /note="putative" source 1..1917 /organism="Plasmodium floridense" /dev_stage="erythrocytic form" /sequenced_mol="DNA" BASE COUNT 628 a 279 c 379 g 631 t ORIGIN BASE COUNT 628 a 279 c 379 g 631 t 3986 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~(~~~)~~ ~~|~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~|~~~~~~~ |~~~~~~~~~ ~~~~[~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~]~~~~~~ 181 ~~~~~|~~~~ ~~|~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~<~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 ~>~~~~~~~~ ~~~~~~~~~( ~~~~~~~)~~ ~~~~~~UAA- UACUUG---- ---------- 361 ---------- ---------- ---------- -- -guaucaauc -ga|guuucu ga|--CCU-A UCA--GCUUU U-GAUGUUA- 1141 GG(-GUAUUG G)CCU-AACA U-|GGCUA-U GAC|GGGU-A A-CGGG|GAA -U-(UAGA-) 1201 GUU-CGAUU- CCG|GAGAGG G-AGCC(U-G AGAAAU)AGC UACC-ACAUC (UAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GU- AAAUU-ACCC -AAUUCU-A( ---aaa--)A 1321 AGAG-A-GGU -|A|GUGACA AGAA-AU--- ---------- ---------- ---------- 1381 -----|---- ---------- ---------- ---------- ---------- ---------- 1441 --------AA CGAUGCAAG- -GCCA(---- --aauuu)UG GU-UU-UGCA A-UUGGAAU- 1501 ------GAUA ----GGAAUU -UAAA--AAC U-----UC-C U-AAA-GUAA C---->AAUU 1561 GGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCCAA 1621 U-AGCGUA|U AUUAA--AAU UGUUG-CAG| UUA--AAACG CUCGUAGUUG |--------- 1681 ---------- ---------- ---------- ---------- ---------- -|-------< 1741 aacuucaaag a-aucu-auu ucuaagg-aa uacauuauug gaccgc-gca uuuauauaaa 1801 gg-au---ug cg-uuuu-aa cgcuuu-acu -uaauacuug auu------- ---------- 1861 --cuucaaua a-guauuucu uaaaauaaau aaugguucuu uuuaaaaaa- uua-uuuuuu 1921 --gcauauuu uu-uaugcaa uua---gaau uuuu------ ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- --UGUUACUU UG-AGUA--A 2461 AUUAGAGUGU UC-AA-AG-C AAACaguua- ---------- ---------- -----aaaca 2521 guuuuacugU GUU--U--GA AUACUA-CAG CAUGGAA|UA -ACAAAA-UU -GAACaAGUC 2581 aa-------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- -----ga-ug auau|guu-c 2821 -uu-uauccu -ua-uu---- --------uu GGC-UUaGUU A--CGAUUAA CA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGAG|UAGU U--------- 3001 --UGGGGACA UU|--AGUAU UCAGAAG-UC -AGAG(GU-G AAA---)UUC U-UAGA-U-U 3061 UUCUG-GAG- A-CUAACA-A CUGC(-GAAA )--GC|A--- UUUGUC-UA| AA-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUA ---UUUCCAU -UAA-U|CA- A-GAACGAAA 3301 GUUAAGGGA- GUGAAGACG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CGUAA|UCU UA--ACC-AU AAACUAUGCC GAC|UA|--- 3421 --GGUGU-UG GAU-G-A--- ----(----- ---------) aaguguaaaa aa--uaagaa 3481 auguuccaac guaacaauug gaauauuucu uagcuugcu- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------U C-CU-UCA-G -U-ACCuu-- ---------- ----auGA(- 3661 GAAA-)UCa- -AAGUC-uuu gGGU|-U|C- UGGGGCGAGU AU--UC-GC( --GCAA-)GC 3721 GAG-AAAGUU -AAAA--GAA -UUG|AC-GG -AA-GGGCA- -CCAC-CAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --C-GU|-GG 4021 AGCUUGCG|G CU-UAAUUCG (ACUCAA-CA )CGGG--AAA ACUCACUAGU UU[aag-aca 4081 agag-uagga uu-----gac aga(uuaaua g-c)------ ucuuu----- cuu-gauu-u 4141 cuugga---- -]-------- |--------- ---------- ---------- ---------- 4201 ---------- ---|UA-GU- GAU-G-CAUG |GCC|GU-UU UUA|GUUCG- U|GAA(UAUG 4261 A-)UUUGUC- -UGG(UU-AA UU)CCGAUA- AC-GAACGAG AUCUU-AA|- ---------- 4321 ---------- ---[CCU-GC UAAUUAGcgg uaaauacgug auauucuuau aaca-aauug 4381 uauaucg--- ----aauaga aaacauauaa aag-uugaaa auauuagaau -acuauuauu 4441 --guauucuu uucccuuuuc uucucuuugu aguuuucugu ucuuuuacuu uuuaauguaa 4501 gaauguauuu acuugauugu aaagcu---- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- ---------- ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------U CUUAGAGG]- --|------- ---------- GACA-UUG-U -G-U(----- 5041 --GUCUA-)A CACA-A-GGA AGUU-UAAGG CAACAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UG A|UGUC|CUU 5221 A-G-A-UAAA CUAG-GCUGC A-CGCGUGCU ACACU--G-A UAUAU----- ---------- 5281 ---------- -----[auaa cgaguua--- ---------- -----uuaaa aa---uauau 5341 ----cuuugu auauauauau auuucuauau auguauauuc auaugauaua a--------- 5401 uuuuccu-uc acu(gaaa-) agugu----a ggcaaucuuu aucaau]--- ---------- 5461 -------AUA UAU-C-G--- UGAU-G-GGG AUAGAUUAU( UGCAAUUA)U UAAUCUUA-A 5521 ACGAGG-AAU G--CCUAGUA AG-CAU-GAU (-UCAUCAG- )AUUGU-G-C -UGACUACG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUCC-U-A CC-GAU--UG AA-AGAUau- 5641 gau-gaau-- ugu-uugga- caag-aaga- aaaa-gau-- ---------- ---------- 5701 -------(uu au----)--- ---------- ---------- ---------- --au-uuu-- 5761 -uuucuuuuu -ggaa-|aaa -ucguaaau~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~)~~~~~~~~ ~~~~~~~~~~ 5881 ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS P.mexi.p 5903 bp RNA RNA 11-JAN-191 DEFINITION Plasmodium mexicanum. ACCESSION No information KEYWORDS No information. SOURCE Plasmodium mexicanum. ORGANISM Plasmodium mexicanum. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: L11716 LOCUS PFARG18S 1978 bp ds-DNA INV 04-MAR-1993 DEFINITION Plasmodium mexicanum 18S rRNA gene, partial gene. ACCESSION L11716 KEYWORDS 18S ribosomal RNA; ribosomal RNA. SOURCE Plasmodium mexicanum erythrocytic form DNA. ORGANISM Plasmodium mexicanum Eukaryota; Animalia; Protozoa; Apicomplexa; Sporozoa; Coccidia; Eucoccidiida; Haemosporina; Plasmodiidae. REFERENCE 1 (bases 1 to 1978) AUTHORS Dame,J.B., Yowell,C.A., Telford,S.R.Jr.., Higgins,D. and McCutchan,T.F. JOURNAL Unpublished (1993) STANDARD full automatic FEATURES Location/Qualifiers rRNA <1..>1978 /product="18S ribosomal RNA" /evidence="EXPERIMENTAL" BASE COUNT 682 a 265 c 365 g 666 t ORIGIN BASE COUNT 682 a 265 c 365 g 666 t 3925 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~(~~~)~~ ~~|~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~|~~~~~~~ |~~~~~~~~~ ~~~~[~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~]~~~~~~ 181 ~~~~~|~~~~ ~~|~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~<~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 ~>~~~~~~~~ ~~~~~~~~~( ~~~~~~~)~~ ~~~~~~UAA- UACUUG---- ---------- 361 ---------- ---------- ---------- -- -guaucaauc -ga|guuucu ga|--CCU-A UCA--GCUUU U-GAUGUUA- 1141 GG(-GUAUUG G)CCU-AACA U-|GGCUA-U GAC|GGGU-A A-CGGG|GAA -U-(UAGA-) 1201 GUU-CGAUU- CCG|GAGAGG G-AGCC(U-G AGGAAU)AGC UACC-ACAUC (UAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GU- AAAUU-ACCC -AAUUCU-A( ---aag--)A 1321 AGAG-A-GGU -|A|GUGACA AGAA-AU--- ---------- ---------- ---------- 1381 -----|---- ---------- ---------- ---------- ---------- ---------- 1441 --------AA CAAUGCAAG- -GCCA(---- --aauuu)UG GU-UU-UGCA A-UUGGAAU- 1501 ------GAUA ----GGAAUU -UAAA--AAC U-----UC-C U-AAA-GUAA C---->AAUU 1561 GGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCCAA 1621 U-AGCGUA|U AUUAA--AAU UGUUG-CAG| UUA--AAACG CUCGUAGUUG |--------- 1681 ---------- ---------- ---------- ---------- ---------- -|-------< 1741 aauaucaaaa a-aucuaaau uuuauua-aa ucuauuuuuu ucuuau-uuu uuucugcuua 1801 uu-aa---aa ug-uggu-au cuucgg-aua -cccgauuua auuugcauaa agaaaacuau 1861 aggaaaaaaa a-uaugauuu cuuaaauuua aaaagauuuu uuuuaaagau ua-uuuauua 1921 cauauguuuu cuaaauauau gugaugacaa uuuu------ ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- --UGUUACUU UG-AGUA--A 2461 AUUAGAGUGU UC-AA-AG-C AUGCaguua- ---------- ---------- ------aaac 2521 aguuaucugU GUA--U--GA AUACUA-UAG CAUGGAA|UA -GCAGAA-UU -GAACaAGCU 2581 aa-------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- -----aa-uu u--u|guu-c 2821 -uauuuuuuu -ua-uu---- --------uu GGC-UUaGUU A--CGAUUAA UA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGAG|UAGU U--------- 3001 --UGGAGGCA UU|--AGUAU UCAGAUG-UU -AGAG(GU-G AAA---)UUC U-UAGA-U-U 3061 UUCUG-GAG- A-CUAACA-A CUGC(-GAAA )--GC|A--- UUUGCC-UA| AA-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUA ---CUUCCAU -UAA-U|CA- A-GAACGAAA 3301 GUUAAGGGA- GUGAAGACG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CGUAA|UCU UA--ACC-AU AAACUAUGCC GAC|UA|--- 3421 --GGUGU-UG GAU-G-A--- ----(----- ---------) aaguguaaaa aauaaaaaau 3481 auuuauuauu caagucccug auuugaacau auaaauauuu uuuagauugc u--------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------U C-CU-UCA-G -U-ACCuu-- ---------- ----auGA(- 3661 GAAA-)UCa- -AAGUC-uuu gGGU|-U|C- UGGGGCGAGU AU--UC-GC( --GCAA-)GC 3721 GAG-AAAGUU -AAAA--GAA -UUG|AC-GG -AA-GGGCA- -CCAC-CAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --C-GU|-GG 4021 AGCUUGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--AAA ACUCACUAGU UU[aag-aca 4081 agag-uagga uu-----gac aga(uuaaua g-c)------ ucuuu----- cuu-gauu-u 4141 cuugga---- -]-------- |--------- ---------- ---------- ---------- 4201 ---------- ---|UG-GU- GAU-G-CAUG |GCC|GU-UU UUA|GUUCG- U|GAA(UAUG 4261 A-)UUUGUC- -UGG(UU-AA UU)CCGAUA- AC-GAACGAG AUCUU-AA|- ---------- 4321 ---------- ---[CCU-GC UAACUAGcgg uaaauaugcu auauucauau agaa-aaagg 4381 gaaaacugga aauua----- --auaaguaa uaa-uagaaa aaauuaggau -gcuauauau 4441 --uaauuuau auaaauuccu uuuuuuuuac uaucauuu-- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- -------acu auauuuauuu uuuuguuauc 4621 ucuuuuacua uaugaaugu- ----auuuac uugauug--- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- -----uaaaG CU-------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------U CUUAGAGG]- --|------- ---------- GACA-UUG-C -G-U(----- 5041 --GUCUA-)A CGCA-A-GGA AGUU-UGAGG CAACAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UG A|UGUC|CUU 5221 A-G-A-UGAA CUAG-GCUGC A-CGCGUGCU ACAAU--G-A UAUAU----- ---------- 5281 ---------- -----[auaa cgaguuu--- ---------- -----uaaaa aa---uauau 5341 -uuuuuuaca uauaauaug( -uuua)caua uauuauguaa aaaagauaua a--------- 5401 uuuuccu-uc acu(gaaa-) agugu----a ggcaaucuuu aucaau]--- ---------- 5461 -------AUA UAU-C-G--- UAAU-G-GGG AUAGAUUAU( UGCAAUUA)U UAAUCUUG-A 5521 ACGAGG-AAU G--CCUAGUA AG-CAU-AAU (-UCAUCAG- )AUUGU-G-C -UGACUACG- 5581 U-CCCUGCCC UU|UGCA-CA CACCGCCCGU CGCUCC-U-A CC-GAU--UG AA-AGAUau- 5641 gau-gaau-- ugu-uugga- caag-aaaa- aaca-aaau- ---------- ---------- 5701 -------(uu au----)--- ---------- ---------- ---------- -auu-uug-- 5761 uuuuuu-uuu -gaaa-|aaa -ccguaaaun nn-nnn-n-n nnnn-nnnnn nn-nnnn-n- 5821 nnnnnnnnnn nn-------- -----n-n-n nnnnnn(nnn n)nnnnnnnn nnnnnnn--- 5881 --nnn~~~~~ ~~~~~~~~|| ||| // LOCUS (5)-Piropl 5903 bp RNA RNA 13-JAN-1999 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: DIVIDER BASE COUNT 0 a 0 c 0 g 0 t 5903 others ORIGIN 1 |......... .......... .......... .......... .......... .......... 61 .......... .......... .......... .......... .......... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......... .......... .......... .......... 241 .......... .......... .......... .......... .......... .......... 301 .......... .......... .......... .......... .......... .......... 361 .......... .......... .......... .......... .......... .......... 421 .......... .......... .......... .......... .......... .......... 481 .......... .......... .......... .......... .......... .......... 541 .......... .......... .......... .......... .......... .......... 601 .......... .......... .......... .......... .......... .......... 661 .......... .......... .......... .......... .......... .......... 721 .......... .......... .......... .......... .......... .......... 781 .......... .......... .......... .......... .......... .......... 841 .......... .......... .......... .......... .......... .......... 901 .......... .......... .......... .......... .......... .......... 961 .......... .......... .......... .......... .......... .......... 1021 .......... .......... .......... .......... .......... .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .......... .......... .......... .......... .......... 1201 .......... .......... .......... .......... .......... .......... 1261 .......... .......... .......... .......... .......... .......... 1321 .......... .......... .......... .......... .......... .......... 1381 .......... .......... .......... .......... .......... .......... 1441 .......... .......... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .....>.... 1561 .......... .......... .......... .......... .......... ..-|...... 1621 .......... .......... .......... .......... .......... .......... 1681 .......... .......... .......... .......... .......... .......... 1741 .......... .......... .......... .......... .......... .......... 1801 .......... .......... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .......... .......... 1921 .......... .......... .......... .......... .......... .......... 1981 .......... .......... .......... .......... .......... .......... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... .......... .......... .......... .......... .......... 2161 .......... .......... .......... .......... .......... .......... 2221 .......... .......... .......... .......... .......... .......... 2281 .......... .......... .......... .......... .......... .......... 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... .......... 2701 .......... .......... .......... .......... .......... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... .......... 2881 .......... .......... .......... .......... .......... .......... 2941 .......... .......... .......... .......... .......... .......... 3001 .......... .......... .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .......... .......... 3181 .......... .......... .......... .......... .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .......... .......... .......... 3361 .......... .......... .......... .......... .......... .......... 3421 .......... .......... .......... .......... .......... .......... 3481 .......... .......... .......... .......... .......... .......... 3541 .......... .......... .......... .......... .......... .......... 3601 .......... .......... .......... .......... .......... .......... 3661 .......... .......... .......... .......... .......... .......... 3721 .......... .......... .......... .......... .......... .......... 3781 .......... .......... .......... .......... .......... .......... 3841 .......... .......... .......... .......... .......... .......... 3901 .......... .......... .......... .......... .......... .......... 3961 .......... .......... .......... .......... .......... .......... 4021 .......... .......... .......... .......... .......... .......... 4081 .......... .......... .......... .......... .......... .......... 4141 .......... .]........ .......... .......... .......... .......... 4201 .......... .......... .......... .......... .......... .......... 4261 .......... .......... .......... .......... .......... .......... 4321 .......... .......... .......... .......... .......... .......... 4381 .......... .......... .......... .......... .......... .......... 4441 .......... .......... .......... .......... .......... .......... 4501 .......... .......... .......... .......... .......... .......... 4561 .......... .......... .......... .......... .......... .......... 4621 .......... .......... .......... .......... .......... .......... 4681 .......... .......... .......... .......... .......... .......... 4741 .......... .......... .......... .......... .......... .......... 4801 .......... .......... .......... .......... .......... .......... 4861 .......... .......... .......... .......... .......... .......... 4921 .......... .......... .......... .......... .......... .......... 4981 .......... .......... .......... .......... .......... .......... 5041 .......... .......... .......... .......... .......... .......... 5101 .......... .......... .......... .......... .......... .......... 5161 .......... .......... .......... .......... .......... .......... 5221 .......... .......... .......... .......... .......... .......... 5281 .......... .......... .......... .......... .......... .......... 5341 .......... .......... .......... .......... .......... .......... 5401 .......... .......... .......... .......... .......... .......... 5461 .......... .......... .......... .......... .......... .......... 5521 .......... .......... .......... .-........ .......... .......... 5581 .......... .......... .......... .......... .......... .......... 5641 .......... .......... .......... .......... .......... .......... 5701 .......... .......... .......... .......... .......... .......... 5761 .......... .......... .......... .......... .......... .......... 5821 .......... .......... .......... .......... .......... .......... 5881 .......... ........|| ||| // LOCUS B.bigemi.A 5903 bp RNA RNA 11-JAN-191 DEFINITION Babesia bigemina. ACCESSION No information KEYWORDS No information. SOURCE Babesia bigemina. ORGANISM Babesia bigemina. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: X59604 LOCUS BBOSRRNAA 2141 bp ds-DNA INV 14-AUG-1991 DEFINITION B.bigemina gene A small subunit rRNA ACCESSION X59604 KEYWORDS ribosomal RNA gene; small subunit ribosomal RNA. SOURCE Babesia bigemia DNA. ORGANISM Babesia bigemia Eukaryota; Animalia; Protozoa; Microspora; Microsporea; Piroplasmia; Piroplasmida; Babesiidae. REFERENCE 1 (bases 1 to 2141) AUTHORS Reddy,G.R., Chakrabarti,D., Yowell,C.A. and Dame,J.B. TITLE Sequence microheterogeneity of the three small subunit ribosomal RNA genes of Babesia bigemina: Expression in erythrocyte culture JOURNAL Nucleic Acids Res. 19, 3641-3645 (1991) STANDARD full automatic COMMENT *source: strain=Mexico; *source: stage=erythrocytic culture; See also X59604, X56905 & X59607. From EMBL entry BBSRRNAA; dated 09-JUL-1991. FEATURES Location/Qualifiers rRNA 228..1920 /function="Component of small subunit ofribosome" /standard_name="Gene A" /note="The feature marked is the region of Gene Awhich encodes the mature small subunit rRNA." /product="Small subunit ribosomal RNA" /evidence=EXPERIMENTAL BASE COUNT 450 a 466 c 594 g 631 t ORIGIN BASE COUNT 416 a 340 c 440 g 505 t 4202 others ORIGIN 1 |~~~~~~uga auagcAACCU GGU(UGA)UC CU|GCCAGU- A-GUCA-UAU --GCUUGUCU 61 UAAA|-GAUU AA-GCCAUGC A-UGUCU-AA GU|------- |--------- ----[----- 121 ---------- --------ac aagcuu---u ---------- -uuac-ggu- gaa]------ 181 -----|---A CU|G-CGAA- UGGCU-CAUU ACAA-cagu- uau-aguu-- ----ucuuug 241 gagu<----- ---------- ---------- ---------- ---------- ----ucguuu 301 u>CCAUGG-A UAACCGUGC( -U-AAUU)GU AGGGC-UAA- UACAAG---- ----(----) 361 ---------- -------(-- --)--|---- -- -guuccauuc -aa|guuucu gc|--CCC-A UCA--GCUU- --GACGGUA- 1141 GG(-GUAUUG G)CCU-ACCG A-|GGCAG-C AAC|GGGU-A A-CGGG|GAA -U-(UAGG-) 1201 GUU-CGAUU- CCG|GAGAGG G-AGCC(U-G AGAAAC)GGC UACC-ACAUC (UAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GC- AAAUU-ACCC -AAUCCU-G( ---aca--)C 1321 AGGG-A-GGU -|A|GUGACA AGAA-AU--- ---------- -(----)--- ---------- 1381 -----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AA CAAUACAGG- -GC--(---- ---uuuc)-- GU-CU-UGUA A-UUGGAAU- 1501 ------GAUG ----GUGAUG -UACA--ACC U-----CA-C C-AGA-GUAC C---->AAUU 1561 GGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCCAA 1621 U-AGCGUA|U AUUAA--ACU UGUUG-CAG| UUA--AAAAG CUCGUAGUUG |--------- 1681 ---------- ---------- ---------- ---------- ---------- -|-------< 1741 uauuucagcc u-cgcg--uu uuuu-ccc(u uuuguu)ggg ucuuuu---c gcu-ggcuuu 1801 uu-------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- --UUUUACUU UG-AGAA--A 2461 AUUAGAGUGU UU-CA-AG-C AGACuuuu-- ---------- ---------- ---------- 2521 ---------- GUCU-U--GA AUACUU-CAG CAUGGAA|UA -AUAGAG-UA -GGACcuuGG 2581 uu-------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- -cua|--uuu 2821 --u-guuggu -uu-ug---- --------ag CCu-uG-GUA A--UGGUUAA UA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGAA|CGGU ---------- 3001 --UGGGGGCA UU|--CGUAU UUAACUG-UC -AGAG(GU-G AAA---)UUC U-UAGA-U-U 3061 UGUUA-AAG- A-CGAACC-A CUGC(-GAAA )--GC|A--- UUUGCC-AA| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------ACG ---UUUUCAU -UAA-U|CA- A-GAACGAAA 3301 GUUAGGGGA- UCGAAGACG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CGUAG|UCC UA--ACC-AU AAACUAUGCC GAC|UA|--- 3421 --gggau-ug gag-g-u--c guc-(----a uuuucc---) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- -----gac-u c-cu-uca-g -c-accuu-- ---------- ----gaGA(- 3661 GAAA-)UCa- -AAGUC-uuu gGGU|-U|C- UGGGGGGAGU AU--GG-UC( --GCAA-)GU 3721 CUG-AAACUU -AAAG--GAA -UUG|AC-GG -AA-GGGCA- -CCAC-CAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --C-GU|-GG 4021 AGCCUGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--GAA CCUCACCAGG UC[cag-aca 4081 gagu-aagga uu-----gac aga(uugaua g-c)------ ucuuu----- cuu-gauu-c 4141 uuuggg---- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU-G-CAUG |GCC|GU-UC UUA|GUUGG- U|GGA(-GUG 4261 A-)UUUGUC- -UGG(UU-AA UU)CCGUUA- AC-GAACGAG ACCUU-AA|- ---------- 4321 ---------- ---[CCU-GC UAACUAGcug c--uuggau- ---------g uu-------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- ---------- guccucg--- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- -----uuug- CU-------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------U CUUAGAGG]- --|------- ---------- GACU-CCU-G -U-G(----- 5041 -cuucaag)C GUGG-G-GGA AGUU-UAAGG CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UG A|UGCC|CUU 5221 A-G-A-UGUC CUGG-GCUGC A-CGCGCGCU ACACU--G-A UGCAU----- ---------- 5281 ---------- -----[ccau cgagu----- ---------- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- ---------- ---------- 5401 uuguccu-gu ccc(gaaa-) gggu-u--gg guaau-cuu- --uagu]--- ---------- 5461 -------GUG CAU-C-G--- UGUC-G-GGG AUUGAUUUU( UGCAAUUC)U AAAUCAUG-A 5521 ACGAGG-AAU G--CCUAGUA UG-CGC-AAG (-UCAUCAG- )CUUGU-G-C -AGAUUACG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUCC-U-A CC-GAU--CG AG-UGAUcc- 5641 ggu-gaau-- uau-ucgga- ccgu-ggcu- uuuc-cga-- ---------- ---------- 5701 -------(uu cg----)--- ---------- ---------- ---------- --uc-ggu-- 5761 uuugcc-uag -ggaa-|guu -uugugaacc uu-AUC-A-C UUAA-AGGAA GG-AGAA-G- 5821 UCGUAACAAG GU-------- -----U-U-C CGUAGG(UGA A)CCUGCGGA AGGAUCA--- 5881 --uuc~~~~~ ~~~~~~~~|| ||| // LOCUS B.bigemi.B 5903 bp RNA RNA 11-JAN-191 DEFINITION Babesia bigemia gene B. ACCESSION No information KEYWORDS No information. SOURCE Babesia bigemia gene B. ORGANISM Babesia bigemia gene B. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: X59605 LOCUS BBOSRRNAB 2141 bp ds-DNA INV 14-AUG-1991 DEFINITION B.bigemina gene B small subunit rRNA ACCESSION X59605 KEYWORDS ribosomal RNA gene; small subunit ribosomal RNA. SOURCE Babesia bigemia DNA. ORGANISM Babesia bigemia Eukaryota; Animalia; Protozoa; Microspora; Microsporea; Piroplasmia; Piroplasmida; Babesiidae. REFERENCE 1 (bases 1 to 2141) AUTHORS Reddy,G.R., Chakrabarti,D., Yowell,C.A. and Dame,J.B. TITLE Sequence microheterogeneity of the three small subunit ribosomal RNA genes of Babesia bigemina: Expression in erythrocyte culture JOURNAL Nucleic Acids Res. 19, 3641-3645 (1991) STANDARD full automatic COMMENT *source: strain=Mexico; *source: stage=erythrocytic culture; See also X59604, X56905 & X59607. From EMBL entry BBSRRNAB; dated 09-JUL-1991. FEATURES Location/Qualifiers rRNA 228..1920 /function="Component of small subunit ofribosome" /standard_name="Gene B" /note="The feature marked is the region of Gene Bwhich encodes the mature small subunit rRNA." /product="Small subunit ribosomal RNA" /evidence=EXPERIMENTAL BASE COUNT 450 a 466 c 594 g 631 t ORIGIN BASE COUNT 416 a 340 c 440 g 505 t 4202 others ORIGIN 1 |~~~~~~uga auagcAACCU GGU(UGA)UC CU|GCCAGU- A-GUCA-UAU --GCUUGUCU 61 UAAA|-GAUU AA-GCCAUGC A-UGUCU-AA GU|------- |--------- ----[----- 121 ---------- --------ac aagcuu---u ---------- -uuac-ggu- gaa]------ 181 -----|---A CU|G-CGAA- UGGCU-CAUU ACAA-cagu- uau-aguu-- ----ucuuug 241 gagu<----- ---------- ---------- ---------- ---------- ----ucguuu 301 u>CCAUGG-A UAACCGUGC( -U-AAUU)GU AGGGC-UAA- UACAAG---- ----(----) 361 ---------- -------(-- --)--|---- -- -guuccauuc -aa|guuucu gc|--CCC-A UCA--GCUU- --GACGGUA- 1141 GG(-GUAUUG G)CCU-ACCG A-|GGCAG-C AAC|GGGU-A A-CGGG|GAA -U-(UAGG-) 1201 GUU-CGAUU- CCG|GAGAGG G-AGCC(U-G AGAAAC)GGC UACC-ACAUC (UAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GC- AAAUU-ACCC -AAUCCU-G( ---aca--)C 1321 AGGG-A-GGU -|A|GUGACA AGAA-AU--- ---------- -(----)--- ---------- 1381 -----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AA CAAUACAGG- -GC--(---- ---uuuc)-- GU-CU-UGUA A-UUGGAAU- 1501 ------GAUG ----GUGAUG -UACA--ACC U-----CA-C C-AGA-GUAC C---->AAUU 1561 GGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCCAA 1621 U-AGCGUA|U AUUAA--ACU UGUUG-CAG| UUA--AAAAG CUCGUAGUUG |--------- 1681 ---------- ---------- ---------- ---------- ---------- -|-------< 1741 uauuucagcc u-cgcg--uu uuuu-ccc(u uuuguu)ggg ucuuuu---c gcu-ggcuuu 1801 uu-------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- --UUUUACUU UG-AGAA--A 2461 AUUAGAGUGU UU-CA-AG-C AGACuuuu-- ---------- ---------- ---------- 2521 ---------- GUCU-U--GA AUACUU-CAG CAUGGAA|UA -AUAGAG-UA -GGACcuuGG 2581 uu-------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- -cua|--uuu 2821 --u-guuggu -uu-ug---- --------ag CCu-uG-GUA A--UGGUUAA UA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGAA|CGGU ---------- 3001 --UGGGGGCA UU|--CGUAU UUAACUG-UC -AGAG(GU-G AAA---)UUC U-UAGA-U-U 3061 UGUUA-AAG- A-CGAACC-A CUGC(-GAAA )--GC|A--- UUUGCC-AA| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------ACG ---UUUUCAU -UAA-U|CA- A-GAACGAAA 3301 GUUAGGGGA- UCGAAGACG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CGUAG|UCC UA--ACC-AU AAACUAUGCC GAC|UA|--- 3421 --gggau-ug gag-g-u--c guc-(----a uuuucc---) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- -----gac-u c-cu-uca-g -c-accuu-- ---------- ----gaGA(- 3661 GAAA-)UCa- -AAGUC-uuu gGGU|-U|C- UGGGGGGAGU AU--GG-UC( --GCAA-)GU 3721 CUG-AAACUU -AAAG--GAA -UUG|AC-GG -AA-GGGCA- -CCAC-CAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --C-GU|-GG 4021 AGCCUGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--GAA CCUCACCAGG UC[cag-aca 4081 gagu-aagga uu-----gac aga(uugaua g-c)------ ucuuu----- cuu-gauu-c 4141 uuuggg---- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU-G-CAUG |GCC|GU-UC UUA|GUUGG- U|GGA(-GUG 4261 A-)UUUGUC- -UGG(UU-AA UU)CCGUUA- AC-GAACGAG ACCUU-AA|- ---------- 4321 ---------- ---[CCU-GC UAACUAGcug c--uuggau- ---------g uu-------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- ---------- guccucg--- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- -----uuug- CU-------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------U CUUAGAGG]- --|------- ---------- GACU-CCU-G -U-G(----- 5041 -cuucaag)C GUGG-G-GGA AGUU-UAAGG CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UG A|UGCC|CUU 5221 A-G-A-UGUC CUGG-GCUGC A-CGCGCGCU ACACU--G-A UGCAU----- ---------- 5281 ---------- -----[ccau cgagu----- ---------- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- ---------- ---------- 5401 uuguccu-gu ccc(gaaa-) gggu-u--gg guaau-cuu- --uagu]--- ---------- 5461 -------GUG CAU-C-G--- UGUC-G-GGG AUUGAUUUU( UGCAAUUC)U AAAUCAUG-A 5521 ACGAGG-AAU G--CCUAGUA UG-CGC-AAG (-UCAUCAG- )CUUGU-G-C -AGAUUACG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUCC-U-A CC-GAU--CG AG-UGAUcc- 5641 ggu-gaau-- uau-ucgga- ccgu-ggcu- uuuc-cga-- ---------- ---------- 5701 -------(uu cg----)--- ---------- ---------- ---------- --uc-ggu-- 5761 uuugcc-uag -ggaa-|guu -uugugaacc uu-AUC-A-C UUAA-AGGAA GG-AGAA-G- 5821 UCGUAACAAG GU-------- -----U-U-C CGUAGG(UGA A)CCUGCGGA AGGAUCA--- 5881 --uuc~~~~~ ~~~~~~~~|| ||| // LOCUS B.bigemi.C 5903 bp RNA RNA 11-JAN-191 DEFINITION Babesia bigemia gene C. ACCESSION No information KEYWORDS No information. SOURCE Babesia bigemia gene C. ORGANISM Babesia bigemia gene C. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: X59607 LOCUS BBOSRRNAC 2141 bp ds-DNA INV 14-AUG-1991 DEFINITION B.bigemina gene C small subunit rRNA ACCESSION X59607 KEYWORDS ribosomal RNA gene; small subunit ribosomal RNA. SOURCE Babesia bigemia DNA. ORGANISM Babesia bigemia Eukaryota; Animalia; Protozoa; Microspora; Microsporea; Piroplasmia; Piroplasmida; Babesiidae. REFERENCE 1 (bases 1 to 2141) AUTHORS Reddy,G.R., Chakrabarti,D., Yowell,C.A. and Dame,J.B. TITLE Sequence microheterogeneity of the three small subunit ribosomal RNA genes of Babesia bigemina: Expression in erythrocyte culture JOURNAL Nucleic Acids Res. 19, 3641-3645 (1991) STANDARD full automatic COMMENT *source: strain=Mexico; *source: stage=erythrocytic culture; See also X59604, X56905 & X59607. From EMBL entry BBSRRNAC; dated 09-JUL-1991. FEATURES Location/Qualifiers rRNA 228..1920 /function="Component of small subunit ofribosome" /standard_name="Gene C" /note="The feature marked is the region of Gene Cwhich encodes the mature small subunit rRNA." /product="Small subunit ribosomal RNA" /evidence=EXPERIMENTAL BASE COUNT 451 a 463 c 595 g 632 t ORIGIN BASE COUNT 416 a 340 c 440 g 505 t 4202 others ORIGIN 1 |~~~~~~uga auagcAACCU GGU(UGA)UC CU|GCCAGU- A-GUCA-UAU --GCUUGUCU 61 UAAA|-GAUU AA-GCCAUGC A-UGUCU-AA GU|------- |--------- ----[----- 121 ---------- --------ac aagcuu---u ---------- -uuac-ggu- gaa]------ 181 -----|---A CU|G-CGAA- UGGCU-CAUU ACAA-cagu- uau-aguu-- ----ucuuug 241 gagu<----- ---------- ---------- ---------- ---------- ----ucguuu 301 u>CCAUGG-A UAACCGUGC( -U-AAUU)GU AGGGC-UAA- UACAAG---- ----(----) 361 ---------- -------(-- --)--|---- -- -guuccauuc -aa|guuucu gc|--CCC-A UCA--GCUU- --GACGGUA- 1141 GG(-GUAUUG G)CCU-ACCG A-|GGCAG-C AAC|GGGU-A A-CGGG|GAA -U-(UAGG-) 1201 GUU-CGAUU- CCG|GAGAGG G-AGCC(U-G AGAAAC)GGC UACC-ACAUC (UAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GC- AAAUU-ACCC -AAUCCU-G( ---aca--)C 1321 AGGG-A-GGU -|A|GUGACA AGAA-AU--- ---------- -(----)--- ---------- 1381 -----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AA CAAUACAGG- -GC--(---- ---uuuc)-- GU-CU-UGUA A-UUGGAAU- 1501 ------GAUG ----GUGAUG -UACA--ACC U-----CA-C C-AGA-GUAC C---->AAUU 1561 GGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCCAA 1621 U-AGCGUA|U AUUAA--ACU UGUUG-CAG| UUA--AAAAG CUCGUAGUUG |--------- 1681 ---------- ---------- ---------- ---------- ---------- -|-------< 1741 uauuucagcc u-cgcg--uu uuuu-ccc(u uuuguu)ggg ucuuuu---c gcu-ggcuuu 1801 uu-------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- --UUUUACUU UG-AGAA--A 2461 AUUAGAGUGU UU-CA-AG-C AGACuuuu-- ---------- ---------- ---------- 2521 ---------- GUCU-U--GA AUACUU-CAG CAUGGAA|UA -AUAGAG-UA -GGACcuuGG 2581 uu-------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- -cua|--uuu 2821 --u-guuggu -uu-ug---- --------ag CCu-uG-GUA A--UGGUUAA UA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGAA|CGGU ---------- 3001 --UGGGGGCA UU|--CGUAU UUAACUG-UC -AGAG(GU-G AAA---)UUC U-UAGA-U-U 3061 UGUUA-AAG- A-CGAACC-A CUGC(-GAAA )--GC|A--- UUUGCC-AA| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------ACG ---UUUUCAU -UAA-U|CA- A-GAACGAAA 3301 GUUAGGGGA- UCGAAGACG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CGUAG|UCC UA--ACC-AU AAACUAUGCC GAC|UA|--- 3421 --gggau-ug gag-g-u--c guc-(----a uuuucc---) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- -----gac-u c-cu-uca-g -c-accuu-- ---------- ----gaGA(- 3661 GAAA-)UCa- -AAGUC-uuu gGGU|-U|C- UGGGGGGAGU AU--GG-UC( --GCAA-)GU 3721 CUG-AAACUU -AAAG--GAA -UUG|AC-GG -AA-GGGCA- -CCAC-CAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --C-GU|-GG 4021 AGCCUGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--GAA CCUCACCAGG UC[cag-aca 4081 gagu-aagga uu-----gac aga(uugaua g-c)------ ucuuu----- cuu-gauu-c 4141 uuuggg---- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU-G-CAUG |GCC|GU-UC UUA|GUUGG- U|GGA(-GUG 4261 A-)UUUGUC- -UGG(UU-AA UU)CCGUUA- AC-GAACGAG ACCUU-AA|- ---------- 4321 ---------- ---[CCU-GC UAACUAGcug c--uuggau- ---------u gu-------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- ---------- guccucg--- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- -----uuug- CU-------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------U CUUAGAGG]- --|------- ---------- GACU-CCU-G -U-G(----- 5041 -cuucaag)C GUGG-G-GGA AGUU-UAAGG CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UG A|UGCC|CUU 5221 A-G-A-UGUC CUGG-GCUGC A-CGCGCGCU ACACU--G-A UGCAU----- ---------- 5281 ---------- -----[ccau cgagu----- ---------- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- ---------- ---------- 5401 uuguccu-gu ccc(gaaa-) gggu-u--gg guaau-cuu- --uagu]--- ---------- 5461 -------GUG CAU-C-G--- UGUC-G-GGG AUUGAUUUU( UGCAAUUC)U AAAUCAUG-A 5521 ACGAGG-AAU G--CCUAGUA UG-CGC-AAG (-UCAUCAG- )CUUGU-G-C -AGAUUACG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUCC-U-A CC-GAU--CG AG-UGAUcc- 5641 ggu-gaau-- uau-ucgga- ccgu-ggcu- uuuc-cga-- ---------- ---------- 5701 -------(uu cg----)--- ---------- ---------- ---------- --uc-ggu-- 5761 uuugcc-uag -ggaa-|guu -uugugaacc uu-AUC-A-C UUAA-AGGAA GG-AGAA-G- 5821 UCGUAACAAG GU-------- -----U-U-C CGUAGG(UGA A)CCUGCGGA AGGAUCA--- 5881 --uuc~~~~~ ~~~~~~~~|| ||| // LOCUS B.bovis.B 5903 bp RNA RNA 11-JAN-191 DEFINITION Babesia bovis subsp. (strain Samford). ACCESSION No information KEYWORDS No information. SOURCE Babesia bovis subsp. (strain Samford). ORGANISM Babesia bovis. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: M87566 LOCUS BBORRNAB 1573 bp ds-DNA INV 24-MAY-1992 DEFINITION Babesia bovis ribosomal RNA gene sequence. ACCESSION M87566 KEYWORDS ribosomal RNA gene. SOURCE Babesia bovis (strain Samford) DNA. ORGANISM Babesia bovis Eukaryota; Animalia; Protozoa; Microspora; Microsporea; Piroplasmia; Piroplasmida; Babesiidae. REFERENCE 1 (bases 1 to 1573) AUTHORS Ellis,J., Hefford,C., Baverstock,P. and Johnson,A. TITLE Ribosomal RNA sequence comparison of Babesia and Theileria JOURNAL Mol. Biochem. Parasitol. (1992) In press STANDARD simple staff_entry BASE COUNT 366 a 365 c 419 g 423 t ORIGIN BASE COUNT 366 a 365 c 419 g 423 t 4330 others ORIGIN 1 |~~~~~~~~~ ~~~~~nnnnn nnn(nnn)nn nn|nnnnnn- n-nnnn-nnn --nnUUGU-U 61 UAAA|-GACU AA-GCCAUGC A-UGUCU-AA GU|------- |--------- ----[----- 121 ---------- --------ac cagcuu---g ---------- -uuac-ggu- gaa]------ 181 -----|---A CU|G-CGAA- UGGCU-CAUU ACAA-cagu- uau-aguu-- ----ucuuug 241 gagu<----- ---------- ---------- ---------- ---------- ---ucacuuu 301 g>CUAUGG-A UAACCGC-C( -U-AAUU)GU GUGGC-UAA- UACACG---- ----(----) 361 ---------- -------(-- --)--|---- -- -auuccauuc -aa|guuu-u ga|--CCC-A UCA--GCUU- --GACGGUA- 1141 GG(-GUAUUG G)CCU-CCCG A-|GGCAU-C GAC|GGGU-A A-CGGG|GAA -U-(UAGG-) 1201 GUU-CGAUU- CCG|GAGAGG G-AGCC(U-G CGAGAC)GGC UACC-ACAUC (UAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-G--GC- AAAUU-ACCC -AAUCCU-G( ---aca--)C 1321 AGGG-A-GGU -|A|GUGACA AGAA-AU--- ---------- -(----)--- ---------- 1381 -----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AC CAAUACGGG- -GC--(---- ---uacu)-- GC-UC-UGUA A-UUGGCAU- 1501 -------GGG ----GCGACC -UUCA--CCC U-----CG-C C-CGA-GUAC C---->CAUU 1561 GGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCCAA 1621 U-AGCGUA|U AUUAA--ACU UGUUG-CAG| UUA--AAAAG CUCGUAGUUG |--------- 1681 ---------- ---------- ---------- ---------- ---------- -|-------< 1741 uacuuuaugu ---cccg-cc uu---agu-g cuucc--acu uug-----cg gg--ccgccu 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- --CGUUACUU UG-AGAA--A 2461 AUUAGAGUGU UU-CA-AG-C AGGUuu---- ---------- ---------- ---------- 2521 ---------- CGCC-U--GU AUAAUU-GAG CAUGGAA|UA -ACCUUG-UA -UGACcCcuG 2581 uc-------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- -gua|----- 2821 -cc-guuggu -u-------- --------gg CuuuGG-GUA A--UGGUUAA UA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGAA|CGGU ---------- 3001 --UGGGGGCA UU|--CGUAC UCGACUG-UC -AGAG(GU-G AAA---)U-C U-UAGA-U-U 3061 UGUCG-AUG- A--GCACG-A CUGC(-GAAA )--GC|A--- UUUGCC-AA| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------ACG ---CUUCCAU -UAA-U|CA- A-GAACGAAA 3301 GUUAGGGGA- UCGAAGACG( AUCA------ ---------- ---------- ---------- 3361 ---------u GAUAC)CG-U -CGUAG|UCC UA--ACC-UU AAACGAUGCC GAC|UA|--- 3421 --gggau-ug gug-g-u--c g---(----u cacuc----) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- -------c-u c-cg-uca-g -c-accuu-- ---------- ----gaGA(- 3661 GAAA-)UCa- -AAGUC-uuu gGGU|-U|C- UGGGGGGAGU AU--GG-UC( --GCAA-)GU 3721 CUG-AAACUU -AAAG--GAA -UUG|AC-GG -AA-GGGCA- -CCAC-CAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --C-GU|-GG 4021 --CAGGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--GAA CCUCACCAGG UC[cag-aca 4081 gcgu-aagga uu-----gac agg(uugauu g-u)------ ccuuu----- cuu-gau--c 4141 ucuggg---- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UA-GU- GGU-G-CAUG |GCC|GU-UC UUA|GUUGG- U|GGA(-GUG 4261 A-)UUUGUC- -UGG(UU-AA UU)CCGUUA- AC-GAACGAG ACCUU-AA|- ---------- 4321 ---------- ---[CCU-GC UAUUUAGucc g--cggucu- ---------c cg-------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- ---------- ---uccgc-- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ----gcgca- CU-------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------U CAUAGAGG]- --|------- ---------- -ACU-CUG-C -G-G(----- 5041 -ccucaag)C UGCG-G-UGA GGUU-UAAGG CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UG A|U-CC|CUU 5221 A-G-A-UCUC CUGG-GCUGC A-CGCGCGCU ACACU--G-A UAGCU----- ---------- 5281 ---------- -----[gccu cgugu----- ---------- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- ---------- ---------- 5401 uuacccu-cg gcc(gaca-) ggcccu--gg uaac--ccc- --uagu]--- ---------- 5461 -------CUG CAU-C-G--- UGUU-A-GGG AUUGAUCUU( UGCAAUUC)U AGAUCAUG-A 5521 ACGAGG-AAU G--CCUAGUA UG-CGC-AAG (-UCAUCAG- )CUUGU-G-C -AGAUUA-G- 5581 U-CCCUGCCC UU|UGUA-CA CACCGC-CGU CGCUCC-U-A CC-CAU--CG AG-UGAUcc- 5641 ggu-gaau-- uau-ucgga- accu-gccu- gc-g-cg--- ---------- ---------- 5701 -------(uc gu----)--- ---------- ---------- ---------- ---c-gcc-- 5761 gcucgc-ggg -ccaa-|guu -uugugaacc uu-AUC-A-C UUAA-AGGAA GG-AGAA-G- 5821 UCGUAACAAG GA-------- -----n-n-n nnnnnn(nnn n)nnnnnnnn nnnnnnn--- 5881 --nnn~~~~~ ~~~~~~~~|| ||| // LOCUS B.bovis.2 5903 bp RNA RNA 11-JAN-191 DEFINITION Babesia bovis (BBOV2). ACCESSION No information KEYWORDS No information. SOURCE Babesia bovis (BBOV2). ORGANISM Babesia bovis (BBOV2). REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: L19077 LOCUS BBORR18S 1653 bp ss-rRNA RNA 03-JUN-1993 DEFINITION Babesia bovis (BBOV2) 18S ribosomal RNA. ACCESSION L19077 KEYWORDS 18S ribosomal RNA; ribosomal RNA small subunit. SOURCE Babesia bovis (individual_isolate S, strain vaccine) piroplasm rRNA. ORGANISM Babesia bovis Eukaryota; Animalia; Protozoa; Apicomplexa; Sporozoasida; Coccidiasina; Piroplasmida; Babesiidae. REFERENCE 1 (bases 1 to 1653) AUTHORS Allsopp,M.T., Cavalier-Smith,T., de Waal,T. and Allsopp,B.A. TITLE Phylogeny and evolution of the piroplasms JOURNAL Parasitology (1993) In press STANDARD full automatic FEATURES Location/Qualifiers rRNA 1..1653 /product="18S ribosomal RNA" /gene="18S rRNA" /label=srRNA-A /note="putative" source 1..1653 /organism="Babesia bovis" /isolate="S" /strain="vaccine" /dev_stage="piroplasm" /sequenced_mol="rRNA" BASE COUNT 377 a 387 c 444 g 444 t 1 others ORIGIN BASE COUNT 377 a 387 c 444 g 444 t 4251 others ORIGIN 1 |~~~~~~~~~ ~~~~~AACCU GGU(UGA)UC CU|GCCAGU- A-GUCA-UAU --GCUUGUCU 61 UAAA|-GACU AA-GCCAUGC A-UGUCU-AA GU|------- |--------- ----[----- 121 ---------- --------ac cagcuu---g ---------- -uuac-ggu- gaa]------ 181 -----|---A CU|G-CGAA- UGGCU-CAUU ACAA-cagu- uau-aguu-- ----ucuuug 241 gagu<----- ---------- ---------- ---------- ---------- ---ucacuuu 301 g>CUAUGG-A UAACCGCAC( -U-AAUU)GU GUGGC-UAA- UACACG---- ----(----) 361 ---------- -------(-- --)--|---- -- -auuccauuc -aa|guuucu ga|--CCC-A UCA--GCUU- --GACGGUA- 1141 GG(-GUAUUG G)CCU-CCCG A-|GGCAU-C GAC|GGGU-A A-CGGG|GAA -U-(UAGG-) 1201 GUU-CGAUU- CCG|GAGAGG G-nGCC(U-G CGAGAC)GGC UACC-ACAUC (UAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GC- AAAUU-ACCC -AAUCCU-G( ---aca--)C 1321 AGGG-A-GGU -|A|GUGACA AGAA-AU--- ---------- -(----)--- ---------- 1381 -----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AC CAAUACGGG- -GC--(---- ---uacu)-- GC-UC-UGUA A-UUGGCAU- 1501 ------GGGG ----GCGACC -UUCA--CCC U-----CG-C C-CGA-GUAC C---->CAUU 1561 GGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCCAA 1621 U-AGCGUA|U AUUAA--ACU UGUUG-CAG| UUA--AAAAG CUCGUAGUUG |--------- 1681 ---------- ---------- ---------- ---------- ---------- -|-------< 1741 aaucucacgu ---ccc--cc gcuu-ggu-c cuuu---ccu cgcc-----g gg--acgccu 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- --CGUUACUU UG-AGAA--A 2461 AUUAGAGUGU UU-CA-AG-C AGGUuu---- ---------- ---------- ---------- 2521 ---------- CGCC-U--GU AUAAUU-GAG CAUGGAA|UA -ACCUUG-UA -UGACcC-uG 2581 uc-------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- -gua|----- 2821 -cc-guuggu -u-------- --------gg CuuuGG-GUA A--UGGUUAA UA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGAA|CGGU ---------- 3001 --UGGGGGCA UU|--CGUAC UCGACUG-UC -AGAG(GU-G AAA---)UUC U-UAGA-U-U 3061 UGUCG-AUG- A-CGCACG-A CUGC(-GAAA )--GC|A--- UUUGCC-AA| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------ACG ---CUUCCAU -UAA-U|CA- A-GAACGAAA 3301 GUUAGGGGA- UCGAAGACG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CGUAG|UCC UA--ACC-UU AAACUAUGCC GAC|UA|--- 3421 --gggau-ug gug-g-u--c gucg(----- ccu------) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ----cgac-u c-cg-uca-g -c-accuu-- ---------- ----gaGA(- 3661 GAAA-)UCa- -AAGUC-uuu gGGU|-U|C- UGGGGGGAGU AU--GG-UC( --GCAA-)GU 3721 CUG-AAACUU -AAAG--GAA -UUG|AC-GG -AA-GGGCA- -CCAC-CAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --C-GU|-GG 4021 AGCCUGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--GAA CCUCACCAGG UC[cag-aca 4081 gcgu-aagga uu-----gac agg(uugauu g-u)------ ccuuu----- cuu-gauu-c 4141 ucuggg---- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UA-GU- GGU-G-CAUG |GCC|GU-UC UUA|GUUGG- U|GGA(-GUG 4261 A-)UUUGUC- -UGG(UU-AA UU)CCGUUA- AC-GGACGAG ACCUU-AA|- ---------- 4321 ---------- ---[CCU-GC UAUUUAGucg c--u-cgg-- -------ucu cugu------ 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- ---------- ----ccgu-- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ----gcgca- CU-------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------U CAUAGAGG]- --|------- ---------- GACU-CUG-C -G-G(----- 5041 -cgucaag)C UGCG-G-UGA GGUU-UAAGG CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UG A|UGCC|CUU 5221 A-G-A-UGUC CUGG-GCUGC A-CGCGCGCU ACACU--G-A UGCUU----- ---------- 5281 ---------- -----[gccu cgugu----- ---------- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- ---------- ---------- 5401 uuacccu-cg gcc(gaua-) ggcccu--gg -uaac-ccc- --uagu]--- ---------- 5461 -------CUG CAU-C-G--- UGUU-U-GGG AUUGAUCUU( UGCAAUUC)U AGAUCAUG-A 5521 ACGAGG-AAU G--CCUAGUA UG-CGC-AAG (-UCAUCAG- )CUUGU-G-C -AGAUUACG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUCC-U-A CC-GAU--CG AG-UGAUcc- 5641 ggu-gaau-- uau-ucgga- accu-gcuu- gc-g-cga-- ---------- ---------- 5701 -------(uc cg----)--- ---------- ---------- ---------- --uc-gcc-- 5761 gcucgc-ggg -ccaa-|guu -uugugaacc uu-AUC-A-C UUAA-AGGAA GG-AGAA-G- 5821 UCGUAACAAG GU-------- -----U-U-C CGUAGG(UGA A)CCUGCAGA AGGAUC~~~~ 5881 ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS B.bovis.3 5903 bp RNA RNA 11-JAN-191 DEFINITION Babesia bovis (BBOV3). ACCESSION No information KEYWORDS No information. SOURCE Babesia bovis (BBOV3). ORGANISM Babesia bovis (BBOV3). REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: L19078 LOCUS BBORR18SA 1651 bp ss-rRNA RNA 03-JUN-1993 DEFINITION Babesia bovis (BBOV3) 18S ribosoma RNA. ACCESSION L19078 KEYWORDS 18S ribosomal RNA; ribosomal RNA small subunit. SOURCE Babesia bovis (individual_isolate S, strain vaccine) piroplasm rRNA. ORGANISM Babesia bovis Eukaryota; Animalia; Protozoa; Apicomplexa; Sporozoasida; Coccidiasina; Piroplasmida; Babesiidae. REFERENCE 1 (bases 1 to 1651) AUTHORS Allsopp,M.T., Cavalier-Smith,T., de Waal,T. and Allsopp,B.A. TITLE Phylogeny and evolution of the piroplasms JOURNAL Parasitology (1993) In press STANDARD full automatic FEATURES Location/Qualifiers rRNA 1..1651 /product="18S ribosomal RNA" /gene="18S rRNA" /label=srRNA-B /note="putative" source 1..1651 /organism="Babesia bovis" /isolate="S" /strain="vaccine" /dev_stage="piroplasm" /sequenced_mol="rRNA" BASE COUNT 381 a 385 c 442 g 442 t 1 others ORIGIN BASE COUNT 381 a 385 c 442 g 442 t 4253 others ORIGIN 1 |~~~~~~~~~ ~~~~~AACCU GGU(UGA)UC CU|GCCAGU- A-GUCA-UAU --GCUUGUCU 61 UAAA|-GACU AA-GCCAUGC A-UGUCU-AA GU|------- |--------- ----[----- 121 ---------- --------ac cagcuu---g ---------- -uuac-ggu- gaa]------ 181 -----|---A CU|G-CGAA- UGGCU-CAUU ACAA-cagu- uau-aguu-- ----ucuuug 241 gagu<----- ---------- ---------- ---------- ---------- ---ucacuuu 301 g>CUAUGG-A UAACCGCGC( -U-AAUU)GU GUGGC-UAA- UACACG---- ----(----) 361 ---------- -------(-- --)--|---- -- -auuccauuc -aa|guuucu ga|--CCC-A UCA--GCUU- --GACGGUA- 1141 GG(-GUAUUG G)CCU-CCCG A-|GGCAU-C GAC|GGGU-A A-CGGG|GAA -U-(UAGG-) 1201 GUU-CGAUU- CCG|GAGAGG G-AGCC(U-G CGAGAC)GGC UACC-ACAUC (UAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GC- AAAUU-ACCC -AAUCCU-G( ---aca--)C 1321 AGGG-A-GGU -|A|GUGACA AGAA-AU--- ---------- -(----)--- ---------- 1381 -----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AC CAAUACGGG- -GC--(---- ---uacu)-- GC-UC-UGUA A-UUGGCAU- 1501 ------GGGG ----GCGACC -UUCA--CCC U-----CG-C C-CGA-GUAC C---->CAUU 1561 GGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCCAA 1621 U-AGCGUA|U AUUAA--ACU UGUUG-CAG| UUA--AAAAG CUCGUAGUUG |--------- 1681 ---------- ---------- ---------- ---------- ---------- -|-------< 1741 aaucucacgu ---ccgc-cc ua---gug-u uuuc---cac uac-----gc gg--acgccu 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- --CGUUACUU UG-AGAA--A 2461 AUUAGAGUGU UU-CA-AG-C AGGUuu---- ---------- ---------- ---------- 2521 ---------- CGCC-U--GU AUAAUU-GAG CAUGGAA|UA -ACCUnG-UA -UGACcC-uG 2581 uc-------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- -gua|----- 2821 -cc-guuggu -u-------- --------gg CuuuGG-GUA A--UGGUUAA UA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGAA|CGGU ---------- 3001 --UGGGGGCA UU|--CGUAC UCGACUG-UC -AGAG(GU-G AAA---)UUC U-UAGA-U-U 3061 UGUCG-AUG- A-CGCACG-A CUGC(-GAAA )--GC|A--- UUUGCC-AA| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------ACG ---CUUCCAU -UAA-U|CA- A-GAACGAAA 3301 GUUAGGGGA- UCGAAGACG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CGUAG|UCC UA--ACC-UU AAACUAUGCC GAC|UA|--- 3421 --gggau-ug gug-g-u--c gucg(----- ccu------) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ----cgac-u c-cg-uca-g -c-accuu-- ---------- ----gaGA(- 3661 GAAA-)UCa- -AAGUC-uuu gGGU|-U|C- UGGGGGGAGU AU--GG-UC( --GCAA-)GU 3721 CUG-AAACUU -AAAG--GAA -UUG|AC-GG -AA-GGGCA- -CCAC-CAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --C-GU|-GG 4021 AGCCUGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--GAA CCUCACCAGG UC[cag-aca 4081 gcgu-aagga uu-----gac agg(uugauu g-u)------ ccuuu----- cuu-gauu-c 4141 ucuggg---- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UA-GU- GGU-G-CAUG |GCC|GU-UC UUA|GUUGG- U|GGA(-GUG 4261 A-)UUUGUC- -UGG(UU-AA UU)CCGUUA- AC-GAACGAG ACCUU-AA|- ---------- 4321 ---------- ---[CCU-GC UAUUUAGucg c--u-cgg-- -------ucu cugu------ 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- ---------- ----ccgu-- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ----gcgca- CU-------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------U CAUAGAGG]- --|------- ---------- GACU-CUG-C -G-G(----- 5041 -cgucaag)C UGCG-G-UGA GGUU-UAAGG CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UG A|UGCC|CUU 5221 A-G-A-UGUC CUGG-GCUGC A-CGCGCGCU ACACU--G-A UGCUU----- ---------- 5281 ---------- -----[gccu cgugu----- ---------- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- ---------- ---------- 5401 uuacccu-cg gcc(gaua-) -gcccu--gg uaac--ccc- --uagu]--- ---------- 5461 -------CUG CAU-C-G--- UGUU-U-GGG AUUGAUCUU( UGCAAUUC)U AGAUCAUG-A 5521 ACGAGG-AAU G--CCUAGUA UG-CGC-AAG (-UCAUCAG- )CUUGU-G-C -AGAUUACG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUCC-U-A CC-GAU--CG AG-UGAUcc- 5641 ggu-gaau-- uau-ucgga- accu-gccu- gc-g-cga-- ---------- ---------- 5701 -------(uc cg----)--- ---------- ---------- ---------- --uc-gcc-- 5761 gcucgc-ggg -ccaa-|guu -uugugaacc uu-AUC-A-C UUAA-AGGAA GG-AGAA-G- 5821 UCGUAACAAG GU-------- -----U-U-C CGUAGG(UGA A)CCUGCAGA AGGAUC~~~~ 5881 ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS B.caballi 5903 bp RNA RNA 11-JAN-191 DEFINITION Babesia caballi. ACCESSION No information KEYWORDS No information. SOURCE Babesia caballi. ORGANISM Babesia caballi. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: Z15104 ID BC18SRRN standard; DNA; INV; 1694 BP. XX AC Z15104; XX DT 14-SEP-1992 (Rel. 33, Created) #- DT 14-SEP-1992 (Rel. 33, Last updated, Version 1) XX DE B.caballi gene for 18S ribosomal RNA. XX KW 18S ribosomal RNA; ribosomal RNA. XX OS Babesia caballi OC Eukaryota; Animalia; Protozoa; Microspora; Microsporea; OC Piroplasmia; Piroplasmida; Babesiidae. XX RN [1] RP 1-1694 RA Allsopp M.T., Cavalier-Smith T., de Waal T., Allsopp B.A.; RT "Origin of Theileria from Nicollia and a split from Babesia very RT early in piroplasm evolution."; RL Unpublished. XX RN [2] RP 1-1694 RA Allsopp B.A.; RT ; RL Submitted (14-SEP-1992) on tape to the EMBL Data Library by: RL Allsopp B. A., Onderstepoort Veterinary Institute, Molecular RL Biology, Onderstepoort, South Africa, 0110 XX CC *source: stage=Piroplasm; CC *source: tissue=Host blood (equine); CC *source: isolate=Kaalplaas; XX FH Key Location/Qualifiers FH FT rRNA 1..1694 FT /product= "18S ribosomal RNA" /citation= ([1]) XX SQ Sequence 1694 BP; 421 A; 329 C; 432 G; 512 T; 0 other; BASE COUNT 421 a 329 c 432 g 512 t 4209 others ORIGIN 1 |~~~~~~~~~ ~~~~~AACCU GGU(UGA)UC CU|GCCAGU- A-GUCA-UAU --GCUUGUCU 61 UAAA|-GAUU AA-GCCAUGC A-UGUCU-AA GU|------- |--------- ----[----- 121 ---------- --------ac aagcuu---u ---------- -uuac-ggu- gaa]------ 181 -----|---A CU|G-CGAA- UGGCU-CAUU ACAA-cagu- uau-aguu-- ----ucuuug 241 guau<----- ---------- ---------- ---------- ---------- ----ucguuu 301 u>CUAUGG-A UAACCGUGC( -U-AAUU)GU AGGGC-UAA- UACAAG---- ----(----) 361 ---------- -------(-- --)--|---- -- -ggcccauuc -aa|guuucu ga|--CCC-A UCA--GCUU- --GACGGUA- 1141 GG(-GUAUUG G)CCU-ACCG A-|GGCAG-C AAC|GGGU-A A-CGGG|GAA -U-(UAGG-) 1201 GUU-CGAUU- CCG|GAGAGG G-AGCC(U-G AGAAAC)GGC UACC-ACAUC (UAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GC- AAAUU-ACCC -AAUCCU-G( ---aca--)C 1321 AGGG-A-GGU -|A|GUGACA AGAA-AU--- ---------- -(----)--- ---------- 1381 -----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AA CAAUACAGG- -GC--(---- ---uaau)-- GU-CU-UGUA A-UUGGAAU- 1501 ------GAUG ----GCGACU -UAAA--CCC U-----CG-C C-AGA-GUAA C---->AAUU 1561 GGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCCAA 1621 U-AGCGUA|U AUUAA--ACU UGUUG-CAG| UUA--AAAAG CUCGUAGUUG |--------- 1681 ---------- ---------- ---------- ---------- ---------- -|-------< 1741 aauuucugcg u-ugcgu-ug uucu-ugc-u uuuu---gcu ugauuu--uc gcuucgcuuu 1801 uu-gu----- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- --UUUUACUU UG-AGAA--A 2461 AUUAGAGUGU UU-AU-CG-C AGACuuuu-- ---------- ---------- ---------- 2521 ---------- GUCU-U--GA AUACUU-CAG CAUGGAA|UA -ACAUAG-UA -GGACcuuGG 2581 uu-------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- -cua|--uuu 2821 --u-guuggu -uu-gg---- --------ga CCu-uG-GUA A--UGGUUAA UA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGAA|CGGU ---------- 3001 --UGGGGGCA UU|--CGUAU UUAACUG-UC -AGAG(GU-G AAA---)UUC U-UAGA-U-U 3061 UGUUA-AAG- A-CGAACU-A CUGC(-GAAA )--cg|A--- UUUGCC-AA| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------ACG ---UUUUCAU -UAA-U|CA- A-GAACGAAA 3301 GUUAGGGGA- UCGAAGACG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CGUAG|UCC UA--ACC-AU AAACUAUGCC GAC|UA|--- 3421 --gggau-ug gag-g-u--c guc-(----a uuuuucu--) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- -----gac-u c-cu-uca-g -c-accuu-- ---------- ----gaGA(- 3661 GAAA-)UCa- -AAGUC-uuu gGGU|-U|C- UGGGGGGAGU AU--GG-UC( --GCAA-)GU 3721 CUG-AAACUU -AAAG--GAA -UUG|AC-GG -AA-GGGCA- -CCAC-CAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --C-GU|-GG 4021 AGCCUGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--GAA ACUCACCAGG UC[cag-aca 4081 gagg-uagga uu-----gac aga(uugaua g-c)------ ucuuu----- cuu-gauu-c 4141 uuuggg---- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU-G-CAUG |GCC|GU-UC UUA|GUUGG- U|GGA(-GUG 4261 A-)UUUGUC- -UGG(UU-AA UU)CCGUUA- AC-GAACGAG ACCUU-AA|- ---------- 4321 ---------- ---[CCU-GC UAACUAGcuu c--ccuuuu- ---------u uu-------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- ---------- guuuggg--- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- -----uuug- CU-------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------U CUUAGAGG]- --|------- ---------- GACU-UUA-C -A-G(----- 5041 -cgacaag)C UGUA-G-GGA AGUU-UAAGG CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UG A|UGCC|CUU 5221 A-G-A-UGUC CUGG-GCUGC A-CGCGCGCU ACACU--G-A UGCAU----- ---------- 5281 ---------- -----[ucac uaagu----- ---------- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- ---------- ---------- 5401 uuuuccu-gc ucc(gaaa-) ggug-u--gg guaau-cug- --uagu]--- ---------- 5461 -------AUG CAU-C-G--- UGUC-G-GGG AUUGAUUUU( UGCAAUUC)U AAAUCAUG-A 5521 ACGAGG-AAU G--CCUAGUA UG-CGC-AAG (-UCAUCAG- )CUUGU-G-C -AGAUUACG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUCC-U-A CC-GAU--CG AG-UGAUcc- 5641 ggu-gaau-- uau-ucgga- ccgu-ggcu- uuuc-cga-- ---------- ---------- 5701 -------(uu cg----)--- ---------- ---------- ---------- --uc-ggu-- 5761 uuugcc-uug -ggaa-|guu -uugugaacc uu-AUC-A-C UUAA-AGGAA GG-AGAA-G- 5821 UCGUAACAAG GU-------- -----U-U-C CGUAGG(UGA A)CCUGCAGA AGGAUC~~~~ 5881 ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS B.canis 5903 bp RNA RNA 11-JAN-191 DEFINITION Babesia canis. ACCESSION No information KEYWORDS No information. SOURCE Babesia canis. ORGANISM Babesia canis. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: L19079 LOCUS BBORR18SC 1711 bp ss-rRNA RNA 03-JUN-1993 DEFINITION Babesia canis 18S ribosomal RNA. ACCESSION L19079 KEYWORDS 18S ribosomal RNA; ribosomal RNA small subunit. SOURCE Babesia canis piroplasm rRNA. ORGANISM Babesia canis Eukaryota; Animalia; Protozoa; Apicomplexa; Sporozoasida; Coccidiasina; Piroplasmida; Babesiidae. REFERENCE 1 (bases 1 to 1711) AUTHORS Allsopp,M.T., Cavalier-Smith,T., de Waal,T. and Allsopp,B.A. TITLE Phylogeny and evolution of the piroplasms JOURNAL Parasitology (1993) In press STANDARD full automatic FEATURES Location/Qualifiers rRNA 1..1711 /product="18S ribosomal RNA" /gene="18S rRNA" /note="putative" source 1..1711 /organism="Babesia canis" /dev_stage="piroplasm" /sequenced_mol="rRNA" BASE COUNT 423 a 334 c 455 g 498 t 1 others ORIGIN BASE COUNT 423 a 334 c 455 g 498 t 4193 others ORIGIN 1 |~~~~~~~~~ ~~~~~AACCU GGU(UGA)UC CU|GCCAGU- A-GUCA-UAU --GCUUGUCU 61 CAAA|-GAUU AA-GCCAUGC A-UGUCU-AA GU|------- |--------- ----[----- 121 ---------- --------ac aagcuu---u ---------- -uuac-ggu- gaa]------ 181 -----|---A CU|G-CGAA- UGGCU-CAUU AAAA-cagu- uau-aguu-- ----uauuug 241 guau<----- ---------- ---------- ---------- ---------- ----ucuuuu 301 u>CCAUGG-A UAACCGUGC( -U-AAUU)GU AGGGC-UAA- UACACG---- ----(----) 361 ---------- -------(-- --)--|---- -- -ggaccauuc -aa|guuucu ga|--CCC-A UCA--GCUU- --GACGGUA- 1141 GG(-GUAUUG G)CCU-ACCG A-|GGCAG-C AAC|GGGU-A A-CGGG|GAA -U-(UAGG-) 1201 GUU-CGAUU- CCG|GAGAGG G-AGCC(U-G AGAGAC)GGC UACC-ACAUC (UAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GC- AAAUU-ACCC -AAUCCC-G( ---aca--)C 1321 GGGG-A-GGU -|A|GUGACA AGAA-AU--- ---------- -(----)--- ---------- 1381 -----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AA CAAUACAGG- -GC--(---- ---uaau)-- GU-CU-UGUA A-UUGGAAU- 1501 ------GAUG ----GUGACU -UAAA--CCC U-----CA-C C-AGA-GUAG C---->AAUU 1561 GGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCCAA 1621 U-AGCGUA|U AUUAA--ACU UGUUG-CAG| UUA--AAAAG CUCGUAGUUG |--------- 1681 ---------- ---------- ---------- ---------- ---------- -|-------< 1741 uauuuuugcu u--ggcgguu uguu-gcc-u uugu---ggc uugauu-ccg cu-uggcuuu 1801 ug-gc---uu uu-ugcc-u- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- --UAUUACUU UG-AGAA--A 2461 AUUAGAGUGU UU-CA-AG-C AGACuuuu-- ---------- ---------- ---------- 2521 ---------- GUCU-U--GA AUACUG-UAG CAUGGAA|UA -AUAGAG-UA -GGACuUuGG 2581 uu-------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- -cua|--uuu 2821 --u-guuggu -uu-ggg--- --------aa CCuuGG-GUA A--UGGUUAn UA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGAA|CGGU ---------- 3001 --UGGGGGCA UU|--CGUAU UUAACUG-UC -AGAG(GU-G AAA---)UUC U-UAGA-U-U 3061 UGUUA-AAG- A-CGAACU-A CUGC(-GAAA )--GC|A--- UUUGCC-AA| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------ACG ---UUUCCAU -UAA-U|CA- A-GAACGAAA 3301 GUUAGGGGA- UCGAAGACG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CGUAG|UCC UA--ACC-AU AAACUAUGCC GAC|UA|--- 3421 --gugau-ug gag-g-u--c gucg(----- uuuguu---) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ----ugac-c c-cu-uca-g -g-agcuu-- ---------- ----gaGA(- 3661 GAAA-)UCa- -AAGUC-uuu gGGU|-U|C- UGGGGGGAGU AU--GG-UC( --GCAA-)GG 3721 CUG-AAACUU -AAAG--GAA -UUG|AC-GG -AA-GGGCA- -CCAC-CAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --C-GU|-GG 4021 AGCCUGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--GAA ACUCACCAGG UC[cag-aca 4081 aacgguagga uu-----gac aga(uugaua g-c)------ ucuuu----- cuu-gauu-c 4141 uuuggg---- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU-G-CAUG |GCC|GU-UC UUA|GUUGG- U|GGA(-GUG 4261 A-)UUUGUC- -UGG(UU-AA UU)CCGUUA- AC-GAACGAG ACCUU-AA|- ---------- 4321 ---------- ---[CCU-GC UAACUAGcgc u--ggu-uac ---------u ug-------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- ---------- --guuucc-- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ----cgcug- CU-------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------U CUUAGAGG]- --|------- ---------- GACU-UUG-G -G-G(----- 5041 -cuugaag)C UCCA-A-GGA AGAU-UAAGG CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UG A|UGCC|CUU 5221 A-G-A-UGUC CUGG-GCUGC A-CGCGCGCU ACACU--G-A UGCAU----- ---------- 5281 ---------- -----[ucau cgagu----- ---------- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- ---------- ---------g 5401 uugcccc-ug gcc(gaga-) gguc-u--gg guaau-cuu- --uagu]--- ---------- 5461 -------AUG CAU-C-G--- UGAC-G-GGG AUUGAUUUU( UGUAAUUC)U AAAUCAUG-A 5521 ACGAGG-AAU G--CCUAGUA UG-CGC-AAG (-UCAUCAG- )CUUGU-G-C -AGAUUACG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUCC-U-A CC-GAU--CG AG-UGAUcc- 5641 ggu-gaau-- uau-ucgga- ccgu-ggcu- auuc-cga-- ---------- ---------- 5701 -------(uu cg----)--- ---------- ---------- ---------- --uc-ggu-- 5761 uuugcc-gug -gaaa-|guu -uugugaacc uu-AUC-A-C UUAA-AGGAA GG-AGAA-G- 5821 UCGUAACAAG GU-------- -----U-U-C CGUAGG(UGA A)CCUGCAGA AGGAUC~~~~ 5881 ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS B.diverg.1 5903 bp RNA RNA 11-JAN-191 DEFINITION Babesia divergens. ACCESSION No information KEYWORDS No information. SOURCE Babesia divergens. ORGANISM Babesia divergens. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: U16370 LOCUS BDU16370 1724 bp ds-DNA INV 15-NOV-1994 DEFINITION Babesia divergens 18S rRNA gene, complete sequence. ACCESSION U16370 KEYWORDS . SOURCE Babesia divergens. ORGANISM Babesia divergens Eukaryotae; Hyperchondria; Eukaryote crown group; Alveolates; Apicomplexans; Piroplasmids; Babesiidae; Babesia. REFERENCE 1 (bases 1 to 1724) AUTHORS Holman,P.J. TITLE Comparative Study of Cervid Babesia Isolates JOURNAL Thesis (1994) Veterinary Pathobiology, Texas A&M University STANDARD full automatic REFERENCE 2 (bases 1 to 1724) AUTHORS Holman,P.J. TITLE Direct Submission JOURNAL Submitted (27-OCT-1994) Patricia Holman, Texas A&M University, Veterinary Pathobiology, College Station, TX 77843, USA STANDARD full automatic COMMENT NCBI gi: 571462 FEATURES Location/Qualifiers source 1..1724 /lab_host="Meriones unquiculatus" /organism="Babesia divergens" /specific_host="Bos taurus" /dev_stage="piroplasm" rRNA 1..1724 /product="18S rRNA" BASE COUNT 446 a 341 c 437 g 500 t ORIGIN BASE COUNT 446 a 341 c 437 g 500 t 4179 others ORIGIN 1 |~~~~~~~~~ ~~~~~AACCU GGU(UGA)UC CU|GCCAGU- A-GUCA-UAU --GCUUGUCU 61 UAAA|-GAUU AA-GCCAUGC A-UGUCU-AA GU|------- |--------- ----[----- 121 ---------- --------ac aaacuu---u ---------- -uuac-ggu- gaa]------ 181 -----|---A CU|G-CGAA- UGGCU-CAUU ACAA-cagu- uau-aguu-- ----ucuuug 241 guau<----- ---------- ---------- ---------- ---------- ----ucguuu 301 u>CCAUGG-A UAACCGUGC( -U-AAUU)GU AGGGC-UAA- UACAAG---- ----(----) 361 ---------- -------(-- --)--|---- -- -ggaccauuc -aa|guuucu ga|--CCC-A UCA--GCUU- --GACGGUA- 1141 GG(-GUAUUG G)CCU-ACCG A-|GGCAG-C AAC|GGGU-A A-CGGG|GAA -U-(UAGG-) 1201 GUU-CGAUU- CCG|GAGAGG G-AGCC(U-G AGAAAC)GGC UACC-ACAUC (CAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GC- AAAUU-ACCC -AAUCCU-G( ---aca--)C 1321 AGGG-A-GGU -|A|GUGACA AGAA-AU--- ---------- -(----)--- ---------- 1381 -----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AA CAAUACAGG- -GC--(---- ---aauu)-- GU-CU-UGUA A-UUGGAAU- 1501 ------GAUG ----GUGACC -UAAA--CCC U-----CA-C C-AGA-GUAA C---->AAUU 1561 GGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCCAA 1621 U-AGCGUA|U AUUAA--ACU UGUUG-CAG| UUA--AAAAG CUCGUAGUUG |--------- 1681 ---------- ---------- ---------- ---------- ---------- -|-------< 1741 aauuuuugcg u--gguguua auauugac-u aau----guc gagauu-gca cu-ucgcuuu 1801 ug-gg---au uu-aucc-cu ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- --UUUUACUU UG-AGAA--A 2461 AUUAGAGUGU UU-CA-AG-C AGACuuuu-- ---------- ---------- ---------- 2521 ---------- GUCU-U--GA AUACUU-CAG CAUGGAA|UA -AUAGAG-UA -GGACuuuGG 2581 uu-------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- -cua|--uuu 2821 --u-guuggu -uu-gug--- --------aa CCu-uA-GUA A--UGGUUAA UA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGAA|CGGU ---------- 3001 --UGGGGGCA UU|--CGUAU UUAACUG-UC -AGAG(GU-G AAA---)UUC U-UAGA-U-U 3061 UGUUA-AAG- A-CGAACU-A CUGC(-GAAA )--GC|A--- UUUGCC-AA| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------ACG ---UUUUCAU -UAA-U|CA- A-GAACGAAA 3301 GUUAGGGGA- UCGAAGACG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CGUAG|UCC UA--ACC-AU AAACUAUGCC GAC|UA|--- 3421 --gggau-ug gag-g-u--c guc-(---au uuuucc---) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- -----gac-u c-cu-uca-g -c-accuu-- ---------- ----gaGA(- 3661 GAAA-)UCa- -AAGUC-uuu gGGU|-U|C- UGGGGGGAGU AU--GG-UC( --GCAA-)GG 3721 CUG-AAACUU -AAAG--GAA -UUG|AC-GG -AA-GGGCA- -CCAC-CAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --C-GU|-GG 4021 AGCCUGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--GAA ACUCACCAGG UC[cag-aca 4081 augu-uagga uu-----gac aga(uugaua g-c)------ ucuuu----- cuu-gauu-c 4141 uuuggg---- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU-G-CAUG |GCC|GU-UC UUA|GUUGG- U|GGA(-GUG 4261 A-)UUUGUC- -UGG(UU-AA UU)CCGUUA- AC-GAACGAG ACCUU-AA|- ---------- 4321 ---------- ---[CCU-GC UAACUag-u- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- ---------- gucc--g--- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- -----uaaaa agguucgucc guuacgguuu 4801 gcu------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------U CUUAGAGG]- --|------- ---------- GACU-UUG-C -G-G(----- 5041 -cucuaag)C CGCA-A-GGA AGUU-UAAGG CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UG A|UGCC|CUU 5221 A-G-A-UGUC CUGG-GCUGC A-CGCGCGCU ACACU--G-A UGCAU----- ---------- 5281 ---------- -----[ucau cgagu----- ---------- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- ---------- ---------u 5401 uuauccc-uu ccc(gaaa-) gggc-u--gg guaau-cuu- --uagu]--- ---------- 5461 -------AUG CAU-C-G--- UGAC-G-GGG AUUGAUUUU( UGCAAUUC)U AAAUCAUG-A 5521 ACGAGG-AAU G--CCUAGUA UG-CGC-AAG (-UCAUCAG- )CUUGU-G-C -AGAUUACG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUCC-U-A CC-GAU--CG AG-UGAUcc- 5641 ggu-gaau-- uau-ucgga- ccgu-ggcc- uuuc-cga-- ---------- ---------- 5701 -------(uu cg----)--- ---------- ---------- ---------- --uc-ggc-- 5761 uuggcc-uag -ggaa-|guc -uugugaacc uu-AUC-A-C UUAA-AGGAA GG-AGAA-G- 5821 UCGUAACAAG GU-------- -----U-U-C CGUAGG(UGA A)CCUGCAGA AGGAUC~~~~ 5881 ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS B.diverg.2 5903 bp RNA RNA 11-JAN-191 DEFINITION Babesia divergens. ACCESSION No information KEYWORDS No information. SOURCE Babesia divergens. ORGANISM Babesia divergens. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: U07885 LOCUS U07885 1671 bp DNA INV 07-DEC-1994 DEFINITION Babesia divergens small subunit rRNA gene. ACCESSION U07885 KEYWORDS . SOURCE Babesia divergens. ORGANISM Babesia divergens Eucaryotae; Protozoa; Apicomplexa; Sporozoa; Coccidia; Piroplasmida. REFERENCE 1 (bases 1 to 1671) AUTHORS Mackenstedt,U., Luton,K., Baverstock,P. and Johnson,A. TITLE Phylogenetic relationships of Babesia species as determined from comparison of small subunit ribosomal RNA gene sequences JOURNAL Unpublished STANDARD full automatic REFERENCE 2 (bases 1 to 1671) AUTHORS Luton,K. TITLE Direct Submission JOURNAL Submitted (22-MAR-1994) Kim Luton, Microbiology, University of Technology, Sydney, Westbourne St, Gore Hill, Sydney, N.S.W., 2065, Australia STANDARD full automatic COMMENT NCBI gi: 595285 FEATURES Location/Qualifiers source 1..1671 /lab_host="Meriones unguiculatus" /organism="Babesia divergens" /specific_host="Bos taurus" /dev_stage="merozoites" rRNA 1..1671 /product="small subunit rRNA" BASE COUNT 434 a 327 c 420 g 490 t ORIGIN BASE COUNT 434 a 327 c 420 g 490 t 4232 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~(~~~)~~ ~~|~~~~~~~ ~~~UUA-UAU --GCUUGUCU 61 UAAA|-GAUU AA-GCCAUGC A-UGUCU-AA GU|------- |--------- ----[----- 121 ---------- --------ac aaacuu---u ---------- -uuac-ggu- gaa]------ 181 -----|---A CU|G-CGAA- UGGCU-CAUU ACAA-cagu- uau-aguu-- ----ucuuug 241 guau<----- ---------- ---------- ---------- ---------- ----ucguuu 301 u>CCAUGG-A UAACCGUGC( -U-AAUU)GU AGGGC-UAA- UACAAG---- ----(----) 361 ---------- -------(-- --)--|---- -- -ggaccauuc -aa|guuucu ga|--CCC-A UCA--GCUU- --GACGGUA- 1141 GG(-GUAUUG G)CCU-ACCG A-|GGCAG-C AAC|GGGU-A A-CGGG|GAA -U-(UAGG-) 1201 GUU-CGAUU- CCG|GAGAGG G-AGCC(U-G AGAAAC)GGC UACC-ACAUC (CAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GC- AAAUU-ACCC -AAUCCU-G( ---aca--)C 1321 AGGG-A-GGU -|A|GUGACA AGAA-AU--- ---------- -(----)--- ---------- 1381 -----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AA CAAUACAGG- -GC--(---- ---aauu)-- GU-CU-UGUA A-UUGGAAU- 1501 ------GAUG ----GUGACC -UAAA--CCC U-----CA-C C-AGA-GUAA C---->AAUU 1561 GGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCCAA 1621 U-AGCGUA|U AUUAA--ACU UGUUG-CAG| UUA--AAAAG CUCGUAGUUG |--------- 1681 ---------- ---------- ---------- ---------- ---------- -|-------< 1741 aauuuuugcg u--gguguua auauugac-u aau----guc gagauu-gca cu-ucgcuuu 1801 ug-gg---au uu-aucc-cu ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- --UUUUACUU UG-AGAA--A 2461 AUUAGAGUGU UU-CA-AG-C AGACuuuu-- ---------- ---------- ---------- 2521 ---------- GUCU-U--GA AUACUU-CAG CAUGGAA|UA -AUAGAG-UA -GGACuuuGG 2581 uu-------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- -cua|--uuu 2821 --u-guuggu -uu-gug--- --------aa CCu-uA-GUA A--UGGUUAA UA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGAA|CGGU ---------- 3001 --UGGGGGCA UU|--CGUAU UUAACUG-UC -AGAG(GU-G AAA---)UUC U-UAGA-U-U 3061 UGUUA-AAG- A-CGAACU-A CUGC(-GAAA )--GC|A--- UUUGCC-AA| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------ACG ---UUUUCAU -UAA-U|CA- A-GAACGAAA 3301 GUUAGGGGA- UCGAAGACG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CGUAG|UCC UA--ACC-AU AAACUAUGCC GAC|UA|--- 3421 --gggau-ug gag-g-u--c guc-(---au uuuucc---) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- -----gac-u c-cu-uca-g -c-accuu-- ---------- ----gaGA(- 3661 GAAA-)UCa- -AAGUC-uuu gGGU|-U|C- UGGGGGGAGU AU--GG-UC( --GCAA-)GG 3721 CUG-AAACUU -AAAG--GAA -UUG|AC-GG -AA-GGGCA- -CCAC-CAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --C-GU|-GG 4021 caug-GCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--GAA ACUCACCAGG UC[cag-aca 4081 augu-uagga uu-----gac aga(uugaua g-c)------ ucuuu----- cuu-gauu-c 4141 uuuggg---- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU-G-CAUG |GCC|GU-UC UUA|GUUGG- U|GGA(-GUG 4261 A-)UUUGUC- -UGG(UU-AA UU)CCGUUA- AC-GAACGAG ACCUU-AA|- ---------- 4321 ---------- ---[CCU-GC UAACUag-u- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- ---------- gucc--g--- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- -----uaaaa agguucgucc guuacgguuu 4801 gcu------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------U CUUAGAGG]- --|------- ---------- GACU-UUG-C -G-G(----- 5041 -cucuaag)C CGCA-A-GGA AGUU-UAAGG CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UG A|UGCC|CUU 5221 A-G-A-UGUC CUGG-GCUGC A-CGCGCGCU ACACU--G-A UGCAU----- ---------- 5281 ---------- -----[ucau cgagu----- ---------- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- ---------- ---------u 5401 uuauccc-uu ccc(gaaa-) --gc-u--gg guaau-cuu- --uagu]--- ---------- 5461 -------AUG CAU-C-G--- UGACuG-GGG AUUGAUUUU( UGCAAUUC)U AAAUCAUG-A 5521 ACGAGG-AAU G--CCUAGUA UG-CGC-AAG (-UCAUCAG- )CUUGU-G-C -AGAUUACG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUCC-U-A CC-GAU--CG AG-UGAUcc- 5641 ggu-gaau-- uau-ucgga- ccgu-ggcc- uuuc-cga-- ---------- ---------- 5701 -------(uu cg----)--- ---------- ---------- ---------- --uc-ggc-- 5761 uuggcc-uag -ggaa-|guc -uugugaacc uu-AUC-A-C UUAA-AGGAA GG-AGAA-G- 5821 UCGUAACAAG -U~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5881 ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS B.diverg.3 5903 bp RNA RNA 11-JAN-191 DEFINITION Babesia divergens. ACCESSION No information KEYWORDS No information. SOURCE Babesia divergens. ORGANISM Babesia divergens. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: Z48751 LOCUS BDRRNA18S 1726 bp DNA INV 21-MAR-1995 DEFINITION B.divergens gene for 18S ribosomal RNA. ACCESSION Z48751 KEYWORDS 18S ribosomal RNA; 18S rRNA gene. SOURCE Babesia divergens. ORGANISM Babesia divergens Eukaryota; Animalia; Protozoa; Microspora; Microsporea; Piroplasmia; Piroplasmida; Babesiidae. REFERENCE 1 (bases 1 to 1726) AUTHORS Skuce,P.J., Mallon,T.R. and Taylor,S.M. TITLE Babesia divergens 18S rRNA, complete sequence JOURNAL Unpublished REFERENCE 2 (bases 1 to 1726) AUTHORS Skuce,P.J. TITLE Direct Submission JOURNAL Submitted (21-MAR-1995) to the EMBL/GenBank/DDBJ databases. Skuce P. J., Department of Agriculture for Northern Ireland, Veterinary Sciences Division, Stoney Road, Stormont, Belfast, Northern Ireland, UK, BT4 3SD COMMENT NCBI gi: 732566 FEATURES Location/Qualifiers source 1..1726 /organism="Babesia divergens" /strain="Drumaness" rRNA 1..1726 /gene="18S rRNA" /product="18S ribosomal RNA" BASE COUNT 450 a 340 c 452 g 484 t ORIGIN BASE COUNT 450 a 340 c 452 g 484 t 4177 others ORIGIN 1 |~~~~~~~~~ ~~~~~AACCU GGU(UGA)UC CU|GCCAGU- A-GUCA-UAU --GCUUGUCU 61 UAAA|-GAUU AA-GCCAUGC A-UGUCU-AA GU|------- |--------- ----[----- 121 ---------- --------ac aaacuu---u ---------- -uuac-ggu- gaa]------ 181 -----|---A CU|G-CGAA- UGGCU-CAUU ACAA-cagu- uau-aguu-- ----ucuuug 241 guau<----- ---------- ---------- ---------- ---------- ----ucgcuu 301 u>CCAUGG-A UAACCGUGC( -U-AAUU)GU AGGGC-UAA- UACAAG---- ----(----) 361 ---------- -------(-- --)--|---- -- -ggaccauuc -aa|guuucu ga|--CCC-A UCA--GCUU- --GACGGUA- 1141 GG(-GUAUUG G)CCU-ACCG A-|GGCAG-C AAC|GGGU-A A-CGGG|GAA -U-(UAGG-) 1201 GUU-CGAUU- CCG|GAGAGG G-AGCC(U-G AGAAAC)GGC UACC-ACAUC (CAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GC- AAAUU-ACCC -AAUCCU-G( ---aca--)C 1321 AGGG-A-GGU -|A|GUGACA AGAA-AU--- ---------- -(----)--- ---------- 1381 -----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AA CAAUACAGG- -GC--(---- ---aauu)-- GU-CU-UGUA A-UUGGAAU- 1501 ------GAUG ----GUGACC -UAAA--CCC U-----CA-C C-AGA-GUAA C---->AAUU 1561 GGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCCAA 1621 U-AGUGUA|U AUUAA--ACU UGUUG-CAG| UUA--AAAAG CGCGUAGUUG |--------- 1681 ---------- ---------- ---------- ---------- ---------- -|-------< 1741 aauuuguugg g-ugguguua auauugac-u aau----guc gagauu-gca cu-ucgcuug 1801 gg-gg---au uu-agcc-cu ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- --UUUUACUU AG-AGAA--A 2461 AUUAGAGUGU CU-CA-AG-G AGACuugu-- ---------- ---------- ---------- 2521 ---------- GUCU-U--GA AUACUU-CAG CAUGGAA|UA -AUAGAG-UA -GGACuuuGG 2581 uu-------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- -cua|--uuu 2821 --u-guuggu -uu-gug--- --------aa CCu-uA-GUA A--UGGUUAA UA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGAA|CGGU ---------- 3001 --UGGGGGCA UU|--CGUAU UUAACUG-UC -AGAG(GU-G AAA---)UUC U-UAGA-U-U 3061 UGUUA-AAG- A-CGAACU-A CUGC(-GAAA )--GC|A--- UUUGCC-AA| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------ACG ---UUUUCAU -UAA-U|CA- A-GAACGAAA 3301 GUUAGGGGA- UCGAAGACG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CGUAG|UCC UA--ACC-AU AAACUAUGCC GAC|UA|--- 3421 --gggaa-ug gag-g-u--c guc-(----a uuuucc---) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- -----gac-u c-cu-uca-g -c-accuu-- ---------- ----gaGA(- 3661 GAAA-)UCa- -AAGUC-uuu gGGU|-U|C- UGGGGGGAGU AU--GG-UC( --GCAA-)GG 3721 CUG-AAACUU -AAAG--GAA -UUG|AC-GG -AA-GGGCA- -CCAC-CAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --C-GU|-GG 4021 AGCCUGCG|G CU-UAAUUUG (ACUCCA-CA )CGGG--GAA ACUCACCAGG UC[cag-aca 4081 augu-uagga uu-----gac aga(uugaua g-c)------ ucuuu----- cuu-gauu-c 4141 uuuggg---- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU-G-CAUG |GCC|GU-UC UUA|GUUGG- U|GGA(-GUG 4261 A-)UUUGUC- -UGG(UU-AA UU)CCGUUA- ACgGAACGAG ACCUU-AA|- ---------- 4321 ---------- ---[CCU-GC UAACUag-u- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- ---------- gucc--g--- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- -----uaaaa agguucgucc guuacgguuu 4801 gcu------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------U CUUAGAGG]- --|------- ---------- GACU-UUG-C -G-G(----- 5041 -cucuaag)C CGCA-A-GGA AGUU-UAAGG CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UG A|UGCC|CUU 5221 A-G-A-UGUC CUGG-GCUGC A-CGCGCGCU ACACU--G-A UGCAU----- ---------- 5281 ---------- -----[ucau cgagu----- ---------- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- ---------- ---------u 5401 uuauccc-uu ccc(gaaa-) gggc-u--gg guaau-cuu- --uagu]--- ---------- 5461 -------AUG CAU-C-G--- UGAC-G-GGG AUUGAUUUU( UGCAAUUC)U AAAUCAUG-A 5521 ACGAGG-AAU G--CCUAGUA UG-CGC-AAG (-UCAUCAG- )CUUGG-G-C -AGAUUACG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUCC-U-A CC-GAU--CG AG-UGAUcc- 5641 ggu-gaaa-- aaa-acggg- ccgu-ggcc- uuuc-cga-- ---------- ---------- 5701 -------(uu cg----)--- ---------- ---------- ---------- --uc-ggc-- 5761 uuggcc-uag -ggaa-|guc -uugugaacc uu-AUC-A-C UUAA-AGGAA GG-AGAA-G- 5821 UCGUAACAAG GU-------- -----U-U-C CGUAGG(UGA A)CCUGCGGA AGGAUCA--- 5881 --U~~~~~~~ ~~~~~~~~|| ||| // LOCUS B.equi 5903 bp RNA RNA 11-JAN-191 DEFINITION Babesia equi. ACCESSION No information KEYWORDS No information. SOURCE Babesia equi. ORGANISM Babesia equi. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: Z15105 ID BE18SRRN standard; DNA; INV; 1748 BP. XX AC Z15105; XX DT 14-SEP-1992 (Rel. 33, Created) DT 14-SEP-1992 (Rel. 33, Last updated, Version 1) XX DE B.equi gene encoding 18S ribosomal RNA XX KW 18S ribosomal RNA; ribosomal RNA. XX OS Babesia equi OC Eukaryota; Animalia; Protozoa; Microspora; Microsporea; OC Piroplasmia; Piroplasmida; Babesiidae. XX RN [1] RP 1-1748 RA Allsopp M.T., Cavalier-Smith T., de Waal T., Allsopp B.A.; RT "Origin of Theileria from Nicollia and a split from Babesia very RT early in piroplasm evolution."; RL Unpublished. XX RN [2] RP 1-1748 RA Allsopp B.A.; RT ; RL Submitted (14-SEP-1992) on tape to the EMBL Data Library by: RL Allsopp B. A., Onderstepoort Veterinary Institute, Molecular RL Biology, Onderstepoort, South Africa, 0110 XX CC *source: stage=Piroplasm; CC *source: tissue=Host blood (equine); CC *source: isolate=OP1; XX FH Key Location/Qualifiers FH FT rRNA 1..1748 FT /product= "18S ribosomal RNA" /citation= ([1]) XX SQ Sequence 1748 BP; 444 A; 331 C; 463 G; 509 T; 1 other; BASE COUNT 444 a 331 c 463 g 509 t 4156 others ORIGIN 1 |~~~~~~~~~ ~~~~~AACCU GGU(UGA)UC CU|GCCAGU- A-GUCA-UAU --GCUUGUCU 61 UAAA|-GAUU AA-GCCrUGC A-UGUCU-AA GU|------- |--------- ----[----- 121 ---------- --------au aagcuu--uu ---------- -auau-ggu- gaa]------ 181 -----|---A CU|G-CGAA- UGGCU-CAUU AAAA-cagu- uau-aguu-- ----uauuug 241 augu<----- ---------- ---------- ---------- ---------- ---uuguuuc 301 u>ACAUGG-A UAACCGUGC( -U-AAUU)GU AGGGC-UAA- UACAUG---- ----(----) 361 ---------- -------(-- --)--|---- -- -guaucauuc -aa|guuucu ga|--CCU-A UCA--GCUUU G-GACGGUA- 1141 GG(-GUAUUG G)CCU-ACCG G-|GGCAA-C GAC|GGGU-A A-CGGG|GAA -U-(UAGG-) 1201 GUU-CGAUU- CCG|GAGAGG G-AGCC(U-G AGAAAC)GGC UACC-ACAUC (UAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GC- AAAUU-ACCC -AAUCCU-G( ---aca--)C 1321 AGGG-A-GGU -|A|GUGACA AGAA-AU--- ---------- -(----)--- ---------- 1381 -----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AA CAAUACGGG- -GCu-(---- ---uga-)-a GU-CU-UGUA A-UUGGAAU- 1501 ------GAUG ----GGAAUC -UAAA--CCC c-----UU-C C-AGA-GUAU C---->AAUU 1561 GGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCCAA 1621 U-AGCGUA|U AUUAA--ACU UGUUG-CAG| UUA--AAAAG CUCGUAGUUG |--------- 1681 ---------- ---------- ---------- ---------- ---------- -|-------< 1741 aauuucugcu g-uuucguug acugcgcuug gcguuuguca ucguug-c-- ----ggcuug 1801 gu-ug---gg uu-ucga-uu auucguuucc cggc------ ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- --GUUUACUU UG-AGAA--A 2461 AUUAGAGUGC UU-GA-AG-C AGGCuuuu-- ---------- ---------- ---------- 2521 ---------- GCCU-U--GA AUACUU-UAG CAUGGAA|UA -ACAGAG-UA -GGACuUUGG 2581 uu-------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- -cua|---uu 2821 -uu-guuggu -uu-uagg-- --------ag CCA-GA-GUA A--UGGUUAA UA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGAA|CAGU ---------- 3001 --UGGGGGCA UU|--CGUAU UUGACUG-UC -AGAG(GU-G AAA---)UUC U-UAGA-U-U 3061 UGUCA-AAG- A-CGAACU-A CUGC(-GAAA )--GC|A--- UUUGCC-AA| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUG ---UUUUCAU -UAA-U|CA- A-GAACGAAA 3301 GUUAGGGGA- UCGAAGACG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CGUAG|UCC UA--ACC-AU AAACGAUGCC GAC|UA|--- 3421 --gagau-ug gag-g-u--c guc-(----a guuugaac-) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- -----gac-u c-cu-uca-g -c-accuu-- ---------- ----gaGA(- 3661 GAAA-)UCa- -AAGUC-uuu gGGU|-U|C- UGGGGGGAGU AU--GG-UC( --GCAA-)GG 3721 CUG-AAACUU -AAAG--GAA -UUG|AC-GG -AA-GGGCA- -CCAC-CAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --C-GU|-GG 4021 AGCCUGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--GAA ACUCACCAGG UC[cag-aca 4081 gagg-aagga uu-----gac aga(uugaua g-c)------ ucuuu----- cuu-gauu-c 4141 uuuggg---- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU-G-CAUG |GCC|GU-UC UUA|GUUGG- U|GGA(-GUG 4261 A-)UUUGUC- -UGG(UU-AA UU)CCGUUA- AC-GAACGAG ACCUU-AA|- ---------- 4321 ---------- ---[CCU-GC UAAAUAGggu g--ugagac- ---------u ug-------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- ---------- guuucau--- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ----uuccg- CU-------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------U CUUAGAGG]- --|------- ---------- GACU-UUG-C -G-G(----- 5041 -ucauaaa)U CGCA-A-GGA AGUU-UAAGG CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UG A|UGCC|CUU 5221 A-G-A-UGUC CUGG-GCUGC A-CGCGCGCU ACACU--G-A UGCAU----- ---------- 5281 ---------- -----[ucac ugagu----- ---------- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- ---------- ---------- 5401 guauccu-ug gcu(gaga-) ggcu-u--gg guaau-cuu- --uagu]--- ---------- 5461 -------AUG CAU-C-G--- UGAU-G-GGG AUUGAUUAU( UGUAAUUC)U UAAUCAUG-A 5521 ACGAGG-AAU G--CCUAGUA UG-CGC-AAG (-UCAUCAG- )CUUGU-G-C -AGACUACG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUCC-U-A CC-GAU--CG AG-UGAUcc- 5641 ggu-gaau-- uau-ucgga- cugu-gaug- uuuc-cuu-- ---------- ---------- 5701 -------(uu cu----)--- ---------- ---------- ---------- --uu-gga-- 5761 gacguc-uag -ggaa-|guu -uugugaacc uu-AUC-A-C UUAA-AGGAA GG-AGAA-G- 5821 UCGUAACAAA GU-------- -----U-U-C CGUAGG(UGA A)CCUGCAGA AGGAUC~~~~ 5881 ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS B.microt.1 5903 bp RNA RNA 11-JAN-191 DEFINITION Babesia microti. ACCESSION No information KEYWORDS No information. SOURCE Babesia microti. ORGANISM Babesia microti. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: S42454 M93660 LOCUS S110860 514 bp DNA NLM 30-OCT-1992 DEFINITION small subunit rRNA [Babesia microti, Genomic, 514 nt] ACCESSION S42454 M93660 KEYWORDS . SOURCE Babesia microti ORGANISM Babesia microti Unclassified. REFERENCE 1 (bases 1 to 514) AUTHORS Persing,D.H., Mathiesen,D., Marshall,W.F., Telford,S.R., Spielman,A., Thomford,J.W. and Conrad,P.A. TITLE Detection of Babesia microti by polymerase chain reaction. JOURNAL J. Clin. Microbiol. 30, 2097-2103 (1992) STANDARD full automatic COMMENT This entry incorporates information provided by the National Library of Medicine's GenInfo Backbone as NCBI gibbsq 110860. This sequence comes from Fig. 1. FEATURES Location/Qualifiers rRNA 1..514 /note="Description: small subunit rRNA" BASE COUNT 143 a 98 c 134 g 139 t ORIGIN BASE COUNT 143 a 98 c 134 g 139 t 5389 others ORIGIN 1 |~~~~~~~~~ ~~~~~nnnnn nnn(nnn)nn nn|nnnnnn- A-GUCA-UAU --GCUUGUCU 61 UAAA|-GAUU AA-GCCAUGC A-UGUCU-UA GU|------- |--------- ----[----- 121 ---------- --------au aagcuu--uu ---------- -auac-agc- gaa]------ 181 -----|---A CU|G-CGAA- UGGCU-CAUU AAAA-cagu- uau-aguu-- ----uauuug 241 augu<----- ---------- ---------- ---------- ---------- ----ucguuu 301 u>ACAUGG-A UAACCGUGG( -U-AAUU)CU AGGGC-UAA- UACAUG---- ----(----) 361 ---------- -------(-- --)--|---- -- -guaucauuc -aa|guuucu ga|--CCU-A UCA--GCUUU G-GACGGUA- 1141 GG(-GUAUUG G)CCU-ACCG G-|GGCGA-C GAC|GGGU-G A-CGGG|GAA -U-(UGGG-) 1201 GUU-CGAUU- CCG|GAGAGG G-AGCC(U-G AGAAAC)GGC UACC-ACAUC (UAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GC- AAAUU-ACCC -AAUCCU-G( ---aca--)C 1321 AGGG-A-GGU -|A|GUGACA AGAA-AU--- ---------- -(----)--- ---------- 1381 -----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AA CAAUACAGG- -GCu-(---- ----uaa)-a GU-CU-UGUA A-UUGGAAU- 1501 ------GAUG ----GGAAUC -UAAA--CCC U-----UC-C C-AGA-GUAU C---->AAUU 1561 GGAG|GG-CA ~~~~~~~~~~ ~~~(~~~~~~ ~~~~~|~~~~ ~~~~~)~~~~ ~~-|~~~~~~ 1621 ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ 1681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|~~~~~~~< 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~|~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~|~~~~~ 2821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~>~~~~ 2881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~|~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~~ ~~|-~~~~~~ ~~~~~~~~~~ ~~~~~(~~~~ ~~~~~~)~~~ ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~~ )~~~~|~~~~ ~~~~~~~~~| ~~~~~~~(~~ 3121 ~~)~~~~~~~ ~~~~~~~~~~ ~|~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ 3301 ~~~~~~~~~~ ~~~~~~~~~( ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3361 ~~~~~~~~~~ ~~~~~)~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~|~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~~ ~~~~~~~~~) ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ 3661 ~~~~~)~~~~ ~~~~~~~~~~ ~~~~|~~|~~ ~~~~~~~~~~ ~~~~~~~~~( ~~~~~~~)~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ 4021 ~~~~~~~~|~ ~~~~~~~~~~ (~~~~~~~~~ )~~~~~~~~~ ~~~~~~~~~~ ~~[~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~(~~~~~~ ~~~)~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~]~~~~~~~~ |~~~~~~~~~ ~~~~~(~~~~ )~~~~~~~~~ ~~~(~~~~)~ 4201 ~~~|~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ |~~~|~~~~~ ~~~|~~~~~~ ~|~~~(~~~~ 4261 ~~)~~~~~~~ ~~~~(~~~~~ ~~)~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~[~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~~~~~~~~~ ~~~~~~~~]~ ~~|~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~~ 5041 ~~~~~~~~)~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|~~~~|~~~ 5221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5281 ~~~~~~~~~~ ~~~~~[~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5341 ~~~~~~~~~~ ~~~~~~~~~( ~~~~~)~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5401 ~~~~~~~~~~ ~~~(~~~~~) ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~]~~~ ~~~~~~~~~~ 5461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~( ~~~~~~~~)~ ~~~~~~~~~~ 5521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ (-~~~~~~~~ )~~~~~~~~~ ~~~~~~~~~~ 5581 ~~~~~~~~~~ ~~|~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5701 ~~~~~~~(~~ ~~~~~~)~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5761 ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~)~~~~~~~~ ~~~~~~~~~~ 5881 ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS B.microt.2 5903 bp RNA RNA 11-JAN-191 DEFINITION Babesia microti. ACCESSION No information KEYWORDS No information. SOURCE Babesia microti. ORGANISM Babesia microti. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: U09833 LOCUS BMU09833 1763 bp rRNA INV 06-JUN-1994 DEFINITION Babesia microti 16S-like small-subunit rRNA. ACCESSION U09833 KEYWORDS . SOURCE Babesia microti ORGANISM Babesia microti Eukaryotae; Hyperchondria; Eukaryote crown group; Alveolates; Apicomplexa; Piroplasmids; Babesiidae; Babesia. REFERENCE 1 (bases 1 to 1763) AUTHORS Allsopp,M.T. TITLE Phylogeny of Babesia, Theileria and related parasites and development of species-specific probes for diagnostic purposes JOURNAL Thesis (1994) Molecular Biology, Onderstepoort Veterinary Institute STANDARD full automatic REFERENCE 2 (bases 1 to 1763) AUTHORS Allsopp,M.T. TITLE Direct Submission JOURNAL Submitted (18-MAY-1994) Maria T. Allsopp, Onderstepoort Veterinary Institute, Molecular Biology, Onderstepoort, 0110, South Africa STANDARD full automatic COMMENT NCBI gi: 497258 FEATURES Location/Qualifiers rRNA 1..1763 /product="16S-like rRNA" /note="small-subunit ribosomal RNA" source 1..1763 /lab_host="Mus musculus" /organism="Babesia microti" /isolate="Ruebush-Peabody (non-lethal)" /dev_stage="piroplasm" /note="from host blood (murine)" BASE COUNT 461 a 345 c 454 g 503 t ORIGIN BASE COUNT 461 a 345 c 454 g 503 t 4140 others ORIGIN 1 |~~~~~~~~~ ~~~~~AACCU GGU(UGA)UC CU|GCCAGU- A-GUCA-UAU --GCUUGUCU 61 UAAA|-GAUU AA-GCCAUGC A-UGUCU-UA GU|------- |--------- ----[----- 121 ---------- --------au aagcuu--uu ---------- -auac-agc- gaa]------ 181 -----|---A CU|G-CGAA- UGGCU-CAUU AAAA-cagu- uau-aguu-- ----uauuug 241 augu<----- ---------- ---------- ---------- ---------- ----ucguuu 301 u>ACAUGG-A UAACCGUGG( -U-AAUU)CU AGGGC-UAA- UACAUG---- ----(----) 361 ---------- -------(-- --)--|---- -- -guaucauuc -aa|guuucu ga|--CCU-A UCA--GCUUU G-GACGGUA- 1141 GG(-GUAUUG G)CCU-ACCG G-|GGCGA-C GAC|GGGU-G A-CGGG|GAA -U-(UGGG-) 1201 GUU-CGAUU- CCG|GAGAGG G-AGCC(U-G AGAAAC)GGC UACC-ACAUC (UAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GC- AAAUU-ACCC -AAUCCU-G( ---aca--)C 1321 AGGG-A-GGU -|A|GUGACA AGAA-AU--- ---------- -(----)--- ---------- 1381 -----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AA CAAUACAGG- -GCu-(---- ----uaa)-a GU-CU-UGUA A-UUGGAAU- 1501 ------GAUG ----GGAAUC -UAAA--CCC U-----UC-C C-AGA-GUAU C---->AAUU 1561 GGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCCAA 1621 U-AGCGUA|U AUUAA--AGU UGUUG-CAG| UUA--AGAAG CUCGUAGUUG |--------- 1681 ---------- ---------- ---------- ---------- ---------- -|-------< 1741 aauuucugc- -----c---- ---------- ---------- -uuguc-a-u ---------- 1801 ---------- -----ua-a- ucucgc-u-- -uc------- --cgag---- -c-------- 1861 guuuuuuuau u--gacuugg cauc--uucu ggauuuggug cc-uucgggu acuau----- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ------uuuc cagg------ ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- --AUUUACUU UG-AGAA--A 2461 ACUAGAGUGU UU-CA-AA-C AGGCauuc-- ---------- ---------- ---------- 2521 ---------- GCCU-U--GA AUACUA-CAG CAUGGAA|UA -AUGAAG-UA -GGACuUUGG 2581 uu-------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- -cua|--uuu 2821 --u-guuggu -ua-uug--- --------ag CCA-GA-GUA A--UGGUUAA UA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGAG|CAGU ---------- 3001 --UGGGGGCA UU|--CGUAU UUAACUG-UC -AGAG(GU-G AAA---)UUC U-UAGA-U-U 3061 UGUUA-AAG- A-CGAACU-A CUGC(-GAAA )--GC|A--- UUUGCC-AA| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUG ---UUUUCAU -UAA-U|CA- A-GAACGAAA 3301 GUUAGGGGA- UCGAAGACG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CGUAG|UCC UA--ACC-AU AAACUAUGCC GAC|UA|--- 3421 --gagau-ug gag-g-u--c guc-(----a guuuaaac-) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- -----gac-u c-cu-uca-g -c-accuu-- ---------- ----gaGA(- 3661 GAAA-)UCa- -AAGUC-uuu gGGU|-U|C- UGGGGGGAGU AU--GG-UC( --GCAA-)GU 3721 CUG-AAACUU -AAAG--GAA -UUG|AC-GG -AA-GGGCA- -CCAC-CAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --C-GU|-GG 4021 AGCCUGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--AAA CCUCACCAGG UC[cag-aca 4081 uaga-gagga uu-----gac aga(uugaua g-c)------ ucuuu----- cuu-gauu-c 4141 uauggg---- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU-G-CAUG |GCC|GU-UC UUA|GUUGG- U|GGA(-GUG 4261 A-)UUUGUC- -UGG(UU-AA UU)CCGUUA- AC-GAACGAG ACCUU-AA|- ---------- 4321 ---------- ---[CCU-GC UAAAUuagga ---ucuggga caagcu---u ugcu------ 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- ---------- guuccagu-- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ----auc-gc u--------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------U CUUAGAGG]- --|------- ---------- GACU-UUG-C -G-U(----- 5041 -ucauaaa)A CGCA-A-GGA AGUG-UAAGG CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UG A|UGCC|CUU 5221 A-G-A-UGUC CUGG-GCUGC A-CGCGCGCU ACACU--G-A UGCAU----- ---------- 5281 ---------- -----[ucaa cgagu----- ---------- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- ---------- ---------- 5401 uuuuccu-ug gcc(gucg-) gguc-c--gg guaau-cuu- -acagu]--- ---------- 5461 -------AUG CAU-C-G--- UGAU-G-GGG AUAGAUUAU( UGCAAUUA)U UAAUCUUG-A 5521 ACGAGG-AAU G--CCUAGUA GG-CGC-GAG (-UCAUCAG- )CUCGU-G-C -CGACUACG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUCC-U-A CC-GAU--CG AG-UGAUcc- 5641 ggu-gaau-- uau-ucgga- ccaa-gaaa- cgu--gga-- ---------- ---------- 5701 -------(uu cg----)--- ---------- ---------- ---------- --uc-cuu-- 5761 cguuuu-uug -gaaa-|guu -uugugaacc uu-AUC-A-C UUAA-AGGAA GG-AGAA-G- 5821 UCGUAACAAG GU-------- -----U-U-C CGUAGG(UGA A)CCUGCAGA AGGAUC~~~~ 5881 ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS B.odocoile 5903 bp RNA RNA 11-JAN-191 DEFINITION Babesia odocoilei. ACCESSION No information KEYWORDS No information. SOURCE Babesia odocoilei. ORGANISM Babesia odocoilei. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: U16369 LOCUS BOU16369 1723 bp ds-DNA INV 15-NOV-1994 DEFINITION Babesia odocoilei 18S rRNA gene, complete sequence. ACCESSION U16369 KEYWORDS . SOURCE Babesia odocoilei. ORGANISM Babesia odocoilei Eukaryotae; Hyperchondria; Eukaryote crown group; Alveolates; Apicomplexans; Piroplasmids; Babesiidae; Babesia. REFERENCE 1 (bases 1 to 1722) AUTHORS Holman,P.J. TITLE Comparative Study of Cervid Babesia Isolates JOURNAL Thesis (1994) Veterinary Pathobiology, Texas A&M University STANDARD full automatic REFERENCE 2 (bases 1 to 1723) AUTHORS Holman,P.J. TITLE Direct Submission JOURNAL Submitted (27-OCT-1994) Patricia Holman, Texas A&M University, Veterinary Pathobiology, College Station, TX 77843, USA STANDARD full automatic COMMENT NCBI gi: 571461 FEATURES Location/Qualifiers source 1..1723 /lab_host="Cervus elaphus canadensis" /organism="Babesia odocoilei" /specific_host="Odocoileus virginianus" rRNA 1..1723 /product="18S rRNA" BASE COUNT 440 a 345 c 440 g 498 t ORIGIN BASE COUNT 440 a 345 c 440 g 498 t 4180 others ORIGIN 1 |~~~~~~~~~ ~~~~~AACCU GGU(UGA)UC CU|GCCAGU- A-GUCA-UAU --GCUUGUCU 61 UAAA|-GAUU AA-GCCAUGC A-UugCU-AA GU|------- |--------- ----[----- 121 ---------- --------ac aaacuu---u ---------- -uuac-ggu- gaa]------ 181 -----|---A CU|G-CGAA- UGGCU-CAUU ACAA-cagu- uau-aguu-- ----ucuuug 241 guau<----- ---------- ---------- ---------- ---------- ----ucguuu 301 u>CCAUGG-A UAACCGUGC( -U-AAUU)GU AGGGC-UAA- UACAAG---- ----(----) 361 ---------- -------(-- --)--|---- -- -ggaccauuc -aa|guuucu ga|--CCC-A UCA--GCUU- --GACGGUA- 1141 GG(-GUAUUG G)CCU-ACCG A-|GGCAG-C AAC|GGGU-A A-CGGG|GAA -U-(UAGG-) 1201 GUU-CGAUU- CCG|GAGAGG G-AGCC(U-G AGAAAC)GGC UACC-ACAUC (CAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GC- AAAUU-ACCC -AAUCCU-G( ---aca--)C 1321 AGGG-A-GGU -|A|GUGACA AGAA-AU--- ---------- -(----)--- ---------- 1381 -----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AA CAAUACAGG- -GC--(---- ---aauu)-- GU-CU-UGUA A-UUGGAAU- 1501 ------GAUG ----GUGACC -UAAA--CCC U-----CA-C C-AGA-GUAA C---->AAUU 1561 GGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCCAA 1621 U-AGCGUA|U AUUAA--ACU UGUUG-CAG| UUA--AAAAG CUCGUAGUUG |--------- 1681 ---------- ---------- ---------- ---------- ---------- -|-------< 1741 aauuucugcg u-caccguau uuu------- -----ga--- ---cuu-uug ucgacugucg 1801 gu-uu----- --------c- --gcuu---- -uugggauuu aucccu---- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- --UUUUACUU UG-AGAA--A 2461 AUUAGAGUGU UU-CA-AG-C AGACuuuu-- ---------- ---------- ---------- 2521 ---------- GUCU-U--GA AUACUU-CAG CAUGGAA|UA -AUAGAG-UA -GGACuuuGG 2581 uu-------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- -cua|--uuu 2821 --u-guuggu -uu-gug--- --------aa CCu-uA-GUA A--UGGUUAA UA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGAA|CGGU ---------- 3001 --UGGGGGCA UU|--CGUAU UUAACUG-UC -AGAG(GU-G AAA---)UUC U-UAGA-U-U 3061 UGUUA-AAG- A-CGAACU-A CUGC(-GAAA )--GC|A--- UUUGCC-AA| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------ACG ---UUUUCAU -UAA-U|CA- A-GAACGAAA 3301 GUUAGGGGA- UCGAAGACG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CGUAG|UCC UA--ACC-AU AAACUAUGCC GAC|UA|--- 3421 --gggau-ug gag-g-u--c guc-(----a uuuuucc--) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- -----gac-u c-cu-uca-g -c-accuu-- ---------- ----gaGA(- 3661 GAAA-)UCa- -AAGUC-uuu gGGU|-U|C- UGGGGGGAGU AU--GG-UC( --GCAA-)GG 3721 CUG-AAACUU -AAAG--GAA -UUG|AC-GG -AA-GGGCA- -CCAC-CAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --C-GU|-GG 4021 AGCCUGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--GAA ACUCACCAGG UC[cag-aca 4081 augu-uagga uu-----gac aga(uugaua g-c)------ ucuuu----- cuu-gauu-c 4141 uuuggg---- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU-G-CAUG |GCC|GU-UC UUA|GUUGG- U|GGA(-GUG 4261 A-)UUUGUC- -UGG(UU-AA UU)CCGUUA- AC-GAACGAG ACCUU-AA|- ---------- 4321 ---------- ---[CCU-GC UAACUag-ug cccgug-aga ag-------g uuc------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- ---------- gucc--g--- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- -----uua-- cggguugcu- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------U CUUAGAGG]- --|------- ---------- GACU-UUG-C -G-G(----- 5041 -cucuaag)C CGCA-A-GGA AGUU-UAAGG CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UG A|UGCC|CUU 5221 A-G-A-UGUC CUGG-GCUGC A-CGCGCGCU ACACU--G-A UGCAU----- ---------- 5281 ---------- -----[ucau cgagu----- ---------- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- ---------- ---------u 5401 uuauccc-ug ccc(gaaa-) gggc-u--gg guaau-cuu- --uagu]--- ---------- 5461 -------AUG CAU-C-G--- UGAC-G-GGG AUUGAUUUU( UGCAAUUC)U AAAUCAUG-A 5521 ACGAGG-AAU G--CCUAGUA UG-CGC-AAG (-UCAUCAG- )CUUGA-G-C -AGAUUACG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUCC-U-A CC-GAU--CG AG-UGAUcc- 5641 ggu-gaau-- uau-ucgga- ccgu-ggcu- uuuc-cga-- ---------- ---------- 5701 -------(uu cg----)--- ---------- ---------- ---------- --uc-ggu-- 5761 uuugcc-uag -ggaa-|guc -ucgugaacc uu-AUC-A-C UUAA-AGGAA GG-AGAA-G- 5821 UCGUAACAAG GU-------- -----U-U-C CGUAGG(UGA A)CCUGCAGA AGGAUC~~~~ 5881 ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS B.rodhaini 5903 bp RNA RNA 11-JAN-191 DEFINITION Babesia rodhaini. ACCESSION No information KEYWORDS No information. SOURCE Babesia rodhaini. ORGANISM Babesia rodhaini. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: M87565 LOCUS BBORRNAA 1684 bp DNA INV 13-NOV-1992 DEFINITION Babesia rodhaini ribosomal RNA gene sequence. ACCESSION M87565 NID g155922 KEYWORDS ribosomal RNA gene. SOURCE Babesia rodhaini merozoite DNA. ORGANISM Babesia rodhaini Eukaryotae; mitochondrial eukaryotes; Alveolata; Apicomplexa; Piroplasmida; Babesiidae; Babesia. REFERENCE 1 (bases 1 to 1684) AUTHORS Ellis,J., Hefford,C., Baverstock,P., Dalrymple,B.P. and Johnson,A. TITLE Ribosomal RNA sequence comparison of Babesia and Theileria JOURNAL Mol. Biochem. Parasitol. 54, 87-96 (1992) MEDLINE 92389993 BASE COUNT 460 a 323 c 418 g 483 t BASE COUNT 460 a 323 c 418 g 483 t 4219 others ORIGIN 1 |~~~~~~~~~ ~~~~~nnnnn nnn(nnn)nn nn|nnnnnn- n-nnnA-UAU --GCUUGUCU 61 UAAA|-GAUU AA-GCCAUGC A-UGUCU-AA GU|------- |--------- ----[----- 121 ---------- --------au aagcuu--uu ---------- -auac-agc- gaa]------ 181 -----|---A CU|G-CGAA- UGGCU-CAUU AAAA-cagu- uau-aguu-- ----uauuug 241 augu<----- ---------- ---------- ---------- ---------- ----uuuuau 301 u>ACAUGG-A UAACCGUGG( -U-AAUU)CU AGGGC-UAA- UACAUG---- ----(----) 361 ---------- -------(-- --)--|---- -- -guaucauuc -aa|guuucu ga|--CCU-A UCA--GCUUU G-GACGGUA- 1141 GG(-GUAUUG G)CCU-ACCG G-|GGCGA-C GAC|GGGU-A A-CGGG|GAA -U-(UGGG-) 1201 GUU-CGAUU- CCG|GAGAGG G-AGCC(U-G AGAAAC)GGC UACC-ACAUC (UAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GC- AAAUU-ACCC -AAUCCU-G( ---aca--)C 1321 AGGG-A-GGU -|A|GUGACA AGAA-AU--- ---------- -(----)--- ---------- 1381 -----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AA CAAUACAGG- -GCu-(---- ----caa)-a GC-UU-UGUA A-UUGGAAU- 1501 ------GAUG ----GGAAUC -UAAA--CCC U-----UC-C C-AGC-GUAU C---->AAUU 1561 GGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCCAA 1621 U-AGCGUA|U AUUAA--AGU UGUUG-CAG| UUA--AGAAG CUCGUAGUUG |--------- 1681 ---------- ---------- ---------- ---------- ---------- -|-------< 1741 aauuucugcc u-cgucguuu augcucgcuu ccaagcguuu guaauu-gac uuggcaucuu 1801 ug-ug---ga uu-agug-cg caagcauuuu uccacu---- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- --AUUUACUU UG-AGAA--A 2461 ACUAGAGUGU UU-CA-AA-C AGCAauu--- ---------- ---------- ---------- 2521 ---------- GCCU-U--GA AUACUA-CAG CAUGGAA|UA -AUAAAG-UA -GGACuuUGG 2581 uu-------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- -cua|--uuu 2821 --u-guuggu -uu-uug--- --------ag CCA-uA-GUA A--UGGUUAA UA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGAG|CAGU ---------- 3001 --UGGGGGCA UU|--CGUAU UUAACUG-UC -AGAG(GU-G AAA---)UUC U-UAGA-U-U 3061 UGUUA-AAG- A-CGAACU-A CUGC(-GAAA )--GC|A--- UUUGCC-AA| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUG ---UUUUCAU -UAA-U|CA- A-GAACGAAA 3301 GUUAGGGGA- UCGAAGACG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CGUAG|UCC UA--ACC-AU AAACUAUGCC GAC|UA|--- 3421 --gagau-ug gag-g-u--c guc-(----a guuuaaac-) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- -----gac-u c-cu-uca-g -c-accuu-- ---------- ----gaGA(- 3661 GAAA-)UCa- -AAGUC-uuu gGGU|-U|C- UGGGGGGAGU AU--GG-UC( --GCAA-)GU 3721 CUG-AAACUU -AAAG--GAA -UUG|AC-GG -AA-GGGCA- -CCAC-CAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --C-GU|-GG 4021 --CAGGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--AAA CCUCACCAGG UC[cag-aca 4081 uaga-aauga uu-----gac aga(uugaua g-c)------ ucuuu----- cuu-gauu-c 4141 uauggg---- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU-G-CAUG |GCC|GU-UC UUA|GUUGG- U|GGA(-GUG 4261 A-)UUUGUC- -UGG(UU-AA UU)CCGUUA- AC-GAACGAG ACCUU-AA|- ---------- 4321 ---------- ---[CCU-GC UAAauuagga u--augggac u-------ac auuu-c---- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- --------ag ucuc--au-- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ----uaucg- cu-------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 --------uc uUgAGAGG]- --|------- ---------- GACU-UUG-C -G-U(----- 5041 -ucauaaa)A CGCA-A-GGA AGUG-UAAGG CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UG A|U-CC|CUU 5221 A-G-A-UGUC CUGG-GCUGC A-CGCGCGCU ACACU--G-A UGCAU----- ---------- 5281 ---------- -----[ucaa cgagu----- ---------- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- ---------- ---------- 5401 uu-uccu-ug gcc(ggaa-) gucc----gg guaau-cuu- -acagu]--- ---------- 5461 -------AUG CAU-C-G--- UGAU-G-GGG AUAGAUUAU( UGCAAUUA)U UAAUCUUG-A 5521 ACGAGG-AAU G--CCUAGUA GG-CGC-GAG (-UCAUCAG- )CUCGU-G-C -C-ACUACG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUCC-U-A CC-GAU--CG AG-UGAUcc- 5641 ggu-gaau-- uau-ucgga- cuga-agaa- c-uu-aga-- ---------- ---------- 5701 -------(uu cg----)--- ---------- ---------- ---------- --uc-uaa-- 5761 aguuuu-uug -g-aa-|guu -uugugaacc uu-AUC-A-C UUAA-AGGAA GG-AGAA-G- 5821 UCGUAACnnn nn-------- -----n-n-n nnnnnn(nnn n)nnnnnnnn nnnnnnn--- 5881 --nnn~~~~~ ~~~~~~~~|| ||| // LOCUS Babesia.sp 5903 bp RNA RNA 11-JAN-191 DEFINITION Babesia sp.. ACCESSION No information KEYWORDS No information. SOURCE Babesia sp. ORGANISM Babesia sp. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: U09834 LOCUS BSU09834 1700 bp rRNA INV 06-JUN-1994 DEFINITION Babesia sp. 16S-like small-subunit rRNA. ACCESSION U09834 KEYWORDS . SOURCE Babesia sp. ORGANISM Babesia sp. Eukaryotae; Hyperchondria; Eukaryote crown group; Alveolates; Apicomplexa; Piroplasmids; Babesiidae; Babesia. REFERENCE 1 (bases 1 to 1630) AUTHORS Allsopp,M.T. TITLE Phylogeny of Babesia, Theileria and related parasites and development of species-specific probes for diagnostic purposes JOURNAL Thesis (1994) Molecular Biology, Onderstepoort Veterinary Institute STANDARD full automatic REFERENCE 2 (bases 1 to 1700) AUTHORS Allsopp,M.T. TITLE Direct Submission JOURNAL Submitted (18-MAY-1994) Maria T. Allsopp, Onderstepoort Veterinary Institute, Molecular Biology, Onderstepoort, 0110, South Africa STANDARD full automatic COMMENT NCBI gi: 497259 FEATURES Location/Qualifiers rRNA 1..1700 /product="16S-like rRNA" /note="small-subunit ribosomal RNA" source 1..1700 /organism="Babesia sp." /specific_host="Bos taurus" /isolate="field isolate" /dev_stage="piroplasm" /note="from host blood (bovine)" BASE COUNT 427 a 345 c 435 g 493 t ORIGIN BASE COUNT 427 a 345 c 435 g 492 t 4204 others ORIGIN 1 |~~~~~~~~~ ~~~~~AACCU GGU(UGA)UC CU|GCCAGU- A-GUCA-UAU --GCUUGUCU 61 UAAA|-GAUU AA-GCCAUGC A-UGUCU-AA GU|------- |--------- ----[----- 121 ---------- --------ac aagcuu--uu ---------- --uac-ggu- gaa]------ 181 -----|---A CU|G-CGAA- UGGCU-CAUU ACAA-cagu- uau-aguu-- ----uauuug 241 guau<----- ---------- ---------- ---------- ---------- ----ucguuu 301 u>ACAUGG-A UAACCGUGC( -U-AAUU)GU AGGGC-UAA- UACAAG---- ----(----) 361 ---------- -------(-- --)--|---- -- -ggcccauuc -aa|guuucu ga|--CCC-A UCA--GCUU- --GACGGUA- 1141 GG(-GUAUUG G)CCU-ACCG A-|GGCAG-C AAC|GGGU-A A-CGGG|GAA -U-(UAGG-) 1201 GUU-CGAUU- CCG|GAGAGG G-AGCC(U-G AGAAAC)GGC UACC-ACAUC (UAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GC- AAAUU-ACCC -AAUCCU-G( ---aca--)C 1321 AGGG-A-GGU -|A|GUGACA AGAA-AU--- ---------- -(----)--- ---------- 1381 -----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AA CAAUACAGG- -GC--(---- ---uacu)-- GU-CU-UGUA A-UUGGAAU- 1501 ------GAUG ----GUGACU -UAAA--CCC U-----CA-C C-AGA-GUAC C---->AAUU 1561 GGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCCAA 1621 U-AGCGUA|U AUUAA--ACU UGUUG-CAG| UUA--AAAAG CUCGUAGUUG |--------- 1681 ---------- ---------- ---------- ---------- ---------- -|-------< 1741 aauuucagcg u-uucgcgug ugccucuuuu ggcccaucuc gucucg-cuu uuuu------ 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- --UAUUACUU UG-AGAA--A 2461 AUUAGAGUGU UU-CA-AG-C AGGCuuuu-- ---------- ---------- ---------- 2521 ---------- GUCU-U--GA AUACUU-GAG CAUGGAA|UA -AUAGAG-UA -GGACcuuGG 2581 uu-------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- -cua|--uuu 2821 --u-guuggu -uu-ugu--- --------ua CCu-uG-GUA A--UGGUUAA UA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGAA|CGGU ---------- 3001 --UGGGGGCA UU|--CGUAU UUAACUG-UC -AGAG(GU-G AAA---)UUC U-UAGA-U-U 3061 UGUUA-AAG- A-CGAACU-A CUGC(-GAAA )--GC|A--- UUUGCC-AA| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------ACG ---UUUCCAU -UAA-U|CA- A-GAACGAAA 3301 GUUAGGGGA- UCGAAGACG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CGUAG|UCC UA--ACC-AU AAACUAUGCC GAC|UA|--- 3421 --gggau-ug gag-g-u--c guc-(----a uuuuucc--) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- -----gac-u c-cu-uca-g -c-accuu-- ---------- ----gaGA(- 3661 GAAA-)UCa- -AAGUC-uuu gGGU|-U|C- UGGGGGGAGU AU--GG-UC( --GCAA-)GU 3721 CUG-AAACUU -AAAG--GAA -UUG|AC-GG -AA-GGGCA- -CCAC-CAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --C-GU|-GG 4021 AGCCUGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--GAA CCUCACCAGG UC[cag-aca 4081 agga-aagga uu-----gac aga(uugaua g-c)------ ucuuu----- cuu-gauu-c 4141 uuuggg---- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UA-GU- GGU-G-CAUG |GCC|GU-UC UUA|GUUGG- U|GGA(-GUG 4261 A-)UUUGUC- -UGG(UU-AA UU)CCGUUA- AC-GAACGAG ACCUU-AA|- ---------- 4321 ---------- ---[CCU-GC UAuuuagcuu ucguuacuug gu-------u cgcu-aagc- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- ---------- ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ----u----- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------U CUUAGAGG]- --|------- ---------- GACU-CUG-C -G-G(----- 5041 -cuucaag)U CGCA-G-GGA AGUU-UAAGG CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UG A|UGCC|CUU 5221 A-G-A-UGUC CUGG-GCUGC A-CGCGCGCU ACACU--G-A UGCAU----- ---------- 5281 ---------- -----[gcau cgagu----- ---------- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- ---------- ---------- 5401 uuauccu-gc ucc(gaaa-) ggug-c--gg guaac-cau- --uagu]--- ---------- 5461 -------CUG CAU-C-G--- UGUC-G-GGG AUUGAUUUU( UGCAAUUC)U AAAUCAUG-A 5521 ACGAGG-AAU G--CCUAGUA UG-CGC-AAG (-UCAUCAG- )CUUGU-G-C -AGAUUACG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUCC-U-A CC-GAU--CG AG-UGAUcc- 5641 ggu-gaau-- uau-ucgga- ccgu-ggcu- uuuc-cga-- ---------- ---------- 5701 -------(uu cg----)--- ---------- ---------- ---------- --uc-ggu-- 5761 uuugcc-uag -ggaa-|guu -uugugaacc uu-AUC-A-C UUAA-AGGAA GG-AGAA-G- 5821 UCGUAACAAG GU-------- -----U-U-C CGUAGG(UGA A)CCUGCAGA AGGAUC~~~~ 5881 ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS Cyt.felis 5903 bp RNA RNA 11-JAN-191 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: L19080 LOCUS CXZRR18S 1774 bp ss-rRNA RNA 03-JUN-1993 DEFINITION Cytauxzoon felis 18S ribosomal RNA. ACCESSION L19080 KEYWORDS 18S ribosomal RNA; ribosomal RNA small subunit. SOURCE Cytauxzoon felis (individual_isolate stabilate 153) piroplasm rRNA. ORGANISM Cytauxzoon felis Eukaryota; Animalia; Chordata; Vertebrata; Mammalia; Theria; Eutheria; Carnivora; Feliforma; Felidae. REFERENCE 1 (bases 1 to 1774) AUTHORS Allsopp,M.T., Cavalier-Smith,T., de Waal,T. and Allsopp,B.A. TITLE Phylogeny and evolution of the piroplasms JOURNAL Parasitology (1993) In press STANDARD full automatic FEATURES Location/Qualifiers rRNA 1..1774 /product="18S ribosomal RNA" /gene="18S rRNA" /note="putative" source 1..1774 /organism="Cytauxzoon felis" /isolate="stabilate 153" /dev_stage="piroplasm" /sequenced_mol="rRNA" BASE COUNT 485 a 320 c 442 g 525 t 2 others ORIGIN BASE COUNT 485 a 320 c 442 g 525 t 4131 others ORIGIN 1 |~~~~~~~~~ ~~~~~AACCU GGU(UGA)UC CU|GCCAGU- A-GUCA-UAU --GCUUGUCU 61 UAAA|-GAUU AA-GCCAUGC A-UGUCU-AA GU|------- |--------- ----[----- 121 ---------- --------au aagcuuuu-- ---------- -auau-ggu- gaa]------ 181 -----|---A CU|G-CGAA- UGGCU-CAUU AAAA-cagn- uau-aauu-- ----uauuug 241 auau<----- ---------- ---------- ---------- ---------- ---ucguuuc 301 u>ACAUGG-A UAACCGUGC( -U-AAUU)GU AGGGC-UAA- UACAUG---- ---------- 361 ---------- ---------- ---------- -- -guaucauuc -aa|guuucu ga|--CCU-A UCA--GCUUU G-GACGGUA- 1141 GG(-GUAUUG G)CCU-ACCG G-|GGCAG-C GAC|GGGU-A A-CGGG|GAA -U-(UAGG-) 1201 GUU-CGAUU- CCG|GAGAGG G-AGCC(U-G AGAAAU)GGC UACC-ACAUC (UAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GU- AAAUU-ACCC -AAUCCU-A( ---aca--)C 1321 AGGG-A-GGU -|A|GUGACA AGAA-AU--- ---------- ---------- ---------- 1381 -----|---- ---------- ---------- ---------- ---------- ---------- 1441 --------AA CAAUACGAG- -GCU-(---- ---uaa-)-A GU-CU-UGUA A-UUGGAAU- 1501 ------GACG ----GAAAUU -UAAG--CUC U-----UU-C C-GGA-GUAU C---->AAUU 1561 GGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCCAA 1621 U-AGCGUA|U AUUAA--ACU UGUUG-CAG| UUA--AAAAG CUCGUAGUUG |--------- 1681 ---------- ---------- ---------- ---------- ---------- -|-------< 1741 aauuucugcu g-ca-----u ca--uu---- ---------- ----ua-uau ---------- 1801 ---------- -----uc-c- ---uua-auc -gguu---ua --uuua-ugu ug-------- 1861 uggcuuuuuc u-ggugauua -uauuucggu augau--uau cca------- g--------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ------auu- --guua---c u-----uuga g------a-- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- -aaa------ ---------- 2221 ---uuagagu gcuuaaagca ggcuuuug-- ---ccuugaa uacuuuagca ugg-a----- 2281 ---------- ---------- ---------- ---------- --------au a--ac----- 2341 --ua--agua gg-------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- --------ac ---------- 2461 ---------- -----uuugg uu--c----- ---------- ---------- ---------- 2521 ---------- ---------u auuu------ ---------- -----ugu-- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---ugguu-u aagagccaaa -gu---aaug 2761 auua--a--- ---------- ---------- ---------- ---------- ---------u 2821 -a-------- ---------- ---------- ---------- ---------- ---------- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGAA|CAGU ---------- 3001 --UGGGGGCA UU|--CGUAU UUAACUG-UC -AGAG(GU-G AAA---)UUC U-UAGA-U-U 3061 UGUUA-AAG- A-CGAACU-A CUGC(-GAAA )--GC|A--- UUUGCC-AA| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUG ---UUUUCAU -UAA-U|CA- A-GAACGAAA 3301 GUUAGGGGA- UCGAAGACG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CGUAG|UCC UA--ACC-AU AAACUAUGCC GAC|UA|--- 3421 --gagau-ug gag-g-u--c gucag(---u uugaa----) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ----cgac-u c-cu-uca-g -c-accuu-- ---------- ----gaGA(- 3661 GAAA-)UCa- -AAGUC-uuu gGGU|-U|C- UGGGGGGAGU AU--GG-UC( --GCAA-)GG 3721 CUG-AAACUU -AAAG--GAA -UUG|AC-GG -AA-GGGCA- -CCAC-CAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --C-GU|-GG 4021 AGCCUGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--AAA ACUUACCAGG UC[cag-aca 4081 gagg-aagga uu-----gac aga(uugaua g-c)------ ucuuu----- cuu-gauu-c 4141 uuuggg---- -]-------- |--------- ---------- ---------- ---------- 4201 ---------- ---|UG-GU- GGU-G-CAUG |GCC|GU-UC UUA|GUUGG- U|GGA(-GUG 4261 A-)UUUGUC- -UGG(UU-AA UU)CCGUUA- AC-GAACGAG ACCUU-AA|- ---------- 4321 ---------- ---[ccu-gc uaaaua---- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---ggaucu- -gagaau--a 4441 --aacu---- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- -uuauguu-- gucuca-g-- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ----caucgc u--------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------u cuuagagg]- --|------- ---------- GACU-UUG-C -G-G(----- 5041 -uuauaaa)U CGCA-A-GGA AGUU-UAAGG CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UG A|UGCC|CUU 5221 A-G-A-UGUC CUGG-GCUGC A-CGCGCGCU ACACU--G-A UGCAU----- ---------- 5281 ---------- -----[ucau cgaguau--- ---------- ---------- ---------- 5341 ---------- ---------- ---------- ---------- ---------- ---------- 5401 --auccu-ug gcc(gaga-) ggcuu----g gguaaucuuu ---agu]--- ---------- 5461 -------AUG CAU-C-G--- UGAU-G-GGG AUUGAUUAU( UGCAAUUA)U UAAUCAUG-A 5521 ACGAGG-AAU G--CCUAGUA GA-CGC-GAG (-UCAUCAG- )CUCGU-G-U -CGAUUACG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUCC-U-A CC-GAN--CG AG-UGAUcc- 5641 ggu-gaau-- uau-ucgga- cugu-ggug- aauc-uaa-- ---------- ---------- 5701 -------(uu cg----)--- ---------- ---------- ---------- --uu-aga-- 5761 uacgcc-aug -gaaa-|guu -uugugaacc uu-AUC-A-C UUAA-AGGAA GGAGAA--G- 5821 UCGUAACAAG GU-------- -----U-U-C CGUAGG(UGA A)CCUGCAGA AGGAUC~~~~ 5881 ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS T.annulata 5903 bp RNA RNA 11-JAN-191 DEFINITION Theileria annulata. ACCESSION No information KEYWORDS No information. SOURCE Theileria annulata. ORGANISM Theileria annulata. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: M64243 M34845 LOCUS THERR16S 1744 bp ds-DNA INV 18-APR-1991 DEFINITION Theileria annulata 16S-like ribosomal RNA (16S rRNA) gene sequence. ACCESSION M64243 M34845 KEYWORDS 16S-like ribosomal RNA; small subunit ribosomal RNA. SOURCE Theileria annulata DNA. ORGANISM Theileria annulata Eukaryota; Animalia; Protozoa; Microspora; Microsporea; Piroplasmia; Piroplasmida; Theileriidae. REFERENCE 1 (bases 1 to 1744) AUTHORS Gajadhar,A.A., Marquardt,W.C., Hall,R., Gunderson,J., Ariztia-Carmona,E.V. and Sogin,M.L. TITLE Ribosomal RNA sequences of Sarcocystis muris, Theileria annulata and Crypthecodinium cohnii reveal evolutionary relationships among apicomplexans, dinoflagellates, and ciliates JOURNAL Mol. Biochem. Parasitol. 45, 147-154 (1991) STANDARD simple staff_entry FEATURES Location/Qualifiers rRNA 1..1744 /product="16S-like ribosomal RNA" /gene="16S rRNA" BASE COUNT 459 a 330 c 456 g 498 t 1 others ORIGIN BASE COUNT 459 a 330 c 456 g 498 t 4160 others ORIGIN 1 |~~~~~~~~~ ~~~~~AACCU GGU(UGA)UC CU|GCCAGU- A-GUCA-UAU --GCUUGUCU 61 UAAA|-GAUU AA-GCCAUGC A-UGUCU-AA GU|------- |--------- ----[----- 121 ---------- --------au aagcuuuu-- ---------- -auau-ggu- gaa]------ 181 -----|---A CU|G-CGAA- UGGCU-CAUU ACAA-cagu- uau-aguu-- ----uauuug 241 augu<----- ---------- ---------- ---------- ---------- ---ucguuuc 301 u>ACAUGG-A UAACCGUGC( -U-AAUU)GU AGGGC-UAA- UACAUG---- ---------- 361 ---------- ---------- ---------- -- -guaucauuc -aa|guuucu ga|--CCU-A UCA--GCUUU G-GACGGUA- 1141 GG(-GUAUUG G)CCU-ACCG G-|GGCAA-C GAC|GGGU-A A-CGGG|GAA -U-(UAGG-) 1201 GUU-CGAUU- CCG|GAGAGG G-AGCC(U-G AGAAAC)GGC UACC-ACAUC (UAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GC- AAAUU-ACCC -AAUCCU-G( ---aca--)C 1321 AGGG-A-GGU -|A|GUGACA AGAA-AU--- ---------- ---------- ---------- 1381 -----|---- ---------- ---------- ---------- ---------- ---------- 1441 --------AA CAAUACGGG- -GCU-(---- ---uaa-)-A GU-CU-UGUA A-UUGGAAU- 1501 ------GAUG ----GGAAUU -UAAA--CCU C-----UU-C C-AGA-GUAU C---->AAUU 1561 GGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCCAA 1621 U-AGCGUA|U AUUAA--AAU UGUUG-CAG| UUA--AAAAG CUCGUAGUUG |--------- 1681 ---------- ---------- ---------- ---------- ---------- -|-------< 1741 aauuucugcu g-cauu-gcu ----ug--u- gu-cccucug gggucu-gug ---------- 1801 ---------- ------c-a- uguggc-u-- -uuuuucgga cggagu---- ---------- 1861 ---------- ---------- ---------u ucuuugucug aau------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- --GUUUACUU UG-AGAA--A 2461 AUUAGAGUGC UC-AA-AG-C AGGCuuuc-- ---------- ---------- ---------- 2521 ---------- GCCU-U--GA AUAGUU-UAG CAUGGAA|UA -AUAAAG-UA -GGACuUUGG 2581 uu-------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- --CU|--auu 2821 -uu-guuggu -uu-ua---- --gg----ua CCA-AA-GUA A--UGGUUAA UA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGAA|CAGU ---------- 3001 --UGGGGGCA UU|--CGUAU UUAACUG-UC -AGAG(GU-G ArA---)UUC U-UAGA-U-U 3061 UGUUA-AAG- A-CGAACU-A CUGC(-GAAA )--GC|A--- UUUGCC-AA| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUG ---UUUUCAU -UAA-U|CA- A-GAACGAAA 3301 GUUAGGGGA- UCGAAGACG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CGUAG|UCC UA--ACC-AU AAACUAUGCC GAC|UA|--- 3421 --gagau-ug gag-g-u--c gucag(---u uuuua----) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ----cgac-u c-cu-uca-g -c-acCuu-- ---------- ----gaGA(- 3661 GAAA-)UCa- -AAGUC-uuu gGGU|-U|C- UGGGGGGAGU AU--GG-UC( --GCAA-)GG 3721 CUG-AAACUU -AAAG--GAA -UUG|AC-GG -AA-GGGCA- -CCAC-CAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --C-GU|-GG 4021 AGC-UGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--GAA ACUCACCAGG UC[cag-aca 4081 aagg-aagga uu-----gac aga(uugaua g-c)------ ucuuu----- cuu-gauu-c 4141 uuuggg---- -]-------- |--------- ---------- ---------- ---------- 4201 ---------- ---|UG-GU- GGU-G-CAUG |GCC|GU-UC UUA|GUUGG- U|GGA(-GUG 4261 A-)UUUGUC- -UGG(UU-AA UU)CCGUUA- AC-GAACGAG ACCUU-AA|- ---------- 4321 ---------- ---[CCU-GC UAAAUAGggu a--cgggaau aagu-----u ucu------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- --------ac ugucccgu-- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ----uaucg- CU-------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------U CUUAGAGG]- --|------- ---------- GACU-UUG-C -G-G(----- 5041 -uuauaaa)U CGCA-A-GGA AGUU-UAAGG CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UG A|UGCC|CUU 5221 A-G-A-UGUC CUGG-GCUGC A-CGCGCGCU ACACU--G-A UGCGU----- ---------- 5281 ---------- -----[ucau cgaguuu--- ---------- ---------- ---------- 5341 ---------- ---------- ---------- ---------- ---------- ---------- 5401 --auccu-ug gcc(gaga-) ggccu----g gguaaucuuu ---agu]--- ---------- 5461 -------ACG CAU-C-G--- UGAU-G-GGG AUCGAUUAU( UGCAAUUG)U UAAUCGUG-A 5521 ACGAGG-AAU G--CCUAGUA UG-CGC-AAG (-UCAUCAG- )CUUGU-G-C -AGAUUACG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUCC-U-A CC-GAU--CG AG-UGAUcc- 5641 ggu-gaau-- uau-ucgga- ccgu-gaug- uucc-c---- ---------- ---------- 5701 -------(gu ca----)--- ---------- ---------- ---------- -----ggg-- 5761 aacguc-uag -ggaa-|guu -uugugaacc uu-AUC-A-C UUAA-AGGAA GG-AGAA-G- 5821 UCGUAACAAG GU-------- -----U-U-C CGUAGG(UGA A)CCUGCAGA AGGAUCA--- 5881 --AGC~~~~~ ~~~~~~~~|| ||| // LOCUS T.buffeli 5903 bp RNA RNA 11-JAN-191 DEFINITION Theileria buffeli. ACCESSION No information KEYWORDS No information. SOURCE Theileria buffeli. ORGANISM Theileria buffeli. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: Z15106 ID TB18SRRN standard; DNA; INV; 1740 BP. XX AC Z15106; XX DT 14-SEP-1992 (Rel. 33, Created) DT 14-SEP-1992 (Rel. 33, Last updated, Version 1) XX DE T.buffeli gene encoding 18S ribosomal RNA XX KW 18S ribosomal RNA; ribosomal RNA. XX OS Theileria buffeli OC Eukaryota; Animalia; Protozoa; Microspora; Microsporea; OC Piroplasmia; Piroplasmida; Theileriidae. XX RN [1] RP 1-1740 RA Allsopp M.T., Cavalier-Smith T., de Waal T., Allsopp B.A.; RT "Origin of Theileria from Nicollia and a split from Babesia very RT early in piroplasm evolution."; RL Unpublished. XX RN [2] RP 1-1740 RA Allsopp B.A.; RT ; RL Submitted (14-SEP-1992) on tape to the EMBL Data Library by: RL Allsopp B. A., Onderstepoort Veterinary Institute, Molecular RL Biology, Onderstepoort, South Africa, 0110 XX CC *source: stage=Piroplasm; CC *source: tissue=Host blood (bovine); CC *source: isolate=Marula; XX FH Key Location/Qualifiers FH FT rRNA 1..1740 FT /product="18S ribosomal RNA" /citation= ([1]) XX SQ Sequence 1740 BP; 457 A; 324 C; 445 G; 514 T; 0 other; BASE COUNT 457 a 324 c 445 g 514 t 4163 others ORIGIN 1 |~~~~~~~~~ ~~~~~AACCU GGU(UGA)UC CU|GCCAGU- A-GUCA-UAU --GCUUGUCU 61 UAAA|-GAUU AA-GCCAUGC A-UGUCU-AA GU|------- |--------- ----[----- 121 ---------- --------au aagcuuuu-- ---------- -auau-ggu- gaa]------ 181 -----|---A CU|G-CGAA- UGGCU-CAUU AUAA-cagu- uau-aguu-- ----uauuug 241 augu<----- ---------- ---------- ---------- ---------- ---ucguuuu 301 u>ACAUGG-A UAACCGUGC( -U-AAUU)GU AGGGC-UAA- UACAUG---- ---------- 361 ---------- ---------- ---------- -- -guaucauuc -aa|guuucu ga|--CCU-A UCA--GCUUU G-GACGGUA- 1141 GG(-GUAUUG G)CCU-ACCG G-|GGCAG-C GAC|GGGU-A A-CGGG|GAA -U-(UAGG-) 1201 GUU-CGAUU- CCG|GAGAGG G-AGCC(U-G AGAAAC)GGC UACC-ACAUC (UAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GC- AAAUU-ACCC -AAUCCU-G( ---aca--)C 1321 AGGG-A-GGU -|A|GUGACA AGAA-AU--- ---------- ---------- ---------- 1381 -----|---- ---------- ---------- ---------- ---------- ---------- 1441 --------AA CAAUACGGG- -GCU-(---- ---uaa-)-U GU-CU-UGUA A-UUGGAAU- 1501 ------GAUG ----GGAAUU -UAAA--CCU C-----UU-C C-AGA-GUAU C---->AAUU 1561 GGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCCAA 1621 U-AGCGUA|U AUUAA--AAU UGUUG-CAG| UUA--AAAAG CUCGUAGUUG |--------- 1681 ---------- ---------- ---------- ---------- ---------- -|-------< 1741 aauuucugcu g-cauuucau uucucuuucu gaguuuguuu uugcgg-cuu auuucgguuu 1801 ga-uu---uu uu-cuuu-cc ggau------ ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- --GAUUACUU UG-AGAA--A 2461 AUUAGAGUGC UC-AA-AG-C AGGCuuuu-- ---------- ---------- ---------- 2521 ---------- GCCU-U--GA AUAGUU-UAG CAUGGAA|UA -AUAAAG-UA -GGACuUUGG 2581 uu-------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ---c|-uauu 2821 -uu-guuggu -uu-ua---- --gg----ua CCA-AA-GUA A--UGGUUAA UA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGAA|CAGU ---------- 3001 --UGGGGGCA UU|--CGUAU UUAACUG-UC -AGAG(GU-G AAA---)UUC U-UAGA-U-U 3061 UGUUA-AAG- A-CGAACU-A CUGC(-GAAA )--GC|A--- UUUGCC-AA| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUG ---UUUUCAU -UAA-U|CA- A-GAACGAAA 3301 GUUAGGGGA- UCGAAGACG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CGUAG|UCC UA--ACC-AU AAACUAUGCC GAC|UA|--- 3421 --gagau-ug gag-g-u--c gucag(---u uuuua----) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ----cgac-u c-cu-uca-g -c-acCuu-- ---------- ----gaGA(- 3661 GAAA-)UCa- -AAGUC-uuu gGGU|-U|C- UGGGGGGAGU AU--GG-UC( --GCAA-)GG 3721 CUG-AAACUU -AAAG--GAA -UUG|AC-GG -AA-GGGCA- -CCAC-CAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --C-GU|-GG 4021 AGCCUGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--GAA ACUCACCAGG UC[cag-aca 4081 aagg-aagga uu-----gac aga(uugaua g-c)------ ucuuu----- cuu-gauu-c 4141 uuuggg---- -]-------- |--------- ---------- ---------- ---------- 4201 ---------- ---|UG-GU- GGU-G-CAUG |GCC|GU-UC UUA|GUUGG- U|GGA(-GUG 4261 A-)UUUGUC- -UGG(UU-AA UU)CCGUUA- AC-GAACGAG ACCUU-AA|- ---------- 4321 ---------- ---[CCU-GC UAAAUAGgau g--cgggaau agac-----u uuu------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- --------gu ugucccgu-- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ----uaucg- CU-------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------U CUUAGAGG]- --|------- ---------- GACU-UUG-C -G-G(----- 5041 -uuauaaa)U CGCA-A-GGA AGUU-UAAGG CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UG A|UGCC|CUU 5221 A-G-A-UGUC CUGG-GCCGC A-CGCGCGCU ACACU--G-A UGCGU----- ---------- 5281 ---------- -----[ucau cgaguuu--- ---------- ---------- ---------- 5341 ---------- ---------- ---------- ---------- ---------- ---------- 5401 --auccu-ug gcc(gaga-) ggccc----g gguaaucuuu ---agu]--- ---------- 5461 -------ACG CAU-C-G--- UGAU-G-GGG AUCGAUUAU( UGCAAUUA)U UAAUCGUG-A 5521 ACGAGG-AAU G--CCUAGUA UG-CGC-AAG (-UCAUCAG- )CUUGU-G-C -AGAUUACG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUCC-U-A CC-GAU--CG AG-UGAUcc- 5641 ggu-gaau-- uau-ucgga- ccgu-gaug- uucc-c---- ---------- ---------- 5701 -------(gu ua----)--- ---------- ---------- ---------- -----ggg-- 5761 aacguc-uag -ggaa-|guu -uugugaacc uu-AUC-A-C UUAA-AGGAA GG-AGAA-G- 5821 UCGUAACAAG GU-------- -----U-U-C CGUAGG(UGA A)CCUGCAGA AGGAUC~~~~ 5881 ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS T.parva.1 5903 bp RNA RNA 11-JAN-191 DEFINITION Theileria parva. ACCESSION No information KEYWORDS No information. SOURCE Theileria parva. ORGANISM Theileria parva. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: L02366 LOCUS THE18SRRNA 1742 bp ds-DNA INV 19-SEP-1992 DEFINITION Theileria parva 18S ribosomal RNA (18S rRNA) gene. ACCESSION L02366 KEYWORDS 18S ribosomal RNA; small subunit ribosomal RNA. SOURCE Theileria parva piroplasm DNA. ORGANISM Theileria parva Eukaryota; Animalia; Protozoa; Microspora; Microsporea; Piroplasmia; Piroplasmida; Theileriidae. REFERENCE 1 (bases 1 to 1742) AUTHORS Allsopp,B.A., Baylis,H.A., Allsopp,M.T., Cavalier-Smith,T., Bishop,R.P., Carrington,M., Sohanpal,B. and Spooner,P. TITLE Discrimination between six species of Theileria by oligonucleotide probes which detect small subunit ribosomal RNA sequences JOURNAL Unpublished (1992) STANDARD full staff_review FEATURES Location/Qualifiers rRNA 1..1742 /standard_name="small subunit (18S) ribosomal RNA" /product="18S ribosomal RNA" /gene="18S rRNA" /note="putative" /citation=[1] BASE COUNT 459 a 334 c 458 g 491 t ORIGIN BASE COUNT 459 a 334 c 458 g 491 t 4161 others ORIGIN 1 |~~~~~~~~~ ~~~~~AACCU GGU(UGA)UC CU|GCCAGU- A-GUCA-UAU --GCUUGUCU 61 UAAA|-GAUU AA-GCCAUGC A-UGUCU-AA GU|------- |--------- ----[----- 121 ---------- --------au aagcuuuu-- ---------- -auau-ggu- gaa]------ 181 -----|---A CU|G-CGAA- UGGCU-CAUU ACAA-cagu- uau-aguu-- ----uauuug 241 augu<----- ---------- ---------- ---------- ---------- ---ucguuuu 301 u>ACAUGG-A UAACCGUGC( -U-AAUU)GU AGGGC-UAA- UACAUG---- ---------- 361 ---------- ---------- ---------- -- -guaucauuc -aa|guuucu ga|--CCU-A UCA--GCUUU G-GACGGUA- 1141 GG(-GUAUUG G)CCU-ACCG G-|GGCAA-C GAC|GGGU-A A-CGGG|GAA -U-(UAGG-) 1201 GUU-CGAUU- CCG|GAGAGG G-AGCC(U-G AGAAAC)GGC UACC-ACAUC (UAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GC- AAAUU-ACCC -AAUCCU-G( ---aca--)C 1321 AGGG-A-GGU -|A|GUGACA AGAA-AU--- ---------- ---------- ---------- 1381 -----|---- ---------- ---------- ---------- ---------- ---------- 1441 --------AA CAAUACGGG- -GCU-(---- ---uaa-)-A GU-CU-UGUA A-UUGGAAU- 1501 ------GAUG ----GGAAUU -UAAA--CCU C-----UU-C C-AGA-GUAU C---->AAUU 1561 GGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCCAA 1621 U-AGCGUA|U AUUAA--AAU UGUUG-CAG| UUA--AAAAG CUCGUAGUUG |--------- 1681 ---------- ---------- ---------- ---------- ---------- -|-------< 1741 aauuucugcu g-cauc-gcu ----ug--u- gu-cccuucg gggucu-cug ---------- 1801 ---------- ------c-a- uguggc-u-- -uauuucgga cggagu---- ---------- 1861 ---------- ---------- --------uc gcuuugucug gau------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- --GUUUACUU UG-AGAA--A 2461 AUUAGAGUGC UC-AA-AG-C AGGCuuuu-- ---------- ---------- ---------- 2521 ---------- GCCU-U--GA AUAGUU-UAG CAUGGAA|UA -AUAAAG-UA -GGACuUUGG 2581 uu-------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- --CU|--auu 2821 -uu-guuggu -uu-ua---- --gg----ua CCA-AA-GUA A--UGGUUAA UA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGAA|CAGU ---------- 3001 --UGGGGGCA UU|--CGUAU UUAACUG-UC -AGAG(GU-G AAA---)UUC U-UAGA-U-U 3061 UGUUA-AAG- A-CGAACU-A CUGC(-GAAA )--GC|A--- UUUGCC-AA| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUG ---UUUUCAU -UAA-U|CA- A-GAACGAAA 3301 GUUAGGGGA- UCGAAGACG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CGUAG|UCC UA--ACC-AU AAACAAUGCC GAC|UA|--- 3421 --gagau-ug gag-g-u--c gucag(---u uuuua----) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ----cgac-u c-cu-uca-g -c-acCuu-- ---------- ----gaGA(- 3661 GAAA-)UCa- -AAGUC-uuu gGGU|-U|C- UGGGGGGAGU AU--GG-UC( --GCAA-)GG 3721 CUG-AAACUU -AAAG--GAA -UUG|AC-GG -AA-GGGCA- -CCAC-CAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --C-GU|-GG 4021 AGCCUGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--GAA ACUCACCAGG UC[cag-aca 4081 aagg-aagga uu-----gac aga(uugaua g-c)------ ucuuu----- cuu-gauu-c 4141 uuuggg---- -]-------- |--------- ---------- ---------- ---------- 4201 ---------- ---|UG-GU- GGU-G-CAUG |GCC|GU-UC UUA|GUUGG- U|GGA(-GUG 4261 A-)UUUGUC- -UGG(UU-AA UU)CCGUUA- AC-GAACGAG ACCUU-AA|- ---------- 4321 ---------- ---[CCU-GC UAAAUAGggu a--cgggaau aagc-----u cuc------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- --------gc ugucccgu-- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ----caucg- CU-------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------U CUUAGAGG]- --|------- ---------- GACU-UUG-C -G-G(----- 5041 -uuauaaa)U CGCA-A-GGA AGUU-UAAGG CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UG A|UGCC|CUU 5221 A-G-A-UGUC CUGG-GCUGC A-CGCGCGCU ACACU--G-A UGCGU----- ---------- 5281 ---------- -----[ucau cgaguuu--- ---------- ---------- ---------- 5341 ---------- ---------- ---------- ---------- ---------- ---------- 5401 --auccu-ug gcc(gaga-) ggccc----g gguaaucuuu ---agu]--- ---------- 5461 -------ACG CAU-C-G--- UGAU-G-GGG AUCGAUUAU( UGCAAUUG)U UAAUCGUG-A 5521 ACGAGG-AAU G--CCUAGUA UG-CGC-AAG (-UCAUCAG- )CUUGU-G-C -AGAUUACG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUCC-U-A CC-GAU--CG AG-UGAUcc- 5641 ggu-gaau-- uau-ucgga- ccgu-gaug- uucc-c---- ---------- ---------- 5701 -------(ga ca----)--- ---------- ---------- ---------- -----ggg-- 5761 aacguc-uag -ggaa-|guu -uugugaacc uu-AUC-A-C UUAA-AGGAA GG-AGAA-G- 5821 UCGUAACAAG GU-------- -----U-U-C CGUAGG(UGA A)CCUGCAGA AGGAUC~~~~ 5881 ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS T.parva.2 5903 bp RNA RNA 11-JAN-191 DEFINITION Theileria parva (clone pTpmr5.7). ACCESSION No information KEYWORDS No information. SOURCE Theileria parva (clone pTpmr5.7). ORGANISM Theileria parva (clone pTpmr5.7). REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: L28999 LOCUS THERGD 1805 bp ds-DNA INV 23-FEB-1994 DEFINITION Theileria parva (clone pTpmr5.7) 16S ribosmal RNA (16S rRNA) gene, 3' end. ACCESSION L28999 KEYWORDS 16S ribosomal RNA. SOURCE Theileria parva (individual_isolate Muguga, sub_species parva) (library: lambda gt11) DNA. ORGANISM Theileria parva Eukaryota; Animalia; Protozoa; Apicomplexa; Sporozoasida; Coccidiasina; Piroplasmida; Theileriidae. REFERENCE 1 (bases 1 to 1805) AUTHORS Kibe,M.M., Ole-Moiyoi,O.K., Nene,V.V., Khan,B.B., Allsopp,B.A., Collins,N.E., Morzaria,S.P., Gobright,E.I. and Bishop,R.P. TITLE Organization of Theileria parva ribosomal RNA genes: Evidence for two polymorphic units JOURNAL Unpublished (1994) STANDARD full automatic COMMENT NCBI gi: 456437 FEATURES Location/Qualifiers rRNA <1..1670 /function="translation of mRNA" /standard_name="SSU rRNA" /product="16S ribosomal RNA" /gene="16S rRNA" /note="putative" source 1..1805 /organism="Theileria parva" /isolate="Muguga" /sub_species="parva" /germline /sequenced_mol="DNA" /tissue_lib="lambda gt11" BASE COUNT 476 a 350 c 466 g 513 t ORIGIN BASE COUNT 440 a 321 c 444 g 469 t 4229 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~(~~~)~~ ~~|~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~|~~~~~~~ |~~~~~~~~~ ~~~~[~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~uu-- ---------- -auau-ggu- gaa]------ 181 -----|---A CU|G-CGAA- UGGCU-CAUU ACAA-cagu- uau-aguu-- ----uauuug 241 augu<----- ---------- ---------- ---------- ---------- ---ucguuuu 301 u>ACAUGG-A UAACCGUGC( -U-AAUU)GU AGGGC-UAA- UACAUG---- ---------- 361 ---------- ---------- ---------- -- -guaucauuc -aa|guuucu ga|--CCU-A UCA--GCUUU G-GACGGUA- 1141 GG(-GUAUUG G)CCU-ACCG G-|GGCAA-C GAC|GGGU-A A-CGGG|GAA -U-(UAGG-) 1201 GUU-CGAUU- CCG|GAGAGG G-AGCC(U-G AGAAAC)GGC UACC-ACAUC (UAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GC- AAAUU-ACCC -AAUCCU-G( ---aca--)C 1321 AGGG-A-GGU -|A|GUGACA AGAA-AU--- ---------- ---------- ---------- 1381 -----|---- ---------- ---------- ---------- ---------- ---------- 1441 --------AA CAAUACGGG- -GCU-(---- ---uaa-)-A GU-CU-UGUA A-UUGGAAU- 1501 ------GAUG ----GGAAUU -UAAA--CCU C-----UU-C C-AGA-GUAU C---->AAUU 1561 GGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCCAA 1621 U-AGCGUA|U AUUAA--AAU UGUUG-CAG| UUA--AAAAG CUCGUAGUUG |--------- 1681 ---------- ---------- ---------- ---------- ---------- -|-------< 1741 aauuucugcu g-cauc-gcu ----ug--ug u--cccuucg gggucu-cug ---------- 1801 ---------- ------c-a- uguggc-u-- -uauuucgga cggagu---- ---------- 1861 ---------- ---------- --------uc gcuuugucug gau------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- --GUUUACUU UG-AGAA--A 2461 AUUAGAGUGC UC-AA-AG-C AGGCuuuu-- ---------- ---------- ---------- 2521 ---------- GCCU-U--GA AUAGUU-UAG CAUGGAA|UA -AUAAAG-UA -GGACuUUGG 2581 uu-------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- --cu|--auu 2821 -uu-guuggu -uu-ua---- --gg----ua CCA-AA-GUA A--UGGUUAA UA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGAA|CAGU ---------- 3001 --UGGGGGCA UU|--CGUAU UUAACUG-UC -AGAG(GU-G AAA---)UUC U-UAGA-U-U 3061 UGUUA-AAG- A-CGAACU-A CUGC(-GAAA )--GC|A--- UUUGCC-AA| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUG ---UUUUCAU -UAA-U|CA- A-GAACGAAA 3301 GUUAGGGGA- UCGAAGACG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CGUAG|UCC UA--ACC-AU AAACAAUGCC GAC|UA|--- 3421 --gagau-ug gag-g-u--c gucag(---u uuuua----) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ----cgac-u c-cu-uca-g -c-acCuu-- ---------- ----gaGA(- 3661 GAAA-)UCa- -AAGUC-uuu gGGU|-U|C- UGGGGGGAGU AU--GG-UC( --GCAA-)GG 3721 CUG-AAACUU -AAAG--GAA -UUG|AC-GG -AA-GGGCA- -CCAC-CAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --C-GU|-GG 4021 AGCCUGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--GAA ACUCACCAGG UC[cag-aca 4081 aagg-aagga uu-----gac aga(uugaua g-c)------ ucuuu----- cuu-gauu-c 4141 uuuggg---- -]-------- |--------- ---------- ---------- ---------- 4201 ---------- ---|UG-GU- GGU-G-CAUG |GCC|GU-UC UUA|GUUGG- U|GGA(-GUG 4261 A-)UUUGUC- -UGG(UU-AA UU)CCGUUA- AC-GAACGAG ACCUU-AA|- ---------- 4321 ---------- ---[CCU-GC UAAAUAGggu a--cgggaau aagc-----u cuc------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- --------gc ugucccgu-- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ----caucg- CU-------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------U CUUAGAGG]- --|------- ---------- GACU-UUG-C -G-G(----- 5041 -uuauaaa)U CGCA-A-GGA AGUU-UAAGG CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UG A|UGCC|CUU 5221 A-G-A-UGUC CUGG-GCUGC A-CGCGCGCU ACACU--G-A UGCGU----- ---------- 5281 ---------- -----[ucau cgaguuu--- ---------- ---------- ---------- 5341 ---------- ---------- ---------- ---------- ---------- ---------- 5401 --auccu-ug gcc(gaga-) ggccc----g gguaaucuuu ---agu]--- ---------- 5461 -------ACG CAU-C-G--- UGAU-G-GGG AUCGAUUAU( UGCAAUUG)U UAAUCGUG-A 5521 ACGAGG-AAU G--CCUAGUA UG-CGC-AAG (-UCAUCAG- )CUUGU-G-C -AGAUUACG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUCC-U-A CC-GAU--CG AG-UGAUcc- 5641 ggu-gaau-- uau-ucgga- ccgu-gaug- uucc-c---- ---------- ---------- 5701 -------(ga ca----)--- ---------- ---------- ---------- -----ggg-- 5761 aacguc-uag -ggaa-|guu -uugugaacc uu-AUC-A-C UUAA-AGGAA GG-AGAA-G- 5821 UCGUAACAAG GU-------- -----U-U-C CGUAGG(UGA A)CCUGCAGA AGGAUCA--- 5881 --UUC----- -------~|| ||| // LOCUS T.taurotra 5903 bp RNA RNA 11-JAN-191 DEFINITION Theileria taurotragi. ACCESSION No information KEYWORDS No information. SOURCE Theileria taurotragi. ORGANISM Theileria taurotragi. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: L19082 LOCUS THERR18SA 1737 bp ss-rRNA RNA 03-JUN-1993 DEFINITION Theileria taurotragi 18S ribosomal RNA. ACCESSION L19082 KEYWORDS 18S ribosomal RNA; ribosomal RNA small subunit. SOURCE Theileria taurotragi (strain Vaalwater) piroplasm rRNA. ORGANISM Theileria taurotragi Eukaryota; Animalia; Protozoa; Apicomplexa; Sporozoasida; Coccidiasina; Piroplasmida; Theileriidae. REFERENCE 1 (bases 1 to 1737) AUTHORS Allsopp,M.T., Cavalier-Smith,T., de Waal,T. and Allsopp,B.A. TITLE Phylogeny and evolution of the piroplasms JOURNAL Parasitology (1993) In press STANDARD full automatic FEATURES Location/Qualifiers rRNA 1..1737 /product="18S ribosomal RNA" /gene="18S rRNA" /label=srRNA /note="putative" source 1..1737 /organism="Theileria taurotragi" /strain="Vaalwater" /dev_stage="piroplasm" /sequenced_mol="rRNA" BASE COUNT 452 a 337 c 464 g 484 t ORIGIN BASE COUNT 452 a 337 c 464 g 484 t 4166 others ORIGIN 1 |~~~~~~~~~ ~~~~~AACCU GGU(UGA)UC CU|GCCAGU- A-GUCA-UAU --GCUUGUCU 61 UAAA|-GAUU AA-GCCAUGC A-UGUCU-AA GU|------- |--------- ----[----- 121 ---------- --------au aagcuuuu-- ---------- -auau-ggu- gaa]------ 181 -----|---A CU|G-CGAA- UGGCU-CAUU ACAA-cagu- uau-aguu-- ----uauuug 241 augu<----- ---------- ---------- ---------- ---------- ---ucguuuu 301 u>ACAUGG-A UAACCGUGC( -U-AAUU)GU AGGGC-UAA- UACAUG---- ---------- 361 ---------- ---------- ---------- -- -guaucauuc -aa|guuucu ga|--CCU-A UCA--GCUUU G-GACGGUA- 1141 GG(-GUAUUG G)CCU-ACCG G-|GGCAG-C GAC|GGGU-A A-CGGG|GAA -U-(UAGG-) 1201 GUU-CGAUU- CCG|GAGAGG G-AGCC(U-G AGAAAC)GGC UACC-ACAUC (UAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GC- AAAUU-ACCC -AAUCCU-G( ---aca--)C 1321 AGGG-A-GGU -|A|GUGACA AGAA-AU--- ---------- ---------- ---------- 1381 -----|---- ---------- ---------- ---------- ---------- ---------- 1441 --------AA CAAUACGGG- -GCU-(---- ---uaa-)-A GU-CU-UGUA A-UUGGAAU- 1501 ------GAUG ----GGAAUU -UAAA--CCU C-----UU-C C-AGA-GUAU C---->AAUU 1561 GGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCCAA 1621 U-AGCGUA|U AUUAA--AAU UGUUG-CAG| UUA--AAAAG CUCGUAGUUG |--------- 1681 ---------- ---------- ---------- ---------- ---------- -|-------< 1741 aauuucugcu g-cauu-gu- --------cg ag-ucccucc gggguc-uug ---------- 1801 ---------- -----gc-a- cguggc-u-- -uuuuucgga cgguuc-gc- ---------- 1861 ---------- ---------- ---------- ----ugucug gau------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- --GUUUACUU UG-AGAA--A 2461 AUUAGAGUGC UC-AA-AG-C AGGCuuuu-- ---------- ---------- ---------- 2521 ---------- GCCU-U--GA AUAGUU-UAG CAUGGAA|UA -AUAAAG-UA -GGACuUUGG 2581 uu-------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- --CU|--auu 2821 -uu-guuggu -uu-ua---- --gg----ua CCA-AA-GUA A--UGGUUAA UA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGAA|CAGU ---------- 3001 --UGGGGGCA UU|--CGUAU UUAACUG-UC -AGAG(GU-G AAA---)UUC U-UAGA-U-U 3061 UGUUA-AAG- A-CGAACU-A CUGC(-GAAA )--GC|A--- UUUGCC-AA| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUG ---UUUUCAU -UAA-U|CA- A-GAACGAAA 3301 GUUAGGGGA- UCGAAGACG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CGUAG|UCC UA--ACC-AU AAACAAUGCC GAC|UA|--- 3421 --gagau-ug gag-g-u--c gucag(---u uuuua----) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ----cgac-u c-cu-uca-g -c-acCuu-- ---------- ----gaGA(- 3661 GAAA-)UCa- -AAGUC-uuu gGGU|-U|C- UGGGGGGAGU AU--GG-UC( --GCAA-)GG 3721 CUG-AAACUU -AAAG--GAA -UUG|AC-GG -AA-GGGCA- -CCAC-CAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --C-GU|-GG 4021 AGCCUGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--GAA ACUCACCAGG UC[cag-aca 4081 aagg-aagga uu-----gac aga(uugaua g-c)------ ucuuu----- cuu-gauu-c 4141 uuuggg---- -]-------- |--------- ---------- ---------- ---------- 4201 ---------- ---|UG-GU- GGU-G-CAUG |GCC|GU-UC UUA|GUUGG- U|GGA(-GUG 4261 A-)UUUGUC- -UGG(UU-AA UU)CCGUUA- AC-GAACGAG ACCUU-AA|- ---------- 4321 ---------- ---[CCU-GC UAAAUAGggu a--cgggagc aaggc----- ucu------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- --------gc cgucccgu-- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ----gaucg- CU-------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------U CUUAGAGG]- --|------- ---------- GACU-UUG-C -G-G(----- 5041 -uuauaaa)U CGCA-A-GGA AGUU-UAAGG CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UG A|UGCC|CUU 5221 A-G-A-UGUC CUGG-GCUGC A-CGCGCGCU ACACU--G-A UGCGU----- ---------- 5281 ---------- -----[ucau cgaguuu--- ---------- ---------- ---------- 5341 ---------- ---------- ---------- ---------- ---------- ---------- 5401 --auccu-ug gcc(gaga-) ggccc----g gguaaucuuu ---agu]--- ---------- 5461 -------ACG CAU-C-G--- UGAU-G-GGG AUCGAUUAU( UGCAAUUG)U UAAUCGUG-A 5521 ACGAGG-AAU G--CCUAGUA UG-CGC-AAG (-UCAUCAG- )CUUGU-G-C -AGAUUACG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUCC-U-A CC-GAU--CG AG-UGAUcc- 5641 ggu-gaau-- uau-ucgga- ccgu-gaug- uucc-c---- ---------- ---------- 5701 -------(gu ca----)--- ---------- ---------- ---------- -----ggg-- 5761 aacguc-uag -ggaa-|guu -uugugaacc uu-AUC-A-C UUAA-AGGAA GG-AGAA-G- 5821 UCGUAACAAG GU-------- -----U-U-C CGUAGG(UGA A)CCUGCAGA AGGAUC~~~~ 5881 ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS Theil.sp 5903 bp RNA RNA 11-JAN-191 DEFINITION Theileria sp.. ACCESSION No information KEYWORDS No information. SOURCE Theileria sp. ORGANISM Theileria sp. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: L19081 LOCUS THERR18S 1746 bp ss-rRNA RNA 03-JUN-1993 DEFINITION Theileria sp. 18S ribosomal RNA. ACCESSION L19081 KEYWORDS 18S ribosomal RNA; ribosomal RNA small subunit. SOURCE Theileria sp. schizont rRNA. ORGANISM Theileria sp. Eukaryota; Animalia; Protozoa; Apicomplexa; Sporozoasida; Coccidiasina; Piroplasmida; Theileriidae. REFERENCE 1 (bases 1 to 1746) AUTHORS Allsopp,M.T., Cavalier-Smith,T., de Waal,T. and Allsopp,B.A. TITLE Phylogeny and evolution of the piroplasms JOURNAL Parasitology (1993) In press STANDARD full automatic FEATURES Location/Qualifiers rRNA 1..1746 /product="18S ribosomal RNA" /gene="18S rRNA" /label=srRNA /note="putative" source 1..1746 /organism="Theileria sp." /dev_stage="schizont" /sequenced_mol="rRNA" BASE COUNT 455 a 337 c 457 g 497 t ORIGIN BASE COUNT 455 a 337 c 457 g 497 t 4157 others ORIGIN 1 |~~~~~~~~~ ~~~~~AACCU GGU(UGA)UC CU|GCCAGU- A-GUCA-UAU --GCUUGUCU 61 UAAA|-GAUU AA-GCCAUGC A-UGUCU-AA GU|------- |--------- ----[----- 121 ---------- --------au aagcuuuu-- ---------- -auau-ggu- gaa]------ 181 -----|---A CU|G-CGAA- UGGCU-CAUU ACAA-cagu- uau-aguu-- ----uauuug 241 augu<----- ---------- ---------- ---------- ---------- ---ucguuuc 301 u>ACAUGG-A UAACCGUGC( -U-AAUU)GU AGGGC-UAA- UACAUG---- ---------- 361 ---------- ---------- ---------- -- -guaucauuc -aa|guuucu ga|--CCU-A UCA--GCUUU G-GACGGUA- 1141 GG(-GUAUUG G)CCU-ACCG G-|GGCAG-C GAC|GGGU-A A-CGGG|GAA -U-(UAGG-) 1201 GUU-CGAUU- CCG|GAGAGG G-AGCC(U-G AGAAAC)GGC UACC-ACAUC (UAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GC- AAAUU-ACCC -AAUCCU-G( ---aca--)C 1321 AGGG-A-GGU -|A|GUGACA AGAA-AU--- ---------- ---------- ---------- 1381 -----|---- ---------- ---------- ---------- ---------- ---------- 1441 --------AA CAAUACGGG- -GCU-(---- ---uaa-)-U GU-CU-UGUA A-UUGGAAU- 1501 ------GAUG ----GGAAUU -UAAA--CCU C-----UU-C C-AGA-GUAU C---->AAUU 1561 GGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCCAA 1621 U-AGCGUA|U AUUAA--AAU UGUUG-CAG| UUA--AAAAG CUCGUAGUUG |--------- 1681 ---------- ---------- ---------- ---------- ---------- -|-------< 1741 aacuucugcu g-cauu-gcc uuuucu--cc uu-gaugagu ugaugc-auu ---------- 1801 ---------- -----gc-g- gcuuau---- ----uucggu cauggu---- ---------- 1861 ---------- ---------- --------uu uccuuguccg gau------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- --GUUUACUU UG-AGAA--A 2461 AUUAGAGUGC UC-AA-AG-C AGGCuuuu-- ---------- ---------- ---------- 2521 ---------- GCCU-U--GA AUAGUU-UAG CAUGGAA|UA -AUAAAG-UA -GGACuUUGG 2581 uu-------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- --CU|--auu 2821 -uu-guuggu -uu-ua---- --ug----ua CCA-AA-GUA A--UGGUUAA UA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGAA|CAGU ---------- 3001 --UGGGGGCA UU|--CGUAU UUAACUG-UC -AGAG(GU-G AAA---)UUC U-UGGA-U-U 3061 UGUUA-AAG- A-CGAACU-A CUGC(-GAAA )--GC|A--- UUUGCC-AA| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUG ---UUUCCAU -UAA-U|CA- A-GAACGAAA 3301 GUUAGGGGA- UCGAAGACG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CGUAG|UCC UA--ACC-AU AAACUAUGCC GAC|UA|--- 3421 --gggau-ua gag-g-u--c gucag(---u uuuua----) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ----cgac-u c-cu-uua-g -c-acCuu-- ---------- ----gaGA(- 3661 GAAA-)UCa- -AAGUC-uuu gGGU|-U|C- UGGGGGGAGU AU--GG-UC( --GCAA-)GG 3721 CUG-AAACUU -AAAG--GAA -UUG|AC-GG -AA-GGGCA- -CCAC-CAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --C-GU|-GG 4021 AGCCUGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--GAA ACUCACCAGG UC[cag-aca 4081 aagg-aagga uu-----gac aga(uugaua g-c)------ ucuuu----- cuu-gauu-c 4141 uuuggu---- -]-------- |--------- ---------- ---------- ---------- 4201 ---------- ---|UG-GU- GGU-G-CAUG |GCC|GU-UC UUA|GUUGG- U|GGA(-GUG 4261 A-)UUUGUC- -UGG(UU-AA UU)CCGUUA- AC-GAACGAG ACCUU-AA|- ---------- 4321 ---------- ---[CCU-GC UAAAUAGggu g--cgggacg a-ggc----c uuuc------ 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- --------gc cgucccgu-- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ----gaucg- CU-------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------U CUUAGAGG]- --|------- ---------- GACU-UUG-C -G-G(----- 5041 -uuauaaa)U CGCA-A-GGA AGUU-UAAGG CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UG A|UGCC|CUU 5221 A-G-A-UGUC CUGG-GCUGC A-CGCGCGCU ACACU--G-A UGCGU----- ---------- 5281 ---------- -----[ucau cgaguuu--- ---------- ---------- ---------- 5341 ---------- ---------- ---------- ---------- ---------- ---------- 5401 --auccu-ug gcc(gaga-) cggac----g gguaaucuuu ---agu]--- ---------- 5461 -------ACG CAU-C-G--- UGAU-G-GGG AUCGAUUAU( UGCAAUUA)U UAAUCGUG-A 5521 ACGAGG-AAU G--CCUAGUA UG-CGC-AAG (-UCAUCAG- )CUUGU-G-C -AGAUUACG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUCC-U-A CC-GAU--CG AG-UGAUcc- 5641 ggu-gaau-- uau-ucgga- ccgc-gaug- uucc-c---- ---------- ---------- 5701 -------(gu ca----)--- ---------- ---------- ---------- -----ggg-- 5761 aacguc-uag -ggaa-|guu -uugugaacc uu-AUC-A-C UUAA-AGGAA GG-AGAA-G- 5821 UCGUAACAAG GU-------- -----U-U-C CGUAGG(UGA A)CCUGCAGA AGGAUC~~~~ 5881 ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS (4)-Ciliop 5903 bp RNA RNA 13-JAN-1999 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: DIVIDER BASE COUNT 0 a 0 c 0 g 0 t 5903 others ORIGIN 1 |......... .......... .......... .......... .......... .......... 61 .......... .......... .......... .......... .......... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......... .......... .......... .......... 241 .......... .......... .......... .......... .......... .......... 301 .......... .......... .......... .......... .......... .......... 361 .......... .......... .......... .......... .......... .......... 421 .......... .......... .......... .......... .......... .......... 481 .......... .......... .......... .......... .......... .......... 541 .......... .......... .......... .......... .......... .......... 601 .......... .......... .......... .......... .......... .......... 661 .......... .......... .......... .......... .......... .......... 721 .......... .......... .......... .......... .......... .......... 781 .......... .......... .......... .......... .......... .......... 841 .......... .......... .......... .......... .......... .......... 901 .......... .......... .......... .......... .......... .......... 961 .......... .......... .......... .......... .......... .......... 1021 .......... .......... .......... .......... .......... .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .......... .......... .......... .......... .......... 1201 .......... .......... .......... .......... .......... .......... 1261 .......... .......... .......... .......... .......... .......... 1321 .......... .......... .......... .......... .......... .......... 1381 .......... .......... .......... .......... .......... .......... 1441 .......... .......... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .....>.... 1561 .......... .......... .......... .......... .......... ..-|...... 1621 .......... .......... .......... .......... .......... .......... 1681 .......... .......... .......... .......... .......... .......... 1741 .......... .......... .......... .......... .......... .......... 1801 .......... .......... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .......... .......... 1921 .......... .......... .......... .......... .......... .......... 1981 .......... .......... .......... .......... .......... .......... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... .......... .......... .......... .......... .......... 2161 .......... .......... .......... .......... .......... .......... 2221 .......... .......... .......... .......... .......... .......... 2281 .......... .......... .......... .......... .......... .......... 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... .......... 2701 .......... .......... .......... .......... .......... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... .......... 2881 .......... .......... .......... .......... .......... .......... 2941 .......... .......... .......... .......... .......... .......... 3001 .......... .......... .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .......... .......... 3181 .......... .......... .......... .......... .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .......... .......... .......... 3361 .......... .......... .......... .......... .......... .......... 3421 .......... .......... .......... .......... .......... .......... 3481 .......... .......... .......... .......... .......... .......... 3541 .......... .......... .......... .......... .......... .......... 3601 .......... .......... .......... .......... .......... .......... 3661 .......... .......... .......... .......... .......... .......... 3721 .......... .......... .......... .......... .......... .......... 3781 .......... .......... .......... .......... .......... .......... 3841 .......... .......... .......... .......... .......... .......... 3901 .......... .......... .......... .......... .......... .......... 3961 .......... .......... .......... .......... .......... .......... 4021 .......... .......... .......... .......... .......... .......... 4081 .......... .......... .......... .......... .......... .......... 4141 .......... .]........ .......... .......... .......... .......... 4201 .......... .......... .......... .......... .......... .......... 4261 .......... .......... .......... .......... .......... .......... 4321 .......... .......... .......... .......... .......... .......... 4381 .......... .......... .......... .......... .......... .......... 4441 .......... .......... .......... .......... .......... .......... 4501 .......... .......... .......... .......... .......... .......... 4561 .......... .......... .......... .......... .......... .......... 4621 .......... .......... .......... .......... .......... .......... 4681 .......... .......... .......... .......... .......... .......... 4741 .......... .......... .......... .......... .......... .......... 4801 .......... .......... .......... .......... .......... .......... 4861 .......... .......... .......... .......... .......... .......... 4921 .......... .......... .......... .......... .......... .......... 4981 .......... .......... .......... .......... .......... .......... 5041 .......... .......... .......... .......... .......... .......... 5101 .......... .......... .......... .......... .......... .......... 5161 .......... .......... .......... .......... .......... .......... 5221 .......... .......... .......... .......... .......... .......... 5281 .......... .......... .......... .......... .......... .......... 5341 .......... .......... .......... .......... .......... .......... 5401 .......... .......... .......... .......... .......... .......... 5461 .......... .......... .......... .......... .......... .......... 5521 .......... .......... .......... .-........ .......... .......... 5581 .......... .......... .......... .......... .......... .......... 5641 .......... .......... .......... .......... .......... .......... 5701 .......... .......... .......... .......... .......... .......... 5761 .......... .......... .......... .......... .......... .......... 5821 .......... .......... .......... .......... .......... .......... 5881 .......... ........|| ||| // LOCUS B.american 5903 bp RNA RNA 11-JAN-191 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: M97909 LOCUS BJA16SLRNA 1724 bp ds-DNA INV 01-AUG-1992 DEFINITION Blepharisma americanum small subunit ribosomal RNA gene sequence ACCESSION M97909 KEYWORDS 16S-like ribosomal RNA; small subunit ribosomal RNA. SOURCE Blepharisma americanum DNA. ORGANISM Blepharisma americanum Eukaryota; Animalia; Protozoa; Ciliophora; Polyhymenophora; Spirotricha; Heterotrichida; Clevelandellina. REFERENCE 1 (bases 1 to 1724) AUTHORS Greenwood,S.J., Schlegel,M., Sogin,M.L. and Lynn,D.H. TITLE Phylogenetic relationships of Blepharisma americanum and Colpoda inflata within the phylum ciliiophora inferred from complete small subunit rRNA gene sequence JOURNAL J. Protozool. 38, 1-6 (1991) STANDARD simple staff_entry BASE COUNT 465 a 351 c 459 g 447 t 2 others ORIGIN BASE COUNT 465 a 351 c 459 g 447 t 4181 others ORIGIN 1 |--------- -----AACCU GGU(UGA)UC CU|GCCAGU- A-GUCA-UAU --GCUUGUCU 61 CAAA|-GAUU AA-GCCAUGC A-UGUCU-AA GU|------- |-------(- ---)[----- 121 ---------- --------au aagcaa--uu ---------- -au-a-cggc gag]------ 181 -----|---A CU|G-CGAA- UGGCU-CAUU AAAA-cagu- uau-aguu-- ----uauuug 241 cuag<----- ---------- ---------- ---------- ---------- -----acguu 301 u>AUAUGG-A UAACCGUAG( -U-AAUU)CU AGAGC-UAA- UACAUG---- ----(----) 361 ---------- -------(-- --)--|---- -- -gaagcauuc -aa|guuucu gc|--CCU-A UCA--GCUUU C-GAUGGUA- 1141 GU(-GUAUUG G)ACU-ACCA U-|GGCGA-U GAC|GGGU-G A-CGGA|GAA -U-(UAGG-) 1201 GUU-CGAUU- CCG|GAGAGG G-AGCC(U-G AGAAAU)GGC UACC-ACAUC (UAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GC- AAAUU-ACCC -AAUCCU-A( ---acu--)C 1321 AGGG-A-GGU -|A|GUGACA AGAA-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AA CAACGCGGG- ---Gc(---- ---uuu-)gU ---CU-UGCG A-UUGGAAU- 1501 ------GAGU ----UAAGUG -UAAA--agc c-----uu-u --CGA-GGAC C---->CACU 1561 GGAG|GG-CA A-GU-C-UG- U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCCAG 1621 U-AGCGUA|U AUUAA--AGU UGUUG-CAG| UUA--AAAAG CUCGUAGUUG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 aagcucugcg g-ggcg-ggu cgcugg--gc (c--ucg)gu cuggug-acc ---------- 1801 ---------- -----uu-c- cu-cgc-auc -caucu---- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- --------ga gcaacggcuc 2161 cggcauu--- ---------- ---------- ---aacuugu cgcu------ ---------- 2221 ----gucgug aucaggua-- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- --CUUUACCU UG-AGCA--A 2461 AUGAGAGUGU UC-CA-GG-C AGGCuu---- ---------- ---------- ---------- 2521 ---------g gGCC-U--GA AUCGUC-CAG CAUGGAA|UA -AUAGAA-GA -GGA---cug 2581 g-g------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- -cUC|-CAUU 2821 -U--AUUGGU -GU-UA---- -----uggc- gcu--uAGUA A--UGAUUAA UA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGA|UAGU ---------- 3001 --UGGGGGCA UU|--UGUAU UUAAUUG-UC -AGAG(GU-G AAA---)UUC U-AUGA-U-U 3061 UAUUA-AAG- A-CAAACU-U AUGC(-GAAA )--GC|A--- UUUGCC-AA| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUG ---UUUUCAU -UAA-U|CA- A-GAACGAAA 3301 GUUAAGGGA- UCAAAGACG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CGUAG|UCU UA--ACC-AU AAACUAUGCC GAC|UA|--- 3421 --gagau-ug gag-g-u-gc ----(-cauu aaaagua--) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- -------c-u c-cu-uca-g ca-ucuu--- ---------- ----ccGA(- 3661 GAAA-)UCa- -aAGUC-uuu gGGU|-U|C- UGGGGGGAGU AU--GGU-C( --GCAA-)GA 3721 CUG-AAACUU -AAAG--GAA -UUG|AC-GG -AA-GGGCA- -CCAC-CAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --A-GU|-GG 4021 -cauggCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--GAA ACUUACCAGG UC[cag-aca 4081 uggg-aagga uu-----gac aga(uugaua g-c)------ ucuuu----- cuu-gauu-c 4141 uauggg---- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU-G-CAUG |GCC|GU-UC UUA|GUUGG- U|GGA(-GUG 4261 A-)UUUGUC- -UGG(UU-AA UU)CCGAUA- AC-GAACGAG ACCUU-AA|- ---------- 4321 ------(--- --)[CCU-GC UAACUAGUcg u--cucuu-- ---------- --gc-ca--- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- ---------- --aagagu-- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ----c-ggA- CU-------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------U CUUAGAGG]- --|------- ---------- GAcu-uu--g -g-g(----- 5041 --ggcua-)c ucca-a-GGA AGUU-UAAGG CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UG A|NGCC|CU- 5221 U-AGA--NGC CUGG-GCCGC A-CGCGCGCU ACACU--G-A UGCAG----- ---------- 5281 ---(------ ----)[gcag uaagccc--- ---------- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- ---------- ---------- 5401 ---uccg-cg gca(gaaa-) augccc---c gguaac-cuu caaa--]--- ---------- 5461 -------cug cau-c-g--- UGAU-G-GGG AUUGACUCU( UGGAAUUA)U UGGUCAUC-A 5521 ACGAGG-AAU U--CCUAGUA AA-CGC-AAG (-UCAUCAA- )CUUGC-A-U -UGACUACG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUCC-U-A CCgauuucga gu-gauga-- 5641 ggu-gaau-- ccu-ccgga- cugc-acac- ---------- ---------- ---------- 5701 -------(cu c-----)--- ---------- ---------- ---------- ---------- 5761 --gugu-gug -ggaa-|guu -gaguaaacc uu-auc-a-c uuag-AGGAA GG-AGAA-G- 5821 UCGUAACAAG GU-------- -----A-U-C UGUAGG(UGA A)CCUGCAGA AGGAUC---- 5881 ---------- -------~|| ||| // LOCUS C.campylum 5903 bp RNA RNA 11-JAN-191 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: X56532 LOCUS CPDSSRRNA 1754 bp ds-DNA INV 27-AUG-1991 DEFINITION C.campylum small subunit ribosomal RNA gene ACCESSION X56532 KEYWORDS SSU ribosomal RNA; ribosomal RNA; small subunit ribosomal RNA. SOURCE Colpidium campylum DNA. ORGANISM Colpidium campylum Eukaryota; Animalia; Protozoa; Ciliophora; Oligohymenophora; Hymenostomata; Hymenostomatida; Tetrahymenina; Glaucomidae. REFERENCE 1 (bases 1 to 1754) AUTHORS Greenwood,S.J., Sogin,M.L. and Lynn,D.H. TITLE Phylogenetic relationships within the class Oligohymenophorea, phylum Ciliophora, inferred from the complete small subunit ribosomal RNA gene sequences of Colpidium Campylum, Glaucoma chattoni, and Opisthonecta henneguyi JOURNAL J. Mol. Evol. 33, 163-174 (1991) STANDARD full automatic COMMENT *source: is_germline=Y; See also X56531, X56533 From EMBL entry CCSSRRNA; dated 21-AUG-1991. FEATURES Location/Qualifiers misc_feature 1..21 /note="primer" rRNA 22..1729 /product="small subunit ribosomal RNA" misc_feature 1730..1754 /note="primer" BASE COUNT 511 a 324 c 441 g 478 t ORIGIN BASE COUNT 511 a 324 c 441 g 478 t 4149 others ORIGIN 1 |--------- -----AACAU GGU(UGA)UC CU|GCCAGU- U-A-CA-UAU --GCUUGUCU 61 UAAA|-UAUU AA-CCCAUGC A-UGUGC-CA GU|------- |-------(- ---)[----- 121 ---------- ---------u caguau---u ---------- -ga-a-cagc gaa]------ 181 -----|---A CU|G-CGAA- UGGCU-CAUU AAAA-cagu- uau-aguu-- ----uauuug 241 auaa<----- ---------- ---------- ---------- ---------- --uuaaagau 301 u>ACAUGG-A UAACCGAGC( -U-AAUU)GU UGGGC-UAA- UACAUG---- ----(----) 361 ---------- -------(-- --)--|---- -- -aaaucaucu -aa|guuucu gc|--CCU-A UCA--GCUCU C-GAUGGUA- 1141 GU(-GUAUUG G)ACU-ACCA GU|GGCAG-U CAC|GGGU-A A-CGGA|GAA -U-(UAGG-) 1201 GUUCCGAUU- CCG|GAGAAG G-AGCC(U-G AGAAAC)GGC UACU-ACAAC (UACG-)GUU 1261 UGGCAGC-A- ---------| GGG-AA-GA- AAAUU-GGCC -AAUCCU-A( ---auu--)C 1321 AGGG-A-GCC -|A|GUGACA AGAA-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AG CAAACCGGG- --AAA(---- --cucag)UU U--CUACGGU A-UUGAAAU- 1501 ------GAGA ----ACAGUG -UUAA--UCU C-----UU-A G-CGA-GGAA C---->AAUU 1561 GGAG|GG-CA A-GC-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCCAA 1621 U-AGCGUA|U AUUAA--AGU UGUUG-CAG| UUA--AAAAG CUCGUAGUUG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 aacuuc--ug c-ccag-gac uauuuc--ga (u--ucg)uc g-ggua-gug ---------- 1801 ---------- -----cu-g- gg-cau-acg -ucu------ ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- --------gc aagcuaaaau 2161 cggccuu--- ---------- ---------- ---uacuggu ucga------ ---------- 2221 ---cuuagua aguagaca-- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- --UUUUACUG UG-AAAA--A 2461 AUUAGAGUGU UU-CA-GG-C AGGUuu---- ---------- ---------- ---------- 2521 --------ua -gcc-c--gU AUACAU-UAG CAUGGAA|UA -AUGGAA-UA -GGACuGAGU 2581 c--------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ----|-CAUU 2821 -UU-AUUGGU -UC-UU---- --------gg AUU-UA-GUA A--UGAUUAA UA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGA|CAGU ---------- 3001 --UGGGGGCA UU|--AGUAU UUAAUAG-UC -AGAG(GU-G AAA---)UUC U-UGGA-U-U 3061 UAUUA-AGG- A-CUAACU-A AUGC(-GAAA )--GC|A--- UUUGCC-AA| AG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUG ---UUUUCAU -UAA-U|CA- A-GAACGAAA 3301 GUUAGGGGA- UCAAAGACG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CGUAG|UCU UA--ACU-AU AAACUAUACC GAC|UC|--- 3421 --gggau-cg gcu-g-gaac a---(----- cacg-----) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- -----ugu-c c-ag-ucg-g ca-ccgu--- ---------- ----auGA(- 3661 GAAA-)UCa- -aAGUC-uuu gGGU|-U|C- UGGGGGAAGU AU--GGUAC( --GCAA-)GU 3721 CUG-AAACUU -AAAG--GAA -UUG|AC-GG -AA-CAGCA- -C-AC-CAGA ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --A-GU|-GG 4021 AACCUGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--GAA ACUCACGAGC GC[aag-aca 4081 gaga-aggga uu-----gac aga(uugaga g-c)------ ucuuu----- cuu-gauu-c 4141 uuuggg---- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU-G-CAUG |GCC|GU-UC UUA|GUUGG- U|GGA(-GUG 4261 A-)UUUGUC- -UGG(UU-AA UU)CCGUUA- AC-GAACGAG ACCUU-AA|- ---------- 4321 ------(--- --)[CCU-GC UAACUAGucg c--ccugu-- ---------- --ga-aca-- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- ---------- ---acggg-- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ----augua- cu-------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------U CUUAGAGG]- --|------- ---------- GACU-Auu-g ug-c(----- 5041 --aagaa-)g ccaa-U-GGA AGUU-UAAGG CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UG A|UGCC|CC- 5221 U-AGA-CGUG CUCG-GCCGC A-CGCGCGUU ACAAU--G-A CUGGC----- ---------- 5281 ---(------ ----)[gcag aaagcau--- ---------- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- ---------- ---------- 5401 --uuccu-gu ccu(ggga-) agguac---g gguaau-cuu auuaau]--- ---------- 5461 -------acc agu-c-g--- UGUU-A-GGG AUAGUUCUU( UGGAAUUU)U GGAUCUUG-A 5521 ACGAGG-AAU U--UCUAGUA AG-UGC-AAG (-UCAUCAG- )CUUGC-G-U -UGAUUAUG- 5581 U-CCCUGCCG UU|UGUA-CA CACCGCCCGU CGCUUG-U-A GU-AAC---G AA-UGGucu- 5641 ggu-gaac-- cuu-cugga- cugc-uucu- ---------- ---------- ---------- 5701 -------(ga aua---)--- ---------- ---------- ---------- ---------- 5761 -aggag-c-g -ggaa-|aau -aaguaaacc cu-acc-a-u uugg-AACAA CA-AGAA-G- 5821 UCGUAACAAG GU-------- -----A-U-C UGUAGG(UGA A)CCUGCAGA AGGAUCA--- 5881 --a~~~~~~~ ~~~~~~~~|| ||| // LOCUS E.aedicula 5903 bp RNA RNA 14-JAN-1985 DEFINITION Euplotes aediculatus. ACCESSION No information KEYWORDS No information. SOURCE Euplotes aediculatus. ORGANISM Euplotes aediculatus. REFERENCE 1 (bases 1 to 2303) AUTHORS No information JOURNAL June 14 1985,Oct.13 1985,Nov.23 1985 STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: M14590 Phylo:Eukaryotes,Protozoan BASE COUNT 512 a 376 c 463 g 544 t 4008 others ORIGIN 1 |--------- -UAGUAAUCU GGU(UGA)UC CU|GCCAGU- A-GUCA-UAC --GCUUGUCU 61 CAAG|-GAUU AA-GCCAUGC A-UGUCU-AA GU|------- |--------- ----[----- 121 ---------- --------au aaagga---- ---------- uuuau-aau- gaa]------ 181 -----|---A CU|G-CAAA- UGGCU-CAUU CAAA-cagu- uau-aguu-- ----uauuug 241 auau<----- ---------- ---------- --------uc aagcuaauau ucuuauuagu 301 u>AAAUGG-A UAACCGUAG( -U-AAUU)CU AGAGC-UAA- UACAUG---- ---------- 361 ---------- ---------- ---------- -- -aaaucaugu -ag|guuucu gc|uuCCC-A UCA--GCUU- --GAUGGUA- 1141 GU(-GUAUUG G)ACA-ACCA U-|GGCAU-U CAC|GGGC-U AUCGGG|GGA -U-(UAGG-) 1201 GUU-CGAUU- CCG|GAGAGG G-AGCC(U-G AUAAAC)GGC UACC-ACUUC (UACG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GA- AAAUU-AUCC -AAUCCU-G( ---auu--)C 1321 AGGG-A-GGU -|A|GUGA-A AGAA-AU--- ---------- ---------- ---------- 1381 -----|---- ---------- ---------- ---------- ---------- ---------- 1441 --------AA uGAACUAGG- -a---(---- ---uuua)-- -u-CC-UGGG A-UCACAAU- 1501 ------GGGC ----UUGAUU -UGCA-AACA C-----UU-A G-CGA-GGAA C---->AAUU 1561 GGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCCAA 1621 U-AGAGUA|U AUAAA--CGU UCCUG-CAG| UUAuuCGAUG CUCGUAGUUG |--------- 1681 ---------- ---------- ---------- ---------- ---------- -|-------< 1741 gauuucugag g-uugagacg ggaggguggc uauggccauc gcccga-cuc uuuccucauc 1801 ca-cc---ug uu-ugcg-aa guccgggauu gauuucucgg cuucgggcgc aguaucuuac 1861 cauuucaaua u-ucguaguc uucaucgauu augu------ ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- --UGUUuCUU UG-AGCA--A 2461 AUUAUAGUGU UU-CA-GG-C AGGCgug--- ---------- ---------- ---------- 2521 ---------C -GCC-G--GA AUACAU-UAG CAUGGUA|UA -AACGAA-UU -GGACcGUGU 2581 gc-------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- -------ccg uaacugggcu ucuc|-cuua 2821 -uu-guuggu -uu-ga---- ---a----gg ACA-CG-GAG A--UGGUUAA UA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGA|CAGC guuuauuuca 3001 caAGGAGGCA UU|--AGUAU UUAAUUU-CC -AGAG(GU-G AAA---)UUC U-UUGA-A-A 3061 UAUUA-AAG- A-CUAACU-U AUGC(-GAAA )--GC|Aucg UUUGCC-AA| UG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUG ---UUUUCAU -UAA-U|CAu U-GAACGAAA 3301 GUUAGGGGA- UCAAAGACG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CCUAG|UCU UA--ACC-AU AAACGUUGCC GAC|UA|--- 3421 --Gggau-cg gag-g-g-cg ----(---ug cacaauc--) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- -------c-g c-cu-ucg-g ca-cCuu--- ---------- ----acGA(- 3661 GAAA-)UCa- -AAGUCuuuu gGGU|-U|C- UGUGGGUAGU AU--GG-UC( --GCAA-)GG 3721 CUG-AAACUU -AAAG--GAA -UUG|AC-GG -AA-GGGCA- -CCAC-CAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --A-GU|-GG 4021 AGCUUGCG|G CU-CAAUUUG (ACUCAA-CA )CGGG--AAA UCUUACCAGG UC[cag-aca 4081 uagc-gagga uugaca---- -ga(uugaua gc)------- ucuuucuug- ----auu--c 4141 uauggguauu u]-------- |--------- ---------- ---------- ---------- 4201 ---------- ---|UG-GU- GGU-G-CAUG |GCC|GU-UC UUA|GUUCG- U|GGA(-GUG 4261 A)UUC-GUC- -UGG(UU-AA UU)CCGUUAa AC-GAACGAG ACCUC-AG|- ---------- 4321 ---------- ---[CCU-GC UAAAUAGuug c--ucgccuu uu-------- --cu-au--- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- ---------- aagacuug-- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ----a-caa- CU-------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------U CUUAGAGG]- --|------- ---------- GACU-Uug-u -g-u(----- 5041 ---gcaa-)c caca-A-GGA AGUU-UGAGG CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UG A|UGCC|CUU 5221 A-G-A-UGUC CUGG-GCCGC A-CGCGUGCU ACACU--G-A UACGU----- ---------- 5281 ---------- -----[acaa cgaggua--- ---------- ---------- ---------- 5341 ---------- ---uaugua( -cuug)uaca u--------- ---------- ---------- 5401 caaugcu-gc ucc(gaaa-) uagacg--ag cuuaaucuu- auaaau]--- ---------- 5461 -------ACG UAU-CG-UG- CU---GCGGA -UAGAUCGU( UGAAAUUA)U GAAUCUUG-A 5521 AGGUGG-AAU U-CCU-AGUA AG-CGC-ACG (-UCACUAA- )CGUGC-G-U -UGAUUACG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUCC-U-A CC-AAUuucG AG-UGAUcu- 5641 ggugaac-c- ucu-uugga- cugu-cga-- ---------- ---------- ---------- 5701 -------(gc aa----)--- ---------- ---------- ---------- ---------- 5761 -----u-cgc -gaaa-|uua -gagugaacc ug-ACU-A-C UUAGcAGGAA GG-AGAA-G- 5821 UCGUAACAAG GU-------- -----U-U-C CGUAGG(UGA A)CCUGCGGA AGGAUCA--- 5881 --AUCUUAUA UUCAUAC~|| ||| // LOCUS G.chattoni 5903 bp RNA RNA 11-JAN-191 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: X56533 LOCUS GCHSSRRNA 1746 bp ds-DNA INV 27-AUG-1991 DEFINITION G.chattoni small subunit ribosomal RNA gene ACCESSION X56533 KEYWORDS SSU ribosomal RNA; ribosomal RNA; small subunit ribosomal RNA. SOURCE Glaucoma chattoni DNA. ORGANISM Glaucoma chattoni Eukaryota; Animalia; Protozoa; Ciliophora; Oligohymenophora; Hymenostomata; Hymenostomatida; Tetrahymenina; Glaucomidae. REFERENCE 1 (bases 1 to 1746) AUTHORS Greenwood,S.J., Sogin,M.L. and Lynn,D.H. TITLE Phylogenetic relationships within the class Oligohymenophorea, phylum Ciliophora, inferred from the complete small subunit ribosomal RNA gene sequences of Colpidium Campylum, Glaucoma chattoni, and Opisthonecta henneguyi JOURNAL J. Mol. Evol. 33, 163-174 (1991) STANDARD full automatic COMMENT *source: is_germline=Y; See also X56531, X56532 From EMBL entry GCSSRRNA; dated 21-AUG-1991. FEATURES Location/Qualifiers misc_feature 1..21 /note="primer" rRNA 22..1719 /product="small subunit ribosomal RNA" misc_feature 1720..1746 /note="primer" BASE COUNT 514 a 326 c 432 g 471 t 3 others ORIGIN BASE COUNT 514 a 326 c 432 g 471 t 4160 others ORIGIN 1 |--------- -----AACCU GGU(UGA)UC CU|GCCAGU- U-A-CA-UAU --GCUUGUCU 61 UAAA|-UAUU AA-CCCAUGC A-UGUGC-CA GU|------- |-------(- ---)[----- 121 ---------- ---------u caguau---u ---------- -ga-a-cagc gaa]------ 181 -----|---A CU|G-AGAA- UGGCU-CAUU AAAA-cagu- uau-aguu-- ----uauuug 241 auaa<----- ---------- ---------- ---------- ---------- --uuaaagau 301 u>ACAUGG-A UAACCGAGC( -U-AAUU)GU UGGGC-UAA- UACAUG---- ----(----) 361 ---------- -------(-- --)--|---- -- -aaaucaucu -aa|guuucu gc|--CCU-A UCA--GCUCU C-GAUGGUA- 1141 GU(-GUAUUG G)ACU-ACCA U-|GGCAG-U CAC|GGGU-A A-CGGA|GAA -U-(UAGG-) 1201 GUU-CGAUU- CCG|GAGAAG G-AGCC(U-G AGAAAC)GGC UACU-ACAAC (UACG-)GUU 1261 UGGCAGC-A- ---------| GGG-AA-GA- AAAUU-GGCC -AAUCCU-A( ---auu--)C 1321 AGGG-A-GCC -|A|GUGACA AGAA-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AG CAGACCGGG- --AAA(---- --cuacg)UU U--CUACGGU A-CUGAAAU- 1501 ------GAGA ----ACAGUG -UUAA--UCU C-----UU-A G-CGA-GAAA C---->AAUU 1561 G--A|GG-CA A-GC-C-UGC U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCCAA 1621 U-AGCGUA|C AUUAA--AG- -NGNG-CAG| UUA--AAAAG CUCGUAGUUG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 aacuucagug u-ccag-guu cgucuc--gg (c--ucg)cc gaggca-acu ---------- 1801 ---------- -----cu-g- ga-cau-acg -ucu------ ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- --------gc aagcuaaaau 2161 cggccuu--- ---------- ---------- ---uacuggu ucga------ ---------- 2221 ---cuuagug aguagaca-- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- --UUUUACUG UGcAAAA--A 2461 AUUAGAGUGU UU-CA-GG-C AGGUuu---- ---------- ---------- ---------- 2521 --------ua -gcc-c--gU AUACAU-UAG CAUGGAA|UA -AUGGAA-UA -GGACuAAGU 2581 c--------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ----|-CAUU 2821 -UU-AUUGGU -UA-UU---- --------gg AUU-UG-GUA A--UGAUUAA UA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGA|CAAU ---------- 3001 --UGGGGGCA UU|--AGUAU UUAAUAG-UC -AGAG(GU-G AAA---)UUC U-UGGA-U-U 3061 UAUUA-AGG- ---NAACU-A AUGC(-GAAA )--GC|A--- UUUGCC-AA| AG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUG ---UUUUCAU -UAA-U|CA- A-GAACGAAA 3301 GUUAGGGGA- UCAAAGACG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CGUAG|UCU UA--ACU-AU AAACUAUACC GAC|UC|--- 3421 --gggau-cg gcu-g-g-a- ----(----a uauaug---) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- -------u-c c-ag-ucg-g ca-ccgu--- ---------- ----auGA(- 3661 GAAA-)UCa- -aAGUC-uuu gGGU|-U|C- UGGGGGAAGU AU--GGUAC( --GCAA-)GU 3721 CUG-AAACUU -AAAG--GAA -UUG|AC-GG -AA-GAGCA- -C-AC-CAGA ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --A-GU|-GG 4021 AACCUGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--GAA ACUCACGAGC GC[aag-aca 4081 gaga-aggga uu-----gac aga(uugaga g-c)------ ucuuu----- cuu-gauu-c 4141 uuuggg---- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU-G-CAUG |GCC|GU-UC UUA|GUUGG- U|GGA(-GUG 4261 A-)UUUGUC- -UGG(UU-AA UU)CCGUUA- AC-GAACGAG ACCUU-AA|- ---------- 4321 ------(--- --)[CCU-GC UAACUAGucu c--ccugu-- ---------- --ga-aca-- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- ---------- ---acggg-- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ----gugua- cu-------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------U CUUAGAGG]- --|------- ---------- GACU-Auu-g ug-c(----- 5041 --aagaa-)g ccaa-U-GGA AGUU-UAAGG CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UG A|UGCC|CC- 5221 U-AGA-C-UG CUCG-GCCGC A-CGCGCGUU ACAAU--G-A CUGGC----- ---------- 5281 ---(------ ----)[gcag aaaguuu--- ---------- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- ---------- ---------- 5401 --uuccu-gg ccu(ggga-) agguuc---g gguaau-cuu auuaau]--- ---------- 5461 -------acc agu-c-g--- UGUU-A-GGA AUAGUUCUU( UGGAAUUU)U GGAUCUUG-A 5521 ACGAGG-AAU U--UCUAGUA AG-UGC-AAG (-UCAUCAG- )CUUGC-G-U -UGAUUAUG- 5581 U-CCCUGCCG UU|UGUA-CA CACCGCCCGU CGCUUG-U-A GU-AAC---G AA-UGGucu- 5641 ggu-gaac-- cuu-cugga- cugc-uca-- ---------- ---------- ---------- 5701 -------(gc aa----)--- ---------- ---------- ---------- ---------- 5761 --uaag-c-g -gaaa-|aau -aaguaaacc ca-ucc-a-u uugg-AACAA CA-AGAA-G- 5821 UCGUAACAAG GU-------- -----A-U-C UGUAGG(UGA A)CCUGCAGA AGGAUCA--- 5881 --agc~~~~~ ~~~~~~~~|| ||| // LOCUS O.granulif 5903 bp RNA RNA 11-JAN-191 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: X53486 LOCUS OFARRN16L 1778 bp ds-DNA INV 21-JUN-1991 DEFINITION O. granulifera 16S-like ribosomal RNA ACCESSION X53486 KEYWORDS 16S-like ribosomal RNA; ribosomal RNA. SOURCE Oxytricha granulifera DNA. ORGANISM Oxytricha granulifera Eukaryota; Animalia; Protozoa; Ciliophora; Polyhymenophora; Spirotricha; Hypotrichida; Sporadotrichina; Oxytrichidae. REFERENCE 1 (bases 1 to 1778) AUTHORS Sogin,M.L. JOURNAL Unpublished (1990) STANDARD full automatic REFERENCE 2 (bases 1 to 1778) AUTHORS Schlegel,M., Elwood,H.J. and Sogin,M.L. TITLE Molecular evolution in hypotrichous Ciliates: sequence of the small subuit ribosomal RNA genes from Onychodromus quadricornutus and Oxytricha granulifera (Oxytrichidae, Hypotrichida, Ciliophora) JOURNAL J. Mol. Evol. 32, 64-69 (1991) STANDARD full automatic COMMENT From EMBL 27 entry OGRRN16L; dated 19-MAR-1991. FEATURES Location/Qualifiers misc_feature 1..20 /note="PCR primer" rRNA 21..1757 /product="16S-like ribosomal RNA" misc_feature 1758..1778 /note="PCR primer" BASE COUNT 475 a 361 c 457 g 485 t ORIGIN BASE COUNT 475 a 361 c 457 g 485 t 4125 others ORIGIN 1 |--------- -----AACCU GGU(UGA)UC CU|GCCAGU- A-GUCA-UAU --GCUUGUCU 61 CAAA|-GACU AA-GCCAUGC A-UGUCU-AA GU|------- |-------(- ---)[----- 121 ---------- --------au aaaugu---u ---------- -au-a-cagu gaa]------ 181 -----|---A CU|G-CGAA- UGGCU-CAUU AAAA-cagu- uau-aguu-- ----uauuug 241 auaa<----- ---------- ---------- ---------- ---------- --ucgaa-uu 301 u>ACAUGG-A UAACCGUGG( -U-AAUU)CU AGAGC-UAA- UACAUG---- ----(----) 361 ---------- -------(-- --)--|---- -- -acaucauuc -aa|guuucu gc|--CCC-A UCA--GCUUU C-GAUGGUA- 1141 GU(-GUAUUG G)ACU-ACCA U-|GGCUU-U AAC|GGGU-A A-CGGA|GGA -U-(UAGG-) 1201 GUU-CGAUU- CCG|GAGAGG G-AGCC(U-G AGAAAC)GGC UACC-ACAUC (UAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GU- AAAUU-ACCC -AAUCCU-G( ---acu--)C 1321 AGGG-A-GGU -|A|GUGACA AGAA-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AA CGGACCGAA- ---GC(---- ---cuau)GU ---UU-CGGG A-UUGCAAU- 1501 ------GAGU ----AGAAUU -UAAA--CCC C-----UU-U A-CGA-GGAU C---->AAUU 1561 GGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCCAA 1621 U-AGCGUA|U AUUAA--AGU UGUUG-CAG| UUA--AAAAG CUCGUAGUUG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 gauuuc-ugg g-aggg-ugc caaugu--c- cg-cucguuu gcgugu-gca ---------- 1801 ---------- ------g-c- ggcgcc-c-- -uucca---- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- -uccuuc-ug uuaacguuuc 2161 uugguau--- ---------- ---------- ---ucauuua cugg------ ---------- 2221 ---uuucggg cucagaua-- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- --CUUUACCU UG-AGAA--A 2461 AUUAGAGUGU UC-CA-GG-C AGGCuu---- ---------- ---------- ---------- 2521 --------gc gcc--g--gA AUACAU-UAG CAUGGAA|UA -AUAGAA-UA -GGACuUUAG 2581 uc-------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ----|-UCCU 2821 -UU-GUUGGU -UC-GA---- ------ggga CUG-AA-GUA A--UGAUUAA UA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGA|UAGU ---------- 3001 --CGGGGGCA UU|--AGUAU UUAAUUG-UC -AGAG(GU-G AAA---)UUC U-CGGA-U-U 3061 UGUUA-AAG- A-CUAACU-U AUGC(-GAAA )--GC|A--- UUUGCC-AA| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUG ---UUUUCAU -UAA-U|CA- A-GAACGAAA 3301 GUUAGGGGA- UCAAAGACG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CCUAG|UCU UA--ACC-AU AAACUAUGCC GAC|UA|--- 3421 --gggau-cg gag-g-c-g- ----(---cg cuuuauc--) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- -------c-g c-cu-ucg-g ca-ccuu--- ---------- ----auGA(- 3661 GAAA-)UCa- -aAGUC-uuu gGGU|-U|C- UGGGGGGAGU AU--GG-UC( --GCAA-)GG 3721 CUG-AAACUU -AAAG--GAA -UUG|AC-GG -AA-GGGCA- -CCAC-CAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --A-GU|-GG 4021 AGCUUGCG|G CU-CAAUUUG (ACUCAA-CA )CGGG--AAA ACUUACCAGG UC[cag-aca 4081 uagu-gagga uu-----gac aga(-uugau agc)------ ucuuu----- cuu-gauu-c 4141 uauggg---- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU-G-CAUG |GCC|GU-UC UUA|GUUGG- U|GGA(-GUG 4261 A-)UUUGUC- -UGG(UU-AA UU)CCGUUA- AC-GAACGAG ACCUU-AG|- ---------- 4321 ------(--- --)[CCU-AC UAACUAGucg a--accaauc ---------- --uc-c---- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- ---------- -gauuggc-- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ----ugcga- cu-------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------U CUUAGAGG]- --|------- ---------- GACU-Uug-u -g-g(----- 5041 --gccaa-)a caca-A-GGA AGUU-UGAGG CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UG A|UGCC|CU- 5221 U-AGA-UGUC CUGG-GCCGC A-CGCGUGCU ACACU--G-A CGCAU----- ---------- 5281 ---(------ ----)[acag cgaguac--- ---------- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- ---------- ---------- 5401 -guccca-gc ucc(gcga-) ggcagc---u gguaau-c-- agcaau]--- ---------- 5461 -------aug cgu-c-g--- UGAU-G-GGG AUAGAUCUU( UGGAAUUA)U AGAUCUUG-A 5521 ACGAGG-AAU U--CCUAGUA AG-CGC-AAG (-UCAUUAC- )CUUGC-G-C -UGAUUAAG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUCC-U-A CC-GAUUucG AG-UGGucc- 5641 ggu-gaac-- cuu-uugga- cugc-gcga- ggc------- ---------- ---------- 5701 -------(cc cga---)--- ---------- ---------- ---------- -------g-- 5761 ccuugu-gcg -gaaa-|auc -aaguaaacc au-auc-a-c uuag-AGGAA GG-AGAA-G- 5821 UCGUAACAAG GU-------- -----U-U-C CGUAGG(UGA A)CCUGCAGA AGGAUCA--- 5881 --uua~~~~~ ~~~~~~~~|| ||| // LOCUS O.henneguy 5903 bp RNA RNA 11-JAN-191 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: X56531 LOCUS OPSSSRRNA 1730 bp ds-DNA INV 19-SEP-1991 DEFINITION O.henneguyi small subunit ribosomal RNA gene ACCESSION X56531 KEYWORDS SSU ribosomal RNA; ribosomal RNA; small subunit ribosomal RNA. SOURCE Opisthonecta henneguyi DNA. ORGANISM Opisthonecta henneguyi Eukaryota; Animalia; Protozoa; Ciliophora; Oligohymenophora; Peritricha; Peritrichida; Sesselina; Opisthonectidae. REFERENCE 1 (bases 1 to 1730) AUTHORS Greenwood,S.J., Sogin,M.L. and Lynn,D.H. TITLE Phylogenetic relationships within the class Oligohymenophorea, phylum Ciliophora, inferred from the complete small subunit ribosomal RNA gene sequences of Colpidium Campylum, Glaucoma chattoni, and Opisthonecta henneguyi JOURNAL J. Mol. Evol. 33, 163-174 (1991) STANDARD full automatic COMMENT *source: strain=ATTC 30600; *source: is_germline=Y; See also X56532, X56533 From EMBL entry OHSSRRNA; dated 21-AUG-1991. FEATURES Location/Qualifiers misc_feature 1..21 /note="primer" rRNA 22..1707 /product="small subunit ribosomal RNA" misc_feature 1708..1730 /note="primer" BASE COUNT 509 a 315 c 428 g 478 t ORIGIN BASE COUNT 509 a 315 c 428 g 478 t 4173 others ORIGIN 1 |--------- -----AACCU GGU(UGA)UC CU|GCCAGU- A-GUCA-UAU --GCUUGUCU 61 UAAA|-GAUU AA-UCCAUGC A-UGUGU-AA GU|------- |-------(- ---)[----- 121 ---------- --------au aaguau---u ---------- -gu-a-cagc gaa]------ 181 -----|---A CU|G-CGAA- UGGCU-CAUU ACAU-cagu- uau-aauu-- ----uauuug 241 auaa<----- ---------- ---------- ---------- ---------- --ucgaaagu 301 u>ACAUGG-A UAACCGUGA( -C-AA-A)UU ACAGC-UAA- UACAUG---- ----(----) 361 ---------- -------(-- --)--|---- -- -aaaucauuc -aa|guuucu gc|--CCU-A UCA--GCUUU G-GAUGGUA- 1141 GU(-GUAUUG G)ACU-ACCA U-|GGCAG-U CAC|GGGU-A A-CGGA|GAA -U-(UAGG-) 1201 GUU-CGAUU- CCG|GAGAGG G-AGCC(U-G AGAAAC)GGC UACC-ACAUC (UACG-)GAA 1261 -GGCAGC-A- ---------| GGA-GC-GA- AAAUU-GCCC -AAUCCC-G( ---aca--)C 1321 GGGG-A-GGC -|A|GUGACG AGAA-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AA CAACUCUUG- ----G(---- --uuauu)C- ---UA-AGA- A-GUGUAAU- 1501 ------GAGG ----AUAAUU -UAAA--ACC C-----UU-A C-CGA--AAG C---->AAUU 1561 GGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCCAA 1621 U-AGCGUA|U AUUAA--AGU UGUUG-CAG| UUA--AAAAG CUCGUAGUUG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 aaguuc-ugg c-uguu-cga uccucg--a- gc-ucuguag ccgagg-acu ---------- 1801 ---------- -----cg-a- caguca-ucc -gcuu----- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- --------gc aaauauaugu 2161 ucgccuu--- ---------- ---------- ---uaaccgg gugg------ ---------- 2221 ---cuauaug aguaagca-- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- --AUUUACCU UG-AGAA--A 2461 AACAGAGUGU UC-CA-GG-C AGGUuu---- ---------- ---------- ---------- 2521 ---------- gucc-g--gA AUGCAU-UAG CAUGGAA|UA -AUAGAA-UA -UGACuGAAG 2581 u--------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ----|-CGAU 2821 -UU-AUUGGU -UU-GA---- --------gg CUU-UA-GUA A--UGAUUAA UA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGAA|CAGU ---------- 3001 --CGGGGGCA UU|--GGUAC UUGACAG-UC -AGAG(GU-G AAA---)UUC U-AGGA-U-U 3061 UGUCG-AAG- A-CUAACA-A AUGC(-GAAA )--CG|A--- UUUGCC-AA| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUG ---UUUUCAU -UAA-U|CA- A-GAACGAAA 3301 GUUAGGGGA- UCAAAGACG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CCUAG|UCU UA--ACU-AU AAACUAUACC GAC|UC|--- 3421 --ggauu-ca gau-g-a-au ----(----c auaaa----) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ------gu-u c-au-uug-g ga-ccgu--- ---------- ----agGA(- 3661 GAAA-)UCa- -aAGUU-uuu gGGU|-U|C- UGGGGGAAGU AU--GG-UC( --GCAA-)GG 3721 CUG-AAACUU -AAAG--GAA -UUG|AC-GG -UU-UUGCA- -CCACCAUGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --A-GU|-GG 4021 AGUCUGCG|G CU-UAAUUUG (ACUCAA-CA )CUGG--GAA ACUCAUCAGG GC[aag-aag 4081 auug-uagga uu-----gac aga(-uugag agu)------ ucuuu----- cuu-gauu-g 4141 gucuag---- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU-G-CAUG |GCC|GU-UC UUA|GUUGG- U|GGA(-GUG 4261 A-)UUUGUC- -UGG(UU-AA UU)CCGUUA- AC-GAACGAG ACCUU-AA|- ---------- 4321 ------(--- --)[CCU-GC UAACUAGuac a--cagau-- ---------- --ga-caa-- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- ---------- ---aucug-- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ----ugaua- cu-------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------U CUUAGAGG]- --|------- ---------- GACU-Aug-u -g-a(----- 5041 --uguaa-)u caca-U-GGA AGUU-UGAGG CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UG A|UGCC|CU- 5221 U-AGA-UGUC CUGA-GCUGC A-CGCGUACU ACAAU--G-G UGCUU----- ---------- 5281 ---(------ ----)[ucaa cgagcuu--- ---------- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- ---------- ---------- 5401 --uuccu-ga ucc(gaaa-) ggauuu---g gguaau-cuu uuuagu]--- ---------- 5461 -------gag cac-c-g--- UGCU-U-GGG AUAGAUCUU( UGUAAUUA)U GGAUCUUG-A 5521 ACUAGG-AAU U--CCUAGUA AG-CAC-GCG (-UCAUCAG- )CGCGU-G-C -UGAUUACG- 5581 U-CCCUGCAA AA|UGUA-CA CACCGCCCGU CGCUAU-U-A CC-GAUU--G AG-UGUaaa- 5641 ggu-gaac-- cuu-cucga- uaga-c---- ---------- ---------- ---------- 5701 -------(gc aa----)--- ---------- ---------- ---------- ---------- 5761 -----g-ucc -agaa-|auu -aaguaaacc uu-ugc-a-c uuag-AGGAA AU-AAAA-G- 5821 UCGUAACAAG GU-------- -----U-U-C CGUAGG(UGA A)CCUGCAGA AGGAUC~--- 5881 --~~~~~~~~ ~~~~~~~~|| ||| // LOCUS O.nova.1 5903 bp RNA RNA 27-JAN-1984 DEFINITION Oxytrich nova 16S. ACCESSION No information KEYWORDS No information. SOURCE Oxytrich nova 16S. ORGANISM Oxytrich nova 16S. REFERENCE 1 (bases 1 to 2303) AUTHORS No information JOURNAL O.nova:who:published STANDARD No information COMMENTS Organism information Culture collection: ? Sequence information (bases 1 to 5903) Corresponding GenBank entry: X03948 Phylo:Eukaryotes,Protozoan BASE COUNT 481 a 348 c 449 g 496 t 4129 others ORIGIN 1 |--------- ---GUAAUCU GGU(UGA)UC CU|GCCAGU- A-GUCA-UAU --GCUUGUCU 61 CAAA|-GACU AA-GCCAUGC A-UGUCU-AA GU|------- |-------(- ---)[----- 121 ---------- --------au aagugu---u ---------- -au-a-cagu gaa]------ 181 -----|---A CU|G-CGAA- UGGCU-CAUU AAAa-cagu- uau-aguu-- ----uauuug 241 auaa<----- ---------- ---------- ---------- ---------- ---ucaaauu 301 u>ACAUGG-A UAACCGUGG( -U-AAUU)CU AGAGC-UAA- UACAUG---- ----(----) 361 ---------- -------(-- --)--|---- -- -acaucauuc -aa|guuucu gc|--CCC-A UCA--GCUUU C-GAUGGUA- 1141 GU(-GUAUUG G)ACU-ACCA U-|GGCUU-U CAC|GGGU-A A-CGGA|GGA -U-(UAGG-) 1201 GUU-CGAUU- CCG|GAGAGG G-AGCC(U-G AGAAAC)GGC UACC-ACAUC (UAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GU- AAAUU-ACCC -AAUCCU-G( ---acu--)C 1321 AGGG-A-GGU -|A|GUGACA AGAA-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AA CGGACCGAA- ---GC(---- ---cuau)GU ---UU-CGGG A-UUGCAAU- 1501 ------GAGU ----AGAAUU -UAAA--CCC C-----UU-U A-CGA-GGAU C---->AAUU 1561 GGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCCAA 1621 U-AGCGUA|U AUUAA--AGU UGUUG-CAG| UUA--AAAAG CUCGUAGUUG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 gauuucuggg a---ga-gcg ccaaug--u- cg-ucuuguu gacugu-gca ---------- 1801 ---------- ------g-c- ggcgcu-c-- -uuccau--- -------ccu uc-------- 1861 ug-------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- --------uu aacguuucgg 2161 guauuca--- ---------- ---------- ----uuuacu cguc------ ---------- 2221 ----ucgggc UCaGA-ua-- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- --UUUUACCU UG-AGAA--A 2461 AUUAGAGUGU UC-CA-gG-C AGGCuc---- ---------- ---------- ---------- 2521 --------gc GCC--g--GA AUACAU-UAG CAUGGAA|UA -AUAGAA-UA -GGACuUUAG 2581 uc-------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ---U|--CCU 2821 -UU-GUUGGU -UU-GA---- ----gg--ga CUG-AA-GUA A--UGAUUAA UA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGA|UAGU ---------- 3001 --UGGGGGCA UU|--AGUAU UUAAUUG-UC -AGAG(GU-G AAA---)UUC U-CGGA-U-U 3061 UGUUA-AAG- A-CUAACU-U AUGC(-GAAA )--GC|A--- UUUGCC-AA| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUG ---UUUUCAU -UAA-U|CA- A-GAACGAAA 3301 GUUAGGGGA- UCAAAGACG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CCUAG|UCU UA--ACC-AU AAACUAUGCC GAC|UA|--- 3421 --gggau-cg gag-g-c-g- ----(--cgc uuuauc---) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- -------c-g c-cu-ucg-g ca-ccuu--- ---------- ----auGA(- 3661 GAAA-)UCa- -AAGUC-uuu gGGU|-U|C- UGGGGGGAGU AU--GG-UC( --GCAA-)GG 3721 CUG-AAACUU -AAAG--GAA -UUG|AC-GG -AA-GGGCA- -CCAC-CAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --A-GU|-GG 4021 AGCUUGCG|G CU-CAAUUUG (ACUCAA-CA )CGGG--AAA ACUUACCAGG UC[cag-aca 4081 uagu-gagga uu-----gac aga(-uugau agc)------ ucuuu----- cuu-gauu-c 4141 uauggg---- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU-G-CAUG |GCC|GU-UC UUA|GUUGG- U|GGA(-GUG 4261 A-)UUUGUC- -UGG(UU-AA UU)CCGUUA- AC-GAACGAG ACCUU-AG|- ---------- 4321 ------(--- --)[CcU-aC UAACUAGucg a--------- ---------- --uu-cg--- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- ------uugc uaagcgaa-- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ----cccgA- CU-------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------U CUUAGAGG]- --|------- ---------- GACU-Uug-u -g-a(----- 5041 ---cuaa-)a caca-A-GGA AGuU-UGAGG CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UG A|UGCC|CU- 5221 U-AGA-UGUC CUGG-GCCGC A-CGCGUGCU ACACU--G-A CGCAU----- ---------- 5281 ---(------ ----)[acag cgaguac--- ---------- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- ---------- ---------- 5401 -uuccca-gc ucc(gaga-) ggcagc---u gguaaucag- --caau]--- ---------- 5461 -------aug cgu-c-g--- uGAU-G-GGG AUAGAUCUU( UGGAAUUA)U AGAUCUUG-A 5521 ACGAGG-AAU U--CCUAGUA AG-CGC-AAG (-UCAUUAC- )CUUGC-G-C -UGAUUAAG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUCC-U-A CC-GAUuucG AG-UGAucc- 5641 ggu-gaac-- cau-uugga- ccgc-ggaa- gu-------- ---------- ---------- 5701 -------(cu cgu---)--- ---------- ---------- ---------- ---------- 5761 auuucu-gug -gaaa-|auc -uaguaaacc au-auc-a-c uuag-AGGAA GG-AGAA-G- 5821 UCGUAACAAG GU-------- -----U-U-C CGUAGG(UGA A)CCUGCGGA AGGAUCA--- 5881 --UUAA~~~~ ~~~~~~~~|| ||| // LOCUS O.nova.2 5903 bp RNA RNA 20-MAY-1987 DEFINITION Oxytricha nova.; ribosomal RNA. ACCESSION M14601 KEYWORDS ribosomal RNA. SOURCE Oxytricha nova. ORGANISM Oxytricha nova. REFERENCE 1 (bases 1 to 1771) AUTHORS Elwood,H.J., Olsen,G.J. and Sogin,M.L. TITLE The Small-Subunit Ribosomal RNA Gene Sequences from the Hypotrichous Ciliates Oxytricha nova and Stylonychia pustulata JOURNAL Mol. Biol. Evol. 2, 399-410 (1985) STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: M14601 Computer-readable sequence for [1] kindly provided by M.L.Sogin , 19-OCT-1986. NCBI gi: 159822 BASE COUNT 480 a 348 c 448 g 495 t 4132 others ORIGIN 1 |--------- -----AAUCU GGU(UGA)UC CU|GCCAGU- A-GUCA-UAU --GCUUGUCU 61 CAAA|-GACU AA-GCCAUGC A-UGUCU-AA GU|------- |--------- ----[----- 121 ---------- --------au aagugu---- ---------- uauac-agu- gaa]------ 181 -----|---A CU|G-CGAA- UGGCU-CAUU AAAA-cagu- uau-aguu-- ----uauuug 241 auaa<----- ---------- ---------- ---------- ---------- ---ucaaauu 301 u>ACAUGG-A UAACCGUGG( -U-AAUU)CU AGAGC-UAA- UACAUG---- ---------- 361 ---------- ---------- ---------- -- -acaucauuc -aa|guuucu gc|--CCC-A UCA--GCUUU C-GAUGGUA- 1141 GU(-GUAUUG G)ACU-ACCA U-|GGCUU-U CAC|GGGU-A A-CGGA|GGA -U-(UAGG-) 1201 GUU-CGAUU- CCG|GAGAGG G-AGCC(U-G AGAAAC)GGC UACC-ACAUC (UAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GU- AAAUU-ACCC -AAUCCU-G( ---acu--)C 1321 AGGG-A-GGU -|A|GUGACA AGAA-AU--- ---------- ---------- ---------- 1381 -----|---- ---------- ---------- ---------- ---------- ---------- 1441 --------AA CGGACCGAA- -GC--(---- ---cuau)-- GU-UU-CGGG A-UUGCAAU- 1501 ------GAGU ----AGAAUU -UAAA--CCC C-----UU-U A-CGA-GGAU C---->AAUU 1561 GGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCCAA 1621 U-AGCGUA|U AUUAA--AGU UGUUG-CAG| UUA--AAAAG CUCGUAGUUG |--------- 1681 ---------- ---------- ---------- ---------- ---------- -|-------< 1741 gauuucuggg a-gagcgcca augucgucuu guugacugug cagcgg-cgc ucuuccaucc 1801 uu-cu---gu ua-acgu-uu cggguauuca uuuacucguc ucgggcucag aua------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- --UUUUACCU UG-AGAA--A 2461 AUUAGAGUGU UC-CA-GG-C AGGCucg--- ---------- ---------- ---------- 2521 ---------C -GCC-G--GA AUACAU-UAG CAUGGAA|UA -AUAGAA-UA -GGACuUUAG 2581 uc-------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ------uccu 2821 -uu-guuggu -uu-ga---- --gg----ga CUG-AA-GUA A--UGAUUAA UA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGA|UAGU ---------- 3001 --UGGGGGCA UU|--AGUAU UUAAUUG-UC -AGAG(GU-G AAA---)UUC U-CGGA-U-U 3061 UGUUA-AAG- A-CUAACU-U AUGC(-GAAA )--GC|A--- UUUGCC-AA| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUG ---UUUUCAU -UAA-U|CA- A-GAACGAAA 3301 GUUAGGGGA- UCAAAGACG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CCUAG|UCU UA--ACC-AU AAACUAUGCC GAC|UA|--- 3421 --Gggau-cg gag-g-c-g- ----(--cgc uuuauc---) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- -------c-g c-cu-ucg-g ca-cCuu--- ---------- ----auGA(- 3661 GAAA-)UCa- -AAGUC-uuu gGGU|-U|C- UGGGGGGAGU AU--GG-UC( --GCAA-)GG 3721 CUG-AAACUU -AAAG--GAA -UUG|AC-GG -AA-GGGCA- -CCAC-CAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --A-GU|-GG 4021 AGCUUGCG|G CU-CAAUUUG (ACUCAA-CA )CGGG--AAA ACUUACCAGG UC[cag-aca 4081 uagu-gagga uu-----gac aga(-uugau agc)------ ucuuu----- cuu-gauu-c 4141 uauggg---- -]-------- |--------- ---------- ---------- ---------- 4201 ---------- ---|UG-GU- GGU-G-CAUG |GCC|GU-UC UUA|GUUGG- U|GGA(-GUG 4261 A-)UUUGUC- -UGG(UU-AA UU)CCGUUA- AC-GAACGAG ACCUU-AG|- ---------- 4321 ---------- ---[CCU-AC UAACUAGucg auucguugcu aagcgaaccc ga-------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- ---------- ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- CU-------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------U CUUAGAGG]- --|------- ---------- GACU-Uug-u -g-a(----- 5041 ---cuaa-)a caca-A-GGA AGUU-UGAGG CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UG A|UGCC|CUU 5221 A-G-A-UGUC CUGG-GCCGC A-CGCGUGCU ACACU--G-A CGCAU----- ---------- 5281 ---------- -----[acag cgaguac--- ---------- ---------- ---------- 5341 ---------- ---------- ---------- ---------- ---------- ---------- 5401 -uucc-cagc ucc(gaga-) ggcag----c uggua-auc- agcaau]--- ---------- 5461 -------AUG CGU-CG-UG- AU---GGGGA -UAGAUCUU( UGGAAUUA)U AGAUCUUG-A 5521 ACGAGG-AAU U-CCU-AGUA AG-CGC-AAG (-UCAUUAC- )CUUGC-G-C -UGAUUAAG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUCC-U-A CC-GAUuucG AG-UGAUcc- 5641 ggugaac--- cau-uugga- ccgc-ggaa- gu-------- ---------- ---------- 5701 -------(cu cgu---)--- ---------- ---------- ---------- ---------a 5761 uuucug-ugg -aaaa-|-uc -uaguaaacc au-AUC-A-C UUAG-AGGAA GG-AGAA-G- 5821 UCGUAACAAG GU-------- -----U-U-C CGUAGG(UGA A)CCUGCGGA AGGAUCA--- 5881 --UUA~~~~~ ~~~~~~~~|| ||| // LOCUS O.quadrico 5903 bp RNA RNA 11-JAN-191 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: X53485 LOCUS ONYRRN16L 1771 bp ds-DNA INV 21-JUN-1991 DEFINITION O. quadricornutus 16S-like ribosomal RNA ACCESSION X53485 KEYWORDS 16S-like ribosomal RNA; ribosomal RNA. SOURCE Onychodromus quadricornutus DNA. ORGANISM Onychodromus quadricornutus Eukaryota; Animalia; Protozoa; Ciliophora; Polyhymenophora; Spirotricha; Hypotrichida; Sporadotrichina; Oxytrichidae. REFERENCE 1 (bases 1 to 1771) AUTHORS Sogin,M.L. JOURNAL Unpublished (1990) STANDARD full automatic REFERENCE 2 (bases 1 to 1771) AUTHORS Schlegel,M., Elwood,H.J. and Sogin,M.L. TITLE Molecular evolution in hypotrichous Ciliates: sequence of the small subuit ribosomal RNA genes from Onychodromus quadricornutus and Oxytricha granulifera (Oxytrichidae, Hypotrichida, Ciliophora) JOURNAL J. Mol. Evol. 32, 64-69 (1991) STANDARD full automatic COMMENT From EMBL 27 entry OQRRN16L; dated 19-MAR-1991. FEATURES Location/Qualifiers misc_feature 1..20 /note="PCR primer" rRNA 21..1750 /product="16S-like ribosomal RNA" misc_feature 1751..1771 /note="PCR primer" BASE COUNT 481 a 342 c 451 g 496 t 1 others ORIGIN BASE COUNT 481 a 342 c 451 g 496 t 4133 others ORIGIN 1 |--------- -----AACCU GGU(UGA)UC CU|GCCAGU- A-GUCA-UAU --GCUUGUCU 61 CAAA|-GACU AA-GCCAUGC A-UGUCU-AA GU|------- |-------(- ---)[----- 121 ---------- --------au aaaugc---u ---------- -au-a-cagu gaa]------ 181 -----|---A CU|G-CGAA- UGGCU-CAUU AAAA-cagu- uau-aguu-- ----uauuug 241 auaa<----- ---------- ---------- ---------- ---------- --ucaaa-uu 301 u>ACAUGG-A UAACCGUGG( -U-AAUU)CU AGAGC-UAA- UACAUG---- ----(----) 361 ---------- -------(-- --)--|---- -- -acaucauuc -aa|guuucu gc|--CCC-A UCA--GCUUU C-GAUGGUA- 1141 GU(-GUAUUG G)ACU-ACCA U-|GGCGU-U CAC|GGGU-A A-CGGA|GGA -U-(UAGG-) 1201 GUU-CGAUU- CCG|GAGAGG G-AGCC(U-G AGAAAC)GGC UACC-ACAUC (UAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GU- AAAUU-ACCC -AAUCCU-G( ---acu--)C 1321 AGGG-A-GGU -|A|GUGACA AGAA-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AA CGGACCGAA- ---GC(---- ---cuau)GU ---UU-CGGG A-UUGCAAU- 1501 ------GAGU ----AGAAUU -UAAA--CCC C-----UU-U A-CGA-GGAU C---->AAUU 1561 GGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCCAA 1621 U-AGCGUA|U AUUAA--AGU UGUUG-CAG| UUA--AAAAG CUCGUAGUUG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 gauuuc-ugg g-agag-ugc caaugu--cg uc-uuguuga cugugc-agc ---------- 1801 ---------- -----gg-c- gcucuu-cca -uccuu---- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- --------cu guuaacguuu 2161 cugcuau--- ---------- ---------- ---uuauuua gugg------ ---------- 2221 ---ucucggg cucagaua-- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- --UUUUACCU UG-AGAA--A 2461 AUUAGAGUGU UC-CA-GG-C AGGCuc---- ---------- ---------- ---------- 2521 --------gc guc--g--gA AUACAU-UAG CAUGGAA|UA -AUAGAA-UA -GGACuUUAG 2581 uc-------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ----|-UCCU 2821 -UU-GUUGGU -UU-GA---- ------ggga UUG-AA-GUA A--UGAUUAA UA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGA|UAGU ---------- 3001 --UGGGGGCA UU|--AGUAU UUAAUUG-UC -AGAG(GU-G AAA---)UUC U-CGGA-U-U 3061 UGUUA-AAG- A-CUAACU-U AUGC(-GAAA )--GC|A--- UUUGCC-AA| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUG ---UUUUCAU -UAA-U|CA- A-GAACGAAA 3301 GUUAGGGGA- UCAAAGACG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CCUAG|UCU UA--ACC-AU AAACUAUGCC GAC|UA|--- 3421 --gggau-cg gag-g-c-g- ----(--cgc uuuacc---) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- -------u-c c-gu-ucg-g ca-ccuu--- ---------- ----auGA(- 3661 GAAA-)UCa- -aAGUC-uuu gGGU|-U|C- UGGGGGGAGU AU--GG-UC( --GCAA-)GG 3721 CUG-AAACUU -AAAG--GAA -UUG|AC-GG -AA-GGGCA- -CCAC-CAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --A-GU|-GG 4021 AGCUUGCG|G CU-CAAUUUG (ACUCAA-CA )CGGG--AAA ACUUACCAGG UC[cag-aca 4081 uagu-gagga uu-----gac aga(-uugau agc)------ ucuuu----- cuu-gauu-c 4141 uauggg---- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU-G-CAUG |GCC|GU-UC UUA|GUUGG- U|GGA(-GUG 4261 A-)UUUGUC- -UGG(UU-AA UU)CCGUUA- AC-GAACGAG ACCUU-AG|- ---------- 4321 ------(--- --)[CCU-AC UAACUAGuug a--cucguu- ---------- --gc-ua--- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- ---------- --agcgag-- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ----auuaa- cu-------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------U CUUAGAGG]- --|------- ---------- GACU-Uug-u -g-a(----- 5041 ---cuar-)a caca-A-GGA AGUU-UGAGG CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UG A|UGCC|CU- 5221 U-AGA-UGUC CUGG-GCCGC A-CGCGUGCU ACACU--G-A CGCAU----- ---------- 5281 ---(------ ----)[acag cgaguac--- ---------- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- ---------- ---------- 5401 -uuccca-gc ucc(gaga-) ggcagc---u gguaau-c-- agcaau]--- ---------- 5461 -------aug cgu-c-g--- UGAU-G-GGG AUAGAUCUU( UGGAAUUA)U AGAUCUUG-A 5521 ACGAGG-AAU U--CCUAGUA AG-CGC-AAG (-UCAUUAG- )CUUGC-G-C -UGAUUAAG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUCC-U-A CC-GAUUucG AG-UGAucc- 5641 ggu-gaac-- cau-uugga- cugc-gagg- uc-------- ---------- ---------- 5701 -------(cu cgu---)--- ---------- ---------- ---------- ---------- 5761 gacuuu-gug -gaaa-|auc -uaguaaacc au-auc-a-c uuag-AGGAA GG-AGAA-G- 5821 UCGUAACAAG GU-------- -----U-U-C CGUAGG(UGA A)CCUGCAGA AGGAUCA--- 5881 --agc~~~~~ ~~~~~~~~|| ||| // LOCUS P.tetraure 5903 bp RNA RNA 14-JAN-1985 DEFINITION Paramecium tetraurelia. ACCESSION No information KEYWORDS No information. SOURCE Paramecium tetraurelia. ORGANISM Paramecium tetraurelia. REFERENCE 1 (bases 1 to 1771) AUTHORS No information JOURNAL June 14 1985,Oct.10 1985 STANDARD No information COMMENTS Organism information Culture collection: ? Sequence information (bases 1 to 5903) Corresponding GenBank entry: X03772 Phylo:Eukaryotes,Protozoan BASE COUNT 492 a 326 c 450 g 485 t 4150 others ORIGIN 1 |--------- -----AAUCU GGU(UGA)UC CU|GCCAGA- A-GUCA-UAU --GCUUGUCU 61 UAAA|-GAUU AA-GCCAUGC A-UGUCU-AA GU|------- |--------- ----[----- 121 ---------- --------au aaauag---- ---------- uauac-agu- gaa]------ 181 -----|---A CU|G-CGAA- UGGCU-CAUU AAAA-cagu- uau-aguu-- ----uauuug 241 auag<----- ---------- ---------- ---------- ---------- ---ugcaaau 301 u>ACAUGG-A UAACCGUGG( -U-AAUU)CU AGAGC-UAA- UACAUG---- ---------- 361 ---------- ---------- ---------- -- -aaaucauuc -aa|guuucu gc|--CCU-A UCA--GCUUU C-GAUGGUA- 1141 GU(-GUAUUG G)ACU-ACCA U-|GGCAG-U CAC|GGGU-A A-CGGA|GAA -U-(UAGG-) 1201 GUU-CGAUU- CCG|GAGAGG G-AGCC(U-G AGAAAC)GGC UACC-ACAUC (UAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GU- AAAUU-ACCC -AAUCCC-G( ---auu--)C 1321 GGGG-A-GGU -|A|GUGACA AGAA-AU--- ---------- ---------- ---------- 1381 -----|---- ---------- ---------- ---------- ---------- ---------- 1441 --------AG CAACUCGUG- -CGG-(---- ---guuu)-C CGUUA-CGGG A-UUGCAAU- 1501 ------GAGA ----UAAGUC -CAAA--UCC G-----UA-A A-CGA-UUAA C---->AAUU 1561 GGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCCAA 1621 U-AGCGUA|U ACUUA--AGU UGUUG-CAG| UUA--AAAAG CUCGUAGUUG |--------- 1681 ---------- ---------- ---------- ---------- ---------- -|-------< 1741 aaauucgagu c-aguuacua guuggcucuu cgucaguuag uuaauu-gau ucuccgucua 1801 ca-au---cc cu-uuug-cg cuuuaggguu gcagcugggc gaguagaca- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- --AUUUACCU UG-AAAA--A 2461 AUUAGAGUGU UC-CA-GG-C AGGUcuu--- ---------- ---------- ---------- 2521 ---------C -GCC-G--GA AUACAU-UAG CAUGGAA|UA -AUGGAA-UA -GGACuUGGG 2581 uc-------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ----|---uu 2821 -uu-guuggu -uu-ua---- ---g----ga CUU-GA-GUA A--UGAUUAA UA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGA|CAGA ---------- 3001 --UGGGGGCA UU|--AGUAU UUAAUUG-UC -AGAG(GU-G AAA---)UUC U-UGGA-U-U 3061 UAUUA-AAG- A-CUAACU-U AUGC(-GAAA )--GC|A--- UUUGCC-AA| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUG ---UUUUCAU -UAA-U|CA- A-GAACGAAA 3301 GUUAGGGGA- UCAAAGACG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CGUAG|UCU UA--ACU-AU AAACUAUACC GAC|UC|--- 3421 --Gagau-cg gaa-g-g-gu aa--(----- uaua-----) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- --uuaguc-c c-uu-ucg-g ca-uCgu--- ---------- ----aaGA(- 3661 GAAA-)UCa- -AAGUC-uuu gGGU|-U|C- UGGGGGGAGU AU--GG-UC( --GCAA-)GG 3721 CUG-AAACUU -AAAG--GAA -UUG|AC-GG -AA-GGGCA- -CCAC-CAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --A-GU|-GG 4021 AGCCUGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--GAA ACUUACCAGG UC[aaa-aca 4081 ugga-uggga uu-----gac aga(-uugaa agc)------ ucuuu----- cuu-gauu-c 4141 uauggg---- -]-------- |--------- ---------- ---------- ---------- 4201 ---------- ---|UG-GU- GGU-G-CAUG |GCC|GU-UC UUA|GUUGG- U|GGA(-GUG 4261 A-)UUUGUC- -UGG(UU-AA UU)CCGAUA- AC-GAACGAG ACCUU-AA|- ---------- 4321 ---------- ---[CCU-GC UAACUAGuuu g--cuugu-- ---------- --ga-aca-- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- ---------- --acaggu-- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ----a-uaa- CU-------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------U CUUAGAGG]- --|------- ---------- GACU-Aug-u -a-u(----- 5041 ---guaa-)g ugca-U-GGA AGUU-UAAGG CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UG A|UGCC|CCU 5221 A-G-A-CGUC CUGG-GCCGC A-CGCGCGCU ACACU--G-A CACGU----- ---------- 5281 ---------- -----[ucag cgagcuu--- ---------- ---------- ---------- 5341 ---------- ---------- ---------- ---------- ---------- ---a------ 5401 uuuaccu-gu ccc(gaaa-) gggcac---g ggaaaucuu- guuagg]--- ---------- 5461 -------ACG UGU-CG-UG- CU---GGGGA -UAGAUCUU( UGCAAUUA)U AGAUCUUG-A 5521 ACGAGG-AAU U-CCU-UGUA AG-CAC-AGG (-UCAUCAG- )CCUGU-G-C -UGAAUACG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUCC-U-A CC-GAUuucG AG-UGAUgu- 5641 ggugaac--- uau-cugga- cugc-ggau- ggg------- ---------- ---------- 5701 -------(cu cga---)--- ---------- ---------- ---------- -------a-- 5761 ccauuu-gcg -ggaa-|guu -ucguaaacc uu-AUC-A-C UUAG-AGGAA GG-AGAA-G- 5821 UCGUAACAAG GU-------- -----U-U-C CGUAGG(UGA A)CCUGCGGA AGGAUCA--- 5881 -UUUA~~~~~ ~~~~~~~~|| ||| // LOCUS S.pustulat 5903 bp RNA RNA 27-JAN-1984 DEFINITION Stylonychia pustulata. ACCESSION No information KEYWORDS No information. SOURCE Stylonychia pustulata. ORGANISM Stylonychia pustulata. REFERENCE 1 (bases 1 to 1771) AUTHORS No information JOURNAL Dec 27 1984 STANDARD No information COMMENTS Organism information Culture collection: ? Sequence information (bases 1 to 5903) Corresponding GenBank entry: X03947,M14600 Phylo:Eukaryotes,Protozoan BASE COUNT 484 a 345 c 446 g 499 t 4129 others ORIGIN 1 |--------- ---GUAAUCU GGU(UGA)UC CU|GCCAGU- A-GUCA-UAU --GCUUGUCU 61 CAAA|-GACU AA-GCCAUGC A-UGUCU-AA GU|------- |-------(- ---)[----- 121 ---------- --------au aaaugu---u ---------- -au-a-cagu gaa]------ 181 -----|---A CU|G-CGAA- UGGCU-CAUU AAAa-cagu- uau-aguu-- ----uauuug 241 auaa<----- ---------- ---------- ---------- ---------- ---ucaaauu 301 u>ACAUGG-A UAACCGUGG( -U-AAUU)CU AGAGC-UAA- UACAUG---- ----(----) 361 ---------- -------(-- --)--|---- -- -acaucauuc -aa|guuucu gc|--CCC-A UCA--GCUUU C-GAUGGUA- 1141 GU(-GUAUUG G)ACU-ACCA U-|GGCUU-U CAC|GGGU-A A-CGGA|GGA -U-(UAGG-) 1201 GUU-CGAUU- CCG|GAGAGG G-AGCC(U-G AGAAAC)GGC UACC-ACAUC (UAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GU- AAAUU-ACCC -AAUCCU-G( ---acu--)C 1321 AGGG-A-GGU -|A|GUGACA AGAA-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AA CGGACCGAA- ---GC(---- ---cuau)GU ---UU-CGGG A-UUGCAAU- 1501 ------GAGU ----AGAAUU -UAAA--CCC C-----UU-U A-CGA-GGAU C---->AAUU 1561 GGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCCAA 1621 U-AGCAUA|U AUUAA--AGU UGUUG-CAG| UUA--AAAAG CUCGUAGUUG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 gauuucuggg a---ga-gcg ccaaug--u- cg-ucuuguu gacugu-gca ---------- 1801 ---------- ------g-c- ggcgcu-c-- -uuccau--- -------ccu uc-------- 1861 ug-------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- --------uu aaccuuucgg 2161 guauuua--- ---------- ---------- ----uuuacu cguc------ ---------- 2221 ----uggagc ucaga-ua-- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- --UUUUACCU UG-AGAA--A 2461 AUUAGAGUGU UC-CA-gG-C AGGCuc---- ---------- ---------- ---------- 2521 --------gc GCC--g--GA AUACAU-UAG CAUGGAA|UA -AUAGAA-UA -GGACuUUAG 2581 uc-------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ---U|--CCU 2821 -UU-GUUGGU -UU-GA---- ------ggga CUG-AA-GUA A--UGAUUAA UA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGA|UAGU ---------- 3001 --UGGGGGCA UU|--AGUAU UUAAUUG-UC -AGAG(GU-G AAA---)UUC U-CAGA-U-U 3061 UGUUA-AAG- A-CUAACU-U AUGC(-GAAA )--GC|A--- UUUGCC-AA| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUG ---UUUUCAU -UAA-U|CA- A-GAACGAAA 3301 GUUAGGGGA- UCAAAGACG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CCUAG|UCU UA--ACC-AU AAACUAUGCC GAC|UA|--- 3421 --gggau-ca gag-g-c-g- ----(--cgc uuuauc---) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- -------c-g c-cu-uug-g ca-ccuu--- ---------- ----auGA(- 3661 GAAA-)UCa- -aAGUC-uuu gGGU|-U|C- UGGGGGGAGU AU--GG-UC( --GCAA-)GG 3721 CUG-AAACUU -AAAG--GAA -UUG|AC-GG -AA-GGGCA- -CCAC-CAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --A-GU|-GG 4021 AGCUUGCG|G CU-CAAUUUG (ACUCAA-CA )CGGG--AAA ACUUACCAGG UC[cag-aca 4081 uagu-gagga uu-----gac aga(-uugau agc)------ ucuuu----- cuu-gauu-c 4141 uauggg---- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU-G-CAUG |GCC|GU-UC UUA|GUUGG- U|GGA(-GUG 4261 A-)UUUGUC- -UGG(UU-AA UU)CCGUUA- AC-GAACGAG ACCUU-AG|- ---------- 4321 ------(--- --)[CcU-aC UAACUAGucu a--uccguu- ---------- --gc-ua--- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- ---------- --agcgga-- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ----uuugA- CU-------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------U CUUAGAGG]- --|------- ---------- GACU-Uug-u -g-a(----- 5041 ---cuaa-)a caca-A-GGA AGuU-UGAGG CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UG A|UGCC|CU- 5221 U-AGA-UGUC CUGG-GCCGC A-CGCGUGCU ACACU--G-A CGCAU----- ---------- 5281 ---(------ ----)[acag cgaguac--- ---------- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- ---------- ---------- 5401 -uuccca-gc ucc(gaga-) ggcagc---u gguaau-c-- agcaau]--- ---------- 5461 -------aug cgu-c-g--- uGAU-G-GGG AUAGAUCUU( UGGAAUUA)U AGAUCUUG-A 5521 ACGAGG-AAU U--CCUAGUA AG-CGC-AAG (-UCAUUAC- )CUUGC-G-C -UGAUUAAG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUCC-U-A CC-GAUuucG AG-UGAucc- 5641 ggu-gaac-- cau-uugga- ccgc-gggg- cu-------- ---------- ---------- 5701 -------(cu ugc---)--- ---------- ---------- ---------- ---------- 5761 agucuu-gug -gaaa-|auc -uaguaaacc au-auc-a-c uuag-AGGAA GG-AGAA-G- 5821 UCGUAACAAG GU-------- -----U-U-C CGUAGG(UGA A)CCUGCGGA AGGAUCA--- 5881 --UUAA~~~~ ~~~~~~~~|| ||| // LOCUS T.australi 5903 bp RNA RNA 11-JAN-191 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: X56167 ID TASSRRNA standard; DNA; INV; 1752 BP. XX AC X56167; XX DT 29-MAY-1992 (Rel. 32, Created) DT 29-MAY-1992 (Rel. 32, Last updated, Version 1) XX DE T.australis gene for small subunit ribosomal RNA (16S like rRNA) XX KW ribosomal RNA; small subunit ribosomal RNA. XX OS Tetrahymena australis OC Eukaryota; Animalia; Protozoa; Ciliophora; Oligohymenophora; OC Hymenostomata; Hymenostomatida; Tetrahymenina; Tetrahymenidae. XX RN [1] RA Sogin M.L., Ingold A., Karlok M., Nielsen H., Enberg J.; RT "Phylogentic evidence for the acquisition of ribosomal RNA introns RT subsequent to the divergence of some of the major Tetrahymena RT groups"; RL EMBO J. 5:3625-3630(1986). XX RN [2] RP 1-1752 RA Sogin M.L.; RT ; RL Submitted (14-NOV-1990) to the EMBL Data Library by: RL M.L. Sogin, MARINE BIOLOGICAL LABORATORY, CENTRE FOR MOLECULAR RL EVOLUTION, WOODS HOLE MA 02543, USA XX CC *source: strain=ATCC 30831; CC *source: sub_strain=MGO (intron-); XX FH Key Location/Qualifiers FH XX SQ Sequence 1752 BP; 516 A; 316 C; 436 G; 484 T; 0 other; BASE COUNT 516 a 316 c 436 g 484 t 4151 others ORIGIN 1 |--------- -----AACCU GGU(UGA)UC CU|GCCAGU- U-A-CA-UAU --GCUUGUCU 61 UAAA|-UAUU AA-CCCAUGC A-UGUGC-CA GU|------- |-------(- ---)[----- 121 ---------- ---------u caguau---u ---------- -ga-a-cagc gaa]------ 181 -----|---A CU|G-CGAA- UGGCU-CAUU AAAa-cagu- uau-aguu-- ----uauuug 241 auaa<----- ---------- ---------- ---------- ---------- --uuaaagau 301 u>ACAUGG-A UAACCGAGC( -U-AAUU)GU UGGGC-UAA- UACAUG---- ----(----) 361 ---------- -------(-- --)--|---- -- -aaaucaucu -aa|guuucu gc|--CCU-A UCA--GCUCU C-GAUGGUA- 1141 GU(-GUAUUG G)ACU-ACCA U-|GGCAG-U CAC|GGGU-A A-CGGA|GAA -U-(UAGG-) 1201 GUU-CGAUU- CCG|GAGAAG G-AGCC(U-G AGAAAC)GGC UACU-ACAAC (UACG-)GUU 1261 CGGCAGC-A- ---------| GGG-AA-GA- AAAUU-GGCC -AAUCCU-A( ---auu--)C 1321 AGGG-A-GCC -|A|GUGACA AGAA-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AG CAAGCUGGG- -AAAC(---- ---uaa-)GU UUCUA-CGGC A-UUGAAAU- 1501 ------GAGA ----AAAGUG -UUAA--UCU C-----UU-A G-CGA-GGAA C---->AAUU 1561 GGAG|GG-CA A-GU-CAUGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCCAA 1621 U-AGCGUA|U AUUAA--AGU UGUUG-CAG| UUA--AAAAG CUCGUAGUUG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 aacuuc--ug u-ucag-guu cauuuc--ga (c--ucg)uc g-agug-aaa ---------- 1801 ---------- -----cu-g- gg-cau-acg -ucu------ ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- --------gc aaacuaaaau 2161 cggccuu--- ---------- ---------- ---cacuggu ucga------ ---------- 2221 ---cuuaggg aguaggca-- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- --UUUUACUG UG-AAAA--A 2461 AUUAGAGUGU UU-CA-GG-C AGGUuu---- ---------- ---------- ---------- 2521 --------ua -GCC-C--GA AUACAU-UAG CAUGGAA|UA -AUGGAA-UA -GGACuAAGU 2581 c--------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ----|-CAUU 2821 -UU-AUUGGU -UC-UU---- --------gg AUU-UG-GUA A--UGAUUAA UA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGA|CAGU ---------- 3001 --UGGGGGCA UU|--AGUAU UUAAUAG-UC -AGAG(GU-G AAA---)UUC U-UGGA-U-U 3061 UAUUA-AGG- A-CUAACU-A AUGC(-GAAA )--GC|A--- UUUGCC-AA| AG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUG ---UUUUCAU -UAA-U|CA- A-GAACGAAA 3301 GUUAGGGGA- UCAAAGACG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CGUAG|UCU UA--ACU-AU AAACUAUACC GAC|UC|--- 3421 --gggau-cg gcu-g-g-aa ----(----- uaua-----) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- -----ugu-c c-ag-ucg-g ca-ccgu--- ---------- ----auGA(- 3661 GAAA-)UCa- -aAGUC-uuu gGGU|-U|C- UGGGGGAAGU AU--GGUAC( --GCAA-)GU 3721 CUG-AAACUU -AAAG--GAA -UUG|AC-GG -AA-CAGCA- -C-AC-CAGA ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --A-GU|-GG 4021 AACCUGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--GAA ACUCACGAGC GC[aag-aca 4081 gaga-aggga uu-----gac aga(-uugag agc)------ ucuuu----- cuu-gauu-c 4141 uuuggg---- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU-G-CAUG |GCC|GU-UC UUA|GUUGG- U|GGA(-GUG 4261 A-)UUUGUC- -UGG(UU-AA UU)CCGUUA- AC-GAACGAG ACCUU-AA|- ---------- 4321 ------(--- --)[CCU-GC UAACUAGUcu g--ccugu-- ---------- --ga-aca-- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- ---------- --acaggc-- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ----u-guA- CU-------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------U CUUAGAGG]- --|------- ---------- GACU-Auu-g ug-c(----- 5041 --aagaa-)g ccaa-U-GGA AGUU-UAAGG CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UG A|UGCC|CC- 5221 U-AGA-CGUG CUCG-GCCGC A-CGCGCGUU ACAAU--G-A CUGGC----- ---------- 5281 ---(------ ----)[gcag aaaguau--- ---------- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- ---------- ---------- 5401 --uuccu-gu ccu(ggga-) agguac---g gguaau-cuu auuaau]--- ---------- 5461 -------acc agu-c-g--- UGUU-A-GGG AUAGUUCUU( UGGAAUUU)U GGAUCUUG-A 5521 ACGAGG-AAU U--UCUAGUA AG-UGC-AAG (-UCAUCAG- )CUUGC-G-U -UGAUUAUG- 5581 U-CCCUGCCG UU|UGUA-CA CACCGCCCGU CGCUUG-U-A GU-AAC---G AA-UGGucu- 5641 ggu-gaac-- cuu-cugga- cugu-gaca- ---------- ---------- ---------- 5701 -------(gc aa----)--- ---------- ---------- ---------- ---------- 5761 --uguu-acg -gaaa-|aau -aaguaaacc cu-acc-a-u uugg-AACAA CA-AGAA-G- 5821 UCGUAACAAG GU-------- -----A-U-C UGUAGG(UGA A)CCUGCAGA UGGAUCA--- 5881 --UUA~~~~~ ~~~~~~~~|| ||| // LOCUS T.borealis 5903 bp RNA RNA 11-JAN-191 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: M26359 ID TBUM731RR standard; DNA; INV; 1752 BP. XX AC M26359; XX DT 23-NOV-1989 (Rel. 21, Created) DT 02-MAR-1992 (Rel. 31, Last updated, Version 4) XX DE T. borealis small subunit ribosomal RNA gene for 16S-like RNA XX KW 16S ribosomal RNA homologue; ribosomal RNA small subunit. XX OS Tetrahymena borealis OC Eukaryota; Animalia; Protozoa; Ciliophora; Oligohymenophora; OC Hymenostomata; Hymenostomatida; Tetrahymenina; Tetrahymenidae. XX RN [1] RP 1-1752 RA Sogin M.L., Ingold A., Karlok M., Nielsen H., Enberg J.; RT "Phylogentic evidence for the acquisition of ribosomal RNA introns RT subsequent to the divergence of some of the major Tetrahymena RT groups"; RL EMBO J. 5:3625-3630(1986). XX RN [2] RP 1-1752 RA Sogin M.L.; RT ; RL Submitted (24-SEP-1990) to the EMBL Data Library by: RL Sogin M.L., Marine Biological Laboratory, Center for Molecular RL Evolution, Woods Hole, MA 02543, USA. XX CC *source: strain=UM731 (intron-).; XX CC See - and - for associated CC sequences. XX FH Key Location/Qualifiers FH XX SQ Sequence 1752 BP; 517 A; 318 C; 435 G; 482 T; 0 other; BASE COUNT 517 a 318 c 435 g 482 t 4151 others ORIGIN 1 |--------- -----AACCU GGU(UGA)UC CU|GCCAGU- U-A-CA-UAU --GCUUGUCU 61 UAAA|-UAUU AA-CCCAUGC A-UGUGC-CA GU|------- |-------(- ---)[----- 121 ---------- ---------u caguau---u ---------- -ga-a-cagc gaa]------ 181 -----|---A CU|G-CGAA- UGGCU-CAUU AAAa-cagu- uau-aguu-- ----uauuug 241 auaa<----- ---------- ---------- ---------- ---------- --uuaaagau 301 u>ACAUGG-A UAACCGAGC( -U-AAUU)GU UGGGC-UAA- UACAUG---- ----(----) 361 ---------- -------(-- --)--|---- -- -aaaucaucu -aa|guuucu gc|--CCU-A UCA--GCUCU C-GAUGGUA- 1141 GU(-GUAUUG G)ACU-ACCA U-|GGCAG-U CAC|GGGU-A A-CGGA|GAA -U-(UAGG-) 1201 GUU-CGAUU- CCG|GAGAAG G-AGCC(U-G AGAAAC)GGC UACU-ACAAC (UACG-)GUU 1261 CGGCAGC-A- ---------| GGG-AA-GA- AAAUU-GGCC -AAUCCU-A( ---auu--)C 1321 AGGG-A-GCC -|A|GUGACA AGAA-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AG CAAGCUGGG- -AAAC(---- ---cua-)GU UUCUA-CGGC A-UUGAAAU- 1501 ------GAGA ----AAAGUG -UUAA--UCU C-----UU-A G-CGA-GGAA C---->AAUU 1561 GGAG|GG-CA A-GU-CAUGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCCAA 1621 U-AGCGUA|U AUUAA--AGU UGUUG-CAG| UUA--AAAAG CUCGUAGUUG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 aacuuc--ug u-ucag-guu cauuuc--ga (c--ucg)uc g-ugug-aaa ---------- 1801 ---------- -----cu-g- ga-cau-acg -uuu------ ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- --------gc aaacuaaaau 2161 cggccuu--- ---------- ---------- ---cacuggu ucga------ ---------- 2221 ---cuuaggg aguaaaca-- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- --UUUUACUG UG-AAAA--A 2461 AUUAGAGUGU UC-CA-GG-C AGGUuu---- ---------- ---------- ---------- 2521 --------ua -GCC-C--GA AUACAU-UAG CAUGGAA|UA -AUGGAA-UA -GGACuAAGU 2581 c--------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ----|-CAUU 2821 -UU-AUUGGU -UC-UU---- --------gg AUU-UG-GUA A--UGAUUAA UA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGA|CAGU ---------- 3001 --UGGGGGCA UU|--AGUAU UUAAUAG-UC -AGAG(GU-G AAA---)UUC U-UGGA-U-U 3061 UAUUA-AGG- A-CUAACU-A AUGC(-GAAA )--GC|A--- UUUGCC-AA| AG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUG ---UUUUCAU -UAA-U|CA- A-GAACGAAA 3301 GUUAGGGGA- UCAAAGACG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CGUAG|UCU UA--ACU-AU AAACUAUACC GAC|UC|--- 3421 --gggau-cg gcu-g-g-aa ----(----- uaaa-----) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- -----ugu-c c-ag-ucg-g ca-ccgu--- ---------- ----auGA(- 3661 GAAA-)UCa- -aAGUC-uuu gGGU|-U|C- UGGGGGAAGU AU--GGUAC( --GCAA-)GU 3721 CUG-AAACUU -AAAG--GAA -UUG|AC-GG -AA-CAGCA- -C-AC-CAGA ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --A-GU|-GG 4021 AACCUGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--GAA ACUCACGAGC GC[aag-aca 4081 gaga-aggga uu-----gac aga(-uugag agc)------ ucuuu----- cuu-gauu-c 4141 uuuggg---- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU-G-CAUG |GCC|GU-UC UUA|GUUGG- U|GGA(-GUG 4261 A-)UUUGUC- -UGG(UU-AA UU)CCGUUA- AC-GAACGAG ACCUU-AA|- ---------- 4321 ------(--- --)[CCU-GC UAACUAGUcu g--cuugu-- ---------- --ga-aca-- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- ---------- --acaggu-- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ----u-guA- CU-------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------U CUUAGAGG]- --|------- ---------- GACU-Auu-g ug-c(----- 5041 --aagaa-)g ccaa-U-GGA AGUU-UAAGG CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UG A|UGCC|CC- 5221 U-AGA-CGUG CUCG-GCCGC A-CGCGCGUU ACAAU--G-A CUGGC----- ---------- 5281 ---(------ ----)[gcag aaaguau--- ---------- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- ---------- ---------- 5401 --uuccu-gu ccu(ggga-) agguac---g gguaau-cuu auuaau]--- ---------- 5461 -------acc agu-c-g--- UGUU-A-GGG AUAGUUCUU( UGGAAUUG)U GGAUCUUG-A 5521 ACGAGG-AAU U--UCUAGUA AG-UGC-AAG (-UCAUCAG- )CUUGC-G-U -UGAUUAUG- 5581 U-CCCUGCCG UU|UGUA-CA CACCGCCCGU CGCUUG-U-A GU-AAC---G AA-UGGucu- 5641 ggu-gaac-- cuu-cugga- cugc-ggua- ---------- ---------- ---------- 5701 -------(gc aa----)--- ---------- ---------- ---------- ---------- 5761 --uacu-gcg -gaaa-|aau -aaguaaacc cu-acc-a-u uugg-AACAA CA-AGAA-G- 5821 UCGUAACAAG GU-------- -----A-U-C UGUAGG(UGA A)CCUGCAGA UGGAUCA--- 5881 --UUA~~~~~ ~~~~~~~~|| ||| // LOCUS T.canadens 5903 bp RNA RNA 11-JAN-191 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: X56170 ID TCSSRRNAB standard; DNA; INV; 1752 BP. XX AC X56170; XX DT 29-MAY-1992 (Rel. 32, Created) DT 29-MAY-1992 (Rel. 32, Last updated, Version 1) XX DE T.canadensis gene for small subunit ribosomal RNA (16S like rRNA) XX KW ribosomal RNA; small subunit ribosomal RNA. XX OS Tetrahymena canadensis OC Eukaryota; Animalia; Protozoa; Ciliophora; Oligohymenophora; OC Hymenostomata; Hymenostomatida; Tetrahymenina; Tetrahymenidae. XX RN [1] RA Sogin M.L., Ingold A., Karlok M., Nielsen H., Enberg J.; RT "Phylogentic evidence for the acquisition of ribosomal RNA introns RT subsequent to the divergence of some of the major Tetrahymena RT groups"; RL EMBO J. 5:3625-3630(1986). XX RN [2] RP 1-1752 RA Sogin M.L.; RT ; RL Submitted (14-NOV-1990) to the EMBL Data Library by: RL M.L. Sogin, MARINE BIOLOGICAL LABORATORY, CENTRE FOR MOLECULAR RL EVOLUTION, WOODS HOLE MA 02543, USA XX CC *source: strain=ATCC 30368; CC *source: sub_strain=UM 1215 (intron-); XX FH Key Location/Qualifiers FH XX SQ Sequence 1752 BP; 517 A; 318 C; 435 G; 482 T; 0 other; BASE COUNT 517 a 318 c 435 g 482 t 4151 others ORIGIN 1 |--------- -----AACCU GGU(UGA)UC CU|GCCAGU- U-A-CA-UAU --GCUUGUCU 61 UAAA|-UAUU AA-CCCAUGC A-UGUGC-CA GU|------- |-------(- ---)[----- 121 ---------- ---------u caguau---u ---------- -ga-a-cagc gaa]------ 181 -----|---A CU|G-CGAA- UGGCU-CAUU AAAa-cagu- uau-aguu-- ----uauuug 241 auaa<----- ---------- ---------- ---------- ---------- --uuaaagau 301 u>ACAUGG-A UAACCGAGC( -U-AAUU)GU UGGGC-UAA- UACAUG---- ----(----) 361 ---------- -------(-- --)--|---- -- -aaaucaucu -aa|guuucu gc|--CCU-A UCA--GCUCU C-GAUGGUA- 1141 GU(-GUAUUG G)ACU-ACCA U-|GGCAG-U CAC|GGGU-A A-CGGA|GAA -U-(UAGG-) 1201 GUU-CGAUU- CCG|GAGAAG G-AGCC(U-G AGAAAC)GGC UACU-ACAAC (UACG-)GUU 1261 CGGCAGC-A- ---------| GGG-AA-GA- AAAUU-GGCC -AAUCCU-A( ---auu--)C 1321 AGGG-A-GCC -|A|GUGACA AGAA-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AG CAAGCUGGG- -AAAC(---- ---cua-)GU UUCUA-CGGC A-UUGAAAU- 1501 ------GAGA ----AAAGUG -UUAA--UCU C-----UU-A G-CGA-GGAA C---->AAUU 1561 GGAG|GG-CA A-GU-CAUGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCCAA 1621 U-AGCGUA|U AUUAA--AGU UGUUG-CAG| UUA--AAAAG CUCGUAGUUG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 aacuuc--ug u-ucag-guu cauuuc--ga (c--ucg)uc g-ugug-aaa ---------- 1801 ---------- -----cu-g- ga-cau-acg -uuu------ ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- --------gc aaacuaaaau 2161 cggccuu--- ---------- ---------- ---cacuggu ucga------ ---------- 2221 ---cuuaggg aguaaaca-- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- --UUUUACUG UG-AAAA--A 2461 AUUAGAGUGU UC-CA-GG-C AGGUuu---- ---------- ---------- ---------- 2521 --------ua -GCC-C--GA AUACAU-UAG CAUGGAA|UA -AUGGAA-UA -GGACuAAGU 2581 c--------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ----|-CAUU 2821 -UU-AUUGGU -UC-UU---- --------gg AUU-UG-GUA A--UGAUUAA UA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGA|CAGU ---------- 3001 --UGGGGGCA UU|--AGUAU UUAAUAG-UC -AGAG(GU-G AAA---)UUC U-UGGA-U-U 3061 UAUUA-AGG- A-CUAACU-A AUGC(-GAAA )--GC|A--- UUUGCC-AA| AG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUG ---UUUUCAU -UAA-U|CA- A-GAACGAAA 3301 GUUAGGGGA- UCAAAGACG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CGUAG|UCU UA--ACU-AU AAACUAUACC GAC|UC|--- 3421 --gggau-cg gcu-g-g-aa ----(----- uaaa-----) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- -----ugu-c c-ag-ucg-g ca-ccgu--- ---------- ----auGA(- 3661 GAAA-)UCa- -aAGUC-uuu gGGU|-U|C- UGGGGGAAGU AU--GGUAC( --GCAA-)GU 3721 CUG-AAACUU -AAAG--GAA -UUG|AC-GG -AA-CAGCA- -C-AC-CAGA ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --A-GU|-GG 4021 AACCUGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--GAA ACUCACGAGC GC[aag-aca 4081 gaga-aggga uu-----gac aga(-uugag agc)------ ucuuu----- cuu-gauu-c 4141 uuuggg---- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU-G-CAUG |GCC|GU-UC UUA|GUUGG- U|GGA(-GUG 4261 A-)UUUGUC- -UGG(UU-AA UU)CCGUUA- AC-GAACGAG ACCUU-AA|- ---------- 4321 ------(--- --)[CCU-GC UAACUAGUcu g--cuugu-- ---------- --ga-aca-- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- ---------- --acaggu-- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ----u-guA- CU-------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------U CUUAGAGG]- --|------- ---------- GACU-Auu-g ug-c(----- 5041 --aagaa-)g ccaa-U-GGA AGUU-UAAGG CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UG A|UGCC|CC- 5221 U-AGA-CGUG CUCG-GCCGC A-CGCGCGUU ACAAU--G-A CUGGC----- ---------- 5281 ---(------ ----)[gcag aaaguau--- ---------- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- ---------- ---------- 5401 --uuccu-gu ccu(ggga-) agguac---g gguaau-cuu auuaau]--- ---------- 5461 -------acc agu-c-g--- UGUU-A-GGG AUAGUUCUU( UGGAAUUG)U GGAUCUUG-A 5521 ACGAGG-AAU U--UCUAGUA AG-UGC-AAG (-UCAUCAG- )CUUGC-G-U -UGAUUAUG- 5581 U-CCCUGCCG UU|UGUA-CA CACCGCCCGU CGCUUG-U-A GU-AAC---G AA-UGGucu- 5641 ggu-gaac-- cuu-cugga- cugc-ggua- ---------- ---------- ---------- 5701 -------(gc aa----)--- ---------- ---------- ---------- ---------- 5761 --uacu-gcg -gaaa-|aau -aaguaaacc cu-acc-a-u uugg-AACAA CA-AGAA-G- 5821 UCGUAACAAG GU-------- -----A-U-C UGUAGG(UGA A)CCUGCAGA UGGAUCA--- 5881 --UUA~~~~~ ~~~~~~~~|| ||| // LOCUS T.capricor 5903 bp RNA RNA 11-JAN-191 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: X56172 ID TCSSRRNAC standard; DNA; INV; 1752 BP. XX AC X56172; XX DT 29-MAY-1992 (Rel. 32, Created) DT 29-MAY-1992 (Rel. 32, Last updated, Version 1) XX DE T.capricornis gene for small subunit ribosomal RNA (16S like rRNA) XX KW ribosomal RNA; small subunit ribosomal RNA. XX OS Tetrahymena capricornis OC Eukaryota; Animalia; Protozoa; Ciliophora; Oligohymenophora; OC Hymenostomata; Hymenostomatida; Tetrahymenina; Tetrahymenidae. XX RN [1] RA Sogin M.L., Ingold A., Karlok M., Nielsen H., Enberg J.; RT "Phylogentic evidence for the acquisition of ribosomal RNA introns RT subsequent to the divergence of some of the major Tetrahymena RT groups"; RL EMBO J. 5:3625-3630(1986). XX RN [2] RP 1-1752 RA Sogin M.L.; RT ; RL Submitted (14-NOV-1990) to the EMBL Data Library by: RL M.L. Sogin, MARINE BIOLOGICAL LABORATORY, CENTRE FOR MOLECULAR RL EVOLUTION, WOODS HOLE MA 02543, USA XX CC *source: strain=ATCC 30291; CC *source: sub_strain=AU-f1-1(intron-); XX FH Key Location/Qualifiers FH XX SQ Sequence 1752 BP; 517 A; 316 C; 435 G; 484 T; 0 other; BASE COUNT 517 a 316 c 435 g 484 t 4151 others ORIGIN 1 |--------- -----AACCU GGU(UGA)UC CU|GCCAGU- U-A-CA-UAU --GCUUGUCU 61 UAAA|-UAUU AA-CCCAUGC A-UGUGC-CA GU|------- |-------(- ---)[----- 121 ---------- ---------u caguau---u ---------- -ga-a-cagc gaa]------ 181 -----|---A CU|G-CGAA- UGGCU-CAUU AAAa-cagu- uau-aguu-- ----uauuug 241 auaa<----- ---------- ---------- ---------- ---------- --uuaaagau 301 u>ACAUGG-A UAACCGAGC( -U-AAUU)GU UGGGC-UAA- UACAUG---- ----(----) 361 ---------- -------(-- --)--|---- -- -aaaucaucu -aa|guuucu gc|--CCU-A UCA--GCUCU C-GAUGGUA- 1141 GU(-GUAUUG G)ACU-ACCA U-|GGCAG-U CAC|GGGU-A A-CGGA|GAA -U-(UAGG-) 1201 GUU-CGAUU- CCG|GAGAAG G-AGCC(U-G AGAAAC)GGC UACU-ACAAC (UACG-)GUU 1261 CGGCAGC-A- ---------| GGG-AA-GA- AAAUU-GGCC -AAUCCU-A( ---auu--)C 1321 AGGG-A-GCC -|A|GUGACA AGAA-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AG CAAGCUGGG- -AAAC(---- ---uaa-)GU UUCUA-CGGC A-UUGAAAU- 1501 ------GAGA ----AAAGUG -UUAA--UCU C-----UU-A G-CGA-GGAA C---->AAUU 1561 GGAG|GG-CA A-GU-CAUGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCCAA 1621 U-AGCGUA|U AUUAA--AGU UGUUG-CAG| UUA--AAAAG CUCGUAGUUG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 aacuuc--ug u-ucag-guu cauuuc--ga (c--ucg)uc g-agug-aaa ---------- 1801 ---------- -----cu-g- gg-cau-acg -ucu------ ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- --------gc aaacuaaaau 2161 cggccuu--- ---------- ---------- ---cacuggu ucga------ ---------- 2221 ---cuuaggg aguaggca-- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- --UUUUACUG UG-AAAA--A 2461 AUUAGAGUGU UU-CA-GG-C AGGUuu---- ---------- ---------- ---------- 2521 --------ua -GCC-C--GA AUACAU-UAG CAUGGAA|UA -AUGGAA-UA -GGACuAAGU 2581 c--------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ----|-CAUU 2821 -UU-AUUGGU -UC-UU---- --------gg AUU-UG-GUA A--UGAUUAA UA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGA|CAGU ---------- 3001 --UGGGGGCA UU|--AGUAU UUAAUAG-UC -AGAG(GU-G AAA---)UUC U-UGGA-U-U 3061 UAUUA-AGG- A-CUAACU-A AUGC(-GAAA )--GC|A--- UUUGCC-AA| AG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUG ---UUUUCAU -UAA-U|CA- A-GAACGAAA 3301 GUUAGGGGA- UCAAAGACG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CGUAG|UCU UA--ACU-AU AAACUAUACC GAC|UC|--- 3421 --gggau-cg gcu-g-g-aa ----(----- uaua-----) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- -----ugu-c c-ag-ucg-g ca-ccgu--- ---------- ----auGA(- 3661 GAAA-)UCa- -aAGUC-uuu gGGU|-U|C- UGGGGGAAGU AU--GGUAC( --GCAA-)GU 3721 CUG-AAACUU -AAAG--GAA -UUG|AC-GG -AA-CAGCA- -C-AC-CAGA ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --A-GU|-GG 4021 AACCUGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--GAA ACUCACGAGC GC[aag-aca 4081 gaga-aggga uu-----gac aga(-uugag agc)------ ucuuu----- cuu-gauu-c 4141 uuuggg---- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU-G-CAUG |GCC|GU-UC UUA|GUUGG- U|GGA(-GUG 4261 A-)UUUGUC- -UGG(UU-AA UU)CCGUUA- AC-GAACGAG ACCUU-AA|- ---------- 4321 ------(--- --)[CCU-GC UAACUAGUcu g--ucugu-- ---------- --ga-aca-- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- ---------- --acagau-- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ----u-guA- CU-------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------U CUUAGAGG]- --|------- ---------- GACU-Auu-g ug-c(----- 5041 --aagaa-)g ccaa-U-GGA AGUU-UAAGG CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UG A|UGCC|CC- 5221 U-AGA-CGUG CUCG-GCCGC A-CGCGCGUU ACAAU--G-A CUGGC----- ---------- 5281 ---(------ ----)[gcag aaaguau--- ---------- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- ---------- ---------- 5401 --uuccu-gu ccu(ggga-) agguac---g gguaau-cuu auuaau]--- ---------- 5461 -------acc agu-c-g--- UGUU-A-GGG AUAGUUCUU( UGGAAUUU)U GGAUCUUG-A 5521 ACGAGG-AAU U--UCUAGUA AG-UGC-AAG (-UCAUCAG- )CUUGC-G-U -UGAUUAUG- 5581 U-CCCUGCCG UU|UGUA-CA CACCGCCCGU CGCUUG-U-A GU-AAC---G AA-UGGucu- 5641 ggu-gaac-- cuu-cugga- cugu-gaca- ---------- ---------- ---------- 5701 -------(gc aa----)--- ---------- ---------- ---------- ---------- 5761 --uguu-acg -gaaa-|aau -aaguaaacc cu-acc-a-u uugg-AACAA CA-AGAA-G- 5821 UCGUAACAAG GU-------- -----A-U-C UGUAGG(UGA A)CCUGCAGA UGGAUCA--- 5881 --UUA~~~~~ ~~~~~~~~|| ||| // LOCUS T.hegewisc 5903 bp RNA RNA 11-JAN-191 DEFINITION Tetrahymena hegewishii subsp. was Tetrahymena hegewischi. ACCESSION No information KEYWORDS No information. SOURCE Tetrahymena hegewishii subsp. was Tetrahymena hegewischi. ORGANISM Tetrahymena hegewishii. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: X56166 ID THSSRRNA standard; DNA; INV; 1752 BP. XX AC X56166; XX DT 29-MAY-1992 (Rel. 32, Created) DT 29-MAY-1992 (Rel. 32, Last updated, Version 1) XX DE T.hegewischi gene for small subunit ribosomal RNA (16S-like rRNA) XX KW ribosomal RNA; small subunit ribosomal RNA. XX OS Tetrahymena hegewischi OC Eukaryota; Animalia; Protozoa; Ciliophora; Oligohymenophora; OC Hymenostomata; Hymenostomatida; Tetrahymenina; Tetrahymenidae. XX RN [1] RA Sogin M.L., Ingold A., Karlok M., Nielsen H., Enberg J.; RT "Phylogentic evidence for the acquisition of ribosomal RNA introns RT subsequent to the divergence of some of the major Tetrahymena RT groups"; RL EMBO J. 5:3625-3630(1986). XX RN [2] RP 1-1752 RA Sogin M.L.; RT ; RL Submitted (14-NOV-1990) to the EMBL Data Library by: RL M.L. Sogin, MARINE BIOLOGICAL LABORATORY, CENTRE FOR MOLECULAR RL EVOLUTION, WOODS HOLE MA 02543, USA XX CC *source: strain=ATCC 30823; CC *source: sub_strain=KP7 (intron-); XX FH Key Location/Qualifiers FH XX SQ Sequence 1752 BP; 517 A; 317 C; 435 G; 483 T; 0 other; BASE COUNT 517 a 317 c 435 g 483 t 4151 others ORIGIN 1 |--------- -----AACCU GGU(UGA)UC CU|GCCAGU- U-A-CA-UAU --GCUUGUCU 61 UAAA|-UAUU AA-CCCAUGC A-UGUGC-CA GU|------- |-------(- ---)[----- 121 ---------- ---------u caguau---u ---------- -ga-a-cagc gaa]------ 181 -----|---A CU|G-CGAA- UGGCU-CAUU AAAa-cagu- uau-aguu-- ----uauuug 241 auaa<----- ---------- ---------- ---------- ---------- --uuaaagau 301 u>ACAUGG-A UAACCGAGC( -U-AAUU)GU UGGGC-UAA- UACAUG---- ----(----) 361 ---------- -------(-- --)--|---- -- -aaaucaucu -aa|guuucu gc|--CCU-A UCA--GCUCU C-GAUGGUA- 1141 GU(-GUAUUG G)ACU-ACCA U-|GGCAG-U CAC|GGGU-A A-CGGA|GAA -U-(UAGG-) 1201 GUU-CGAUU- CCG|GAGAAG G-AGCC(U-G AGAAAC)GGC UACU-ACAAC (UACG-)GUU 1261 CGGCAGC-A- ---------| GGG-AA-GA- AAAUU-GGCC -AAUCCU-A( ---auu--)C 1321 AGGG-A-GCC -|A|GUGACA AGAA-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AG CAAGCUGGA- -GAAC(---- ---uaa-)GU UCUUA-CGGC A-UUGAAAU- 1501 ------GAGA ----AAAGUG -UUAA--UCU C-----UU-A G-CGA-GGAA C---->AAUU 1561 GGAG|GG-CA A-GU-CAUGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCCAA 1621 U-AGCGUA|U AUUAA--AGU UGUUG-CAG| UUA--AAAAG CUCGUAGUUG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 aacuuc--ug u-ucag-guu cauuuc--ga (c--ucg)uc g-agug-aaa ---------- 1801 ---------- -----cu-g- gg-cau-acg -ucu------ ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- --------gc aaacuaaaau 2161 cggccuu--- ---------- ---------- ---cacuggu ucga------ ---------- 2221 ---cuuaggg aguaggca-- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- --UUUUACUG UG-AAAA--A 2461 AUUAGAGUGU UU-CA-GG-C AGGUuu---- ---------- ---------- ---------- 2521 --------ua -GCC-C--GA AUACAU-UAG CAUGGAA|UA -AUGGAA-UA -GGACuAAGU 2581 c--------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ----|-CAUU 2821 -UU-AUUGGU -UC-UU---- --------gg AUU-UG-GUA A--UGAUUAA UA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGA|CAGU ---------- 3001 --UGGGGGCA UU|--AGUAU UUAAUAG-UC -AGAG(GU-G AAA---)UUC U-UGGA-U-U 3061 UAUUA-AGG- A-CUAACU-A AUGC(-GAAA )--GC|A--- UUUGCC-AA| AG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUG ---UUUUCAU -UAA-U|CA- A-GAACGAAA 3301 GUUAGGGGA- UCAAAGACG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CGUAG|UCU UA--ACU-AU AAACUAUACC GAC|UC|--- 3421 --gggau-cg gcu-g-g-aa ----(----- uaua-----) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- -----ugu-c c-ag-ucg-g ca-ccgu--- ---------- ----auGA(- 3661 GAAA-)UCa- -aAGUC-uuu gGGU|-U|C- UGGGGGAAGU AU--GGUAC( --GCAA-)GU 3721 CUG-AAACUU -AAAG--GAA -UUG|AC-GG -AA-CAGCA- -C-AC-CAGA ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --A-GU|-GG 4021 AACCUGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--GAA ACUCACGAGC GC[aag-aca 4081 gaga-aggga uu-----gac aga(-uugag agc)------ ucuuu----- cuu-gauu-c 4141 uuuggg---- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU-G-CAUG |GCC|GU-UC UUA|GUUGG- U|GGA(-GUG 4261 A-)UUUGUC- -UGG(UU-AA UU)CCGUUA- AC-GAACGAG ACCUU-AA|- ---------- 4321 ------(--- --)[CCU-GC UAACUAGUcu a--ccugu-- ---------- --ga-aca-- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- ---------- --acaggu-- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ----u-guA- CU-------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------U CUUAGAGG]- --|------- ---------- GACU-Auu-g ug-c(----- 5041 --aagaa-)g ccaa-U-GGA AGUU-UAAGG CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UG A|UGCC|CC- 5221 U-AGA-CGUG CUCG-GCCGC A-CGCGCGUU ACAAU--G-A CUGGC----- ---------- 5281 ---(------ ----)[gcag aaaguau--- ---------- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- ---------- ---------- 5401 --uuccu-gu ccu(ggga-) agguac---g gguaau-cuu auuaau]--- ---------- 5461 -------acc agu-c-g--- UGUU-A-GGG AUAGUUCUU( UGGAAUUU)U GGAUCUUG-A 5521 ACGAGG-AAU U--UCUAGUA AG-UGC-AAG (-UCAUCAG- )CUUGC-G-U -UGAUUAUG- 5581 U-CCCUGCCG UU|UGUA-CA CACCGCCCGU CGCUUG-U-A GU-AAC---G AA-UGGucu- 5641 ggu-gaac-- cuu-cugga- cugu-gaca- ---------- ---------- ---------- 5701 -------(gc aa----)--- ---------- ---------- ---------- ---------- 5761 --uguu-acg -gaaa-|aau -aaguaaacc cu-acc-a-u uugg-AACAA CA-AGAA-G- 5821 UCGUAACAAG GU-------- -----A-U-C UGUAGG(UGA A)CCUGCAGA UGGAUCA--- 5881 --UUA~~~~~ ~~~~~~~~|| ||| // LOCUS T.hyperang 5903 bp RNA RNA 11-JAN-191 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: X56173 ID THSSRRNAB standard; DNA; INV; 1752 BP. XX AC X56173; XX DT 29-MAY-1992 (Rel. 32, Created) DT 29-MAY-1992 (Rel. 32, Last updated, Version 1) XX DE T.hyperangularis gene for small subunit ribosomal RNA (16S like DE rRNA) XX KW ribosomal RNA; small subunit ribosomal RNA. XX OS Tetrahymena hyperangularis OC Eukaryota; Animalia; Protozoa; Ciliophora; Oligohymenophora; OC Hymenostomata; Hymenostomatida; Tetrahymenina; Tetrahymenidae. XX RN [1] RA Sogin M.L., Ingold A., Karlok M., Nielsen H., Enberg J.; RT "Phylogentic evidence for the acquisition of ribosomal RNA introns RT subsequent to the divergence of some of the major Tetrahymena RT groups"; RL EMBO J. 5:3625-3630(1986). XX RN [2] RP 1-1752 RA Sogin M.L.; RT ; RL Submitted (14-NOV-1990) to the EMBL Data Library by: RL M.L. Sogin, MARINE BIOLOGICAL LABORATORY, CENTRE FOR MOLECULAR RL EVOLUTION, WOODS HOLE MA 02543, USA XX CC *source: strain=ATCC 30273; CC *source: sub_strain=EN 101 (intron+); XX FH Key Location/Qualifiers FH XX SQ Sequence 1752 BP; 517 A; 314 C; 435 G; 486 T; 0 other; BASE COUNT 517 a 314 c 435 g 486 t 4151 others ORIGIN 1 |--------- -----AACCU GGU(UGA)UC CU|GCCAGU- U-A-CA-UAU --GCUUGUCU 61 UAAA|-UAUU AA-CCCAUGC A-UGUGC-CA GU|------- |-------(- ---)[----- 121 ---------- ---------u caguau---u ---------- -ga-a-cagc gaa]------ 181 -----|---A CU|G-CGAA- UGGCU-CAUU AAAa-cagu- uau-aguu-- ----uauuug 241 auaa<----- ---------- ---------- ---------- ---------- --uuaaagau 301 u>ACAUGG-A UAACCGAGC( -U-AAUU)GU UGGGC-UAA- UACAUG---- ----(----) 361 ---------- -------(-- --)--|---- -- -aaaucaucu -aa|guuucu gc|--CCU-A UCA--GCUCU C-GAUGGUA- 1141 GU(-GUAUUG G)ACU-ACCA U-|GGCAG-U CAC|GGGU-A A-CGGA|GAA -U-(UAGG-) 1201 GUU-CGAUU- CCG|GAGAAG G-AGCC(U-G AGAAAC)GGC UACU-ACAAC (UACG-)GUU 1261 CGGCAGC-A- ---------| GGG-AA-GA- AAAUU-GGCC -AAUCCU-A( ---auu--)C 1321 AGGG-A-GCC -|A|GUGACA AGAA-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AG CAAGCUGGG- -AAAC(---- ---uaa-)GU UUCUA-CGGC A-UUGAAAU- 1501 ------GAGA ----AAAGUG -UUAA--UCU C-----UU-A G-CGA-GGAA C---->AAUU 1561 GGAG|GG-CA A-GU-CAUGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCCAA 1621 U-AGCGUA|U AUUAA--AGU UGUUG-CAG| UUA--AAAAG CUCGUAGUUG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 aacuuc--ug u-ucag-guu cauuuc--ga (c--ucg)uc g-agug-aaa ---------- 1801 ---------- -----cu-g- gg-cau-acg -ucu------ ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- --------gc aaacuaaaau 2161 cggccuu--- ---------- ---------- ---cacuggu ucga------ ---------- 2221 ---cuuaggg aguaggca-- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- --UUUUACUG UG-AAAA--A 2461 AUUAGAGUGU UU-CA-GG-C AGGUuu---- ---------- ---------- ---------- 2521 --------ua -GCC-C--GA AUACAU-UAG CAUGGAA|UA -AUGGAA-UA -GGACuAAGU 2581 c--------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ----|-CAUU 2821 -UU-AUUGGU -UC-UU---- --------gg AUU-UG-GUA A--UGAUUAA UA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGA|CAGU ---------- 3001 --UGGGGGCA UU|--AGUAU UUAAUAG-UC -AGAG(GU-G AAA---)UUC U-UGGA-U-U 3061 UAUUA-AGG- A-CUAACU-A AUGC(-GAAA )--GC|A--- UUUGCC-AA| AG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUG ---UUUUCAU -UAA-U|CA- A-GAACGAAA 3301 GUUAGGGGA- UCAAAGACG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CGUAG|UCU UA--ACU-AU AAACUAUACC GAC|UC|--- 3421 --gggau-cg gcu-g-g-aa ----(----- uaua-----) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- -----ugu-c c-ag-ucg-g ca-ccgu--- ---------- ----auGA(- 3661 GAAA-)UCa- -aAGUC-uuu gGGU|-U|C- UGGGGGAAGU AU--GGUAC( --GCAA-)GU 3721 CUG-AAACUU -AAAG--GAA -UUG|AC-GG -AA-CAGCA- -C-AC-CAGA ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --A-GU|-GG 4021 AACCUGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--GAA ACUCACGAGC GC[aag-aca 4081 gaga-aggga uu-----gac aga(-uugag agc)------ ucuuu----- cuu-gauu-c 4141 uuuggg---- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU-G-CAUG |GCC|GU-UC UUA|GUUGG- U|GGA(-GUG 4261 A-)UUUGUC- -UGG(UU-AA UU)CCGUUA- AC-GAACGAG ACCUU-AA|- ---------- 4321 ------(--- --)[CCU-GC UAACUAGUcu g--ucugu-- ---------- --ga-aua-- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- ---------- --acagau-- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ----u-guA- CU-------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------U CUUAGAGG]- --|------- ---------- GACU-Auu-g ug-c(----- 5041 --aagaa-)g ccaa-U-GGA AGUU-UAAGG CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UG A|UGCC|CC- 5221 U-AGA-CGUG CUCG-GCCGC A-CGCGCGUU ACAAU--G-A CUGGC----- ---------- 5281 ---(------ ----)[gcag aaaguau--- ---------- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- ---------- ---------- 5401 --uuccu-gu ccu(ggga-) agguac---g gguaau-cuu auuaau]--- ---------- 5461 -------acc agu-c-g--- UGUU-A-GGG AUAGUUCUU( UGGAAUUU)U GGAUCUUG-A 5521 ACGAGG-AAU U--UCUAGUA AG-UGC-AAG (-UCAUCAG- )CUUGC-G-U -UGAUUAUG- 5581 U-CCCUGCCG UU|UGUA-CA CACCGCCCGU CGCUUG-U-A GU-AAC---G AA-UGGucu- 5641 ggu-gaac-- cuu-cugga- cugu-gaca- ---------- ---------- ---------- 5701 -------(gc aa----)--- ---------- ---------- ---------- ---------- 5761 --uguu-acg -gaaa-|aau -aaguaaacc cu-acc-a-u uugg-AACAA CA-AGAA-G- 5821 UCGUAACAAG GU-------- -----A-U-C UGUAGG(UGA A)CCUGCAGA UGGAUCA--- 5881 --UUA~~~~~ ~~~~~~~~|| ||| // LOCUS T.malaccen 5903 bp RNA RNA 11-JAN-191 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: M26360 ID TMMP75RR standard; DNA; INV; 1753 BP. XX AC M26360; XX DT 23-NOV-1989 (Rel. 21, Created) DT 02-MAR-1992 (Rel. 31, Last updated, Version 4) XX DE T. malaccensis small subunit ribosomal RNA gene for 16S-like rRNA XX KW 16S ribosomal RNA homologue; ribosomal RNA small subunit. XX OS Tetrahymena malaccensis OC Eukaryota; Animalia; Protozoa; Ciliophora; Oligohymenophora; OC Hymenostomata; Hymenostomatida; Tetrahymenina; Tetrahymenidae. XX RN [1] RP 1-1753 RA Sogin M.L., Ingold A., Karlok M., Nielsen H., Enberg J.; RT "Phylogentic evidence for the acquisition of ribosomal RNA introns RT subsequent to the divergence of some of the major Tetrahymena RT groups"; RL EMBO J. 5:3625-3630(1986). XX RN [2] RP 1-1753 RA Sogin M.L.; RT ; RL Submitted (24-SEP-1990) to the EMBL Data Library by: RL Sogin M.L., Marine Biological Laboratory, Center for Molecular RL Evolution, Woods Hole, MA 02543, USA. XX CC *source: strain=MP75 (intron+); CC *source: isolate=ATCC 50066.; XX CC See - and - for related sequences. XX FH Key Location/Qualifiers FH XX SQ Sequence 1753 BP; 518 A; 317 C; 434 G; 484 T; 0 other; BASE COUNT 518 a 317 c 434 g 484 t 4150 others ORIGIN 1 |--------- -----AACCU GGU(UGA)UC CU|GCCAGU- U-A-CA-UAU --GCUUGUCU 61 UAAA|-UAUU AA-CCCAUGC A-UGUGC-CA GU|------- |-------(- ---)[----- 121 ---------- ---------u caguau---u ---------- -ga-a-cagc gaa]------ 181 -----|---A CU|G-CGAA- UGGCU-CAUU AAAa-cagu- uau-aguu-- ----uauuug 241 auaa<----- ---------- ---------- ---------- ---------- --uuaaagau 301 u>ACAUGG-A UAACCGAGC( -U-AAUU)GU UGGGC-UAA- UACAUG---- ----(----) 361 ---------- -------(-- --)--|---- -- -aaaucaucu -aa|guuucu gc|--CCU-A UCA--GCUCU C-GAUGGUA- 1141 GU(-GUAUUG G)ACU-ACCA U-|GGCAG-U CAC|GGGU-A A-CGGA|GAA -U-(UAGG-) 1201 GUU-CGAUU- CCG|GAGAAG G-AGCC(U-G AGAAAC)GGC UACU-ACAAC (UACG-)GUU 1261 CGGCAGC-A- ---------| GGG-AA-GA- AAAUU-GGCC -AAUCCU-A( ---auu--)C 1321 AGGG-A-GCC -|A|GUGACA AGAA-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AG CAAGCUGGG- -AAAC(---- ---auac)GU UUCUA-CGGC A-UUGAAAU- 1501 ------GAGA ----ACAGUG -UAAA--UCU C-----UU-A G-CGA-GGAA C---->AAUU 1561 GGAG|GG-CA A-GU-CAUGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCCAA 1621 U-AGCGUA|U AUUAA--AGU UGUUG-CAG| UUA--AAAAG CUCGUAGUUG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 aacuuc--ug u-ucag-guu cauuuc--ga (u--ucg)uc g-ugug-aaa ---------- 1801 ---------- -----cu-g- ga-cau-acg -uuu------ ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- --------gc aaacuaaaau 2161 cggccuu--- ---------- ---------- ---cacuggu ucga------ ---------- 2221 ---cuuaggg aguaaaca-- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- --UUUUACUG UG-AAAA--A 2461 AUUAGAGUGU UC-CA-GG-C AGGUuu---- ---------- ---------- ---------- 2521 --------ua -GCC-C--GA AUACAU-UAG CAUGGAA|UA -AUGGAA-UA -GGACuAAGU 2581 c--------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ----|-CAUU 2821 -UU-AUUGGU -UC-UU---- --------gg AUU-UG-GUA A--UGAUUAA UA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGA|CAGU ---------- 3001 --UGGGGGCA UU|--AGUAU UUAAUAG-UC -AGAG(GU-G AAA---)UUC U-UGGA-U-U 3061 UAUUA-AGG- A-CUAACU-A AUGC(-GAAA )--GC|A--- UUUGCC-AA| AG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUG ---UUUUCAU -UAA-U|CA- A-GAACGAAA 3301 GUUAGGGGA- UCAAAGACG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CGUAG|UCU UA--ACU-AU AAACUAUACC GAC|UC|--- 3421 --gggau-cg gcu-g-g-aa ----(----- uaaa-----) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- -----ugu-c c-ag-ucg-g ca-ccgu--- ---------- ----auGA(- 3661 GAAA-)UCa- -aAGUC-uuu gGGU|-U|C- UGGGGGAAGU AU--GGUAC( --GCAA-)GU 3721 CUG-AAACUU -AAAG--GAA -UUG|AC-GG -AA-CAGCA- -C-AC-CAGA ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --A-GU|-GG 4021 AACCUGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--GAA ACUCACGAGC GC[aag-aca 4081 gaga-aggga uu-----gac aga(-uugag agc)------ ucuuu----- cuu-gauu-c 4141 uuuggg---- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU-G-CAUG |GCC|GU-UC UUA|GUUGG- U|GGA(-GUG 4261 A-)UUUGUC- -UGG(UU-AA UU)CCGUUA- AC-GAACGAG ACCUU-AA|- ---------- 4321 ------(--- --)[CCU-GC UAACUAGUcu g--cgugu-- ---------- --ga-aua-- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- ---------- --acaugu-- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ----u-guA- CU-------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------U CUUAGAGG]- --|------- ---------- GACU-Auu-g ug-c(----- 5041 --aauaa-)g ccaa-U-GGA AGUU-UAAGG CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UG A|UGCC|CC- 5221 U-AGA-CGUG CUCG-GCCGC A-CGCGCGUU ACAAU--G-A CUGGC----- ---------- 5281 ---(------ ----)[gcaa aaaguau--- ---------- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- ---------- ---------- 5401 --uuccu-gu ccu(ggga-) agguac---g gguaau-cuu auuaau]--- ---------- 5461 -------acc agu-c-g--- UGUU-A-GGG AUAGUUCUU( UGGAAUUG)U GGAUCUUG-A 5521 ACGAGG-AAU U--UCUAGUA AG-UGC-AAG (-UCAUCAG- )CUUGC-G-U -UGAUUAUG- 5581 U-CCCUGCCG UU|UGUA-CA CACCGCCCGU CGCUUG-U-A GU-AAC---G AA-UGGucu- 5641 ggu-gaac-- cuu-cugga- cugc-gaca- ---------- ---------- ---------- 5701 -------(gc aa----)--- ---------- ---------- ---------- ---------- 5761 --uguu-gcg -gaaa-|aau -aaguaaacc cu-acc-a-u uugg-AACAA CA-AGAA-G- 5821 UCGUAACAAG GU-------- -----A-U-C UGUAGG(UGA A)CCUGCAGA UGGAUCA--- 5881 --UUA~~~~~ ~~~~~~~~|| ||| // LOCUS T.nanneyi 5903 bp RNA RNA 11-JAN-191 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: X56169 ID TNSSRRNA standard; DNA; INV; 1752 BP. XX AC X56169; XX DT 29-MAY-1992 (Rel. 32, Created) DT 29-MAY-1992 (Rel. 32, Last updated, Version 1) XX DE T.nanneyi gene for small subunit ribosomal RNA (16S like rRNA) XX KW ribosomal RNA; small subunit ribosomal RNA. XX OS Tetrahymena nanneyi OC Eukaryota; Animalia; Protozoa; Ciliophora; Oligohymenophora; OC Hymenostomata; Hymenostomatida; Tetrahymenina; Tetrahymenidae. XX RN [1] RA Sogin M.L., Ingold A., Karlok M., Nielsen H., Enberg J.; RT "Phylogentic evidence for the acquisition of ribosomal RNA introns RT subsequent to the divergence of some of the major Tetrahymena RT groups"; RL EMBO J. 5:3625-3630(1986). XX RN [2] RP 1-1752 RA Sogin M.L.; RT ; RL Submitted (14-NOV-1990) to the EMBL Data Library by: RL M.L. Sogin, MARINE BIOLOGICAL LABORATORY, CENTRE FOR MOLECULAR RL EVOLUTION, WOODS HOLE MA 02543, USA XX CC *source: strain=ATCC 30840; CC *source: sub_strain=XQ5 (intron+); XX FH Key Location/Qualifiers FH XX SQ Sequence 1752 BP; 517 A; 314 C; 435 G; 486 T; 0 other; BASE COUNT 517 a 314 c 435 g 486 t 4151 others ORIGIN 1 |--------- -----AACCU GGU(UGA)UC CU|GCCAGU- U-A-CA-UAU --GCUUGUCU 61 UAAA|-UAUU AA-CCCAUGC A-UGUGC-CA GU|------- |-------(- ---)[----- 121 ---------- ---------u caguau---u ---------- -ga-a-cagc gaa]------ 181 -----|---A CU|G-CGAA- UGGCU-CAUU AAAa-cagu- uau-aguu-- ----uauuug 241 auaa<----- ---------- ---------- ---------- ---------- --uuaaagau 301 u>ACAUGG-A UAACCGAGC( -U-AAUU)GU UGGGC-UAA- UACAUG---- ----(----) 361 ---------- -------(-- --)--|---- -- -aaaucaucu -aa|guuucu gc|--CCU-A UCA--GCUCU C-GAUGGUA- 1141 GU(-GUAUUG G)ACU-ACCA U-|GGCAG-U CAC|GGGU-A A-CGGA|GAA -U-(UAGG-) 1201 GUU-CGAUU- CCG|GAGAAG G-AGCC(U-G AGAAAC)GGC UACU-ACAAC (UACG-)GUU 1261 CGGCAGC-A- ---------| GGG-AA-GA- AAAUU-GGCC -AAUCCU-A( ---auu--)C 1321 AGGG-A-GCC -|A|GUGACA AGAA-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AG CAAGCUGGG- -AAAC(---- ---uaa-)GU UUCUA-CGGC A-UUGAAAU- 1501 ------GAGA ----AAAGUG -UUAA--UCU C-----UU-A G-CGA-GGAA C---->AAUU 1561 GGAG|GG-CA A-GU-CAUGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCCAA 1621 U-AGCGUA|U AUUAA--AGU UGUUG-CAG| UUA--AAAAG CUCGUAGUUG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 aacuuc--ug u-ucag-guu cauuuc--ga (c--ucg)uc g-agug-aaa ---------- 1801 ---------- -----cu-g- gg-cau-acg -ucu------ ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- --------gc aaacuaaaau 2161 cggccuu--- ---------- ---------- ---cacuggu ucga------ ---------- 2221 ---cuuaggg aguaggca-- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- --UUUUACUG UG-AAAA--A 2461 AUUAGAGUGU UU-CA-GG-C AGGUuu---- ---------- ---------- ---------- 2521 --------ua -GCC-C--GA AUACAU-UAG CAUGGAA|UA -AUGGAA-UA -GGACuAAGU 2581 c--------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ----|-CAUU 2821 -UU-AUUGGU -UC-UU---- --------gg AUU-UG-GUA A--UGAUUAA UA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGA|CAGU ---------- 3001 --UGGGGGCA UU|--AGUAU UUAAUAG-UC -AGAG(GU-G AAA---)UUC U-UGGA-U-U 3061 UAUUA-AGG- A-CUAACU-A AUGC(-GAAA )--GC|A--- UUUGCC-AA| AG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUG ---UUUUCAU -UAA-U|CA- A-GAACGAAA 3301 GUUAGGGGA- UCAAAGACG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CGUAG|UCU UA--ACU-AU AAACUAUACC GAC|UC|--- 3421 --gggau-cg gcu-g-g-aa ----(----- uaua-----) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- -----ugu-c c-ag-ucg-g ca-ccgu--- ---------- ----auGA(- 3661 GAAA-)UCa- -aAGUC-uuu gGGU|-U|C- UGGGGGAAGU AU--GGUAC( --GCAA-)GU 3721 CUG-AAACUU -AAAG--GAA -UUG|AC-GG -AA-CAGCA- -C-AC-CAGA ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --A-GU|-GG 4021 AACCUGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--GAA ACUCACGAGC GC[aag-aca 4081 gaga-aggga uu-----gac aga(-uugag agc)------ ucuuu----- cuu-gauu-c 4141 uuuggg---- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU-G-CAUG |GCC|GU-UC UUA|GUUGG- U|GGA(-GUG 4261 A-)UUUGUC- -UGG(UU-AA UU)CCGUUA- AC-GAACGAG ACCUU-AA|- ---------- 4321 ------(--- --)[CCU-GC UAACUAGUcu g--ucugu-- ---------- --ga-aua-- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- ---------- --acagau-- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ----u-guA- CU-------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------U CUUAGAGG]- --|------- ---------- GACU-Auu-g ug-c(----- 5041 --aagaa-)g ccaa-U-GGA AGUU-UAAGG CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UG A|UGCC|CC- 5221 U-AGA-CGUG CUCG-GCCGC A-CGCGCGUU ACAAU--G-A CUGGC----- ---------- 5281 ---(------ ----)[gcag aaaguau--- ---------- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- ---------- ---------- 5401 --uuccu-gu ccu(ggga-) agguac---g gguaau-cuu auuaau]--- ---------- 5461 -------acc agu-c-g--- UGUU-A-GGG AUAGUUCUU( UGGAAUUU)U GGAUCUUG-A 5521 ACGAGG-AAU U--UCUAGUA AG-UGC-AAG (-UCAUCAG- )CUUGC-G-U -UGAUUAUG- 5581 U-CCCUGCCG UU|UGUA-CA CACCGCCCGU CGCUUG-U-A GU-AAC---G AA-UGGucu- 5641 ggu-gaac-- cuu-cugga- cugu-gaca- ---------- ---------- ---------- 5701 -------(gc aa----)--- ---------- ---------- ---------- ---------- 5761 --uguu-acg -gaaa-|aau -aaguaaacc cu-acc-a-u uugg-AACAA CA-AGAA-G- 5821 UCGUAACAAG GU-------- -----A-U-C UGUAGG(UGA A)CCUGCAGA UGGAUCA--- 5881 --UUA~~~~~ ~~~~~~~~|| ||| // LOCUS T.patula 5903 bp RNA RNA 11-JAN-191 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: X56174 ID TPSSRRNAB standard; DNA; INV; 1752 BP. XX AC X56174; XX DT 29-MAY-1992 (Rel. 32, Created) DT 29-MAY-1992 (Rel. 32, Last updated, Version 1) XX DE T.patula gene for small subunit ribosomal RNA (16S like rRNA) XX KW ribosomal RNA; small subunit ribosomal RNA. XX OS Tetrahymena patula OC Eukaryota; Animalia; Protozoa; Ciliophora; Oligohymenophora; OC Hymenostomata; Hymenostomatida; Tetrahymenina; Tetrahymenidae. XX RN [1] RA Sogin M.L., Ingold A., Karlok M., Nielsen H., Enberg J.; RT "Phylogentic evidence for the acquisition of ribosomal RNA introns RT subsequent to the divergence of some of the major Tetrahymena RT groups"; RL EMBO J. 5:3625-3630(1986). XX RN [2] RP 1-1752 RA Sogin M.L.; RT ; RL Submitted (14-NOV-1990) to the EMBL Data Library by: RL M.L. Sogin, MARINE BIOLOGICAL LABORATORY, CENTRE FOR MOLECULAR RL EVOLUTION, WOODS HOLE MA 02543, USA XX CC *source: strain=ATCC 50064; CC *source: sub_strain=LFF (intron-, macrostome form); XX FH Key Location/Qualifiers FH XX SQ Sequence 1752 BP; 517 A; 315 C; 435 G; 485 T; 0 other; BASE COUNT 517 a 315 c 435 g 485 t 4151 others ORIGIN 1 |--------- -----AACCU GGU(UGA)UC CU|GCCAGU- U-A-CA-UAU --GCUUGUCU 61 UAAA|-UAUU AA-CCCAUGC A-UGUGC-CA GU|------- |-------(- ---)[----- 121 ---------- ---------u caguau---u ---------- -ga-a-cagc gaa]------ 181 -----|---A CU|G-CGAA- UGGCU-CAUU AAAa-cagu- uau-aguu-- ----uauuug 241 auaa<----- ---------- ---------- ---------- ---------- --uuaaagau 301 u>ACAUGG-A UAACCGAGC( -U-AAUU)GU UGGGC-UAA- UACAUG---- ----(----) 361 ---------- -------(-- --)--|---- -- -aaaucaucu -aa|guuucu gc|--CCU-A UCA--GCUCU C-GAUGGUA- 1141 GU(-GUAUUG G)ACU-ACCA U-|GGCAG-U CAC|GGGU-A A-CGGA|GAA -U-(UAGG-) 1201 GUU-CGAUU- CCG|GAGAAG G-AGCC(U-G AGAAAC)GGC UACU-ACAAC (UACG-)GUU 1261 CGGCAGC-A- ---------| GGG-AA-GA- AAAUU-GGCC -AAUCCU-A( ---auu--)C 1321 AGGG-A-GCC -|A|GUGACA AGAA-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AG CAAGCUGGG- -AAAC(---- ---uaa-)GU UUCUA-CGGC A-UUGAAAU- 1501 ------GAGA ----AAAGUG -UUAA--UCU C-----UU-A G-CGA-GGAA C---->AAUU 1561 GGAG|GG-CA A-GU-CAUGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCCAA 1621 U-AGCGUA|U AUUAA--AGU UGUUG-CAG| UUA--AAAAG CUCGUAGUUG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 aacuuc--ug u-ucag-guu cauuuc--ga (c--ucg)uc g-agug-aaa ---------- 1801 ---------- -----cu-g- gg-cau-acg -ucu------ ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- --------gc aaacuaaaau 2161 cggccuu--- ---------- ---------- ---cacuggu ucga------ ---------- 2221 ---cuuaggg aguaggca-- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- --UUUUACUG UG-AAAA--A 2461 AUUAGAGUGU UU-CA-GG-C AGGUuu---- ---------- ---------- ---------- 2521 --------ua -GCC-C--GA AUACAU-UAG CAUGGAA|UA -AUGGAA-UA -GGACuAAGU 2581 c--------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ----|-CAUU 2821 -UU-AUUGGU -UC-UU---- --------gg AUU-UG-GUA A--UGAUUAA UA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGA|CAGU ---------- 3001 --UGGGGGCA UU|--AGUAU UUAAUAG-UC -AGAG(GU-G AAA---)UUC U-UGGA-U-U 3061 UAUUA-AGG- A-CUAACU-A AUGC(-GAAA )--GC|A--- UUUGCC-AA| AG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUG ---UUUUCAU -UAA-U|CA- A-GAACGAAA 3301 GUUAGGGGA- UCAAAGACG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CGUAG|UCU UA--ACU-AU AAACUAUACC GAC|UC|--- 3421 --gggau-cg gcu-g-g-aa ----(----- uaua-----) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- -----ugu-c c-ag-ucg-g ca-ccgu--- ---------- ----auGA(- 3661 GAAA-)UCa- -aAGUC-uuu gGGU|-U|C- UGGGGGAAGU AU--GGUAC( --GCAA-)GU 3721 CUG-AAACUU -AAAG--GAA -UUG|AC-GG -AA-CAGCA- -C-AC-CAGA ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --A-GU|-GG 4021 AACCUGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--GAA ACUCACGAGC GC[aag-aca 4081 gaga-aggga uu-----gac aga(-uugag agc)------ ucuuu----- cuu-gauu-c 4141 uuuggg---- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU-G-CAUG |GCC|GU-UC UUA|GUUGG- U|GGA(-GUG 4261 A-)UUUGUC- -UGG(UU-AA UU)CCGUUA- AC-GAACGAG ACCUU-AA|- ---------- 4321 ------(--- --)[CCU-GC UAACUAGUcu g--ucugu-- ---------- --ga-aca-- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- ---------- --acagau-- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ----u-guA- CU-------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------U CUUAGAGG]- --|------- ---------- GACU-Auu-g ug-c(----- 5041 --aagaa-)g ccaa-U-GGA AGUU-UAAGG CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UG A|UGCC|CC- 5221 U-AGA-CGUG CUCG-GCCGC A-CGCGCGUU ACAAU--G-A CUGGC----- ---------- 5281 ---(------ ----)[gcag aaaguau--- ---------- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- ---------- ---------- 5401 --uuccu-gu ccu(ggga-) agguac---g gguaau-cuu auuaau]--- ---------- 5461 -------acc agu-c-g--- UGUU-A-GGG AUAGUUCUU( UGGAAUUU)U GGAUCUUG-A 5521 ACGAGG-AAU U--UCUAGUA AG-UGC-AAG (-UCAUCAG- )CUUGC-G-U -UGAUUAUG- 5581 U-CCCUGCCG UU|UGUA-CA CACCGCCCGU CGCUUG-U-A GU-AAC---G AA-UGGucu- 5641 ggu-gaac-- cuu-cugga- cugu-gaca- ---------- ---------- ---------- 5701 -------(gc aa----)--- ---------- ---------- ---------- ---------- 5761 --uguu-acg -gaaa-|aau -aaguaaacc cu-acc-a-u uugg-AACAA CA-AGAA-G- 5821 UCGUAACAAG GU-------- -----A-U-C UGUAGG(UGA A)CCUGCAGA UGGAUCA--- 5881 --UUA~~~~~ ~~~~~~~~|| ||| // LOCUS T.pigmento 5903 bp RNA RNA 11-JAN-191 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: M26358 ID TPUM1286 standard; DNA; INV; 1752 BP. XX AC M26358; XX DT 23-NOV-1989 (Rel. 21, Created) DT 02-MAR-1992 (Rel. 31, Last updated, Version 4) XX DE T. pigmentosa small subunit ribosomal RNA gene for 16S-like RNA XX KW 16S ribosomal RNA homologue; ribosomal RNA small subunit. XX OS Tetrahymena pigmentosa OC Eukaryota; Animalia; Protozoa; Ciliophora; Oligohymenophora; OC Hymenostomata; Hymenostomatida; Tetrahymenina; Tetrahymenidae. XX RN [1] RP 1-1752 RA Sogin M.L., Ingold A., Karlok M., Nielsen H., Enberg J.; RT "Phylogentic evidence for the acquisition of ribosomal RNA introns RT subsequent to the divergence of some of the major Tetrahymena RT groups"; RL EMBO J. 5:3625-3630(1986). XX RN [2] RP 1-1752 RA Sogin M.L.; RT ; RL Submitted (24-SEP-1990) to the EMBL Data Library by: RL Sogin M.L., Marine Biological Laboratory, Center for Molecular RL Evolution, Woods Hole, MA 02543, USA. XX CC *source: strain=UM 1286 (intron-).; XX CC See - and -<56174> for associated CC sequences. CC The original sequence was typed in from the paper. However, three CC rather than two gs were typed in between bases 754 and 755. The CC sequence now corresponds to the paper and the submission ([1] and CC [2]). XX FH Key Location/Qualifiers FH FT old_sequence 754..755 FT /note="gg was ggg (see CC)" XX SQ Sequence 1752 BP; 517 A; 314 C; 435 G; 486 T; 0 other; BASE COUNT 517 a 314 c 435 g 486 t 4151 others ORIGIN 1 |--------- -----AACCU GGU(UGA)UC CU|GCCAGU- U-A-CA-UAU --GCUUGUCU 61 UAAA|-UAUU AA-CCCAUGC A-UGUGC-CA GU|------- |-------(- ---)[----- 121 ---------- ---------u caguau---u ---------- -ga-a-cagc gaa]------ 181 -----|---A CU|G-CGAA- UGGCU-CAUU AAAa-cagu- uau-aguu-- ----uauuug 241 auaa<----- ---------- ---------- ---------- ---------- --uuaaagau 301 u>ACAUGG-A UAACCGAGC( -U-AAUU)GU UGGGC-UAA- UACAUG---- ----(----) 361 ---------- -------(-- --)--|---- -- -aaaucaucu -aa|guuucu gc|--CCU-A UCA--GCUCU C-GAUGGUA- 1141 GU(-GUAUUG G)ACU-ACCA U-|GGCAG-U CAC|GGGU-A A-CGGA|GAA -U-(UAGG-) 1201 GUU-CGAUU- CCG|GAGAAG G-AGCC(U-G AGAAAC)GGC UACU-ACAAC (UACG-)GUU 1261 CGGCAGC-A- ---------| GGG-AA-GA- AAAUU-GGCC -AAUCCU-A( ---auu--)C 1321 AGGG-A-GCC -|A|GUGACA AGAA-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AG CAAGCUGGG- -AAAC(---- ---uaa-)GU UUCUA-CGGC A-UUGAAAU- 1501 ------GAGA ----AAAGUG -UUAA--UCU C-----UU-A G-CGA-GGAA C---->AAUU 1561 GGAG|GG-CA A-GU-CAUGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCCAA 1621 U-AGCGUA|U AUUAA--AGU UGUUG-CAG| UUA--AAAAG CUCGUAGUUG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 aacuuc--ug u-ucag-guu cauuuc--ga (c--ucg)uc g-agug-aaa ---------- 1801 ---------- -----cu-g- gg-cau-acg -ucu------ ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- --------gc aaacuaaaau 2161 cggccuu--- ---------- ---------- ---cacuggu ucga------ ---------- 2221 ---cuuaggg aguaggca-- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- --UUUUACUG UG-AAAA--A 2461 AUUAGAGUGU UU-CA-GG-C AGGUuu---- ---------- ---------- ---------- 2521 --------ua -GCC-C--GA AUACAU-UAG CAUGGAA|UA -AUGGAA-UA -GGACuAAGU 2581 c--------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ----|-CAUU 2821 -UU-AUUGGU -UC-UU---- --------gg AUU-UG-GUA A--UGAUUAA UA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGA|CAGU ---------- 3001 --UGGGGGCA UU|--AGUAU UUAAUAG-UC -AGAG(GU-G AAA---)UUC U-UGGA-U-U 3061 UAUUA-AGG- A-CUAACU-A AUGC(-GAAA )--GC|A--- UUUGCC-AA| AG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUG ---UUUUCAU -UAA-U|CA- A-GAACGAAA 3301 GUUAGGGGA- UCAAAGACG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CGUAG|UCU UA--ACU-AU AAACUAUACC GAC|UC|--- 3421 --gggau-cg gcu-g-g-aa ----(----- uaua-----) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- -----ugu-c c-ag-ucg-g ca-ccgu--- ---------- ----auGA(- 3661 GAAA-)UCa- -aAGUC-uuu gGGU|-U|C- UGGGGGAAGU AU--GGUAC( --GCAA-)GU 3721 CUG-AAACUU -AAAG--GAA -UUG|AC-GG -AA-CAGCA- -C-AC-CAGA ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --A-GU|-GG 4021 AACCUGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--GAA ACUCACGAGC GC[aag-aca 4081 gaga-aggga uu-----gac aga(-uugag agc)------ ucuuu----- cuu-gauu-c 4141 uuuggg---- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU-G-CAUG |GCC|GU-UC UUA|GUUGG- U|GGA(-GUG 4261 A-)UUUGUC- -UGG(UU-AA UU)CCGUUA- AC-GAACGAG ACCUU-AA|- ---------- 4321 ------(--- --)[CCU-GC UAACUAGUcu g--ucugu-- ---------- --ga-aua-- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- ---------- --acagau-- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ----u-guA- CU-------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------U CUUAGAGG]- --|------- ---------- GACU-Auu-g ug-c(----- 5041 --aagaa-)g ccaa-U-GGA AGUU-UAAGG CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UG A|UGCC|CC- 5221 U-AGA-CGUG CUCG-GCCGC A-CGCGCGUU ACAAU--G-A CUGGC----- ---------- 5281 ---(------ ----)[gcag aaaguau--- ---------- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- ---------- ---------- 5401 --uuccu-gu ccu(ggga-) agguac---g gguaau-cuu auuaau]--- ---------- 5461 -------acc agu-c-g--- UGUU-A-GGG AUAGUUCUU( UGGAAUUU)U GGAUCUUG-A 5521 ACGAGG-AAU U--UCUAGUA AG-UGC-AAG (-UCAUCAG- )CUUGC-G-U -UGAUUAUG- 5581 U-CCCUGCCG UU|UGUA-CA CACCGCCCGU CGCUUG-U-A GU-AAC---G AA-UGGucu- 5641 ggu-gaac-- cuu-cugga- cugu-gaca- ---------- ---------- ---------- 5701 -------(gc aa----)--- ---------- ---------- ---------- ---------- 5761 --uguu-acg -gaaa-|aau -aaguaaacc cu-acc-a-u uugg-AACAA CA-AGAA-G- 5821 UCGUAACAAG GU-------- -----A-U-C UGUAGG(UGA A)CCUGCAGA UGGAUCA--- 5881 --UUA~~~~~ ~~~~~~~~|| ||| // LOCUS T.pyriform 5903 bp RNA RNA 11-JAN-191 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: X56171 ID TPSSRRNA standard; DNA; INV; 1752 BP. XX AC X56171; XX DT 29-MAY-1992 (Rel. 32, Created) DT 29-MAY-1992 (Rel. 32, Last updated, Version 1) XX DE T.pyriformis gene for small subunit ribosomal RNA (16S like rRNA) XX KW ribosomal RNA; small subunit ribosomal RNA. XX OS Tetrahymena pyriformis OC Eukaryota; Animalia; Protozoa; Ciliophora; Oligohymenophora; OC Hymenostomata; Hymenostomatida; Tetrahymenina; Tetrahymenidae. XX RN [1] RA Sogin M.L., Ingold A., Karlok M., Nielsen H., Enberg J.; RT "Phylogentic evidence for the acquisition of ribosomal RNA introns RT subsequent to the divergence of some of the major Tetrahymena RT groups"; RL EMBO J. 5:3625-3630(1986). XX RN [2] RP 1-1752 RA Sogin M.L.; RT ; RL Submitted (14-NOV-1990) to the EMBL Data Library by: RL M.L. Sogin, MARINE BIOLOGICAL LABORATORY, CENTRE FOR MOLECULAR RL EVOLUTION, WOODS HOLE MA 02543, USA XX CC *source: sub_strain=GL-c (intron-, a-micronuclear); XX FH Key Location/Qualifiers FH XX SQ Sequence 1752 BP; 518 A; 316 C; 436 G; 482 T; 0 other; BASE COUNT 518 a 316 c 436 g 482 t 4151 others ORIGIN 1 |--------- -----AACCU GGU(UGA)UC CU|GCCAGU- U-A-CA-UAU --GCUUGUCU 61 UAAA|-UAUU AA-CCCAUGC A-UGUGC-CA GU|------- |-------(- ---)[----- 121 ---------- ---------u caguau---u ---------- -ga-a-cagc gaa]------ 181 -----|---A CU|G-CGAA- UGGCU-CAUU AAAa-cagu- uau-aguu-- ----uauuug 241 auaa<----- ---------- ---------- ---------- ---------- --uuaaagau 301 u>ACAUGG-A UAACCGAGC( -U-AAUU)GU UGGGC-UAA- UACAUG---- ----(----) 361 ---------- -------(-- --)--|---- -- -aaaucaucu -aa|guuucu gc|--CCU-A UCA--GCUCU C-GAUGGUA- 1141 GU(-GUAUUG G)ACU-ACCA U-|GGCAG-U CAC|GGGU-A A-CGGA|GAA -U-(UAGG-) 1201 GUU-CGAUU- CCG|GAGAAG G-AGCC(U-G AGAAAC)GGC UACU-ACAAC (UACG-)GUU 1261 CGGCAGC-A- ---------| GGG-AA-GA- AAAUU-GGCC -AAUCCU-A( ---auu--)C 1321 AGGG-A-GCC -|A|GUGACA AGAA-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AG CAAGCUGGG- -AAAC(---- ---uua-)GU UUCUA-CGGC A-UUGAAAU- 1501 ------GAGA ----AAAGUG -UAAA--UCU C-----UU-A G-CGA-GGAA C---->AAUU 1561 GGAG|GG-CA A-GU-CAUGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCCAA 1621 U-AGCGUA|U AUUAA--AGU UGUUG-CAG| UUA--AAAAG CUCGUAGUUG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 aacuuc--ug u-ucag-guu cauuuc--ga (c--ucg)uc g-agug-aaa ---------- 1801 ---------- -----cu-g- ga-cau-acg -uuu------ ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- --------gc aaacuaaaau 2161 cggccuu--- ---------- ---------- ---cacuggu ucga------ ---------- 2221 ---cuuaggg aguaaaca-- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- --UUUUACUG UG-AAAA--A 2461 AUUAGAGUGU UC-CA-GG-C AGGUuu---- ---------- ---------- ---------- 2521 --------ua -GCC-C--GA AUACAU-UAG CAUGGAA|UA -AUGGAA-UA -GGACuAAGU 2581 c--------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ----|-CAUU 2821 -UU-AUUGGU -UC-UU---- --------gg AUU-UG-GUA A--UGAUUAA UA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGA|CAGU ---------- 3001 --UGGGGGCA UU|--A