LOCUS E.coli 4376 bp RNA RNA ~?~???? DEFINITION Escherichia coli. ACCESSION No information KEYWORDS No information. SOURCE Escherichia coli. ORGANISM Escherichia coli. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Organism information Culture collection: ? Phylo:Eubacteria,Purple,gamma,3 BASE COUNT 389 a 352 c 487 g 314 t 2834 others ORIGIN 1 |--------- ---------- ---------- ---AAAUUGA AGAGUU(U-G A)U-CAU|-G 61 GCUCAG-AUU -GAAC-GC-- UGGC-GGC-A -GGC-CU--A ACAC-AUGCA A-GUC-GAAC 121 G--GU-AA-C AG-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --GAAGA-AG (--CU----- ---------- ---------- 241 --------UG -)CU-UCUUU ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- CUG|-AC--G AGUG-GCGG- 361 -A-CG-GG-U GAGU---AAU -GU-CUGGG- A-A--ACU-G C-CUGA---U -GGAG-G-GG 421 -GAU-AA-CU A--------- ------CU-- G(-GAAA-)C -GGUA-G--C UAAUACC-GC 481 AU-AAC---- ---------- ---------- ---------- ---GUC-(-- --------GC 541 AA-------- -)-GAC---- ---------- ----CAAA-- ---GAGGGG- GA--CC---- 601 --(------- ---UUCG--- ---)------ -----GG--| -CCUCU--U- G--CCA---- 661 ----UCGG-- AUG---U-|G CCCAG----- -AU|----GG G--AUUA-G- CUA-G---UA 721 GG-UG-GG-( GU-AAC-GG) -C-UCACC-U A|-GGC-GA- CGA------- -----UC-CC 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-C-- CAG-C|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GCA A)-GCC-UGA UGCA|-GCCA UGCC-GC-GU 961 G-U-AU-G-A A-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--GUAC| UUUC-AG-CG 1021 --GG-GAG-- GA-A-GG-GA --GUA-AAG( U----UAAUA -----C---) CUUU-GC-UC 1081 ---------- -------A-U U-GA-CGUU- A-CCC-G-CA G-AA--GAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGUG-C-- 1201 AAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGC- ACG-CAG-GC -G|-GU-UU- 1261 G-UU-AAG|U CAG---AUGU G-AAA-UC-C CC-GGG-C(- UC-A)A-CCU -GG-G-AAC- 1321 -UGCA-UCUG A-UAC-UGGC A-AGCUU-GA GUC-----UC G-UA-GAGGG GGG-U|AGAA 1381 UU-CCAGGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UC-UGGAGG- AAUA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -CCCCCUG-- ---------- ---------- ---------G 1501 ACG--AA-GA CUGACG-CUC AG-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGU C--GA-CU-- -------U|G -GA-GG-UUG -UG-CC---- ---------- 1681 -(cuu-ga)- ---------- ---------- ---------- -------GGC -GUGGC-UUC 1741 CG--GA---- --GC-(UAA- ---C)G-CG- UUAA-GUCGA C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G UU-AAAACUC -AAA-UGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-UC-UUG ACA-UC|--- ---------C ---ACGG--- -AA----GUU 1981 -UUC-A--(- GAGA-)-UGA -G-AAUG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AA---| CCG-UG-AGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-U(-GUG A)-AAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-A |-UC--CUU- 2281 UG--UUGC-C AG-CGG---- ---------- ---------- ----(---uc ---cgg--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CCG|G 2701 G-AA-CU-C- A-AAG-GA-G A-CU-G-CCA --GU(-GA-U AA)-ACU-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-AC -CA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-G-CA -UA--CAAAG AGA-A-G-C- GA-CCU-C(G 2881 -CGA)GAGC- ---------- AA-GCGGA-C CUCAU-AAAG -UG-C-GUC- GUAGUCCGGA 2941 U-UGGAGUC- (UGCAAC-U- C)-GACUCCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GU-GGA-(UC -AGA-AU)-G CCA-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-GGG- UU-GC-AAAA -GAA-G-UAG 3121 G-UAG-C-UU -AA-CC---- ---------- ---------- -----(---- -uucg----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-G-C G-CU-UA-CC A-CUUU-GUG AUU-CA-UG- ACU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAACC-GUAG G(GGA-A)CC UGCGGU--UG GAUCACCUCC 3361 UUA-|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS 2-BACTERIA 4376 bp RNA RNA 09-JAN-1999 DEFINITION 2 BACTERIA. ACCESSION No information KEYWORDS No information. SOURCE 2 BACTERIA. ORGANISM 2 BACTERIA. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 0 a 0 c 0 g 0 t 4376 others ORIGIN 1 x~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~-- ------~~~~ 541 ~~~~~~---- -~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~---~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- 1681 -(~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- -------~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~----~~~ 1981 ~~~~-~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~--- --~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~------ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~---~~ ---~~~--~~ 2341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- 3181 ---------- ---------- ---------- ------~)~~ ~~~~~~~~~~ ~~~~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS 2.1-THERMO 4376 bp RNA RNA 09-JAN-1999 DEFINITION 2.1 THERMOPHILIC_OXYGEN_REDUCERS. ACCESSION No information KEYWORDS No information. SOURCE 2.1 THERMOPHILIC_OXYGEN_REDUCERS. ORGANISM 2.1 THERMOPHILIC_OXYGEN_REDUCERS. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 0 a 0 c 0 g 0 t 4376 others ORIGIN 1 x~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~-- ------~~~~ 541 ~~~~~~---- -~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~---~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- 1681 -(~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- -------~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~----~~~ 1981 ~~~~-~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~--- --~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~------ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~---~~ ---~~~--~~ 2341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- 3181 ---------- ---------- ---------- ------~)~~ ~~~~~~~~~~ ~~~~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Cld.hgenph 4376 bp RNA RNA 02-JUL-1998 DEFINITION Calderobacterium hydrogenophilum str. Z-829 (T). ACCESSION No information KEYWORDS No information. SOURCE Calderobacterium hydrogenophilum str. Z-829 (T). ORGANISM Calderobacterium hydrogenophilum. REFERENCE 1 AUTHORS Pitulle,C., Yang,Y., Marchiani,M., Moore,E.R.B., Siefert,J.L ., Aragno,M., Jurtshuk,P. Jr. and Fox,G.E. TITLE Phylogenetic position of the genus Hydrogenobacter JOURNAL Int. J. Syst. Bacteriol. 44, 620-626 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: Z30242|g520631 isolate_name= Z-829 (T) BASE COUNT 335 a 401 c 509 g 246 t 2885 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 ...CAG-CGC -GAAC-GC-- UGGC-GGC-G -UGC-CU--A ACAC-AUGCA A-GUC-GUGC 121 G--------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --GGGUG-GC (--UC----- ---------- ---------- 241 --------U. .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... AGCG-GCAA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGAG- UAA--CCU-G C-CCUC---A -GGAA-G-GG 421 -GAU-AA-CC C--------- ------UC-- C(-GAAA-)G -GGGG-G--C UAAUACC-CU 481 AU-AAU---- ---------- -------G-U CC-G--G-GG ---ACC-(-- --------AC 541 UA-A------ -)-GGU---U UC-CG----G AC--CAAA-- ---GGUGGC- CUC-UGC--- 601 --(------- ----UCU--- ---)------ ----GCA-A| -GCUAC--C- G--CCU---- 661 ----GAGG-- AGG---G-|G CUCGC----- -GG|----CC C--AUCA-G- GUA-G---UU 721 GG-UG-GG-( GU-AAU-GG) -C-CUACC-A A|-GCC-UA- UGA------- -----CG-GG 781 U-AG-C-CG| -G-CNU--(G -AGA)-GGGU ----GG-C-- CGG-C|C-AC -AGUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -ACA-C-CCC -(UACG)--G GGG-GC-AG- C-A---GU-G 901 GGG-AAUCGU G-GGCAAU-- GG-GC-(GAA A)-GCC-UGA CCCC|-GCGA CGCC-GC-GU 961 G-G-AG-G-A A-GAA--N-C CC(--UU-CG --)GG-GUGU AAA--CUCC| UGUC-AG-GG 1021 --GG-GAA-- GA-UGCU-CA --CAG-GGG( U----GAAUA -----A---) UCUC-UG-UG 1081 ---------- -------G-G U-GA-CUGU- A-CCC-C-CA G-AG--GAAG ---------G 1141 -GACGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GUCC-C-- 1201 GAG-CGUUGC GC-GAAUUCA -CU-GGGC|G UAAA-GCGU- CCG-CAG-CC -G|-GA-UG- 1261 G-GU-AAG|C GGU---UUGU C-AAA-GC-C CA-CCG-C(- UC-A)A-CGG -UG-G-AAA- 1321 -GGCA-UACC G-AAC-UGCC C-AUCUU-GA GGC-----AC G-CU-CAGGU AGG-C|GGAA 1381 UU-CCCGGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UC-GGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -CCUACUG-- ---------- ---------- ---------G 1501 GGC--UG-UC CUGACG-GUC AG-G------ -------GA- C-GAAA-GC- UG-GGG-GA- 1561 GC-AAA-CC- -GG(AUUA-G AUAC)-CCG- ----GGUA-G UC----CCA- N-CC-NU--A 1621 AAC-C-AUGG G--CG-CU-- -------A|G -GC-GU-UGU -CC------- ---------- 1681 -(-GC-AA)- ---------- ---------- ---------- ---------G -GGCAG-UGC 1741 CU--CA---- --GC-(UAA- ---C)G-CG- GUAA-GCGCC C|C|G-CCU- G-GGGAGUAC 1801 GGG-C---(G CAA)---G-C CU-GAAACUC -AAA-GGAAU UG-GCGGG-G -G-C-CC--G 1861 C-A--CA-AC CGGUGG-AGC G-U-CU-GGU -UCAAUU-CG -(AUGCUA-A C)--CGAAAA 1921 A-CCUUA-CC CGG-GC-UUG ACA-UG|--- -------G-U ---AGGA--- -NA----CCC 1981 -UUG-C--(- GAAA-)-GCG -A-GGGGUG- CC-------- GUCCU----- --(CU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------G --)------- GNNNN----- ----NA---| UCC-UA-CCA |---C|A--G 2161 GU-GG-UGCA UG|G-CCG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-CU-G |-CC--CUU- 2281 AG--UUGC-C A--CUC---- ---------- ---------- ----(---UU ---CG---)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GAG|G 2701 G-CA-CU-C- U-AAG-GG-G A-CU-G-CCG --GC(-GA-U AA)-GCC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-GGUC-AG UAU-G-CC-C UUUAU-G-CC -CG--GGGC- 2821 U-ACA-CA-G GCG--CUACA GUGGC-C-GG -GA--CAAUG GGA-A-G-C- GA-CCC-A(G 2881 -CAA)UGGN- ---------- GA-GCNAA-U CCUCC-AAAC -CC-G-GUC- AUGGUGCAGA 2941 U-UGAGGGC- (UGAAAC-U- C)-GCCCUCA -UGAAGC-CG -GAAU-CGG- -UAGUA-AUG 3001 GC-GGA-(UC -AGCUAA)-G CCG-CCGUG- AAUAC-GUU- CUC-GGG-CC UUGCA----C 3061 ACACCGCCC- GUC-ACG--- --CCA-CGGA A--GU-CAG- UC-UU-CCCG -GAA-G-GCC 3121 U-CGA-G-CU -AA-CCC--- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- GGGAGG-C-A G-AG-GA-CG A-UGGG-AAG GCU-GG-CA- ACU-GGGG-C 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAG G(GGA-A)CC UG........ .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Hdg.thphi2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Hydrogenobacter thermophilus str. TK-6 (T). ACCESSION No information KEYWORDS No information. SOURCE Hydrogenobacter thermophilus str. TK-6 (T). ORGANISM Hydrogenobacter thermophilus. REFERENCE 1 AUTHORS Pitulle,C., Yang,Y., Marchiani,M., Moore,E.R.B., Siefert,J.L ., Aragno,M., Jurtshuk,P. Jr. and Fox,G.E. TITLE Phylogenetic position of the genus Hydrogenobacter JOURNAL Int. J. Syst. Bacteriol. 44, 620-626 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: Z30214|g520869 isolate_name= TK-6 (T) BASE COUNT 333 a 393 c 510 g 246 t 2894 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 ...CAG-CGC -GAAC-NN-- UGGC-GGC-G -UGC-CU--A ACAC-AUGCA A-GUC-GUGC 121 G--------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --GGGUG-GC (--UC----- ---------- ---------- 241 --------U- -)GC...... .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... NGCG-GCAA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGAG- UAA--CCU-G C-CCUC---A -GGAA-G-GG 421 -GAU-AA-CC C--------- ------UC-- C(-GAAA-)G -GGGG-G--C UAAUACC-CU 481 AU-AAA---- ---------- -------G-C CA-G--G--G ---GUC-(-- --------AC 541 AA-A------ -)-GGC---U AC-CU----G GC--CAAA-- ---GGGGGC- CUC-UGC--- 601 --(------- ----UCU--- ---)------ ----GCA-U| -GCUCC--C- G--CCU---- 661 ----GAGG-- AGG---G-|G CUCGC----- -GG|----CC N--AUCA-G- GUA-G---UU 721 GG-UG-GG-( GU-AAC-GG) -C-CUACC-A A|-GCC-UA- UGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGU ----GG-C-- CNG-C|C-AC -AGUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -ACA-C-CCC -(UACG)--N NNG-GC-AG- C-A---GU-G 901 GGG-AAUCGU G-GGCAAU-- GG-GC-(GAA A)-GCN-UGA CCCC|-GCGA CGCC-GC-GU 961 G-G-AG-G-A A-GAA--G-C CC(--UU-CG --)GG-GUGU AAA--CUCC| UGUC-AG-GG 1021 --GG-GAA-- GA-UGCU-CA --CAG-AGG( C----GAAUA -----G---) UCUC-UG-UG 1081 ---------- -------G-G U-GA-CUGU- A-CCC-C-CA G-AG--GAAG ---------G 1141 -GACGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GUCC-C-- 1201 GAG-CGUUGC GC-GAAUUUA -CU-GGGC|G UAAA-GCGU- CCG-CAG-CC -G|-GA-UG- 1261 G-GU-AAG|C GGU---UUGU C-AAA-GC-C CA-CCG-C(- UC-A)A-CGG -UG-G-AAA- 1321 -GGCA-UACC G-AAC-UGCC C-AUCUU-GA GGC-----AC G-CU-CAGGU AGG-C|GGAA 1381 UU-CCCGGU- GUA-GCG(-G UGAAA)-UGC -GC-AGAU-A UC-GGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -CCUACUG-- ---------- ---------- ---------G 1501 GGC--UG-UC CUGACG-GUC AG-G------ -------GA- C-GAAA-GC- UG-GGG-GA- 1561 GC-AAA-CC- -GG(AUUA-G AUAC)-CCG- ----GGUA-G UC----CCA- G-CC-GU--A 1621 AAC-C-AUGG G--CG-CU-- -------A|G -GC-GU-UGU -CC------- ---------- 1681 -(-GC-AA)- ---------- ---------- ---------- ---------G -GGCAG-UGC 1741 CU--CA---- --GC-(UAA- ---C)G-CG- GUAA-GCGCC C|C|G-CCU- G-GGGAGUAC 1801 GGG-C---(G CAA)---G-C CU-GAAACUC -AAA-GGAAU UG-GCGGG-G -G-C-CC--G 1861 C-A--CA-AC CGGUGG-AGC G-U-CU-GGU -UCAAUU-CG -(AUGCUA-A C)--CGAAAA 1921 A-CCUUA-CC CGG-GN-UUG ACA-UG|--- -------G-U ---GGGA--- -AA----CCC 1981 -UUG-C--(- GAAA-)-GCN -N-GGGGUG- CC-------- GUCNU----- --(CU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------G --)------- GNNNN----- ----NA---| UCC-NA-NCA |---C|A--G 2161 GU-GG-UGCA UG|G-CCG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-CU-G |-CC--CUU- 2281 AG--UUGC-U A--CUC---- ---------- ---------- ----(---UU ---CG---)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GAG|G 2701 G-CA-CU-C- U-AAG-GG-G A-CU-G-CCG --GC(-GA-U AA)-GCC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-GGUC-AG UAU-G-CC-C UUUAU-G-CC -CG--GGGC- 2821 U-ACA-CA-G GCG--CUACA GUGGC-C-GG -GA--CAAUG GGA-A-G-C- GA-CUC-A(G 2881 -UAA)UGAG- ---------- GA-GCAAA-U CCUAU-AAAC -CC-G-GUC- AUGGUGCGGA 2941 U-UGAGGGC- (UGAAAC-U- C)-GCCCUCA -UGAAGC-CG -GAAU-CGG- -UAGUA-AUG 3001 GC-GGA-(UC -AGCUAA)-G CCG-CCGUG- AAUAC-GUU- CUC-GGG-CC UUGCA----C 3061 ACACCGCCC- GUC-ACG--- --CCA-CGGA A--GU-CAG- UC-UU-CCCG -GAA-G-NCC 3121 U-CGG-G-CU -AA-CCC--- ---------- ---------- -----(---- -GUNA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- GGGAGG-U-A G-AG-GA-CG A-UGGG-AAG GCU-GG-CA- ACU-GGGG-C 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAG G(GGA-A)CC UG........ .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Hdg.thphil 4376 bp RNA RNA 02-JUL-1998 DEFINITION Hydrogenobacter thermophilus str. T3. ACCESSION No information KEYWORDS No information. SOURCE Hydrogenobacter thermophilus str. T3. ORGANISM Hydrogenobacter thermophilus. REFERENCE 1 AUTHORS Pitulle,C., Yang,Y., Marchiani,M., Moore,E.R.B., Siefert,J.L ., Aragno,M., Jurtshuk,P. Jr. and Fox,G.E. TITLE Phylogenetic position of the genus Hydrogenobacter JOURNAL Int. J. Syst. Bacteriol. 44, 620-626 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: Z30189|g520881 isolate_name= T3 BASE COUNT 341 a 400 c 505 g 246 t 2884 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 ...CAG-CGC -GAAC-GC-- UGGC-GGC-G -UGC-CU--A ACAC-AUGCA A-GUC-GUGC 121 G--------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -GAGGUG-CC (--UU----- ---------- ---------- 241 --------UU -)G....... .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... AGCG-GCAA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGAG- UAA--CCU-G C-CCUC---A -GGAA-G-GG 421 -GAU-AA-CC C--------- ------UC-- C(-GAAA-)G -GGGG-G--C UAAUACC-CU 481 AU-AAU---- ---------- -------G-U CA-G--U--C ---ACC-(-- --------AC 541 UA-A------ -)-GGU---G -G-CU----G AC--CAAA-- ---GGUGGC- CUC-UNC--- 601 --(------- ----UCU--- ---)------ ----GCA-U| -NCUAC--C- G--CCU---- 661 ----GAGG-- ANG---G-|G CUCNC----- -GG|----CC C--AUCA-G- GUA-G---UU 721 GG-UG-GG-( GU-AAC-GG) -C-CUACC-A A|-GCC-UA- UGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGU ----GU-C-- CGG-C|C-AC -AGUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -ACA-C-CCC -(UACG)--G GGG-GC-AG- C-A---GU-G 901 GGG-AAUCGU G-GGCAAU-- GG-GC-(GAA A)-GCC-UGA CCCC|-GCGA CGCC-GC-GU 961 G-G-AG-G-A A-GAA--G-C CC(--UU-CG --)GG-GUGU AAA--CUCC| UGUC-AG-GG 1021 --GG-GAA-- GA-UGCU-CA --CAG-AGG( U----GAAUA -----A---) UCUC-UG-UG 1081 ---------- -------G-G U-GA-CGGU- A-CCC-C-CA G-AG--GAAG ---------G 1141 -GACGGCU-A ACUAC-GUG( CCA--GCANC CGCGGUA-A) U-A-C-GUAG |-GUCC-C-- 1201 GAG-CGUUGC GC-GAAUUCA -CU-GGGC|G UAAA-GCGU- CCG-CAG-CC -G|-GA-UG- 1261 G-GU-AAG|C GGU---UCGU C-AAA-GC-C CA-CCG-C(- UC-A)A-CGG -UG-G-AAA- 1321 -GGCG-UACC G-AAC-UGCC C-AUCUU-GA GGC-----AC G-CU-CAGGC AGG-C|GGAA 1381 UU-CCCGGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UC-GGGAGG- AACA-CCGA- 1441 -A-G-GC(-G AA-G)GCNG- -CCUGCUG-- ---------- ---------- ---------G 1501 GGC--UG-UU CUGACG-GUC AG-N------ -------GA- C-GAAA-GC- UG-GGG-GA- 1561 GC-AAA-CC- -GG(AUUA-G AUAC)-CCG- ----GGUA-G UC----CCA- G-CC-GU--A 1621 AAC-C-AUGG G--CG-CU-- -------A|G -AC-GU-CGU -CC------- ---------- 1681 -(-GU-AA)- ---------- ---------- ---------- ---------G -GGCGG-UGU 1741 CU--CA---- --GC-(UAA- ---C)G-CG- UUAA-GCGCC C|C|G-CCU- G-GGGAGUAC 1801 GGG-C---(G CAA)---G-C CU-GAAACUC -AAA-GGAAU UG-GCGGG-G -G-C-CC--G 1861 C-A--CA-AC CGGUGG-AGC G-U-CU-GGU -UCAAUU-CG -(AUGCUA-A C)--CGAAAA 1921 A-CCUUA-CC CGG-GC-UUG ACA-UG|--- -------A-U ---GGGA--- -AA----CCU 1981 -CUG-C--(- GAAA-)-GCG -G-AGGGUG- CC-------- GUCCU----- --(CU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------G --)------- GANNN----- ----AA---| UCC-CA-UCA |---C|A--G 2161 GU-GG-UGCA UG|G-CCG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCNC AA-------- CGAG-C--GC AACCC-CU-G |-CC--CUU- 2281 AG--UUGC-C A--CUC---- ---------- ---------- ----(---UA ---CG---)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GAG|G 2701 G-CA-CU-C- U-AAG-GG-G A-CU-G-CCG --GC(-GA-U AA)-GCC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-GGUC-AG UAU-G-CC-C UUUAU-G-CC -CG--GGGC- 2821 G-ACA-CA-G GCG--CUACA GUGGC-C-GG -GA--CAAUG GGA-A-G-C- GA-CCC-A(G 2881 -AAA)UGGG- ---------- GA-GCAAA-U CCU-C-AAAC -CC-G-GUC- AUGGUGCAGA 2941 U-UGAGGGC- (UGAAAC-U- C)-GCCCUCA -UGAAGC-CG -GAAU-CGG- -UAGUA-AUG 3001 GC-GGA-(UC -AGCUAG)-G CCG-CCGUG- AAUAC-GUU- CUC-GGG-CC UUGCA----C 3061 ACACCGCCC- GUC-ACG--- --NCA-CGGA A--GU-CAG- UC-UU-CCCG -GAA-G-NCC 3121 U-CGG-N-NU -AA-CCC--- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- GGGAGG-C-A G-AG-GA-CG A-UGGG-AAG GCU-GG-CA- ACU-GGGG-C 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAG G(GGA-A)CC UGCGGC.... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS str.EM_17 4376 bp RNA RNA 02-JUL-1998 DEFINITION str. EM str. EM 17. ACCESSION No information KEYWORDS No information. SOURCE str. EM str. EM 17. ORGANISM str. EM. REFERENCE 1 AUTHORS Reysenbach,A.-L., Wickham,G.S. and Pace,N.R. TITLE Phylogenetic analysis of the hyperthermophilic pink filament community in Octopus Spring, Yellowstone National Park JOURNAL Appl. Environ. Microbiol. 60, 2113-2119 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: U05661|g454800 geog_source= Octopus Spring, Yellowstone Nat. Park biol_source= 84-88 deg. water isolate_name= EM 17 BASE COUNT 323 a 403 c 514 g 239 t 2897 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......CGC -GAAC-GC-- UGGC-GGC-G -UGC-CU--A ACAC-AUGCA A-GUC-GUGC 121 G--------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --GAGGG-GU (--GA----- ---------- ---------- 241 -------UGA -)GC-UCCUC ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|------ AGCG-GCAA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGAG- UAA--CCU-G C-CCCU---G -GGAA-G-GG 421 -GAU-AA-CC C--------- ------UC-- C(-GAAA-)G -GGGG-G--C UAAUACC-CU 481 AU-AUA---- ---------- -------G-C CG-G--G--G ---ACC-(-- --------AC 541 UA-A------ -)-GGU---C AC-CC----G GU--GAAA-- ---GGUGGC- CUC-UGCCC- 601 --(------- ---UUUAU-- ---)------ --GGGCA-U| -GCUAC--C- G--CCC---- 661 ----AGGG-- AGG---G-|G CUCGC----- -GG|----CC C--AUCA-G- GUA-G---UU 721 GG-UG-GG-( GU-AAC-GG) -C-CUACC-A A|-GCC-UA- UGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGU ----GG-U-- CGG-C|C-AC -AGUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -ACA-C-CCC -(UACG)--G GGG-GC-AG- C-A---GU-G 901 GGG-AAUCGU G-GGCAAU-- GG-GC-(GAA -)-GCC-UGA CCCC|-GCGA CGCC-GC-GU 961 G-G-AG-G-A A-GAA--G-C CC(--UU-CG --)GG-GUGU AAA--CUCC| UGUC-GG-GG 1021 --GG-GAC-- GA-UGUG-UC --UUG-GGG( U----GAAUA -----A---) UCCC-AG-GA 1081 ---------- -------C-A C-GA-CGGU- A-CCC-C-CA G-AG--GAAG ---------G 1141 -GACGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GUCC-C-- 1201 GAG-CGUUGC GC-GAAUUCA -CU-GGGC|G UAAA-GCGU- CCG-CAG-CC -G|-GA-CG- 1261 G-GU-AAG|C GGU---GCGU C-AAA-GC-C CA-CCG-C(- UC-A)A-CGG -UG-G-AAC- 1321 -GGCG-UACC G-AAC-UGCC C-GUCUU-GA GGC-----AC G-CU-UAGGC AGG-C|GGAA 1381 UU-CCCGGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UC-GGGAGG- AACA-CCGA- 1441 -A-G-GC(-G AA-G)GCAG- -CCUGCUG-- ---------- ---------- ---------G 1501 AGC--UG-UC CUGACG-GUC AG-G------ -------GA- C-GAAA-GC- UG-GGG-GA- 1561 GC-GAA-CC- -GG(AUUA-G AUAC)-CCG- ----GGUA-G UC----CCA- G-CC-GU--A 1621 AAC-C-AUGG G--CG-CU-- -------U|G -GC-GU-CGU -C-------- ---------- 1681 -(CUC-GU)- ---------- ---------- ---------- ---------- -GGCGG-UGC 1741 CG--CA---- --GC-(UAA- ---C)G-CG- GUAA-GCGCC C|C|G-CCU- G-GGG-GUAC 1801 GG------(G CAA)---G-C CU-GAAACUC -AAA-GGAAU UG-GCGGG-G -G-C-CC--G 1861 C-A--CA-AC CGGUGG-AGC G-U-CU-GGU -UCAAUU-CG -(AUGCUA-A C)--CGAAAA 1921 A-CCUUA-CC CGG-GU-UUG ACA-UG|--- -------G-U ---GGGA--- -AA----CCC 1981 -UUG-C--(- GAAA-)-GCG -A-GGGGUG- CC-------- GUCCU----- --(CU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------G --)------- GACGG----- ----AA---| UCC-UA-CCA |---C|A--G 2161 GU-GG-UGCA UG|G-CCG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-CU-G |-CC--CUU- 2281 AG--UUGC-U AC-CCC---- ---------- ---------- ----(---GA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GGG|A 2701 G-UA-CU-C- U-AAG-GG-G A-CU-G-CCG --GC(-GA-U AA)-GCC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-GGUC-AG UAU-G-CC-C UUUAU-G-CC -CG--GGGC- 2821 U-ACA-CA-G GCG--CUACA GUGGC-C-AG -GA--CAAUG GGA-U-G-C- GA-CCC-A(G 2881 -UAA)UGGG- ---------- GA-GCAAA-U CCCCC-AAAC -CU-G-GUC- AUGGUGCAGA 2941 U-UGAGGGC- (UGAAAC-U- C)-GCCCUCA -UGAAGC-CG -GAAU-CGG- -UAGUA-AUG 3001 GC-GGA-(UC -AGCUAA)-G CCG-CCGUG- AAUAC-GUU- CUC-GGG-CC UUGCA----C 3061 ACACCGCCC- GUC-ACG--- --CCA-CGGA A--GU-CAG- UC-UU-CCCG -GAA-G-GCC 3121 C-CAA-G-CU -AA-CCC--- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- GGGAGG-C-A G-GG-GA-CG A-UGGG-AAG GCU-GG-CA- ACU-GGGG-C 3301 G......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS A.aeolic.1 4376 bp RNA RNA 30-OCT-1997 DEFINITION Aquifex aeolicus.; . ACCESSION AE0007 1 AE00 657 KEYWORDS . SOURCE Aquifex aeolicus. ORGANISM Aquifex aeolicus. REFERENCE 1 (bases 1 to 13534) AUTHORS ., Graham,D.E., Overbeek,R., Snead,M.A., Keller,M., Aujay,M., Huber,R., Feldman,R.A., Short,J.M., Olson,G.J. and Swanson,R.V . Deckert,G., Warren,P.V., Gaasterland,T., Young,W.G., Lenox,A.L TITLE Aquifex aeolicus The complete genome of the hyperthermophilic bacterium JOURNAL Nature 392 (6674), 353-358 (1998) STANDARD No information REFERENCE 2 (bases 1 to 13534) AUTHORS Deckert,G., Warren,P.V., Gaasterland,T., Young,W.G., Lenox,A.L., Graham,D.E., Overbeek,R., Snead,M.A., Keller,M., Aujay,M., Huber,R., Feldman,R.A., Short,J.M., Olson,G.J. and Swanson,R.V. TITLE Direct Submission JOURNAL Submitted (25-JUL-1997) Diversa Corporation, Genomics, San Diego, CA 92121 STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: AE000751 Putative indicates no similarity to known proteins Hypothetical indicates similarity to a protein of unknown function. BASE COUNT 316 a 470 c 565 g 244 t 2781 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~gccu aUUUCCCUGA AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-CGC -GAAC-GC-- UGGC-GGC-G -UGC-CU--A ACAC-AUGCA A-GUC-GUGC 121 G--------C AG-------- ---------- ---------- ---------- ---------- 181 ---------- ---------G GUCGGCC-CC (--UU----- ---------- ---------- 241 -------UUG -)GG-GCCGG CC-------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- CUG|------ AGCG-GCAA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- UAA--CCU-A C-CCCC---A -GGAG-G-GG 421 -GAU-AA-CC C--------- ------CG-- G(-GAAA-)C -CGGG-G--C UAAUACC-CC 481 AU-AAU---- ---------- -------G-C CA-C--C--C ---GCC-(-- --------AC 541 UA-A------ -)-GGC---G CG-GU----G GC--CAAA-- ---GGGGGC- CUC-UGGCC- 601 --(------- ----UUC--- ---)------ --GGCCA-C| -GCUCC--C- G--CCU---- 661 ----GGGG-- AUG---G-|G CCCGC----- -GG|----CC C--AUCA-G- GUA-G---UU 721 GG-UG-GG-( GU-AAC-GG) -C-CCACC-A A|-GCC-UA- UGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGU ----GG-C-- CGG-C|C-AC -AGCGG-G-A 841 (CUGA-GA-C ACG)--GCCC -GCA-C-CCC -(UACG)--G GGG-GC-AG- C-A---GU-G 901 GGG-AAUCGU G-GGCAAU-- GG-GC-(GAA A)-GCC-UGA CCCC|-GCGA CGCC-GC-GU 961 G-G-GG-G-A U-GAA--G-C CC(--UG-CG --)GG-GUGU AAA--CCCC| UGUC-GG-GG 1021 --GG-GAC-- GA-UGCG-GA --CAC-GGG( U----UAAUA -----G---) CCCG-UG-UC 1081 ---------- -------C-G U-GA-CGGU- A-CCC-C-CA G-AG--GAAG ---------G 1141 -GACGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GUCC-C-- 1201 AAG-CGUUGC GC-GAAGUCA -CU-GGGC|G UAAA-GCGU- CCG-CAG-CC -G|-GU-CG- 1261 G-GU-AAG|C GGG---AUGU C-AAA-GC-C CA-CGG-C(- UC-A)A-CCG -UG-G-ACC- 1321 -GGCA-UCCC G-AAC-UGCC C-GACUU-GA GGC-----AC G-CC-CGGGC AGG-C|GGAA 1381 UU-CCCGGG- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-C UC-GGGAGG- AACA-CCGA- 1441 -A-G-GG(-G AA-G)CCAG- -CCUGCUG-- ---------- ---------- ---------G 1501 GGC--UG-UC CUGACG-GUC AG-G------ -------GA- C-GAAA-GC- CG-GGG-GA- 1561 GC-AAA-CC- -GG(AUUA-G AUAC)-CCG- ----GGUA-G UC----CCG- G-CC-GU--A 1621 AAC-C-AUGG G--CG-CU-- -------A|G -GG-CU-UGU -CC-C----- ---------- 1681 -(-UC-U-)- ---------- ---------- ---------- --------GG -GGCAG-GCU 1741 CG--CA---- --GC-(UAA- ---C)G-CG- UUAA-GCGCC C|C|G-CCU- G-GGGAGUAC 1801 GGG-C---(G CAA)---G-C CU-GAAACUC -AAA-GGAAU UG-GCGGG-G -G-C-CC--G 1861 C-A--CA-AC CGGUGG-AGC G-U-CU-GGU -UCAAUU-CG -(AUGCUA-A C)--CGAAGA 1921 A-CCUUA-CC CGG-GC-UUG ACA-UG|--- -------C-C ---GGGG--- -AG----ACU 1981 -CCG-C--(- GAAA-)-GCG -G-AGUUGU- GG-------- AAGUC----- --(cc----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------u ag)------- GACUU----- ----UC---| CCC-CG-GCA |---C|A--G 2161 GU-GG-UGCA UG|G-CCG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-CU-G |-CC--CCC- 2281 AG--UUGC-U AC-CCC---- ---------- ---------- ----(---GU ---UUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GGG|A 2701 G-CA-CU-C- U-GGG-GG-G A-CC-G-CCG --GC(-GA-U AA)-GCC-G- -GAGG-A-AG 2761 G-GG-GGG-A UG-ACG--UC -A-GGUC-AG UAU-G-CC-C UUUAU-G-CC -CG--GGGC- 2821 C-ACA-CA-G GCG--CUACA GUGGC-C-GG -GA--CAAUG GGA-U-G-C- GA-CCC-C(G 2881 -UAA)GGGG- ---------- GA-GCUAA-U CCC-u-AAAC -CC-G-GUC- AUGGUGCGGA 2941 U-UGGGGGC- (UGAAAC-U- C)-GCCCCCA -UGAAGC-CG -GAAU-CGG- -UAGUA-ACG 3001 GG-GUA-(UC -AGCGAU)-G UCC-CCGUG- AAUAC-GUU- CUC-GGG-CC UUGCA----C 3061 ACACCGCCC- GUC-ACG--- --CCA-CGGA A--GU-CGG- UC-CG-GCCG -GAA-G-UCC 3121 C-CGA-G-CU -AA-CCGGCU CC-------- ---------- -----(---- -UUCG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 -----GGAGC CGGAGG-C-A G-GG-GC-CG A-UGGC-CGG GCC-GG-CG- ACU-GGGG-C 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAG G(GGA-A)CC UGCGGC--UG GAUCACCUCC 3361 UUUA|UAA~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS A.aeolic.2 4376 bp RNA RNA 30-OCT-1997 DEFINITION Aquifex aeolicus.; . ACCESSION AE0007 9 AE00 657 KEYWORDS . SOURCE Aquifex aeolicus. ORGANISM Aquifex aeolicus. REFERENCE 1 (bases 1 to 15737) AUTHORS . Deckert,G., Warren,P.V., Gaasterland,T., Young,W.G., Lenox,A.L ., Graham,D.E., Overbeek,R., Snead,M.A., Keller,M., Aujay,M., Huber,R., Feldman,R.A., Short,J.M., Olson,G.J. and Swanson,R.V TITLE Aquifex aeolicus The complete genome of the hyperthermophilic bacterium JOURNAL Nature 392 (6674), 353-358 (1998) STANDARD No information REFERENCE 2 (bases 1 to 15737) AUTHORS Deckert,G., Warren,P.V., Gaasterland,T., Young,W.G., Lenox,A.L., Graham,D.E., Overbeek,R., Snead,M.A., Keller,M., Aujay,M., Huber,R., Feldman,R.A., Short,J.M., Olson,G.J. and Swanson,R.V. TITLE Direct Submission JOURNAL Submitted (25-JUL-1997) Diversa Corporation, Genomics, San Diego, CA 92121 STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: AE000709 Putative indicates no similarity to known proteins Hypothetical indicates similarity to a protein of unknown function. BASE COUNT 313 a 468 c 564 g 242 t 2789 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~UUUCCCUGA AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-CGC -GAAC-GC-- UGGC-GGC-G -UGC-CU--A ACAC-AUGCA A-GUC-GUGC 121 G--------C AG-------- ---------- ---------- ---------- ---------- 181 ---------- ---------G GUCGGCC-CC (--UU----- ---------- ---------- 241 -------UUG -)GG-GCCGG CC-------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- CUG|------ AGCG-GCAA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- UAA--CCU-A C-CCCC---A -GGAG-G-GG 421 -GAU-AA-CC C--------- ------CG-- G(-GAAA-)C -CGGG-G--C UAAUACC-CC 481 AU-AAU---- ---------- -------G-C CA-C--C--C ---GCC-(-- --------AC 541 UA-A------ -)-GGC---G CG-GU----G GC--CAAA-- ---GGGGGC- CUC-UGGCC- 601 --(------- ----UUC--- ---)------ --GGCCA-C| -GCUCC--C- G--CCU---- 661 ----GGGG-- AUG---G-|G CCCGC----- -GG|----CC C--AUCA-G- GUA-G---UU 721 GG-UG-GG-( GU-AAC-GG) -C-CCACC-A A|-GCC-UA- UGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGU ----GG-C-- CGG-C|C-AC -AGCGG-G-A 841 (CUGA-GA-C ACG)--GCCC -GCA-C-CCC -(UACG)--G GGG-GC-AG- C-A---GU-G 901 GGG-AAUCGU G-GGCAAU-- GG-GC-(GAA A)-GCC-UGA CCCC|-GCGA CGCC-GC-GU 961 G-G-GG-G-A U-GAA--G-C CC(--UG-CG --)GG-GUGU AAA--CCCC| UGUC-GG-GG 1021 --GG-GAC-- GA-UGCG-GA --CAC-GGG( U----UAAUA -----G---) CCCG-UG-UC 1081 ---------- -------C-G U-GA-CGGU- A-CCC-C-CA G-AG--GAAG ---------G 1141 -GACGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GUCC-C-- 1201 AAG-CGUUGC GC-GAAGUCA -CU-GGGC|G UAAA-GCGU- CCG-CAG-CC -G|-GU-CG- 1261 G-GU-AAG|C GGG---AUGU C-AAA-GC-C CA-CGG-C(- UC-A)A-CCG -UG-G-ACC- 1321 -GGCA-UCCC G-AAC-UGCC C-GACUU-GA GGC-----AC G-CC-CGGGC AGG-C|GGAA 1381 UU-CCCGGG- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-C UC-GGGAGG- AACA-CCGA- 1441 -A-G-GG(-G AA-G)CCAG- -CCUGCUG-- ---------- ---------- ---------G 1501 GGC--UG-UC CUGACG-GUC AG-G------ -------GA- C-GAAA-GC- CG-GGG-GA- 1561 GC-AAA-CC- -GG(AUUA-G AUAC)-CCG- ----GGUA-G UC----CCG- G-CC-GU--A 1621 AAC-C-AUGG G--CG-CU-- -------A|G -GG-CU-UGU -CC-C----- ---------- 1681 -(-UC-U-)- ---------- ---------- ---------- --------GG -GGCAG-GCU 1741 CG--CA---- --GC-(UAA- ---C)G-CG- UUAA-GCGCC C|C|G-CCU- G-GGGAGUAC 1801 GGG-C---(G CAA)---G-C CU-GAAACUC -AAA-GGAAU UG-GCGGG-G -G-C-CC--G 1861 C-A--CA-AC CGGUGG-AGC G-U-CU-GGU -UCAAUU-CG -(AUGCUA-A C)--CGAAGA 1921 A-CCUUA-CC CGG-GC-UUG ACA-UG|--- -------C-C ---GGGG--- -AG----ACU 1981 -CCG-C--(- GAAA-)-GCG -G-AGUUGU- GG-------- AAGUC----- --(cc----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------u ag)------- GACUU----- ----UC---| CCC-CG-GCA |---C|A--G 2161 GU-GG-UGCA UG|G-CCG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-CU-G |-CC--CCC- 2281 AG--UUGC-U AC-CCC---- ---------- ---------- ----(---GU ---UUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GGG|A 2701 G-CA-CU-C- U-GGG-GG-G A-CC-G-CCG --GC(-GA-U AA)-GCC-G- -GAGG-A-AG 2761 G-GG-GGG-A UG-ACG--UC -A-GGUC-AG UAU-G-CC-C UUUAU-G-CC -CG--GGGC- 2821 C-ACA-CA-G GCG--CUACA GUGGC-C-GG -GA--CAAUG GGA-U-G-C- GA-CCC-C(G 2881 -UAA)GGGG- ---------- GA-GCUAA-U CCC-u-AAAC -CC-G-GUC- AUGGUGCGGA 2941 U-UGGGGGC- (UGAAAC-U- C)-GCCCCCA -UGAAGC-CG -GAAU-CGG- -UAGUA-ACG 3001 GG-GUA-(UC -AGCGAU)-G UCC-CCGUG- AAUAC-GUU- CUC-GGG-CC UUGCA----C 3061 ACACCGCCC- GUC-ACG--- --CCA-CGGA A--GU-CGG- UC-CG-GCCG -GAA-G-UCC 3121 C-CGA-G-CU -AA-CCGGCU CC-------- ---------- -----(---- -UUCG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 -----GGAGC CGGAGG-C-A G-GG-GC-CG A-UGGC-CGG GCC-GG-CG- ACU-GGGG-C 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAG G(GGA-A)CC UGCGGC--UG GAUCACCUCC 3361 UUUA|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Aqu.pyroph 4376 bp RNA RNA 02-JUL-1998 DEFINITION Aquifex pyrophilus str. Kol5a. ACCESSION No information KEYWORDS No information. SOURCE Aquifex pyrophilus str. Kol5a. ORGANISM Aquifex pyrophilus. REFERENCE 1 AUTHORS Burggraf,S., Olsen,G.J., Stetter,K.O. and Woese,C.R. TITLE A phylogenetic analysis of Aquifex pyrophilus JOURNAL Syst. Appl. Microbiol. 15, 352-356 (1992) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: M83548 isolate_name= Kol5a BASE COUNT 317 a 454 c 561 g 232 t 2812 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~NUUCCCUGA AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-CGC -GAAC-GC-- UGGC-GGC-G -UGC-CU--A ACAC-AUGCA A-GUC-GUGC 121 G--------C AG-------- ---------- ---------- ---------- ---------- 181 ---------- ---------G CUCGCUC-CC (--UC----- ---------- ---------- 241 --------U- -)GG-GAGCG GGU------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- CUG|------ AGCG-GCAA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- UAA--CCU-A C-CCCC---A -GGAG-G-GG 421 -GAU-AA-CC C--------- ------CG-- G(-GAAA-)C -CGGG-G--C UAAUACC-CC 481 AU-AAA---- ---------- -------G-C CG-C--C--C ---GCC-(-- --------AC 541 UA-A------ -)-GGC---G AG-GC----G GC--CAAA-- ---GGGGGC- CUC-UGGGC- 601 --(------- ----UCU--- ---)------ --GCCCA-A| -GCUCC--C- G--CCU---- 661 ----GGGG-- AUG---G-|G CCCGC----- -GG|----CC C--AUCA-G- GUA-G---UU 721 GG-UG-GG-( GU-AAC-GG) -C-CCACC-A A|-GCC-UA- UGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGU ----GG-C-- CGG-C|C-AC -AGCGG-G-A 841 (CUGA-GA-C ACG)--GCCC -GCA-C-CCC -(UACG)--G GGG-GC-AG- C-A---GU-G 901 GGG-AAUCGU G-GGCAAU-- GG-GC-(GAA A)-GCC-UGA CCCC|-GCGA CGCC-GC-GU 961 G-G-GG-G-A A-GAA--G-C CC(--UG-CG --)GG-GUGU AAA--CCCC| UGUC-GG-GG 1021 --GG-GAC-- GA-AGGG-AC --UGU-GGG( U----UAAUA -----G---) CCCA-CA-GU 1081 ---------- -------C-U U-GA-CGGU- A-CCC-C-CA G-AG--GAAG ---------G 1141 -GACGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GUCC-C-- 1201 GAG-CGUUGC GC-GAAGUCA -CU-GGGC|G UAAA-GCGU- CCG-CAG-CC -G|-GU-CG- 1261 G-GU-AAG|C GGG---AUGU C-AAA-GC-C CA-CGG-C(- UC-A)A-CCG -UG-G-AAU- 1321 -GGCA-UCCC G-AAC-UGCC C-GACUU-GA GGC-----AC G-CC-CGGGC AGG-C|GGAA 1381 UU-CCCGGG- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-C UC-GGGAGG- AACA-CCGA- 1441 -A-G-GG(-G AA-G)CCAG- -CCUGCUG-- ---------- ---------- ---------G 1501 GGC--UG-UC CUGACG-GUC AG-G------ -------GA- C-GAAA-GC- CG-GGG-GA- 1561 GC-GAA-CC- -GG(AUUA-G AUAC)-CCG- ----GGUA-G UC----CCG- G-CC-GU--A 1621 AAC-C-AUGG G--CG-CU-- -------A|G -GG-CU-UGU -CC-C----- ---------- 1681 -(-UU-U-)- ---------- ---------- ---------- --------GG -GGCAG-GCU 1741 CG--CA---- --GC-(UAA- ---C)G-CG- UUAA-GCGCC C|C|G-CCU- G-GGGAGUAC 1801 GGG-C---(G CAA)---G-C CU-GAAACUC -AAA-GGAAU UG-GCGGG-G -G-C-CC--G 1861 C-A--CA-AC CGGUGG-AGC G-U-CU-GGU -UCAAUU-CG -(AUGCUA-A C)--CGAAGA 1921 A-CCUUA-CC CGG-GC-UUG ACA-UG|--- -------C-C ---GGGG--- -AG----ACU 1981 -CCG-C--(- GAAA-)-GCG -G-AGUUGU- GG-------- AAGUC----- --(UC----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------U --)------- GACUU----- ----CC---| CCC-CG-GCA |---C|A--G 2161 GU-GG-UGCA UG|G-CCG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-CU-G |-CC--CCU- 2281 AG--UUGC-U AC-CCC---- ---------- ---------- ----(---GA ---GAG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GGG|A 2701 G-CA-CU-C- U-AGG-GG-G A-CC-G-CCG --GC(-GA-U AA)-GCC-G- -GAGG-A-AG 2761 G-GG-GGG-A UG-ACG--UC -A-GGUC-AG UAU-G-CC-C UUUAU-G-CC -CG--GGGC- 2821 C-ACA-CA-G GCG--CUACA GUGGC-C-GG -GA--CAAUG GGA-A-G-C- GA-CCC-C(G 2881 -CAA)GGGG- ---------- GA-GCUAA-U CCCAG-AAAC -CC-G-GUC- AUGGUGCGGA 2941 U-UGGGGGC- (UGAAAC-U- C)-GCCCCCA -UGAAGC-CG -GAAU-CGG- -UAGUA-ACG 3001 GG-GUA-(UC -AGCGAU)-G UCC-CCGUG- AAUAC-GUU- CUC-GGG-CC UUGCA----C 3061 ACACCGCCC- GUC-ACG--- --CCA-CGGA A--GU-CGG- UC-CG-GCCG -GAA-G-UCC 3121 C-CGA-G-CU -AA-CCGGCC C--------- ---------- -----(---- UUUUU----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ------GGGC CGGGGG-C-A G-GG-GC-CG A-UGGC-CGG GCC-GG-CG- ACU-GGGG-C 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAG G(GGA-A)CC UGC....... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Hdg.acidp 4376 bp RNA RNA 02-JUL-1998 DEFINITION Hydrogenobacter acidophilus str. 3H-1. ACCESSION No information KEYWORDS No information. SOURCE Hydrogenobacter acidophilus str. 3H-1. ORGANISM Hydrogenobacter acidophilus. REFERENCE 1 AUTHORS Shima,S., Yanagi,M. and Saiki,H. TITLE The phylogenetic position of Hydrogenobacter acidophilus based on 16S rRNA sequence analysis JOURNAL FEMS Microbiol. Lett. 119, 119-122 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: D16296|g505079 isolate_name= 3H-1 BASE COUNT 353 a 339 c 443 g 297 t 2944 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .....G-CGC -GAAC-GC-- UGNC-GGC-A -UGC-CU--A ACAC-AUGCA A-GUC-GAAC 121 G--------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- GAAAGUG-GG (--GC----- ---------- ---------- 241 --------AA -)CU-CACUU UC-------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|------ AGUG-GCAA- 361 -A-CG-GG-U GAGU---AAC -GC-GUGAA- UAA--CCU-G C-CUUU---G -AGAA-G-GG 421 -GAU-AA-CU G--------- ------UC-- C(-GAAA-)G -GAUA-G--C UAAUACC-CU 481 AU-AAU---- ---------- -------G-U CC-U--U--U ---GUC-(-- --------AC 541 UA-A------ -)-GAC---A -A-AG----G AU--GAAA-- ---GCGAGGC U--------- 601 --(------- ---GUUAA-- ---)------ --------A| GGCUUC--G- G--CUC---- 661 ----AAAG-- AGG---G-|G UUCGC----- -GU|----CC U--AUCA-G- GUA-G---UU 721 GG-UG-GG-( GU-AAU-GG) -C-CUACC-A A|-GCC-AA- UGA------- -----CG-GG 781 U-AG-C-UG| -G-UCU--(U -AGA)-GGAU ----GA-U-- CAG-C|C-AC -AGUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -GCA-C-CCC -(UACG)--G GGG-GC-AG- C-A---GU-G 901 GGG-AAUCGU G-GGCAAU-- GG-AC-(GAA A)-GUC-UGA CCCC|-GCAA UGCC-GC-GU 961 G-A-GG-G-A A-GAA--N-N CC(--UU-CG --)GG-GUGU AAA--CCUC| UGUC-AG-AU 1021 --GG-GAA-- GA-UGGG-AC --CAA-GGG( C----UAAUA -----C---) CUCU-UG-GU 1081 ---------- -------C-U U-GA-CGGU- A-CCA-U-CA G-AG--GAAG ---------G 1141 -GACGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GUCC-C-- 1201 GAG-CGUUGC GC-GAUGUUA -CU-GGGC|G UAAA-GCGU- CCG-UAG-CU -G|-GU-UU- 1261 C-GU-AAG|C GGA---UUGU C-AAA-AC-C CG-AAG-C(- UC-A)A-CUU -CG-G-CAA- 1321 -GGCA-UUCC G-AAC-UGCG U-UACUU-GA GUC-----CU G-UU-CAGGU AGG-C|GGAA 1381 UU-CCCGGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UC-GGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CCUACUG-- ---------- ---------- ---------G 1501 GAC--GG-UA CUGACG-GUC AU-G------ -------GA- C-GAAA-GC- UG-GGG-GA- 1561 GC-AAA-CC- -GG(AUUA-G AUAC)-CCG- ----GGUA-G UC----CCA- G-CU-GU--A 1621 AAC-G-AUGG A--UG-UU-- -------A|G -GU-GU-AGU -GA------- ---------- 1681 -(UAA-CU)- ---------- ---------- ---------- ---------U -CGCUG-CAC 1741 CC--CA---- --GC-(UAA- ---C)G-CG- UUAA-ACAUC C|C|G-CCU- G-GGGAGUAC 1801 GGG-C---(G CAA)---G-C CU-GAAACUC -AAA-GGAAU UG-GCGGG-G -G-C-CC--G 1861 C-A--CA-AC CGGUGG-AGC G-U-CU-GGU -UUAAUU-CG -(AUGCUA-A C)--CGAAAA 1921 A-CCUUA-CC AGG-GU-UUG AAA-UG|--- -------G-U ---AGGA--- -AA----GGC 1981 -UGU-C--(- GAAA-)-GAU -A-GCCGUG- ---------U UUCCC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------U U-)------- GGGAGA---- ----AA---| UCC-UA-CCA |---C|A--G 2161 GU-GG-UGCA UG|G-CCG-- UCG-UCA|-G C-U---CG-U |GU-U(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UC--CUU- 2281 AU--UUGC-U UC-CUC---- ---------- ---------- ----(---UU ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----AGG|U 2701 G-CU-CU-A- U-AAG-GA-G A-CU-G-CCG --GC(-GA-C AA)-GCC-G- -GAGG-A-AG 2761 G-AG-GGG-G CG-ACG--UC -A-GGUC-AG UAU-G-CC-C UUUAU-G-CU -CU--GGGC- 2821 U-ACA-CA-G GCG--CUACA GUGGC-A-AG -GA--CAAUG AGU-N-G-C- AA-GAG-C(G 2881 -CGA)CUCA- ---------- GA-GCUAA-U CUCAC-AAAC -CU-U-GUC- GUGGUGCGAA 2941 U-UGAAGGU- (UGAAAC-U- C)-ACCUUCA -UGAAGC-CG -GAAU-CGG- -UAGUA-AUG 3001 GC-GUA-(UC -AGCUAU)-G UCG-CCGUG- AAUAC-GUU- CCC-GGG-CC UUGCA----C 3061 ACACCGCCC- GUC-ACG--- --CCA-CGGA A--GC-UGG- UG-UU-UUCG -GAA-G-UCC 3121 U-CGA-G-CU -AA-CCC... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS 2.2-THERMO 4376 bp RNA RNA 09-JAN-1999 DEFINITION 2.2 THERMOTOGALES. ACCESSION No information KEYWORDS No information. SOURCE 2.2 THERMOTOGALES. ORGANISM 2.2 THERMOTOGALES. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 0 a 0 c 0 g 0 t 4376 others ORIGIN 1 x~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~-- ------~~~~ 541 ~~~~~~---- -~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~---~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- 1681 -(~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- -------~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~----~~~ 1981 ~~~~-~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~--- --~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~------ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~---~~ ---~~~--~~ 2341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- 3181 ---------- ---------- ---------- ------~)~~ ~~~~~~~~~~ ~~~~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS 2.2.1-GEOT 4376 bp RNA RNA 09-JAN-1999 DEFINITION 2.2.1 GEOTOGA_GROUP. ACCESSION No information KEYWORDS No information. SOURCE 2.2.1 GEOTOGA_GROUP. ORGANISM 2.2.1 GEOTOGA_GROUP. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 0 a 0 c 0 g 0 t 4376 others ORIGIN 1 x~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~-- ------~~~~ 541 ~~~~~~---- -~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~---~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- 1681 -(~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- -------~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~----~~~ 1981 ~~~~-~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~--- --~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~------ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~---~~ ---~~~--~~ 2341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- 3181 ---------- ---------- ---------- ------~)~~ ~~~~~~~~~~ ~~~~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Got.petrae 4376 bp RNA RNA 02-JUL-1998 DEFINITION Geotoga petraea str. T5 ATCC 51226. ACCESSION No information KEYWORDS No information. SOURCE Geotoga petraea str. T5 ATCC 51226. ORGANISM Geotoga petraea. REFERENCE 1 AUTHORS Davey,M.E., Wood,W.A., Key,R., Nakamura,K. and Stahl,D.A. TITLE Geotoga and petrotoga: Two new genera, representing a new lineage in the bacterial line of descent (distantly related to the Thermotogales) JOURNAL Syst. Appl. Microbiol. 16, 191-200 (1993) STANDARD No information COMMENTS Organism information Culture collection: ATCC 51226 Sequence information (bases 1 to 4376) Corresponding GenBank entry: L10658 isolate_name= T5 BASE COUNT 407 a 334 c 482 g 254 t 2899 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~UGGAAGA AGGGUU(U-G A)U-CCU|-G 61 GCUCAG-GGU -GAAC-GC-- UGGC-GGC-G -CGC-CU--A ACAC-AUGCA A-GUC-GAAC 121 G--GA----G AA-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --AGGGG-AG (--CU----- ---------- ---------- 241 --------UG -)CU-CCUUG ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------A- GUA|-UC--- AGUG-GCGN- 361 -A-CG-GG-U GAGU---AAU -AC-GUAGG- G-A--CCU-A C-CUCA---C -GGAC-A-GG 421 -GAU-AG-CU A--------- ------CU-- G(-GAAA-)C -GGUA-G--G UAAGACC-GG 481 AU-AAU---- ---------- ---------- ---------- ---AUC-(-- --------GA 541 GA-------- -)-GAU---- ---------- ----AAAA-- ---GC----- ---------- 601 --(------- --AGAGNA-- ---)------ ---------| -----G--C- G--CCG---- 661 ----GGAG-- AGG---G-|G CCUNC----- -GA|----CC C--AUCA-G- GUA-G---UU 721 GG-UA-GG-( GU-NAA-AG) -C-CUACC-N A|-GCC-GA- CGA------- -----CG-GG 781 U-AG-C-CG| -A-UGU--(G -AGA)-GCAU ----GA-U-- CGG-C|C-AC -AAGGG-A-A 841 (CUGA-GA-C ACG)--GAUC -CUA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GC-AC-(GGA A)-GUG-UGA UCCA|-GCGA CGCC-GC-GU 961 G-A-AG-G-A A-GAA--G-U CC(--UU-CG --)GG-AUGU AAA--CUUC| UGAA-CU-UA 1021 --CA-GAA-- UA-ACAG-CA --UAA-G--( -----GGWA- ---------) --CU-UA-UG 1081 ---------- -------U-A U-GA-AGGU- A-AGU-A-AG G-AA---AAG ---------C 1141 -CCCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) G-A-C-GUAG |-GGGG-C-- 1201 GAG-CGUUGC CC-GGAAUCA -CU-GGGC|G UAAA-GGGG- GCG-UAG-GC -G|-GU-CU- 1261 C-AA-AAG|U CAG---GUGU G-AAA-UG-U CA-CUG-C(- UC-A)A-CGG -UG-U-CAG- 1321 -UGCG-CAUG A-AAC-UGUG A-GACUU-GA GGG-----GA C-CA-GAGGU AGA-C|GGAA 1381 UU-ACCUGA- GUA-GGG(-G UGAAA)-UCC -GU-AGAU-A CA-GGUAAG- AACG-CCAG- 1441 -U-G-GG(-G AA-G)CCGG- -UCUACUG-- ---------- ---------- ---------G 1501 GGU--GA-CC CUGACG-CUG AG-G------ -------CC- C-GAAA-GC- UA-GGG-GA- 1561 GC-GAA-CC- -GG(AUUA-G AUAC)-CCG- ----GGUA-G UC----CUA- G-CA-GU--A 1621 AAC-G-AUGC U--CA-CU-- -------A|G -GU-GU-GGG -GC-A----- ---------- 1681 -(AGA-AA)- ---------- ---------- ---------- ---------G -CUCCG-UGC 1741 UG--AA---- --GC-(AAA- ---C)G-CG- AUAA-GUGAG C|C|G-CCU- G-GGGAGUAC 1801 GCC-C---(G CAA)---G-G GU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-U-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-A C)--CGAAGA 1921 A-CCUUA-CC AGG-GC-UUG ACA-UG|--- ---------G ---AGAC--- -GA----GAG 1981 -GUA-A--(- GAAA-)-CUA -U-CUCAA-- CC-------- UAUAC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------A G-)------- GUAUA----- ----GG--G| AUC-UC-ACA |---C|A--G 2161 GU-GG-UGCA CG|G-CCG-- UCG-UCA|-G C-U---CG-U |GC-C(-GUG A)-GGUGU-U 2221 GG-G-(UUAA -GU)-CCCAC AA-------- CGAG-C--GC AACCC-CU-A |-UA--GUU- 2281 AG--UUGC-C AG-CA----- ---------- ---------- ---A(---GA ---GAG--)A 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----UGG|G 2701 C-UA-CA-C- U-AGC-UA-G A-CA-G-CCG --UC(-GA-C GA)-GAC-G- -GAGG-A-AG 2761 G-AG-GGG-A UG-ACG--UC -A-GGUA-AG CGU-G-CC-C CUAAU-G-CU -CU--GGGC- 2821 G-ACA-CA-C GUG--CUACA AUGGU-G-AG -GG--CAAAA GGC-A-G-C- GA-AGU-C(G 2881 -CGA)GGCA- ---------- GA-GCGAA-U CCAAG-AAAC -CU-C-AUC- GUAAUUCGGA 2941 U-UGCAGGC- (UGAAAC-C- C)-GCCUGCA -UGAAAC-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-AGG-(UC -AGCCAA)-A CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACG--- --CCA-CCCG A--GU-UGG- AG-AC-ACCU -GAA-AAGGG 3121 A......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... ....GGGG-C 3301 G---AAGUC- GUAA-CAAGG UAGGU-GUAC C(GGA-A)GG UGCNCC--UG GAUCACCUCC 3361 UUUC|U~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Got.subter 4376 bp RNA RNA 02-JUL-1998 DEFINITION Geotoga subterranea str. CC-1 ATCC 51225. ACCESSION No information KEYWORDS No information. SOURCE Geotoga subterranea str. CC-1 ATCC 51225. ORGANISM Geotoga subterranea. REFERENCE 1 AUTHORS Davey,M.E., Wood,W.A., Key,R., Nakamura,K. and Stahl,D.A. TITLE Geotoga and petrotoga: Two new genera, representing a new lineage in the bacterial line of descent (distantly related to the Thermotogales) JOURNAL Syst. Appl. Microbiol. 16, 191-200 (1993) STANDARD No information COMMENTS Organism information Culture collection: ATCC 51225 Sequence information (bases 1 to 4376) Corresponding GenBank entry: L10659 isolate_name= CC-1 BASE COUNT 420 a 334 c 491 g 283 t 2848 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~UGGAAGA AGGGUU(U-G A)U-CCU|-G 61 GCUCAG-GGU -GAAC-GC-- UGGC-GGC-G -CGC-CU--A ACAC-AUGCA A-GUC-GAAC 121 G--GA----G AA-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --AGAGG-AG (--CU----- ---------- ---------- 241 --------UG -)CU-CCUUG ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------A- GUA|-UU--- AGUG-GCGA- 361 -A-CG-GG-U GAGU---AGA -AC-GUAGG- A-A--CCU-G C-CUAA---C -GGAC-U-GG 421 -GAU-AG-CU A--------- ------CU-- G(-GAAA-)C -GGUA-G--G UAAUACU-GG 481 AU-AAA---- ---------- ---------- ---------- ---AUC-(-- --------GA 541 GA-------- -)-GAU---- ---------- ----AAAA-- ---GCU---- ---------- 601 --(------- ---UAGA--- ---)------ ---------| ----AG--C- G--CCG---- 661 ----GGAG-- AGG---G-|G UCUAC----- -GA|----CC C--AUCA-G- GUA-G---UU 721 GG-UA-GG-( GU-AAG-AG) -C-CUACC-N A|-GCC-GA- CGA------- -----CG-GG 781 U-AG-C-CG| -A-UGU--(G -AGA)-GCAU ----GA-U-- CGG-C|C-AC -AAGGG-A-A 841 (CUGA-GA-C ACG)--GUUC -CUA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUUUU G-GACAAU-- GC-AC-(GGA A)-GUG-UGA UCCA|-GCGA CGCC-GC-GU 961 G-A-AG-G-A A-GAA--G-U CC(--UU-CG --)GG-AUGU AAA--CUUC| UGAA-CU-UA 1021 --CA-GAA-- UA-ACAG-CA --UAA-G--( -----GGGA- ---------) --CU-UA-UG 1081 ---------- -------U-A U-GA-AGGU- A-AGU-A-AG G-AA---AAG ---------C 1141 -CCCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) G-A-C-GUAG |-GGGG-C-- 1201 GAG-CGUUGC CC-GGAAUCA -CU-GGGC|G UAAA-GGGG- GCG-UAG-GC -G|-GU-CU- 1261 C-AU-AAG|U CAG---GUGU G-AAA-UG-U CA-CUG-C(- UC-A)A-CGG -UG-U-CAG- 1321 -UGCG-CAUG A-AAC-UGUG A-GACUU-GA GGG-----UA C-CA-GAGGU AGA-C|AGAA 1381 UU-ACCUGA- GUA-GGG(-G UGAAA)-UCC -GU-AGAU-A CA-GGUAAG- AAUG-CCAG- 1441 -U-G-GG(-G AA-G)CCGG- -UCUACUG-- ---------- ---------- ---------G 1501 GGU--GA-CC CUGACG-CUG AG-G------ -------CC- C-GAAA-GC- UA-GGG-UA- 1561 GC-AAA-CC- -GG(AUUA-G AUAC)-CCG- ----GGUA-G UC----CUA- G-CA-GU--A 1621 AAC-G-AUGC U--CA-CU-- -------A|G -GU-GU-GGG -GC-A----- ---------- 1681 -(AGA-AA)- ---------- ---------- ---------- ---------G -CUCCG-UGC 1741 UG--AA---- --GC-(AAA- ---C)G-CG- AUAA-GUGAG C|C|G-CCU- G-GGGAGUAC 1801 GCC-C---(G CAA)---G-G GU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-U-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-A C)--CGAAGA 1921 A-CCUUA-CC AGG-GC-UUG ACA-UG|--- ---------G ---AGAU--- -AA----GGC 1981 -AUA-A--(- GAAA-)-UUA -U-GUCAA-- CC-------- UGUAU----- --(GU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------A A-)------- AUAUA----- ----GG--A| GUC-UC-ACA |---C|A--G 2161 GU-GG-UGCA CG|G-CCG-- UCG-UCA|-G C-U---CG-U |GC-C(-GUG A)-GGUGU-U 2221 GG-G-(UUAA -GU)-CCCAC AA-------- CGAG-C--GC AACCC-CU-A |-UU--GUU- 2281 AG--UUGC-C AU-CA----- ---------- ---------- ---U(---UA ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----UGG|G 2701 C-UA-CU-C- U-AGC-GA-G A-CA-G-CCG --UC(-GA-C GA)-GAC-G- -GAGG-A-AG 2761 G-AG-GGG-A UG-ACG--UC -A-GGUA-AG CGU-G-CC-C CUUAU-G-CU -CU--GGGC- 2821 G-ACA-CA-C GUG--CUACA AUGGU-G-AG -GG--CAAAA GGC-A-G-C- GA-AGC-C(G 2881 -CGA)GGUA- ---------- GA-GCGAA-U CCUAU-AAAC -CU-C-AUC- GUAAUUCGGA 2941 U-UGCAGGC- (UGAAAC-C- C)-GCCUGCA -UGAAAC-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-AGG-(UC -AGCCAA)-A CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACG--- --CCA-CCCG A--GU-UGG- AG-AC-ACCU -GAA-AAGGG 3121 A-AGA-A-GU -AA-CC---- ---------- ---------- -----(---- -GAAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -NGGGC-U-A A-UC-UCUUC A-GGGU-GGA GCU-AG-CG- AGG-GGGG-C 3301 G---AAGUC- GUAA-CAAGG UAGGU-GUAC C(GGA-A)GG UGCGCC--UG GAUCACCUCC 3361 UUUC|U~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Pet.miothr 4376 bp RNA RNA 02-JUL-1998 DEFINITION Petrotoga miotherma str. 42-6 ATCC 51224. ACCESSION No information KEYWORDS No information. SOURCE Petrotoga miotherma str. 42-6 ATCC 51224. ORGANISM Petrotoga miotherma. REFERENCE 1 AUTHORS Davey,M.E., Wood,W.A., Key,R., Nakamura,K. and Stahl,D.A. TITLE Geotoga and petrotoga: Two new genera, representing a new lineage in the bacterial line of descent (distantly related to the Thermotogales) JOURNAL Syst. Appl. Microbiol. 16, 191-200 (1993) STANDARD No information COMMENTS Organism information Culture collection: ATCC 51224 Sequence information (bases 1 to 4376) Corresponding GenBank entry: L10657 isolate_name= 42-6 BASE COUNT 373 a 274 c 431 g 249 t 3049 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~AGGAUNN AGGGUU(U-N A)U-CCU|-N 61 GCUCAG-GGU -AAAC-GC-- UNGC-GGC-G -UGC-GU--A ACAC-AUGCA A-GUC-GAAC 121 G--------- ---------- ---------- ---------- ---------- ---------- 181 ---------- --------GG UUAUACA-UC (--UU----- ---------- ---------- 241 --------CG -)GA-UGUAU AAUC------ ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|------ AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAA -AG-GUAGG- G-A--CCU-A C-CCCG---A -GGAC-A-GA 421 -GAU-AG-CU A--------- ------CU-- G(-GAAA-)C -GGUA-G--G UNAACUC-UN 481 AU-AAG---- ---------- ---------- ---------- ---CCC-(-- --------GA 541 GA-------- -)-GGG---- ---------- ----GAAA-- ---GUG---- ---------- 601 --(------- ---GGNG--- ---)------ ---------| ----UC--A- G--CCU---- 661 ----UGGG-- AUN---G-|A CCUNC----- -UA|----UC C--AUCA-G- GUA-G---UU 721 GG-UG-AG-( GU-AAA-GG) -C-UYACC-N A|-GCC-GA- UGA------- -----CG-GA 781 U-AA-C-CG| -G-UGU--(G -AGA)-GCAU ----GN-A-- CGG-U|C-AC -AAGGG-C-A 841 (CUGA-GA-C ACG)--GGCC -NNN-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GC-(GAA A)-GCC-UNA UCCA|-GCGA CGCC-GC-GU 961 G-A-AG-G-A A-GAA--G-U CC(--UU-CG --)GG-AUGU AAA--CUUC| UGAA-CU-AA 1021 --UC-GAA-- UA-AGNG-GG --UAG-UG-( -----GACA- ---------) -CAC-UA-CA 1081 ---------- -------G-A A-GA-AGGU- A-GAU-U-AG G-AA---AAG ---------U 1141 -CCCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) G-A-C-GUAG |-GNGN-C-- 1201 NAG-CGUUGC CC-GGAAUCA -CU-GGGU|G UAAA-GGGG- ACG-UAG-GC -G|-GA-UG- 1261 A-UC-AAG|U CAU---CUGU G-AAA-A--- GA-UUG-C(- UC-A)A-CGA -UU-G-GCU- 1321 -UGCG-GAUG A-AAC-UNGU N-NUCUU-GG GCG-----UA G-CA-GAGGU AGA-C|GGAA 1381 UU-ACCUGA- GUA-GGG(-G UGAAA)-UCC -GC-AGAU-A CA-GGUAAG- AAGG-CCGG- 1441 -U-G-AA(-G AA-G)UUGG- -UCUACUG-- ---------- ---------- ---------G 1501 GCU--AC-AG CUGACG-CUG AG-G------ -------UC- C-GAAA-GC- CA-GGG-GA- 1561 GC-GAA-CC- -GG(AUUA-G AUAC)-CCG- ----GGUA-G UC----CUA- G-CU-GU--A 1621 AAC-G-AUGC U--CA-CU-- -------A|G -GU-GU-AGG -GA-GC---- ---------- 1681 -(GAA-AG)- ---------- ---------- ---------- -------ACU -CUCUG-UGC 1741 UG--AA---- --GC-(GAA- ---C)G-CG- MUAA-GUGAG C|C|A-CCU- G-GGGAGUAC 1801 GUC-C---(G CAA)---G-G AU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-U-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCUA-A C)--CGAAGA 1921 A-CCUUA-CC AGG-GA-UUG ACA-UG|--- ---------U ---AACU--- -GA----AGG 1981 -UAG-A--(- GAAA-)-UCU -A-CUNG--- CC-------- UG-CC----- --(GU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------A A-)------- GG-UN----- ----GG--A| GGU-UA--CA |---C|A--G 2161 GU-GG-UGCA CG|G-UCG-- UCG-UCA|-G C-U---CG-U |GC-C(-GUG A)-GGUGU-U 2221 GG-G-(UUAA -GU)-CCCAC AA-------- CGAG-C--GC AACCC-CU-A |-CA--AUU- 2281 AG--UUAC-C AG-CAA---- ---------- ---------- ---G(---UA ---AAG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----UUG|G 2701 G-GA-CA-C- U-AAU-UG-G A-CA-G-CCG --CC(-GA-C GA)-GGC-G- -GAGG-A-AG 2761 G-AG-GGG-A UG-ACG--UC -A-GAUA-AG CGU-G-CN-C CUUAU-A-CU -CU--GGGC- 2821 G-ACA-CA-C GUG--CUACA AUGGG-G-AG -GA--CAAAG GGA-A-G-C- GA-AGC-C(G 2881 -UNA)GGUG- ---------- GA-GCGGA-U CCGGA-AAAA -CN-N-UCC- GUAAUAUGGA 2941 U-UGUAGGC- (UGAAAC-C- C)-GCCUACA -UGAAGC-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-AGG-(UC -AGCCAA)-A CUG-CGGUG- AAUA...... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS 2.2.2-FERV 4376 bp RNA RNA 09-JAN-1999 DEFINITION 2.2.2 FERVIDOBACTERIUM_GROUP. ACCESSION No information KEYWORDS No information. SOURCE 2.2.2 FERVIDOBACTERIUM_GROUP. ORGANISM 2.2.2 FERVIDOBACTERIUM_GROUP. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 0 a 0 c 0 g 0 t 4376 others ORIGIN 1 x~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~-- ------~~~~ 541 ~~~~~~---- -~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~---~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- 1681 -(~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- -------~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~----~~~ 1981 ~~~~-~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~--- --~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~------ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~---~~ ---~~~--~~ 2341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- 3181 ---------- ---------- ---------- ------~)~~ ~~~~~~~~~~ ~~~~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Fer.island 4376 bp RNA RNA 02-JUL-1998 DEFINITION Fervidobacterium islandicum str. H-21 DSM 5733. ACCESSION No information KEYWORDS No information. SOURCE Fervidobacterium islandicum str. H-21 DSM 5733. ORGANISM Fervidobacterium islandicum. REFERENCE 1 AUTHORS Huber,R., Woese,C.R., Langworthy,T.A., Kristjansson,J.K. and Stetter,K.O. TITLE Fervidobacterium islandicum sp. nov., a new extremely thermophilic eubacterium belonging to the "Thermotogales" JOURNAL Arch. Microbiol. 154, 105-111 (1990) STANDARD No information COMMENTS Organism information Culture collection: DSM 5733 Sequence information (bases 1 to 4376) Corresponding GenBank entry: M59176 DSM 5733 = ATCC 49647 (T) isolate_name= H-21 BASE COUNT 319 a 368 c 515 g 232 t 2942 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~NNAGCUUGG AGGGUU(U-G A)U-CCU|-G 61 GCUCAG-GGU -GAAC-GC-- UGGC-GGC-G -UGC-CU--A ACAC-AUGCA A-GUC-GAGC 121 G--------- ---------- ---------- ---------- ---------- ---------- 181 ---------- -----GUGCA GCUGGAG-GC (--UU----- ---------- ---------- 241 --------CG -)NC-CGAAG GCUGCAU--- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|------ AGCG-GCGA- 361 -A-CG-GG-U GCGU---AAC -GC-GUAGG- A-A--CGU-G C-CCNC---U -GGAG-G-CG 421 -GAU-AG-CC G--------- ------UG-- G(-GAAA-)C -UGCG-G--G UAAACCG-CN 481 AU-AGA---- ---------- ---------- ---------- ---CUC-(-- --------GG 541 GA-------- -)-GAG---- ---------- ----UAAA-- ---GGCC--- ---------- 601 --(------- ---GAAA--- ---)------ ---------| ---GGN--C- G--CCA---- 661 ----GGGG-- AGC---G-|G CCUGC----- -GU|----CC C--AUCA-G- GUA-G---UU 721 GG-UA-GG-( GU-AAC-GG) -C-CUACN-A A|-GCC-UA- CGA------- -----CG-GG 781 U-AG-C-CG| -G-UCU--(G -AGA)-GGAU ----GG-C-- CGG-C|C-AC -AAGGG-C-A 841 (CUGA-GA-C ACG)--GGCC -CUA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-GAUAUU G-GACAAU-- GG-GC-(GAA A)-GCC-UGA UCCA|-GCGA CGCC-GC-GU 961 G-G-AG-G-A C-GAA--G-C CC(--UU-CG --)GG-GUGU AAA--CUCC| UUUU-GU-CN 1021 --GG-GAA-- AA-A------ ---------( -----GGGC- ---------) ---------- 1081 ---------- ---------- U-GA-UGGU- A-CCC-G-AC G-AA--UAAG ---------C 1141 -CCCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGGN-C-- 1201 NAG-CGUUAC CC-GGAAUCA -CU-GGGC|G UAAA-GGGU- GCG-UAG-GC -G|-GC-CG- 1261 A-GU-GUG|U CUG---GCGU A-AAA-UU-C CA-CGG-C(- UC-A)A-CUG -UG-G-GUA- 1321 -UGCG-CUGG A-AAC-UACU C-GGCUU-GG GUG-----CG G-CA-GAGGC AGA-C|GGAA 1381 CU-GCUGGU- GUA-GGG(-G UGAAA)-UCC -GU-AGAU-A UC-AGCAGG- AACG-CCGG- 1441 -U-G-GA(-G AA-G)UCGG- -UCUGCUG-- ---------- ---------- ---------G 1501 GCC--GU-AA CCGACG-CUG AG-G------ -------CA- C-GAAA-GC- UA-GGG-GA- 1561 GC-GAA-CC- -GG(AUUA-G AUNC)-CCG- ----GGUA-G UC----CUA- G-CC-GU--A 1621 AAC-G-AUGC U--CA-CU-- -------A|G -GU-GN-GGG -GG-C----- ---------- 1681 -(-GG-AA)- ---------- ---------- ---------- --------GC -CUCCG-UGC 1741 UG--AA---- --GC-(NAA- ---C)G-CG- AUAA-GUGAG C|C|G-CCU- G-GGGAGUAC 1801 GCC-C---(G CAA)---G-G GU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-N-CC--G 1861 C-A--CA-AG CGGUGG-AGC G-U-GU-GGU -UUAAUU-GG -(AANCUA-A G)--CCAAGA 1921 A-CCUUA-CC AGG-GC-UUG ACA-UG|--- -------C-U ---GGUG--- GUA----CCG 1981 -AGC-C--(- GAAA-)-GGU -G-AGGGA-- CC-------- CUGCC----- --(GC----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------A A-)------- GGUAG----- ----GG---| AGC-CA-GCA |---C|A--G 2161 GU-GG-UGCA CG|G-UCG-- UCG-UCA|-G C-U---CG-U |GC-C(-GUG A)-GGUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-CU-G |-CC--CUU- 2281 AG--UUGC-C AG-CGG---- ---------- ---------- ----(---UU ---AGG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CCG|G 2701 G-CA-CU-C- U-AAG-GG-G A-CU-G-CCG --GC(-GN-N NA)-GCC-G- -GAGG-A-AG 2761 G-AG-GGG-A UG-ACG--UC -A-GAUA-CU CGU-G-CC-C CUUAU-G-UC -CU--GGGC- 2821 U-ACN-CN-C GCG--CUACN AUGGG-G-UG -GA--UAGCG GGA-A-G-C- GA-GGC-A(G 2881 -CGA)UGCU- ---------- GA-GCAAA-A CCCUG-AAAC -CA-C-CCC- CCAGUUCAGA 2941 U-UGUGGGC- (UGAAAC-C- C)-GCCCACA -UGAAGC-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGCCAC)-G CCG-CGGUG- AAUAC-GUU- CCC-GGN-CN UUGUA----C 3061 ACACCGCCC- NUC-AAG--- --CCA-CCCG A--GU-CGC- GG-GC-ACCC -GAA-G-ACG 3121 G-U-G----- --A-CCC--- ---------- ---------- -----(---- -UUAG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- GGG------C G-CC-GU-UG A-GGGN-GAA CGU-GG-UG- AGG-GGGG-C 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Fer.gndwns 4376 bp RNA RNA 02-JUL-1998 DEFINITION Fervidobacterium gondwanense str. AB39 ACM 5017 (T). ACCESSION No information KEYWORDS No information. SOURCE Fervidobacterium gondwanense str. AB39 ACM 5017 (T). ORGANISM Fervidobacterium gondwanense. REFERENCE 1 AUTHORS Andrews,K.T. and Patel,B.K.C. TITLE Fervidobacterium gondwanense sp. nov., a new thermophilic anaerobic bacterium isolated from nonvolcanically heated geothermal waters of the Great Artesian Basin of Australia JOURNAL Int. J. Syst. Bacteriol. 46, 265-269 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: Z49117|g1143453 isolate_name= AB39 BASE COUNT 338 a 375 c 509 g 252 t 2902 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......GGU GNAAC-GC-- UGGC-GGC-G -UGC-CU--A ACAC-AUGCA A-GUC-GAGC 121 G--------- ---------- ---------- ---------- ---------- ---------- 181 ---------- -----GUGCA GCUGGAA-GC (--UU----- ---------- ---------- 241 --------CG -)GC-GGAAG GCUGCAU--- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|------ AGCG-GCGG- 361 -A-GC-GG-U GCGU---AAC -AC-GUAGG- A-A--CGU-G C-CCCC---U -GGAG-G-CG 421 -GAU-AG-CC G--------- ------UG-- G(-GAAA-)C -UGCG-G--G UAAACCG-CC 481 GU-AGA---- ---------- ---------- ---------- ---CUC-(-- --------GG 541 GA-------- -)-GAG---- ---------- ----UAAA-- ---GGCC--- ---------- 601 --(------- ---GAAA--- ---)------ ---------| ---GGU---- G--CCA---- 661 ----GGGG-- AGC---G-|G CCUGC----- -GG|----CC C--AUCA-G- GUA-G---UU 721 GG-UA-GG-( GU-AAC-GG) -C-CUACC-A A|-GCC-GA- CGA------- -----CG-GG 781 U-AG-C-CG| -G-UCU--(G -AGA)-GGAU ----GG-C-- CGG-C|C-AC -AUGGG-C-A 841 (CUGA-GA-C ACG)--GGCC -CUA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-GAUUUU G-GACAAU-- GG-GC-(GAA A)-GCC-UGA UCCA|-GCGA CGCC-GC-GU 961 G-G-AG-G-A C-GAA--G-C CC(--UU-CG --)GG-GUGU AAA--CUCC| UUUU-CU-CA 1021 --GG-GAA-- AA-AAGC--- ---------( ---------- ---------) ---------- 1081 ---------- ---------- U-GA-UGGU- A-CCU-G-AG G-AA--UAAG ---------C 1141 -CCCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGGG-C-- 1201 GAG-CGUUAC CC-GGAAUUA -CU-GGGC|G UAAA-GGGU- GCG-UAG-GC -G|-GC-CG- 1261 U-CU-GUG|U CUG---GCGU U-AAA-AU-C CA-CGG-C(- UC-A)A-CUG -UG-G-GUA- 1321 -UGCG-CUGG A-AAC-UGCA C-GGCUU-GG UUG-----CA G-CA-GAGGC AGA-C|GGAA 1381 CU-GCUGUU- GUA-GGG(-U UGAAA)-UCC -GU-AGAU-A UC-AGCAGG- AACC-CCGG- 1441 -U-G-AA(-G AA-G)UCGG- -UCCUCCU-- ---------- ---------- ---------G 1501 GUC--UG-UA CCGACG-CUG AG-G------ -------CA- C-GAAA-GC- UA-GGG-GA- 1561 CC-AAA-CC- -GG(AUUA-G AUAC)-CCG- ----GGUA-G UC----CUA- C-CC-GU--A 1621 AAC-G-AUGC U--CA-CU-- -------U|G -GU-GU-GGG -GG-C----- ---------- 1681 -(-GA-A-)- ---------- ---------- ---------- --------GU -CUCCG-UGC 1741 UG--AA---- --GC-(UAA- ---C)G-CG- UUAA-GUGAC C|C|G-CCU- G-GGGAGUAU 1801 NCC-C---(G CAA)---G-G GU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CAGUGG-AGC G-U-GU-GGU -UUAAUU-GG -(AAGCUA-A G)--CCAAGA 1921 A-CCUUA-CC AGG-GC-UUG ACA-UG|--- -------C-U ---GGUG--- GUA----CUG 1981 -AGC-C--(- GAAA-)-GGU -G-AGGGA-- CC-------- UUACC----- --(GC----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------A A-)------- GGUAA----- ----GG---| AGC-CA-GCA |---C|A--G 2161 GU-GG-UGCA CG|G-UCG-- UCG-UCA|-G C-U---CG-U |GC-C(-GUG A)-GGUCU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-CU-G |-CU--CUU- 2281 AG--UUGC-C AG-CAC---- ---------- ---------- ----(---GA ---AAG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-CA-CU-C- U-AAG-AG-G A-CC-G-CCG --GC(-GA-C GA)-GCC-G- -GAGG-A-AG 2761 G-AG-GGG-A UG-ACG--UC -A-GUAA-CU CGU-G-CC-C CUUAU-G-CU -CU--GGGC- 2821 G-ACA-CA-C GCG--CUACA AUGGG-A-UG -GA--CAGCG GGA-G-G-C- GA-GGC-A(G 2881 -CGA)UGCU- ---------- GA-GCAAA-A CCCAC-AAAC -CA-U-CCC- CCAGUUCAGA 2941 U-UGUGGGC- (UGAAAC-C- C)-GCCCACA -UGAAGC-CG -GAAU-UGC- -UAGUA-AUC 3001 GC-GGU-(UC -AGCCAC)-G CCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-AAG--- --CCA-CCCG A--GU-UGN- GG-GN-ACCC -GAA-G-ACG 3121 G-U-G----- --A-CCC--- ---------- ---------- -----(---- -UUAG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- GGG------C G-CC-GU-UG A-GGGU-GAA CGU-GG-UG- AGG-GGGG-C 3301 U---AAGUC- GUAA-CAAGG UAGGU-GUAC C(GGA-A)GG UGCGGC--UG GAUCACCUCC 3361 U...|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Fer.nodosm 4376 bp RNA RNA 02-JUL-1998 DEFINITION Fervidobacterium nodosum str. Rt 17-B1 ATCC 35602 (T). ACCESSION No information KEYWORDS No information. SOURCE Fervidobacterium nodosum str. Rt 17-B1 ATCC 35602 (T). ORGANISM Fervidobacterium nodosum. REFERENCE 1 AUTHORS Huber,R., Woese,C.R., Langworthy,T.A., Kristjansson,J.K. and Stetter,K.O. TITLE Fervidobacterium islandicum sp. nov., a new extremely thermophilic eubacterium belonging to the "Thermotogales" JOURNAL Arch. Microbiol. 154, 105-111 (1990) STANDARD No information COMMENTS Organism information Culture collection: ATCC 35602 (T) Sequence information (bases 1 to 4376) Corresponding GenBank entry: M59177 isolate_name= Rt 17-B1 BASE COUNT 326 a 353 c 502 g 242 t 2953 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~NUAGCUUGG AGGGUU(U-G A)U-CCU|-G 61 GCUCAG-GGU -GAAC-GC-- UGGC-GGC-G -UGC-CU--A ACAC-AUGCA A-GUC-GAGC 121 G--------- ---------- ---------- ---------- ---------- ---------- 181 ---------- -----GUGCA GCUGGAG-AC (--UU----- ---------- ---------- 241 --------CG -)GU-UGAAG GCUGCAU--- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|------ AGCG-GCGG- 361 -A-CG-GG-U GCGU---AAC -AC-GUAGG- A-A--CGU-G C-CCCC---U -GGAG-G-CG 421 -GAU-AG-CU A--------- ------CG-- G(-GAAA-)C -UGUA-G--G UAAUCCN-NN 481 AU-AGA---- ---------- ---------- ---------- ---CUC-(-- --------GG 541 GA-------- -)-GAG---- ---------- ----UAAAG- ---GCC---- ---------- 601 --(------- ---GGAA--- ---)------ ---------| ----GG--C- G--CCA---- 661 ----GGGN-- AGC---N-|G CCNGC----- -GG|----CC C--AUCA-G- GUA-G---UU 721 GG-UA-GG-( GU-AAC-GG) -C-CUACN-N A|-GCC-GA- CGA------- -----CG-GG 781 U-AG-C-CG| -A-UCU--(G -AGA)-GGAU ----GG-U-- CGG-C|C-AC -AAGGG-C-A 841 (CUGA-GA-C ACG)--GGCC -NNN-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-GAUAUU G-GACAAU-- GG-GC-(GAA A)-GCC-UNA UCCA|-GCGA CGCC-GC-GU 961 G-G-AG-G-A C-GAA--G-C CC(--UU-CG --)GG-GUGU AAA--CUCC| NUUU-GC-UA 1021 --GG-GAA-- AA-A------ ---------( -----GUAC- ---------) ---------- 1081 ---------- ---------- U-GA-UGGU- A-CCU-A-GC G-AA--UAAG ---------C 1141 -CCCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGGG-C-- 1201 NAG-CGUUAC CC-GGAAUCA -CU-GGGC|G UAAA-GGGU- GCG-UAG-GU -G|-GC-CC- 1261 U-GU-GNG|U CUG---GCGU U-AAA-UA-C CA-CGG-C(- UC-A)A-CUG -UG-G-GAU- 1321 -UGCG-CUGG A-AAC-UGCA G-GGCUU-GG GUG-----CG G-CA-GAGGC AGA-U|GGAA 1381 CU-GCUGGU- GUA-GGG(-G UNAAA)-UCC -GU-AGAU-A UC-AGCAGN- AACG-CCGG- 1441 -U-G-GA(-G AA-G)UCGG- -UCUGCUN-- ---------- ---------- ---------G 1501 GCC--GU-NA CCGACG-CUG AG-G------ -------CA- C-NAAA-GC- UA-GGG-GA- 1561 GC-GAA-CC- -GG(AUUA-G AUAC)-CCG- ----GGUN-G UC----CUA- G-CC-GU--A 1621 AAC-G-AUGC U--CA-CU-- -------A|G -GU-GU-GGG -GC-C----- ---------- 1681 -(-GG-AA)- ---------- ---------- ---------- --------GG -CUCCG-UGC 1741 UG--AA---- --GC-(UAA- ---C)G-CG- AUAA-GUGAG C|N|G-CCU- G-GGGAGUAU 1801 GCC-C---(G CAA)---G-G GU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CN--G 1861 C-A--CA-AG CGGUGG-AGC G-U-GU-GGU -UUAAUU-GG -(AAGCUA-A G)--CCAAGA 1921 A-CCUUA-CC AGG-GC-UUG ACA-UG|--- -------C-U ---GGUG--- GUA----CCG 1981 -AGC-C--(- GAAA-)-GGU -G-AGGGA-- CG-------- CUACC----- --(GU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------A A-)------- GGUAG----- ----UG---| AGC-CA-GCN |---C|A--G 2161 GU-GG-UGCA CG|G-UCG-- UCG-UCA|-G C-U---CG-U |GC-C(-GUG A)-GGUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-CU-G |-CC--CUU- 2281 AG--UUGC-C AG-CAC---- ---------- ---------- ----(---GA ---AAG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-CA-CU-C- U-AAG-GN-N A-CU-G-CCG --GC(-GA-C GA)-GCC-G- -GAGG-A-AG 2761 G-AG-GGN-N UG-ACG--UC -A-GAUA-CU CGU-G-CN-C CUUAU-G-UC -CU--GGGC- 2821 G-ACA-CA-C GCG--CUACA AUGGG-G-CG -GA--CAGCG GGA-A-G-C- GA-GCC-A(G 2881 -UGA)UGGU- ---------- GA-GCAAA-A CCCUC-NAAC -CG-U-CCC- CCAGUUCAGA 2941 U-UGUGGGC- (UGAAAC-C- C)-GCCCACA -UGAAGC-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGCCAC)-G CCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-AAG--- --CCA-CCCG A--GU-UGC- GG-GC-ACCC -GAA-G-ACG 3121 G-U-A----- --A-UGC--- ---------- ---------- -----(---- -UUAG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- GCA------U A-CC-GU-UG A-GGGN-NAA CGU-GG-UG- AGG-GGG... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS 2.2.3-THER 4376 bp RNA RNA 09-JAN-1999 DEFINITION 2.2.3 THERMOTOGA_GROUP. ACCESSION No information KEYWORDS No information. SOURCE 2.2.3 THERMOTOGA_GROUP. ORGANISM 2.2.3 THERMOTOGA_GROUP. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 0 a 0 c 0 g 0 t 4376 others ORIGIN 1 x~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~-- ------~~~~ 541 ~~~~~~---- -~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~---~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- 1681 -(~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- -------~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~----~~~ 1981 ~~~~-~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~--- --~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~------ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~---~~ ---~~~--~~ 2341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- 3181 ---------- ---------- ---------- ------~)~~ ~~~~~~~~~~ ~~~~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Tsi.africa 4376 bp RNA RNA 02-JUL-1998 DEFINITION Thermosipho africanus str. OB7 DSM 5309. ACCESSION No information KEYWORDS No information. SOURCE Thermosipho africanus str. OB7 DSM 5309. ORGANISM Thermosipho africanus. REFERENCE 1 AUTHORS Stetter,K.O. Huber,R.H., Woese,C.R., Langworthy,T.A., Fricke,H. and TITLE thermophilic eubacteria within the Thermotogales Thermosipho africanus gen. nov., represents a new genus of JOURNAL Syst. Appl. Microbiol. 12, 32-37 (1989) STANDARD No information COMMENTS Organism information Culture collection: DSM 5309 Sequence information (bases 1 to 4376) Corresponding GenBank entry: M83140 isolate_name= OB7 BASE COUNT 318 a 341 c 482 g 236 t 2999 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~NAUUCAUGG AGGGUU(U-G A)U-CCU|-G 61 GCUCAG-GGU -GAAC-GC-- UGGC-GGC-G -UGC-CU--U ACAC-AUGCA A-GUC-GAGC 121 G--------A AG-------- ---------- ---------- ---------- ---------- 181 ---------- --CUGCUGG- UGGAAUC-CU (--UU----- ---------- ---------- 241 --------CG -)GG-GAGGA ANGCCNGUAG ---------- ---------- ---------- 301 ---------- ---------- ---------- --------A- CUN|------ AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAC -GC-GUAGG- UGA--CCU-A C-CCCU---C -AGAG-G-GG 421 -GAU-AA-CU G--------- ------GG-- G(-GAAA-)C -CUCA-G--C UAAUACC-CN 481 AU-ACG---- ---------- -------U-U CC-U--A-C- ---CUA-(-- --------UA 541 AG-------- -)-NAG---- GU-AG----G AA--GAAA-- ---GGGA--- ---------- 601 --(------- -GCAAUAG-- ---)------ ---------| ---CUC--U- G--CUG---- 661 ----AGNN-- NGG---G-|G CCUGC----- -GA|----CC C--AUCA-G- GUA-G---UU 721 GG-UG-AG-( GU-AAC-GG) -C-UCACN-A A|-GCC-UA- CGA------- -----CG-GG 781 U-AG-C-CG| -G-UCU--(G -AGA)-GGAU ----GG-C-- CGN-C|N-AC -AAGGG-C-A 841 (CUGA-GA-C ACG)--GGCC -NNA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-GAUUUU G-GACAAU-- GG-GC-(GAA A)-GCC-UNA UCCA|-GCGA CGCC-GN-GU 961 G-C-GG-G-A C-GAA--G-C CC(--UU-CG --)GG-GUGU AAA--CCGC| UGUG-GU-GG 1021 --GA-GAC-- GA-AUAA-GG --UGA-GGA( G----UGGAA -----A---) GCCU-CA-CU 1081 ---------- -------G-A U-GA-CGGU- A-UCC-C-AC U-AG--AAAG ---------C 1141 -CCCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGGG-C-- 1201 NAG-CGUUAC CC-GGAUUUA -CU-GGGC|G UAAA-GGGG- GCG-UAG-GC -G|-GC-CG- 1261 U-GA-AAG|U CCG---GUGU G-AAA-AC-U CA-CGG-C(- UC-A)A-CCG -UG-G-GAC- 1321 -UGCG-CUGG A-AAC-UACA C-GGCUU-GA GGA-----CG G-UA-GAGGG AGA-C|GGAA 1381 CU-GCUGGU- GUA-GGG(-G UGAAA)-UCC -GU-AGAU-A UC-AGCAGG- AACG-CCGG- 1441 -U-G-GA(-G AA-G)UCGG- -UCUCCUG-- ---------- ---------- ---------G 1501 GCC--GU-NC CUGACG-CUG AG-G------ -------CC- C-NAAA-GC- UA-GGG-GA- 1561 GC-AAA-CC- -GG(AUUA-G AUAC)-CCG- ----GGUA-G UC----CUA- G-CC-GU--A 1621 AAC-G-AUGC C--CN-CU-- -------A|G -GU-GU-GGG -GG-AG---- ---------- 1681 -(-UA-A-)- ---------- ---------- ---------- -------UUC -CUCCG-UGC 1741 UG--AA---- --GC-(UAA- ---C)G-CG- AUAA-GUGGG C|C|G-CCU- G-GGGAGUAU 1801 GCC-C---(G CAA)---G-G GU-GAAACUC -AAA-GGAAU UG-ACGGG-A -C-C-CN--G 1861 C-A--CA-AG CGGUGG-AGC G-U-GU-GGU -UUAAUU-GG -(ACGCUA-A G)--CCAAGA 1921 A-CCUUA-CC AGG-GC-UUG ACA-UG|--- -------C-U ---GGUG--- GUA----CUG 1981 -NCN-C--(- GAAA-)-GGG -G-AGGGA-- CC-------U GUGGC----- --(GU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------U A-)------- GUCACG---- ----GG---| AGC-CA-GCA |---C|A--G 2161 GU-GG-UGCA CG|G-UCG-- UCG-UCA|-G C-U---CG-U |GC-C(-GUG A)-GGUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-CU-G |-CC--CUU- 2281 AG--UUGC-C AG-CGG---- ---------- ---------- ----(---UU ---CGG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CCG|G 2701 G-CA-CU-C- U-AAG-GG-N A-CU-G-CCG --GC(-GA-C GA)-GCC-G- -GAGG-A-AG 2761 G-AG-GGG-A UG-ACG--UC -A-GAUA-CU CGU-G-CN-C CUUAU-G-CC -CU--NGGC- 2821 G-ACA-CA-C GCG--CUACA AUGGG-U-GG -GA--CAGCG GGA-A-G-C- GA-GCC-A(G 2881 -CGA)UGGU- ---------- GA-GCGAA-G CCCUU-AAAC -CC-A-CCC- UCAGUUCGGA 2941 U-UGCAGGC- (UGAAAC-C- C)-GCCUGCA -UGAAGC-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGCCAC)-G CCG-CG.... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Tt.thermar 4376 bp RNA RNA 02-JUL-1998 DEFINITION Thermotoga thermarum str. LA3. ACCESSION No information KEYWORDS No information. SOURCE Thermotoga thermarum str. LA3. ORGANISM Thermotoga thermarum. REFERENCE 1 AUTHORS Woese,C.R. JOURNAL Unpublished (1990) STANDARD No information COMMENTS isolate_name= LA3 BASE COUNT 311 a 380 c 506 g 235 t 2944 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~NUUUGUGG AGGGUU(U-G A)U-CCU|-G 61 GCUCAG-GGU -GAAC-GC-- UGGC-GGC-G -UGC-CU--A ACAC-AUGCA A-GUC-GAGC 121 G--G------ ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ----UAC-CC (--GC----- ---------- ---------- 241 --------AA -)GG-GUA-- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-CN--- AGCG-GCGA- 361 -A-CG-GG-U GAGU---AAC -GC-GUGGG- UAA--CCU-A C-CCCU---C -AGAN-G-GG 421 -GAU-AA-CC A--------- ------GG-- G(-GAAA-)C -CCUN-G--C UAAUACC-CN 481 AU-ACG---- ---------- -------A-U -C-A--G-U- ---GAC-(-- --------GA 541 AG-------- -)-GUC---- AC-UG----G AU--GAAA-- ---GG----- ---------- 601 --(------- --NAACUG-- ---)------ ---------| ---CCC--N- N--CUG---- 661 ----AGNN-- NUG---G-|G CCCNC----- -GU|----CC C--AUNA-G- GUA-G---UU 721 GG-UG-GG-( GU-AAC-GG) -C-CCACN-A A|-GCC-NA- CGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGU ----GG-U-- CGG-C|N-AC -AGGGG-C-A 841 (CUGA-GA-C ACG)--GGCC -NNN-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUCUU G-GACAAU-- GG-GC-(GAA A)-GCC-UNA UCCA|-GCGA CGCC-GC-GU 961 G-G-GG-G-A U-GAA--N-N CN(--NU-CG --)GG-GUGU AAA--CCCC| UGUU-GC-GA 1021 --GG-GAC-- GA-AUAA-GG --UGC-GGA( G----UGGAA -----U---) GCCG-CA-CC 1081 ---------- -------G-A U-GA-CGGU- A-CCU-C-GC G-AG--AAAG ---------C 1141 -CCCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGGG-C-- 1201 NAG-CGUUAC CC-GGAUUUA -CU-GGGC|G UAAA-GGGU- GCG-UAG-GC -G|-GC-CU- 1261 G-GU-AAG|U CGG---GUGU G-AAA-UC-C NA-CGG-C(- UC-A)A-CCG -UG-G-NAU- 1321 -UGCG-CCCU A-AAC-UGCC N-GGCUU-GG GGA-----CG G-UA-GAGGG AGA-C|GGAA 1381 CU-GCCGGU- GUA-GGG(-G UGAAA)-UCC -GU-AGAU-A UC-GGCAGG- AACG-CCGG- 1441 -U-G-GG(-G AA-G)CCGG- -UCUCCUN-- ---------- ---------- ---------G 1501 GCC--GC-UC CCGACG-CUG AG-G------ -------CA- C-GAAA-GC- UA-GGG-GA- 1561 GC-AAA-CC- -GG(AUUA-G AUAC)-CCG- ----GGUA-G UC----CUA- G-CC-GU--A 1621 AAC-G-AUGC C--CA-CU-- -------A|G -GU-GU-GGG -GG-G----- ---------- 1681 -(AUA-AU)- ---------- ---------- ---------- --------CC -CUCCG-UGC 1741 UG--UA---- --GC-(UAA- ---C)G-CG- UUAA-GUGGG N|U|G-CCU- G-GGGAGUAC 1801 GCC-C---(G CAA)---G-G GU-GAAACUC -AAA-GGAAU UG-GCGGG-A -C-C-UC--G 1861 N-A--CA-AG CGGUGG-AGC G-C-GU-NGU -UUAAUU-GG -(AUGCUG-A G)--CCAAGA 1921 A-CCUUA-CC AGG-NC-UUG ACA-UG|--- -------C-G ---GGUG--- GUA----CCG 1981 -ACN-C--(- GAAA-)-GGG -A-AGGGA-- CC-------C CUUCN----- --(NU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------U U-)------- GGAAGG---- ----GN---| AGC-CN-NNN |---C|A--G 2161 GU-GG-UGCA CG|G-CCG-- UCG-UCA|-G C-U---CG-U |GC-C(-GUG A)-GGUGU-U 2221 GG-G-(UUAA -GU)-CCCNN AA-------- CGAG-C--GC AACCC-CU-G |-CC--CCU- 2281 AG--UUGC-C AG-CGG---- ---------- ---------- ----(---UU ---CGG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CCG|G 2701 G-CN-CU-C- U-AGG-GN-N A-CU-G-C-G --GC(-GA-C GA)-GCC-G- -GAGG-A-AG 2761 G-AG-GGG-N CG-ACG--UC -A-GGUA-CU CGU-G-CN-C CUUAU-G-CC -CU--NGGC- 2821 U-ACA-CA-C GCG--CUACA AUGGG-U-GG -UA--CAGUG GGU-U-G-C- GA-UCC-C(G 2881 -CGA)GGGG- ---------- GA-GCUAA-U CCCU--NAAA -CC-A-CCC- CCAGUUCGGA 2941 U-CGCAGGC- (UGCAAC-C- C)-GCCUGCG -UGAAGC-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGCCAC)-G CCG-CGGUG- AAUAC-GUU- CC........ UUGCA----C 3061 ACACCGCCN- GUC-AAG--- --CCA-CCCG A--GC-UGG- GG-GC-ACCU -GAA-GACGC 3121 C-GAC-C-CC -AA-CCC--- ---------- ---------- -----(---- -GAAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- GGGAGG-G-G N-GN-NGUUG A-AGGU-NAA CCU-GG-UG- AGG-GGGG-C 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Tt.subtrrn 4376 bp RNA RNA 02-JUL-1998 DEFINITION Thermotoga subterranea str. SL1 DSM 9912. ACCESSION No information KEYWORDS No information. SOURCE Thermotoga subterranea str. SL1 DSM 9912. ORGANISM Thermotoga subterranea. REFERENCE 1 AUTHORS Pace,N., Glenat,P. and Prieur,D. Jeanthon,C., Reysenbach,A., L'Haridon,S., Gambacorta,A., TITLE bacterium isolated from a continental reservoir Thermotoga subterranea sp. nov., a new thermophilic JOURNAL Arch. Microbiol. 164, 91-97 (1995) STANDARD No information COMMENTS Organism information Culture collection: DSM 9912 Sequence information (bases 1 to 4376) Corresponding GenBank entry: U22664|g915213 isolate_name= SL1 BASE COUNT 335 a 387 c 510 g 249 t 2895 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 ....AG-GGU -GAAC-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GCGC 121 G--GG----- -----GA-AA ---------- ---------- ---------- ---------- 181 ---------- ---------- -----CC-CC (--UU----- ---------- ---------- 241 --------CG -)GG-GGG-- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---AGUA--- ---|-CC--- AGCG-GCGC- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- UAA--CCU-A C-CCCU---C -AGCG-G-GG 421 -GAU-AA-CC G--------- ------GG-- G(-GAAA-)C -UCCG-G--C UAAUACC-CC 481 AU-AUU---- ---------- -------A-U CC-G--G-U- ---GAC-(-- --------GA 541 CA-------- -)-GUU---- GC-UG----G AU--GAAA-- ---GGAGC-- ---------- 601 --(------- ---GUUU--- ---)------ ---------| --GCUU--C- G--UUG---- 661 ----AGGG-- AUG---G-|G CCCGC----- -GG|----CC C--AUCA-G- GUA-G---UU 721 GG-UG-AG-( GU-AAU-GG) -C-UCACC-A A|-GCC-UA- CGA------- -----CG-GG 781 U-AG-C-CG| -A-CCU--(G -AGA)-GGGU ----GA-C-- CGG-C|C-AC -AAGGG-C-A 841 (CUGA-GA-C ACG)--GGCC -CUA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUUUU G-GACAAU-- GG-GC-(GAA A)-GCC-UGA UCCA|-GCGA CGCC-GC-GU 961 G-A-GG-G-A C-GAA--G-C CC(--UU-CG --)GG-GUGU AAA--CCUC| UGUU-GU-GA 1021 --GG-GAC-- GA-AUAA-GA --UCU-GGA( G----GAAA- -----U---) GCCA-GA-UC 1081 ---------- -------G-A U-GA-CGGU- A-CCU-C-AC G-AG--AAAG ---------C 1141 -CCCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGGG-C-- 1201 AAG-CGUUAC CC-GGAUUCA -CU-GGGC|G UAAA-GGGG- GCG-CAG-GC -G|-AU-CC- 1261 A-GU-AUG|U CGG---GUGU G-AAA-UC-C CA-CAG-C(- UC-A)A-CUG -UG-G-AAU- 1321 -CGCA-CCCG A-AAC-UACU G-GGCUU-GG GGC-----UG G-UA-GAGGG AGA-C|GGAA 1381 CU-GCUGGU- GUA-GGG(-G UGAAA)-UCC -GU-AGAU-A UC-AGCAGG- AACG-CCGG- 1441 -U-G-GG(-G AA-G)CCGG- -UCUCCUG-- ---------- ---------- ---------G 1501 GCC--AA-GC CCGACG-CUG AG-G------ -------CC- C-GAAA-GC- UA-GGG-GA- 1561 GC-AAA-CC- -GG(AUUA-G AUAC)-CCG- ----GGUA-G UC----CUA- G-CC-GU--A 1621 AAC-G-AUGC C--CA-CU-- -------A|G -GU-GU-GGG -GG-AG---- ---------- 1681 -(-UC-A-)- ---------- ---------- ---------- -------UUC -CUCCG-UGC 1741 UG--UA---- --GC-(UAA- ---C)G-CG- UUAA-GUGGG C|C|G-CCU- G-GGGAGUAC 1801 GCC-C---(G CAA)---G-G GU-GAAACUC -AAA-GGAAU UG-GCGGG-G -A-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC G-U-GU-GGU -UUAAUU-GG -(AUGCUA-A G)--CCAAGA 1921 A-CCUUA-CC AGG-GC-UUG ACA-UG|--- -------C-A ---GGUG--- GUA----CCA 1981 -ACC-C--(- GAAA-)-GGG -GAAGGGA-- CC-------C UUUCC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------U U-)------- GGAAAG---- ----GG---| AGC-CU-GCA |---C|A--G 2161 GU-GG-UGCA CG|G-CCG-- UCG-UCA|-G C-U---CG-U |GC-C(-GUG A)-GGUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-CU-G |-CC--CUU- 2281 -G--UUGC-C AG-CGG---- ---------- ---------- ----(---UU ---CGG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CCG|G 2701 G-CA-CU-C- U-AAG-GG-G A-CC-G-CCG --GC(-GA-C GA)-GCC-G- -GAGG-A-AG 2761 G-AG-GGG-A CG-ACG--UC -A-GGUA-CU CGU-G-CC-C UUUAU-G-CC -CU--GGGC- 2821 U-ACA-CA-C GCG--CUACA AUGGG-U-GG -UA--CAGUG GGU-C-G-C- GA-CCU-C(G 2881 -CGA)GAGG- ---------- GA-GCCAA-U CCCC--AAAA -CC-A-UCC- UCAGUUCAGA 2941 U-CGCAGGC- (UGCAAC-C- C)-GCCUGCG -UGAAGC-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGCCUA)-G CCG-CGGUG- AAUAC-GUU- CCC-GGG-GU UUGCA----C 3061 ACACCGCCC- GUC-AAG--- --CCA-CCCG A--GU-CGG- GG-GC-ACCU -GAA-GACGC 3121 C-UAU-C-CU -AA-CCC--- ---------- ---------- -----(---- -GAAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- GGGAGG-G-A A-GG-UGGUG A-AGGU-GAA UCU-GG-CG- AGG-GGGG-C 3301 U---AA.... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Tt.elfii 4376 bp RNA RNA 02-JUL-1998 DEFINITION Thermotoga elfii str. SERB 6459 DSM 9442. ACCESSION No information KEYWORDS No information. SOURCE Thermotoga elfii str. SERB 6459 DSM 9442. ORGANISM Thermotoga elfii. REFERENCE 1 AUTHORS Egan,A., Garcia,J.-L. and Ollivier,B. Ravot,G., Magot,M., Fardeau,M.-L., Patel,B.K.C., Prensier,G., TITLE from an African oil-producing well Thermotoga elfii sp. nov., a novel thermophilic bacterium JOURNAL Int. J. Syst. Bacteriol. 45, 308-314 (1995) STANDARD No information COMMENTS Organism information Culture collection: DSM 9442 Sequence information (bases 1 to 4376) Corresponding GenBank entry: X80790|g695761 isolate_name= SERB 6459 BASE COUNT 346 a 394 c 510 g 266 t 2860 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......C-- UGGU-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GCGC 121 G--GG----- -----GA-AA ---------- ---------- ---------- ---------- 181 ---------- ---------- ----ACC-CC (--UU----- ---------- ---------- 241 --------CG -)GG-GGG-- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---AGUA--- ---|-CC--- AGNG-GCGC- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- UAA--CCU-A C-CCCU---C -AGUG-G-GG 421 -GAU-AA-CC G--------- ------GG-- G(-GAAA-)C -UCCG-G--U UAAUACC-CC 481 AU-AUU---- ---------- -------A-U CC-G--G-U- ---GAC-(-- --------GA 541 CA-------- -)-GUU---- GU-UG----G AU--GAAA-- ---GGAGU-- ---------- 601 --(------- ---GUUU--- ---)------ ---------| --GCUU--C- G--CUG---- 661 ----AGGG-- AUG---G-|G CCCGC----- -GG|----CC C--AUCA-G- GUA-G---UU 721 GG-UG-AG-( GU-AAU-GG) -C-UCACC-A A|-GCC-UA- CGA------- -----CG-GG 781 U-AG-C-CG| -A-CCU--(G -AGA)-GGGU ----GA-C-- CGG-C|C-AC -AAGGG-C-A 841 (CUGA-GA-C ACG)--GACC -CUA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUUUU G-GACAAU-- GG-GC-(GAA A)-GCC-UGA UCCA|-GCGA CGCC-GC-GU 961 G-A-GG-G-A C-GAA--G-C CC(--UU-CG --)GG-GUGU AAA--CCUC| UGUU-GU-GA 1021 --GG-GAC-- GA-AUAA-GA --UCU-GGA( G----GAAA- -----U---) GCCA-GA-UC 1081 ---------- -------G-A U-GA-CGGU- A-CCU-C-AC G-AG--AAAG ---------C 1141 -CCCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGGG-C-- 1201 GAG-CGUUAC CC-GGAUUCA -CU-GGGC|G UAAA-GGGG- GCG-CAG-GC -G|-AU-CC- 1261 A-GU-AUG|U CGG---GUGU G-AAA-UC-C CA-CAG-C(- UC-A)A-CUG -UG-G-AAU- 1321 -UGCG-CCCG A-AAC-UACU G-GGUUU-GG GGC-----UG G-UA-GAGGG AGA-C|GGAA 1381 CU-GCUGGU- GUA-GGG(-G UGAAA)-UCC -GU-AGAU-A UC-AGCAGG- AACG-CCGG- 1441 -U-G-GG(-G AA-G)CCGG- -UCUCCUG-- ---------- ---------- ---------G 1501 GCC--AA-GC CCGACG-CUG AG-G------ -------CC- C-GAAA-GC- UA-GGG-GA- 1561 GC-AAA-CC- -GG(AUUA-G AUAC)-CCG- ----GGUA-G UC----CUA- G-CC-GU--A 1621 AAC-G-AUGC C--CA-CU-- -------A|G -GU-GU-GGG -GG-AG---- ---------- 1681 -(-UC-A-)- ---------- ---------- ---------- -------AUC -CUCCG-UUC 1741 UG--UA---- --GC-(UAA- ---C)G-CG- UUAA-GUUGG C|C|G-CCU- G-GGGAGUAC 1801 GCC-C---(G CAA)---G-G GU-GAAACUC -AAA-GGAAU UG-GCGGG-A -C-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC G-U-GU-GGU -UUAAUU-GG -(AUGCUA-A G)--CCAAGA 1921 A-CCUUA-CC AGG-GC-UUG ACA-UG|--- -------C-A ---GGUG--- GUA----CCA 1981 -ACC-C--(- GAAA-)-GGG -A-AGGGA-- CC-------C UUUCC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------U U-)------- GGAAAG---- ----GG---| AGC-CU-GCA |---C|A--G 2161 GU-GG-UGCA CG|G-CCG-- UCG-UCA|-G C-U---CG-U |GC-C(-GUG A)-GGUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-CU-G |-CC--CUU- 2281 AG--UUGC-C AG-CGG---- ---------- ---------- ----(---UU ---CGG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CCG|G 2701 G-CA-CU-C- U-AAG-GG-G A-CC-G-CCG --CC(-GA-C GA)-NCC-G- -GAGG-A-AG 2761 G-AG-GGG-A CG-ACG--UC -A-GGUA-CU CGU-G-CC-C UUUAU-G-CC -CU--GGGC- 2821 U-ACA-CA-C GCG--CUACA AUGGG-U-GG -UA--CAGUG GGU-C-G-C- GA-CCU-C(G 2881 -CGA)GAGG- ---------- GA-GCCAA-U CCCC--AAAA -CC-A-UCC- UCAGUUCAGA 2941 U-CGCAGGC- (UGCAAC-C- C)-GCCUGCG -UGAAAC-CG -GAAU-CGC- -UAAUA-AUC 3001 GC-GGA-(UC -AACCAU)-G CCG-CGGUG- AUUAC-GUC- CCC-GGG-GU UUGCA----C 3061 ACACCGCCC- GUC-AAA--- --CCA-CCCG A--GU-CGG- GG-GC-ACCU -GAA-GACGC 3121 C-UAU-C-CU -AA-CCC--- ---------- ---------- -----(---- -GAAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- GGGAGG-N-G A-GG-UGUUG A-AGGU-GAA UCU-GG-CG- AGG-GGGG-C 3301 U---AAGUC- GUAA-CAAGG UAGCC-GUAC U(GGA-A)GG UGCGGC--UG GAUCACCUCC 3361 U...|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Tt.maritim 4376 bp RNA RNA 02-JUL-1998 DEFINITION Thermotoga maritima str. MSB8 DSM 3109. ACCESSION No information KEYWORDS No information. SOURCE Thermotoga maritima str. MSB8 DSM 3109. ORGANISM Thermotoga maritima. REFERENCE 1 AUTHORS Achenbach-Richter,L., Gupta,R., Stetter,K.O. and Woese,C.R. TITLE Were the original eubacteria thermophiles? JOURNAL Syst. Appl. Microbiol. 9, 34-39 (1987) STANDARD No information COMMENTS Organism information Culture collection: DSM 3109 Sequence information (bases 1 to 4376) Corresponding GenBank entry: M21774 isolate_name= MSB8 BASE COUNT 327 a 430 c 564 g 241 t 2814 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~UAUAUGG AGGGUU(U-G A)U-CCU|-G 61 GCUCAG-GGU -GAAC-GC-- UGGC-GGC-G -UGC-CU--A ACAC-AUGCA A-GUC-GAGC 121 G--GGG---- -----GA-AA ---------- ---------- ---------- ---------- 181 ---------- ---------- ----CUC-CC (--UU----- ---------- ---------- 241 --------CG -)GG-GAG-- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --GAGUA--- ---|CCC--- AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- UAA--CCU-G C-CCUC---C -GGAG-G-GG 421 -GAU-AA-CC A--------- ------GG-- G(-GAAA-)C -CCUG-G--C UAAUACC-CC 481 AU-ACG---- ---------- -------C-U CC-A--U-C- ---AAC-(-- --------GC 541 AA-------- -)-GUU---- GG-UG----G AG--GAAA-- ---GGGGC-- ---------- 601 --(------- ---GUUU--- ---)------ ---------| --GCCC--C- G--CCG---- 661 ----GAGG-- AGG---G-|G CCCGC----- -GG|----CC C--AUCA-G- GUA-G---UU 721 GG-UG-GG-( GU-AAC-GG) -C-CCACC-A A|-GCC-GA- CGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGU ----GG-U-- CGG-C|C-AC -AGGGG-C-A 841 (CUGA-GA-C ACG)--GGCC -CCA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUCUU G-GACAAU-- GG-GG-(GAA A)-CCC-UGA UCCA|-GCGA CGCC-GC-GU 961 G-C-GG-G-A C-GAA--G-C CC(--UU-CG --)GG-GUGU AAA--CCGC| UGUG-GC-GG 1021 --GG-GAA-- GA-AUAA-GG --UAG-GGA( G----GAAA- -----U---) GCCC-UA-CC 1081 ---------- -------G-A U-GA-CGGU- A-CCC-C-GC U-AG--AAAG ---------C 1141 -CCCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGGG-C-- 1201 AAG-CGUUAC CC-GGAUUUA -CU-GGGC|G UAAA-GGGG- GCG-UAG-GC -G|-GC-CU- 1261 G-GU-GUG|U CGG---AUGU G-AAA-UC-C CA-CGG-C(- UC-A)A-CCG -UG-G-GGC- 1321 -UGCA-UCCG A-AAC-UACC A-GGCUU-GG GGG-----CG G-UA-GAGGG AGA-C|GGAA 1381 CU-GCCGGU- GUA-GGG(-G UGAAA)-UCC -GU-AGAU-A UC-GGCAGG- AACG-CCGG- 1441 -U-G-GG(-G AA-G)CCGG- -UCUCCUG-- ---------- ---------- ---------G 1501 GCC--GA-CC CCGACG-CUG AG-G------ -------CC- C-GAAA-GC- CA-GGG-GA- 1561 GC-AAA-CC- -GG(AUUA-G AUAC)-CCG- ----GGUA-G UC----CUG- G-CU-GU--A 1621 AAC-G-AUGC C--CA-CU-- -------A|G -GU-GU-GGG -GG-GG---- ---------- 1681 -(-UA-A-)- ---------- ---------- ---------- -------UCC -CUCCG-UGC 1741 UG--AA---- --GC-(UAA- ---C)G-CG- UUAA-GUGGG C|C|G-CCU- G-GGGAGUAC 1801 GCC-C---(G CAA)---G-G GU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC G-U-GU-GGU -UUAAUU-GG -(AUGCUA-A G)--CCAAGA 1921 A-CCUUA-CC AGG-GC-UUG ACA-UG|--- -------C-C ---GGUG--- GUA----CCU 1981 -CCC-C--(- GAAA-)-GGG -GUAGGGA-- CC-------C AGUCC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GGACUG---- ----GG---| AGC-CG-GCA |---C|A--G 2161 GU-GG-UGCA CG|G-CCG-- UCG-UCA|-G C-U---CG-U |GC-C(-GUG A)-GGUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-CU-G |-CC--CCU- 2281 AG--UUGC-C AG-CGG---- ---------- ---------- ----(---UU ---CGG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CCG|G 2701 G-CA-CU-C- U-AGG-GG-G A-CU-G-CCG --GC(-GA-C GA)-GCC-G- -GAGG-A-AG 2761 G-AG-GGG-A UG-ACG--UC -A-GGUA-CU CGU-G-CC-C CUUAU-G-CC -CU--GGGC- 2821 G-ACA-CA-C GCG--CUACA AUGGG-C-GG -UA--CAAUG GGU-U-G-C- GA-CCC-C(G 2881 -CGA)GGGG- ---------- GA-GCCAA-U CCCC--AAAG -CC-G-CCC- UCAGUUCGGA 2941 U-CGCAGGC- (UGCAAC-C- C)-GCCUGCG -UGAAGC-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGCCAU)-G CCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACG--- --CCA-CCCG A--GU-CGG- GG-GC-UCCC -GAA-GACAC 3121 C-UAC-C-CC -AA-CCC--- ---------- ---------- -----(---- -GAAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- GGGAGG-G-G G-GG-UGUCG A-GGGA-GAA CCU-GG-CG- AGG-GGGG-C 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAC C(GGA-A)GG UGCGGC--UG GAUCACCUCC 3361 UUUC|U~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS 2.2.4-STR 4376 bp RNA RNA 09-JAN-1999 DEFINITION 2.2.4 STR.EM_3_ISOLATE. ACCESSION No information KEYWORDS No information. SOURCE 2.2.4 STR.EM_3_ISOLATE. ORGANISM 2.2.4 STR.EM_3_ISOLATE. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 0 a 0 c 0 g 0 t 4376 others ORIGIN 1 x~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~-- ------~~~~ 541 ~~~~~~---- -~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~---~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- 1681 -(~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- -------~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~----~~~ 1981 ~~~~-~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~--- --~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~------ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~---~~ ---~~~--~~ 2341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- 3181 ---------- ---------- ---------- ------~)~~ ~~~~~~~~~~ ~~~~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS str.EM_3 4376 bp RNA RNA 02-JUL-1998 DEFINITION str. EM str. EM 3. ACCESSION No information KEYWORDS No information. SOURCE str. EM str. EM 3. ORGANISM str. EM. REFERENCE 1 AUTHORS Reysenbach,A.-L., Wickham,G.S. and Pace,N.R. TITLE community in Octopus Spring, Yellowstone National Park Phylogenetic analysis of the hyperthermophilic pink filament JOURNAL Appl. Environ. Microbiol. 60, 2113-2119 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: U05660|g454799 geog_source= Octopus Spring, Yellowstone Nat. Park biol_source= 84-88 deg. water isolate_name= EM 3 BASE COUNT 299 a 394 c 544 g 221 t 2918 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......GGC -UAAC-GC-- UGGC-AGC-G -UGC-CU--U AGCC-AUGCA A-GUC-GAGC 121 G--GG----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -GAAGGC-CC (--UU----- ---------- ---------- 241 --------AU -)GG-GUCUU C--------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-CC--- AGCG-GCGG- 361 -A-CG-GC-G GAGU---AAU -AC-ACCGC- UAA--CCU-G C-CCUA---G -GGAG-G-GG 421 -GAU-AA-CC U--------- ------GC-- C(-GAAA-)G -GUGG-G--C UAAUCCC-CC 481 AU-ACU---- ---------- -------C-U CC-C--U-U- --GGGG-(-- --------GC 541 AU-------- -)-CCCU--- GA-GG----G AG--GAAA-- ---GGGCC-- ---------- 601 --(------- ---GAGG--- ---)------ ---------| --GGCU--C- G--CCC---- 661 ----UGGG-- AGG---G-|G GCGGU----- -GG|----CC C--AUCA-G- GUA-G---UU 721 GG-UG-GG-( GU-AAC-GG) -C-CCACC-A A|-GCC-UA- AGA------- -----CG-GG 781 U-AG-C-CG| -G-CGU--(G -AGA)-GCGC ----GG-C-- CGG-C|C-CG -AGGGG-C-A 841 (CUGA-GA-C ACG)--GGCC -CCA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GG-C 901 UGG-AAAUGU G-GGCAAU-- GG-GG-(GAA A)-CCC-UGA CCCC|-GCGA CGCU-GC-GU 961 G-C-GG-G-A A-GAA--G-C CC(--UU-CG --)GG-GUGU AAA--CCGC| UUUU-GC-GG 1021 --GG-GAC-- GA-------- ---------( -----AGGAC ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CCC-U-GC G-AA--UAAG ---------C 1141 -CACGGCU-A ACCUC-GUG( CCA--GCAGC CGCGGUA-A) G-A-C-GGGG |-GUGG-C-- 1201 GAG-CGUUGC CC-GGAAUUA -CU-GGGC|U UAAA-GGGG- GUG-UAG-GC -G|-GC-UG- 1261 G-GU-GUG|U CGG---GCGU G-UAA-UC-U UG-GGG-C(- UC-A)A-CCC -CG-A-GGC- 1321 -UGCG-CCCG A-AAC-UACC U-AGCUA-GA GGG-----CG C-CA-GGGGG AGG-C|GGAA 1381 CU-CCCGGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UC-GGGGGG- AACA-CCGG- 1441 -A-G-GC(-G AA-G)GCGG- -CCUCCUG-- ---------- ---------- ---------G 1501 GGC--GU-AC CUGACG-CUG AG-G------ -------CC- C-GAAG-GC- UG-GGG-GA- 1561 GC-AAA-GG- -GG(AUUA-G AUAC)-CCC- ----CGUA-G UC----CCA- G-CA-GU--A 1621 AAC-G-AUGU G--GG-CU-- -------A|G -CG-GU-CUG -GC-C----- ---------- 1681 -(-UU-GA)- ---------- ---------- ---------- --------GG -CUGGG-UCG 1741 CG--AA---- --GG-(GAA- ---A)C-CG- AUAA-GCCCA C|C|G-CCU- G-GGGAGUAC 1801 GCC-C---(G CAA)---G-G GU-GAAACUC -AAA-GGAAU AG-ACGGG-A -G-C-CC--G 1861 C-A--CA-AG CGGCGG-AGC G-C-GU-GGU -UUAAUU-CG -(AUGCUG-A C)--CGAAGA 1921 A-CCUCA-CC CGG-GC-UUG ACA-UC|--- -------C-C ---GCCG-U- CAA----GCU 1981 UGCC-C--(- GAAA-)-GGG -UAGGUGA-- GC-------- CUACC----- --(GGA---- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------G A-)------- GGUAG----- ----GC---| AGG-CG-GGA |---C|A--G 2161 GA-GC-UGCA CG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GU AACCC-CU-G |-CC--CAU- 2281 AG--UUGC-C AG-CGG-GUC GCCCAC---- ---------- ----(---GU ---AG---)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- -----GUGGG CGAUGCCG|G 2701 G-GA-CU-C- U-AUG-GG-G A-CU-G-CCG --GC(-GA-G GA)-GCC-G- -GAGG-A-AG 2761 G-AG-GGG-A CG-ACG--UC -A-AGUC-CG UGU-G-GC-C CUUAU-G-UC -CG--GGGC- 2821 U-ACA-CA-C GCG--CUACA AUGGG-C-GG -UA--CAGAG GGA-A-G-C- GA-CCC-U(G 2881 -CGA)GGGG- ---------- GA-GCCGAAU CCCU--AAAA -CC-G-CCC- CCAGUUCGGA 2941 U-UGCAGGC- (UGAAAC-C- C)-GCCUGCA -UGAAGG-AG -GAGU-CGC- -UAGUA-AUC 3001 AC-CUA-(UC -AGCUAU)-G GGG-UGGUG- AAUAC-GUU- CCC-GGG-CU CUGUA----C 3061 UCACCGCCC- GUC-ACG--- --CCA-UGGG A--GC-CGG- GG-GU-GCCU -GAA-GCC-C 3121 C--AC-C--- ---------- ---------- --------GA GGGUG(-GGG UGAAGG---- 3181 ---------- ---------- ---------- -------)CA AACUC----- ---------- 3241 ---------- ---------- --GG-UGACU G-GGGC-G.. .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS 2.3-THERMO 4376 bp RNA RNA 09-JAN-1999 DEFINITION 2.3 THERMOPHILIC_ASSEMBLAGE. ACCESSION No information KEYWORDS No information. SOURCE 2.3 THERMOPHILIC_ASSEMBLAGE. ORGANISM 2.3 THERMOPHILIC_ASSEMBLAGE. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 0 a 0 c 0 g 0 t 4376 others ORIGIN 1 x~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~-- ------~~~~ 541 ~~~~~~---- -~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~---~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- 1681 -(~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- -------~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~----~~~ 1981 ~~~~-~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~--- --~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~------ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~---~~ ---~~~--~~ 2341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- 3181 ---------- ---------- ---------- ------~)~~ ~~~~~~~~~~ ~~~~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Ctm.prtlyt 4376 bp RNA RNA 02-JUL-1998 DEFINITION Coprothermobacter proteolyticus str. BT ATCC 35245 (T). ACCESSION No information KEYWORDS No information. SOURCE Coprothermobacter proteolyticus str. BT ATCC 35245 (T). ORGANISM Coprothermobacter proteolyticus. REFERENCE 1 AUTHORS Rainey,F. and Stackebrandt,E. TITLE Phylogenetic analysis of the bacterial genus Thermobacteroides indicates an ancient origin of Thermobacteroides proteolyticus JOURNAL Lett. Appl. Microbiol. 16, 282-286 (1993) STANDARD No information COMMENTS Organism information Culture collection: ATCC 35245 (T) Sequence information (bases 1 to 4376) Corresponding GenBank entry: X69335|g535108 Ref 1: incorrectly listed in Rainey & Stackebrandt as ATCC 35442 biol_source= tannery waste containing cattle manure isolate_name= BT NB: former name Thermobacteroides proteolyticus BASE COUNT 376 a 365 c 512 g 272 t 2851 others ORIGIN 1 .......... .......... .......... .......... ....UU(U-G A)U-CCU|-G 61 GCUCAG-GAC -GAAC-GC-- UGGC-GGC-G -UGC-CU--A AUGC-AUGCA A-GUC-GAGC 121 G--GG----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -CUACAA-UC (--UU----- ---------- ---------- 241 --------CG -)GA-UUGUA G--------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-CU--U AGCG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUAGG- UAA--UCU-A C-CCUU---G -AGAG-G-AG 421 -GAC-AA-CC U--------- ------CA-- G(-GAAA-)C -UGAG-G--C UAAACCU-UC 481 AU-ACG---- ---------- -------U-U CA-C--U-G- ---GUA-(-- --------GG 541 GA-------- -)-UAC---- UG-GU----G AA--GAAA-- ---GAGUUA- ----CC---- 601 --(------- ---GUUGA-- ---)------ -----GG--| -UAGCU---- G--CUG---- 661 ----AAGG-- AUG---A-|G CCUGC----- -GG|----CC C--AUCA-G- GUA-G---UU 721 GG-UG-AG-( GU-AAC-GG) -C-UCACC-A A|-GCC-GA- AGA------- -----CG-GG 781 U-AA-C-CG| -G-UCU--(G -AGA)-GGAU ----GU-C-- CGG-U|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GC-A 901 GGG-AAUCUU G-GUCAAU-- GG-GC-(GAA A)-GCC-UGA CCCA|-GCGA CGCC-GC-GU 961 G-G-AG-G-A A-GAA--G-U CC(--UU-CG --)GG-GCGU AAA--CUCC| UGGA-CU-GG 1021 --GG-GAC-- GA-------- ---------( -----GUAAG ---------) ---------- 1081 ---------- ---------- --GA-CGGU- A-CCC-C-AG U-AG--AAAG ---------G 1141 -GACGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) A-A-C-GUAG |-GUCC-C-- 1201 GAG-CGUUGU UC-GGAUUCA -CU-GGGU|G UAAA-GGGC- GCG-UAG-GU -G|-GU-UG- 1261 U-CU-GUG|U CUC---AUGU G-AAA-AC-U CA-GGG-C(- UC-A)A-CUC -UG-A-GAU- 1321 -UGCG-UGGG A-AAC-UAGG C-AGCUA-GA GGA-----CG G-UA-GAGGG GAG-U|GGAA 1381 UU-CCCGGU- GUA-GCG(-G UAAAA)-UGC -GU-AGAU-A UC-GGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -CUCUCUG-- ---------- ---------- ---------G 1501 GCC--GA-UC CUGACG-CUG AG-G------ -------CG- C-GAAA-GC- UA-GGG-GA- 1561 GC-GAA-CC- -GG(AUUA-G AUAC)-CCG- ----GGUA-G UC----CUA- G-CC-GU--A 1621 AAC-G-AUCC C--UG-CU-- -------A|G -GU-GU-UGG -GG-GG---- ---------- 1681 -(UAA-AG)A ---------- ---------- ---------- -------CCC -UUCAG-UGC 1741 CG--AA---- --GC-(CAA- ---C)G-CG- AUAA-GCAUC C|C|A-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G UU-GAAACUC -AAA-GGAAU UG-GCGGG-G -G-U-CC--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AGG-GU-UUG ACA-UG|-C- ---------A ---GGUG--- GUA----GGA 1981 -ACC-U--(- GAAA-)-GGG -G-GACGA-- CC-------- CAACC----- --(GU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------A A-)------- GGGAG----- ----GG---| AGC-CA-GCA |---C|A--G 2161 GU-GU-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GC-C(-GUG A)-GGUGU-C 2221 GG-C-(UUAA -GU)-GCCGU AA-------- CGAG-C--GC AACCC-UC-A |-UC--CCU- 2281 AA--UUGC-U CC-UGA---- ---------- ---------- CAGG(---UA ---AAA--)G 2341 GG-------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----UCA|G 2701 AGCA-CA-A- U-AGG-GA-G A-CC-G-CUG --GC(-GA-A GA)-GCC-A- -GAGG-A-AG 2761 G-GG-AGG-A UG-ACG--UC -A-AGUC-AG CAU-G-GC-C UUUAU-G-CC -CU--GGGC- 2821 U-ACA-CA-C AUG--CUACA AUGCA-G-GG -UA--CAACG GGA-A-G-C- GA-AGC-C(G 2881 -CGA)GGUG- ---------- GA-GCAAA-U CCCCA-AAAG -CC-C-UGC- UCAGUUCGGA 2941 U-CGCACGC- (UGAAAU-U- C)-GCGUGCG -UGAAGU-CG -GAGU-CGC- -UAGUA-ACC 3001 GU-GGA-(UC -AGC-AA)-G CCG-CGGUG- AAUAC-GUU- CUC-GGG-CC UUGCA----C 3061 ACACCGCCC- GUC-AAG--- --CCA-CCCG A--GU-CGG- GU-UC-ACCA -GAA-G-GC- 3121 ------G-GU -AA-CC---- ---------- ---------- -----(---- -GAAG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- ---AGG---- G-CCGGA-CG A-CGGU-GUG CCU-GG-UA- AGG-AGGG-C 3301 U---AAGUC- GUAA-CAAGG UAGCU-GUAC C(GGA-A)GG UGCGGC--UG GAUCACCUCC 3361 UCCU|U.... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS str.EM_19 4376 bp RNA RNA 02-JUL-1998 DEFINITION str. EM str. EM 19. ACCESSION No information KEYWORDS No information. SOURCE str. EM str. EM 19. ORGANISM str. EM. REFERENCE 1 AUTHORS Reysenbach,A.-L., Wickham,G.S. and Pace,N.R. TITLE Phylogenetic analysis of the hyperthermophilic pink filament community in Octopus Spring, Yellowstone National Park JOURNAL Appl. Environ. Microbiol. 60, 2113-2119 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: U05662|g454801 geog_source= Octopus Spring, Yellowstone Nat. Park biol_source= 84-88 deg. water isolate_name= EM 19 BASE COUNT 326 a 397 c 520 g 216 t 2917 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......GGC -GAAC-CC-- UGGC-GGC-G -UGC-CU--C ACCC-AUGCA A-GCC-GAGC 121 G--AC----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ACAGGUC-GG (--GC----- ---------- ---------- 241 --------AA -)CC-GACCU GU-------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-GG--- AGCG-GCGA- 361 -A-CG-GC-C GAGU---AAU -AC-ACAGG- UAA--CCU-A C-CCUC---A -GGAA-G-GG 421 -GAU-AA-CC U--------- ------GG-- G(-GAAA-)C -CCAG-G--C UAAUACC-CU 481 AU-AAG---- ---------- -------C-C CA-C--A-U- ---CUC-(-- --------GG 541 AU-------- -)-GGG---- AU-GU----G GG--AAAA-- ---GGGUG-- ----CCGGG- 601 --(------- --GUAAAA-- ---)------ --CCUGG--| --UG-C--C- G--CCU---- 661 ----GAGG-- AUG---G-|G CCUGU----- -GU|----CC C--AUCA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAU-GG) -C-CCACC-A A|-GGC-UA- UGA------- -----CG-GG 781 U-AG-C-CG| -A-CCU--(G -AGA)-GGGU ----GG-U-- CGG-C|C-GG -ACCGG-C-A 841 (CUGA-GA-C ACG)--GGCC -GGA-C-UCC -(UAUG)--G GAG-GC-AG- C-A---GG-G 901 -G---AUCUU G-GGCAAU-- GG-GU-(GAA A)-GCC-UGA CCCA|-GCGA CGCC-GC-GU 961 G-C-GG-G-A A-GAA--G-C CC(--CU-CG --)GG-GUGU AAA--CCGC| UGUC--GGGA 1021 --GG-GACAA AGAGCUC-CC --C------( -----AAAAG ---------) ------G-GA 1081 ---------- -------GCU U-GA-UGGU- A-CCU-C-CG G-AG--GAAG ---------G 1141 -GACGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GUCC-C-- 1201 AAG-GGUUGC CC-GGAGUGA -CU-GGGC|G UAAA-GGGU- CCG-UAG-GC -G|-GC-CU- 1261 G-GU-AAG|U CUC---CCGU G-AAA-GC-U GC-CCG-C(- UC-A)A-CGG -GC-A-GAG- 1321 -GUCG-GGAG A-UAC-UGCU G-GGCUC-GG GAC-----CG G-CA-GGGGG GAC-U|GGAA 1381 UU-CCCGGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UC-GGGAGG- AACG-CCGA- 1441 -U-G-CC(-G AA-G)GGGG- -GUCCCUA-- ---------- ---------- ---------G 1501 GCC--GG-CU CCGACG-CUG AG-G------ -------GA- C-GAAA-GC- UG-GGG-GA- 1561 GC-GAA-CC- -GG(AUUA-G AGAC)-CCG- ----GGUA-G UC----CCA- G-CC-GU--C 1621 AAC-G-AUGG G--UG-CU-- -------A|G -GG-CG-GGG -UA------- ---------- 1681 -(-AA-U-)- ---------- ---------- ---------- ---------C -CUCGC-GCC 1741 CG--AA---- --GC-(UAA- ---C)G-CG- UUAA-GCACC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G C--GAAACUC -AAA-CGAAU UG-ACGGG-G -A-C-CC--G 1861 A-A--CA-AG CCGCGG-UGC A-U-UU-GGU -UUAAUU-CG -(AUGCAG-C G)--CGAAGA 1921 A-CCUUA-CC CGG-GC-UUG ACA-UG|--- -------C-C ---AGCU-C- AAG----CCU 1981 -GCC-C--(- GAAA-)-GGG -U-AAGGUG- GG-------C UGGGC----- --(GAU---- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------G A-)------- GUCCAG---- ----CC---| AGC-UG-GCA |---C|A--G 2161 GU-GC-UACA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GC-C(-GUG A)-GGCGU-C 2221 GG-G-(UUAA -GU)-CCCAG AA-------- CGAG-C--GC AACCC-CU-G |-CC--CGC- 2281 UG--UUGC-C AU-UCCCC-- ---------- ---------- ----(---GA ---GA---)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---GGGGA|G 2701 G-CA-CU-C- U-GCG-GG-G A-CU-G-CCG --GC(-G-AA GA)-GUC-G- -GAGG-A-AG 2761 G-AG-GGG-A CG-ACG--UC -A-AGCC-CG CAU-G-GC-C CUUAU-G-CC -CG--GGGC- 2821 U-ACA-CA-A GUG--CAACA AUGGC-C-GG -GA--CAAAG GGA-U-G-C- GA-GGC-C(G 2881 -CAA)GGCU- ---------- GA-GCGAA-U CCCAA-AAAC -CC-G-GUC- UUAGUUCGGA 2941 U-CGGGGUC- (UGCAAC-C- C)-GACCCCG -UGAAGG-AG -GAGU-GGC- -UAGUA-AUC 3001 GC-GGA-(UC -ACGUAC)-G CCG-CGGUG- AAUAC-GUU- CCC-GGG-UC CUGUA----C 3061 ACACCGCCC- GU--ACG--- --CCA-UGGA A--GU-CAC- CU-GC-ACAG -GAA-A-UCC 3121 C--------- ---------- ---------- ---------- -----(---- CAAAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- ---------- --GG-GA-CG A-AUGU-GUG GGU-GG-CG- ACU-GGGG-C 3301 G......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS env.A53n 4376 bp RNA RNA 02-JUL-1998 DEFINITION clone A53n.. ACCESSION No information KEYWORDS No information. SOURCE clone A53n. ORGANISM clone A53n. REFERENCE 1 AUTHORS Pedersen,K., Arlinger,J., Ekendahl,S. and Hallbeck,L. TITLE 16S rRNA gene diversity of attached and unattached bacteria in boreholes along the access tunnel to the AEspoe hard rock laboratory, Sweden JOURNAL FEMS Micrbiol. Ecol. 19, 249-262 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X91476|g987781 BASE COUNT 100 a 76 c 101 g 70 t 4029 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .....GUUAU CC-NNAUUUA -UU-GGN-|G UAAA-GNGU- CUG-UAG-NG -U|-CC-UG- 1261 C-AC-AAG|U CCC---CGGU C-AAA-GC-C CA-CCG-C(- UN-A)A-CGG -UG-G-AAC- 1321 -UGCC-AGGG A-AAC-UAGC A-GGAUU-GA GGU-----UG G-GA-GAGGU AAG-N|GGAA 1381 UU-GCUGGU- GUA-GUA(-G UAAAA)-UGC -GU-UAAU-A UC-AGCAAG- AACA-CCAA- 1441 -A-G-GC(-G AA-G)GCAG- -CUUACUG-- ---------- ---------- ---------G 1501 AAC--AC-AC CUGACG-CUG AG-A------ -------GA- C-GAAA-GC- GU-GGG-GA- 1561 GC-GAA-UG- -GG(AUUA-G AUAC)-CCC- ----AGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGG A--UG-CU-- -------A|G -GC-UU-U-G -GC-AG---- -U-------- 1681 -(AUC-GA)C C--------- ---------- ---------- -------CUG -CCAGA-GUC 1741 GU--UUAAAC AAGU-(UAA- ---C)A-CC- UUAA-GCAUC C|C|G-CCU- G-GGAAGUAC 1801 GGC.....(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS env.A58L 4376 bp RNA RNA 02-JUL-1998 DEFINITION clone A58L.. ACCESSION No information KEYWORDS No information. SOURCE clone A58L. ORGANISM clone A58L. REFERENCE 1 AUTHORS Pedersen,K., Arlinger,J., Ekendahl,S. and Hallbeck,L. TITLE 16S rRNA gene diversity of attached and unattached bacteria in boreholes along the access tunnel to the AEspoe hard rock laboratory, Sweden JOURNAL FEMS Micrbiol. Ecol. 19, 249-262 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X91481|g987786 BASE COUNT 96 a 77 c 102 g 81 t 4020 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) ......GAAG |-GCCC-C-- 1201 UAG-CGUUAU CC-GGAUUUA -UU-GGGC|G UAAA-GGGU- CUG-UAG-GC -G|-GU-CU- 1261 A-UU-ACA|U CUU---CUGU U-AAA-UC-C CA-AGG-C(- UC-A)A-CCU -UG-G-AAC- 1321 -CGCG-GAAG A-GAU-GGGU A-GACUA-GA GGC-----CG G-UA-GAGGU AAG-C|GGAA 1381 UU-GUCGGU- GUA-GGG(-G UUAAA)-UCC -GU-UAAU-A UC-GACAGG- AACA-CCAA- 1441 -A-U-GC(-G AA-G)GCAG- -CUUACUA-- ---------- ---------- ---------G 1501 AAC--GA-GC CUGACG-CUG AG-A------ -------GA- C-GAAA-GC- GU-GGG-UA- 1561 GC-GAA-UG- -GG(AUUA-G AUAC)-CCC- ----AGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGG A--UG-CU-- -------A|A -GC-AU-UGG -AA-GU---- ---------- 1681 -(UUC-GA)C C--------- ---------- ---------- --------CU -UCCAG-UGU 1741 UG--UUCACU UAAS-(UAA- ---C)G-CC- UUAA-GCAUC C|C|G-CCU- G-G....... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Syn.livid2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Synechococcus lividus str. y-7c7b-S. ACCESSION No information KEYWORDS No information. SOURCE Synechococcus lividus str. y-7c7b-S. ORGANISM Synechococcus lividus. REFERENCE 1 AUTHORS Ward,D.M., Weller,R. and Bateson,M.M. TITLE 16S rRNA sequences reveal uncultured inhabitants of a well-studied thermal community JOURNAL FEMS Microbiol. Rev. 75, 105-116 (1990) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X67093 (bases 1 to 233) isolate_name= y-7c7b-S NB: The genus name should have brackets around it this is incorrectly named Ward et al. probably mixed up the 2 seqs/org. BASE COUNT 126 a 154 c 207 g 88 t 3801 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|.....C C--HANA-N- CUN-N---UU 721 NG-UN-GG-( NU-HAU-NG) -C-CCACH-H A|-GGC-NA- CNA------- -----CG-GG 781 U-AG-C-HG| -G-CHU--(N -ANA)-GGGH ----NG-U-- CNC-H|H-AC -NCGGG-H-H 841 (CUNA-NA-H HCG)--GGCH -NNH-C-HCH -(HHHG)--G GHN-NH-HG- H......... 901 ....AAUCUU N-GGCAAU-- NG-GC-(NNA A)-GCC-UNA CCCA|-GCGA CGCN-GN-NH 961 N-G-GG-G-A A-NAA--G-G CU(--HH-NN --)GU-HGUH AAC--CCNN| NUUC--U-NG 1021 --AG-GAA-- GA-ACCC-AG --GGN-AGG( U----NAAHN A----C---) CNNU-C.... 1081 .......... .......... ...A-CGNH- H-CUC-C-AG N-AG--AAA- ---------S 1141 -CNCGGC... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... ......U-GA GGG-----CC G-NA-GAGGC UNG-C|GGAA 1381 UU-CCCGGU- GUH-GGG(-G UNAAA)-UCC -GU-AGAU-A UC-GGGAGG- AACA-CCGG- 1441 -U-G-GG(-G AA-G)CCNG- -CYAGCUN-- ---------- ---------- ---------G 1501 ACG--GU-UC CUNACG-CUG AG-G------ -------CA- C-NAAA-GC- GU-GGG-GA- 1561 GC-WAA-CC- -GG(AUUA-G AUAC)-CCG- ----GGUW-G UC----CAC- G-CC-GU--N 1621 AAC-G-AUGG G--CN-CU-- -------W|G -GN-NU-GGG -GG-U----- ---------- 1681 -(-NA-NN)- ---------- ---------- ---------- --------NC -CUCUN-UGC 1741 CG--UA---- --GC-(UNA- ---C)G-CG- UNNA-GCGCN N|N|G-CCN- N-GGGAGNNN 1801 GGC-S---(G CAA)---G-G C......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... .......G|G 2701 G-CN-CU-C- U-NAG-GN-N A-CU-G-CHG --GG(-GA-N NA)-CHC-G- -GAGG-A-AG 2761 G-NN-GGN-A UN-ACG--UN -A-AGUC-NU NNU-N-GC-C NNNNU-N--C -NN--GGGC- 2821 U-ACA-CA-C GUN--CUHNH CNNHN-G-GG -GG--UACAN NGG-G-U-N- NG-AAC-H(N 2881 -CHN)GGGN- ---------- GN-GCUNA-U CCCAG-AAAG -CC-C-NNC- UCAGUUCGGA 2941 U-CGGGGUC- (UGCAAC-U- C)-GACCCCG -UGAAGC-CG -GAAU-CGC- -UNGUA-AUG 3001 GC-GGA-(UC -AGC-AN)-G CCG-CNGUN- AA........ .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Tdb.commun 4376 bp RNA RNA 02-JUL-1998 DEFINITION Thermodesulfobacterium commune str. YSRA-1 ATCC 33708 (T). ACCESSION No information KEYWORDS No information. SOURCE Thermodesulfobacterium commune str. YSRA-1 ATCC 33708 (T). ORGANISM Thermodesulfobacterium commune. REFERENCE 1 AUTHORS Woese,C.R. JOURNAL Unpublished (1986) STANDARD No information COMMENTS Organism information Culture collection: ATCC 33708 (T) Sequence information (bases 1 to 4376) Corresponding GenBank entry: L10662 ATCC 33708 (T) = DSM 2178 geog_source= Ink Hot Spring, Yellowstone National Park biol_source= mud isolate_name= YSRA-1 NB: oligo of 7 isolated bases removed at ~933r because it disagreed with universal pattern Referred to as the type strain former name Thermodesulfotobacterium commune BASE COUNT 278 a 327 c 420 g 220 t 3131 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~UUCCCUG AGGGUU(U-G A)U-CCU|-G 61 GCUCAG-GGU -GAAC-GC-- UAGC-GGC-G -CGC-CU--A ACCC-AUGCA A-GUC-GAGC 121 G--GG----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --AAAGG-GU (--UU----- ---------- ---------- 241 --------CG -)GC-CC... .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... ..GU---AAC -AC-G....- .......... .......... .......... 421 .GAU-AA-CU A--------- ------CC-- C(-G....). ......G--C UAAUACC-G. 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. CUCGC----- -GG|----CC C--AUCA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAU-GG) -C-CCACC-A A|-GGC-GA- CGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGU ----GG-U-- CGG-C|C-AC -GCGGG-C-A 841 (CUGA-GA-C ACG)--GGCC -NGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GG-G 901 GGG-AAUCUU G-GGCAAU-- GG-GY-(GAA A)-GCC-UGA CCCA|-GCGA CGCN-NN-NU 961 G-G-GG-G-A A-GAA--G-G CC(--UU-CG --)GG-UCGU AAA--CCCC| UGUU-CU-GG 1021 --AG-GAA-- GA-ACCC-AG --GGU-AGG( U----GAAUA -----A---) CCUA-UC-CU 1081 ---------- -------GGC U-GA-CGGU- A-CUC-C-AG G-AG--AAAG ---------C 1141 -CCCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GCAG |-GUGN-N-- 1201 UAG-CGUUGC CC-NGAAUUA -CU-GGGC|G UAAA-GGGU- GCG-UAG-GC -G|-GC-UG- 1261 G-AC-AAG|U CAU---AGGU U-AAA-GC-C CG-GAG-C(- UC-A)A-CUC -CG-N-UAA- 1321 -GGCC-UAUG A-UAC-UGUC U-NNCUU-GA GGG-----CC G-GA-GAGGC UNG-C|GGAA 1381 UU-CCCGGU- GUA-GGG(-G UGAAA)-UCC -GU-AGAU-A UC-GGGAGG- AACA-CCGG- 1441 -U-G-GG(-G AA-G)CCNG- -CUAGCUG-- ---------- ---------- ---------G 1501 UCG--GU-UC CUGACG-CUG AG-G------ -------CA- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CC- -GG(AUUA-G AUAC)-CCG- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGG G--CN-CU-- -------A|G -GU-GU-GGG -GG-U----- ---------- 1681 -(-GA-AA)- ---------- ---------- ---------- --------GC -CUCUG-UGC 1741 CG--UA---- --GC-(UAA- ---C)G-CG- UUAA-GCGCC C|C|G-CCU- G-GGGAGUAC 1801 G.......(. ...)...... ..-GAAACUC -AAA-GGAAU UG........ .......... 1861 .......... .......... ........GU -UUAAUU-CG -(NNNNAA-A G)--CGAAGA 1921 A-CCUUA-CC UGG-GC-AUG ACA-UG|--- -------C-G ---AGGG-AG UAC----CCU 1981 -GGU-G--(- GAAA-)-CAC -C-GGGAAA- GC------GU AGGGG----- --(GU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------U A-)------- UCUCUAC--- ----GG--G| CUC-UA-GCA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-CU-G |-CC--CUU- 2281 AG--UUGC-C AU-CGG---- ---------- ---------- ----(---UU ---CGG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CCG|G 2701 G-CA-CU-C- U-AAG-GN-N A-CU-G-CCG --GG(-GA-U AA)-CCC-G- -GAGG-A-AG 2761 G-AG-GGG-A UG-ACG--UC -A-AGUC-CU CAU-G-GC-C CUUAU-G-CC -CA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGG-G-GG -UA--CAGAG GGU-U-G-C- GA-ACC-C(G 2881 -CAA)GGGG- ---------- GA-GCUAA-U CCCAG-AAAG -CC-C-UCC- UCAGUUCGGA 2941 U-CGGGGUC- (UGCAAC-U- C)-GACCCCG -UGAAGC-CG -GAAU-CGC- -UAGUA-AUG 3001 GC-GGA-(UC -AGC-AU)-G CCG-CCGUG- AAUAC-GUU- CCC-G..... ..GUA----C 3061 ACACCGCCC- GUC-ACG--- --CCA-CG.. .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS 2.4-GREEN 4376 bp RNA RNA 09-JAN-1999 DEFINITION 2.4 GREEN_NON-SULFUR_BACTERIA_AND_RELATIVES. ACCESSION No information KEYWORDS No information. SOURCE 2.4 GREEN_NON-SULFUR_BACTERIA_AND_RELATIVES. ORGANISM 2.4 GREEN_NON-SULFUR_BACTERIA_AND_RELATIVES. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 0 a 0 c 0 g 0 t 4376 others ORIGIN 1 x~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~-- ------~~~~ 541 ~~~~~~---- -~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~---~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- 1681 -(~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- -------~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~----~~~ 1981 ~~~~-~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~--- --~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~------ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~---~~ ---~~~--~~ 2341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- 3181 ---------- ---------- ---------- ------~)~~ ~~~~~~~~~~ ~~~~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS 2.4.1-CHLO 4376 bp RNA RNA 09-JAN-1999 DEFINITION 2.4.1 CHLOROFLEXUS_SUBDIVISION. ACCESSION No information KEYWORDS No information. SOURCE 2.4.1 CHLOROFLEXUS_SUBDIVISION. ORGANISM 2.4.1 CHLOROFLEXUS_SUBDIVISION. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 0 a 0 c 0 g 0 t 4376 others ORIGIN 1 x~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~-- ------~~~~ 541 ~~~~~~---- -~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~---~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- 1681 -(~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- -------~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~----~~~ 1981 ~~~~-~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~--- --~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~------ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~---~~ ---~~~--~~ 2341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- 3181 ---------- ---------- ---------- ------~)~~ ~~~~~~~~~~ ~~~~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS 2.4.1.1-TM 4376 bp RNA RNA 09-JAN-1999 DEFINITION 2.4.1.1 TMC.ROSEUM_ASSEMBLAGE. ACCESSION No information KEYWORDS No information. SOURCE 2.4.1.1 TMC.ROSEUM_ASSEMBLAGE. ORGANISM 2.4.1.1 TMC.ROSEUM_ASSEMBLAGE. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 0 a 0 c 0 g 0 t 4376 others ORIGIN 1 x~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~-- ------~~~~ 541 ~~~~~~---- -~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~---~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- 1681 -(~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- -------~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~----~~~ 1981 ~~~~-~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~--- --~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~------ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~---~~ ---~~~--~~ 2341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- 3181 ---------- ---------- ---------- ------~)~~ ~~~~~~~~~~ ~~~~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS env.PAD20 4376 bp RNA RNA 02-JUL-1998 DEFINITION unidentified soil. ACCESSION No information KEYWORDS No information. SOURCE unidentified soil. ORGANISM unidentified soil. REFERENCE 1 AUTHORS Ueda,T. TITLE Genetic diversity in soil bacteria JOURNAL Unpublished (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: D26207|g498408 library_source= unidentified soil bacterium from paddy field BASE COUNT 66 a 66 c 75 g 57 t 4112 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... ....C-UC-G |-CC--AUA- 2281 UG--UU-A-C ---------- ---------- ---------- ----(---AA ---GU---)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- --------|G 2701 U-------C- A-UAU-GG-G A-CC-G-CCG --GU(-AU-C AA)-GCC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AG CAU-G-GC-C UUUAU-A-UC -CG--GGGC- 2821 U-ACA-CA-C ACG--CUACA AUGGC-C-AG -UA--CAAUU GGU-U-G-C- AA-AGC-C(G 2881 -CGA)GGUG- ---------- GA-GCCAA-U CC-AU-AAAG -CU-G-GUC- UCAGUUCAGA 2941 U-UGCAGGC- (UGCAAC-C- C)-GCCUGCA -UGAAGU-CG -GAGU-UGC- -UAGUA-AAC 3001 GC-AGG-(AC -AGCUAU)-A CUG-CGUUG- AAUAC-GUU- CCC-GGG-CC UU........ 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS env.PAD21 4376 bp RNA RNA 02-JUL-1998 DEFINITION unidentified soil. ACCESSION No information KEYWORDS No information. SOURCE unidentified soil. ORGANISM unidentified soil. REFERENCE 1 AUTHORS Ueda,T. TITLE Genetic diversity in soil bacteria JOURNAL Unpublished (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: D26208|g498409 library_source= unidentified soil bacterium from paddy field BASE COUNT 65 a 68 c 80 g 51 t 4112 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... ......CU-A |-UU--GCC- 2281 AG--UUA--- ---CA----- ---------- ---------- ----(----- ---AG---)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|- 2701 ------U-C- U-GGC-GA-G A-CU-G-CCG --GU(-AU-A AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AG CAU-G-GC-C UUUAU-A-UC -CA--GGGC- 2821 U-ACA-CA-C ACG--CUACA AUGGG-C-GG -UA--CAAUG GGC-A-G-C- GA-AGG-G(G 2881 -CGA)CCUG- ---------- GA-GCGAA-U CCCACCAAAG -CC-G-UUC- GUAGUUCAGA 2941 U-UGCAGGC- (UGCAAC-C- G)-GCCUGCA -UGAAGC-CG -GAGU-UGC- -UAGUA-ACC 3001 GC-A-G-(UC -AGCCAU)-A CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UU........ 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Tmc.roseum 4376 bp RNA RNA 02-JUL-1998 DEFINITION Thermomicrobium roseum. ACCESSION No information KEYWORDS No information. SOURCE Thermomicrobium roseum. ORGANISM Thermomicrobium roseum. REFERENCE 1 AUTHORS Oyaizu,H., Debrunner-Vossbrinck,B., Mandelco,L., Studier,J.A. and Woese,C.R. TITLE The green non-sulfur bacteria: A deep branching in the eubacterial line of descent JOURNAL Syst. Appl. Microbiol. 9, 47-53 (1987) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: M34115 BASE COUNT 295 a 416 c 585 g 226 t 2854 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~GGGGAUGG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GGG -GAAC-GC-- UGGC-GGC-G -UGC-CU--A AUGC-AUGCA A-GUC-GGAC 121 G--GG----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ANGCACG-CN (--CU----- ---------- ---------- 241 --------CU -)GG-CGUGC CG-------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-AC--- CGUG-GCGG- 361 -A-CG-GG-U GCGU---AAC -AC-GUGGG- GAA--CCC-U C-CCGG---G -UGCG-G-GG 421 -GAU-AA-CC C--------- ------GG-- G(-GAAA-)C -UCGG-G--C UAAUACC-CC 481 AU-ACG---- ---------- -------C-U UG-G--C-U- ---GGC-(-- --------GG 541 UG-G------ -)-GCC---- GG-CC----A AG--GAAA-- ---GGCGCA- ----G----- 601 --(------- ---GCGA--- ---)------ -----C---| -UGUGC--U- G--UGC---- 661 ----UCGG-- AGG---G-|C CCUGC----- -GG|----CC U--AUCA-G- CUA-G---AC 721 GG-UA-GG-( GU-AAC-GG) -C-CUACC-G U|-GGC-GA- UGA------- -----CG-GG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GG-C-- CAG-C|C-AC -ACGGG-C-A 841 (CUGA-GA-C ACG)--GGCC -CGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GC-A 901 GGG-AAUCUU C-CGCAAU-- GG-GG-(GCA A)-CCC-UGA CGGA|-GCGA CGCC-GC-GU 961 G-C-GG-G-A G-GAA--G-C CC(--UU-CG --)GG-GUGU AAA--CCGC| UGUU-CG-GG 1021 --GG-GAC-- GA-------- ---------( -----UCGAG ---------) ---------- 1081 ---------- ---------- C-GA-CGGU- A-CCC-U-CG G-AG--CAAG ---------U 1141 -CCCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) G-A-C-GUAG |-GGGG-C-- 1201 GAG-CGUUAC CC-GGAGUCA -CU-GGGC|G UAAA-GGGC- GUG-UAG-GC -G|-GC-UG- 1261 G-GU-ACG|C CGC---GUGU G-AAA-GU-C CC-CGG-C(- UC-A)A-CCG -GG-G-AGG- 1321 -GUCG-CGCG G-GAC-GGCC U-GGCUC-GA GGG-----CG G-GA-GAGGC GGG-U|GGAA 1381 UU-CCCGGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UC-GGGAGG- AACG-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -CCCGCUG-- ---------- ---------- ---------G 1501 CCC--GU-AC CUGACG-CUG AG-G------ -------CG- C-GAAG-GC- GU-GGG-GA- 1561 GC-GAA-CC- -GG(AUUA-G AUAC)-CCG- ----GGUA-G UC----CAC- G-CA-GU--A 1621 AAC-G-AUGC G--GG-CG-- -------A|G -GU-GU-GGG -UG-G----- -U-------- 1681 -(GUU-GA)C C--------- ---------- ---------- --------CC -AUCCG-UGC 1741 CG--GC---- --GC-(CAA- ---C)G-CA- GUAA-GCCCG C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CAGCGG-AGC G-U-GU-GGU -UUAAUU-CG -(ACGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AGG-GC-UUG ACA-UG|--- -------C-C ---ACCG--- -AA----CCU 1981 -GGC-U--(- GAAA-)-GGC -U-GGGG--- UG-------- --CCC----- --(GGU---- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------G A-)------- GGG------- ----AG---| CGG-UG-GCA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GC-C(-GUG A)-GGUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-G |-GG--GUC- 2281 AG--UUA--- ---CG----- ---------- ---------- ----(---CG ---GG---)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|- 2701 ------U-C- U-GAC-CC-G A-CU-G-CCG --GG(-GA-A AG)-CCC-G- -GAGG-A-AG 2761 G-AG-GGG-A UG-ACG--UC -A-AGUC-AG CAU-G-GC-C CUGAC-G-CC -CU--GGGC- 2821 G-ACA-CA-C ACG--CUACA GUGAC-C-GG -GA--CAGUG GGC-A-G-C- GA-AGG-G(G 2881 -CGA)CCUG- ---------- GA-GCCAA-U CCCGC-AAAC -CC-G-GUC- GUGGUGGGGA 2941 U-CGCAGGC- (UGCAAC-C- C)-GCCUGCG -UGAACG-CG -GAGU-UGC- -UAGUA-ACC 3001 GC-CGG-(UC -AGCCAU)-A CGG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACG--- --UCA-CGAA A--GC-UGG- CU-UC-ACCU -GAA-G-CUG 3121 G-UGG-G-CC -AA-CCGGC- ---------- ---------- -----(---- -GCAC----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 --------GC UGGGGG-C-A G-CC-GU-CG A-GGGU-GGG GCU-GG-UG- AUU-GGGA-C 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAC C(GGA-A)GG NNNNGG--UG GAUCACCUCC 3361 UUUC|U~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Spb.thermo 4376 bp RNA RNA 02-JUL-1998 DEFINITION Sphaerobacter thermophilus str. 6022 DSM 20745 (T). ACCESSION No information KEYWORDS No information. SOURCE Sphaerobacter thermophilus str. 6022 DSM 20745 (T). ORGANISM Sphaerobacter thermophilus. REFERENCE 1 AUTHORS Demharter,W., Hensel,R., Smida,J. and Stackebrandt,E. TITLE Sphaerobacter thermophilus gen. nov., sp. nov. A deeply rooting member of the actinomycetes subdivision isolated from thermophilically treated sewage sludge JOURNAL Syst. Appl. Microbiol. 11, 261-266 (1989) STANDARD No information COMMENTS Organism information Culture collection: DSM 20745 (T) Sequence information (bases 1 to 4376) Corresponding GenBank entry: X53210 DSM 20745 (T) = ATCC 49802 isolate_name= 6022 BASE COUNT 236 a 313 c 400 g 176 t 3251 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 ...UG-GG-( GU-NAU-GG) -C-CUACC-G U|-GGC-GA- UGA------- -----CG-GG 781 U-NG-C-UN| -G-UCU--(G -AGA)-GGAC ----GA-U-- CAG-C|C-AC -ACGGG-G-A 841 (CUGA-GA-C ACG)--GCCC -GGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GC-G 901 NGG-AAUUUU C-CGCAAU-- GG-GC-(GCA A)-GCC-UAA YGGA|-GCGA CGCC-GC-GU 961 G-G-AG-G-A U-GCA--C-C C-(--UU-CG --)GG-GUGU AAA--CUCC| UUUU-CG-GG 1021 --GG-GAC-- GA-AG----- ---------( -----GCAG- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CCC-C-CG G-AA--GAAG ---------C 1141 -ACCGGCU-A ACUAC-GUG( CCA--GCAGC CCCGGUA-A) U-A-C-GUAG |-GGUG-C-- 1201 CAG-CGUUGU CC-GGAGUUA -CU-GGGC|G UAAA-GGGC- GCG-UAG-GC -G|-GC-UN- 1261 C-CC-GCG|U CGC---ACGU G-AAA-GC-C CC-CGG-C(- UC-A)A-CCG -GG-C-AGG- 1321 -GUCG-UGCG A-UAC-GGGC G-UGCUA-GA GGC-----AG G-GA-GAGGC UGG-U|GGAA 1381 UU-CCCGGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UC-GGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGC- -CAGCUNG-- ---------- ---------- ---------- 1501 CCC--UN-AC CUGACG-CU- ---N------ -------AG- C-GAAAGGC- GC-GGG-NA- 1561 GC-GAA-CG- -GG(AUUA-G AUAC)-CCC- ----GGUA-G UC----CGC- G-CA-GU--A 1621 AAC-G-CUGU G--GA-CU-- -------A|G -GU-GU-N-G -GA-GGU--- ---------- 1681 -(GUA-GA)- ---------- ---------- -C-------- -------CCC -UUCCG-UG- 1741 CC--GG---- --GC-(UAA- ---C)G-CA- GUAA-GUCCA C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGCGG-AGC G-U-GU-GGU -UUAAUU-CG -(AUGNAA-C G)--CGAAGA 1921 A-CCUUA-CC AGG-GC-UUG ACA-UC|--- ---------C ---CCGG--- -AA-----CC 1981 -CCG-G--(- GAAA-)-CCG -G-GGNN--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------CG G-)------- GG-------- ----AG---| CCG-GG-AGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UU.. ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .........G A-CU-G-CCG --GG(-GU-C AA)-CCC-G- -GAGG-A-AG 2761 G-GG-UGG-A UG-ACG--UC -A-AGUC-CG CAU-G-GC-C CUUA--G-CC -CU--GGGC- 2821 G-ACA-CA-C ACG--CUACA AUGGC-C-GG -GA--CAGCG GGC-G-G-C- CA-AGC-G(G 2881 -CAA)CGCG- ---------- GA-GCCAA-U CCCUC-AAAC -CC-G-GUC- UCAGUUCGGA 2941 U-UGGGGGC- (UGCAAC-U- N)-GCCCCCA -UGAAGG-CG -GAGU-UGC- -UAGUA-ACC 3001 GC-AGG-(UC -AGCCAU)-A CUG-CGGUG- AAUAU-GUU- CCC-NGG-CC UUGUA----C 3061 ACACCGCCC- GUC-AGC--- --UCA-CGAA A--GC-CGG- CA-AC-ACCU -GAA-N-CCG 3121 G-UGG-G-CC -AA-CCC--- ---------- ---------- -----(---- -CAUAC---- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- GGGAGG-C-A G-CC-GU-CG A-CGGG-UGG GCU-CG-UC- AU........ 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Her.aurant 4376 bp RNA RNA 02-JUL-1998 DEFINITION Herpetosiphon aurantiacus. ACCESSION No information KEYWORDS No information. SOURCE Herpetosiphon aurantiacus. ORGANISM Herpetosiphon aurantiacus. REFERENCE 1 AUTHORS Oyaizu,H., Debrunner-Vossbrinck,B., Mandelco,L., Studier,J.A. and Woese,C.R. TITLE The green non-sulfur bacteria: A deep branching in the eubacterial line of descent JOURNAL Syst. Appl. Microbiol. 9, 47-53 (1987) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: M34117 BASE COUNT 331 a 359 c 465 g 265 t 2956 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~NUUGUCGG CGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAC -GAAC-GC-- UGGC-GGC-G -UGC-CU--A AUGC-AUGCA A-GUC-GAAC 121 G--CA----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ------U-UC (--UU----- ---------- ---------- 241 --------CG -)GA-A---- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-GG--- AGUG-GCGC- 361 -A-CG-GC-U GAGG---AAC -AC-GUGAC- UAA--CCU-A C-CCCG---G -UGUG-G-GG 421 -GAU-AA-CG G--------- ------GU-- C(-GAAA-)G -ACUC-G--C UAAUCCC-GC 481 CA-UAC---- ---------- -------G-A U--------- ---NGC-(-- --------CU 541 CG-------- -)-GCG---- ---------G AG--GAAA-- ---GCC---- ---------- 601 --(------- ---GUAA--- ---)------ ---------| ----GG--C- G--CAC---- 661 ----UGGN-- NGG---G-|G GUCGC----- -GU|----CC C--AUUA-G- AUA-G---UU 721 GG-UG-UG-( GU-AAU-GG) -C-GCACC-A A|-GUC-GA- UGA------- -----UG-GG 781 U-CU-C-UG| -G-UCU--(G -AGA)-GGNC ----GA-C-- CAG-A|C-AG -AUUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AAA-C-UCC -(UACG)--G GGN-GC-AG- C-A---GC-A 901 AGG-AAUUUU C-GGCAAU-- GG-GC-(GCA A)-GCC-UGA CCGA|-GCAA CGCC-GC-GU 961 G-G-AG-G-A U-GAC--G-G CU(--CU-UG --)GG-UUGU AAA--CUCC| UUUU-GG-GG 1021 --GG-GAC-- GA-------- ---------( ------UAA- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CCC-U-CC G-AA--UCAG ---------G 1141 -CCCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGGC-C-- 1201 AAG-CGUUGU CC-GGAAUUA -CU-GGGC|G UAAA-GCGU- GNN-UAG-GC -N|-GU-CG- 1261 A-UG-AUG|U GCC---GCGU G-AAA-GC-G CC-GGA-G(- UA-A)U-GCC -GG-C-CAG- 1321 -GUCG-CGGC A-GAC-ACGU U-GACUA-GA GGC-----UC G-CA-GAGGA ACG-U|GGAA 1381 UU-CCCGGU- GUA-GUG(-G UGAAA)-UGC -GU-AGAU-A UC-GGGAGG- AACA-CCAG- 1441 -U-G-GC(-G CA-A)GCGG- -CGUUCUG-- ---------- ---------- ---------G 1501 GCG--AG-AC CUGACA-CUG AG-C------ -------CA- C-GACG-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CA-GU--A 1621 AAC-G-AUGC A--UA-CC-- -------A|G -GU-GU-GGG -AU-GGCG-- ---------- 1681 -(-UU-CG)- ---------- ---------- CG-------- -------UCG -UUCCG-UGC 1741 CG--CA---- --GC-(UUA- ---C)G-CG- AUGA-GUAUG C|C|G-CCU- G-GGGACUAC 1801 GAG-C---(G CAA)---G-C UU-AAAACUC -AAA-GGAAU UG........ .........G 1861 C-A--CA-AG .......... ........GU -UUAAUU-CG -(ACGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UAG-UC-UUG ACA-UA|--- -------G-C ---ACUG--- -CA----AGC 1981 -UUC-G--(- GAAA-)-UGA -A-GUUCG-- C--------- ---CU----- --(U------ 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- AG-------- -----G---| GUG-UG-CUA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-CU-G |-UG--AGG- 2281 UG--UUA--- ---C------ ---------- ---------- ----(---AA ---GU---)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -------G|- 2701 ------U-C- A-CCU-CA-G A-CU-G-CCG --UU(-GUCA AC)-AAC-G- -GAGG-A-AG 2761 G-CG-GGG-A UG-ACG--UC -A-AGUC-CG CAU-G-GC-C CUUAC-G-AC -UA--GGGC- 2821 G-ACA-CA-C ACG--CUACA AUGGC-U-GG -GA--GAAUG CGC-C-G-C- GA-CCU-G(G 2881 -CAA)CAGG- ---------- CU-GCGAA-U CGAG--AACA -CC-A-GUC- ACAGUUCAGA 2941 U-UGGGGGC- (UGCAAC-U- C)-GCCCCCA -UGAAGG-CG -GAGU-UGC- -UAGUA-AUC 3001 GC-CGG-(UC -AGC-AU)-A CGG-CGGUG- AAUCA-GUA- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACG--- --UCA-UGGA A--GU-GGG- AA-AC-ACCU -GAA-G-UCC 3121 G-UG--G-CU -AA-CC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-C-A G-CG-GC-CG A-GGGU-GGG UCU-CG-UA- ACU-G..... 3301 .......... GUAA-CAAG. .......... .(.GA-A)G. .......... GAUCACCUCC 3361 UUUC|U~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS 2.4.1.2-CF 4376 bp RNA RNA 09-JAN-1999 DEFINITION 2.4.1.2 CFX.AURANTIACUS_GROUP. ACCESSION No information KEYWORDS No information. SOURCE 2.4.1.2 CFX.AURANTIACUS_GROUP. ORGANISM 2.4.1.2 CFX.AURANTIACUS_GROUP. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 0 a 0 c 0 g 0 t 4376 others ORIGIN 1 x~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~-- ------~~~~ 541 ~~~~~~---- -~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~---~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- 1681 -(~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- -------~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~----~~~ 1981 ~~~~-~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~--- --~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~------ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~---~~ ---~~~--~~ 2341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- 3181 ---------- ---------- ---------- ------~)~~ ~~~~~~~~~~ ~~~~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS env.OS_C2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Octopus Spring. ACCESSION No information KEYWORDS No information. SOURCE Octopus Spring. ORGANISM Octopus Spring. REFERENCE 1 AUTHORS Weller,R., Bateson,M.M., Heimbuch,B.K., Kopczynski,E.D. and Ward,D. TITLE Uncultivated cyanobacteria, Chloroflexus-like and Spirochete-like inhabitants of a hot spring microbial mat JOURNAL Appl. Environ. Microbiol. 58, 3964-3969 (1992) STANDARD No information REFERENCE 2 AUTHORS Ward,D.M., Bateson,M.M., Weller,R. and Ruff-Roberts,A.L. TITLE Ribosomal RNA analysis of microorganisms as they occur in nature JOURNAL Adv. Microb. Ecol. 12, 219-286 (1992) STANDARD No information REFERENCE 3 AUTHORS Weller,R., Weller,J.W. and Ward,D.M. TITLE 16S rRNA sequences of uncultivated hot spring cyanobacterial mat inhabitants retrieved as randomly primed cDNA JOURNAL Appl. Environ. Microbiol. 57, 1146-1151 (1991) STANDARD No information REFERENCE 4 AUTHORS Ward,D.M., Weller,R. and Bateson,M.M. TITLE 16S rRNA sequences reveal numerous uncultured microorganisms in a natural community JOURNAL Nature 345, 63-65 (1990) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: M62775 library_source= Octopus Spring microbial mat DNA from Yellowstone NP NB: IDENT:Chloroflexus relative; specif. rel. OS_C, OS-4 (OS20 ) BASE COUNT 232 a 305 c 377 g 173 t 3289 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. ...GC----- -GG|----CC C--AUCA-G- GUC-G---UU 721 GG-UG-GG-( GU-AAG-GG) -C-CUACC-A A|-GCC-GA- UGA------- -----CG-GG 781 U-AG-C-UG| -G-UCU--(G -GGA)-GGAU ----GA-C-- CAG-C|C-AG -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GC-A 901 AGG-AAUUUU C-GGCAAU-- GG-GC-(GCA A)-GCC-UGA CCGA|-GCAA CGCC-GC-GU 961 G-C-GG-G-A U-GAC--G-G CC(--UU-CG --)GG-UUGU AAA--CCGC| UUUU-CG-GG 1021 --GG...... .......... .........( .......... ......---) .......... 1081 .......... .......... .......GU- A-CC..C-CG G-AA--UCAG ---------C 1141 -CCCGGCU-A ACUCU-GUG( CCA--GCAGC CGCGGUA-A) G-A-C-AGAG |-GGGG-N-- 1201 GAG-CGUUGU CC-GGAGUCA -CU-GGGC|G UAAA-GCGC- GCG-CAG-GC -G|-GC-AA- 1261 C-CU-CAG|U GUC---GUGU G-AAA-GC-C CC-CGG-C(- UC-A)A-CCG -GG-G-GAG- 1321 -GCCA-UGGC A-AAC-UGGG U-CGCUC-GA GCU-----GY G-GA-GAGGC CCC-U|CGAA 1381 UU-GCCGGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UC-GGCAGG- AAGA-CCAA- 1441 -G-G-GG(-G AA-G)CCAG- -GGGGCUG-- ---------- ---------- ---------G 1501 CCG---C-AS SUGACG-CUG AG-G------ -------CG- C-GACA-GC- GU-GGG-GA- 1561 GC-AAA-CC- -GG(AUUA-G AUAC)-CCG- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA C--CA-CU-- -------C|G -GC-GU-GUG -GC-GAC--- -U-------- 1681 -(AUU-GA)C ---------- ---------- -G-------- -------UCG -CGGNG-NGC 1741 CC--UA---- --GC-(UCA- ---C)G-CG- AUAA-GUGGU C|C|G-CCU- G-GGAACUAC 1801 GAG-C---(N CAA)---S-S UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CAGCGG-AGN N-U-GU-GGU -UUAAUU-CG -(ACACAA-C C)--CGCAGA 1921 A-CCUUA-CC CAG-AC-UGG ACA-UG|--- -------A-C ---GGUG--- -CA----GAC 1981 -GG--C--(- GGAA-)-ACG -U-CGUCG-- C--------- ---CU----- --(GC----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- G-)------- AG-------- -----G---| GUC-CG-UCA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-CU-G |-CG--GUU- 2281 AG--UUA--- ---C------ ---------- ---------- ----(---CC ---GU---)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -------G|- 2701 ------U-C- U-AAC-CG-G A-CU-G-CCC --UU(-C--A --)-GG---- -GAGG-A-AG 2761 G-CG-GGG-A UG-ACG--UC -A-AGUC-CG CAU-G-GC-C CUUAC-G-UC -UG--GGGC- 2821 G-ACA-CA-C ACG--CUACA AUGGC-G-CC -GA--CAAUG CGU-C-G-C- UC-CCG-C(G 2881 -CAA)GCGG- ---------- -A-UGCYA-A UCGCC-AAAC -GG-N-GCC- CCAGUGCAGA 2941 U-CGGGGGC- (UGCAAC-U- C)-GCCCCCG -UGAAGG-CG -GAGU-UGC- -UAGUA-ACC 3001 GC-GUA-(UC -AGCCAU)-G GCG-CGGUG- AAUAC-GUA- CCC-GGG-CC UUG....... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS env.OS-4 4376 bp RNA RNA 02-JUL-1998 DEFINITION Octopus Spring. ACCESSION No information KEYWORDS No information. SOURCE Octopus Spring. ORGANISM Octopus Spring. REFERENCE 1 AUTHORS Ward,D.M., Bateson,M.M., Weller,R. and Ruff-Roberts,A.L. TITLE Ribosomal RNA analysis of microorganisms as they occur in nature JOURNAL Adv. Microb. Ecol. 12, 219-286 (1992) STANDARD No information REFERENCE 2 AUTHORS Weller,R., Weller,J.W. and Ward,D.M. TITLE 16S rRNA sequences of uncultivated hot spring cyanobacterial mat inhabitants retrieved as randomly primed cDNA JOURNAL Appl. Environ. Microbiol. 57, 1146-1151 (1991) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: M62774 library_source= Octopus Spring microbial mat DNA from Yellowstone NP NB: IDENT:Chloroflexus relative; specif. rel. OS_C, OS_C2 (OS20 ) BASE COUNT 231 a 302 c 371 g 174 t 3298 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. ...GC----- -GG|----CC C--AUCA-G- GUC-G---UU 721 GG-UG-GG-( GU-AAG-GG) -C-CUACC-A A|-GCC-GA- UGA------- -----CG-GG 781 U-AG-C-UG| -G-UCU--(G -GGA)-GGAU ----GA-C-- CAG-C|C-AG -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GC-A 901 AGG-AAUUUU C-GGCAAU-- GG-GC-(GCA A)-GCC-UGA CCGA|-GCAA CGCC-GC-GU 961 G-C-GG-G-A U-GAC--G-G CC(--UU-CG --)GG-UUGU AAA--CCGC| UUUU-CG-GG 1021 --GG...... .......... .........( .......... ......---) .......... 1081 .......... .......... .......GU- A-CC..C-CG G-AA--UCAG ---------C 1141 -CCCGGCU-A ACUCU-GUG( CCA--GCAGC CGCGGUA-A) G-A-C-AGAG |-GGGG-N-- 1201 GAG-CGUUGU CC-GGAGUCA -CU-GGGC|G UAAA-GCGC- GCG-CAG-GC -G|-GC-AA- 1261 C-CU-CAG|U GUC---GUGU G-AAA-GC-C CC-CGG-C(- UC-A)A-CCG -GG-G-GAG- 1321 -GCCA-UGGC A-AAC-UGGG U-CGCUC-GA GCU-----GY G-GA-GAGGC CCC-U|CGAA 1381 UU-GCCGGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UC-GGCAGG- AAGA-CCAA- 1441 -G-G-GG(-G AA-G)CCAG- -GGGGCUG-- ---------- ---------- ---------G 1501 CCG---C-AS SUGACG-CUG AG-G------ -------CG- C-GACA-GC- GU-GGG-GA- 1561 GC-AAA-CC- -GG(AUUA-G AUAC)-CCG- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA C--CA-CU-- -------C|G -GC-GU-GUG -GC-GAC--- -U-------- 1681 -(AUU-GA)C ---------- ---------- -G-------- -------UCG -CGGNG-NGC 1741 CC--UA---- --GC-(UCA- ---C)G-CG- AUAA-GUGGU C|C|G-CCU- G-GGAACUAC 1801 GAG-C---(N CAA)---S-S UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CAGCGG-AGN N-U-GU-GGU -UUAAUU-CG -(ACACAA-C C)--CGCAGA 1921 A-CCUUA-CC CAG-AC-UGG ACA-UG|--- -------A-C ---GGUG--- -CA----GAC 1981 -GG--C--(- GGAA-)-ACG -U-CGUCG-- C--------- ---CU----- --(GC----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- G-)------- AG-------- -----G---| GUC-CG-UCA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-CU-G |-CG--GUU- 2281 AG--UUA--- ---C------ ---------- ---------- ----(---CC ---GU---)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -------G|- 2701 ------U-C- U-AAC-CG-G A-CU-G-CCC --UU(-N--A --)-GG---- -GAGG-A-AG 2761 G-CN-GGG-A UG-ACG--UC -A-AGUC-CG CAU-G-GC-C CUUAC-G-UC -UG--GGGC- 2821 G-ACA-CA-C ACG--CUACA AUGGC-G-CC -GA--CAAUG CGU-C-G-C- UC-CCG-C(G 2881 -CAA)NNNN- ---------- -N-UGCUA-A UCGCC-AAAC -GN-N-NCC- CCAGUGNAGA 2941 U-CGGGGGC- (UGCAAC-U- C)-GCCCCCG -UGAAGG-CG -GAGU-UGC- -UAGUA-ACC 3001 GC-GUA-(UC -AGCCAU)-G GCG-CGGUG- AAUAC-GUA- CCC-GGG-CC UUG....... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS env.PAD5 4376 bp RNA RNA 02-JUL-1998 DEFINITION unidentified soil. ACCESSION No information KEYWORDS No information. SOURCE unidentified soil. ORGANISM unidentified soil. REFERENCE 1 AUTHORS Ueda,T. TITLE Genetic diversity in soil bacteria JOURNAL Unpublished (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: D26192|g498440 library_source= unidentified soil bacterium from paddy field BASE COUNT 53 a 78 c 86 g 42 t 4117 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... ......CC-G |-CG--GCC- 2281 AG--UUA--- ---C------ ---------- ---------- ----(---CU ---GU---)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -------G|- 2701 ------U-C- U-GGC-CG-G A-CA-A-UGC --U-(----U UC)--GG-G- -GAGG-A-AG 2761 G-CG-GGG-A UG-ACG--UC -A-AGUC-CG CAU-G-GC-U CUUAC-A-UC -UG--GGGC- 2821 G-ACA-CA-C ACG--CUACA AUGAC-G-CC -GA--CAGUG CGC-A-G-C- GA-CCC-G(G 2881 -CAA)CGGG- ---------- GA-GCGAA-U CGCC--AAAC -GG-C-GUC- UCAGUUCAGA 2941 U-CGGGGGC- (UGCAAC-U- C)-GCCCCCG -UGAAGG-CG -GAGU-UGC- -UAGUA-ACC 3001 GC-GUA-(UC -AGCCAC)-G GCG-CGGUG- AAUAC-GUA- CCC-GGG-CC UU........ 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS env.PAD2 4376 bp RNA RNA 02-JUL-1998 DEFINITION unidentified soil. ACCESSION No information KEYWORDS No information. SOURCE unidentified soil. ORGANISM unidentified soil. REFERENCE 1 AUTHORS Ueda,T. TITLE Genetic diversity in soil bacteria JOURNAL Unpublished (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: D26189|g498407 library_source= unidentified soil bacterium from paddy field BASE COUNT 56 a 73 c 80 g 50 t 4117 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... ......CU-A |-CG--GUC- 2281 AG--UUA--- ---C------ ---------- ---------- ----(---UC ---GU---)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -------G|- 2701 ------U-C- U-GGC-CG-G A-CU-G-CCG --U-(----U UU)--AC-G- -GAGG-A-AG 2761 G-CG-GGG-A UG-ACG--UC -A-AGUC-UG CAU-G-GC-U CUUAC-G-CC -UG--GGGC- 2821 G-ACA-CA-C ACG--CUACA AUGCC-G-UC -GA--CAAUG CGC-A-G-C- UA-CUG-C(G 2881 -UAA)GCAG- ---------- AU-GCUAA-U CGCC--AAAC -GA-C-GGC- CCAGUGCAGA 2941 U-UGGGGGC- (UGAAAC-U- C)-GCCCCCA -UGAAGG-CG -GAGU-UGC- -UAGUA-ACC 3001 GC-GUA-(UC -AGCCAU)-G GCG-CGGUG- AAUAC-GUA- CCC-GGG-CC UU........ 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS str.2022 4376 bp RNA RNA 02-JUL-1998 DEFINITION str. SBR2022. str. SBR2022. ACCESSION No information KEYWORDS No information. SOURCE str. SBR2022. str. SBR2022. ORGANISM str. SBR2022. REFERENCE 1 AUTHORS Bond,P.L., Hugenholtz,P., Keller,J. and Blackall,L.L. TITLE Bacterial community structures of phosphate-removing and non-phosphate-removing activated sludges from sequencing batch reactors JOURNAL Appl. Environ. Microbiol. 61 (5), 1910-1916 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X84565|g871686 isolate_name= SBR2022 BASE COUNT 82 a 102 c 134 g 53 t 4005 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... UGGC-GGC-G -UGC-CU--A AUGC-AUGCA A-GUC-GCAC 121 G--CA----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ----GUU-CC (--UU----- ---------- ---------- 241 --------CG -)GG-AGC-- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UG--- AGUG-GCGC- 361 -A-CG-GC-U GAGG---AAC -AC-GUGGG- A-A--CCU-G C-CCGA---C -CGUG-G-GG 421 -GAU-AA-CA C--------- ------GC-- C(-GAAA-)G -GCGG-G--C UAAUCCC-GC 481 AU-ACG---- ---------- ---------- ---------- ---CUC-(-- --------GC 541 AA-------- -)-GAG---- ---------- ----GAAA-- ---GCA---- ---------- 601 --(------- ---GUGA--- ---)------ ---------| ----UG--C- G--CGG---- 661 ----UCGG-- AGG---G-|G GCUGC----- -GG|----CC C--AUCA-G- GUC-G---UU 721 GG-CG-GG-( GU-AAC-GG) -C-CCACC-A A|-GCC-GA- UGA------- -----CG-GG 781 U-AG-C-UG| -G-UCU--(G -UGA)-GGAC ----AA-C-- CAG-C|C-AG -ACUGG-G-A 841 (CUGA-GA-C ACG)--GNCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GC-A 901 AGG-AAUUUU C-GGCAAU-- GG-GC-(GCA A)-GCC-UGA CCGA|-GCAA CGCC-GC-GU 961 N-G-AG-G-A C-GAC--G-G NC(--UU-CG --)GG-UUGU AAA--CUCC| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Hltx.orego 4376 bp RNA RNA 02-JUL-1998 DEFINITION Heliothrix oregonensis str. F1. ACCESSION No information KEYWORDS No information. SOURCE Heliothrix oregonensis str. F1. ORGANISM Heliothrix oregonensis. REFERENCE 1 AUTHORS Ward,D.M., Kopczynski,E.D., Heimbuch,B.K., Bateson,M.M. and Weller,R. TITLE Uncultivated cyanobacteria, Chloroflexus-like and Spirochete-like inhabitants of a hot spring microbial mat JOURNAL Appl. Environ. Microbiol. 58, 3964-3969 (1992) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: L04675 isolate_name= F1 BASE COUNT 198 a 222 c 307 g 144 t 3505 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... ...U-CU--A AUGC-AUGCA A-GUC-GUAC 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -GCGCCC-CC (--UU----- ---------- ---------- 241 --------UC -)GG-GGGUG A--------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|------ -GUG-GCGC- 361 -A-CG-GC-U GAGG---AAC -AC-GUGGG- U-A--CCU-A C-CCCU---G -UGUG-G-GG 421 -GAC-AA-CG C--------- ------AC-- C(-GAAA-)G -GGGG-C--C UAAUCCC-GC 481 AU-ACG---- ---------- ---------- ---------- ---CUC-(-- --------UA 541 CG-------- -)-GAG---- ---------- ----GAAA-- ---GUC---- ---------- 601 --(------- ----GCA--- ---)------ ---------| ----AG--C- G--CAC---- 661 ----GGGG-- AGG---N-|G GCCUG----- -CG|----CG C--AUCA-G- GUC-G---UU 721 GG-UG-UG-( GU-AAC-GG) -C-GCACC-A A|-GCC-GA- UGA------- -----CG-GG 781 U-CC-C-UG| -G-UCU--(G -AGA)-GGAC ----GA-C-- CAG-G|C-AG -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GC-A 901 AGG-AAUUUU C-CGCAAU-- GG-GC-(GCA A)-GCC-UGA CGGA|-GCAA CGCC-GC-GU 961 G-C-CG-G-A U-GAC--G-G UC(--UU-CG --)GA-UUGU AAA--CGGC| UUUU-GC-CU 1021 --AG-GAA-- GA-------- ---------( ------AAC- ---------) ---------- 1081 ---------- ---------- A-GA-CGGU- A-CUA-G-GC G-AA--UCAG ---------C 1141 -CCCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUG-A) U-A-C-GGAG |-GGGG-C-- 1201 AAG-CGUUGU CC-GGAGUUA -CU-GGGC|G UAAA-GCGU- GCG-UAG-GC -G|-GU-UG- 1261 C-AU-GCG|U CAC---CACU G-AAA-GC-U CC-AAG-C(- UC-A)A-CUU -GG-U-GAG- 1321 -GYGU-GGUG A-UAC-GAUG C-AGCUG-GA GGC-----AG C-CA-GAGGA AAG-C|GGAA 1381 UU-CCGGGU- GUA-GUG(-G UGAAA)-UGC -GU-AGAG-A UC-CGGAGG- AACG-CCAG- 1441 -U-G-GU(-G CA-G)ACGG- -CUUUCUG-- ---------- ---------- ---------G 1501 GGC--UG-AC CUGACG-CUG AG-G------ -------CA- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CC- -GG(AUUA-G AUAC)-CCG- ----GGUA-G UC----CAC- G-CG-GU--A 1621 AAC-G-AUGU U--CG-CU-- -------C|G -GU-GU-GCG -GC-ACG--- -G-------- 1681 -(UGC-AA)C G--------- ---------- -C-------- -------GUG -CGGCG-UGC 1741 CC--AA---- --GG-(UUA- ---C)C-CG- UUAA-GCGAA C|C|G-CCU- G-GGGACUAC 1801 GAG-C---(G CAA)---G-C UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CAGCGG-AGC G-U-GU-GGU -UUAAUU-CG -(ACA..... .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS env.OS20 4376 bp RNA RNA 02-JUL-1998 DEFINITION Octopus Spring. ACCESSION No information KEYWORDS No information. SOURCE Octopus Spring. ORGANISM Octopus Spring. REFERENCE 1 AUTHORS Weller,R., Bateson,M.M., Heimbuch,B.K., Kopczynski,E.D. and Ward,D. TITLE Uncultivated cyanobacteria, Chloroflexus-like and Spirochete-like inhabitants of a hot spring microbial mat JOURNAL Appl. Environ. Microbiol. 58, 3964-3969 (1992) STANDARD No information REFERENCE 2 AUTHORS Ward,D.M., Bateson,M.M., Weller,R. and Ruff-Roberts,A.L. TITLE Ribosomal RNA analysis of microorganisms as they occur in nature JOURNAL Adv. Microb. Ecol. 12, 219-286 (1992) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: L04703 library_source= Octopus Spring microbial mat DNA from Yellowstone NP NB: IDENT:Chloroflexus relative; perif. rel. OS_C, OS_C2, OS-4 gp BASE COUNT 199 a 209 c 306 g 145 t 3517 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... ........GG 421 -GAU-AA-CG G--------- ------GC-- C(-GAAA-)G -GUUC-G--C UAAUCNS-SS 481 AU-ACG---- ---------- ---------- ---------- --CUCC-(-- --------UG 541 CG-------- -)-GGAG--- ---------- ----GAAA-- ---GCG---- ---------- 601 --(------- ----GAG--- ---)------ --------A| NG--NG--C- A--CUC---- 661 ----GG---- AU------|G NGUGC----- -GG|----CC C--AUCA-G- GUU-G---CU 721 GG-UA-GG-( GU-AAG-G-) -C-CUACC-A G|-GCC-GA- UGA------- -----CG-GG 781 U-AC-C-UG| -G-UCU--(G -AGA)-GGAC ----GA-U-- CAG-G|C-AG -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GC-A 901 AGG-AAUUUU C-CGCAAU-- GG-AC-(ACA U)-GUC-UGA CGGA|-GCAA CGCC-GC-GU 961 G-C-AG-G-A C-GAC--G-G -C(--UU-CG --)GG-UUGU AAA--CUGC| UUUU-GG-GU 1021 --GG-GAC-- GAU------- ---------( ---------- ---------) ---------- 1081 ---------- -------G-A U-GA-CGGU- A-CCA-C-CC G-AA--UAAG ---------N 1141 -CCCGGCU-A ACUCC-GUG( CCA--GCAGC NGCGGUA-A) G-A-C-GGAG |-GGGG-N-- 1201 AAG-NGUUGU CC-GGACUCA -CU-GGGC|G UAAA-GCGU- GCG-UAG-GU -G|-GU-GC- 1261 G-AU-GCG|U --C---G-CU G-AAA-AG-S SS-CGG-C(- UU-A)A-CCG -GG-C-GAC- 1321 -GGGC-GACG A-UAC-GAUC G-CACUG-GA GGC-----AG G-GA-GANGU UGG-U|GGAA 1381 UU-CCGNNU- GUA-GUG(-G UGAAA)-UGC -GU-AGAG-A UC-CGGAGG- AAUG-CCGG- 1441 -U-G-GC(-G UA-A)GCGG- -CCAACGA-- ---------- ---------- ---------G 1501 UCC--UG-AC CUGACA-CUG AG-G------ -------CA- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CC- -GG(AUUA-G AUAC)-CCG- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGU C--GG-CU-- -------A|G -GU-GU-GUG -AU-CGGG-- ---------- 1681 -(-GU-GA)- ---------- ---------- CC-------- -------CGA -UGGCG-UGC 1741 CG--AA---- --CG-(UUA- ---C)G-CG- GUAA-GCCGA C|C|G-CCU- G-GGGACUAC 1801 GAG-C---(G CAA)---C-G UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CAGCGG-A-C G-U-GU-GGU -UUAAUU-CG -(AC--AA-C G)--CGAAGA 1921 A-CCUUA-CC CAG-GU-UUG ACA-UG|--- -------C-C ---CCUG--- -CA----AGC 1981 -GCA-C--(- GGAA-)-ACG -U--GUGA-- C--------- ---CU----- --(UC----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- G-)------- AG-------- -----G---| GUG-GG-GCA |---C|C--G 2161 GU-NC-UGCA UG|G-CUG-- UCG-UC.|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Cfx.aurant 4376 bp RNA RNA 02-JUL-1998 DEFINITION Chloroflexus aurantiacus str. J-10-fl ATCC 29366. ACCESSION No information KEYWORDS No information. SOURCE Chloroflexus aurantiacus str. J-10-fl ATCC 29366. ORGANISM Chloroflexus aurantiacus. REFERENCE 1 AUTHORS Oyaizu,H., Debrunner-Vossbrinck,B., Mandelco,L., Studier,J.A. and Woese,C.R. TITLE The green non-sulfur bacteria: A deep branching in the eubacterial line of descent JOURNAL Syst. Appl. Microbiol. 9, 47-53 (1987) STANDARD No information COMMENTS Organism information Culture collection: ATCC 29366 Sequence information (bases 1 to 4376) Corresponding GenBank entry: M34116 isolate_name= J-10-fl BASE COUNT 301 a 394 c 494 g 224 t 2963 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~ACAAUGN AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAC -GAAC-GC-- UGGC-GGC-G -UGC-CU--A AUGC-AUGCA A-GUC-GAAC 121 G--CA----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ----GCA-GG (--CG----- ---------- ---------- 241 --------UG -)CC-UGGC- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UG--- CGUG-GCGA- 361 -A-CG-GC-U GAGG---AAC -AC-GUGGG- UGA--CCU-G C-CCCG---G -AGUG-G-GG 421 -GAU-AC-CC C--------- ------GU-- C(-GAAA-)G -ACGG-G--A CAAUCCC-GC 481 AU-ACG---- ---------- ---------- ---------- ---CUC-(-- --------GA 541 CG-------- -)-GAG---- ---------- ----GAAA-- ---GCC---- ---------- 601 --(------- ----GAA--- ---)------ ---------| ----GG--C- G--CUC---- 661 ----UGNN-- AGG---G-|G CCNGC----- -GG|----CC C--AUCA-G- GUA-G---UU 721 GG-UG-UG-( GU-AAC-GG) -C-GCACC-A A|-GCC-AA- UGA------- -----CG-GG 781 U-AC-C-CG| -G-UCU--(G -AGA)-GGAC ----GA-C-- CGG-G|C-AG -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GC-A 901 AGG-AAUUUU C-CCCAAU-- GG-GC-(GCA A)-GCC-UGA GGGA|-GCAA CGCC-GC-GU 961 G-G-AG-G-A C-GAC--G-G CC(--UU-CG --)GG-UUGU AAA--CUCC| UUUC-GG-GU 1021 --GG-GAC-- GA-------- ---------( ------UGC- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CCA-C-CA G-AA--GCAG ---------C 1141 -CCCGGCU-A ACUCU-GUG( CCA--GCAGC CGCGGUA-A) G-A-C-AGAG |-GGGG-C-- 1201 NAG-CGUUGU CC-GGAGUUA -CU-GGGC|G UAAA-GGGC- GCG-CAG-GC -G|-GU-GG- 1261 G-CU-GCG|U CGG---CGCU G-AAA-GC-G CC-CCG-C(- UU-A)A-CGG -GG-C-GAG- 1321 -GCGC-GCCG A-UAC-GAGU C-CACUC-GA GGC-----AA G-CA-GAGGG UGG-C|GGAA 1381 UU-CCGGGU- GGA-GCG(-G UGAAA)-UGC -GU-AGAG-A UC-CGGAGG- AACG-CCAG- 1441 -U-G-GG(-G AA-G)CCGG- -CCACCUG-- ---------- ---------- ---------G 1501 GCU--UG-AC CUGACG-CUG AG-G------ -------CG- C-GACA-GC- GU-GGG-GA- 1561 GC-AAA-CC- -GG(AUUA-G AUAC)-CCG- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGC C--GG-CU-- -------C|G -GC-GU-CUG -GC-GCAC-- ---------- 1681 -(-GU-UG)- ---------- ---------- GU-------- -------GUG -CUGGG-UGC 1741 CU--UA---- --GC-(UCA- ---C)G-CG- GUAA-GCCGG C|C|G-CCU- G-GGGA.... 1801 ........(. ...).....C UU-AAAACUC -AAA-GGAAU UG........ .........G 1861 C-A--CA-AG .......... ........GU -UUAAUU-CG -(ACGCAA-C A)--CGAAGA 1921 A-CCUUA-CC CGG-AC-UUG ACA-UG|--- -------G-C ---GCUG--- -CA----UCC 1981 -CCU-G--(- GAAA-)-CAG -G-GNCG--- C--------- ---CU----- --(GN----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- AG-------- -----G---| CNG-CA-CCA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUCA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-GU-G |-UC--GGU- 2281 AG--UUA--- ---C------ ---------- ---------- ----(---AG ---GU---)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -------G|- 2701 ------U-C- U-ACC-GA-G A-CU-G-CCG --NU(-G--A CC)-GGC-G- -GAGG-A-AG 2761 G-CG-CGG-A UG-ACG--UC -A-AGUC-AG CAU-G-GC-C CUUAC-G-UC -CG--GGGC- 2821 G-ACA-CA-C ACG--CUACA AUGGC-C-AC -GA--CAAUG CGU-U-G-C- CA-AGC-C(G 2881 -CAA)GGUG- ---------- GA-GCUAA-U CGCCU-AAAC -GU-G-GUC- UCAGUGCAGA 2941 N-UCGGGGC- (UGCAAC-U- C)-GCCCCCG -UGAAGG-CG -GAGU-UGC- -UAGUA-ACC 3001 GC-GUA-(UC -AGCCAU)-G GCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACG--- --UCA-UGGG A--GU-GGC- CA-AU-GCUU -GAA-G-UCC 3121 G-UGU-G-CU -AA-CCCC-- ---------- ---------- -----(---- -AGUC----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------G GGGAGG-C-A G-CG-GC-CG A-GGGC-AGG GGC-CG-CG- AC........ 3301 .......... GUAA-CAAG. ......GUAC C(GGA-A)G. .......... GAUCACCUCC 3361 UUUC|UA~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Cfx.aur400 4376 bp RNA RNA 02-JUL-1998 DEFINITION Chloroflexus aurantiacus str. Y400-fl. ACCESSION No information KEYWORDS No information. SOURCE Chloroflexus aurantiacus str. Y400-fl. ORGANISM Chloroflexus aurantiacus. REFERENCE 1 AUTHORS Weller,R., Bateson,M.M., Heimbuch,B.K., Kopczynski,E.D. and Ward,D. TITLE Uncultivated cyanobacteria, Chloroflexus-like and Spirochete-like inhabitants of a hot spring microbial mat JOURNAL Appl. Environ. Microbiol. 58, 3964-3969 (1992) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: L05510 (bases 1 to 230) isolate_name= Y400-fl BASE COUNT 153 a 195 c 236 g 106 t 3686 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(.GAAA-)G -ACNN-N--H CAAUCCC-NC 481 AU-ACG---- ---------- ---------- ---------- ---CUC-(-- --------GA 541 CN-------- -)-NAG---- ---------- ----GAAA-- ---GCG---- ---------- 601 --(------- ----HHA--- ---)------ ---------| ----GG--C- G--CUC---- 661 ----UNNN-- --------|- NCNNC----- -GG|----CC C--AUNA-G- GUH-G---UU 721 NG-UG-UG-( GU-AAC-GG) -C-GCACN-N A|-GCC-AA- UGA------- -----HG-GG 781 U-AC-C-CN| -G-UCU--(G -AGA)-GGAH ----GA-C-- CGG-G|C-AG -ACUGG-G-A 841 (CUGA-GA-C WCG)--GCCN -NGN-C-UCN -(NNCG)--G GAG-GC-AG- C-A---GC-A 901 AGG-AAUUUU C-CCCAAU-- GG-GC-(GCA A)-GCC-UGA GGGA|-GCAA CGCC-GN-GU 961 G-G-AG-G-A C-GAC--G-G CN(--NN-CG --)GG-UUGN NAA--C...| .....GG-GU 1021 --GG-GAC-- GA-------- ---------( ------UGC- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CCA-C-CA G-AA--GCNG ---------C 1141 -CCCGG.... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 ......CCCN A-UAC-GAGU C-HACUH-NA KGC-----WW G-CA-NHGGG UNG-C|DKWA 1381 UU-CCGGGU- GUA-UCG(-G UNAAA)-UGC -GU-AGAG-A UC-CGGAGG- AAYN-CCNG- 1441 -U-G-GG(-G AA-G)CCGG- -CCWCCUG-- ---------- ---------- ---------G 1501 GCU--UN-AC CUNACN-CUN CN-N------ -------CG- C-GACA-NN- NN-GGG-GA- 1561 CG-AAA-CC- -GG(AUUA-G AUAC)-CCG- ----GGUA-G UC----CAC- G-CC-GU--N 1621 AAC-G-AUGC C--GG-NN-- -------H|G -GC-GU-CUG -GC-GCAC-- ---------- 1681 -(-GU-UG)- ---------- ---------- GU-------- -------GUG -CUGGG-UGC 1741 CU--UA---- --GC-(UCN- ---N)G-CG- GUNA-GCCGG N|N|G-CCN- G-GGGACUAC 1801 GAG-C---(G CAA)---G-C UG-UCUACCG -ANA-CU... .......... .......... 1861 .........G GAUGAC-GUC AAG-UC-AGC .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .AU-G-GC-C CUUAH-G-UH -HH--GGGC- 2821 G-ACA-CA-C ACG--CUACA AUGGC-C-AC -GA--CAAUG CGU-U-G-C- CA-AGC-C(G 2881 -CAA)GGUG- ---------- GA-ACUAA-U CGCCU-NAAC -GU-N-GHC- UCANUGCANA 2941 U-HGGGGGC- (UGCAAC-U- C)-GCCCCCG -UGAAGG-CG -GAGU-UGC- -UAGUA-ACC 3001 GC-GUA-(UC -AGCCAU)-G GCG-CGGNN- AAUAC-G... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Cfx.auran2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Chloroflexus aurantiacus str. J-10-fl (T). ACCESSION No information KEYWORDS No information. SOURCE Chloroflexus aurantiacus str. J-10-fl (T). ORGANISM Chloroflexus aurantiacus. REFERENCE 1 AUTHORS Hanada,S., Hiraishi,A., Shimada,K. and Matsuura,K. TITLE Chloroflexus aggregans sp. nov., a filamentous phototrophic bacterium which forms dense cell aggregates by active gliding movement JOURNAL Int. J. Syst. Bacteriol. 45, 676-681 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: D38365|g550527 isolate_name= J-10-fl (T) BASE COUNT 292 a 382 c 496 g 216 t 2990 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......GAC -GAAC-GC-- UGGC-GGC-G -UGC-CU--A AUGC-AUGCA A-GUC-GAAC 121 R--CA----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ----ACA-GG (--CG----- ---------- ---------- 241 --------UG -)CC-UGGC- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UG--- CGUG-GCGA- 361 -A-CG-GC-U GAGG---AAC -AC-GUGGG- UGA--CCU-G C-CCCG---G -AGUG-G-GG 421 -GAU-AC-CC C--------- ------GU-- C(-GAAA-)G -ACGG-G--A CAAUCCC-NC 481 AU-ACG---- ---------- ---------- ---------- ---CUC-(-- --------GA 541 CG-------- -)-GAG---- ---------- ----GAAA-- ---GCC---- ---------- 601 --(------- ----GCA--- ---)------ ---------| ----GG--C- G--CUC---- 661 ----NGGG-- GAG---G-|- --UGC----- -GG|----CC C--AUCA-G- GUA-G---UU 721 GG-UG-UG-( GU-AAC-GG) -C-GCACC-A A|-GCC-AA- UGA------- -----CG-GG 781 U-AC-C-CG| -G-UCU--(G -AGA)-GGAC ----GA-C-- CGG-G|C-AG -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UGC -(UACG)--G GAG-GC-AG- C-A---GC-A 901 AGG-RAAUUU N-CCCAAU-- GG-GC-(GCA A)-GCC-UGA GGGA|-GCAA CGCC-GC-GU 961 G-G-AG-G-A C-GAC--G-G CC(--CU-A- --)GG-UUGU AAA--CKCC| UUUC-AG-GU 1021 --GG-GAC-- GA-------- ---------( ------UGC- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CCA-C-CA G-AA--GCAG ---------C 1141 -CCCGGCU-A ACUCU-GUG( CCA--GCAGC CGCGGUA-A) G-A-C-AGAG |-GGGG-C-- 1201 AAG-CGUUGU CC-GGAGUUA -CU-GGGC|G UAAA-GGGC- GCG-CAG-GC -G|-GU-GG- 1261 G-CU-GCG|U CGG---CGCU G-AAA-GC-G CC-UCG-C(- UU-A)A-CGG -GG-C-GAG- 1321 -GCGC-GCCG A-UAC-GAGU C-CACUC-GA GGC-----AA G-CA-GAGGG UGG-C|GGAA 1381 UU-UCGGGU- GGA-GCG(-G UGAAA)-UGC -GU-AGAG-A UU-CGGAGG- AACG-CCGG- 1441 -U-G-GG(-G AA-G)CCGG- -CCACCUG-- ---------- ---------- ---------G 1501 GCU--UU-AC CUGACG-CUG CG-G------ -------CG- C-GACA-GC- GU-GGG-GA- 1561 GC-AAA-CC- -GG(AUUA-G AUAC)-CCG- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGC C--GG-CU-- -------C|G -GC-GU-CUG -GC-GCAC-- ---------- 1681 -(-GU-UG)- ---------- ---------- GU-------- -------GUG -CUGGG-UGC 1741 CU--UA---- --NC-(UNA- ---C)G-CG- GUAA-GCCGG C|C|G-CCU- G-GGGACUAC 1801 GAG-C---(G CAA)---G-C UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CAGCGG-AGC G-U-GU-GGU -UUAAUU-CG -(ACGCAA-C A)--CGAAGA 1921 A-CCUUA-CC CGG-AC-UUN ACA-UG|--- -------G-U ---GCUG--- -CA----UCC 1981 -CCU-G--(- GAAA-)-CAG -G-GGCG--- C--------- ---CU----- --(GN----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- AG-------- -----G---| C-G-CA-CCA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-C---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUNA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-GU-G |-UC--GGU- 2281 AG--UUA--- ---C------ ---------- ---------- ----(---AG ---GU---)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -------G|- 2701 ------U-C- U-ACC-GA-G A-CU-G-CCC --GU(-G--A CC)-GGC-G- -GAGG-A-AG 2761 G-CG-CGG-A UG-ACG--UC -A-AGUC-AG CAU-G-GC-C CUUAC-G-UC -CG--GGGC- 2821 G-ACA-CA-C ANG--CUANA AUGGC-C-AC -GA--CAAUG CGU-U-G-C- CA-AGC-C(G 2881 -CAA)GGUG- ---------- GA-GCUAA-U CUCCU-AAAC -GU-G-GUC- UNAGUGCAGA 2941 U-CGGGGGC- (UGCAAC-U- N)-GCCCCCG -UGAAGG-CG -GAGU-UGC- -UAGUA-ACC 3001 GC-GUA-(UC -AGCCAU)-G GCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACG--- --UCA-UGGG A--GU-GGC- CA-AU-GCUU -GAA-G-UCC 3121 G-UGU-G-CU -AA-CCCC-- ---------- ---------- -----(---- -AGUC----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------G GGGAGG-C-A G-CG-GC-CG U-GGGC-AGG GGC-CG-CG- ACUGGGGA-C 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Cfx.aggreg 4376 bp RNA RNA 02-JUL-1998 DEFINITION Chloroflexus aggregans str. MD-66 DSM 9485 (T). ACCESSION No information KEYWORDS No information. SOURCE Chloroflexus aggregans str. MD-66 DSM 9485 (T). ORGANISM Chloroflexus aggregans. REFERENCE 1 AUTHORS Hanada,S., Hiraishi,A., Shimada,K. and Matsuura,K. TITLE Chloroflexus aggregans sp. nov., a filamentous phototrophic bacterium which forms dense cell aggregates by active gliding movement JOURNAL Int. J. Syst. Bacteriol. 45, 676-681 (1995) STANDARD No information COMMENTS Organism information Culture collection: DSM 9485 (T) Sequence information (bases 1 to 4376) Corresponding GenBank entry: D32255|g514973 Former RDP Sids: Ccr.aggreg isolate_name= MD-66 NB: 229-234r does not match phylogenetic group characteristics BASE COUNT 284 a 387 c 488 g 209 t 3008 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......C-- UGGC-GGC-G -UGC-MU--A AUGC-AUGCA M-GUM-GAAC 121 G--CA----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---GCAG-NN (--NG----- ---------- ---------- 241 --------UG -)CC-UGGC- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UG--- CGUG-GCGA- 361 -A-CG-GC-U GAGG---AAC -AC-GUGGG- UGA--CCU-A C-CCCG---G -AGUG-G-GG 421 -GAU-AC-CC C--------- ------GU-- C(-GAAA-)G -ACGG-G--A CAAUCCC-NC 481 AU-ACG---- ---------- ---------- ---------- ---CCU-(-- --------AA 541 CG-------- -)-GAG---- ---------- ----GAAA-- ---GCC---- ---------- 601 --(------- ----AAC--- ---)------ ---------| ----GG--C- G--CUC---- 661 ----CGGG-- -GA---A-|C GU--C----- -GG|----CC C--AACA-G- GUA-G---UU 721 GU-UG-UG-( GU-AAC-GG) -C-GCACC-A A|-ACC-AA- UUG------- -----MG-GG 781 U-AC-C-CG| -G-UCU--(G -AGA)-GGAC ----GG-C-- CGG-G|C-AG -ACUGG-G-A 841 (CUGC-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GC-A 901 AGG-AAUUUU N-CCCAAU-- GG-GC-(ACA C)-GCC-UGA GGGA|-GCAA CGCC-GC-GU 961 G-G-AG-G-A C-GAC--G-G CU(--NN--G --)GG-UUGU AAA--CUCC| UUUN-GG-GU 1021 --GG-GAC-- GA-------- ---------( ------GAC- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CCA-C-SA G-AA--GCAG ---------C 1141 -CCCGGCU-A ACUCU-GUG( CCA--GCAGC CGCGGUA-A) G-A-C-AGAG |-GGGG-C-- 1201 AAG-CGUUGA CC-GGAGUUA -CU-GGGC|G UAAA-GGGC- GCG-GAG-GC -G|-GU-CU- 1261 G-CU-GCG|U CGG---CGCU G-AAA-GC-G CC-CCG-C(- UU-A)A-CGG -GG-C-GAG- 1321 -GCGC-GCCG A-UAC-GAGC A-GGCUG-GA GGC-----GA G-CA-GAGGG UGG-U|GGAA 1381 UU-UUGGGU- GGA-GCG(-G UGAAA)-UGC -GU-AGAU-A UC-NGGAGG- AACG-CCGG- 1441 -U-G-GA(-G CA-G)UCGG- -CCACCUG-- ---------- ---------- ---------G 1501 GCU--BU-GC CUGACG-CUG CG-G------ -------CG- C-GACC-GC- GU-GGG-GA- 1561 GC-AAA-CC- -GG(AUUA-G AUAC)-CCG- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGC C--GG-CU-- -------C|A -GC-GU-UUG -GC-GCNC-- ---------- 1681 -(-GU-GA)- ---------- ---------- CC-------- -------GUG -CUGGG-UGC 1741 CU--UA---- --GC-(UNA- ---C)G-CG- GUAA-GCCGG C|C|G-CCU- G-GGGACUAC 1801 GAC-C---(G CAA)---G-C UU-NAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CAGCGG-AGC G-U-GU-GGU -NVAAUU-CG -(ACGCAA-C C)--CGAAGA 1921 A-CCUUA-CC CGG-GC-UUR ACA-UG|--- -------A-C ---GCUG--- -CA----GGC 1981 -GCG-G--(- GAAA-)-CCG -C-GCGG--- C--------- ---CC----- --(CN----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------U A-)------- GG-------- -----G---| -UG-CG-UUA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-C---CU-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUNA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-GC-G |-NC--GGU- 2281 AG--UUA--- ---C------ ---------- ---------- ----(---AG ---GU---)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -------G|- 2701 ------U-C- U-ACC-GA-G A-CU-G-CCC --CG(-AG-A CC)-GGC-G- -GAGG-A-AG 2761 G-CG-CGG-A UG-ACG--UC -A-AGUC-AG CAU-G-GC-C CUGAC-G-UC -CG--GGGC- 2821 G-ACA-CA-C ACG--CUACA AUGGC-C-AC -GA--CAAUG CGU-U-G-C- AC-ACC-C(G 2881 -CAA)GGCG- ---------- GC-GCUAA-U CUCC--AAAC -GU-G-GUC- UNAGUGCAGA 2941 U-CGGGGGC- (UGCAAC-U- N)-GCCCCCG -UGAAGG-CG -GAGU-UGC- -UAGUA-ACC 3001 GC-GUC-(UC -AGCCAU)-G GCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACG--- --UCA-UGGG A--GU-GGC- UA-AU-GCUU -GAA-G-UCC 3121 G-UGU-G-CU -AA-CCCC-- ---------- ---------- -----(---- -CCAC----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------G GGGAGG-C-A G-CG-GC-CG W-GGGC-AGG AGC-CGGCG- ACCUGGGA-C 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS 2.4.2-DEIN 4376 bp RNA RNA 09-JAN-1999 DEFINITION 2.4.2 DEINOCOCCUS-THERMUS_SUBDIVISION. ACCESSION No information KEYWORDS No information. SOURCE 2.4.2 DEINOCOCCUS-THERMUS_SUBDIVISION. ORGANISM 2.4.2 DEINOCOCCUS-THERMUS_SUBDIVISION. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 0 a 0 c 0 g 0 t 4376 others ORIGIN 1 x~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~-- ------~~~~ 541 ~~~~~~---- -~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~---~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- 1681 -(~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- -------~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~----~~~ 1981 ~~~~-~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~--- --~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~------ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~---~~ ---~~~--~~ 2341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- 3181 ---------- ---------- ---------- ------~)~~ ~~~~~~~~~~ ~~~~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS 2.4.2.1-TH 4376 bp RNA RNA 09-JAN-1999 DEFINITION 2.4.2.1 THERMUS_GROUP. ACCESSION No information KEYWORDS No information. SOURCE 2.4.2.1 THERMUS_GROUP. ORGANISM 2.4.2.1 THERMUS_GROUP. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 0 a 0 c 0 g 0 t 4376 others ORIGIN 1 x~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~-- ------~~~~ 541 ~~~~~~---- -~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~---~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- 1681 -(~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- -------~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~----~~~ 1981 ~~~~-~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~--- --~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~------ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~---~~ ---~~~--~~ 2341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- 3181 ---------- ---------- ---------- ------~)~~ ~~~~~~~~~~ ~~~~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS 2.4.2.1.1 4376 bp RNA RNA 09-JAN-1999 DEFINITION 2.4.2.1.1 T.AQUATICUS_SUBGROUP. ACCESSION No information KEYWORDS No information. SOURCE 2.4.2.1.1 T.AQUATICUS_SUBGROUP. ORGANISM 2.4.2.1.1 T.AQUATICUS_SUBGROUP. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 0 a 0 c 0 g 0 t 4376 others ORIGIN 1 x~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~-- ------~~~~ 541 ~~~~~~---- -~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~---~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- 1681 -(~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- -------~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~----~~~ 1981 ~~~~-~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~--- --~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~------ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~---~~ ---~~~--~~ 2341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- 3181 ---------- ---------- ---------- ------~)~~ ~~~~~~~~~~ ~~~~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS T.spZHGI 4376 bp RNA RNA 02-JUL-1998 DEFINITION Thermus sp. str. ZHGI A.1. ACCESSION No information KEYWORDS No information. SOURCE Thermus sp. str. ZHGI A.1. ORGANISM Thermus sp. REFERENCE 1 AUTHORS Saul,D.J., Rodrigo,A.G., Reeves,R.A., Williams,L.C., Borges,K .M., Morgan,H.W. and Bergquist,P.L. TITLE Phylogeny of twenty Thermus isolates constructed from 16S rRNA gene sequence data JOURNAL Int. J. Syst. Bacteriol. 43, 754-760 (1993) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: L09664 isolate_name= ZHGI A.1 BASE COUNT 308 a 392 c 539 g 235 t 2902 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 GCUCAG-GGU -GAAC-GC-- UGGC-GGC-G -UGC-CU--A AGAC-AUGCA A-GUC-GGGC 121 G--GG----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- CCAUGGG-GU (--UU----- ---------- ---------- 241 --------U- -)AC-UCCGU GG-------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UC--- AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAC -GC-GUGGG- UGA--CCU-A C-CCGG---A -AGUG-U-GG 421 -GAC-AA-CC C--------- ------GG-- G(-GAAA-)C -UCGG-G--C UAAUCCC-GC 481 AU-GUG---- ---------- -------G-U CA-U--G--- ---UCC-(-- --------UG 541 UG-------- -)-GGG---- -C-AU----G AU--UAAA-- ---GGGC--- ---------- 601 --(------- ---GAGA--- ---)------ ---------| ---GUC--C- G--CUU---- 661 ----CCGG-- AUG---G-|G CCCGC----- -GU|----CC C--AUCA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAA-GG) -C-CCACC-A A|-GGC-GA- CGA------- -----CG-GG 781 U-AG-C-CG| -G-UCU--(G -AGA)-GGAU ----GG-C-- CGG-C|C-AC -AGGGG-C-A 841 (CUGA-GA-C ACG)--GGCC -CCA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-U 901 AGG-AAUCUU C-CGCAAU-- GG-GC-(GCA A)-GCC-UGA CGGA|-GCGA CGCC-GC-UU 961 G-G-AG-G-A G-GAA--G-C CC(--UU-CG --)GG-GUGU AAA--CUCC| UGAA--C-UG 1021 --GG-GAC-- GA-AAGC-CC --C------( -----GAUGA ---------) ------G-GG 1081 ---------- -------GGA U-GA-CGGU- A-CCC-A-GG U-AA--U-AG ---------C 1141 -GCCGGCC-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGCG-C-- 1201 GAG-CGUUAC CC-GGAUUUA -CU-GGGC|G UAAA-GGGC- GUG-UAG-GC -G|-GC-UU- 1261 G-GG-GCG|U CCC---AUGU G-AAA-GA-C CA-CGG-C(- UC-A)A-CCG -UG-G-GGG- 1321 -AGCG-UGGG A-UAC-GCUC A-GGCUA-GA CGG-----CG G-GA-GGGGG UGG-U|GGAA 1381 UU-CCCGGA- GUA-GCG(-G UGAAA)-UGC -GC-AGAU-A CC-GGGAGG- AACG-CCGA- 1441 -U-A-GC(-G AA-G)GCAG- -CCACCUG-- ---------- ---------- ---------G 1501 CUC--GU-UC GUGACG-CUG AG-G------ -------CG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CC- -GG(AUUA-G AUAC)-CCG- ----GGUA-G UC----CAC- G-CC-CU--A 1621 AAC-G-AUGC G--CG-CU-- -------A|G -GU-CU-CUG -GG------- ---------- 1681 -(-UU-U-)- ---------- ---------- ---------- ---------U -CUGGG-GGC 1741 CG--AA---- --GC-(CAA- ---C)G-CG- UUAA-GCGCG C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AGG-CC-UUG ACA-UG|--- -------C-U ---AGGG--- -AA----CCU 1981 -GCC-U--(- GAAA-)-GGG -U-GGGG--- UG-------- -CCCC----- --(GC----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------G A-)------- GGGG------ ----AG---| CCC-UA-GCA |---C|A--G 2161 GU-GC-UGCA UG|G-CCG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-CU-G |-CC--GUU- 2281 AG--UUGC-C AG-CGG---- ---------- ---------- ---G(---UU ---AAG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CCG|G 2701 G-CA-CU-C- U-AAC-GG-G A-CU-G-CCU --GC(-G--A AA)-GCA-G- -GAGG-A-AG 2761 G-CG-GGG-A CG-ACG--UC -U-GGUC-AU CAU-G-GC-C CUUAC-G-GC -CU--GGGC- 2821 G-ACA-CA-C GUG--CUACA AUGCC-C-AC -UA--CAGAG CGA-G-G-C- GA-CCU-G(G 2881 -CGA)CAGG- ---------- GA-GCGAA-U CGCGG-AAAG -GU-G-GGC- GUAGUUCGGA 2941 U-UGGGGUC- (UGCAAC-C- C)-GACCCCA -UGAAGC-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGCCAU)-G CCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACG--- --CCA-UGGG A--GC-GGG- UU-CU-ACCC -GAA-G-UCG 3121 C-CGG-G--- -AG-CC---- ---------- ---------- -----(---- -UUAG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GG----C-A G-GC-GC-CG A-GGGU-AGG GCC-CG-UG- ACU-GGGG-C 3301 G---AAGUC- GUAA-CAAGG UAGCU-GUAC C(G....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS T.spYS38 4376 bp RNA RNA 02-JUL-1998 DEFINITION Thermus sp. str. YS38. ACCESSION No information KEYWORDS No information. SOURCE Thermus sp. str. YS38. ORGANISM Thermus sp. REFERENCE 1 AUTHORS Embley,T.M., Thomas,R. and Williams,R. TITLE Reduced thermophilic bias in the 16S rDNA sequence from Thermus ruber provides further support for a relationship between Thermus and Deinococcus JOURNAL Syst. Appl. Microbiol. 16, 25-29 (1993) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: Z15062 isolate_name= YS38 BASE COUNT 306 a 387 c 532 g 233 t 2918 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......C-G -UGC-CU--A AGAC-AUGCA A-GUC-GGGC 121 G--GG----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- CCAUGGG-GU (--UU----- ---------- ---------- 241 --------U- -)AC-UCCGU GG-------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UC--- AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAC -GC-GUGGG- UGA--CCU-A C-CCGG---A -AGUG-U-GG 421 -GAC-AA-CC C--------- ------GG-- G(-GAAA-)C -UCGG-G--C UAAUCCC-GC 481 AU-GUG---- ---------- -------G-U CA-U--G--- ---UCC-(-- --------UG 541 UG-------- -)-GGG---- -C-AU----G AU--UAAA-- ---GGGC--- ---------- 601 --(------- ---GAGA--- ---)------ ---------| ---GUC--C- G--CUU---- 661 ----CCGG-- AUG---G-|G CCCGC----- -GU|----CC C--AUCA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAA-GG) -C-CCACC-A A|-GGC-GA- CGA------- -----CG-GG 781 U-AG-C-CG| -G-UCU--(G -AGA)-GGAU ----GG-C-- CGG-C|C-AC -AGGGG-C-A 841 (CUGA-GA-C ACG)--GGCC -CCA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-U 901 AGG-AAUCUU C-CGCAAU-- GG-GC-(GCA A)-GCC-UGA CGGA|-GCGA CGCC-GC-UU 961 G-G-AG-G-A G-GAA--G-C CC(--UU-CG --)GG-GUGU AAA--CUCC| UGAA--C-UG 1021 --GG-GAC-- GA-AAGC-CC --C------( -----GAUGA ---------) ------G-GG 1081 ---------- -------GGA U-GA-CGGU- A-CCC-A-GG U-AA--U-AG ---------C 1141 -GCCGGCC-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGCG-C-- 1201 GAG-CGUUAC CC-GGAUUUA -CU-GGGC|G UAAA-GGGC- GUG-UAG-GC -G|-GC-UU- 1261 G-GG-GCG|U CCC---AUGU G-AAA-GA-C CA-CGG-C(- UC-A)A-CCG -UG-G-GGG- 1321 -AGCG-UGGG A-UAC-GCUC A-GGCUA-GA CGG-----CG G-GA-GGGGG UGG-U|GGAA 1381 UU-CCCGGA- GUA-GCG(-G UGAAA)-UGC -GC-AGAU-A CC-GGGAGG- AACG-CCGA- 1441 -U-A-GC(-G AA-G)GCAG- -CCACCUG-- ---------- ---------- ---------G 1501 CUC--GU-UC GUGACG-CUG AG-G------ -------CG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CC- -GG(AUUA-G AUAC)-CCG- ----GGUA-G UC----CAC- G-CC-CU--A 1621 AAC-G-AUGC G--CG-CU-- -------A|G -GU-CU-CUG -GG------- ---------- 1681 -(-UU-U-)- ---------- ---------- ---------- ---------U -CUGGG-GGC 1741 CG--AA---- --GC-(CAA- ---C)G-CG- UUAA-GCGCG C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AGG-CC-UUG ACA-UG|--- -------C-U ---AGGG--- -AA----CCU 1981 -GCC-U--(- GAAA-)-GGG -U-GRGG--- UG-------- -CCCC----- --(GC----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------G A-)------- GGGG------ ----AG---| CCC-UA-GCA |---C|A--G 2161 GU-GC-UGCA UG|G-CCG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-CU-G |-CC--GUU- 2281 AG--UUGC-C AG-CGG---- ---------- ---------- ---G(---UU ---AAG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CCG|G 2701 G-CA-CU-C- U-AAC-GG-G A-CU-G-CCU --GC(-G--A AA)-GCA-G- -GAGG-A-AG 2761 G-CG-GGG-A CG-ACG--UC -U-GGUC-AU CAU-G-GC-C CUUAC-G-GC -CU--GGGC- 2821 G-ACA-CA-C GUG--CUACA AUGCC-C-AC -UA--CAGAG CGA-G-G-C- GA-CCU-G(G 2881 -CGA)CAGG- ---------- GA-GCGAA-U CGCGG-AAAG -GU-G-GGC- GUAGUUCGGA 2941 U-UGGGGUC- (UGCAAC-C- C)-GACCCCA -UGAAGC-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGCCAU)-G CCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACG--- --CCA-UGGG A--GC-GGG- UU-CU-NNCC -GAA-G-UCG 3121 C-CGG-G--- -AG-CC---- ---------- ---------- -----(---- -UUAG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GG----C-A G-GC-GC-CG A-GGGU-AGG GCC-CG-UG- ACU-GGGG-C 3301 G---AAGUC- GUAA-CAAGG UAGCU-GUAC C(GGA-A)GG UGC....... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS T.spZHGIB 4376 bp RNA RNA 02-JUL-1998 DEFINITION Thermus sp. str. ZHGIB A.4. ACCESSION No information KEYWORDS No information. SOURCE Thermus sp. str. ZHGIB A.4. ORGANISM Thermus sp. REFERENCE 1 AUTHORS Saul,D.J., Rodrigo,A.G., Reeves,R.A., Williams,L.C., Borges,K .M., Morgan,H.W. and Bergquist,P.L. TITLE Phylogeny of twenty Thermus isolates constructed from 16S rRNA gene sequence data JOURNAL Int. J. Syst. Bacteriol. 43, 754-760 (1993) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: L10071|g452148 isolate_name= ZHGIB A.4 BASE COUNT 307 a 391 c 540 g 235 t 2903 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 GCUCAG-GGU -GAAC-GC-- UGGC-GGC-G -UGC-CU--A AGAC-AUGCA A-GUC-GGGC 121 G--GG----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- CCAUGGG-GU (--UU----- ---------- ---------- 241 --------U- -)AC-UCCGU GG-------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UC--- AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAC -GC-GUGGG- UGA--CCU-A C-CCGG---A -AGUG-U-GG 421 -GAC-AA-CC C--------- ------GG-- G(-GAAA-)C -UCGG-G--C UAAUCCC-GC 481 AU-GUG---- ---------- -------G-U CA-U--G--- ---UCC-(-- --------UG 541 UG-------- -)-GGG---- -C-AU----G AU--UAAA-- ---GGGC--- ---------- 601 --(------- ---GAGA--- ---)------ ---------| ---GUC--C- G--CUU---- 661 ----CCGG-- AUG---G-|G CCCGC----- -GU|----CC C--AUCA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAA-GG) -C-CCACC-A A|-GGC-GA- CGA------- -----CG-GG 781 U-AG-C-CG| -G-UCU--(G -AGA)-GGAU ----GG-C-- CGG-C|C-AC -AGGGG-C-A 841 (CUGA-GA-C ACG)--GGCC -CCA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-U 901 AGG-AAUCUU C-CGCAAU-- GG-GC-(GCA A)-GCC-UGA CGGA|-GCGA CGCC-GC-UU 961 G-G-AG-G-A G-GAA--G-C CC(--UU-CG --)GG-GUGU AAA--CUCC| UGAA--C-UG 1021 --GG-GAC-- GA-AAGC-CC --C------( -----GAUGA ---------) ------G-GG 1081 ---------- -------GGA U-GA-CGGU- A-CCC-A-GG U-AA--U-AG ---------C 1141 -GCCGGCC-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGCG-C-- 1201 GAG-CGUUAC CC-GGAUUUA -CU-GGGC|G UAAA-GGGC- GUG-UAG-GC -G|-GC-UU- 1261 G-GG-GCG|U CCC---AUGU G-AAA-GA-C CA-CGG-C(- UC-A)A-CCG -UG-G-GGG- 1321 -AGCG-UGGG A-UAC-GCUC A-GGCUA-GA CGG-----CG G-GA-GGGGG UGG-U|GGAA 1381 UU-CCCGGA- GUA-GCG(-G UGAAA)-UGC -GC-AGAU-A CC-GGGAGG- AACG-CCGA- 1441 -U-A-GC(-G AA-G)GCAG- -CCACCUG-- ---------- ---------- ---------G 1501 CUC--GU-UC GUGACG-CUG AG-G------ -------CG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CC- -GG(AUUA-G AUAC)-CCG- ----GGUA-G UC----CAC- G-CC-CU--A 1621 AAC-G-AUGC G--CG-CU-- -------A|G -GU-CU-CUG -GG------- ---------- 1681 -(-UU-U-)- ---------- ---------- ---------- ---------U -CUGGG-GGC 1741 CG--AA---- --GC-(CAA- ---C)G-CG- UUAA-GCGCG C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AGG-CC-UUG ACA-UG|--- -------C-U ---AGGG--- -AA----CCU 1981 -GCC-U--(- GAAA-)-GGG -U-GGGG--- UG-------- -CCCC----- --(GC----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------G A-)------- GGGG------ ----AG---| CCC-UA-GYA |---C|A--G 2161 GU-GC-UGCA UG|G-CCG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-CU-G |-CC--GUU- 2281 AG--UUGC-C AG-CGG---- ---------- ---------- ---G(---UU ---AAG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CCG|G 2701 G-CA-CU-C- U-AAC-GG-G A-CU-G-CCU --GC(-G--A AA)-GCA-G- -GAGG-A-AG 2761 G-CG-GGG-A CG-ACG--UC -U-GGUC-AU CAU-G-GC-C CUUAC-G-GC -CU--GGGC- 2821 G-ACA-CA-C GUG--CUACA AUGCC-C-AC -UA--CAGAG CGA-G-G-C- GA-CCU-G(G 2881 -CGA)CAGG- ---------- GA-GCGAA-U CGCGG-AAGG -GU-G-GGC- GUAGUUCGGA 2941 U-UGGGGUC- (UGCAAC-C- C)-GACCCCA -UGAAGC-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGCCAU)-G CCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACG--- --CCA-UGGG A--GC-GGG- UU-CU-ACCC -GAA-G-UCG 3121 C-CGG-G--- -AG-CC---- ---------- ---------- -----(---- -UUAG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GG----C-A G-GC-GC-CG A-GGGU-AGG GCC-CG-UG- ACU-GGGG-C 3301 G---AAGUC- GUAA-CAAGG UAGCU-GUAC C(G....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS T.sp_ac1 4376 bp RNA RNA 02-JUL-1998 DEFINITION Thermus sp. str. ac-1. ACCESSION No information KEYWORDS No information. SOURCE Thermus sp. str. ac-1. ORGANISM Thermus sp. REFERENCE 1 AUTHORS Nold,S.C. and Ward,D.M. TITLE Diverse thermus species inhabit a single hot spring microbial mat JOURNAL Syst. Appl. Microbiol. 18, 274-278 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: L37520|g576922 isolate_name= ac-1 BASE COUNT 299 a 381 c 519 g 228 t 2949 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......GGU -GAAC-GC-- UGGC-GGC-G -UGC-CU--A AGAC-AUGCA A-GUS-GGGC 121 G--GG----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- CCAUGGG-GU (--UU----- ---------- ---------- 241 --------U- -)AC-UCCGU GG-------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UC--- AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAC -GC-GUGGG- UGA--CCU-A C-CCGG---A -AGUG-U-GG 421 -GAC-AA-CC C--------- ------GG-- G(-GAAA-)C -UCGG-G--C UAAUCCC-GC 481 AU-GUG---- ---------- -------G-U CA-U--G--- ---UCC-(-- --------UG 541 UG-------- -)-GGG---- -C-AU----G AU--UAAA-- ---GGGC--- ---------- 601 --(------- ---GAGA--- ---)------ ---------| ---GUC--C- G--CUU---- 661 ----CCGG-- AUG---G-|G CCCGC----- -GU|----CC C--AUCA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAA-GG) -C-CCACC-A A|-GGC-GA- CGA------- -----CG-GG 781 U-AG-C-CG| -G-UCU--(G -AGA)-GGAU ----GG-C-- CGG-C|C-AC -AGGGG-C-A 841 (CUGA-GA-C ACG)--GGCC -CCA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-U 901 AGG-AAUCUU C-CGCAAU-- GG-GC-(GCA A)-GCC-UGA CGGA|-GCGA CGCC-GC-UU 961 G-G-AG-G-A G-GAA--G-C CC(--UU-CG --)GG-GUGU AAA--CUCC| UGAA--C-UG 1021 --GG-GAC-- GA-AAGC-CC --C------( -----GAUGA ---------) ------G-GG 1081 ---------- -------GGA U-GA-CGGU- A-CCC-A-GG U-AA--U-AG ---------C 1141 -GCCGGCC-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGCG-C-- 1201 GAG-CGUUAC CC-GGAUUUA -CU-GGGC|G UAAA-GGGC- GUG-UAG-GC -G|-GC-UU- 1261 G-GG-GCG|U CCC---AUGU G-AAA-GA-C CA-CGG-C(- UC-A)A-CCG -UG-G-GGG- 1321 -AGCG-UGGG A-UAC-GCUC A-GGCUA-GA CGG-----CG G-GA-GGGGG UGG-U|GGAA 1381 UU-CCCGGA- GUA-GCG(-G UGAAA)-UGC -GC-AGAU-A CC-GGGAGG- AACG-CCGA- 1441 -U-A-GC(-G AA-G)GCAG- -CCACCUG-- ---------- ---------- ---------G 1501 CUC--GU-UC GUGACG-CUG AG-G------ -------CG- C-GAAA-SS- SU-GGG-GA- 1561 GC-AAA-CC- -GG(AUUA-G AUAC)-CCG- ----GGUA-G UC----CAC- G-CC-CU--A 1621 AAC-G-AUGC G--CN-CU-- -------A|G -GU-CU-CUG -GG------- ---------- 1681 -(-UU-U-)- ---------- ---------- ---------- ---------U -CUGGG-GGC 1741 CG--AA---- --GC-(CAA- ---C)G-CG- UUAA-GCCNN C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AGG-CC-UUG ACA-UG|--- -------C-U ---AGGG--- -AA----CCU 1981 -GCC-U--(- GAAA-)-GGG -U-GGGG--- UG-------- -CCCC----- --(GC----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------G A-)------- GGGG------ ----AG---| CCC-UA-GCA |---C|A--G 2161 GU-GC-UGCA UG|G-CCG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-CU-G |-CC--GUU- 2281 AG--UUGC-C AG-CGG---- ---------- ---------- ----(---UU ---AAG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CCG|G 2701 G-CA-CU-C- U-AAC-GG-G A-CU-G-CCU --GC(-G--A AA)-GCA-G- -GAGG-A-AG 2761 G-CG-GGG-A CG-ACG--UC -U-GGUC-AU CAU-G-GC-C CUUAC-G-GC -CU--GGGC- 2821 G-ACA-CA-C GUG--CUACA AUGCC-C-AC -UA--CAGAG CGA-G-G-C- GA-CCU-G(G 2881 -CGA)CAGG- ---------- GA-GCGAA-U CGCGG-AAAG -GU-G-GGC- GUAGUUCGGA 2941 U-UGGGGUC- (UGCAAC-C- C)-GACCCCA -UGAAGC-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGCCAU)-G CCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACG--- --CCA-UGGG A--GC-GGG- UU-CU-ACCC -GAA-G-UCG 3121 C-CGG-G--- -AG-CC---- ---------- ---------- -----(---- -UUAG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GG----C-A G-GC-GC-CG A-GGGU-AGG GCC-CG-UG- A......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS T.spOSRam4 4376 bp RNA RNA 02-JUL-1998 DEFINITION Thermus sp. str. OS-Ramaley-4. ACCESSION No information KEYWORDS No information. SOURCE Thermus sp. str. OS-Ramaley-4. ORGANISM Thermus sp. REFERENCE 1 AUTHORS Bateson,M.M., Thibault,K.J. and Ward,D.M. TITLE Comparative Analysis of 16S Ribosomal RNA Sequences of Thermus Species JOURNAL Syst. Appl. Microbiol. 13, 8-13 (1990) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X58344 geog_source= Octopus Spring, Yellowstone National Park, USA isolate_name= OS-Ramaley-4 BASE COUNT 137 a 158 c 220 g 92 t 3769 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ..U|----CC C--AUCA-G- CUA-G---UU 721 GG-UG-GG-( GU-NNN-GG) -C-CCACC-A A|-GGC-GA- CGA------- -----CG-GG 781 U-AG-C-CG| -G-UCU--(G -AGA)-GGAU ----GG-C-- CGG-C|C-AC -AGGGG-C-A 841 (CUGA-GA-C WCG)--GGCC -NNN-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-U 901 AGG-AAUCUU C-CGCAAU-- GG-GC-(GCA A)-GCC-UGA CGGA|-GCGA CGCM-NH-WU 961 G-G-AG-G-A G-GAA-AG-C --(--UU-CG --)GG-GUGU AAA--CUCC| UGAA--C-UG 1021 --GG-GAC-- GA-AAGC-CC --C------( -----GNNGA ---------) ------N-GG 1081 ---------- -------GGA U-GA-CGGU- AUCCN-A-GG U-WA--U-AG ---------C 1141 -GCCGGC... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|...A 1381 UU-CCCGGA- GUA-GCG(-G UGAAA)-UGC -GC-AGAU-A CC-GGGAGG- AACG-CCNA- 1441 -U-N-GC(-G AA-G)GCAG- -CCACCUG-- ---------- ---------- ---------G 1501 CUC--GU-UC GUGACG-CUG AG-G------ -------CG- C-GAAA-GC- RU-GGG-GA- 1561 GC-AAA-CC- -GG(AUUA-G AUAC)-CMG- ----GGUA-G UC----CAA- G-CC-CU--A 1621 AAC-G-AUGC G--CG-CU-- -------A|G -GU-CU-CUG -GG....... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..).....G- -GAGG-A-AG 2761 G-HG-GGG-A CG-ACG--UC -U-GGUC-AU CAU-N----N CUUAC-G-GC -MU--GGGC- 2821 G-ACA-CA-C GUG--CUACA AUGCC-C-AC -UA--CAGAG CGA-G-G-C- GA-CCU-G(G 2881 -CRA)CAGG- ---------- GA-GCGAA-U CGCGG-AAAG -GU-G-GGN- GUAGUUCGGA 2941 U-UGGGGUC- (UGCAAC-C- C)-GACCCCA -UGAAGC-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGCCAU)-G CCG-CGGUG- AAUAC-GUU- CCC-GGG... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS T.spZFI 4376 bp RNA RNA 02-JUL-1998 DEFINITION Thermus sp. str. ZFI A.2. ACCESSION No information KEYWORDS No information. SOURCE Thermus sp. str. ZFI A.2. ORGANISM Thermus sp. REFERENCE 1 AUTHORS Saul,D.J., Rodrigo,A.G., Reeves,R.A., Williams,L.C., Borges,K.M ., Morgan,H.W. and Bergquist,P.L. TITLE Phylogeny of twenty Thermus isolates constructed from 16S rRNA gene sequence data JOURNAL Int. J. Syst. Bacteriol. 43, 754-760 (1993) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: L09662 isolate_name= ZFI A.2 BASE COUNT 306 a 390 c 540 g 233 t 2907 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 GCUCAG-GGU -GAAC-GC-- UGGC-GGC-G -UGC-CU--A AGAC-AUGCA A-GUC-GRGC 121 G--GG----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --CCGUG-GG (--GU----- ---------- ---------- 241 --------UU -)CU-CACGG ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UC--- AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAC -GC-GUGGG- UGA--CCU-A C-CCGG---A -AGAG-G-GG 421 -GAC-AA-CC U--------- ------GG-- G(-GAAA-)C -CUAG-G--C UAAUCCC-CC 481 AU-GUG---- ---------- -------G-A CA-C--G--- ---UCC-(-- --------UG 541 UG-------- -)-GGG---- -C-GU----G UU--UAAA-- ---GGGU--- ---------- 601 --(------- ---GACG--- ---)------ ---------| --AGCC--C- G--CUU---- 661 ----CCGG-- AUG---G-|G CCCGC----- -GU|----CC C--AUCA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAG-AG) -C-CCACC-A A|-GGC-GA- CGA------- -----CG-GG 781 U-AG-C-CG| -G-UCU--(G -AGA)-GGAC ----GG-C-- CGG-C|C-AC -AGGGG-C-A 841 (CUGA-GA-C ACG)--GGCC -CCA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-U 901 AGG-AAUCUU C-CGCAAU-- GG-AC-(GGA A)-GUC-UGA CGGA|-GCGA CGCC-GC-UU 961 G-G-AG-G-A G-GAA--G-C CC(--UU-CG --)GG-GUGU AAA--CUCC| UGAA--C-UG 1021 --GG-GAC-- GA-AAGC-CC --U------( -----GAUGA ---------) ------G-GG 1081 ---------- -------GGA U-GA-CGGU- A-CCC-A-GG U-AA--U-AG ---------C 1141 -ACCGGCC-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGUG-C-- 1201 GAG-CGUUAC CC-GGAUUUA -CU-GGGC|G UAAA-GGGC- GUG-UAG-GC -G|-GU-CU- 1261 G-GG-GCG|U CCC---AUGU G-AAA-GA-C CA-CGG-C(- UC-A)A-CCG -UG-G-GGG- 1321 -AGCG-UGGG A-UAC-GCUC A-GGCUA-GA CGG-----CG G-GA-GGGGG UGG-U|GGAA 1381 UU-CCCGGA- GUA-GCG(-G UGAAA)-UGC -GC-AGAU-A CC-GGGAGG- AACG-CCGA- 1441 -U-G-GC(-G AA-G)GCAG- -CCACCUG-- ---------- ---------- ---------G 1501 CUC--GU-UC GUGACG-CUG AG-G------ -------CG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CC- -GG(AUUA-G AUAC)-CCG- ----GGUA-G UC----CAC- G-CC-CU--A 1621 AAC-G-AUGC G--CG-CU-- -------A|G -GU-CU-CUG -GG------- ---------- 1681 -(-GU-U-)- ---------- ---------- ---------- ---------U -CUGGG-GGC 1741 CG--AA---- --GC-(CAA- ---C)G-CG- UUAA-GCGCG C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AGG-CC-UUG ACA-UG|--- -------C-U ---AGGG--- -AA----CCU 1981 -GGG-U--(- GAAA-)-GCC -U-GGGG--- UG-------- -CCC------ --(GC----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------G A-)------- -GGG------ ----AG---| CCC-UA-GCA |---C|A--G 2161 GU-GC-UGCA UG|G-CCG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-CU-G |-CC--GUU- 2281 AG--UUGC-C AG-CGG---- ---------- ---------- ---G(---UG ---AGG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CCG|G 2701 G-CA-CU-C- U-AAC-GG-G A-CU-G-CCU --GC(-G--A AA)-GCA-G- -GAGG-A-AG 2761 G-CG-GGG-A CG-ACG--UC -U-GGUC-AU CAU-G-GC-C CUUAC-G-GC -CU--GGGC- 2821 G-ACA-CA-C GUG--CUACA AUGCC-C-AC -UA--CAGAG CGC-U-G-C- GA-CCC-G(G 2881 -UGA)CGGG- ---------- GA-GCGAA-U CGCGG-AAAG -GU-G-GGC- GUAGUUCGGA 2941 U-UGGGGUC- (UGCAAC-C- C)-GACCCCA -UGAAGC-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGCCAU)-G CCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACG--- --CCA-UGGG A--GC-GGG- UU-CU-ACCC -GAA-G-UCG 3121 C-CGG-G--- -AG-CC---- ---------- ---------- -----(---- -UUAG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GG----C-A G-GC-GC-CG A-GGGU-AGG GCU-CG-UG- ACU-GGGG-C 3301 G---AAGUC- GUAA-CAAGG UAGCU-GUAC C(G....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS T.spViI7 4376 bp RNA RNA 02-JUL-1998 DEFINITION Thermus sp. str. ViI7. ACCESSION No information KEYWORDS No information. SOURCE Thermus sp. str. ViI7. ORGANISM Thermus sp. REFERENCE 1 AUTHORS Embley,T.M., Thomas,R. and Williams,R. TITLE Reduced thermophilic bias in the 16S rDNA sequence from Thermus ruber provides further support for a relationship between Thermus and Deinococcus JOURNAL Syst. Appl. Microbiol. 16, 25-29 (1993) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: Z15061 isolate_name= ViI7 BASE COUNT 307 a 374 c 510 g 228 t 2957 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... ......U--A AGAC-AUGCA A-GUC-GAGC 121 G--GG----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --GCA-G-GU (--UU----- ---------- ---------- 241 --------AU -)GC-CGUGU ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-CC--- AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAC -GC-GUGGG- UGA--CCU-A C-CCGG---A -AGAG-G-CG 421 -GAC-AA-CC U--------- ------GG-- G(-GAAA-)C -CCAG-G--C UAAUCCG-CC 481 AU-GUG---- ---------- -------G-U CC-U--G--- ---UCC-(-- --------UG 541 UG-------- -)-GGG---- -U-AG----G AC--UAAA-- ---GGGU--- ---------- 601 --(------- ---GAAU--- ---)------ ---------| --AGCC--C- G--CUU---- 661 ----CCGG-- AUG---G-|G CCCGC----- -GU|----CC C--AUCA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAA-GG) -C-CCACC-A A|-GGC-GA- CGA------- -----CG-GG 781 U-AG-C-CG| -G-UCU--(G -AGA)-GGAU ----GG-C-- CGG-C|C-AC -AGGGG-C-A 841 (CUGA-GA-C ACG)--GGCC -CCA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-U 901 AGG-AAUCUU C-CGCAAU-- GG-AC-(GGA A)-GUC-UGA CGGA|-GCGA CGCC-GC-UU 961 G-G-AG-G-A G-GAA--G-C CC(--UU-CG --)GG-GUGU AAA--CUCC| UGAA--C-WG 1021 --GG-GAC-- GA-AAGC-CC --C------( -----GUAUA ---------) ------G-GG 1081 ---------- -------GGA U-GA-CGGU- A-CCC-A-GG U-AA--U-AG ---------C 1141 -GCCGGCC-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGCG-C-- 1201 GAG-CGUUAC CC-GGAUUUA -CU-GGGC|G UAAA-GGGC- GUG-UAG-GC -G|-GC-UU- 1261 G-GG-GCG|U CCC---AUGU G-AAA-GG-C CA-CGG-C(- UC-A)A-CCG -UG-G-AGG- 1321 -AGCG-UGGG A-UAC-GCUC A-GGCUA-GA GGG-----UG G-GA-GAGGG UGG-U|GGAA 1381 UU-CCCGGA- GUA-GCG(-G UGAAA)-UGC -GC-AGAU-A CC-GGGAGG- AACG-CCGA- 1441 -U-G-GC(-G AA-G)GCAG- -CCACCUG-- ---------- ---------- ---------G 1501 UCC--AC-UU CUGACG-CUG AG-G------ -------CG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CC- -GG(AUUA-G AUAC)-CCG- ----GGUA-G UC----CAC- G-CC-CU--A 1621 AAC-G-AUGC G--CG-CU-- -------A|G -GU-CU-UUG -GG------- ---------- 1681 -(-UU-U-)- ---------- ---------- ---------- ---------A -CCUGG-GGC 1741 CG--AA---- --GC-(CAA- ---C)G-CG- UUAA-GCGCG C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AGG-CC-UUG ACA-UG|--- -------C-U ---AGGG--- -GA----CCU 1981 -AGG-U--(- GAAA-)-GCC -U-GGGG--- UG-------- -CCC------ --(GC----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------G A-)------- -GGG------ ----AG---| CCC-UA-GCA |---C|A--G 2161 GU-GC-UGCA UG|G-CCG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-CU-G |-CC--CUU- 2281 AG--UUGC-C AG-CGG---- ---------- ---------- ---G(---AU ---AGG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CCG|G 2701 G-CA-CU-C- U-AAG-GG-G A-CU-G-CCU --GC(-G--A AA)-GCA-G- -GAGG-A-AG 2761 G-CG-GGG-A CG-ACG--UC -U-GGUC-AU CAU-G-GC-C CUUAC-G-GC -CU--GGGC- 2821 G-ACA-CA-C GUG--CUACA AUGCC-C-AC -UA--CAGAG CGA-U-G-C- GA-CCC-A(G 2881 -UGA)UGGG- ---------- GA-GCGAA-U CGCAA-AAAG -GU-G-GGC- GUAGUUCGGA 2941 U-UGGGGUC- (UGCAAC-C- C)-GACCCCA -UGAAGC-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGCCAU)-G CCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACN--- --CCA-UGGG A--GC-GGG- UU-CU-NNCC -GAA-G-UCG 3121 C-CGG-G--- -AN-CC---- ---------- ---------- -----(---- -UUAG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GG----C-A G-GC-GC-CG A-GGGU-NNG GCU-CG-UG- ACU-GGGG-C 3301 G---AAGUC- GUAA...... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS T.spNMX2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Thermus sp. str. NMX2 A.1. ACCESSION No information KEYWORDS No information. SOURCE Thermus sp. str. NMX2 A.1. ORGANISM Thermus sp. REFERENCE 1 AUTHORS Saul,D.J., Rodrigo,A.G., Reeves,R.A., Williams,L.C., Borges,K .M., Morgan,H.W. and Bergquist,P.L. TITLE Phylogeny of twenty Thermus isolates constructed from 16S rRNA gene sequence data JOURNAL Int. J. Syst. Bacteriol. 43, 754-760 (1993) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: L09661 isolate_name= NMX2 A.1 BASE COUNT 313 a 390 c 534 g 233 t 2906 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 GCUCAG-GGU -GAAC-GC-- UGGC-GGC-G -UGC-CU--A AGAC-AUGCA A-GUC-GAGC 121 G--GG----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --GCA-G-GU (--UU----- ---------- ---------- 241 --------AU -)AC-C-UGU ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UC--- AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAC -GC-GUGGG- UGA--CCU-A C-CCGG---A -AGAG-G-CG 421 -GAC-AA-CC U--------- ------GG-- G(-GAAA-)C -CCAG-G--C UAAUCCG-CC 481 AU-GUG---- ---------- -------G-U CC-U--G--- ---UCC-(-- --------UG 541 UG-------- -)-GGG---- -C-AG----G AC--UAAA-- ---GGGU--- ---------- 601 --(------- ---GGAU--- ---)------ ---------| --AGCC--C- G--CUU---- 661 ----CCGG-- AUG---G-|G CCCGC----- -GU|----CC C--AUCA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAA-GG) -C-CCACC-A A|-GGC-GA- CGA------- -----CG-GG 781 U-AG-C-CG| -G-UCU--(G -AGA)-GGAU ----GG-C-- CGG-C|C-AC -AGGGG-C-A 841 (CUGA-GA-C ACG)--GGCC -CCA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-U 901 AGG-AAUCUU C-CGCAAU-- GG-AC-(GGA A)-GUC-UGA CGGA|-GCGA CGCC-GC-UU 961 G-G-AG-G-A G-GAA--G-C CC(--UU-CG --)GG-GUGU AAA--CUCC| UGAA--C-UG 1021 --GG-GAC-- GA-AAGC-CC --C------( -----GUGUA ---------) ------G-GG 1081 ---------- -------GGA U-GA-CGGU- A-CCC-A-GG U-AA--U-AG ---------C 1141 -GCCGGCC-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGCG-C-- 1201 GAG-CGUUAC CC-GGAUUUA -CU-GGGC|G UAAA-GGGC- GUG-UAG-GC -G|-GC-CU- 1261 G-GG-GCG|U CCC---AUGU G-AAA-GG-C CA-CGG-C(- UC-A)A-CCG -UG-G-AGG- 1321 -AGCG-UGGG A-UAC-GCUC A-GGCUA-GA GGG-----UG G-GA-GAGGG UGG-U|GGAA 1381 UU-CCCGGA- GUA-GCG(-G UGAAA)-UGC -GC-AGAU-A CC-GGGAGG- AACG-CCGA- 1441 -U-G-GC(-G AA-G)GCAG- -CCACCUG-- ---------- ---------- ---------G 1501 UCC--AC-UU CUGACG-CUG AG-G------ -------CG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CC- -GG(AUUA-G AUAC)-CCG- ----GGUA-G UC----CAC- G-CC-CU--A 1621 AAC-G-AUGC G--CG-CU-- -------A|G -GU-CU-UUG -GGG------ ---------- 1681 -(-UU-UA)- ---------- ---------- ---------- ---------C -CUGGG-GGC 1741 CG--AA---- --GC-(CAA- ---C)G-CG- UUAA-GCGCG C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AGG-CC-UUG ACA-UG|--- -------C-U ---GGGG--- -AA----CCU 1981 -GGG-U--(- GAAA-)-GCC -U-GGGG--- UG-------- -CCC------ --(GC----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------G A-)------- -GGG------ ----AG---| CCC-CA-GCA |---C|A--G 2161 GU-GC-UGCA UG|G-CCG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-CU-G |-CC--CUU- 2281 AG--UUGC-C AG-CGG---- ---------- ---------- ---G(---UU ---AGG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CCG|G 2701 G-CA-CU-C- U-AAG-GG-G A-CU-G-CCU --GC(-G--A AA)-GCA-G- -GAGG-A-AG 2761 G-CG-GGG-A CG-ACG--UC -U-GGUC-AU CAU-G-GC-C CUUAC-G-GC -CU--GGGC- 2821 G-ACA-CA-C GUG--CUACA AUGCC-C-AC -UA--CAGAG CGA-G-G-C- GA-CCC-A(G 2881 -CGA)UGGG- ---------- GA-GCGAA-U CGCAA-AAAG -GU-G-GGC- GUAGUUCGGA 2941 U-UGGGGUC- (UGCAAC-C- C)-GACCCCA -UGAAGC-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGCCAU)-G CCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACG--- --CCA-UGGG A--GC-GGG- UU-CU-ACCC -GAA-G-UCG 3121 C-CGG-G--- -AG-CC---- ---------- ---------- -----(---- -UUAG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GG----C-A G-GC-GC-CG A-GGGU-AGG GCU-CG-UG- ACU-GGGG-C 3301 G---AAGUC- GUAA-CAAGG UAGCU-GUAC C(G....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS T.aquatic2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Thermus aquaticus str. X-1 ATCC 27978. ACCESSION No information KEYWORDS No information. SOURCE Thermus aquaticus str. X-1 ATCC 27978. ORGANISM Thermus aquaticus. REFERENCE 1 AUTHORS Weisburg,W.G., Giovannoni,S.J. and Woese,C.R. TITLE The Deinococcus-Thermus phylum and the effect of rRNA composition on phylogenetic tree construction JOURNAL Syst. Appl. Microbiol. 11, 128-134 (1989) STANDARD No information COMMENTS Organism information Culture collection: ATCC 27978 Sequence information (bases 1 to 4376) Corresponding GenBank entry: X58340 (bases 1 to 1504) isolate_name= X-1 BASE COUNT 255 a 320 c 393 g 190 t 3218 others ORIGIN 1 .......... .......... .......... ...NUGGUGG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GGU -GAAC-GC-- UGGC-GGC-G -UGC-CU--A AGAC-AUGCA A-G....... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). ......G--C UAAUCCC-CC 481 AU-G...... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| .UNGCN--N- G--CUU---- 661 ----CCGG-- AUG---G-|G CCCGC----- -GU|----CC C--AUCA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAA-GG) -C-CCACC-A A|-GGC-NA- CGA------- -----CG-GN 781 N-NG-C-CN| -G-UCU--(G -AGA)-GGAU ----GG-C-- CGG-C|C-AC -AGGGG-C-A 841 (CUGA-GA-C ACG)--GGCC -CCA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-U 901 AGG-AAUCUU C-CGCAAU-- GG-GC-(GCA A)-GCC-UGA CGGA|-GCGA CGCU-NC-NU 961 G-G-AG-G-A G-GAA--N-N CC(--UU-CG --)GG-GUGU AAA--CUCC| UGAA--C-CC 1021 --GG-GAC-- GA-AACC-CC --C------( -----GAUUA ---------) ------G-GG 1081 ---------- -------GAC U-GA-CGGU- A-CCG-G-GG U-AA--U-AG ---------C 1141 -GCCGGCC-A ACUCC-GUG( CCA--GCAGC CNCNGUA-A) U-A-C-GGAG |-NGCN-C-- 1201 NAN-CGUUAC CC-GGAUUUA -CU-GGGC|G UAAA-NNNC- GCG-CAG-GC -G|-GC-UU- 1261 G-GG-NNG|U CCC---AUGU G-AAA-UN-N CN-CGG-C(- UC-A)A-CCG -GG-G-AGA- 1321 -GGCN-NGGG A-UAC-GCUC A-GGCUA-GA CGG-----UG G-NN-GAGGN NNG-N|NGAA 1381 UU-CCCGGA- GUA-GCG(-G UGAAA)-UGC -GC-AGAU-A CC-GGGAGG- AACG-CCGA- 1441 -U-G-GC(-G AA-G)GCAG- -CCACCUG-- ---------- ---------- ---------G 1501 UCC--AC-UC GUGACG-CUG AG-G------ -------CG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CC- -GG(AUUA-G AUAC)-CCG- ----GGUA-G UC----CAC- G-CC-CU--A 1621 AAC-G-AUGC G--CG-CU-- -------A|G -GU-CU-CUG -GG------- ---------- 1681 -(-UU-A-)- ---------- ---------- ---------- --------UC -UGNGG-GGC 1741 CG--AA---- --GC-(UAA- ---C)G-GG- UUAA-GCGCG C|C|G-CCU- G-GGGAGUAC 1801 GCC-N---(N C..)...... ..-GAAACUC -AAA-G.... .......... .......... 1861 .......... .......... ........GU -UUAAUU-CG .(.....A-C G)--CGAAGA 1921 A-CCUUA-CC AGG-CC-UUG ACN-UG|--- -------C-U ---AGGG--- -AA----CCU 1981 -GGG-U--(- GAAA-)-GCC -U-GGGN--- UG-------- -C-CC----- --(GC----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------G A-)------- GGGG------ ----AG---| CCC-UA-GCA |---C|U--G 2161 GU-GC-UGCA UG|G-CCG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-CU-G |-CC--GUU- 2281 AG--UUGC-C AG-CGG---- ---------- ---------- ---G(---UG ---AAG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CCG|G 2701 G-CA-CU-C- U-AAC-GN-N A-CU-G-CCU --GC(-G--A AA)-GCA-G- -GAGG-A-AG 2761 G-CG-GGG-A CG-ACG--UC -U-GGUC-AU CAU-N-GC-C CUUAC-G-GC -CU--GGUC- 2821 G-ACA-CA-C GUG--CUACA AUGCC-C-AC -UA--CAGAG CGA-G-U-C- GA-CCU-G(G 2881 -CAA)CAGG- ---------- GA-GCGAA-U CGCAA-AAAG -GU-G-GGN- GUAGUUCGGA 2941 U-UGGGGUC- (UGCAAC-C- C)-GACCCCA -UGAAGC-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGCCAU)-G CCG-CGGUG- AAUAC-GUN- CC........ .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... GUAA-CAAG. .......... .(.....).. .......... GAUCACCUCC 3361 U...|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS T.aquatic3 4376 bp RNA RNA 02-JUL-1998 DEFINITION Thermus aquaticus str. YT-1. ACCESSION No information KEYWORDS No information. SOURCE Thermus aquaticus str. YT-1. ORGANISM Thermus aquaticus. REFERENCE 1 AUTHORS Bateson,M.M., Thibault,K.J. and Ward,D.M. TITLE Comparative Analysis of 16S Ribosomal RNA Sequences of Thermus Species JOURNAL Syst. Appl. Microbiol. 13, 8-13 (1990) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X58343 isolate_name= YT-1 BASE COUNT 142 a 169 c 237 g 93 t 3735 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... ...CUU---- 661 ----CCGG-- AUG---G-|G CCCGC----- -GU|----CC C--AUHA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAG-AN) -C-CCACN-W A|-GGC-GA- CGA------- -----YG-GG 781 U-AG-C-CG| -G-UCU--(G -AGA)-GGAC ----GG-C-- HGG-C|C-AC -AGGGG-C-A 841 (CUGA-GA-C WCG)--GGCN -NNN-C-UNN -(NNCG)--G GAG-GC-AG- C-A---GU-U 901 AGG-AAUCUU C-CGCAAU-- GG-GC-(GCA A)-GCC-UGA CGGA|-GCGA CGCH-GC-WU 961 G-G-AG-G-A G-GAA--G-- -C(--UU-CG --)GG-GUGU AAA--CUCC| UNAA--C-CC 1021 --GG-GAC-- GA-AACC-CC --C------( -----GANGA ---------) ------G-GG 1081 ---------- -------NNC U-GA-CGGU- A-CCG-G-NG U-AA--U-AG ---------C 1141 -GCCGGC... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......GGG UGG-U|GGAA 1381 UU-CCCGGA- GUA-GCG(-G UGAAA)-UGC -GC-AGAU-W CC-GGGAGG- AA-G-CCGA- 1441 -U-G-GC(-G AA-G)GCAG- -CCACCUN-- ---------- ---------- ---------G 1501 UCC--AC-UC GUGACG-CUG AG-G------ -------CG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CC- -GG(AUUA-G AUAC)-CCG- ----GGUA-G UC----CAH- G-CC-CU--N 1621 AAC-G-AUGC G--CG-CU-- -------A|G -GU-CU-CWG -GG....... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... ......GG-G A-CU-G-CCU --GC(-G--A AA)-GCH-G- -GAGG-A-AG 2761 G-HG-GGG-A YG-AYG--UC -U-NGUC-AU CAU-G----C CUUAC-G-GC -CU--GGGC- 2821 G-ACA-CA-C GUG--CUACA AUGCC-C-AC -UA--CAGAG CGA-G-G-C- GA-CCU-G(G 2881 -CNN)HAGG- ---------- GA-GCGAA-U CGCAA-AAAG -GU-G-GGN- GUAGUUCGGA 2941 U-UGGGGUC- (UGCAAC-C- C)-GACCCCA -UGAAGC-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGCCAU)-G CCG-CGGUG- AAUAC-GUU- CCC-GGG... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS T.aquaticu 4376 bp RNA RNA 02-JUL-1998 DEFINITION Thermus aquaticus str. YT-1. ACCESSION No information KEYWORDS No information. SOURCE Thermus aquaticus str. YT-1. ORGANISM Thermus aquaticus. REFERENCE 1 AUTHORS ,K.M., Morgan,H.W. and Bergquist,P.L. Saul,D.J., Rodrigo,A.G., Reeves,R.A., Williams,L.C., Borges TITLE rRNA gene sequence data Phylogeny of twenty Thermus isolates constructed from 16S JOURNAL Int. J. Syst. Bacteriol. 43, 754-760 (1993) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: L09663 isolate_name= YT-1 BASE COUNT 313 a 395 c 531 g 231 t 2906 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 GCUCAG-GGU -GAAC-GC-- UGGC-GGC-G -UGC-CU--A AGAC-AUGCA A-GUC-GUGC 121 G--GG----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --CCGUG-GG (--GU----- ---------- ---------- 241 --------AU -)CU-CACGG ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UC--- AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAC -GC-GUGGG- UGA--CCU-A C-CCGG---A -AGAG-G-GG 421 -GAC-AA-CA U--------- ------GG-- G(-GAAA-)C -CCAG-G--C UAAUCCC-CC 481 AU-GUG---- ---------- -------G-A CA-C--A--- ---UCC-(-- --------UG 541 UG-------- -)-GGG---- -U-GU----G UU--UAAA-- ---GGGU--- ---------- 601 --(------- ----UUU--- ---)------ ---------| ---GCC--C- G--CUU---- 661 ----CCGG-- AUG---G-|G CCCGC----- -GU|----CC C--AUCA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAG-AG) -C-CCACC-A A|-GGC-GA- CGA------- -----CG-GG 781 U-AG-C-CG| -G-UCU--(G -AGA)-GGAC ----GG-C-- CGG-C|C-AC -AGGGG-C-A 841 (CUGA-GA-C ACG)--GGCC -CCA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-U 901 AGG-AAUCUU C-CGCAAU-- GG-GC-(GCA A)-GCC-UGA CGGA|-GCGA CGCC-GC-UU 961 G-G-AG-G-A G-GAA--G-C CC(--UU-CG --)GG-GUGU AAA--CUCC| UGAA--C-CC 1021 --GG-GAC-- GA-AACC-CC --C------( -----GAUGA ---------) ------G-GG 1081 ---------- -------GAC U-GA-CGGU- A-CCG-G-GG U-AA--U-AG ---------C 1141 -GCCGGCC-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGCG-C-- 1201 GAG-CGUUAC CC-GGAUUUA -CU-GGGC|G UAAA-GGGC- GUG-UAG-GC -G|-GC-UU- 1261 G-GG-GCG|U CCC---AUGU G-AAA-GG-C CA-CGG-C(- UC-A)A-CCG -UG-G-AGG- 1321 -AGCG-UGGG A-UAC-GCUC A-GGCUA-GA CGG-----UG G-GA-GAGGG UGG-U|GGAA 1381 UU-CCCGGA- GUA-GCG(-G UGAAA)-UGC -GC-AGAU-A CC-GGGAGG- AACG-CCGA- 1441 -U-G-GC(-G AA-G)GCAG- -CCACCUG-- ---------- ---------- ---------G 1501 UCC--AC-UC GUGACG-CUG AG-G------ -------CG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CC- -GG(AUUA-G AUAC)-CCG- ----GGUA-G UC----CAC- G-CC-CU--A 1621 AAC-G-AUGC G--CG-CU-- -------A|G -GU-CU-CUG -GG------- ---------- 1681 -(-UU-A-)- ---------- ---------- ---------- ---------U -CUGGG-GGC 1741 CG--AA---- --GC-(UAA- ---C)G-CG- UUAA-GCGCG C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AGG-CC-UUG ACA-UG|--- -------C-U ---AGGG--- -AA----CCU 1981 -GGG-U--(- GAAA-)-GCC -U-GGGG--- UG-------- -CCCC----- --(GC----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------G A-)------- GGGG------ ----AG---| CCC-UA-GCA |---C|A--G 2161 GU-GC-UGCA UG|G-CCG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-CU-G |-CC--GUU- 2281 AG--UUGC-C AG-CGG---- ---------- ---------- ---G(---UG ---AAG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CCG|G 2701 G-CA-CU-C- U-AAC-GG-G A-CU-G-CCU --GC(-G--A AA)-GCA-G- -GAGG-A-AG 2761 G-CG-GGG-A CG-ACG--UC -U-GGUC-AU CAU-G-GC-C CUUAC-G-GC -CU--GGGC- 2821 G-ACA-CA-C GUG--CUACA AUGCC-C-AC -UA--CAGAG CGA-G-G-C- GA-CCU-G(G 2881 -CAA)CAGG- ---------- GA-GCGAA-U CGCAA-AAAG -GU-G-GGC- GUAGUUCGGA 2941 U-UGGGGUC- (UGCAAC-C- C)-GACCCCA -UGAAGC-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGCCAU)-G CCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACG--- --CCA-UGGG A--GC-GGG- UU-CU-ACCC -GAA-G-UCG 3121 C-CGG-G--- -AG-CC---- ---------- ---------- -----(---- -UUAG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GG----C-A G-GC-GC-CG A-GGGU-AGG GCC-CG-UG- ACU-GGGG-C 3301 G---AAGUC- GUAA-CAAGG UAGCU-GUAC C(G....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS T.sp_ac7 4376 bp RNA RNA 02-JUL-1998 DEFINITION Thermus sp. str. ac-7. ACCESSION No information KEYWORDS No information. SOURCE Thermus sp. str. ac-7. ORGANISM Thermus sp. REFERENCE 1 AUTHORS Nold,S.C. and Ward,D.M. TITLE Diverse thermus species inhabit a single hot spring microbial mat JOURNAL Syst. Appl. Microbiol. 18, 274-278 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: L37522|g576925 isolate_name= ac-7 BASE COUNT 303 a 384 c 512 g 229 t 2948 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......GGU -GAAC-GC-- UGGC-GGC-G -UGC-CU--A AGUC-AUGCA A-GUC-GUGC 121 G--GG----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --CCGUG-GG (--UU----- ---------- ---------- 241 --------AU -)CU-CACGG ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UC--- AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAC -GC-GUGGG- UGA--CCU-A C-CCGG---A -AGAG-G-GG 421 -GAC-AA-CC U--------- ------GG-- G(-GAAA-)C -CCAG-G--C UAAUCCC-CC 481 AU-GUG---- ---------- -------G-A CG-C--A--- ---UCC-(-- --------UG 541 UG-------- -)-GGG---- -U-GU----G UU--UAAA-- ---GGGU--- ---------- 601 --(------- ----UUU--- ---)------ ---------| ---ACC--C- G--CUU---- 661 ----CCGG-- AUG---G-|G CCCGC----- -GU|----CC C--AUCA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAG-AG) -C-CCACC-A A|-GGC-GA- CGA------- -----CG-GG 781 U-AG-C-CG| -G-UCU--(G -AGA)-GGAU ----GG-C-- CGG-C|C-AC -AGGGG-C-A 841 (CUGA-GA-C ACG)--GGCC -CCA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-U 901 AGG-AAUCUU C-CGCAAU-- GG-AC-(GCA A)-GUC-UGA CGGA|-GCGA CGCC-GC-UU 961 G-G-AG-G-A G-GAA--G-C CC(--UU-CG --)GG-GUGU AAA--CUCC| UGAA--C-CC 1021 --GG-GAC-- GA-AACC-CC --C------( -----GAUGA ---------) ------G-GG 1081 ---------- -------GAC C-GA-CGGU- A-CCG-G-GG U-AA--U-AG ---------C 1141 -GCCGGCC-A AUUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGCG-C-- 1201 GAG-CGUUAC CC-GGAUUUA -CU-GGGC|G UAAA-GGGC- GUG-UAG-GC -G|-GC-UU- 1261 G-GG-GCG|U CCC---AUGU G-AAA-GG-C CA-CGG-C(- UC-A)A-CCG -UG-G-AGG- 1321 -AGCG-UGGG A-UAC-GCUC A-GGCUA-GA CGG-----UG G-GA-GAGGG UGG-U|GGAA 1381 UU-CCCGGA- GUA-GCG(-G UGAAA)-UGC -GC-AGAU-A CC-GGGAGG- AACG-CCGA- 1441 -U-G-GC(-G AA-G)GCAG- -CCACCUG-- ---------- ---------- ---------G 1501 CUC--AC-UG GUGACG-CUG AG-G------ -------CG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CC- -GG(AUUA-G AUAC)-CCG- ----GGUA-G UC----CAC- G-CC-CU--A 1621 AAC-G-AUGC G--CG-CU-- -------A|G -GU-CU-CUG -GG------- ---------- 1681 -(-UU-A-)- ---------- ---------- ---------- ---------U -CUGGG-GGC 1741 CG--AA---- --GC-(CAA- ---C)G-CG- UUAA-NCNCG C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AGG-CC-UUG ACA-UG|--- -------C-U ---AGGG--- -GA----CCU 1981 -AGG-U--(- GAAA-)-GCC -U-GGGG--- UG-------- -CCCU----- --(GC----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------G A-)------- GGGG------ ----AG---| CCC-UA-GCA |---C|A--G 2161 GU-GC-UGCA UG|G-CCG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-CU-G |-CC--GUU- 2281 AG--UUGC-C AG-CGG---- ---------- ---------- ---G(---UG ---AAG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CCG|G 2701 G-CA-CU-C- U-AAC-CG-G A-CU-G-CCU --GC(-G--A AA)-GCA-G- -GAGG-A-AG 2761 G-CG-GGG-A CG-ACG--UC -U-GGUC-AU CAU-G-GC-C CUUAC-G-GC -CU--GGGC- 2821 G-ACA-CA-C GUG--CUACA AUGCC-C-AC -UA--CAGAG CGA-G-G-C- GA-CCU-G(G 2881 -CAA)CAGG- ---------- GA-GCGAA-U CGCAA-AAAG -GU-G-GGC- GUAGUUCGGA 2941 U-UGGGGUC- (UGCAAC-C- C)-GACCCCA -UGAAGC-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGCCAU)-G CCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACG--- --CCA-UGGG A--GC-GKG- UU-UU-ACCC -GAA-G-UCG 3121 C-CGG-G--- -AG-CC---- ---------- ---------- -----(---- -UUAG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GG----C-A G-GC-GC-CG A-GGGU-AGG GCC-CG-UG- A......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS T.spYSPID 4376 bp RNA RNA 02-JUL-1998 DEFINITION Thermus sp. str. YSPID A.1. ACCESSION No information KEYWORDS No information. SOURCE Thermus sp. str. YSPID A.1. ORGANISM Thermus sp. REFERENCE 1 AUTHORS Saul,D.J., Rodrigo,A.G., Reeves,R.A., Williams,L.C., Borges,K .M., Morgan,H.W. and Bergquist,P.L. TITLE Phylogeny of twenty Thermus isolates constructed from 16S rRNA gene sequence data JOURNAL Int. J. Syst. Bacteriol. 43, 754-760 (1993) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: L10070|g452147 isolate_name= YSPID A.1 BASE COUNT 312 a 396 c 529 g 233 t 2906 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 GCUCAG-GGU -GAAC-GC-- UGGC-GGC-G -UGC-CU--A AGAC-AUGCA A-GUC-GUGC 121 G--GG----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --CCGUG-GG (--UU----- ---------- ---------- 241 --------AU -)CU-CACGG ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UC--- AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAC -GC-GUGGG- UGA--CCU-A C-CCGG---A -AGAG-G-GG 421 -GAC-AA-CC U--------- ------GG-- G(-GAAA-)C -CCAG-G--C UAAUCCC-CC 481 AU-GUG---- ---------- -------G-A CG-C--A--- ---UCC-(-- --------UU 541 UG-------- -)-GGG---- -U-GU----G UU--UAAA-- ---GGGU--- ---------- 601 --(------- ----UUU--- ---)------ ---------| ---ACC--C- G--CUU---- 661 ----CCGG-- AUG---G-|G CCCGC----- -GU|----CC C--AUCA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAG-AG) -C-CCACC-A A|-GGC-GA- CGA------- -----CG-GG 781 U-AG-C-CG| -G-UCU--(G -AGA)-GGAU ----GG-C-- CGG-C|C-AC -AGGGG-C-A 841 (CUGA-GA-C ACG)--GGCC -CCA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-U 901 AGG-AAUCUU C-CGCAAU-- GG-GC-(GCA A)-GCC-UGA CGGA|-GCGA CGCC-GC-UU 961 G-G-AG-G-A G-GAA--G-C CC(--UU-CG --)GG-GUGU AAA--CUCC| UGAA--C-CC 1021 --GG-GAC-- GA-AACC-CC --C------( -----GAUGA ---------) ------G-GG 1081 ---------- -------GAC U-GA-CGGU- A-CCG-G-GG U-AA--U-AG ---------C 1141 -GCCGGCC-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGCG-C-- 1201 GAG-CGUUAC CC-GGAUUUA -CU-GGGC|G UAAA-GGGC- GUG-UAG-GC -G|-GC-CU- 1261 G-GG-GCG|U CCC---AUGU G-AAA-GG-C CA-CGG-C(- UC-A)A-CCG -UG-G-AGG- 1321 -AGCG-UGGG A-UAC-GCUC A-GGCUA-GA CGG-----UG G-GA-GAGGG UGG-U|GGAA 1381 UU-CCCGGA- GUA-GCG(-G UGAAA)-UGC -GC-AGAU-A CC-GGGAGG- AACG-CCGA- 1441 -U-G-GC(-G AA-G)GCAG- -CCACCUG-- ---------- ---------- ---------G 1501 CUC--AC-AU GUGACG-CUG AG-G------ -------CG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CC- -GG(AUUA-G AUAC)-CCG- ----GGUA-G UC----CAC- G-CC-CU--A 1621 AAC-G-AUGC G--CG-CU-- -------A|G -GU-CU-CUG -GG------- ---------- 1681 -(-UU-A-)- ---------- ---------- ---------- ---------U -CUGGG-GGC 1741 CG--AA---- --GC-(CAA- ---C)G-CG- UUAA-GCGCG C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AGG-CC-UUG ACA-UG|--- -------C-U ---AGGG--- -AA----CCU 1981 -GGG-U--(- GAAA-)-GCC -U-GGGG--- UG-------- -CCCC----- --(GC----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------G A-)------- GGGG------ ----AG---| CCC-UA-GCA |---C|A--G 2161 GU-GC-UGCA UG|G-CCG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-CU-G |-CC--GUU- 2281 AG--UUGC-C AG-CGG---- ---------- ---------- ---G(---UC ---AAG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CCG|G 2701 G-CA-CU-C- U-AAC-GG-G A-CU-G-CCU --GC(-G--A AA)-GCA-G- -GAGG-A-AG 2761 G-CG-GGG-A CG-ACG--UC -U-GGUC-AU CAU-G-GC-C CUUAC-G-GC -CU--GGGC- 2821 G-ACA-CA-C GUG--CUACA AUGCC-C-AC -UA--CAGAG CGA-G-G-C- GA-CCU-G(G 2881 -UGA)CAGG- ---------- GA-GCGAA-U CGCAA-AAAG -GU-G-GGC- GUAGUUCGGA 2941 U-UGGGGUC- (UGCAAC-C- C)-GACCCCA -UGAAGC-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGCCAU)-G CCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACG--- --CCA-UGGG A--GC-GGG- UU-CU-ACCC -GAA-G-UCG 3121 C-CGG-G--- -AG-CC---- ---------- ---------- -----(---- -UUAG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GG----C-A G-GC-GC-CG A-GGGU-AGG GCC-CG-UG- ACU-GGGG-C 3301 G---AAGUC- GUAA-CAAGG UAGCU-GUAC C(G....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS T.spSPS14 4376 bp RNA RNA 02-JUL-1998 DEFINITION Thermus sp. str. SPS14. ACCESSION No information KEYWORDS No information. SOURCE Thermus sp. str. SPS14. ORGANISM Thermus sp. REFERENCE 1 AUTHORS Embley,T.M., Thomas,R. and Williams,R. TITLE Reduced thermophilic bias in the 16S rDNA sequence from Thermus ruber provides further support for a relationship between Thermus and Deinococcus JOURNAL Syst. Appl. Microbiol. 16, 25-29 (1993) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: Z15060 isolate_name= SPS14 BASE COUNT 294 a 394 c 456 g 183 t 3049 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .....CU--A AGAC-AUGCA A-GUC-GUGC 121 G--GG----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -----GU-GG (--UU----- ---------- ---------- 241 --------CG -)CC-ACC-- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|--C--- AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAC -GC-GUGGG- UGA--CCU-G C-CCGG---A -AGUG-G-GG 421 -GAC-AA-CC C--------- ------GG-- G(-GAAA-)C -CCGG-G--C UAAUCCC-CC 481 AU-GUG---- ---------- -------G-U CC-G--G--- ---CCC-(-- --------C- 541 UG-------- -)-GGC---- -C-GU----G AC--UAAA-- ---GGCC--- ---------- 601 --(------- ----AAA--- ---)------ ---------| ---AGC--C- G--CUU---- 661 ----CCGG-- AUG---G-|G CCCGC----- -GU|----CC C--AUCA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAC-GG) -C-CCACC-A A|-GGC-AA- CGA------- -----CG-GG 781 U-AG-C-CG| -G-UCU--(G -AGA)-GGAU ----GG-C-- CGG-C|C-AC -AGGGG-C-A 841 (CUGA-GA-C ACG)--GGCC -CCA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-U 901 AGG-AAUCUU C-CGCAAU-- GG-GC-(GAA A)-GCC-UGA CGGA|-GCGA CGCC-GC-UU 961 G-C-GG-G-A C-GAA--G-C CC(--CU-CG --)GG-GUGU AAA--CCGC| UGAA--C-CU 1021 --GG-GAC-- GA-AAAC-CC --C------( -----CACAA ---------) ------G-GG 1081 ---------- -------GAC U-GA-CGGU- A-CCA-G-GG U-AA--U-A. .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .........C CA-CGG-C(- UC-A)A-CCG -UG-G-AAC- 1321 -CGCG-CCGN A-UAC-GCCC G-GGCUA-GA CGG-----CG G-GA-GAGGG UGG-U|GGAA 1381 UU-CCCGGA- GUA-GCG(-G UGAAA)-UGC -GC-AGAU-A CC-GGGAGG- AACG-CCAA- 1441 -U-G-GC(-G AA-G)GCAG- -CCACCUG-- ---------- ---------- ---------G 1501 CCC--GC-CC GUGACG-CUG AG-G------ -------CG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CC- -GG(AUUA-G AUAC)-CCG- ----GGUA-G UC----CAC- G-CC-CU--A 1621 AAC-G-UUGC G--CG-CU-- -------A|G -GU-CU-CUG -GG------- ---------- 1681 -(-UC-C-)- ---------- ---------- ---------- ---------U -CUGGG-GGC 1741 CG--AA---- --GC-(UAA- ---C)G-CG- UUAA-GCGCG C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-GAAACUC -AAA-GGAAU UG-ACGGG-G -A-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AGG-CC-UUG ACA-UG|--- -------C-U ---GGGG--- -AA----CCC 1981 -GGG-U--(- GAAA-)-ACC -C-GGGG--- UG-------- -C-CC----- --(GC----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------A A-)------- GG-G------ ----AA---| CCC-CA-GCA |---C|A--G 2161 GU-GC-UGCA UG|G-CCG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-CC-G |-CC--CUU- 2281 AG--UUGC-C AG-CGG---- ---------- ---------- ----(---GC ---AAG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CCG|G 2701 G-CA-CU-C- U-AAG-GG-G A-CU-G-CCG --GC(-G--A AA)-GCC-G- -GAGG-A-AG 2761 G-CG-GGG-A CG-ACG--UC -U-GGUC-AU CAU-G-GC-C CUUAC-G-GC -CU--GGGC- 2821 G-ACA-CA-C GUG--CUACA AUGCC-C-GC -CA--CAAAG CGA-C-G-C- AA-CCC-G(G 2881 -CAA)CGGG- ---------- AA-GCCAA-U CGCAA-AAAA -GC-G-GGC- CCAGUUCGGA 2941 U-UGGGGUC- (UGCAAC-C- C)-GACCCCA -UGAAGC-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGCCAC)-G CCG-CGGUG- AAUAC-GUU- CCC-GGG-UC UUGUA----C 3061 ACACCGCCC- GUC-ACG--- --CCA-UGGG A--GC-GGG- CU-CU-ACCC -GAA-G-UCG 3121 C-CCA-C--- ----CC---- ---------- ---------- -----(---- CUACA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GG----G-A G-GC-GC-CC A-GGGU-AGG GCU-CG-UG- ACU-GGGG-C 3301 G---AAGUC- GUAA-CAAGG UAGCU-GUAC C(GGA-A)GG UG........ .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS T.spHS 4376 bp RNA RNA 02-JUL-1998 DEFINITION Thermus sp. str. HS A.1. ACCESSION No information KEYWORDS No information. SOURCE Thermus sp. str. HS A.1. ORGANISM Thermus sp. REFERENCE 1 AUTHORS Saul,D.J., Rodrigo,A.G., Reeves,R.A., Williams,L.C., Borges,K.M., Morgan,H.W. and Bergquist,P.L. TITLE Phylogeny of twenty Thermus isolates constructed from 16S rRNA gene sequence data JOURNAL Int. J. Syst. Bacteriol. 43, 754-760 (1993) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: L09670 isolate_name= HS A.1 BASE COUNT 304 a 418 c 532 g 218 t 2904 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 GCUCAG-GGU -GAAC-GC-- UGGC-GGC-G -UGC-CU--A AGAC-AUGCA A-GUC-GUGC 121 G--GG----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- CCGCGGG-GU (--UU----- ---------- ---------- 241 --------U- -)AC-UCUGC GG-------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UC--- AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAC -GC-GUGGG- UGA--CCU-A C-CCGG---A -AGAG-G-GG 421 -GAC-AA-CC C--------- ------GG-- G(-GAAA-)C -UCGG-G--C UAAUCCC-CC 481 AU-GUG---- ---------- -------G-A CC-C--G--- ---CCC-(-- --------CU 541 UG-------- -)-GGG---- -C-GU----G UC--CAAA-- ---GGGC--- ---------- 601 --(------- ----UUU--- ---)------ ---------| ---GCC--C- G--CUU---- 661 ----CCGG-- AUG---G-|G CCCGC----- -GU|----CC C--AUCA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAU-GG) -C-CCACC-A A|-GGC-GA- CGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGU ----GG-C-- CGG-C|C-AC -AGGGG-C-A 841 (CUGA-GA-C ACG)--GGCC -CCA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-U 901 AGG-AAUCUU C-CGCAAU-- GG-GC-(GCA A)-GCC-UGA CGGA|-GCGA CGCC-GC-UU 961 G-G-AG-G-A A-GAA--G-C CC(--UU-CG --)GG-GUGU AAA--CUCC| UGAA--C-CC 1021 --GG-GAC-- GA-AACC-CC --C------( -----GAUGA ---------) ------G-GG 1081 ---------- -------GAC U-GA-CGGU- A-CCG-G-GG U-AA--U-AG ---------C 1141 -GCCGGCC-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGCG-C-- 1201 GAG-CGUUAC CC-GGAUUCA -CU-GGGC|G UAAA-GGGC- GUG-UAG-GC -G|-GC-CU- 1261 G-GG-GCG|U CCC---AUGU G-AAA-GA-C CA-CGG-C(- UC-A)A-CCG -UG-G-GGG- 1321 -AGCG-UGGG A-UAC-GCUC A-GGCUA-GA CGG-----UG G-GA-GAGGG UGG-U|GGAA 1381 UU-CCCGGA- GUA-GCG(-G UGAAA)-UGC -GC-AGAU-A CC-GGGAGG- AACG-CCGA- 1441 -U-G-GC(-G AA-G)GCAG- -CCACCUG-- ---------- ---------- ---------G 1501 UCC--AC-CC GUGACG-CUG AG-G------ -------CG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CC- -GG(AUUA-G AUAC)-CCG- ----GGUA-G UC----CAC- G-CC-CU--A 1621 AAC-G-AUGC G--CG-CU-- -------A|G -GU-CU-CUG -GG------- ---------- 1681 -(-UC-U-)- ---------- ---------- ---------- ---------C -CUGGG-GGC 1741 CG--AA---- --GC-(UAA- ---C)G-CG- UUAA-GCGCG C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AGG-CC-UUG ACA-UG|--- -------C-U ---AGGG--- -AA----CCC 1981 -GGG-U--(- GAAA-)-GCC -U-GGGG--- UG-------- -CCCC----- --(GC----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------G A-)------- GGGG------ ----AG---| CCC-UA-GCA |---C|A--G 2161 GU-GC-UGCA UG|G-CCG-- UCG-UCA|-G C-U---CG-U |GC-C(-GUG A)-GGUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-CC-G |-CC--GUU- 2281 AG--UUGC-C AG-CGG---- ---------- ---------- ----(---UU ---CGG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CCG|G 2701 G-CA-CU-C- U-AAC-GG-G A-CU-G-CCC --GC(-G--A AA)-GCG-G- -GAGG-A-AG 2761 G-AG-GGG-A CG-ACG--UC -U-GGUC-AG CAU-G-GC-C CUUAA-G-GC -CU--GGGC- 2821 G-ACA-CA-C GUG--CUACA AUGCC-C-AC -UA--CAAAG CGA-A-G-C- CA-CCC-G(G 2881 -CAA)CGGG- ---------- GA-GCUAA-U CGCAA-AAAG -GU-G-GGC- CCAGUUCGGA 2941 U-UGGGGUC- (UGCAAC-C- C)-GACCCCA -UGAAGC-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGCCAU)-G CCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACG--- --CCA-UGGG A--GC-GGG- CU-CU-ACCC -GAA-G-UCG 3121 C-CGG-G--- -AG-CC---- ---------- ---------- -----(---- -UGCG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GG----C-A G-GC-GC-CG A-GGGU-AGG GCC-CG-UG- ACU-GGGG-C 3301 G---AAGUC- GUAA-CAAGG UAGCU-GUAC C(G....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS T.spFiji3A 4376 bp RNA RNA 02-JUL-1998 DEFINITION Thermus sp. str. Fiji 3A.1. ACCESSION No information KEYWORDS No information. SOURCE Thermus sp. str. Fiji 3A.1. ORGANISM Thermus sp. REFERENCE 1 AUTHORS Saul,D.J., Rodrigo,A.G., Reeves,R.A., Williams,L.C., Borges ,K.M., Morgan,H.W. and Bergquist,P.L. TITLE Phylogeny of twenty Thermus isolates constructed from 16S rRNA gene sequence data JOURNAL Int. J. Syst. Bacteriol. 43, 754-760 (1993) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: L10067|g452144 isolate_name= Fiji 3A.1 BASE COUNT 303 a 415 c 531 g 223 t 2904 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 GCUCAG-GGU -GAAC-GC-- UGGC-GGC-G -UGC-CU--A AGAC-AUGCA A-GUC-GUGC 121 G--GG----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- CCGCGGG-GU (--UU----- ---------- ---------- 241 --------U- -)AC-UUCGC GG-------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UC--- AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAC -GC-GUGGG- UGA--CCU-A C-CCGG---A -AGAG-G-GG 421 -GAC-AA-CC C--------- ------GG-- G(-GAAA-)U -UCGG-G--C UAAUCCC-CC 481 AU-GUG---- ---------- -------G-A CC-C--G--- ---CCC-(-- --------CU 541 UG-------- -)-GGG---- -U-GU----G UC--CAAA-- ---GGGU--- ---------- 601 --(------- ----UUU--- ---)------ ---------| ---ACC--C- G--CUU---- 661 ----CCGG-- AUG---G-|G CCCGC----- -GU|----CC C--AUCA-G- CUU-G---UU 721 GG-UG-GG-( GU-AAU-GG) -C-CCACC-A A|-GGC-GA- CGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGU ----GG-C-- CGG-C|C-AC -AGGGG-C-A 841 (CUGA-GA-C ACG)--GGCC -CCA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-U 901 AGG-AAUCUU C-CGCAAU-- GG-GC-(GCA A)-GCC-UGA CGGA|-GCGA CGCC-GC-UU 961 G-G-AG-G-A A-GAA--G-C CC(--UU-CG --)GG-GUGU AAA--CUCC| UGAA--C-CC 1021 --GG-GAC-- GA-AACC-CC --C------( -----GAGGA ---------) ------G-GG 1081 ---------- -------GAC U-GA-CGGU- A-CCG-G-GG U-AA--U-AG ---------C 1141 -GCCGGCC-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGCG-C-- 1201 GAG-CGUUAC CC-GGAUUCA -CU-GGGC|G UAAA-GGGC- GUG-UAG-GC -G|-GC-CU- 1261 G-GG-GCG|U CCC---AUGU G-AAA-GA-C CA-CGG-C(- UC-A)A-CCG -UG-G-GGG- 1321 -AGCG-UGGG A-UAC-GCUC A-GGCUA-GA CGG-----UG G-GA-GAGGG UGG-U|GGAA 1381 UU-CCCGGA- GUA-GCG(-G UGAAA)-UGC -GC-AGAU-A CC-GGGAGG- AACG-CCGA- 1441 -U-G-GC(-G AA-G)GCAG- -CCACCUG-- ---------- ---------- ---------G 1501 UCC--AC-CC GUGACG-CUG AG-G------ -------CG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CC- -GG(AUUA-G AUAC)-CCG- ----GGUA-G UC----CAC- G-CC-CU--A 1621 AAC-G-AUGC G--CG-CU-- -------A|G -GU-CU-CUG -GG------- ---------- 1681 -(-UU-U-)- ---------- ---------- ---------- ---------C -CUGGG-GGC 1741 CG--AA---- --GC-(UAA- ---C)G-CG- UUAA-GCGCG C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AGG-CC-UUG ACA-UG|--- -------C-U ---AGGG--- -AA----CCC 1981 -GGG-U--(- GAAA-)-GCC -U-GGGG--- UG-------- -CCCC----- --(GC----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------G A-)------- GGGG------ ----AG---| CCC-UA-GCA |---C|A--G 2161 GU-GC-UGCA UG|G-CCG-- UCG-UCA|-G C-U---CG-U |GC-C(-GUG A)-GGUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-CC-G |-CC--GUU- 2281 AG--UUGC-C AG-CGG---- ---------- ---------- ----(---UU ---CGG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CCG|G 2701 G-CA-CU-C- U-AAC-GG-G A-CU-G-CCC --GC(-G--A AA)-GCG-G- -GAGG-A-AG 2761 G-AG-GGG-A CG-ACG--UC -U-GGUC-AG CAU-G-GC-C CUUAC-G-GC -CU--GGGC- 2821 G-ACA-CA-C GUG--CUACA AUGCC-C-AC -UA--CAAAG CGA-U-G-C- CA-CCC-G(G 2881 -CAA)CGGG- ---------- GA-GCUAA-U CGCAA-AAAG -GU-G-GGC- CCAGUUCGGA 2941 U-UGGGGUC- (UGCAAC-C- C)-GACCCCA -UGAAGC-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGCCAU)-G CCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACG--- --CCA-UGGG A--GC-GGG- CU-CU-ACCC -GAA-G-UCG 3121 C-CGG-G--- -AG-CC---- ---------- ---------- -----(---- -UACG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GG----C-A G-GC-GC-CG A-GGGU-AGG GCC-CG-UG- ACU-GGGG-C 3301 G---AAGUC- GUAA-CAAGG UAGCU-GUAC C(G....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS T.thmoph27 4376 bp RNA RNA 02-JUL-1998 DEFINITION Thermus thermophilus str. HB27. ACCESSION No information KEYWORDS No information. SOURCE Thermus thermophilus str. HB27. ORGANISM Thermus thermophilus. REFERENCE 1 AUTHORS Saul,D.J., Rodrigo,A.G., Reeves,R.A., Williams,L.C., Borges ,K.M., Morgan,H.W. and Bergquist,P.L. TITLE Phylogeny of twenty Thermus isolates constructed from 16S rRNA gene sequence data JOURNAL Int. J. Syst. Bacteriol. 43, 754-760 (1993) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: L09659 isolate_name= HB27 BASE COUNT 304 a 417 c 531 g 220 t 2904 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 GCUCAG-GGU -GAAC-GC-- UGGC-GGC-G -UGC-CU--A AGAC-AUGCA A-GUC-GUGC 121 G--GG----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- CCGCGGG-GU (--UU----- ---------- ---------- 241 --------U- -)AC-UCCGU GG-------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UC--- AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAC -GC-GUGGG- UGA--CCU-A C-CCGG---A -AGAG-G-GG 421 -GAC-AA-CC C--------- ------GG-- G(-GAAA-)C -UCGG-G--C UAAUCCC-CC 481 AU-GUG---- ---------- -------G-A CC-C--G--- ---CCC-(-- --------CU 541 UG-------- -)-GGG---- -U-GU----G UC--CAAA-- ---GGGC--- ---------- 601 --(------- ----UUU--- ---)------ ---------| ---GCC--C- G--CUU---- 661 ----CCGG-- AUG---G-|G CCCGC----- -GU|----CC C--AUCA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAU-GG) -C-CCACC-A A|-GGC-GA- CGA------- -----CG-GG 781 U-AG-C-CG| -G-UCU--(G -AGA)-GGAU ----GG-C-- CGG-C|C-AC -AGGGG-C-A 841 (CUGA-GA-C ACG)--GGCC -CCA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-U 901 AGG-AAUCUU C-CGCAAU-- GG-GC-(GCA A)-GCC-UGA CGGA|-GCGA CGCC-GC-UU 961 G-G-AG-G-A A-GAA--G-C CC(--UU-CG --)GG-GUGU AAA--CUCC| UGAA--C-CC 1021 --GG-GAC-- GA-AACC-CC --C------( -----GAGGA ---------) ------G-GG 1081 ---------- -------GAC U-GA-CGGU- A-CCG-G-GG U-AA--U-AG ---------C 1141 -GCCGGCC-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGCG-C-- 1201 GAG-CGUUAC CC-GGAUUCA -CU-GGGC|G UAAA-GGGC- GUG-UAG-GC -G|-GC-CU- 1261 G-GG-GCG|U CCC---AUGU G-AAA-GA-C CA-CGG-C(- UC-A)A-CCG -UG-G-GGG- 1321 -AGCG-UGGG A-UAC-GCUC A-GGCUA-GA CGG-----UG G-GA-GAGGG UGG-U|GGAA 1381 UU-CCCGGA- GUA-GCG(-G UGAAA)-UGC -GC-AGAU-A CC-GGGAGG- AACG-CCGA- 1441 -U-G-GC(-G AA-G)GCAG- -CCACCUG-- ---------- ---------- ---------G 1501 UCC--AC-CC GUGACG-CUG AG-G------ -------CG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CC- -GG(AUUA-G AUAC)-CCG- ----GGUA-G UC----CAC- G-CC-CU--A 1621 AAC-G-AUGC G--CG-CU-- -------A|G -GU-CU-CUG -GG------- ---------- 1681 -(-UC-U-)- ---------- ---------- ---------- ---------C -CUGGG-GGC 1741 CG--AA---- --GC-(UAA- ---C)G-CG- UUAA-GCGCG C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AGG-CC-UUG ACA-UG|--- -------C-U ---AGGG--- -AA----CCC 1981 -GGG-U--(- GAAA-)-GCC -U-GGGG--- UG-------- -CCCC----- --(GC----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------G A-)------- GGGG------ ----AG---| CCC-UA-GCA |---C|A--G 2161 GU-GC-UGCA UG|G-CCG-- UCG-UCA|-G C-U---CG-U |GC-C(-GUG A)-GGUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-CC-G |-CC--GUU- 2281 AG--UUGC-C AG-CGG---- ---------- ---------- ----(---UU ---CGG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CCG|G 2701 G-CA-CU-C- U-AAC-GG-G A-CU-G-CCC --GC(-G--A AA)-GCG-G- -GAGG-A-AG 2761 G-AG-GGG-A CG-ACG--UC -U-GGUC-AG CAU-G-GC-C CUUAC-G-GC -CU--GGGC- 2821 G-ACA-CA-C GUG--CUACA AUGCC-C-AC -UA--CAAAG CGA-U-G-C- CA-CCC-G(G 2881 -CAA)CGGG- ---------- GA-GCUAA-U CGCAA-AAAG -GU-G-GGC- CCAGUUCGGA 2941 U-UGGGGUC- (UGCAAC-C- C)-GACCCCA -UGAAGC-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGCCAU)-G CCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACG--- --CCA-UGGG A--GC-GGG- CU-CU-ACCC -GAA-G-UCG 3121 C-CGG-G--- -AG-CC---- ---------- ---------- -----(---- -UACG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GG----C-A G-GC-GC-CG A-GGGU-AGG GCC-CG-UG- ACU-GGGG-C 3301 G---AAGUC- GUAA-CAAGG UAGCU-GUAC C(G....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS T.flavus2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Thermus flavus str. AT-62. ACCESSION No information KEYWORDS No information. SOURCE Thermus flavus str. AT-62. ORGANISM Thermus flavus. REFERENCE 1 AUTHORS Saul,D.J., Rodrigo,A.G., Reeves,R.A., Williams,L.C., Borges,K .M., Morgan,H.W. and Bergquist,P.L. TITLE Phylogeny of twenty Thermus isolates constructed from 16S rRNA gene sequence data JOURNAL Int. J. Syst. Bacteriol. 43, 754-760 (1993) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: L09660 isolate_name= AT-62 BASE COUNT 304 a 417 c 531 g 220 t 2904 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 GCUCAG-GGU -GAAC-GC-- UGGC-GGC-G -UGC-CU--A AGAC-AUGCA A-GUC-GUGC 121 G--GG----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- CCGCGGG-GU (--UU----- ---------- ---------- 241 --------U- -)AC-UCCGU GG-------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UC--- AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAC -GC-GUGGG- UGA--CCU-A C-CCGG---A -AGAG-G-GG 421 -GAC-AA-CC C--------- ------GG-- G(-GAAA-)C -UCGG-G--C UAAUCCC-CC 481 AU-GUG---- ---------- -------G-A CC-C--G--- ---CCC-(-- --------CU 541 UG-------- -)-GGG---- -U-GU----G UC--CAAA-- ---GGGC--- ---------- 601 --(------- ----UUU--- ---)------ ---------| ---GCC--C- G--CUU---- 661 ----CCGG-- AUG---G-|G CCCGC----- -GU|----CC C--AUCA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAU-GG) -C-CCACC-A A|-GGC-GA- CGA------- -----CG-GG 781 U-AG-C-CG| -G-UCU--(G -AGA)-GGAU ----GG-C-- CGG-C|C-AC -AGGGG-C-A 841 (CUGA-GA-C ACG)--GGCC -CCA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-U 901 AGG-AAUCUU C-CGCAAU-- GG-GC-(GCA A)-GCC-UGA CGGA|-GCGA CGCC-GC-UU 961 G-G-AG-G-A A-GAA--G-C CC(--UU-CG --)GG-GUGU AAA--CUCC| UGAA--C-CC 1021 --GG-GAC-- GA-AACC-CC --C------( -----GAGGA ---------) ------G-GG 1081 ---------- -------GAC U-GA-CGGU- A-CCG-G-GG U-AA--U-AG ---------C 1141 -GCCGGCC-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGCG-C-- 1201 GAG-CGUUAC CC-GGAUUCA -CU-GGGC|G UAAA-GGGC- GUG-UAG-GC -G|-GC-CU- 1261 G-GG-GCG|U CCC---AUGU G-AAA-GA-C CA-CGG-C(- UC-A)A-CCG -UG-G-GGG- 1321 -AGCG-UGGG A-UAC-GCUC A-GGCUA-GA CGG-----UG G-GA-GAGGG UGG-U|GGAA 1381 UU-CCCGGA- GUA-GCG(-G UGAAA)-UGC -GC-AGAU-A CC-GGGAGG- AACG-CCGA- 1441 -U-G-GC(-G AA-G)GCAG- -CCACCUG-- ---------- ---------- ---------G 1501 UCC--AC-CC GUGACG-CUG AG-G------ -------CG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CC- -GG(AUUA-G AUAC)-CCG- ----GGUA-G UC----CAC- G-CC-CU--A 1621 AAC-G-AUGC G--CG-CU-- -------A|G -GU-CU-CUG -GG------- ---------- 1681 -(-UC-U-)- ---------- ---------- ---------- ---------C -CUGGG-GGC 1741 CG--AA---- --GC-(UAA- ---C)G-CG- UUAA-GCGCG C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AGG-CC-UUG ACA-UG|--- -------C-U ---AGGG--- -AA----CCC 1981 -GGG-U--(- GAAA-)-GCC -U-GGGG--- UG-------- -CCCC----- --(GC----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------G A-)------- GGGG------ ----AG---| CCC-UA-GCA |---C|A--G 2161 GU-GC-UGCA UG|G-CCG-- UCG-UCA|-G C-U---CG-U |GC-C(-GUG A)-GGUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-CC-G |-CC--GUU- 2281 AG--UUGC-C AG-CGG---- ---------- ---------- ----(---UU ---CGG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CCG|G 2701 G-CA-CU-C- U-AAC-GG-G A-CU-G-CCC --GC(-G--A AA)-GCG-G- -GAGG-A-AG 2761 G-AG-GGG-A CG-ACG--UC -U-GGUC-AG CAU-G-GC-C CUUAC-G-GC -CU--GGGC- 2821 G-ACA-CA-C GUG--CUACA AUGCC-C-AC -UA--CAAAG CGA-U-G-C- CA-CCC-G(G 2881 -CAA)CGGG- ---------- GA-GCUAA-U CGCAA-AAAG -GU-G-GGC- CCAGUUCGGA 2941 U-UGGGGUC- (UGCAAC-C- C)-GACCCCA -UGAAGC-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGCCAU)-G CCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACG--- --CCA-UGGG A--GC-GGG- CU-CU-ACCC -GAA-G-UCG 3121 C-CGG-G--- -AG-CC---- ---------- ---------- -----(---- -UACG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GG----C-A G-GC-GC-CG A-GGGU-AGG GCC-CG-UG- ACU-GGGG-C 3301 G---AAGUC- GUAA-CAAGG UAGCU-GUAC C(G....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS T.thmophl2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Thermus thermophilus str. HB-8 ATCC 27634. ACCESSION No information KEYWORDS No information. SOURCE Thermus thermophilus str. HB-8 ATCC 27634. ORGANISM Thermus thermophilus. REFERENCE 1 AUTHORS Bateson,M.M., Thibault,K.J. and Ward,D.M. TITLE Comparative Analysis of 16S Ribosomal RNA Sequences of Thermus Species JOURNAL Syst. Appl. Microbiol. 13, 8-13 (1990) STANDARD No information COMMENTS Organism information Culture collection: ATCC 27634 Sequence information (bases 1 to 4376) Corresponding GenBank entry: X58342|g48243 ATCC 27634 = NCIMB 11244 = DSM 579 isolate_name= HB-8 BASE COUNT 151 a 188 c 243 g 103 t 3691 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... ...CUU---- 661 ----CCGG-- AUG---G-|G CCCGC----- -GU|----CC C--AUNA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAU-GG) -C-CCACH-W A|-GGC-GA- CGA------- -----HG-GG 781 U-AG-C-CG| -G-UCU--(G -AGA)-GGAU ----GG-C-- CGG-C|C-AC -AGGGG-C-A 841 (CUGA-GA-H WCG)--GGCC -NNN-C-UHN -(NNHG)--G GAG-GC-AG- C-A---GU-U 901 AGG-AAUCUU C-CGCAAU-- GG-GC-(GCA A)-GCH-UGA CGGA|-GCGA CGCH-NC-UU 961 G-G-AG-G-A A-GAA--G-C C-(--UU-CG --)GG-GUGU NAA--CUCC| UGAA--C-CC 1021 --GG-GAC-- GA-AACC-CC --N------( -----GANGA ---------) ------G-GG 1081 ---------- -------GNC U-GA-CGGU- NNCCG-G-GG U-AA--U-AG ---------C 1141 -GCCGGC... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|...A 1381 UU-HCCGGA- GUA-GCG(-G UGAAA)-UGC -GC-AGAU-A CC-GGGWGG- AANS-SCGA- 1441 -U-G-GC(-G AA-G)GCAG- -CCACYUK-- ---------- ---------- ---------G 1501 UCC--AC-CC GUGACG-CUG AG-G------ -------CG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CC- -GG(AUUA-G AUAC)-CCG- ----GGUW-G UC----CAN- G-CC-CU--N 1621 AAC-G-AUGC G--CG-CU-- -------A|G -GU-CU-CUN -GG....... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GY AACCC-CC-G |-CC--GUU- 2281 AG--UUGC-Y AG-CGG---- ---------- ---------- ----(---UU ---CGG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CCG|G 2701 G-CA-CU-C- U-AAC-GGGU A-CU-G-GCC --G-(----A AA)-NCG-G- -KAGG-A-AG 2761 G-AG-GGG-A CG-ACG--UC -U-GGUC-AG CAU-G----C CUUAC-G-GC -CU--GGGC- 2821 G-ACA-CA-C GUG--CUACA AUGCC-C-AC -UA--CAAAG CGA-U-G-C- CA-CCC-G(G 2881 -CAA)CGGG- ---------- GA-S-UAA-U CGCAN-WAAG -GU-G-GGN- CCAGUUCGGA 2941 U-UGGGGUC- (UGCAAC-C- C)-GACCCNA -UGAAGC-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGCCAU)-G CCG-CGGUG- AAUAC-GU.. .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS T.flavus 4376 bp RNA RNA 02-JUL-1998 DEFINITION Thermus flavus str. AT-62 ATCC 33923. ACCESSION No information KEYWORDS No information. SOURCE Thermus flavus str. AT-62 ATCC 33923. ORGANISM Thermus flavus. REFERENCE 1 AUTHORS Bateson,M.M., Thibault,K.J. and Ward,D.M. TITLE Comparative Analysis of 16S Ribosomal RNA Sequences of Thermus Species JOURNAL Syst. Appl. Microbiol. 13, 8-13 (1990) STANDARD No information COMMENTS Organism information Culture collection: ATCC 33923 Sequence information (bases 1 to 4376) Corresponding GenBank entry: X58341 isolate_name= AT-62 BASE COUNT 156 a 206 c 263 g 92 t 3659 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... ...CUU---- 661 ----CCGG-- AUG---G-|G CCCGC----- -GU|----CC C--AUNA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAU-GG) -C-CCACC-A A|-GGC-GA- CGA------- -----CG-GG 781 U-AG-C-CG| -G-UCU--(G -AGA)-GGAU ----GG-C-- CGG-C|C-AC -AGGGG-C-A 841 (CUGA-GA-H HHG)--GGCC -NNN-C-UCN -(NNCG)--G GAG-GC-AG- C-A---GU-U 901 AGG-AAUCUU C-CGCAAU-- GG-GC-(GCA A)-GCC-WGA CGGA|-GCGA CGCC-GC-WW 961 G-G-AG-G-A A-GAA--G-C NN(--NN--G --)GG-GNGU AAA--CNCC| NNRA--C-CC 1021 --GG-NNC-- GA-AACC-CN --N------( -----GAHGG A--------) ------G-GG 1081 ---------- -------NNC N-SA-CGGN- NNCCG-G-GG N-NA--N-NG ---------C 1141 -GCCGGC... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .AGCG-UGGG A-UAC-GCUC A-GGCUA-GA CGG-----UG G-GA-NAGGG UNG-U|NGHA 1381 UU-CCCGGA- GUA-GCG(-G UGAAA)-UGC -GC-AGAU-A CC-GGGAGG- AACG-CCGA- 1441 -U-G-GC(-G AA-G)GCAG- -CCACCUN-- ---------- ---------- ---------G 1501 UCC--AC-CC GUGACG-CUG AG-G------ -------CG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CC- -GG(AUUA-G AUAC)-CCG- ----GGUA-G UC----CAC- G-CC-CY--N 1621 AAC-G-AUGC G--CG-CU-- -------A|G -GU-CU-CNN -GG....... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)....GU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GH AACCC-CC-G |-CC--GUU- 2281 AG--UUGC-C AG-CGG---- ---------- ---------- ----(---UU ---CGG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CCG|G 2701 G-CA-CU-C- U-AAC-GG-G A-CU-G-C-- --GC(-G--A WW)-GCG-G- -GAGG-A-AG 2761 G-HG-GGG-A CG-ACG--UC -U-NGUC-AG CAU-N-G--C CUUAC-G-GC -CU--GGGC- 2821 G-ACA-CA-C GUG--CUACA AUGCC-C-AC -UA--CAAAG CGA-Y-G-C- CA-CCC-G(G 2881 -CAN)CGGG- ---------- GA-S-UAA-U CGCAN-AAAG -GY-G-GGH- CCAGUUCGGA 2941 U-UGGGGUC- (UGCAAC-C- C)-SACCCCA -NGAAGC-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GSA-(UC -AGCCAU)-G CCG-CGGNS- AAUAC-GNN- CCC-GGG... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS T.thmophl 4376 bp RNA RNA 02-JUL-1998 DEFINITION Thermus thermophilus str. HB-8. ACCESSION No information KEYWORDS No information. SOURCE Thermus thermophilus str. HB-8. ORGANISM Thermus thermophilus. REFERENCE 1 AUTHORS Hartmann,R.K., Wolters,J., Kroeger,B., Schultze,S., Specht,T. and Erdmann,V.A. TITLE Does Thermus represent another deep eubacterial branching? JOURNAL Syst. Appl. Microbiol. 11, 243-249 (1989) STANDARD No information REFERENCE 2 AUTHORS Hartmann,R.K. and Erdmann,V.A. TITLE Thermus thermophilus 16S rRNA is transcribed from an isolated transcription unit JOURNAL J. Bacteriol. 171, 2933-2941 (1989) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: M26923 (bases 557 to 2331) isolate_name= HB-8 BASE COUNT 311 a 428 c 545 g 237 t 2855 others ORIGIN 1 .......... .......... .......... ...UUGUUGG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GGU -GAAC-GC-- UGGC-GGC-G -UGC-CU--A AGAC-AUGCA A-GUC-GUGC 121 G--GG----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- CCGCGGG-GU (--UU----- ---------- ---------- 241 --------U- -)AC-UCCGU GG-------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UC--- AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAC -GC-GUGGG- UGA--CCU-A C-CCGG---A -AGAG-G-GG 421 -GAC-AA-CC C--------- ------GG-- G(-GAAA-)C -UCGG-G--C UAAUCCC-CC 481 AU-GUG---- ---------- -------G-A CC-C--G--- ---CCC-(-- --------CU 541 UG-------- -)-GGG---- -U-GU----G UC--CAAA-- ---GGGC--- ---------- 601 --(------- ----UUU--- ---)------ ---------| ---GCC--C- G--CUU---- 661 ----CCGG-- AUG---G-|G CCCGC----- -GU|----CC C--AUCA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAU-GG) -C-CCACC-A A|-GGC-GA- CGA------- -----CG-GG 781 U-AG-C-CG| -G-UCU--(G -AGA)-GGAU ----GG-C-- CGG-C|C-AC -AGGGG-C-A 841 (CUGA-GA-C ACG)--GGCC -CCA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-U 901 AGG-AAUCUU C-CGCAAU-- GG-GC-(GCA A)-GCC-UGA CGGA|-GCGA CGCC-GC-UU 961 G-G-AG-G-A A-GAA--G-C CC(--UU-CG --)GG-GUGU AAA--CUCC| UGAA--C-CC 1021 --GG-GAC-- GA-AACC-CC --C------( -----GACGA ---------) ------G-GG 1081 ---------- -------GAC U-GA-CGGU- A-CCG-G-GG U-AA--U-AG ---------C 1141 -GCCGGCC-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGCG-C-- 1201 GAG-CGUUAC CC-GGAUUCA -CU-GGGC|G UAAA-GGGC- GUG-UAG-GC -G|-GC-CU- 1261 G-GG-GCG|U CCC---AUGU G-AAA-GA-C CA-CGG-C(- UC-A)A-CCG -UG-G-GGG- 1321 -AGCG-UGGG A-UAC-GCUC A-GGCUA-GA CGG-----UG G-GA-GAGGG UGG-U|GGAA 1381 UU-CCCGGA- GUA-GCG(-G UGAAA)-UGC -GC-AGAU-A CC-GGGAGG- AACG-CCGA- 1441 -U-G-GC(-G AA-G)GCAG- -CCACCUG-- ---------- ---------- ---------G 1501 UCC--AC-CC GUGACG-CUG AG-G------ -------CG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CC- -GG(AUUA-G AUAC)-CCG- ----GGUA-G UC----CAC- G-CC-CU--A 1621 AAC-G-AUGC G--CG-CU-- -------A|G -GU-CU-CUG -GG------- ---------- 1681 -(-UC-U-)- ---------- ---------- ---------- ---------C -CUGGG-GGC 1741 CG--AA---- --GC-(UAA- ---C)G-CG- UUAA-GCGCG C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AGG-CC-UUG ACA-UG|--- -------C-U ---AGGG--- -AA----CCC 1981 -GGG-U--(- GAAA-)-GCC -U-GGGG--- UG-------- -CCCC----- --(GC----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------G A-)------- GGGG------ ----AG---| CCC-UA-GCA |---C|A--G 2161 GU-GC-UGCA UG|G-CCG-- UCG-UCA|-G C-U---CG-U |GC-C(-GUG A)-GGUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-CC-G |-CC--GUU- 2281 AG--UUGC-C AG-CGG---- ---------- ---------- ----(---UU ---CGG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CCG|G 2701 G-CA-CU-C- U-AAC-GG-G A-CU-G-CCC --GC(-G--A AA)-GCG-G- -GAGG-A-AG 2761 G-AG-GGG-A CG-ACG--UC -U-GGUC-AG CAU-G-GC-C CUUAC-G-GC -CU--GGGC- 2821 G-ACA-CA-C GUG--CUACA AUGCC-C-AC -UA--CAAAG CGA-U-G-C- CA-CCC-G(G 2881 -CAA)CGGG- ---------- GA-GCUAA-U CGCAA-AAAG -GU-G-GGC- CCAGUUCGGA 2941 U-UGGGGUC- (UGCAAC-C- C)-GACCCCA -UGAAGC-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGCCAU)-G CCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACG--- --CCA-UGGG A--GC-GGG- CU-CU-ACCC -GAA-G-UCG 3121 C-CGG-G--- -AG-CC---- ---------- ---------- -----(---- -UACG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GG----C-A G-GC-GC-CG A-GGGU-AGG GCC-CG-UG- ACU-GGGG-C 3301 G---AAGUC- GUAA-CAAGG UAGCU-GUAC C(GGA-A)GG UGCGGC--UG GAUCACCUCC 3361 UUUC|U~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS T.thermoph 4376 bp RNA RNA 02-JUL-1998 DEFINITION Thermus thermophilus str. HB-8 ATCC 27634. ACCESSION No information KEYWORDS No information. SOURCE Thermus thermophilus str. HB-8 ATCC 27634. ORGANISM Thermus thermophilus. REFERENCE 1 AUTHORS Murzina,N.V., Vorozheykina,D.P. and Marvienko,N.I. TITLE Nucleotide sequence of Thermus thermophilus HB8 gene coding 16S rRNA JOURNAL Nucleic Acids Res. 16, 8172-8172 (1988) STANDARD No information COMMENTS Organism information Culture collection: ATCC 27634 Sequence information (bases 1 to 4376) Corresponding GenBank entry: X07998 ATCC 27634 = NCIMB 11244 = DSM 579 isolate_name= HB-8 BASE COUNT 310 a 425 c 544 g 236 t 2861 others ORIGIN 1 .......... .......... .......... ...UUGUUGG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GGU -GAAC-GC-- UGGC-GGC-G -UGC-CU--A AGAC-AUGCA A-GUC-GUGC 121 G--GG----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- CCGCGGG-GU (--UU----- ---------- ---------- 241 --------U- -)AC-UCCGU GG-------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UC--- AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAC -GC-GUGGG- UGA--CCU-A C-CCGG---A -AGAG-G-GG 421 -GAC-AA-CC C--------- ------GG-- G(-GAAA-)C -UCGG-G--C UAAUCCC-CC 481 AU-GUG---- ---------- -------G-A CC-C--G--- ---CCC-(-- --------CU 541 UG-------- -)-GGG---- -U-GU----G UC--CAAA-- ---GGGC--- ---------- 601 --(------- ----UUU--- ---)------ ---------| ---GCC--C- G--CUU---- 661 ----CCGG-- AUG---G-|G CCCGC----- -GU|----CC C--AUCA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAU-GG) -C-CCACC-A A|-GGC-GA- CGA------- -----CG-GG 781 U-AG-C-CG| -G-UCU--(G -AGA)-GGAU ----GG-C-- CGG-C|C-AC -AGGGG-C-A 841 (CUGA-GA-C ACG)--GGCC -CCA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-U 901 AGG-AAUCUU C-CGCAAU-- GG-GC-(GCA A)-GCC-UGA CGGA|-GCGA CGCC-GC-UU 961 G-G-AG-G-A A-GAA--G-C CC(--UU-CG --)GG-GUGU AAA--CUCC| UGAA--C-CC 1021 --GG-GAC-- GA-AACC-CC --C------( -----GACGA ---------) ------G-GG 1081 ---------- -------GAC U-GA-CGGU- A-CCG-G-GG U-AA--U-AG ---------C 1141 -GCCGGCC-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGCG-C-- 1201 GAG-CGUUAC CC-GGAUUCA -CU-GGGC|G UAAA-GGGC- GUG-UAG-GC -G|-GC-CU- 1261 G-GG-GCG|U CCC---AUGU G-AAA-GA-C CA-CGG-C(- UC-A)A-CCG -UG-G-GGG- 1321 -AGCG-UGGG A-UAC-GCUC A-GGCUA-GA CGG-----UG G-GA-GAGGG UGG-U|GGAA 1381 UU-CCCGGA- GUA-GCG(-G UGAAA)-UGC -GC-AGAU-A CC-GGGAGG- AACG-CCGA- 1441 -U-G-GC(-G AA-G)GCAG- -CCACCUG-- ---------- ---------- ---------G 1501 UCC--AC-CC GUGACG-CUG AG-G------ -------CG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CC- -GG(AUUA-G AUAC)-CCG- ----GGUA-G UC----CAC- G-CC-CU--A 1621 AAC-G-AUGC G--CG-CU-- -------A|G -GU-CU-CUG -GG------- ---------- 1681 -(-UC-U-)- ---------- ---------- ---------- ---------C -CUGGG-GGC 1741 CG--AA---- --GC-(UAA- ---C)G-CG- UUAA-GCGCG C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AGG-CC-UUG ACA-UG|--- -------C-U ---AGGG--- -AA----CCC 1981 -GGG-U--(- GAAA-)-GCC -U-GGGG--- UG-------- -CCC------ --(GC----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------G A-)------- -GGG------ ----AG---| CCC-UA-GCA |---C|A--G 2161 GU-GC-UGCA UG|G-CCG-- UCG-UCA|-G C-U---CG-U |GC-C(-GUG A)-GGUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-CC-G |-CC--GUU- 2281 AG--UUGC-C AG-CGG---- ---------- ---------- ----(---UU ---CGG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CCG|G 2701 G-CA-CU-C- U-AAC-GG-G A-CU-G-CCC --GC(-G--A AA)-GCG-G- -GAGG-A-AG 2761 G-AG-GGG-A CG-ACG--UC -U-GGUC-AG CAU-G-GC-C CUUAC-G-GC -CU--GGGC- 2821 G-ACA-CA-C GUG--CUACA AUGCC-C--- -UA--CAAAG CGA-U-G-C- CA-CCC-G(G 2881 -CAA)CGGG- ---------- GA-GCUAA-U CGCAA-AAAG -GU-G-GGC- CCAGUUCGGA 2941 U-UGGGGUC- (UGCAAC-C- C)-GACCCCA -UGAAGC-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGCCAU)-G CCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACG--- --CCA-UGGG A--GC-GGG- CU-CU-ACCC -GAA-G-UCG 3121 C-CGG-G--- -AG-CC---- ---------- ---------- -----(---- -UACG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GG----C-A G-GC-GC-CG A-GGGU-AGG GCC-CG-UG- ACU-GGGG-C 3301 G---AAGUC- GUAA-CAAGG UAGCU-GUAC C(GGA-A)GG UGCGGC--UG GAUCACCUCC 3361 UUU.|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS 2.4.2.1.2 4376 bp RNA RNA 09-JAN-1999 DEFINITION 2.4.2.1.2 T.FILIFORMIS_SUBGROUP. ACCESSION No information KEYWORDS No information. SOURCE 2.4.2.1.2 T.FILIFORMIS_SUBGROUP. ORGANISM 2.4.2.1.2 T.FILIFORMIS_SUBGROUP. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 0 a 0 c 0 g 0 t 4376 others ORIGIN 1 x~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~-- ------~~~~ 541 ~~~~~~---- -~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~---~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- 1681 -(~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- -------~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~----~~~ 1981 ~~~~-~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~--- --~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~------ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~---~~ ---~~~--~~ 2341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- 3181 ---------- ---------- ---------- ------~)~~ ~~~~~~~~~~ ~~~~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS T.filifor2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Thermus filiformis.. ACCESSION No information KEYWORDS No information. SOURCE Thermus filiformis. ORGANISM Thermus filiformis. REFERENCE 1 AUTHORS Saul,D.J., Rodrigo,A.G., Reeves,R.A., Williams,L.C., Borges ,K.M., Morgan,H.W. and Bergquist,P.L. TITLE Phylogeny of twenty Thermus isolates constructed from 16S rRNA gene sequence data JOURNAL Int. J. Syst. Bacteriol. 43, 754-760 (1993) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: L09667 BASE COUNT 309 a 386 c 537 g 243 t 2901 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 GCUCAG-GGU -GAAC-GC-- UGGC-GGC-G -UGC-CU--A AGAC-AUGCA A-GUC-GUGC 121 G--GG----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- CUGCGGG-GU (--UU----- ---------- ---------- 241 --------U- -)AC-UCCGU GG-------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UC--- AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAC -GC-GUGGG- UGA--CCU-A C-CUGG---A -AGAG-G-GG 421 -GAC-AA-CC U--------- ------GG-- G(-GAAA-)C -UCGG-G--C UAAUCCC-CC 481 AU-GUG---- ---------- -------G-U CG-U--G--- ---CCC-(-- --------UU 541 UG-------- -)-GGG---- -U-GC----G AU--UAAA-- ---GGGU--- ---------- 601 --(------- ---GAAG--- ---)------ ---------| --AGCC--C- G--CUU---- 661 ----CCGG-- AUG---G-|G CCCGC----- -GU|----CC C--AUCA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAU-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----CG-GG 781 U-AG-C-CG| -G-UCU--(G -AGA)-GGAU ----GG-C-- CGG-C|C-AC -AGGGG-C-A 841 (CUGA-GA-C ACG)--GGCC -CCA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-U 901 AGG-AAUCUU C-CGCAAU-- GG-GC-(GAA A)-GCC-UGA CGGA|-GCGA CGCC-GC-UU 961 G-G-AG-G-A G-GAA--G-C CC(--UU-CG --)GG-GUGU AAA--CUCC| UGAA--C-CC 1021 --AG-GAC-- GA-AAUC-CC --U------( -----GAUGA ---------) ------G-GG 1081 ---------- -------GGA U-GA-CGGU- A-CUG-G-GG U-AA--U-AG ---------C 1141 -GCCGGCC-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGCG-C-- 1201 GAG-CGUUAC CC-GGAUUUA -CU-GGGC|G UAAA-GGGC- GUG-UAG-GC -G|-GC-CU- 1261 G-GU-GCG|U CUG---GCGU U-AAA-GA-C CG-CGG-C(- UC-A)A-CCG -CG-G-GGG- 1321 -UGCG-CUGG A-UAC-GGCC G-GGCUA-GA CGG-----UG G-GA-GAGGG UGG-U|GGAA 1381 UU-CCCGGA- GUA-GCG(-G UGAAA)-UGC -GC-AGAU-A CC-GGGAGG- AACG-CCGA- 1441 -U-G-GC(-G AA-G)GCAG- -CCACCUG-- ---------- ---------- ---------G 1501 UCC--AC-CC GUGACG-CUG AG-G------ -------CG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CC- -GG(AUUA-G AUAC)-CCG- ----GGUA-G UC----CAC- G-CC-CU--A 1621 AAC-G-AUGC G--CA-CU-- -------A|G -GU-CU-CUG -GG------- ---------- 1681 -(-UU-A-)- ---------- ---------- ---------- ---------U -CUGGG-GGC 1741 CG--AA---- --GC-(CAA- ---C)G-CG- UUAA-GUGCG C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AGG-CC-UUG ACA-UG|--- -------C-U ---AGGG--- -AA----CCU 1981 -GGG-U--(- GAAA-)-GCC -U-GGGG--- UG-------- -CCCC----- --(GC----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------G A-)------- GGGG------ ----AG---| CCU-UA-GCA |---C|A--G 2161 GU-GC-UGCA UG|G-CCG-- UCG-UCA|-G C-U---CG-U |GC-C(-GUG A)-GGUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-CU-G |-CC--CCU- 2281 AG--UUAC-C AG-CGG---- ---------- ---------- ---G(---UG ---AAG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CCG|G 2701 G-GA-CU-C- U-AGG-GG-G A-CU-G-CCC --GC(-G--A AA)-GCG-G- -GAGG-A-AG 2761 G-CG-GGG-A UG-ACG--UC -U-GGUC-AU CAU-G-GC-C CUUAC-G-GC -CU--GGGC- 2821 G-ACA-CA-C GUG--CUACA AUGCC-U-AC -UA--CAGAG CGA-U-G-C- GA-CCU-G(G 2881 -UGA)CAGG- ---------- GA-GCGAA-U CGCAA-AAAG -GU-A-GGC- UCAGUUCGGA 2941 U-UGCAGUC- (UGCAAC-U- C)-GACUGCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGCCAU)-G CCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACG--- --CCA-UGGG A--GC-GGG- UU-CU-ACCC -GAA-G-UCG 3121 C-CGG-G--- -AG-CC---- ---------- ---------- -----(---- -UAAG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GG----C-A G-GC-GC-CG A-GGGU-AGG GCU-CG-UG- ACU-GGGG-C 3301 G---AAGUC- GUAA-CAAGG UAGCU-GUAC C(G....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS T.filiform 4376 bp RNA RNA 02-JUL-1998 DEFINITION Thermus filiformis str. WAI 33 A1 ATCC 43280. ACCESSION No information KEYWORDS No information. SOURCE Thermus filiformis str. WAI 33 A1 ATCC 43280. ORGANISM Thermus filiformis. REFERENCE 1 AUTHORS Bateson,M.M., Thibault,K.J. and Ward,D.M. TITLE Comparative Analysis of 16S Ribosomal RNA Sequences of Thermus Species JOURNAL Syst. Appl. Microbiol. 13, 8-13 (1990) STANDARD No information COMMENTS Organism information Culture collection: ATCC 43280 Sequence information (bases 1 to 4376) Corresponding GenBank entry: X58345 isolate_name= WAI 33 A1 BASE COUNT 155 a 174 c 240 g 99 t 3708 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... ...CUU---- 661 ----CCNN-- AUG---G-|G CCCGC----- -GU|----CC C--AUHA-G- CUA-G---WW 721 GG-UG-GG-( GU-AAU-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----CG-GG 781 U-AG-C-CG| -G-UCU--(G -AGA)-GGAU ----GG-C-- CGG-C|C-AC -AGGGG-C-A 841 (CUGA-GA-C ACG)--GGCN -NNN-C-UNN -(NNCG)--G GAG-GC-AG- C-A---GU-U 901 AGG-AAUCUU C-CGCAAU-- GG-GC-(GAA A)-GCC-UGA CGGA|-GCGA CGCC-GC-NN 961 G-G-AG-G-A G-GAA--N-N CN(--N--CG --)GG-GUGU AAA--CUCC| UGAA--C-CC 1021 --AG-GAC-- GA-AAUC-CN --N------( -----GANNN ---------) ------N-GG 1081 ---------- -------GGA N-GA-CGGU- A-CNG-G-GG U-AA--N-AG ---------N 1141 -GCNNGC... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......GGG HGG-U|GGAA 1381 UU-CCCGGA- GUA-GCG(-G UGAAA)-UGC -GC-AGAU-A CH-GGGAGG- AA-G-CCGA- 1441 -U-G-GC(-G AA-G)GCAG- -CCACCUK-- ---------- ---------- ---------G 1501 UCC--AC-CC GUGACG-CUG AG-G------ -------CG- C-GAAA-GC- GH-GGG-GA- 1561 GC-AAA-CC- -GG(AUUA-G AUAC)-CCG- ----GGUA-G UC----CAN- G-CC-CU--A 1621 AAC-G-AUGC G--CA-CU-- -------A|G -GU-CW-HNN -GG....... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-CU-N |-CC--CCU- 2281 AGU-UWWC-C AG-CGG---- ---------- ---------- ---G(---WG ---WWN--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----HHG|G 2701 N-NW-CU-N- N-NGG-GN-K A-CU-G-CGC --GW(-W--A UG)-CWW-G- -GWKG-A-WG 2761 G-UG-GGG-A UG-ACG--UC -U-NGUC-AU CAW-U-KG-C CUUAC-G-GC -CN--NGGC- 2821 G-ACA-CA-C GUG--CUACA AUGCC-U-AC -UA--CAGAG CGA-U-G-C- GA-CCU-G(G 2881 -UGA)NAGG- ---------- GA-GCGAA-U CGCAA-AAAG -GU-N-GGC- UCAGUUCGGA 2941 U-UGCAGUC- (UGCAAC-U- N)-GACUNCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGCCAU)-G CCG-CGGUG- AAUAC-G... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS T.spW28 4376 bp RNA RNA 02-JUL-1998 DEFINITION Thermus sp. str. W28 A.1. ACCESSION No information KEYWORDS No information. SOURCE Thermus sp. str. W28 A.1. ORGANISM Thermus sp. REFERENCE 1 AUTHORS Saul,D.J., Rodrigo,A.G., Reeves,R.A., Williams,L.C., Borges,K.M ., Morgan,H.W. and Bergquist,P.L. TITLE Phylogeny of twenty Thermus isolates constructed from 16S rRNA gene sequence data JOURNAL Int. J. Syst. Bacteriol. 43, 754-760 (1993) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: L10068|g452145 isolate_name= W28 A.1 BASE COUNT 309 a 387 c 537 g 242 t 2901 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 GCUCAG-GGU -GAAC-GC-- UGGC-GGC-G -UGC-CU--A AGAC-AUGCA A-GUC-GUGC 121 G--GG----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- CCGCGGG-GU (--UU----- ---------- ---------- 241 --------U- -)AC-UUCGC GG-------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UC--- AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAC -GC-GUGGG- UGA--CCU-A C-CCGG---A -AGAG-G-GG 421 -GAC-AA-CC U--------- ------GG-- G(-GAAA-)C -UCGG-G--C UAAUCCC-CC 481 AU-GUG---- ---------- -------G-U CG-U--G--- ---CCC-(-- --------UU 541 UG-------- -)-GGG---- -U-GC----G AU--UAAA-- ---GGGU--- ---------- 601 --(------- ---GAAG--- ---)------ ---------| --AGCC--C- G--CUU---- 661 ----CCGG-- AUG---G-|G CCCGC----- -GU|----CC C--AUCA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAU-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----CG-GG 781 U-AG-C-CG| -G-UCU--(G -AGA)-GGAU ----GG-C-- CGG-C|C-AC -AGGGG-C-A 841 (CUGA-GA-C ACG)--GGCC -CCA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-U 901 AGG-AAUCUU C-CGCAAU-- GG-GC-(GAA A)-GCC-UGA CGGA|-GCGA CGCC-GC-UU 961 G-G-AG-G-A G-GAA--G-C CC(--UU-CG --)GG-GUGU AAA--CUCC| UGAA--C-CC 1021 --AG-GAC-- GA-AAUC-CC --U------( -----GAUGA ---------) ------G-GG 1081 ---------- -------GGA U-GA-CGGU- A-CUG-G-GG U-AA--U-AG ---------C 1141 -GCCGGCC-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGCG-C-- 1201 GAG-CGUUAC CC-GGAUUUA -CU-GGGC|G UAAA-GGGC- GUG-UAG-GC -G|-GC-CU- 1261 G-GU-GCG|U CUG---GCGU U-AAA-GA-C CG-CGG-C(- UC-A)A-CCG -CG-G-GGG- 1321 -UGCG-CUGG A-UAC-GGCC G-GGCUA-GA CGG-----UG G-GA-GAGGG UGG-U|GGAA 1381 UU-CCCGGA- GUA-GCG(-G UGAAA)-UGC -GC-AGAU-A CC-GGGAGG- AACG-CCGA- 1441 -U-G-GC(-G AA-G)GCAG- -CCACCUG-- ---------- ---------- ---------G 1501 UCC--AC-UC GUGACG-CUG AG-G------ -------CG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CC- -GG(AUUA-G AUAC)-CCG- ----GGUA-G UC----CAC- G-CC-CU--A 1621 AAC-G-AUGC G--CA-CU-- -------A|G -GU-CU-CUG -GG------- ---------- 1681 -(-UU-A-)- ---------- ---------- ---------- ---------U -CUGGG-GGC 1741 CG--AA---- --GC-(CAA- ---C)G-CG- UUAA-GUGCG C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AGG-CC-UUG ACA-UG|--- -------C-U ---AGGG--- -AA----CCU 1981 -GGG-U--(- GAAA-)-GCC -U-GGGG--- UG-------- -CCCC----- --(GC----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------G A-)------- GGGG------ ----AG---| CCU-UA-GCA |---C|A--G 2161 GU-GC-UGCA UG|G-CCG-- UCG-UCA|-G C-U---CG-U |GC-C(-GUG A)-GGUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-CU-G |-CC--CCU- 2281 AG--UUAC-C AG-CGG---- ---------- ---------- ---G(---UG ---AAG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CCG|G 2701 G-GA-CU-C- U-AGG-GG-G A-CU-G-CCC --GC(-G--A AA)-GCG-G- -GAGG-A-AG 2761 G-CG-GGG-A UG-ACG--UC -U-GGUC-AU CAU-G-GC-C CUUAC-G-GC -CU--GGGC- 2821 G-ACA-CA-C GUG--CUACA AUGCC-U-AC -UA--CAGAG CGA-U-G-C- GA-CCU-G(G 2881 -UGA)CAGG- ---------- GA-GCGAA-U CGCAA-AAAG -GU-A-GGC- UCAGUUCGGA 2941 U-UGCAGUC- (UGCAAC-U- C)-GACUGCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGCCAU)-G CCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACG--- --CCA-UGGG A--GC-GGG- UU-CU-ACCC -GAA-G-UCG 3121 C-CGG-G--- -AG-CC---- ---------- ---------- -----(---- -UAAG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GG----C-A G-GC-GC-CG A-GGGU-AGG GCU-CG-UG- ACU-GGGG-C 3301 G---AAGUC- GUAA-CAAGG UAGCU-GUAC C(G....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS T.spTok8 4376 bp RNA RNA 02-JUL-1998 DEFINITION Thermus sp. str. Tok8 A.1. ACCESSION No information KEYWORDS No information. SOURCE Thermus sp. str. Tok8 A.1. ORGANISM Thermus sp. REFERENCE 1 AUTHORS Saul,D.J., Rodrigo,A.G., Reeves,R.A., Williams,L.C., Borges,K .M., Morgan,H.W. and Bergquist,P.L. TITLE Phylogeny of twenty Thermus isolates constructed from 16S rRNA gene sequence data JOURNAL Int. J. Syst. Bacteriol. 43, 754-760 (1993) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: L09666 isolate_name= Tok8 A.1 BASE COUNT 310 a 386 c 536 g 243 t 2901 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 GCUCAG-GGU -GAAC-GC-- UGGC-GGC-G -UGC-CU--A AGAC-AUGCA A-GUC-GUGC 121 G--GG----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- CCGCGGG-GU (--UU----- ---------- ---------- 241 --------U- -)AC-UUCGC GG-------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UC--- AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAC -GC-GUGGG- UGA--CCU-A C-CCGG---A -AGAG-G-GG 421 -GAC-AA-CC U--------- ------GG-- G(-GAAA-)C -UCGG-G--C UAAUCCC-CC 481 AU-GUG---- ---------- -------G-U CG-U--G--- ---CCC-(-- --------UU 541 UG-------- -)-GGG---- -U-GC----G AU--UAAA-- ---GGGU--- ---------- 601 --(------- ---GAAG--- ---)------ ---------| --AGCC--C- G--CUU---- 661 ----CCGG-- AUG---G-|G CCCGC----- -GU|----CC C--AUCA-G- CUA-G---UU 721 GG-UA-GG-( GU-AAU-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----CG-GG 781 U-AG-C-CG| -G-UCU--(G -AGA)-GGAU ----GG-C-- CGG-C|C-AC -AGGGG-C-A 841 (CUGA-GA-C ACG)--GGCC -CCA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-U 901 AGG-AAUCUU C-CGCAAU-- GG-GC-(GAA A)-GCC-UGA CGGA|-GCGA CGCC-GC-UU 961 G-G-AG-G-A G-GAA--G-C CC(--UU-CG --)GG-GUGU AAA--CUCC| UGAA--C-CC 1021 --AG-GAC-- GA-AAUC-CC --U------( -----GAUGA ---------) ------G-GG 1081 ---------- -------GGA U-GA-CGGU- A-CUG-G-GG U-AA--U-AG ---------C 1141 -GCCGGCC-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGCG-C-- 1201 GAG-CGUUAC CC-GGAUUUA -CU-GGGC|G UAAA-GGGC- GUG-UAG-GC -G|-GC-CU- 1261 G-GU-GCG|U CUG---GCGU U-AAA-GA-C CG-CGG-C(- UC-A)A-CCG -CG-G-GGG- 1321 -UGCG-CUGG A-UAC-GGCU G-GGCUA-GA CGG-----UG G-GA-GAGGG UGG-U|GGAA 1381 UU-CCCGGA- GUA-GCG(-G UGAAA)-UGC -GC-AGAU-A CC-GGGAGG- AACG-CCGA- 1441 -U-G-GC(-G AA-G)GCAG- -CCACCUG-- ---------- ---------- ---------G 1501 UCC--AC-UC GUGACG-CUG AG-G------ -------CG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CC- -GG(AUUA-G AUAC)-CCG- ----GGUA-G UC----CAC- G-CC-CU--A 1621 AAC-G-AUGC G--CA-CU-- -------A|G -GU-CU-CUG -GG------- ---------- 1681 -(-UU-A-)- ---------- ---------- ---------- ---------U -CUGGG-GGC 1741 CG--AA---- --GC-(CAA- ---C)G-CG- UUAA-GUGCG C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AGG-CC-UUG ACA-UG|--- -------C-U ---AAGG--- -AA----CCU 1981 -GGG-U--(- GAAA-)-GCC -U-GGGG--- UG-------- -CCCC----- --(GC----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------G A-)------- GGGG------ ----AG---| CCU-UA-GCA |---C|A--G 2161 GU-GC-UGCA UG|G-CCG-- UCG-UCA|-G C-U---CG-U |GC-C(-GUG A)-GGUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-CU-G |-CC--CCU- 2281 AG--UUAC-C AG-CGG---- ---------- ---------- ---G(---UG ---AAG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CCG|G 2701 G-GA-CU-C- U-AGG-GG-G A-CU-G-CCC --GC(-G--A AA)-GCG-G- -GAGG-A-AG 2761 G-CG-GGG-A UG-ACG--UC -U-GGUC-AU CAU-G-GC-C CUUAC-G-GC -CU--GGGC- 2821 G-ACA-CA-C GUG--CUACA AUGCC-U-AC -UA--CAGAG CGA-U-G-C- GA-CCU-G(G 2881 -UGA)CGGG- ---------- GA-GCGAA-U CGCAA-AAAG -GU-A-GGC- UCAGUUCGGA 2941 U-UGCAGUC- (UGCAAC-U- C)-GACUGCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGCCAU)-G CCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACG--- --CCA-UGGG A--GC-GGG- UU-CU-ACCC -GAA-G-UCG 3121 C-CGG-G--- -AG-CC---- ---------- ---------- -----(---- -UAAG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GG----C-A G-GC-GC-CG A-GGGU-AGG GCU-CG-UG- ACU-GGGG-C 3301 G---AAGUC- GUAA-CAAGG UAGCU-GUAC C(G....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS T.spTok20 4376 bp RNA RNA 02-JUL-1998 DEFINITION Thermus sp. str. Tok20 A.1. ACCESSION No information KEYWORDS No information. SOURCE Thermus sp. str. Tok20 A.1. ORGANISM Thermus sp. REFERENCE 1 AUTHORS Saul,D.J., Rodrigo,A.G., Reeves,R.A., Williams,L.C., Borges,K .M., Morgan,H.W. and Bergquist,P.L. TITLE Phylogeny of twenty Thermus isolates constructed from 16S rRNA gene sequence data JOURNAL Int. J. Syst. Bacteriol. 43, 754-760 (1993) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: L09665 isolate_name= Tok20 A.1 BASE COUNT 309 a 389 c 537 g 240 t 2901 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 GCUCAG-GGU -GAAC-GC-- UGGC-GGC-G -UGC-CU--A AGAC-AUGCA A-GUC-GUGC 121 G--GG----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- CCGCGGG-GU (--UU----- ---------- ---------- 241 --------U- -)AC-UUCGC GG-------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UC--- AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAC -GC-GUGGG- UGA--CCU-A C-CCGG---A -AGAG-G-GG 421 -GAC-AA-CC U--------- ------GG-- G(-GAAA-)C -UCGG-G--C UAAUCCC-CC 481 AU-GUG---- ---------- -------G-U CG-U--G--- ---CCC-(-- --------UU 541 UG-------- -)-GGG---- -U-GC----G AU--UAAA-- ---GGGU--- ---------- 601 --(------- ---GAAG--- ---)------ ---------| --AGCC--C- G--CUU---- 661 ----CCGG-- AUG---G-|G CCCGC----- -GU|----CC C--AUCA-G- CCA-G---UU 721 GG-UA-GG-( GU-AAU-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----CG-GG 781 U-AG-C-CG| -G-UCU--(G -AGA)-GGAU ----GG-C-- CGG-C|C-AC -AGGGG-C-A 841 (CUGA-GA-C ACG)--GGCC -CCA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-U 901 AGG-AAUCUU C-CGCAAU-- GG-GC-(GCA A)-GCC-UGA CGGA|-GCGA CGCC-GC-UU 961 G-G-AG-G-A G-GAA--G-C CC(--UU-CG --)GG-GUGU AAA--CUCC| UGAA--C-CC 1021 --AG-GAC-- GA-AAUC-CC --U------( -----GAUGA ---------) ------G-GG 1081 ---------- -------GGA U-GA-CGGU- A-CUG-G-GG U-AA--U-AG ---------C 1141 -GCCGGCC-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGCG-C-- 1201 GAG-CGUUAC CC-GGAUUUA -CU-GGGC|G UAAA-GGGC- GUG-UAG-GC -G|-GC-CU- 1261 G-GU-GCG|U CUG---GCGU U-AAA-GA-C CG-CGG-C(- UC-A)A-CCG -CG-G-GGG- 1321 -UGCG-CUGG A-UAC-GGCC G-GGCUA-GA CGG-----UG G-GA-GAGGG UGG-U|GGAA 1381 UU-CCCGGA- GUA-GCG(-G UGAAA)-UGC -GC-AGAU-A CC-GGGAGG- AACG-CCGA- 1441 -U-G-GC(-G AA-G)GCAG- -CCACCUG-- ---------- ---------- ---------G 1501 UCC--AC-UC GUGACG-CUG AG-G------ -------CG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CC- -GG(AUUA-G AUAC)-CCG- ----GGUA-G UC----CAC- G-CC-CU--A 1621 AAC-G-AUGC G--CA-CU-- -------A|G -GU-CU-CUG -GG------- ---------- 1681 -(-UU-A-)- ---------- ---------- ---------- ---------A -CUGGG-GGC 1741 CG--AA---- --GC-(CAA- ---C)G-CG- UUAA-GUGCG C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AGG-CC-UUG ACA-UG|--- -------C-U ---AGGG--- -AA----CCU 1981 -GGG-U--(- GAAA-)-GCC -U-GGGG--- UG-------- -CCCC----- --(GC----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------G A-)------- GGGG------ ----AG---| CCU-UA-GCA |---C|A--G 2161 GU-GC-UGCA UG|G-CCG-- UCG-UCA|-G C-U---CG-U |GC-C(-GUG A)-GGUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-CU-G |-CC--CCU- 2281 AG--UUAC-C AG-CGG---- ---------- ---------- ---G(---UG ---AAG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CCG|G 2701 G-GA-CU-C- U-AGG-GG-G A-CU-G-CCC --GC(-G--A AA)-GCG-G- -GAGG-A-AG 2761 G-CG-GGG-A UG-ACG--UC -U-GGUC-AU CAU-G-GC-C CUUAC-G-GC -CU--GGGC- 2821 G-ACA-CA-C GUG--CUACA AUGCC-U-AC -UA--CAGAG CGA-U-G-C- GA-CCU-G(G 2881 -UGA)CGGG- ---------- GA-GCGAA-U CGCAA-AAAG -GU-A-GGC- UCAGUUCGGA 2941 U-UGCAGUC- (UGCAAC-U- C)-GACUGCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGCCAU)-G CCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACG--- --CCA-UGGG A--GC-GGG- UU-CU-ACCC -GAA-G-UCG 3121 C-CGG-G--- -AG-CC---- ---------- ---------- -----(---- -UAAG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GG----C-A G-GC-GC-CG A-GGGU-AGG GCU-CG-UG- ACU-GGGG-C 3301 G---AAGUC- GUAA-CAAGG UAGCU-GUAC C(G....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS T.spTok3 4376 bp RNA RNA 02-JUL-1998 DEFINITION Thermus sp. str. Tok3 A.1. ACCESSION No information KEYWORDS No information. SOURCE Thermus sp. str. Tok3 A.1. ORGANISM Thermus sp. REFERENCE 1 AUTHORS Saul,D.J., Rodrigo,A.G., Reeves,R.A., Williams,L.C., Borges,K .M., Morgan,H.W. and Bergquist,P.L. TITLE Phylogeny of twenty Thermus isolates constructed from 16S rRNA gene sequence data JOURNAL Int. J. Syst. Bacteriol. 43, 754-760 (1993) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: L10069|g452146 isolate_name= Tok3 A.1 BASE COUNT 310 a 388 c 536 g 241 t 2901 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 GCUCAG-GGU -GAAC-GC-- UGGC-GGC-G -UGC-CU--A AGAC-AUGCA A-GUC-GUGC 121 G--GG----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- CCGCGGG-GU (--UU----- ---------- ---------- 241 --------U- -)AC-UUCGC GG-------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UC--- AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAC -GC-GUGGG- UGA--CCU-A C-CCGG---A -AGAG-G-GG 421 -GAC-AA-CC U--------- ------GG-- G(-GAAA-)C -UCGG-G--C UAAUCCC-CC 481 AU-GUG---- ---------- -------G-U CG-U--G--- ---CCC-(-- --------UU 541 UG-------- -)-GGG---- -U-GC----G AU--UAAA-- ---GGGU--- ---------- 601 --(------- ---GAAG--- ---)------ ---------| --AGCC--C- G--CUU---- 661 ----CCGG-- AUG---G-|G CCCGC----- -GU|----CC C--AUCA-G- CUA-G---UU 721 GG-UA-GG-( GU-AAU-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----CG-GG 781 U-AG-C-CG| -G-UCU--(G -AGA)-GGAU ----GG-C-- CGG-C|C-AC -AGGGG-C-A 841 (CUGA-GA-C ACG)--GGCC -CCA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-U 901 AGG-AAUCUU C-CGCAAU-- GG-GC-(GCA A)-GCC-UGA CGGA|-GCGA CGCC-GC-UU 961 G-G-AG-G-A G-GAA--G-C CC(--UU-CG --)GG-GUGU AAA--CUCC| UGAA--C-CC 1021 --AG-GAC-- GA-AAUC-CC --U------( -----GAUGA ---------) ------G-GG 1081 ---------- -------GGA U-GA-CGGU- A-CUG-G-GG U-AA--U-AG ---------C 1141 -GCCGGCC-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGCG-C-- 1201 GAG-CGUUAC CC-GGAUUUA -CU-GGGC|G UAAA-GGGC- GUG-UAG-GC -G|-GC-CU- 1261 G-GU-GCG|U CUG---GCGU U-AAA-GA-C CG-CGG-C(- UC-A)A-CCG -CG-G-GGG- 1321 -UGCG-CUGG A-UAC-GGCC G-GGCUA-GA CGG-----UG G-GA-GAGGG UGG-U|GGAA 1381 UU-CCCGGA- GUA-GCG(-G UGAAA)-UGC -GC-AGAU-A CC-GGGAGG- AACG-CCGA- 1441 -U-G-GC(-G AA-G)GCAG- -CCACCUG-- ---------- ---------- ---------G 1501 UCC--AC-UC GUGACG-CUG AG-G------ -------CG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CC- -GG(AUUA-G AUAC)-CCG- ----GGUA-G UC----CAC- G-CC-CU--A 1621 AAC-G-AUGC G--CA-CU-- -------A|G -GU-CU-CUG -GG------- ---------- 1681 -(-UU-A-)- ---------- ---------- ---------- ---------A -CUGGG-GGC 1741 CG--AA---- --GC-(CAA- ---C)G-CG- UUAA-GUGCG C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AGG-CC-UUG ACA-UG|--- -------C-U ---AGGG--- -AA----CCU 1981 -GGG-U--(- GAAA-)-GCC -U-GGGG--- UG-------- -CCCC----- --(GC----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------G A-)------- GGGG------ ----AG---| CCU-UA-GCA |---C|A--G 2161 GU-GC-UGCA UG|G-CCG-- UCG-UCA|-G C-U---CG-U |GC-C(-GUG A)-GGUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-CU-G |-CC--CCU- 2281 AG--UUAC-C AG-CGG---- ---------- ---------- ---G(---UG ---AAG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CCG|G 2701 G-GA-CU-C- U-AGG-GG-G A-CU-G-CCC --GC(-G--A AA)-GCG-G- -GAGG-A-AG 2761 G-CG-GGG-A UG-ACG--UC -U-GGUC-AU CAU-G-GC-C CUUAC-G-GC -CU--GGGC- 2821 G-ACA-CA-C GUG--CUACA AUGCC-U-AC -UA--CAAAG CGA-U-G-C- GA-CCU-G(G 2881 -UGA)CGGG- ---------- GA-GCGAA-U CGCAA-AAAG -GU-A-GGC- UCAGUUCGGA 2941 U-UGCAGUC- (UGCAAC-U- C)-GACUGCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGCCAU)-G CCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACG--- --CCA-UGGG A--GC-GGG- UU-CU-ACCC -GAA-G-UCG 3121 C-CGG-G--- -AG-CC---- ---------- ---------- -----(---- -UAAG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GG----C-A G-GC-GC-CG A-GGGU-AGG GCU-CG-UG- ACU-GGGG-C 3301 G---AAGUC- GUAA-CAAGG UAGCU-GUAC C(G....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS T.spRt4 4376 bp RNA RNA 02-JUL-1998 DEFINITION Thermus sp. str. Rt4 1A. ACCESSION No information KEYWORDS No information. SOURCE Thermus sp. str. Rt4 1A. ORGANISM Thermus sp. REFERENCE 1 AUTHORS Saul,D.J., Rodrigo,A.G., Reeves,R.A., Williams,L.C., Borges,K.M ., Morgan,H.W. and Bergquist,P.L. TITLE Phylogeny of twenty Thermus isolates constructed from 16S rRNA gene sequence data JOURNAL Int. J. Syst. Bacteriol. 43, 754-760 (1993) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: L09669 isolate_name= Rt4 1A BASE COUNT 309 a 388 c 536 g 241 t 2902 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 GCUCAG-GGU -GAAC-GC-- UGGC-GGC-G -UGC-CU--A AGAC-AUGCA A-GUC-GUGC 121 G--GG----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- CUGCGGG-GU (--UU----- ---------- ---------- 241 --------U- -)AC-UUCGC GG-------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UC--- AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAC -GC-GUGGG- UGA--CCU-A C-CCGG---A -AGAG-G-GG 421 -GAC-AA-CC U--------- ------GG-- G(-GAAA-)C -UCGG-G--C UAAUCCC-CC 481 AU-GUG---- ---------- -------G-U CG-U--G--- ---CCC-(-- --------UU 541 UG-------- -)-GGG---- -U-GC----G AU--UAAA-- ---GGGU--- ---------- 601 --(------- ---GAAG--- ---)------ ---------| --AGCC--C- G--CUU---- 661 ----CCGG-- AUG---G-|G CCCGC----- -GU|----CC C--AUCA-G- CCA-G---UU 721 GG-UA-GG-( GU-AAU-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----CG-GG 781 U-AG-C-CG| -G-UCU--(G -AGA)-GGAU ----GG-C-- CGG-C|C-AC -AGGGG-C-A 841 (CUGA-GA-C ACG)--GGCC -CCA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-U 901 AGG-AAUCUU C-CGCAAU-- GG-GC-(GAA A)-GCU-UGA CGGA|-GCGA CGCC-GC-UU 961 G-G-AG-G-A G-GAA--G-C CC(--UU-CG --)GG-GUGU AAA--CUCC| UGAA--C-CC 1021 --AG-GAC-- GA-AAUC-CC --U------( -----GAUGA ---------) ------G-GG 1081 ---------- -------GGA U-GA-CGGU- A-CUG-G-GG U-AA--U-AG ---------C 1141 -GCCGGCC-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGCG-C-- 1201 GAG-CGUUAC CC-GGAUUUA -CU-GGGC|G UAAA-GGGC- GUG-UAG-GC -G|-GC-CU- 1261 G-GU-GCG|U CUG---GCGU U-AAA-GA-C CG-CGG-C(- UC-A)A-CCG -CG-G-GGG- 1321 -UGCG-CUGG A-UAC-GGCC G-GGCUA-GA CGG-----UG G-GA-GAGRG UGG-U|GGAA 1381 UU-CCCGGA- GUA-GCG(-G UGAAA)-UGC -GC-AGAU-A CC-GGGAGG- AACG-CCGA- 1441 -U-G-GC(-G AA-G)GCAG- -CCACCUG-- ---------- ---------- ---------G 1501 UCC--AC-CC GUGACG-CUG AG-G------ -------CG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAG-CC- -GG(AUUA-G AUAC)-CCG- ----GGUA-G UC----CAC- G-CC-CU--A 1621 AAC-G-AUGC G--CA-CU-- -------A|G -GU-CU-CUG -GG------- ---------- 1681 -(-UU-A-)- ---------- ---------- ---------- ---------U -CUGGG-GGC 1741 CG--AA---- --GC-(CAA- ---C)G-CG- UUAA-GUGCG C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AGG-CC-UUG ACA-UG|--- -------C-U ---AGGG--- -AA----CCC 1981 -GGG-U--(- GAAA-)-GCC -U-GGGG--- UG-------- -CCCC----- --(GC----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------G A-)------- GGGG------ ----AG---| CCU-UA-GCA |---C|A--G 2161 GU-GC-UGCA UG|G-CCG-- UCG-UCA|-G C-U---CG-U |GC-C(-GUG A)-GGUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-CU-G |-CC--CCU- 2281 AG--UUAC-C AG-CGG---- ---------- ---------- ---G(---UG ---AAG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CCG|G 2701 G-GA-CU-C- U-AGG-GG-G A-CU-G-CCC --GC(-G--A AA)-GCG-G- -GAGG-A-AG 2761 G-CG-GGG-A UG-ACG--UC -U-GGUC-AU CAU-G-GC-C CUUAC-G-GC -CU--GGGC- 2821 G-ACA-CA-C GUG--CUACA AUGCC-U-AC -UA--CAGAG CGA-U-G-C- GA-CCU-G(G 2881 -UGA)CAGG- ---------- GA-GCGAA-U CGCAA-AAAG -GU-A-GGC- UCAGUUCGGA 2941 U-UGCAGUC- (UGCAAC-U- C)-GACUGCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGCCAU)-G CCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACG--- --CCA-UGGG A--GC-GGG- UU-CU-ACCC -GAA-G-UCG 3121 C-CGG-G--- -AG-CC---- ---------- ---------- -----(---- -UAAG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GG----C-A G-GC-GC-CG A-GGGU-AGG GCU-CG-UG- ACU-GGGG-C 3301 G---AAGUC- GUAA-CAAGG UAGCU-GUAC C(G....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS T.spOK6 4376 bp RNA RNA 02-JUL-1998 DEFINITION Thermus sp. str. OK6 A.1. ACCESSION No information KEYWORDS No information. SOURCE Thermus sp. str. OK6 A.1. ORGANISM Thermus sp. REFERENCE 1 AUTHORS Saul,D.J., Rodrigo,A.G., Reeves,R.A., Williams,L.C., Borges,K.M ., Morgan,H.W. and Bergquist,P.L. TITLE Phylogeny of twenty Thermus isolates constructed from 16S rRNA gene sequence data JOURNAL Int. J. Syst. Bacteriol. 43, 754-760 (1993) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: L09668 isolate_name= OK6 A.1 BASE COUNT 311 a 389 c 535 g 240 t 2901 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 GCUCAG-GGU -GAAC-GC-- UGGC-GGC-G -UGC-CU--A AGAC-AUGCA A-GUC-GUGC 121 G--GG----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- CUGCGGG-GU (--UU----- ---------- ---------- 241 --------U- -)AC-UUCGC GG-------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UC--- AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAC -GC-GUGGG- UGA--CCU-A C-CCGG---A -AGAG-G-GG 421 -GAC-AA-CC U--------- ------GG-- G(-GAAA-)C -UCGG-G--C UAAUCCC-CC 481 AU-GUG---- ---------- -------G-U CG-U--G--- ---CCC-(-- --------UU 541 UG-------- -)-GGG---- -U-GC----G AU--UAAA-- ---GGGU--- ---------- 601 --(------- ---GAAG--- ---)------ ---------| --AGCC--C- G--CUU---- 661 ----CCGG-- AUG---G-|G CCCGC----- -GU|----CC C--AUCA-G- CCA-G---UU 721 GG-UA-GG-( GU-AAU-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----CG-GG 781 U-AG-C-CG| -G-UCU--(G -AGA)-GGAU ----GG-C-- CGG-C|C-AC -AGGGG-C-A 841 (CUGA-GA-C ACG)--GGCC -CCA-C-UCC -(UACG)--G AAG-GC-AG- C-A---GU-U 901 AGG-AAUCUU C-CGCAAU-- GG-GC-(GAA A)-GCC-UGA CGGA|-GCGA CGCC-GC-UU 961 G-G-AG-G-A G-GAA--G-C CC(--UU-CG --)GG-GUGU AAA--CUCC| UGAA--C-CC 1021 --AG-GAC-- GA-AAUC-CC --U------( -----GAUGA ---------) ------G-GG 1081 ---------- -------GGA U-GA-CGGU- A-CUG-G-GG U-AA--U-AG ---------C 1141 -GCCGGCC-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGCG-C-- 1201 GAG-CGUUAC CC-GGAUUUA -CU-GGGC|G UAAA-GGGC- GUG-UAG-GC -G|-GC-CU- 1261 G-GU-GCG|U CUG---GCGU U-AAA-GA-C CG-CGG-C(- UC-A)A-CCG -CG-G-GGG- 1321 -UGCG-CUGG A-UAC-GGCC G-GGCUA-GA CGG-----UG G-GA-GAGGG UGG-U|GGAA 1381 UU-CCCGGA- GUA-GCG(-G UGAAA)-UGC -GC-AGAU-A CC-GGGAGG- AACG-CCGA- 1441 -U-G-GC(-G AA-G)GCAG- -CCACCUG-- ---------- ---------- ---------G 1501 UCC--AC-CC GUGACG-CUG AG-G------ -------CG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CC- -GG(AUUA-G AUAC)-CCG- ----GGUA-G UC----CAC- G-CC-CU--A 1621 AAC-G-AUGC G--CA-CU-- -------A|G -GU-CU-CUG -GG------- ---------- 1681 -(-UU-A-)- ---------- ---------- ---------- ---------U -CUGGG-GGC 1741 CG--AA---- --GC-(CAA- ---C)G-CG- UUAA-GUGCG C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AGG-CC-UUG ACA-UG|--- -------C-U ---AGGG--- -AA----CCC 1981 -GGG-U--(- GAAA-)-GCC -U-GGGG--- UG-------- -CCCC----- --(GC----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------G A-)------- GGGG------ ----AG---| CCU-UA-GCA |---C|A--G 2161 GU-GC-UGCA UG|G-CCG-- UCG-UCA|-G C-U---CG-U |GC-C(-GUG A)-GGUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-CU-G |-CC--CCU- 2281 AG--UUAC-C AG-CGG---- ---------- ---------- ---G(---UG ---AAG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CCG|G 2701 G-GA-CU-C- U-AGG-GG-G A-CU-G-CCC --GC(-G--A AA)-GCG-G- -GAGG-A-AG 2761 G-CG-GGG-A UG-ACG--UC -U-GGUC-AU CAU-G-GC-C CUUAC-G-GC -CU--GGGC- 2821 G-ACA-CA-C GUG--CUACA AUGCC-U-AC -UA--CAGAG CGA-U-G-C- GA-CCU-G(G 2881 -UGA)CAGG- ---------- GA-GCGAA-U CGCAA-AAAG -GU-A-GGC- UCAGUUCGGA 2941 U-UGCAGUC- (UGCAAC-U- C)-GACUGCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGCCAU)-G CCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACG--- --CCA-UGGG A--GC-GGG- UU-CU-ACCC -GAA-G-UCG 3121 C-CGG-G--- -AG-CC---- ---------- ---------- -----(---- -UAAG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GG----C-A G-GC-GC-CG A-GGGU-AGG GCU-CG-UG- ACU-GGGG-C 3301 G---AAGUC- GUAA-CAAGG UAGCU-GUAC C(G....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS T.spT351 4376 bp RNA RNA 02-JUL-1998 DEFINITION Thermus sp. str. T351. ACCESSION No information KEYWORDS No information. SOURCE Thermus sp. str. T351. ORGANISM Thermus sp. REFERENCE 1 AUTHORS Saul,D.J., Rodrigo,A.G., Reeves,R.A., Williams,L.C., Borges,K .M., Morgan,H.W. and Bergquist,P.L. TITLE Phylogeny of twenty Thermus isolates constructed from 16S rRNA gene sequence data JOURNAL Int. J. Syst. Bacteriol. 43, 754-760 (1993) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: L09671 isolate_name= T351 BASE COUNT 310 a 389 c 536 g 240 t 2901 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 GCUCAG-GGU -GAAC-GC-- UGGC-GGC-G -UGC-CU--A AGAC-AUGCA A-GUC-GUGC 121 G--GG----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- CUGCGGG-GU (--UU----- ---------- ---------- 241 --------U- -)AC-UUCGC GG-------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UC--- AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAC -GC-GUGGG- UGA--CCU-A C-CCGG---A -AGAG-G-GG 421 -GAC-AA-CC U--------- ------GG-- G(-GAAA-)C -UCGG-G--C UAAUCCC-CC 481 AU-GUG---- ---------- -------G-U CG-U--G--- ---CCC-(-- --------UU 541 UG-------- -)-GGG---- -U-GC----G AU--UAAA-- ---GGGU--- ---------- 601 --(------- ---GAAG--- ---)------ ---------| --AGCC--C- G--CUU---- 661 ----CCGG-- AUG---G-|G CCCGC----- -GU|----CC C--AUCA-G- CCA-G---UU 721 GG-UA-GG-( GU-AAU-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----CG-GG 781 U-AG-C-CG| -G-UCU--(G -AGA)-GGAU ----GG-C-- CGG-C|C-AC -AGGGG-C-A 841 (CUGA-GA-C ACG)--GGCC -CCA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-U 901 AGG-AAUCUU C-CGCAAU-- GG-GC-(GAA A)-GCC-UGA CGGA|-GCGA CGCC-GC-UU 961 G-G-AG-G-A G-GAA--G-C CC(--UU-CG --)GG-GUGU AAA--CUCC| UGAA--C-CC 1021 --AG-GAC-- GA-AAUC-CC --U------( -----GAUGA ---------) ------G-GG 1081 ---------- -------GGA U-GA-CGGU- A-CUG-G-GG U-AA--U-AG ---------C 1141 -GCCGGCC-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGCG-C-- 1201 GAG-CGUUAC CC-GGAUUUA -CU-GGGC|G UAAA-GGGC- GUG-UAG-GC -G|-GC-CU- 1261 G-GU-GCG|U CUG---GCGU U-AAA-GA-C CG-CGG-C(- UC-A)A-CCG -CG-G-GGG- 1321 -UGCG-CUGG A-UAC-GGCC G-GGCUA-GA CGG-----UG G-GA-GAGGG UGG-U|GGAA 1381 UU-CCCGGA- GUA-GCG(-G UGAAA)-UGC -GC-AGAU-A CC-GGGAGG- AACG-CCGA- 1441 -U-G-GC(-G AA-G)GCAG- -CCACCUG-- ---------- ---------- ---------G 1501 UCC--AC-CC GUGACG-CUG AG-G------ -------CG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CC- -GG(AUUA-G AUAC)-CCG- ----GGUA-G UC----CAC- G-CC-CU--A 1621 AAC-G-AUGC G--CA-CU-- -------A|G -GU-CU-CUG -GG------- ---------- 1681 -(-UU-A-)- ---------- ---------- ---------- ---------U -CUGGG-GGC 1741 CG--AA---- --GC-(CAA- ---C)G-CG- UUAA-GUGCG C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AGG-CC-UUG ACA-UG|--- -------C-U ---AGGG--- -AA----CCC 1981 -GGG-U--(- GAAA-)-GCC -U-GGGG--- UG-------- -CCCC----- --(GC----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------G A-)------- GGGG------ ----AG---| CCU-UA-GCA |---C|A--G 2161 GU-GC-UGCA UG|G-CCG-- UCG-UCA|-G C-U---CG-U |GC-C(-GUG A)-GGUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-CU-G |-CC--CCU- 2281 AG--UUAC-C AG-CGG---- ---------- ---------- ---G(---UG ---AAG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CCG|G 2701 G-GA-CU-C- U-AGG-GG-G A-CU-G-CCC --GC(-G--A AA)-GCG-G- -GAGG-A-AG 2761 G-CG-GGG-A UG-ACG--UC -U-GGUC-AU CAU-G-GC-C CUUAC-G-GC -CU--GGGC- 2821 G-ACA-CA-C GUG--CUACA AUGCC-U-AC -UA--CAGAG CGA-U-G-C- GA-CCU-G(G 2881 -UGA)CAGG- ---------- GA-GCGAA-U CGCAA-AAAG -GU-A-GGC- UCAGUUCGGA 2941 U-UGCAGUC- (UGCAAC-U- C)-GACUGCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGCCAU)-G CCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACG--- --CCA-UGGG A--GC-GGG- UU-CU-ACCC -GAA-G-UCG 3121 C-CGG-G--- -AG-CC---- ---------- ---------- -----(---- -UAAG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GG----C-A G-GC-GC-CG A-GGGU-AGG GCU-CG-UG- ACU-GGGG-C 3301 G---AAGUC- GUAA-CAAGG UAGCU-GUAC C(G....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS 2.4.2.1.3 4376 bp RNA RNA 09-JAN-1999 DEFINITION 2.4.2.1.3 MEIOTHERMUS_SUBGROUP. ACCESSION No information KEYWORDS No information. SOURCE 2.4.2.1.3 MEIOTHERMUS_SUBGROUP. ORGANISM 2.4.2.1.3 MEIOTHERMUS_SUBGROUP. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 0 a 0 c 0 g 0 t 4376 others ORIGIN 1 x~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~-- ------~~~~ 541 ~~~~~~---- -~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~---~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- 1681 -(~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- -------~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~----~~~ 1981 ~~~~-~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~--- --~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~------ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~---~~ ---~~~--~~ 2341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- 3181 ---------- ---------- ---------- ------~)~~ ~~~~~~~~~~ ~~~~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS T.sp_ac17 4376 bp RNA RNA 02-JUL-1998 DEFINITION Thermus sp. str. ac-17. ACCESSION No information KEYWORDS No information. SOURCE Thermus sp. str. ac-17. ORGANISM Thermus sp. REFERENCE 1 AUTHORS Nold,S.C. and Ward,D.M. TITLE Diverse thermus species inhabit a single hot spring microbial mat JOURNAL Syst. Appl. Microbiol. 18, 274-278 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: L37523|g576923 isolate_name= ac-17 NB: non-confirming pattern at 1451r BASE COUNT 329 a 355 c 472 g 265 t 2955 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......GGU -GAAC-GC-- UGGC-GGU-A -UGC-CU--A AGAC-AUGCA A-GUC-GCAC 121 G--GA----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -----CU-GU (--UU----- ---------- ---------- 241 --------CG -)GC-AG--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UU--- AGUG-GCGG- 361 -A-CG-GG-U GAGU---AAC -AC-GUAGG- UGA--CCU-A C-CCCA---A -AGUC-U-GG 421 -GAC-AA-CU A--------- ------GG-- A(-GAAA-)U -CUUA-G--C UAAUCCU-GG 481 AU-GUG---- ---------- -------A-A CC-U--C--- ---AGC-(-- --------UG 541 UG-------- -)-GCU---- -G-AU----G UU--UAAA-- ---GC----- ---------- 601 --(------- ---UUCG--- ---)------ ---------| -----G--C- G--CUU---- 661 ----UGGG-- AUG---G-|G CCUGC----- -GG|----CG C--AUCA-G- GUA-G---UU 721 GG-UG-GG-( GU-AAU-GG) -C-CCACC-A A|-GCC-GA- CGA------- -----CG-CG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAC ----GA-C-- CAG-C|C-AC -AGGGG-U-A 841 (CUGA-GA-C ACG)--GACC -CCA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-U 901 AGG-AAUCUU C-CGCAAU-- GG-GC-(GAA A)-GCC-UGA CGGA|-GCGA UACC-GC-UU 961 G-A-AG-G-A C-GAA--G-C CC(--UU-CG --)GG-GUGU AAA--CUUC| UGAA--C-UC 1021 --GG-GAC-- GA-------- ---------( ------UAA- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CCG-A-GG U-AA--U-AG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGUG-C-- 1201 GAG-CGUUAC CC-GGAUUUA -CU-GGGU|G UAAA-GGGC- GUG-UAG-GC -G|-GU-CU- 1261 C-UC-AAG|U CCG---AUGC U-AAA-GA-C CG-AAG-C(- UC-A)A-CUU -CG-G-GGG- 1321 -UGCG-UUGG A-UAC-UGUG A-GGCUA-GA CGG-----UC G-GA-GAGGG UAG-C|GGAA 1381 UU-UCCGGA- GUA-GCG(-G UGAAA)-UGC -GC-AGAU-A CC-GGAAGG- AACG-CCAA- 1441 -U-A-GC(-G AA-A)GCAG- -CUACCUG-- ---------- ---------- ---------G 1501 ACG--AU-UG GUGACG-CUG AG-G------ -------CG- C-GAAA-GS- GU-GGG-GA- 1561 GC-AAA-CC- -GG(AUUA-G AUAC)-CCG- ----GGUA-G UC----CAC- N-CC-CU--A 1621 AAC-G-AUGA G--UG-CU-- -------G|G -GU-GU-CCG -AC------- ---------- 1681 -(-AU-CU)- ---------- ---------- ---------- ---------G -UUGGG-UGC 1741 CG--UA---- --GC-(UAA- ---C)G-CG- UUAA-GCACU C|C|A-CCU- G-GGAAGUAC 1801 GGU-C---(G CAA)---G-G CU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGCAGA 1921 A-CCUUA-CC AGG-UC-UUG ACA-UC|--- ---------C ---ACGG--- -AA----CCC 1981 -UGG-U--(- GAAA-)-GCC -G-GGGG--- UG-------- -CCC------ --(GC----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------A A-)------- -GGG------ ----AG---| CCG-UG-AGA |---C|A--G 2161 GU-GC-UGCA UG|G-UCG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UU--GCU- 2281 AG--UUGC-C AU-CAG---- ---------- ---------- ----(---UU ---CGG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CUG|G 2701 G-CA-CU-C- U-AGC-GA-G A-CU-G-CCU --AC(-G--A AA)-GUA-G- -GAGG-A-AG 2761 G-CG-GGG-A UG-ACG--UC -U-GAUC-CG CAU-G-GC-C CUUAC-G-AC -CU--GGGC- 2821 G-ACA-CA-C GUG--CUACA AUGCC-U-GC -CA--CAAAG CGC-U-G-C- GA-CCC-G(G 2881 -CAA)CGGG- ---------- AA-GCCAA-U CGCAU-AAAA -GC-A-GGC- UCAGUUCGGA 2941 U-UGGGGUC- (UGCAAC-U- C)-GACCCCA -UGAAGC-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGCCAU)-G CCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-AAG--- --CCA-UGGG A--GU-GGG- UU-UU-GCCU -GAA-G-UCG 3121 C-CGG-G--- -AG-CUUGCG ---------- ---------- -----(---- CGGGAA---- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 -----CGCGC -GG----C-A G-GC-GC-CU A-GGGU-AAG GCU-CA-UG- ACU-GGGG-C 3301 U......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS T.sp_ac2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Thermus sp. str. ac-2. ACCESSION No information KEYWORDS No information. SOURCE Thermus sp. str. ac-2. ORGANISM Thermus sp. REFERENCE 1 AUTHORS Nold,S.C. and Ward,D.M. TITLE Diverse thermus species inhabit a single hot spring microbial mat JOURNAL Syst. Appl. Microbiol. 18, 274-278 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: L37521|g576924 isolate_name= ac-2 BASE COUNT 328 a 353 c 467 g 263 t 2965 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......GGU -GAAC-GC-- UGGC-GGU-A -UGC-CU--A AGAC-AUGCA A-GUC-GCAC 121 G--GA----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -----CU-GU (--UU----- ---------- ---------- 241 --------CG -)GC-AG--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UU--- AGUG-GCGG- 361 -A-CG-GG-U GAGU---AAC -AC-GUAGG- UGA--CCU-A C-CCCA---A -AGUC-U-GG 421 -GAC-AA-CU A--------- ------GG-- A(-GAAA-)U -CUUA-G--C UAAUCCU-GG 481 AU-GUG---- ---------- -------A-A CC-U--C--- ---AGC-(-- --------UG 541 UG-------- -)-GCU---- -G-AU----G UU--UAAA-- ---GC----- ---------- 601 --(------- ---UUCG--- ---)------ ---------| -----G--C- G--CUU---- 661 ----UGGG-- AUG---G-|C CGUGC----- -GG|----CG C--AUCA-G- GUA-G---UU 721 GG-UG-GG-( GU-AAC-GG) -C-CCACC-A A|-GCC-GA- CGA------- -----CG-CG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAC ----GA-C-- CAG-C|C-AC -AGGGG-U-A 841 (CUGA-GA-C ACG)--GACC -CCA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-U 901 AGG-AAUCUU C-CGCAAU-- GG-GC-(GAA A)-GCC-UGA CGGA|-GCGA UACC-GC-UU 961 G-A-AG-G-A C-GAA--G-C CC(--UU-CG --)GG-GUGU AAA--CUUC| UGAA--C-UC 1021 --GG-GAC-- GA-------- ---------( ------UAA- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CCG-A-GG U-AA--U-AG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGUG-C-- 1201 GAG-CGUUAC CC-GGAUUUA -CU-GGGU|G UAAA-GGGC- GUG-UAG-GC -G|-GU-CU- 1261 C-UC-AAG|U CCG---AUGC U-AAA-GA-C CG-AAG-C(- UC-A)A-CUU -CG-G-GGG- 1321 -UGCG-UUGG A-UAC-UGUG A-GGCUA-GA CGG-----UC G-GA-GAGGG UAG-C|GGAA 1381 UU-UCCGGA- GUA-GCG(-G UGAAA)-UGC -GC-AGAU-A CC-GGAAGG- AACG-CCGA- 1441 -U-A-GC(-G AA-A)GCAG- -CUACCUG-- ---------- ---------- ---------G 1501 ACG--AU-UU GUGACG-CUG AG-G------ -------CG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CC- -GG(AUUA-G AUAC)-CCG- ----GGUA-G UC----CAC- G-CC-CU--A 1621 AAC-G-AUGA G--UG-CU-- -------G|G -GU-GU-GCG -AC------- ---------- 1681 -(-AU-CU)- ---------- ---------- ---------- ---------G -UUGGG-UGC 1741 CG--UA---- --GC-(UAA- ---C)G-CG- UUAA-GCACU C|C|A-CCU- G-GGAAGUAC 1801 GGU-C---(G CAA)---G-A CU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGCAGA 1921 A-CCUUA-CC AGG-UC-UUG ACA-UC|--- ---------C ---ACGG--- -AA----CCC 1981 -UGG-U--(- GAAA-)-GCC -G-GGGG--- UG-------- -CCC------ --(GC----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------A A-)------- -GGG------ ----AG---| CCG-UG-AGA |---C|A--G 2161 GU-GC-UGCA UG|G-UCG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UU--GCU- 2281 AG--UUGC-C AU-CAG---- ---------- ---------- ----(---UU ---CGG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CUG|G 2701 G-CA-CU-C- U-AGC-GA-G A-CU-G-CCU --AC(-G--A AA)-GUA-G- -GAGG-A-AG 2761 G-CG-GGG-A UG-ACG--UC -U-GAUC-CG CAU-G-GC-C CUUAC-G-AC -CU--GGGC- 2821 G-ACA-CA-C GUG--CUACA AUGCC-U-GC -CA--CAAAG CGC-U-G-C- GA-CCC-G(G 2881 -CAA)CGGG- ---------- AA-GCCAA-U CGCAU-AAAA -GC-A-GGC- UCAGUUCGGA 2941 U-UGGGGUC- (UGCAAC-U- C)-GACCCCA -UGAAGC-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGCCAU)-G CCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-AAG--- --CCA-UGGG A--GU-GGG- UU-UU-GCCU -GAA-G-UCG 3121 C-CGG-G--- -AG-CC---- ---------- ---------- -----(---- --GCA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GG----C-A G-GC-GC-CU A-GGGU-AAG GCU-CA-UG- ACU-GGGG-C 3301 U......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Mei.ruber 4376 bp RNA RNA 02-JUL-1998 DEFINITION Meiothermus ruber str. Loginova 21 ATCC 35948. ACCESSION No information KEYWORDS No information. SOURCE Meiothermus ruber str. Loginova 21 ATCC 35948. ORGANISM Meiothermus ruber. REFERENCE 1 AUTHORS Bateson,M.M., Thibault,K.J. and Ward,D.M. TITLE Comparative Analysis of 16S Ribosomal RNA Sequences of Thermus Species JOURNAL Syst. Appl. Microbiol. 13, 8-13 (1990) STANDARD No information COMMENTS Organism information Culture collection: ATCC 35948 Sequence information (bases 1 to 4376) Corresponding GenBank entry: X58346 Former RDP Sids: T.ruber isolate_name= Loginova 21 NB: former name Thermus ruber BASE COUNT 168 a 172 c 217 g 110 t 3709 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... .GG|----CG C--AUHA-G- GUA-G---UU 721 GG-UG-GG-( GU-AAU-GG) -C-CUACC-H A|-GCC-GA- CGA------- -----CN-NG 781 U-AG-C-UN| -G-UCU--(K -AGA)-GGAC ----GA-U-- CAN-C|C-AC -AGGGG-U-A 841 (CUGA-NA-C ACG)--GACC -NNN-C-UCN -(NNHG)--G GAG-GC-AN- C-A---NU-U 901 AGG-AAUCUU C-CGCAAU-- GG-GC-(GAA A)-GCC-UGA CGGA|-GCGA UACC-GC-UU 961 G-A-AG-G-A C-GAA--G-C NN(-----CG --)GG-GUGU AAA--CUNC| UGAA--C-NC 1021 --GG-GAC-- GA-------- ---------( ------UAA- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CCG-A-GG U-AA--U-AG ---------C 1141 -ACCGGC... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......GGG UAG-C|GGAA 1381 UU-NCYNGA- GUA-GCG(-G USAAA)-UGC -GC-AGAU-A CC-GGAAGG- AACD-CCAA- 1441 -U-N-GC(-G AA-A)GCAG- -CUWCCUN-- ---------- ---------- ---------G 1501 ACG--AU-UU GUGACG-CUG AG-G------ -------CG- C-GAAA-GC- GN-GGG-GA- 1561 GC-AAA-CC- -GG(AUUA-G AUAC)-CCG- ----GGUA-G UC----CAN- G-CC-CN--N 1621 AAC-G-AUGA G--UG-CW-- -------G|G -GU-GU-CCG -NC------- ---------- 1681 -(-AU-CH)- ---------- ---------- ---------- ---------N -UUGGG-UGC 1741 CG--NA---- --SS-(UAA- ---C)G-CG- UHAA-GCACU C|C|A-CCU- G-GGAAGUAC 1801 GGU-N---(G CAA)---G.. .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... .......G|G 2701 G-CW-CU-C- U-AGC-GA-G A-CU-G-CCU --AC(-G--A WW)-GUW-G- -GAGG-A-AG 2761 G-HG-GGG-A UN-ACN--UC -U-NAUC-CG CAU-U-NC-C CUUAC-UGAC -CU--GGGC- 2821 G-ACA-CA-C GUG--CUACA AUGCC-U-GC -CA--CAAAG CGC-U-G-C- GA-CCC-G(G 2881 -UAA)CGGG- ---------- HA-GCCAA-U CGCAC-AAAA -GC-A-GGN- UCAGUUCGGA 2941 U-UGGGGUC- (UGCAAC-U- C)-GACCCCA -UGAAGC-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGCCAU)-G CCG-CGGUG- AAUAC-GUU- CCC-GGG... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Mei.ruber3 4376 bp RNA RNA 02-JUL-1998 DEFINITION Meiothermus ruber.. ACCESSION No information KEYWORDS No information. SOURCE Meiothermus ruber. ORGANISM Meiothermus ruber. REFERENCE 1 AUTHORS Saul,D.J., Rodrigo,A.G., Reeves,R.A., Williams,L.C., Borges ,K.M., Morgan,H.W. and Bergquist,P.L. TITLE Phylogeny of twenty Thermus isolates constructed from 16S rRNA gene sequence data JOURNAL Int. J. Syst. Bacteriol. 43, 754-760 (1993) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: L09672 Former RDP Sids: T.ruber3 NB: former name Thermus ruber BASE COUNT 340 a 358 c 473 g 271 t 2934 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 GCUCAG-GGU -GAAC-GC-- UGGC-GGU-A -UGC-CU--A AGAC-AUGCA A-GUC-GAAC 121 G--GG----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -----CU-GU (--UU----- ---------- ---------- 241 --------AU -)GC-AG--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-CC--- AGUG-GCGG- 361 -A-CG-GG-U GAGU---AAC -AC-GUAGG- UGA--CCU-A C-CCCA---A -AGUC-U-GG 421 -GAC-AA-CU A--------- ------GG-- A(-GAAA-)U -CUUA-G--C UAAUCCU-GG 481 AU-GUG---- ---------- -------G-A CA-U--C--- ---UAC-(-- --------UU 541 UG-------- -)-GUG---- -G-AU----G UU--UAAA-- ---GC----- ---------- 601 --(------- ---UUCG--- ---)------ ---------| -----G--C- G--CUU---- 661 ----UGGG-- AUG---G-|G CCUGC----- -GG|----CG C--AUCA-G- GUA-G---UU 721 GG-UG-GG-( GU-AAU-GG) -C-CUACC-A A|-GCC-GA- CGA------- -----CG-CG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAC ----GA-U-- CAG-C|C-AC -AGGGG-U-A 841 (CUGA-GA-C ACG)--GACC -CCA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-U 901 AGG-AAUCUU C-CGCAAU-- GG-GC-(GAA A)-GCC-UGA CGGA|-GCGA UACC-GC-UU 961 G-A-AG-G-A C-GAA--G-C CC(--UU-CG --)GG-GUGU AAA--CUUC| UGAA--C-UC 1021 --GG-GAC-- GA-------- ---------( ------UAA- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CCG-A-GG U-AA--U-AG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGUG-C-- 1201 GAG-CGUUAC CC-GGAUUUA -CU-GGGU|G UAAA-GGGC- GUG-UAG-GC -G|-GU-CU- 1261 C-UC-AAG|U CCG---AUGC U-AAA-GA-C CG-AAG-C(- UC-A)A-CUU -CG-G-GGG- 1321 -UGCG-UUGG A-UAC-UGUG A-GGCUA-GA CGG-----UC G-GA-GAGGG UAG-C|GGAA 1381 UU-UCCGGA- GUA-GCG(-G UGAAA)-UGC -GC-AGAU-A CC-GGAAGG- AACG-CCAA- 1441 -U-A-GC(-G AA-A)GCAG- -CUACCUG-- ---------- ---------- ---------G 1501 ACG--AU-UU GUGACG-CUG AG-G------ -------CG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CC- -GG(AUUA-G AUAC)-CCG- ----GGUA-G UC----CAC- G-CC-CU--A 1621 AAC-G-AUGA G--UG-CU-- -------G|G -GU-GU-CCG -AC------- ---------- 1681 -(-AU-CU)- ---------- ---------- ---------- ---------G -UUGGG-UGC 1741 CG--UA---- --GC-(UAA- ---C)G-CG- UUAA-GCACU C|C|A-CCU- G-GGAAGUAC 1801 GGU-C---(G CAA)---G-A CU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGCAGA 1921 A-CCUUA-CC AGG-UC-UUG ACA-UC|--- ---------C ---ACGG--- -AA----CCC 1981 -UGG-U--(- GAAA-)-GCC -G-GGGG--- UG-------- -CCC------ --(GC----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------A A-)------- -GGG------ ----AG---| CCG-UG-AGA |---C|A--G 2161 GU-GC-UGCA UG|G-UCG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-CU-G |-UU--GCU- 2281 AG--UUGC-C AU-CAG---- ---------- ---------- ----(---UU ---CGG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CUG|G 2701 G-CA-CU-C- U-AGC-GA-G A-CU-G-CCU --AC(-G--A AA)-GUA-G- -GAGG-A-AG 2761 G-CG-GGG-A UG-ACG--UC -U-GAUC-CG CAU-G-GC-C CUUAC-G-AC -CU--GGGC- 2821 G-ACA-CA-C GUG--CUACA AUGCC-U-GC -CA--CAAAG CGC-U-G-C- GA-CCC-G(G 2881 -UAA)CGGG- ---------- AA-GCCAA-U CGCAC-AAAA -GC-A-GGC- UCAGUUCGGA 2941 U-UGGGGUC- (UGCAAC-U- C)-GACCCCA -UGAAGC-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGCCAU)-G CCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-AAG--- --CCA-UGGG A--GU-GGG- UU-UU-GCCU -GAA-G-UCG 3121 C-CGG-G--- -AG-CC---- ---------- ---------- -----(---- --ACA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GG----C-A G-GC-GC-CU A-GGGU-AAG GCU-CA-UG- ACU-GGGG-C 3301 U---AAGUC- GUAA-CAAGG UAGCU-GUAC C(G....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Mei.ruber4 4376 bp RNA RNA 02-JUL-1998 DEFINITION Meiothermus ruber str. Loginova 21 ATCC 35948. ACCESSION No information KEYWORDS No information. SOURCE Meiothermus ruber str. Loginova 21 ATCC 35948. ORGANISM Meiothermus ruber. REFERENCE 1 AUTHORS Embley,T.M., Thomas,R. and Williams,R. TITLE Reduced thermophilic bias in the 16S rDNA sequence from Thermus ruber provides further support for a relationship between Thermus and Deinococcus JOURNAL Syst. Appl. Microbiol. 16, 25-29 (1993) STANDARD No information COMMENTS Organism information Culture collection: ATCC 35948 Sequence information (bases 1 to 4376) Corresponding GenBank entry: Z15059 Former RDP Sids: T.ruber4 isolate_name= Loginova 21 NB: former name Thermus ruber BASE COUNT 337 a 354 c 468 g 268 t 2949 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... ...C-GGU-A -UGC-CU--A AGAC-AUGCA A-GUC-GAAC 121 G--GG----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -----CU-GU (--UU----- ---------- ---------- 241 --------AU -)GC-AG--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-CC--- AGUG-GCGG- 361 -A-CG-GG-U GAGU---AAC -AC-GUAGG- UGA--CCU-A C-CCCA---A -AGUC-U-GG 421 -GAC-AA-CU A--------- ------GG-- A(-GAAA-)U -CUUA-G--C UAAUCCU-GG 481 AU-GUG---- ---------- -------G-A CA-U--C--- ---UAC-(-- --------UU 541 UG-------- -)-GUG---- -G-AU----G UU--UAAA-- ---GC----- ---------- 601 --(------- ---UUCG--- ---)------ ---------| -----G--C- G--CUU---- 661 ----UGGG-- AUG---G-|G CCUGC----- -GG|----CG C--AUCA-G- GUA-G---UU 721 GG-UG-GG-( GU-AAU-GG) -C-CUACC-A A|-GCC-GA- CGA------- -----CG-CG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAC ----GA-U-- CAG-C|C-AC -AGGGG-U-A 841 (CUGA-GA-C ACG)--GACC -CCA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-U 901 AGG-AAUCUU C-CGCAAU-- GG-GC-(GAA A)-GCC-UGA CGGA|-GCGA UACC-GC-UU 961 G-A-AG-G-A C-GAA--G-C CC(--UU-CG --)GG-GUGU AAA--CUUC| UGAA--C-UC 1021 --GG-GAC-- GA-------- ---------( ------UAA- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CCG-A-GG U-AA--U-AG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGUG-C-- 1201 GAG-CGUUAC CC-GGAUUUA -CU-GGGU|G UAAA-GGGC- GUG-UAG-GC -G|-GU-CU- 1261 C-UC-AAG|U CCG---AUGC U-AAA-GA-C CG-AAG-C(- UC-A)A-CUU -CG-G-GGG- 1321 -UGCG-UUGG A-UAC-UGUG A-GGCUA-GA CGG-----UC G-GA-GAGGG UAG-C|GGAA 1381 UU-UCCGGA- GUA-GCG(-G UGAAA)-UGC -GC-AGAU-A CC-GGAAGG- AACG-CCAA- 1441 -U-A-GC(-G AA-A)GCAG- -CUACCUG-- ---------- ---------- ---------G 1501 ACG--AU-UU GUGACG-CUG AG-G------ -------CG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CC- -GG(AUUA-G AUAC)-CCG- ----GGUA-G UC----CAC- G-CC-CU--A 1621 AAC-G-AUGA G--UG-CU-- -------G|G -GU-GU-CCG -AC------- ---------- 1681 -(-AU-CU)- ---------- ---------- ---------- ---------G -UUGGG-UGC 1741 CG--UA---- --GC-(UAA- ---C)G-CG- UUAA-GCACG C|C|A-CCU- G-GGAAGUAC 1801 GGU-C---(G CAA)---G-A CU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGCAGA 1921 A-CCUUA-CC AGG-UC-UUG ACA-UC|--- ---------C ---ACGG--- -AA----CCC 1981 -UGG-U--(- GAAA-)-GCC -G-GGGG--- UG-------- -CCC------ --(GC----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------A A-)------- -GGG------ ----AG---| CCG-UG-AGA |---C|A--G 2161 GU-GC-UGCA UG|G-UCG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-CU-G |-UU--GCU- 2281 AG--UUGC-C AU-CAG---- ---------- ---------- ----(---UU ---CGG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CUG|G 2701 G-CA-CU-C- U-AGC-GA-G A-CU-G-CCU --AC(-G--A AA)-GUA-G- -GAGG-A-AG 2761 G-CG-GGG-A UG-ACG--UC -U-GAUC-CG CAU-G-GC-C CUUAC-G-AC -CU--GGGC- 2821 G-ACA-CA-C GUG--CUACA AUGCC-U-GC -CA--CAAAG CGC-U-G-C- GA-CCC-G(G 2881 -UAA)CGGG- ---------- AA-GCCAA-U CGCAC-AAAA -GC-A-GGC- UCAGUUCGGA 2941 U-UGGGGUC- (UGCAAC-U- C)-GACCCCA -UGAAGC-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGCCAU)-G CCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-AAG--- --CCA-UGGG A--GU-GGG- UU-UU-GCCU -GAA-G-UCG 3121 C-CGG-G--- -NG-CC---- ---------- ---------- -----(---- --ACA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GG----C-A G-GC-GC-CU A-GGGU-AAG GCU-CA-UG- ACU-GGGG-C 3301 U---AAGUC- GUAA-CAAGG UNNCU-GUAC C(GGA-A)GG U......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS 2.4.2.2-DE 4376 bp RNA RNA 09-JAN-1999 DEFINITION 2.4.2.2 DEINOCOCCUS_GROUP. ACCESSION No information KEYWORDS No information. SOURCE 2.4.2.2 DEINOCOCCUS_GROUP. ORGANISM 2.4.2.2 DEINOCOCCUS_GROUP. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 0 a 0 c 0 g 0 t 4376 others ORIGIN 1 x~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~-- ------~~~~ 541 ~~~~~~---- -~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~---~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- 1681 -(~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- -------~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~----~~~ 1981 ~~~~-~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~--- --~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~------ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~---~~ ---~~~--~~ 2341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- 3181 ---------- ---------- ---------- ------~)~~ ~~~~~~~~~~ ~~~~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS D.prtlytic 4376 bp RNA RNA 02-JUL-1998 DEFINITION Deinococcus proteolyticus. ACCESSION No information KEYWORDS No information. SOURCE Deinococcus proteolyticus. ORGANISM Deinococcus proteolyticus. REFERENCE 1 AUTHORS Rainey,F.A., Nobre,M.F., Schumann,P., Stackebrandt,E. and daCosta,M.S. TITLE Phylogenetic diversity of the deinococci as determined by 16S ribosomal DNA sequence comparison JOURNAL Int. J. Syst. Bacteriol. 47 (2), 510-514 (1997) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: Y11331|g2108293 NB: Added by Bergey's to RDP Release 6.0 tree BASE COUNT 356 a 343 c 485 g 282 t 2910 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 ....AG-GGU -GAAC-GC-- UGGC-GGC-G -UGC-UU--A AGAC-AUGCA A-GUC-GAAC 121 G--GG----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ------G-UC (--UU----- ---------- ---------- 241 --------CG -)GA-C---- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-CC--- AGUG-GCGC- 361 -A-CG-GG-U GAGU---AAC -AC-GUGAC- UGA--CCU-A C-CCCG---A -AGUU-C-UG 421 -AAU-AA-CC U--------- ------GG-- C(-GAAA-)G -UCGG-G--C UAAUACA-GG 481 AU-GCG---- ---------- -------C-A GU-A--U--- ---CGC-(-- --------UG 541 UG-------- -)-GCG---- -A-UA----C UG--CAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--CUU---- 661 ----CGGG-- AUG---G-|G GUUGC----- -GU|----UC C--AUCA-G- CUA-G---UU 721 GG-UA-GG-( GU-AAA-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----CG-GA 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGU ----GG-C-- CGG-C|C-AC -AGGGG-C-A 841 (CUGA-GA-C ACG)--GGCC -CCA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-U 901 AGG-AAUCUU C-CACAAU-- GG-GC-(GAA A)-GCC-UGA UGGA|-GCGA CGCC-GC-GU 961 G-A-GG-G-A U-GAC--G-G UC(--UU-CG --)GA-UUGU AAA--CCUC| UGAA--C-UA 1021 --GG-GAC-- GA-AAGA-CG --C------( -----GUAA- ---------) ------G-CG 1081 ---------- -------GGA U-GA-CGGU- A-CCU-A-GG U-AA--U-AG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGUG-C-- 1201 GAG-CGUUAC CC-GGAAUCA -CU-GGGC|G UAAA-GGGC- GUG-UAC-GC -G|-GC-UU- 1261 G-UU-AAG|U CUG---GUUU U-AAA-GG-C UG-AGG-C(- UC-A)A-CCU -CA-G-AAA- 1321 -UGGA-CUGG A-UAC-UGGC A-AGCUU-GA CCU-----CU G-GA-GAGGU AAC-U|GGAA 1381 UU-UCUGGU- GUA-GCG(-G UGGAA)-UGC -GU-AGAU-A CC-AGAAGG- AACA-CCAA- 1441 -U-G-GC(-G AA-G)GCAA- -GUUACUG-- ---------- ---------- ---------G 1501 ACA--GA-AG GUGACG-CUG AG-G------ -------CG- C-GAAA-GU- GU-GGG-GA- 1561 GC-GAA-CC- -GG(AUUA-G AUAC)-CCG- ----GGUA-G UC----CAC- A-CC-CU--A 1621 AAC-G-AUGU A--CG-UU-- -------G|G -CC-UA-GCG -CA-G----- ---------- 1681 -(-GA-UG)- ---------- ---------- ---------- --------CU -GUGUU-GGA 1741 CG--AA---- --GC-(UAA- ---C)G-CG- AUAA-ACGUA C|C|G-CCU- G-GGAAGUAC 1801 GGC-C---(G CAA)---G-G UU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AGA-CC-UUG ACA-UG|--- ---------C ---ACGG--- -AA----CGC 1981 -GCU-G--(- GAAG-)-CAG -C-GCGG--- UG-------- -C-CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-G------ ----AA---| CCG-UG-ACA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-CC--UUU- 2281 AG--UUGC-C AG-CA----- ---------- ---------- ---U(---UU ---GGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AGA-GG-G A-CU-G-CCU --GU(-G--A AA)-GCA-G- -GAGG-A-AG 2761 G-CG-GGG-A UG-ACG--UC -U-AGUC-AG CAU-G-GU-C CUUAC-G-GU -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-C-GG -UA--CAACG CGC-A-G-C- GA-ACU-U(G 2881 -UGA)GAGU- ---------- AA-GCGAA-U CGCUA-AAAG -CC-G-GCC- UCAGUUCAGA 2941 U-UGGAGUC- (UGCAAC-U- C)-GACUCCA -UGAAGU-UG -GAAU-CGC- -UAGUA-AUC 3001 GU-GGG-(UC -AGC-AU)-A CCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-AGA- UU-GC-AGCU -GAA-A-CCG 3121 C-UGG-G--- -AG-CC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GG----C-A G-GC-GU-CU A-GGCU-GUG GUU-UA-UG- ACU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAGGU-GUAC C(GGA-A)GG UGCGGC--UG GA~~~~~~~~ 3361 ~~~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS D.radiophl 4376 bp RNA RNA 02-JUL-1998 DEFINITION Deinococcus radiophilus. ACCESSION No information KEYWORDS No information. SOURCE Deinococcus radiophilus. ORGANISM Deinococcus radiophilus. REFERENCE 1 AUTHORS Rainey,F.A., Nobre,M.F., Schumann,P., Stackebrandt,E. and daCosta,M.S. TITLE Phylogenetic diversity of the deinococci as determined by 16S ribosomal DNA sequence comparison JOURNAL Int. J. Syst. Bacteriol. 47 (2), 510-514 (1997) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: Y11333|g2108295 NB: Added by Bergey's to RDP Release 6.0 tree BASE COUNT 353 a 343 c 489 g 285 t 2906 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 ....AG-GGU -GAAC-GC-- UGGC-GGC-G -UGC-UU--A AGAC-AUGCA A-GUC-GAAC 121 G--GC----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -----CC-AG (--CU----- ---------- ---------- 241 --------UG -)CU-GG--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-GC--- AGUG-GCGC- 361 -A-CG-GG-U GAGU---AAC -AC-GUGAC- UGA--CCU-A C-CCCG---A -AGUU-C-UG 421 -AAU-AA-CC U--------- ------GG-- C(-GAAA-)G -UCGG-G--C UAAUACA-GG 481 AU-GUG---- ---------- -------C-A GU-A--U--- ---CGC-(-- --------UG 541 UG-------- -)-GCG---- -A-UA----C UG--CAAA-- ---GG----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----C--C- G--CUU---- 661 ----UGGG-- AUG---G-|G GUUGC----- -GU|----UC C--AUCA-G- CUA-G---AU 721 GG-UG-GG-( GU-AAA-GG) -C-CUACC-A U|-GGC-GA- CGA------- -----CG-GA 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGU ----GG-C-- CGG-C|C-AC -AGGGG-C-A 841 (CUGA-GA-C ACG)--GGUC -CCA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-U 901 AGG-AAUCUU C-CACAAU-- GG-GC-(GAA A)-GCC-UGA UGGA|-GCGA CGCC-GC-GU 961 G-A-GG-G-A U-GAC--G-G UU(--UU-CG --)GA-UUGU AAA--CCUC| UGAA--U-CA 1021 --GG-GAC-- GA-AAGG-GC --C------( -----UUUAU ---------) ------G-GC 1081 ---------- -------AGA U-GA-CGGU- A-CCU-G-AG U-AA--U-AG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGUG-C-- 1201 GAG-CGUUAC CC-GGAAUCA -CU-GGGC|G UAAA-GGGC- GUG-UAC-GC -G|-GG-AU- 1261 G-UU-AAG|U CCG---GUCU U-AAA-GA-C CG-CAG-C(- UC-A)A-CUG -CG-G-GAG- 1321 -UGGA-CUGG A-UAC-UGGC A-CUCUG-GA CCU-----CU G-GA-GAGGU AGC-U|GGAA 1381 UU-UCUGGU- GUA-GCG(-G UGGAA)-UGC -GU-AGAU-A CC-AGAAGG- AACA-CCAA- 1441 -U-G-GC(-G AA-G)GCAG- -GUUACUG-- ---------- ---------- ---------G 1501 ACA--GA-AG GUGACG-CUG AG-G------ -------CG- C-GAAA-GU- GU-GGG-GA- 1561 GC-GAA-CC- -GG(AUUA-G AUAC)-CCG- ----GGUA-G UC----CAC- A-CC-CU--A 1621 AAC-G-AUGU A--CG-UU-- -------G|G -CA-GA-UCG -CA-G----- ---------- 1681 -(-GA-UG)- ---------- ---------- ---------- --------CU -GUGAU-UUG 1741 CG--AA---- --GC-(UAA- ---C)G-CG- AUAA-ACGUA C|C|G-CCU- G-GGAAGUAC 1801 GGC-C---(G CAA)---G-G UU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AGA-CC-UUG ACA-UC|--- ---------C ---ACAG--- -AA----CGC 1981 -CGC-G--(- GAAG-)-CGC -G-GCGG--- UG-------- -C-CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-G------ ----AA---| CUG-UG-AGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-CC--UUU- 2281 AG--UUGC-C AG-CA----- ---------- ---------- ---U(---UU ---AAG--)U 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AGA-GG-G A-CU-G-CCU --GU(-G--A AA)-GCA-G- -GAGG-A-AG 2761 G-CG-GGG-A UG-ACG--UC -U-AGUC-AG CAU-G-GU-C CUUAC-G-GU -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-C-AG -UA--CAACG CGC-A-G-C- AA-ACU-U(G 2881 -CGA)GAGU- ---------- GA-GCGAA-U CGCUA-AAAG -CU-G-GCC- UCAGUUCAGA 2941 U-UGGAGUC- (UGCAAC-U- C)-GACUCCA -UGAAGU-UG -GAAU-CGC- -UAGUA-AUC 3001 GU-GGG-(UC -AGC-AU)-A CCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-AGA- UU-GC-AGCU -GAA-A-CCG 3121 C-UGG-G--- -AG-CC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GG----C-A G-GC-GU-CU A-GGCU-GUG GUU-UA-UG- ACU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAGGU-GUAC C(GGA-A)GG UGCGGC--UG GA~~~~~~~~ 3361 ~~~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS D.radiodu2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Deinococcus radiodurans. ACCESSION No information KEYWORDS No information. SOURCE Deinococcus radiodurans. ORGANISM Deinococcus radiodurans. REFERENCE 1 AUTHORS Rainey,F.A., Nobre,M.F., Schumann,P., Stackebrandt,E. and daCosta,M.S. TITLE Phylogenetic diversity of the deinococci as determined by 16S ribosomal DNA sequence comparison JOURNAL Int. J. Syst. Bacteriol. 47 (2), 510-514 (1997) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: Y11332|g2108294 NB: Added by Bergey's to RDP Release 6.0 tree BASE COUNT 362 a 341 c 474 g 289 t 2910 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 ....AG-GGU -GAAC-GC-- UGGC-GGC-G -UGC-UU--A AGAC-AUGCA A-GUC-GAAC 121 G--CG----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ------G-UC (--UU----- ---------- ---------- 241 --------CG -)GA-C---- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-CG--- AGUG-GCGC- 361 -A-CG-GG-U GAGU---AAC -AC-GUAAC- UGA--CCU-A C-CCAG---A -AGUC-A-CG 421 -AAU-AA-CU G--------- ------GC-- C(-GAAA-)G -GUCC-G--C UAAUACG-UG 481 AU-GUG---- ---------- -------G-U GA-U--G--- ---CAC-(-- --------CG 541 UG-------- -)-GUG---- -C-AU----C AC--UAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--CUU---- 661 ----CUGG-- AUG---G-|G GUUGC----- -GU|----UC C--AUCA-G- CUG-G---UU 721 GG-UG-GG-( GU-AAA-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----CG-GA 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGU ----GG-C-- CGG-C|C-AC -AGGGG-C-A 841 (CUGA-GA-C ACG)--GGUC -CCA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-U 901 AGG-AAUCUU C-CACAAU-- GG-GC-(GCA A)-GCC-UGA UGGA|-GCGA CGCC-GC-GU 961 G-A-GG-G-A U-GAA--G-G UU(--UU-CG --)GA-UCGU AAA--CCUC| UGAA--U-CU 1021 --GG-GAC-- GA-AAGA-GC --C------( -----UUAG- ---------) ------G-GC 1081 ---------- -------AGA U-GA-CGGU- A-CCA-G-AG U-AA--U-AG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGUG-C-- 1201 AAG-CGUUAC CC-GGAAUCA -CU-GGGC|G UAAA-GGGC- GUG-UAC-GC -G|-GA-AA- 1261 U-UU-AAG|U CUG---GUUU U-AAA-GA-C CG-GGG-C(- UC-A)A-CCU -CG-G-GGA- 1321 -UGGA-CUGG A-UAC-UGGA U-UUCUU-GA CCU-----CU G-GA-GAGGU AAC-U|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGGAA)-UGC -GU-AGAU-A CC-AGGAGG- AACA-CCAA- 1441 -U-G-GC(-G AA-G)GCAA- -GUUACUG-- ---------- ---------- ---------G 1501 ACA--GA-AG GUGACG-CUG AG-G------ -------CG- C-GAAA-GU- GU-GGG-GA- 1561 GC-AAA-CC- -GG(AUUA-G AUAC)-CCG- ----GGUA-G UC----CAC- A-CC-CU--A 1621 AAC-G-AUGU A--CG-UU-- -------G|G -CU-AA-GCG -CA-G----- ---------- 1681 -(-GA-UG)- ---------- ---------- ---------- --------CU -GUGCU-UGG 1741 CG--AA---- --GC-(UAA- ---C)G-CG- AUAA-ACGUA C|C|G-CCU- G-GGAAGUAC 1801 GGC-C---(G CAA)---G-G UU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AGG-UC-UUG ACA-UG|--- ---------C ---UAGG--- -AA----CUU 1981 -UGC-A--(- GAGA-)-UGC -A-GAGG--- UG-------- -C-CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-G------ ----AA---| CCU-AG-ACA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-CC--UUU- 2281 AG--UUGU-C AG-CA----- ---------- ---------- ---U(---UC ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 A-CA-CU-C- U-AGA-GG-G A-CU-G-CCU --AU(-G--A AA)-GUA-G- -GAGG-A-AG 2761 G-CG-GGG-A UG-ACG--UC -U-AGUC-AG CAU-G-GU-C CUUAC-G-UC -CU--GGGC- 2821 G-ACA-CA-C GUG--CUACA AUGGG-U-AG -GA--CAACG CGC-A-G-C- AA-ACC-C(G 2881 -CGA)GGGU- ---------- AA-GCGAA-U CGCUA-AAAC -CU-A-UCC- CCAGUUCAGA 2941 U-CGGAGUC- (UGCAAC-U- C)-GACUCCG -UGAAGU-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGG-(UC -AGC-AU)-A CCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-AGA- UU-GC-AGUU -GAA-A-CCG 3121 C-CGG-G--- -AG-CU---- ---------- ---------- -----(---- -UUGC----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GG----C-A G-GC-GU-CU A-GACU-GUG GUU-UA-UG- ACU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAACU-GUAC C(GGA-A)GG UGCGGC--UG GA~~~~~~~~ 3361 ~~~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS D.radiodur 4376 bp RNA RNA 02-JUL-1998 DEFINITION Deinococcus radiodurans. ACCESSION No information KEYWORDS No information. SOURCE Deinococcus radiodurans. ORGANISM Deinococcus radiodurans. REFERENCE 1 AUTHORS Weisburg,W.G., Giovannoni,S.J. and Woese,C.R. TITLE The Deinococcus-Thermus phylum and the effect of rRNA composition on phylogenetic tree construction JOURNAL Syst. Appl. Microbiol. 11, 128-134 (1989) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: M21413 BASE COUNT 365 a 351 c 483 g 303 t 2874 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~UUUAUGG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GGU -GAAC-GC-- UGGC-GGC-G -UGC-UU--A AGAC-AUGCA A-GUC-GAAC 121 G--CG----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ------G-UC (--UU----- ---------- ---------- 241 --------CG -)GA-C---- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-CG--- AGUG-GCGC- 361 -A-CG-GG-U GAGU---AAC -AC-GUAAC- UGA--CCU-A C-CCAG---A -AGUC-A-UG 421 -AAU-AA-CU G--------- ------GC-- C(-GAAA-)G -GUCA-G--C UAAUACG-UG 481 AU-GUG---- ---------- -------G-U GA-U--U--- ---UGC-(-- --------CG 541 UG-------- -)-GCA---- -A-AU----C AC--UAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--CUU---- 661 ----CUGG-- AUG---G-|G GUUGC----- -GU|----UC C--AUCA-G- CUG-G---UU 721 GG-UG-GG-( GU-AAA-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----CG-GA 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGU ----GG-C-- CGG-C|C-AC -AGGGG-C-A 841 (CUGA-GA-C ACG)--GGUC -CCA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-U 901 AGG-AAUCUU C-CACAAU-- GG-GC-(GCA A)-GCC-UGA UGGA|-GCGA CGCC-GC-GU 961 G-A-GG-G-A U-GAA--G-G UU(--UU-CG --)GA-UCGU AAA--CCUC| UGAA--U-CU 1021 --GG-GAC-- GA-AAGA-GC --C------( -----UUCG- ---------) ------G-GC 1081 ---------- -------AGA U-GA-CGGU- A-CCA-G-AG U-AA--U-AG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGUG-C-- 1201 AAG-CGUUAC CC-GGAAUCA -CU-GGGC|G UAAA-GGGC- GUG-UAG-GC -G|-GA-UA- 1261 U-UU-AAG|U CUG---GUUU U-AAA-GA-C CG-AGG-C(- UC-A)A-CCU -CG-G-GAG- 1321 -UGGA-CUGG A-UAC-UGGA U-GUCUU-GA CCU-----CU G-GA-GAGGU AAC-U|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGGAA)-UGC -GU-AGAU-A CC-AGGAGG- AACA-CCAA- 1441 -U-G-GC(-G AA-G)GCAA- -GUUACUG-- ---------- ---------- ---------G 1501 ACA--GA-AG GUGACG-CUG AG-G------ -------CG- C-GAAA-GU- GU-GGG-GA- 1561 GC-AAA-CC- -GG(AUUA-G AUAC)-CCG- ----GGUA-G UC----CAC- A-CC-CU--A 1621 AAC-G-AUGU A--CG-UU-- -------G|G -CU-AA-GCG -CA-G----- ---------- 1681 -(-GA-UG)- ---------- ---------- ---------- --------CU -GUGCU-UGG 1741 CG--AA---- --GC-(UAA- ---C)G-CG- AUAA-ACGUA C|C|G-CCU- G-GGAAGUAC 1801 GGC-C---(G CAA)---G-G UU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AGG-UC-UUG ACA-UG|--- ---------C ---UAGG--- -AA----GGC 1981 -GCU-G--(- GAGA-)-CAG -C-GCCG--- UG-------- -C-CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-G------ ----AA---| CCU-AG-ACA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-CU--UCC- 2281 AG--UUGC-C AG-CA----- ---------- ---------- ---U(---UC ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-GGA-GG-G A-CU-G-CCU --GU(-G--A AA)-GCA-G- -GAGG-A-AG 2761 G-CG-GGG-A UG-ACG--UC -U-AGUC-AG CAU-G-GU-C CUUAC-G-UC -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGA-U-AG -GA--CAACG CGC-A-G-C- AA-ACA-U(G 2881 -UGA)GUGU- ---------- AA-GCGAA-U CGCUG-AAAC -CU-A-UCC- CCAGUUCAGA 2941 U-CGGAGUC- (UGCAAC-U- C)-GACUCCG -UGAAGU-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGG-(UC -AGC-AU)-A CCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-AGA- UU-GC-AGUU -GAA-A-CCG 3121 C-CGG-G--- -AG-CC---- ---------- ---------- -----(---- -UCAC----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GG----C-A G-GC-GU-CU A-GACU-GUG GUU-UA-UG- ACU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAACU-GUAC C(GGA-A)GG UGCGGU--UG GAUCACCUCC 3361 UUU~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS D.radiopug 4376 bp RNA RNA 02-JUL-1998 DEFINITION Deinococcus radiopugnans. ACCESSION No information KEYWORDS No information. SOURCE Deinococcus radiopugnans. ORGANISM Deinococcus radiopugnans. REFERENCE 1 AUTHORS Rainey,F.A., Nobre,M.F., Schumann,P., Stackebrandt,E. and daCosta,M.S. TITLE Phylogenetic diversity of the deinococci as determined by 16S ribosomal DNA sequence comparison JOURNAL Int. J. Syst. Bacteriol. 47 (2), 510-514 (1997) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: Y11334|g2108296 NB: Added by Bergey's to RDP Release 6.0 tree BASE COUNT 357 a 355 c 485 g 272 t 2907 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 ....AG-GGU -GAAC-GC-- UGGC-GGC-G -UGC-UU--A AGAC-AUGCA A-GUC-GAAC 121 G--GG----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -----CA-UC (--UU----- ---------- ---------- 241 --------CG -)GA-UG--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-CC--- AGUG-GCGC- 361 -A-CG-GG-U GAGU---AGC -GC-GUGAC- UGA--CCU-G C-CCCA---A -AGUCCU-CG 421 -GAU-AA-CU G--------- ------GC-- U(-GAAA-)G -GUCA-G--C UAAUACG-GG 481 AU-GUG---- ---------- -------C-A GC-A--U--- ---CCU-(-- --------CG 541 UG-------- -)-UGG---- -A-UG----U UG--UAAA-- ---GG----- ---------- 601 --(------- --CUAUGA-- ---)------ ---------| -----C--C- G--CUU---- 661 ----UGGG-- AUG---G-|G GUUGC----- -GU|----UC C--AUCA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAA-GG) -C-CCACC-A A|-GGC-GA- CGA------- -----CG-GA 781 U-CA-C-CG| -G-CCU--(G -AGA)-GGGU ----GG-C-- CGG-U|C-AC -AGGGG-C-A 841 (CUGA-GA-C ACG)--GGUC -CCA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-U 901 AGG-AAUCUU C-CCCAAU-- GG-AC-(GAA A)-GUC-UGA GGGA|-GCGA CGCC-GC-GU 961 G-A-GG-G-A U-GAA--G-G UU(--UU-CG --)GA-UCGU AAA--CCUC| UGAA--U-CU 1021 --GG-GAC-- GA-AAGA-CC --GC-----( -----GAAGA ---------) -----GC-GG 1081 ---------- -------AGA U-GA-CGGU- A-CCA-G-AG U-AA--U-AG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGUG-C-- 1201 AAG-CGUUAC CC-GGAAUCA -CU-GGGC|G UAAA-GGGC- GUG-UAC-GC -G|-GC-CU- 1261 G-CC-AAG|U CUG---GUUU U-AAA-GC-C UG-CGG-C(- UC-A)A-CCG -CA-G-AGA- 1321 -UGGA-CUGG A-GAC-UGGU A-GGCUA-GA CCU-----CU G-GA-GAGAG AAC-U|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGGAA)-UGC -GU-AGAU-A CC-AGGAGG- AACA-CCGA- 1441 -U-G-GC(-G AA-G)GCAG- -GUUCUUG-- ---------- ---------- ---------G 1501 ACA--GA-AG GUGACG-CUG AG-G------ -------CG- C-GAAA-GU- GU-GGG-GA- 1561 GC-AAA-CC- -GG(AUUA-G AUAC)-CCG- ----GGUA-G UC----CAC- A-CC-CU--A 1621 AAC-G-AUGU A--CG-UU-- -------G|G -CC-UA-CAG -CA-G----- ---------- 1681 -(-GA-UG)- ---------- ---------- ---------- --------CU -GUUGU-GGG 1741 CG--AA---- --GC-(UAA- ---C)G-CG- AUAA-ACGUA C|C|G-CCU- G-GGAAGUAC 1801 GGC-C---(G CAA)---G-G UU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AGG-UC-UUG ACA-UC|--- ---------C ---CAUG--- -AA----CCC 1981 -CUG-A--(- GAGA-)-UCA -G-GGGG--- UG-------- -C-CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-G------ ----AG---| CAU-GG-AGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-CU-A |-CC--UUC- 2281 AG--UUGC-C AG-CA----- ---------- ---------- ---U(---UC ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-GAC-GG-G A-CU-G-CCU --AU(-G--A AA)-GUA-G- -GAGG-A-AG 2761 G-CG-GGG-A UG-ACG--UC -U-AGUC-AG CAU-G-GU-C CUUAC-G-AC -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGA-U-GG -UA--CAACG CGC-A-G-C- CA-ACU-C(G 2881 -CGA)GAGU- ---------- GA-GCGAA-U CGCCA-AAAG -CC-A-UCC- CCAGUUCAGA 2941 U-CGGAGUC- (UGCAAC-U- C)-GACUCCG -UGAAGU-UG -GAAU-CGC- -UAGUA-AUC 3001 GU-GGG-(UC -AGC-AU)-A CCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-CGGG A--GU-AAA- UU-GC-AGCU -GAA-A-CCG 3121 C-CGG-G--- -AG-CC---- ---------- ---------- -----(---- -GAAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GG----C-A G-GC-GU-CU A-GGCU-GUG GUU-CA-UG- ACU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAACU-GUAC C(GGA-A)GG UGCGG~~~~~ ~~~~~~~~~~ 3361 ~~~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS D.grandis1 4376 bp RNA RNA 02-JUL-1998 DEFINITION Deinococcus grandis. ACCESSION No information KEYWORDS No information. SOURCE Deinococcus grandis. ORGANISM Deinococcus grandis. REFERENCE 1 AUTHORS Rainey,F.A., Nobre,M.F., Schumann,P., Stackebrandt,E. and daCosta,M.S. TITLE Phylogenetic diversity of the deinococci as determined by 16S ribosomal DNA sequence comparison JOURNAL Int. J. Syst. Bacteriol. 47 (2), 510-514 (1997) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: Y11329|g2108292 NB: Added by Bergey's to RDP Release 6.0 tree BASE COUNT 360 a 344 c 474 g 289 t 2909 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 ....AG-GGU -GAAC-GC-- UGGC-GGC-G -UGC-UU--A AGAC-AUGCA A-GUC-GAAC 121 G--GG----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ------C-UC (--UU----- ---------- ---------- 241 --------CG -)GA-G---- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-CC--- AGUG-GCGC- 361 -A-CG-GG-U GAGU---AAC -GC-GUAAC- UGA--CCU-A C-CCCA---A -AGUC-G-CG 421 -GAU-AA-CG A--------- ------UU-- C(-GAAA-)G -AAUC-G--C UAAUACG-UG 481 AU-GUG---- ---------- -------C-U GU-U--C--- ---CAU-(-- --------CG 541 UG-------- -)-UUG---- -G-AU----C AG--UAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--U- G--CUU---- 661 ----UGGG-- AUG---G-|G GUUGC----- -GU|----UC C--AUCA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAA-GG) -C-CCACC-A A|-GGC-GA- CGA------- -----CG-GA 781 U-CG-C-CG| -G-CCU--(G -AGA)-GGGU ----GG-C-- CGG-C|C-AC -AGGGG-C-A 841 (CUGA-GA-C ACG)--GGUC -CCA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-U 901 AGG-AAUCUU C-CACAAU-- GG-GC-(GAA A)-GCC-UGA UGGA|-GCGA CGCC-GC-GU 961 G-A-GG-G-A U-GAA--G-G UC(--UU-CG --)GA-UCGU AAA--CCUC| UGAA--U-CA 1021 --GG-GAC-- GA-AAGA-CA --C------( -----UUUAU ---------) ------G-UG 1081 ---------- -------GGA U-GA-CGGU- A-CCU-G-AG U-AA--U-AG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGUG-C-- 1201 AAG-CGUUAC CC-GGAAUCA -CU-GGGC|G UAAA-GGGC- GUG-UAC-GC -G|-GA-CA- 1261 C-UU-AAG|U CUG---GUUU U-AAA-GA-C UG-CGG-C(- UC-A)A-CCG -CA-G-GGA- 1321 -UGGA-CUGG A-UAC-UGGG U-GUCUU-GA CCU-----CU G-GA-GAGAG AAC-U|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGGAA)-UGC -GU-AGAU-A CC-AGGAGG- AACA-CCAA- 1441 -U-G-GC(-G AA-G)GCAG- -GUUCUUG-- ---------- ---------- ---------G 1501 ACA--GA-AG GUGACG-CUG AG-G------ -------CG- C-GAAA-GU- GU-GGG-GA- 1561 GC-GAA-CC- -GG(AUUA-G AUAC)-CCG- ----GGUA-G UC----CAC- A-CC-CU--A 1621 AAC-G-AUGU A--CG-UU-- -------G|G -CU-AA-CCG -CA-G----- ---------- 1681 -(-GA-UG)- ---------- ---------- ---------- --------CU -GUGGU-UGG 1741 CG--AA---- --GC-(UAA- ---C)G-CG- AUAA-ACGUA C|C|G-CCU- G-GGAAGUAC 1801 GGC-C---(G CAA)---G-G UU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AGG-UC-UUG ACA-UG|--- ---------C ---AUGG--- -AA----CUC 1981 -CUG-A--(- GAGA-)-UCA -G-GAGG--- UG-------- -C-CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-G------ ----AG---| CCA-UG-ACA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-A |-CC--UUU- 2281 AG--UUGC-C AG-CA----- ---------- ---------- ---U(---UG ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AGA-GG-G A-CU-G-CCU --AU(-G--A AA)-GUA-G- -GAGG-A-AG 2761 G-CG-GGG-A UG-ACG--UC -U-AGUC-AG CAU-G-GU-C CUUAC-G-AC -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGA-U-GG -GA--CAACG CGC-A-G-C- CA-ACU-U(G 2881 -CGA)AAGU- ---------- GA-GCGAA-U CGCUG-AAAC -CC-A-UCC- CCAGUUCAGA 2941 U-CGGAGUC- (UGCAAC-U- C)-GACUCCG -UGAAGU-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-AGG-(UC -AGC-AU)-A CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-AAA- UU-GC-AGCU -GAA-A-CCG 3121 C-CGG-G--- -AG-CC---- ---------- ---------- -----(---- -UCAC----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GG----C-A G-GC-GU-CU A-GGCU-GUG GUU-CA-UG- ACU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAACU-GUAC C(GGA-A)GG UGCGGC--UG GA~~~~~~~~ 3361 ~~~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS D.spS34 4376 bp RNA RNA 02-JUL-1998 DEFINITION Deinococcus sp. str. S34. ACCESSION No information KEYWORDS No information. SOURCE Deinococcus sp. str. S34. ORGANISM Deinococcus sp. REFERENCE 1 AUTHORS Mitsui,H., Hattori,R., Watanabe,H., Tonosaki,A. and Hattori,T. TITLE Salt-induced morphological change in salt-sensitive soil bacteria - fine structure of a bacterium S34 in relation to inorganic cation concentration - JOURNAL Unpublished (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: D78365|g1100735 Former RDP Sids: str.S34 isolate_name= S34 BASE COUNT 328 a 313 c 426 g 260 t 3049 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......GGU -GAAC-GC-- UGGC-GGC-G -UGC-UU--A AGAC-AUGCA A-GUC-GAAC 121 G--GG----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ------C-UC (--UU----- ---------- ---------- 241 --------CG -)GA-G---- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-CU--- AGUG-GCGC- 361 -A-CG-GG-U GAGU---AAC -GC-GUAAC- UGA--CCU-A C-CCCA---A -AGUC-G-CG 421 -GAU-AA-CG A--------- ------UU-- C(-GAAA-)G -AAUC-G--C UAAUACG-UG 481 AU-GUG---- ---------- -------C-U GC-U--C--- ---CCU-(-- --------CC 541 UG-------- -)-UGG---- -G-AU----C AG--UAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--U- G--CUU---- 661 ----UGGG-- AUG---G-|G GUUGC----- -GU|----UC C--AUCA-G- CUA-G---UU 721 GG-CG-GG-( GU-AAA-GG) -C-CCACC-A A|-GGC-GA- CGA------- -----CG-GA 781 U-AG-C-CG| -G-CCU--(G -AAA)-GGGU ----GG-C-- CGG-C|C-AC -AGGGG-C-A 841 (CUGA-GA-C ACG)--GGUC -CCA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-U 901 AGG-AAUCUC C-CACAAU-- GG-GC-(GAA A)-G-C-UGA UGGA|-GCGA CGCC-GC-GU 961 G-A-GG-A-A U-GAA--G-G UC(--UU-CG --)GA-UCGU AAA--CCUC| UGAA--U-CA 1021 --GG-GAC-- GA-AAGA-CA --C------( -----UUCG- ---------) ------G-UG 1081 ---------- -------GGA U-GA-CGGU- A-CCU-G-AG U-AA--U-AG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGUG-C-- 1201 AAG-CGUUAC CC-GGAAUCA -CU-GGGC|G UAAA-GGGC- GUG-UAG-GC -G|-GA-CA- 1261 C-UU-AAG|U CUG---GUUU U-AAA-GA-C UG-CGG-C(- UC-A)A-CCG -CA-G-GGA- 1321 -UGGA-CUGG A-UAC-UGGG U-GUCUU-GA CCU-----CU G-GA-GAGAG AAC-U|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGGAA)-UGC -GU-AGAU-A CC-AGGAGG- AACA-CCAA- 1441 -U-G-GC(-G AA-G)GCAG- -GUUCUUG-- ---------- ---------- ---------G 1501 ACA--GA-AG GUGACG-CUG AG-G------ -------CG- C-GAAA-GU- GU-GGG-GA- 1561 GC-GAA-CC- -GG(AUUA-G AUAC)-CCG- ----GGUA-G UC----CAC- A-CC-CU--A 1621 AAC-G-AUGU A--CG-UU-- -------G|G -CU-AA-CCG -CA-G----- ---------- 1681 -(-GA-UG)- ---------- ---------- ---------- --------CU -GUGGU-UGG 1741 CG--AA---- ---C-(UAA- ---C)G-CG- AUAA-ACGUA C|C|G-CCU- G-GGAAGUAC 1801 GGC-C---(G CAA)---G-G UU-GAAACUC -AAA-GGAAU UU-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AGG-UC-UUG ACA-UG|--- ---------C ---AUGG--- -AA----CUC 1981 -CUG-A--(- GAGA-)-UCA -G-GAGG--- UG-------- -C-CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-G------ ----AA---| CCA-UG-ACA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-A |-CC--UUU- 2281 AG--UUGC-C AG-CA----- ---------- ---------- ---U(---UG ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AGA-GG-G A-CU-G-CCU --AU(-G--A AA)-GUA-G- -GAGG-A-AG 2761 G-CG-GGG-A UG-ACG--UC -U-AGUC-AG CAU-G-GU-C CUUAC-G-AC -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGA-U-GG -GA--CAACG CGC-A-G-C- CA-ACU-C(G 2881 -CGA)GAGU- ---------- GA-GCGAA-U CGCUG-AAAC -CC-A-UCC- CCAGUUCAGA 2941 U-CGGAGUC- (UGCAAC-U- C)-GACUCCG -UGAAGU-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-AGG-(UC -AGC-AU)-A CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UU........ 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS 2.4.2.3-EN 4376 bp RNA RNA 09-JAN-1999 DEFINITION 2.4.2.3 ENVIRONMENTAL_CLONE_OS_M. ACCESSION No information KEYWORDS No information. SOURCE 2.4.2.3 ENVIRONMENTAL_CLONE_OS_M. ORGANISM 2.4.2.3 ENVIRONMENTAL_CLONE_OS_M. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 0 a 0 c 0 g 0 t 4376 others ORIGIN 1 x~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~-- ------~~~~ 541 ~~~~~~---- -~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~---~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- 1681 -(~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- -------~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~----~~~ 1981 ~~~~-~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~--- --~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~------ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~---~~ ---~~~--~~ 2341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- 3181 ---------- ---------- ---------- ------~)~~ ~~~~~~~~~~ ~~~~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS env.OS_M 4376 bp RNA RNA 02-JUL-1998 DEFINITION Octopus Spring. ACCESSION No information KEYWORDS No information. SOURCE Octopus Spring. ORGANISM Octopus Spring. REFERENCE 1 AUTHORS Ward,D.M., Bateson,M.M., Weller,R. and Ruff-Roberts,A.L. TITLE Ribosomal RNA analysis of microorganisms as they occur in nature JOURNAL Adv. Microb. Ecol. 12, 219-286 (1992) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: L04708 library_source= Octopus Spring microbial mat DNA from Yellowstone NP NB: IDENT:general eubacteria; ? Fibrobacter/Deino relative? BASE COUNT 69 a 82 c 85 g 53 t 4087 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)..CCGC AA-------- CGAG-C--GC AACCC-CU-A |-CU--UCU- 2281 AG--UUGC-C AC-CGG---- ---------- ---------- ---G(---UA ---AAG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CCG|A 2701 G-CA-CU-C- U-AGA-GG-A A-CU-G-CCU --AC(-GC-A AG)-UAG-C- -GAGG-A-AG 2761 G-CG-GGG-A UG-ACG--UC -A-AGUC-CG CAU-G-GC-C CUUAC-N-NC -UA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGG-C-GU -UA--CAACG GGU-U-G-C- UA-AG--N(N 2881 -CGA)GGCG- ---------- GA-GCUAA-U CCCUA-AAAG -GC-G-NCC- UCAGUUCGGA 2941 U-UGGAGUC- (UGCAAC-U- C)-GACUCCA -UGAAGC-CG -GAAU-UGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGS-SC)-G CCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUG....... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS 2.5-PARAPH 4376 bp RNA RNA 09-JAN-1999 DEFINITION 2.5 PARAPHYLETIC_ASSEMBLAGE. ACCESSION No information KEYWORDS No information. SOURCE 2.5 PARAPHYLETIC_ASSEMBLAGE. ORGANISM 2.5 PARAPHYLETIC_ASSEMBLAGE. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 0 a 0 c 0 g 0 t 4376 others ORIGIN 1 x~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~-- ------~~~~ 541 ~~~~~~---- -~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~---~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- 1681 -(~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- -------~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~----~~~ 1981 ~~~~-~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~--- --~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~------ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~---~~ ---~~~--~~ 2341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- 3181 ---------- ---------- ---------- ------~)~~ ~~~~~~~~~~ ~~~~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS 2.5.1-SYNE 4376 bp RNA RNA 09-JAN-1999 DEFINITION 2.5.1 SYNERGISTES_ASSEMBLAGE. ACCESSION No information KEYWORDS No information. SOURCE 2.5.1 SYNERGISTES_ASSEMBLAGE. ORGANISM 2.5.1 SYNERGISTES_ASSEMBLAGE. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 0 a 0 c 0 g 0 t 4376 others ORIGIN 1 x~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~-- ------~~~~ 541 ~~~~~~---- -~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~---~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- 1681 -(~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- -------~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~----~~~ 1981 ~~~~-~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~--- --~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~------ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~---~~ ---~~~--~~ 2341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- 3181 ---------- ---------- ---------- ------~)~~ ~~~~~~~~~~ ~~~~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS env.OS_L 4376 bp RNA RNA 02-JUL-1998 DEFINITION Octopus Spring. ACCESSION No information KEYWORDS No information. SOURCE Octopus Spring. ORGANISM Octopus Spring. REFERENCE 1 AUTHORS Ward,D.M., Bateson,M.M., Weller,R. and Ruff-Roberts,A.L. TITLE Ribosomal RNA analysis of microorganisms as they occur in nature JOURNAL Adv. Microb. Ecol. 12, 219-286 (1992) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: L04707 library_source= Octopus Spring microbial mat DNA from Yellowstone NP NB: IDENT:general eubacteria; no specific relative yet BASE COUNT 253 a 278 c 358 g 186 t 3301 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( GU-AAU-GG) -N-NNACC-A A|-GGC-KA- NKW------- -----UC-GG 781 U-AG-Y-YN| -N-YYU--(N -NGW)-GKGC ----GG-U-- CNN-N|N-AC -ACUGG-N-A 841 (CUGA-AA-C ACG)--GGCN -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-C 901 GGG-AAUUUU G-GGCAAU-- GG-GC-(GCA A)-GCC-UGA CCCA|-GCGA CGCC-GC-GU 961 G-G-AG-G-A C-GAA--G-- -C(--UU-CG --)GG-GUGU AAA--CUCC| UUUU-AG-UG 1021 --GG-GAC-- GA-------- ---------( -----ACGCA ---------) ---------- 1081 ---------- ---------- --GA-CGGU- A-CCC-A-CA G-AA--AAAG ---------C 1141 -CCCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGGG-C-- 1201 GAG-CGUUGC CC-GAAUUUA -CU-GGGC|G UAAA-GCGC- ACG-UAG-GC -G|-GC-UU- 1261 C-GU-AAG|U CUG---GUGU G-AAA-UC-U CA-CGG-C(- UC-A)A-CCG -GG-A-GGC- 1321 -UGCA-CCAG A-UAC-UGCG G-ASSUC-GA GGA-----CN G-GA-GAGGA GAU-C|GGAA 1381 UU-CCCGGU- GUA-GCG(-G UGAAA)-UGC -AU-UGAU-A UC-GGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -AUCUCUG-- ---------- ---------- ---------G 1501 CCC--GU-UG CUGACG-CUG AG-G------ -------UG- C-GAAA-GC- UG-GGG-GA- 1561 GC-GNA-AG- -GG(AUUA-G AUAC)-CCC- ----UGUA-G UC----CCA- G-CC-CU--A 1621 AAC-G-AUGG G--CG-CU-- -------A|G -GU-GU-UGG -GG-G----- ---------- 1681 -(AUU-AA)- ---------- ---------- ---------- --------CC -CUCGG-CGC 1741 CG--CA---- --SS-(UAA- ---C)G-CA- UUAA-GCGCC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G UU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CCGUGG-AGC A-U-GU-GGA -UUAAUU-CG -(AUACAA-A C)--CGAAGA 1921 A-CCUUA-CC UGG-GC-UUG ACA-UC|--- -------U-A ---CGAG--- CAA----CGC 1981 -UCU-G--(- CAAA-)-CAG -G-GCGCC-- UC-------G GUGGG----- --(GU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------A A-)------- CUCACC---- ----GA---| CUC-GU-GGA |---C|A--C 2161 CG-GU-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GC-C(-GUG A)-GGUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UC--CUC- 2281 UG--UUGC-C AG-CGG---- ---------- ---------- ---G(---UU ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CCG|G 2701 G-CA-CU-C- U-GAG-GA-G A-CU-G-CCG --UG(-GU-C AA)-CAC-G- -GAGG-A-AG 2761 G-UG-GGG-A CN-ACG--UC -A-AGUC-AG CAU-G-GC-G GUUAC-G-UC -CA--GGGC- 2821 G-UCA-CA-C AUG--CUACA AUGGG-U-GG -UA--CAAAG GGC-A-G-C- CA-ACG-C(G 2881 -CGA)GCGG- ---------- GA-GCGAA-U CCCAA-AAAA -CC-A-CCC- UCAGUUGGGA 2941 U-CGCAGUC- (UGCAAC-U- C)-GACUGCG -UGAACG-CG -GAAU-CGC- -UAGUA-ACG 3001 GC-GGG-(UC -AGCCAU)-A CCG-CCGUG- AAUAC-G... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS env.OS_I25 4376 bp RNA RNA 02-JUL-1998 DEFINITION clone I25. ACCESSION No information KEYWORDS No information. SOURCE clone I25. ORGANISM clone I25. REFERENCE 1 AUTHORS Ward,D.M., Weller,R. and Bateson,M.M. TITLE 16S rRNA sequences reveal uncultured inhabitants of a well-studied thermal community JOURNAL FEMS Microbiol. Rev. 75, 105-116 (1990) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X67087 (bases 1 to 252) NB: ~10 nucs downstream of 478r removed BASE COUNT 199 a 180 c 263 g 156 t 3578 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... ...A-C-UCU -(ACAG)--G GAG-GC-NG- C-A---GU-C 901 GGG-AAUUUU G-GGCAAU-- GG-GC-(GCA A)-GCC-UGA CCCA|-GHGA UGCC-GC-GU 961 G-RAGG-R-A U-CUGG-A-A GN(--UU-CG --)GN-GUGY AAA-CUCAC| UUUU-AG-UG 1021 --GG-GAC-- GA-A-MC-GC ---------( ------AARA ---------) ---C-SS-GU 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|G UAAA-GCGC- ACG-UAG-GC -K|-KC-UUU 1261 C-GU-AAG|U CUG---GUGU G-AAA-UC-U CA-CGG-C(- UC-A)A-CCG -AG-A-GGC- 1321 -UGCA-CCAG A-UAC-UGCG A-AGCUY-GA GNA-----CG G-GA-GAGGA GAU-C|GGAA 1381 UU-CCCGGU- GUA-GCG(-G UGAAA)-UGC -AU-UGAU-A UC-GGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -AUCUCUG-- ---------- ---------- ---------G 1501 CCC--GU-N- -U-ACG-CUG AG-G------ -------UN- N-NAAA-GC- UG-GGG-GA- 1561 GC-GNA--A- -GG(AUUA-G AUAC)-CCC- ----UGUA-G UC----CCA- G-CC-CU--A 1621 AAC-G-AUGG G--CG-CU-- -------A|G -GU-GU-UGG -GG-NN---- ---------- 1681 -(-UU-AA)- ---------- ---------- ---------- --------CC -CUCA..... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .....U-GGA -UUAAUU-NG -(AUACAA-A C)--CGAAGA 1921 A-CCUUA-CC UGG-GC-UUG ACA-UC|--- -------C-A ---CGAG--- AAA----CGY 1981 -YUU-A--(- GAAA-)-UAG -G-GCGCC-- UC-------G GUGGG----- --(GA----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------A A-)------- CUCACC---- ----GA---| CCC-GU-GGA |---C|A--C 2161 CG-GU-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GC-C(-GUG A)-G-UGU-U 2221 GG-G-(UUAA -GU)-CC-GC AA-------- CGAG-C--GC A-CCC-UU-G |-UC...... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|G 2701 G-CA-CU-C- U-GAG-GA-G A-CU-G-CUG --UG(-GU-C AA)-CAC-UG -GAGG-A-AG 2761 G-UG-GGG-A MG-ACG--UC -A-AGUC-AG CAU-G-GM-G GUUAC-G-UC -CA--GGGC- 2821 GGUCA-CA-C AUG--CUACA AUGGG-U-GG -UA--CAAAG GGC-A-G-C- CA-AAG-C(G 2881 -CGA)GCGG- ---------- GA-GCGAA-U CCCAA-AAAA -CY-A-CCC- UCAGUUGGGA 2941 U-UGCAGUC- (UGCAAC-U- C)-GACUCGG -UGAAGU-NG -GAAU-AGC- -UAGUA-AUG 3001 GN-GGG-(UY -AGN-AU)-A NCG-NCGUG- AAUAN-GUU- NNN-NGG-CC UUG....... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS str.1093 4376 bp RNA RNA 02-JUL-1998 DEFINITION str. SBR1093. str. SBR1093. ACCESSION No information KEYWORDS No information. SOURCE str. SBR1093. str. SBR1093. ORGANISM str. SBR1093. REFERENCE 1 AUTHORS Bond,P.L., Hugenholtz,P., Keller,J. and Blackall,L.L. TITLE Bacterial community structures of phosphate-removing and non-phosphate-removing activated sludges from sequencing batch reactors JOURNAL Appl. Environ. Microbiol. 61 (5), 1910-1916 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X84521|g871642 isolate_name= SBR1093 BASE COUNT 101 a 100 c 136 g 68 t 3971 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... UGGC-GGU-A -UGN-GU--A ACAC-AUGCA A-GUC-GAGC 121 G--CG----- -----AAA-- ---------- ---------- ---------- ---------- 181 ---------- ---------- ----GUG-GC (--UU----- ---------- ---------- 241 --------CG -)GC-CAC-- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --AAGU---- ---|-AG--- AGCG-GCGG- 361 -A-CG-GG-U GCGU---AAC -AC-GUGGA- UAA--UCU-G C-CUUU---A -GGAC-U-GG 421 -GAU-AA-CU C--------- ------UG-- G(-GAAA-)C -UAGG-G--C UAAUACC-GG 481 AU-AAG---- ---------- -------A-C CA-C--A-GG ---UUC-(-- --------CA 541 UG-------- -)-GAA---C C-AGG----G GU--AAAA-- ---GGCGGCU ---------- 601 --(------- ---UUCG--- ---)------ ---------| GGCUGU--C- A--CCA---- 661 ----AAAG-- AUG---A-|G UCCGC----- -GU|----CC C--AUCA-G- GUA-G---UU 721 GG-UG-AG-( GU-AAC-GG) -C-UCACC-A A|-GCC-GA- AGA------- -----CG-GG 781 U-AG-C-CG| -A-CCU--(U -AGC)-GGGU ----GA-U-- CGG-C|C-AC -ACGGG-G-A 841 (CUGA-GA-C ACG)--GCCC -CGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUCUU G-GGCAAU-- GG-GC-(GCA A)-GCC-UGA CCCA|-GCAA UACC-GC-GU 961 G-A-GG-G-A U-GAA--G-G CC(--UU-CG --)GG-UCGU AAA--CCUC| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS env.spUN55 4376 bp RNA RNA 02-JUL-1998 DEFINITION clone UN55.. ACCESSION No information KEYWORDS No information. SOURCE clone UN55. ORGANISM clone UN55. REFERENCE 1 AUTHORS Ohkuma,M. and Kudo,T. TITLE Phylogenetic diversity of the intestinal bacterial community in the termite Reticulitermes speratus JOURNAL Appl. Environ. Microbiol. 62, 461-468 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: D63623 BASE COUNT 75 a 58 c 107 g 66 t 4070 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) U-A-C-GUAG |-GGGG-C-- 1201 UAG-CGUUGU CC-GGAAUUA -CU-GGGC|G UAAA-GGGC- ACG-CAG-GC -G|-GG-UU- 1261 U-GU-AAG|U CAG---CUGU A-AAA-GG-C GG-GGG-C(- UC-A)A-CCC -CU-G-UAU- 1321 -GUCG-GCUG A-UAC-UGCG A-GCCUA-GA GUA-----UG U-GA-GAGGG AAG-U|GGAA 1381 UU-CCCGGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UC-GGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CUUCCUG-- ---------- ---------- ---------G 1501 CAC--AU-AA CUGACG-CUC AU-N------ -------UG- C-GAAA-N-- UA-GGG-UA- 1561 GC-GAA-CG- -GA(AUUA-G AUAC)-UCC- ----GGUA-G UC----CUA- G-CU-GU--A 1621 AAC-G-AUGG A--UA-CU-- -------A|G -GU-GU-GGG -UG-UC---- ---------- 1681 -(-GA-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Sng.jonesi 4376 bp RNA RNA 02-JUL-1998 DEFINITION Synergistes jonesii str. 78-1 ATCC 49833 (T). ACCESSION No information KEYWORDS No information. SOURCE Synergistes jonesii str. 78-1 ATCC 49833 (T). ORGANISM Synergistes jonesii. REFERENCE 1 AUTHORS Allison,M.J., Mayberry,W.R., McSweeney,C.S. and Stahl,D.A. TITLE Synergistes jonesii, gen. nov., sp. nov.: A rumen bacterium that degrades toxic pyridinediols JOURNAL Syst. Appl. Microbiol. 15, 522-529 (1992) STANDARD No information COMMENTS Organism information Culture collection: ATCC 49833 (T) Sequence information (bases 1 to 4376) Corresponding GenBank entry: L08066 isolate_name= 78-1 BASE COUNT 343 a 311 c 436 g 245 t 3041 others ORIGIN 1 .......... .......... .......... .....AACGG AGAGUU(U-N A)U-CCU|-G 61 GCUCAG-GAC -GAAC-GC-- UGGC-GGC-G -CGC-CU--A ACNC-AUGCN A-GUC-GAAC 121 G--GG----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ------GAUC AUGUAGA-AG (--CU----- ---------- ---------- 241 --------UG -)CU-UAGAC AUNAUU---- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UU--- AGUG-GCGG- 361 -A-CG-GG-U GAGU---AAC -GC-GUGAG- G-A--CUU-G U-CAGU---U -ACSG-G-GG 421 -GAC-AA-CG G--------- ------AU-- G(-GAAA-)C -GUCA-G--C UAAUACC-CC 481 AU-AAG---- ---------- ---------- ---------- ----CC-(-- --------GA 541 GA-------- -)-GG----- ---------- -U--AAAA-- ---GGA---- ---------- 601 --(------- ---GCGA--- ---)------ ---------| ----UC--C- G--GUA---- 661 ----ACNG-- AGA---G-|A CUCGC----- -GU|----UC C--AUCN-G- CUA-G---UU 721 GG-AG-GG-( GU-AAA-GG) -C-CCUCC-A A|-GGC-GA- AGA------- -----CG-GA 781 U-AG-C-CG| -G-ACU--(G -AGA)-GGUU ----GA-C-- CGG-C|C-AC -NUUGG-A-A 841 (CUGA-GA-G ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- Y-N---GU-G 901 GGG-AAUAUU G-GGCAAU-- GG-GG-(GAA A)-CCC-UGA CCCA|-GCGA CGCC-GC-GU 961 G-G-GU-G-A A-GAA--A-U CC(--UU-CG --)GG-AUGU AAA--GCCC| UGUU-UU-GC 1021 --GG-GAA-- GA-A------ ---------( -----GCGAG ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CCG-C-NA G-AG--AAAG ---------C 1141 -CACGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GUGG-C-- 1201 NAG-CGUUGU CC-GGAAUUA -CU-GGGC|G UGAA-GCGC- ACG-CAG-GC -U|-GA-UA- 1261 A-UC-AAG|U CGG---CUGU A-AAA-GG-C AG-AGG-C(- UN-A)A-CCU -UU-G-CAU- 1321 -CACA-GUUG A-AAC-UGAU A-AUCUA-GA GUA-----UG U-GA-GAGGG AAG-C|GGAA 1381 UU-CCCGGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UC-GGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -CUUCCUG-- ---------- ---------- ---------G 1501 CAC--AA-GA CUGACG-CUC AU-G------ -------UG- C-GAAA-GC- CA-GGG-CA- 1561 GC-GAA-CG- -GG(AUUA-G AUAC)-CCC- ----GGUA-G UC----CUG- G-CC-GU--A 1621 AAC-G-AUGG A--CA-CU-- -------G|G -GU-GU-GGG -GU-AA---- ---------- 1681 -(-GC-AG)- ---------- ---------- ---------- -------UUA -CUCCG-UGC 1741 CG--CA---- --GC-(UAA- ---C)G-CG- AUAA-GUGUC C|C|G-CCU- G-GGGACUAC 1801 GGU-C---(G CAA)---G-A CU-GAAACUC -MAA-GGAAU UG-ACGGG-G -G-N-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-C-GU-GGU -UUAAUU-CG -(AUGCAA-A C)--CGAAGA 1921 A-CCUUA-CC UGG-GU-UUG ACM-UA|--- ---------C ---UACU--- -GU----UAC 1981 -UUG-A--(- GAGA-)-GAU -C-GAGAGG- AC-------- CUUAG----- --(CU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------U G-)------- CUAAG----- ----GA---| GGU-AG--AA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UCAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-CU-A |-UA--GCC- 2281 AG--UUGC-U AA-CGA---- ---------- ---------- ---G(---UC ---GAG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----UCG|A 2701 G-CA-CU-C- C-GGC-GA-G A-CU-G-C-G --CC(-GA-C AA)-GGC-G- -GAGG-A-AG 2761 G-UG-GGG-A CG-ACG--UC -A-AGUC-AU NAU-G-GC-C UAUAU-G-CC -CA--GGGC- 2821 G-ACA-CA-C GUG--CUACA AUGGC-C-GG -CA--CAAAA GGC-A-G-C- UU-GCC-A(G 2881 -CGA)UGGU- ---------- UG-GCGGA-U CCAGA-AAAG -CC-G-GUC- CCAGUUCGGA 2941 U-UGCAGAC- (UGCAAC-U- N)-GUCUGCA -UGAAGC-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCCAA)-G CUN-CGGUN- AAUAC-GUU- CC........ .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS 2.5.2-LEPT 4376 bp RNA RNA 09-JAN-1999 DEFINITION 2.5.2 LEPTOSPIRILLUM-NITROSPIRA_SUBDIVISION. ACCESSION No information KEYWORDS No information. SOURCE 2.5.2 LEPTOSPIRILLUM-NITROSPIRA_SUBDIVISION. ORGANISM 2.5.2 LEPTOSPIRILLUM-NITROSPIRA_SUBDIVISION. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 0 a 0 c 0 g 0 t 4376 others ORIGIN 1 x~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~-- ------~~~~ 541 ~~~~~~---- -~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~---~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- 1681 -(~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- -------~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~----~~~ 1981 ~~~~-~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~--- --~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~------ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~---~~ ---~~~--~~ 2341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- 3181 ---------- ---------- ---------- ------~)~~ ~~~~~~~~~~ ~~~~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS 2.5.2.1-LE 4376 bp RNA RNA 09-JAN-1999 DEFINITION 2.5.2.1 LEPTOSPIRILLUM_GROUP. ACCESSION No information KEYWORDS No information. SOURCE 2.5.2.1 LEPTOSPIRILLUM_GROUP. ORGANISM 2.5.2.1 LEPTOSPIRILLUM_GROUP. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 0 a 0 c 0 g 0 t 4376 others ORIGIN 1 x~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~-- ------~~~~ 541 ~~~~~~---- -~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~---~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- 1681 -(~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- -------~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~----~~~ 1981 ~~~~-~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~--- --~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~------ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~---~~ ---~~~--~~ 2341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- 3181 ---------- ---------- ---------- ------~)~~ ~~~~~~~~~~ ~~~~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS 2.5.2.1.1 4376 bp RNA RNA 09-JAN-1999 DEFINITION 2.5.2.1.1 LPP.FERROOXIDANS_SUBGROUP. ACCESSION No information KEYWORDS No information. SOURCE 2.5.2.1.1 LPP.FERROOXIDANS_SUBGROUP. ORGANISM 2.5.2.1.1 LPP.FERROOXIDANS_SUBGROUP. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 0 a 0 c 0 g 0 t 4376 others ORIGIN 1 x~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~-- ------~~~~ 541 ~~~~~~---- -~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~---~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- 1681 -(~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- -------~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~----~~~ 1981 ~~~~-~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~--- --~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~------ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~---~~ ---~~~--~~ 2341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- 3181 ---------- ---------- ---------- ------~)~~ ~~~~~~~~~~ ~~~~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS env.cOS17 4376 bp RNA RNA 02-JUL-1998 DEFINITION clone cOS17.. ACCESSION No information KEYWORDS No information. SOURCE clone cOS17. ORGANISM clone cOS17. REFERENCE 1 AUTHORS Goebel,B.M. and Stackebrandt,E. TITLE Molecular analysis of a natural acidic environment reveals a cultural bacterial diversity JOURNAL Unpublished (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X86772|g870917 BASE COUNT 365 a 360 c 487 g 254 t 2910 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... ...AC-GC-- UGGC-GGC-G -UGC-CU--A ACAC-AUGCA A-GUC-CGAC 121 G--UG----- -----AAA-- ---------- ---------- ---------- ---------- 181 ---------- ---------- ----GGG-GA (--GC----- ---------- ---------- 241 --------AA -)UC-CCCC- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ----GG---- ---|-UA--G GGUG-GCAA- 361 -A-CG-GG-U GAGU---AAG -AC-AUGGG- UGA--UCU-G C-CCUG---G -AGAU-G-GG 421 -GAU-AU-CC C--------- ------UC-- C(-GAAA-)G -GGGG-G--G CAAUACC-GA 481 AU-AGU---- ---------- -------A-U CC----G-GU ---UCC-(-- -------GUG 541 AA-G------ -)-GGG---A CC--G----G G---GAAAG- ---GGAGGC- CUC-UG---- 601 --(------- ---GUA---- ---)------ -----CA-A| -GCUUC--C- G--CUC---- 661 ----CUGG-- AUG---A-|G CCCAU----- -GG|----CC C--AUCA-G- CUA-G---UU 721 GG-UA-GG-( GU-AAA-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----CG-GG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAC ----AA-C-- CAG-C|C-AC -ACUGG-C-A 841 (CUGA-GA-C ACG)--GGCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 AGG-AAUAUU G-CNCAAU-- GG-GG-(GCA A)-CCC-UGA CGCA|-GCAA CACC-GC-GU 961 G-U-GG-G-A A-GAA--G-G CU(--UU-CG --)GG-UUGU AAA--CCAC| UUUU-GC-CC 1021 --GG-GAC-- GA-A-AA-GG --GAU-GUC( A----GAACA -----C---) GGCA-UU-UC 1081 ---------- -------G-A U-GA-CGGU- A-CCG-G-GA G-AA--UAAG ---------C 1141 -CACGGCU-A ACUCU-GUG( CCA--GCAGC CGCGGUA-A) G-A-C-AGAG |-GUGG-C-- 1201 AAG-CGUUGU UC-GGAAUUA -CU-GGGC|G UAAA-GAGU- CUG-UAG-GU -G|-GU-UU- 1261 G-UC-AAG|U CUU---UGGU G-AAA-GN-C CG-UGG-C(- UU-A)A-CCA -UG-G-GAA- 1321 -UNCC-AAAG A-GAC-UGGC A-GACUN-GA GGC-----UG G-GA-GAGNG AAG-C|GGAA 1381 UU-UCUGGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UC-AGAAGG- AAAG-CCGG- 1441 -U-G-UC(-G AA-G)NCGG- -CUUCCUG-- ---------- ---------- ---------G 1501 AAC--AG-NC CUGACA-CUG AG-A------ -------GA- C-GAAA-GC- GU-GGG-GA- 1561 GC-ACA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-CU--A 1621 AAC-G-AUGG G--UA-CU-- -------A|A -GU-GU-GGG -AG-GG---- ---------- 1681 -(-UU-AA)- ---------- ---------- ---------- -------ACC -UCCCG-UGC 1741 CG--CA---- --GC-(CAA- ---C)G-CA- GUAA-GUACC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G UU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-UGC A-U-GU-GGU -UUAAUU-CG -(ACGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-GC-UUG ACA-UG|C-- ---------C ---GCGA--- GUA----GGA 1981 -AAC-U--(- GAAA-)-GGG -G-ACCGA-- CC-------- ---GG----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------CA G-)------- UCC------- ----GG---| AAG-CG-GAA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GC-C(-GUG A)-GGUGU-U 2221 GG-G-(UUCA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-G |-CC--CUC- 2281 UG--UUGC-C AU-CGG---- ---------- ---------- ---G(---UC ---AAG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CCG|G 2701 G-CA-CU-C- U-GAG-GG-G A-CU-G-CCA --GC(-GA-C AA)-GUU-G- -GAGG-A-AG 2761 G-AG-AGG-A UG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAU-G-CC -CA--GGGC- 2821 C-ACA-CA-C GUG--CAACA AUGGC-C-GG -UA--CAGAC GGA-A-G-C- GA-GAC-C(G 2881 -AGA)GGUG- ---------- GA-GCAAA-U CCGAG-AAAG -CC-G-GUC- CCAGUUCGGA 2941 U-UGAGGUC- (UGCAAC-U- C)-GACCUCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GUA-(UC -AGC-AC)-G ACG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-CGAA A--GU-CUG- UU-GU-NCCU -GAA-G-UCG 3121 G-UGC-C-CC -AA-CCG--- ---------- ---------- -----(---- -GAAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- CGGAGG-G-A G-CC-GN-CC A-AGGU-AUG GCC-GG---- UAA-UUGG-G 3301 G......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Lpp.sp 4376 bp RNA RNA 02-JUL-1998 DEFINITION Leptospirillum sp.. ACCESSION No information KEYWORDS No information. SOURCE Leptospirillum sp. ORGANISM Leptospirillum sp. REFERENCE 1 AUTHORS Lane,D.J., Harrison,A.P., Stahl,D.A., Pace,B., Giovannoni,S.J., Olsen,G.J. and Pace,N.R. TITLE Evolutionary relationships among sulfur- and iron-oxidizing eubacteria JOURNAL J. Bacteriol. 174, 269-278 (1992) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: M79383 BASE COUNT 369 a 359 c 493 g 251 t 2904 others ORIGIN 1 .......... .......... .......... ..AAAUCUGG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-AAC -GAAC-GC-- UGGC-GGC-G -UGC-CU--A ACAC-AUGCA A-GUG-CGAC 121 G--UG----- -----AAA-- ---------- ---------- ---------- ---------- 181 ---------- ---------- ----GGG-GA (--GC----- ---------- ---------- 241 --------AA -)UC-CCCC- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ----GG---- ---|-UA--G GGUG-GCAA- 361 -A-CG-GG-U GAGU---AAG -AC-AUGGG- UGA--UCU-G C-CCUG---G -AGAU-G-GG 421 -GAU-AU-CC C--------- ------UC-- C(-GAAA-)G -GGGG-G--G CAAUACC-GA 481 AU-AGU---- ---------- -------A-U CC----G-GU ---UCC-(-- -------GUG 541 AA-G------ -)-GGG---A CC--G----G G---GAAAG- ---GGAGGC- CUC-UG---- 601 --(------- ---GUA---- ---)------ -----CA-A| -GCUUC--C- G--CUC---- 661 ----CUGG-- AUG---A-|G CCCAU----- -GG|----CC C--AUCA-G- CUA-G---UU 721 GG-UA-GG-( GU-AAA-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----CG-GG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAC ----AA-C-- CAG-C|C-AC -ACUGG-C-A 841 (CUGA-GA-C ACG)--GGCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 AGG-AAUAUU G-CGCAAU-- GG-GG-(GCA A)-CCC-UGA CGCA|-GCAA CGCC-GC-GU 961 G-U-GG-G-A A-GAA--G-G CU(--UU-CG --)GG-UUGU AAA--CCAC| UUUU-GC-CC 1021 --GG-GAC-- GA-A-AA-GG --GAU-GUC( A----GAACA -----C---) GGCA-UU-UC 1081 ---------- -------G-A U-GA-CGGU- A-CCG-G-GA G-AA--UAAG ---------C 1141 -CACGGCU-A ACUCU-GUG( CCA--GCAGC CGCGGUA-A) G-A-C-AGAG |-GUGG-C-- 1201 AAG-CGUUGU UC-GGAAUUA -CU-GGGC|G UAAA-GAGU- CUG-UAG-GU -G|-GU-UU- 1261 G-UC-AAG|U CUU---UGGU G-AAA-GG-C CG-UGG-C(- UU-A)A-CCA -UG-G-GAA- 1321 -UGCC-AAAG A-GAC-UGGC A-GACUA-GA GGC-----UG G-GA-GAGGG AAG-C|GGAA 1381 UU-UCUGGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UC-AGAAGG- AAGG-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -CUUCCUG-- ---------- ---------- ---------G 1501 AAC--AG-AC CUGACA-CUG AG-A------ -------GA- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-CU--A 1621 AAC-G-AUGG G--UA-CU-- -------A|A -GU-GU-GGG -AG-GG---- ---------- 1681 -(-UU-AA)- ---------- ---------- ---------- -------ACC -UCCCG-UGC 1741 CG--CA---- --GC-(CAA- ---C)G-CA- GUAA-GUACC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G UU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-NN--S 1861 C-A--CA-AG CGGUGG.... .......... .......... .(.......C G)--CGAAGA 1921 A-CCUUA-CC UGG-GC-UUG ACA-UG|C-- ---------C ---GCGA--- GUA----GGA 1981 -AAC-U--(- GAAA-)-GGG -G-ACCGA-- CC-------- ---GG----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------CA G-)------- UCC------- ----GG---| AAG-CG-GAA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GC-C(-GUG A)-GGUGU-U 2221 GG-G-(UUCA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-G |-CC--CUC- 2281 UG--UUGC-C AU-CGG---- ---------- ---------- ---G(---UC ---AAG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CCG|G 2701 G-CA-CU-C- U-GAG-GG-G A-CU-G-CCA --GC(-GA-C AA)-GUU-G- -GAGG-A-AG 2761 G-AG-AGG-A UG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAU-G-CC -CA--GGGC- 2821 C-ACA-CA-C GUG--CAACA AUGGC-C-GG -UA--CAGAC GGA-A-G-C- GA-GAC-C(G 2881 -AGA)GGUG- ---------- GA-GCAAA-U CCGAG-AAAG -CC-G-GUC- CCAGUUCGGA 2941 U-UGAGGUC- (UGCAAC-U- C)-GACCUCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GUA-(UC -AGC-AC)-G ACG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-CGAA A--GU-CUG- UU-GU-ACCU -GAA-G-UCG 3121 G-UUC-C-CC -AA-CCG--- ---------- ---------- -----(---- -GAAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- CGGAGG-G-A G-CC-GC-CC A-AGGU-AUG GCC-GG.... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Lpp.LfLa 4376 bp RNA RNA 02-JUL-1998 DEFINITION Leptospirillum sp. str. LfLa. ACCESSION No information KEYWORDS No information. SOURCE Leptospirillum sp. str. LfLa. ORGANISM Leptospirillum sp. REFERENCE 1 AUTHORS Lane,D.J., Harrison,A.P., Stahl,D.A., Pace,B., Giovannoni,S.J., Olsen,G.J. and Pace,N.R. TITLE Evolutionary relationships among sulfur- and iron-oxidizing eubacteria JOURNAL J. Bacteriol. 174, 269-278 (1992) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: M79386 (bases 1 to 321) isolate_name= LfLa BASE COUNT 209 a 200 c 274 g 155 t 3538 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......A-C ACG)--GGCN -DGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 AGG-AAUAUU G-CGCAAU-- GG-GG-(GCA A)-CCC-UGA CGCA|-GCAA CGCN-GN-GU 961 G-U-GG-G-A A-GAA--G-G CN(--UU-CG --)GG-UUGU AAA--CCNC| UUUU-GC-CC 1021 --GG-GAC-- GA-A-AA-GG --GGC-GUC( A----GAAUA -----C---) GGCG-CU-UC 1081 ---------- -------G-A U-GA-CGGU- A-CCG-G-GA G-AA--UAAG ---------C 1141 -CACGGCN-N ACUCU-G..( .......... .........) ..A-C-AGAG |--U-G-C-- 1201 UAG-CGUUGU UC-G-AGUUA -CU-GG-C|G UUAA-GAGU- CUG-UAG-GU -G|-GU-UU- 1261 G-UC-AAG|U CUU---UGGU G-AAA-GG-C CG-U-G-C(- UU-A)A-CCA -UG-G-KAA- 1321 -UGCC-AAAG A-GAC-UGGC N-GACUN-GA GGC-----UG G-GA-GAGGG AAG-C|GGAA 1381 UU-UCUGGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UC-AGAAGG- AAGG-CCKG- 1441 -U-G-GC(-G AA-G)GCGG- -CUUCCUK-- ---------- ---------- ---------G 1501 AAC--AG-GC CUKACA-CUG AG-A------ -------GA- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----NGUA-G UC----CAC- G-CC-CU--A 1621 AAC-G-AUGG G--UA-CU-- -------A|A -GU-GU-GGG -AG-GG---- ---------- 1681 -(-UD-AA)- ---------- ---------- ---------- -------ACC -UCCND-UGC 1741 CG--CA---- --GC-(DAA- ---C)G-CA- GUAA-GUACC N|N|G-CCU- A-GGGAGUAC 1801 GGC-C---(G CAA)---G-G U......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .CG-UCA|-- C-U---CG-U |GC-C(-GUG A)-GGUGU-U 2221 -G-G-(UUCA -GU)-CCCKC AA-------- CGAG-C--GC AACCC-UC-G |-CC--CUC- 2281 UG--UUGC-C DC-CGG---- ---------- ---------- ---G(---UC ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CCG|G 2701 N-CD-CU-C- U-GAG-GG-N A-CU-G-CCA --GC(-KA-C AA)-GUU-G- -GAGG-A-AG 2761 G-AG-AGG-A UG-ACG--UC -A-AGUC-AU YAU-G-GC-C CUUAU-G-CC -UA--GGGC- 2821 U-ACA-CA-C GUG--CAACA AUGGC-C-GG -UA--CAGAC GGA-C-G-C- GA-GAC-C(G 2881 -AGA)GGUD- ---------- GA-GCAAA-U CCGAG-AAAG -CC-D-NWN- CCAGUUCGGA 2941 U-UGAGGUC- (UGCAAC-U- N)-GACCUNA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GUA-(UC -AGC-AC)-G ACG-CGGUN- AAUAC-GUU- CCC....... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Lpp.ferro2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Leptospirillum ferrooxidans.. ACCESSION No information KEYWORDS No information. SOURCE Leptospirillum ferrooxidans. ORGANISM Leptospirillum ferrooxidans. REFERENCE 1 AUTHORS Goebel,B.M. and Stackebrandt,E. TITLE The biotechnological importance of molecular diversity studies for metal bioleaching JOURNAL (in) Priest,F.G., Ramos-Cormenzana,A. and Tindall,B.J. (Eds. ); BACTERIAL DIVERSITY AND SYSTEMATICS (FEBS SYMPOSIUM NO. 75): 259-273; Plenum Press, New York (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X72852|g899312 BASE COUNT 370 a 360 c 496 g 251 t 2899 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... ......U--A ACAC-AUGCA A-GUC-CGAC 121 G--NG----- -----AAA-- ---------- ---------- ---------- ---------- 181 ---------- ---------- ----GGG-GA (--GC----- ---------- ---------- 241 --------AA -)UC-CCCC- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ----GG---- ---|-UA--G GGUG-GCAA- 361 -A-CG-GG-U GAGU---AAG -AC-AUGGG- UGA--UCU-G C-CCUG---G -AGAU-G-GG 421 -GAU-AU-CC C--------- ------UC-- C(-GAAA-)G -GGGG-G--G CAAUACC-GA 481 AU-AGU---- ---------- -------A-U CC----G-GU ---UCC-(-- -------GUG 541 AA-G------ -)-GGG---G CC--G----G G---GAAAG- ---GGAGGC- CUC-UG---- 601 --(------- ---GUA---- ---)------ -----CA-A| -GCUUC--C- G--CUC---- 661 ----CUGG-- AUG---A-|G CCCAU----- -GG|----CC C--AUCA-G- CUA-G---UU 721 GG-UA-GG-( GU-AAA-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----CG-GG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAC ----AA-C-- CAG-C|C-AC -ACUGG-C-A 841 (CUGA-GA-C ACG)--GGCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 AGG-AAUAUU G-CGCAAU-- GG-GG-(GCA A)-CCC-UGA CGCA|-GCAA CGCC-GC-GU 961 G-U-GG-G-A A-GAA--G-G CU(--UU-CG --)GG-UUGU AAA--CCAC| UUUU-GC-CC 1021 --GG-GAC-- GA-A-AG-GG --GGG-GCC( U----GAAUA -----A---) GGUC-AC-CC 1081 ---------- -------G-A U-GA-CGGU- A-CCG-G-GA G-AA--UAAG ---------C 1141 -CACGGCU-A ACUCU-GUG( CCA--GCAGC CGCGGUA-A) G-A-C-AGAG |-GUGG-C-- 1201 AAG-CGUUGU UC-GGAAUUA -CU-GGGC|G UAAA-GAGU- CUG-UAG-GU -G|-GU-UU- 1261 G-UC-AAG|U CUU---UGGU G-AAA-GG-C CG-UGG-C(- UU-A)A-CCA -UG-G-GAA- 1321 -UGCC-AAAG A-GAC-UGGC A-GACUG-GA GGC-----UG G-GA-GAGGG AAG-C|GGAA 1381 UU-UCUGGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UC-AGAAGG- AAGG-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -CUUCCUG-- ---------- ---------- ---------G 1501 AAC--AG-AC CUGACA-CUG AG-A------ -------GA- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-CU--A 1621 AAC-G-AUGG G--UA-CU-- -------A|A -GU-GU-GGG -AG-GG---- ---------- 1681 -(-UU-AA)- ---------- ---------- ---------- -------ACC -UCCCG-UGC 1741 CG--CA---- --GC-(CAA- ---C)G-CA- GUAA-GUACC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G UU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-UGC A-U-GU-GGU -UUAAUU-CG -(ACGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-GC-UUG ACA-UG|C-- ---------C ---GCGA--- GUA----GGA 1981 -AAC-C--(- GAAA-)-GGG -G-ACCGA-- CC-------- ---GG----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------CA G-)------- UCC------- ----GG---| AAG-CG-GAA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GC-C(-GUG A)-GGUGU-U 2221 GG-G-(UUCA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-G |-CC--CUC- 2281 UG--UUGC-C AC-CGG---- ---------- ---------- ---G(---UC ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CCG|G 2701 G-CA-CU-C- U-GAG-GG-G A-CU-G-CCA --GC(-GA-C AA)-GUU-G- -GAGG-A-AG 2761 G-AG-AGG-A UG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAU-G-CC -CA--GGGC- 2821 C-ACA-CA-C GUG--CAACA AUGGC-C-GG -UA--CAGAC GGA-A-G-C- AA-GAC-C(G 2881 -AGA)GGUG- ---------- GA-GCAAA-U CCGAG-AAAG -CC-G-GUC- CCAGUUCGGA 2941 U-UGAGGUC- (UGCAAC-U- C)-GACCUCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GUA-(UC -AGC-AC)-G ACG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-CGAA A--GU-CUN- UU-GU-ACCU -GAA-G-UCG 3121 G-UGC-C-CC -AA-CCG--- ---------- ---------- -----(---- -GAAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- CGGAGG-G-A G-CC-GC-CC A-AGGU-AUG GCC-GG-AU- UAA-UUGG-G 3301 G---AAGUC- GUAA-CAAGG UAGC...... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS env.cOS4 4376 bp RNA RNA 02-JUL-1998 DEFINITION clone cOS4.. ACCESSION No information KEYWORDS No information. SOURCE clone cOS4. ORGANISM clone cOS4. REFERENCE 1 AUTHORS Goebel,B.M. and Stackebrandt,E. TITLE Molecular analysis of a natural acidic environment reveals a cultural bacterial diversity JOURNAL Unpublished (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X86770|g870915 BASE COUNT 353 a 359 c 487 g 247 t 2930 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... ...C-CU--A ACAC-AUGCA A-GUC-CGAC 121 G--UG----- -----AAA-- ---------- ---------- ---------- ---------- 181 ---------- ---------- ----GGG-GA (--GC----- ---------- ---------- 241 --------AA -)UC-CCCC- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ----GG---- ---|-UA--G GGUG-GCAA- 361 -A-CG-GG-U GAGU---AAG -AC-AUGGG- UGA--UCU-N C-CCUG---G -AGAU-G-GG 421 -GAU-AU-CC C--------- ------UC-- C(-GAAA-)G -GGGG-G--G CAAUACC-GA 481 AU-AGU---- ---------- -------A-U CC----G-GU ---UCC-(-- -------GUG 541 AA-G------ -)-GGG---G CC--G----G G---GAAAG- ---GGAGGC- CUC-UG---- 601 --(------- ---GUA---- ---)------ -----CA-A| -GCUUC--C- G--CUC---- 661 ----CUGG-- AUG---A-|G CCCAU----- -GG|----CC C--AUCA-G- CUA-G---UU 721 GG-UA-GG-( GU-AAA-GG) -C-CUACC-A A|-GNC-GA- CGA------- -----CG-GG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAC ----AA-C-- CAN-C|C-AC -ACUGG-C-N 841 (CUGA-GA-C ACG)--GGCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 AGG-AAUAUU G-CNCAAU-- GG-GG-(GCA A)-CCC-UGA CNCA|-NCAA CNCC-GC-GU 961 G-U-GG-G-A A-GAA--G-G CU(--UU-CG --)GG-UUGU AAA--CCAC| UUUU-NC-CC 1021 --GG-GAC-- GA-A-AG-GG --GGG-GCC( U----GAAUA -----A---) GGUC-AC-CC 1081 ---------- -------G-A U-GA-CGGU- A-CCG-G-GA G-AA--UAAG ---------C 1141 -CACGGCU-A ACUCU-GUG( CCA--GCAGC CGCGGUA-A) G-A-C-AGAG |-GUGG-C-- 1201 AAG-CGUUGU UC-GGAGUUA -CU-GGGC|G UAAA-GAGU- CUG-UAG-GU -G|-GU-CU- 1261 G-UC-AAG|U CUU---UGGU G-AAA-GG-C CG-UGG-C(- UU-A)A-CCA -UG-G-GAA- 1321 -UGCC-AAAG A-GAC-UGGC A-GACUG-GA GGC-----UG G-GA-GAGGG AAG-C|GGAA 1381 UU-UCUGGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UC-AGAAGG- AAGG-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -CUUCCUG-- ---------- ---------- ---------G 1501 AAC--AG-AC CUGACA-CUG AG-A------ -------GA- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-CU--A 1621 AAC-G-AUGG G--UA-CU-- -------A|A -GU-GU-GGG -AG-GG---- ---------- 1681 -(-UU-AA)- ---------- ---------- ---------- -------ACC -UCCCG-UGC 1741 CG--CA---- --GC-(CAA- ---C)G-CA- GUAA-GUACC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G UU-GANACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-UGC A-U-GU-GGU -UUANUU-CG -(ACGCAA-C G)--CGANGA 1921 A-CCUUA-CC UGG-GC-UUG ACA-UG|C-- ---------C ---GCGA--- GUA----GGG 1981 -AAC-C--(- GANN-)-GGG -G-ACCGA-- CC-------- ---GG----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------CA G-)------- UCC------- ----GG---| AAG-CG-GAA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GC-C(-GUG A)-GGUGU-U 2221 GG-G-(UUCA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-G |-CC--CUC- 2281 UG--UUGC-C AC-CGG---- ---------- ---------- ---G(---UC ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CCG|G 2701 G-CA-CU-C- U-GAG-GG-G N-CU-G-CCA --GC(-GA-C AA)-GUU-G- -GAGG-A-AG 2761 G-AG-AGG-A UG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAU-G-CC -CA--GGGC- 2821 C-ACA-CA-C GUG--CAACA AUGGC-C-GG -UA--CAGAC GGA-A-G-C- GA-GAC-C(G 2881 -AGA)GGUG- ---------- GA-GCAAA-U CCGAG-AAAG -CC-G-GUC- CCAGUUCGGA 2941 U-UGAGGUC- (UGCAAC-U- C)-GACCUCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GUA-(UC -AGC-AC)-G ACG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GAC-ACA--- --CCA-CGAA A--GU-CUG- UU-GU-ACCU -GAA-G-UCG 3121 G-UGC-C-CC -AN-NCG--- ---------- ---------- -----(---- -GAAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- CGGAGG-G-A G-CC-GC-CC A-AGGU-AUG GCC-GG-AU- UAA-UUGG-G 3301 G......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS env.cOS7 4376 bp RNA RNA 02-JUL-1998 DEFINITION clone cOS7.. ACCESSION No information KEYWORDS No information. SOURCE clone cOS7. ORGANISM clone cOS7. REFERENCE 1 AUTHORS Goebel,B.M. and Stackebrandt,E. TITLE Molecular analysis of a natural acidic environment reveals a cultural bacterial diversity JOURNAL Unpublished (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X86773|g870918 BASE COUNT 335 a 325 c 456 g 229 t 3031 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... .CAC-AUGCA A-GUC-CGAC 121 G--UG----- -----AAA-- ---------- ---------- ---------- ---------- 181 ---------- ---------- ----GGG-GA (--GC----- ---------- ---------- 241 --------AA -)UC-CCCC- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ----GG---- ---|-UA--G GGUG-GCAA- 361 -A-CG-GG-U GAGU---AAG -AC-AUGGG- UGA--UCU-G C-CCUG---G -AGAU-G-GG 421 -GAU-AU-CC C--------- ------UC-- C(-GAAA-)G -GGGG-G--G CAAUACC-GA 481 AU-AGU---- ---------- -------A-U CC----G-GU ---UCC-(-- -------GUG 541 AA-G------ -)-GGG---G CC--G----G G---GAAAG- ---GGAGGC- CUC-UG---- 601 --(------- ---GUA---- ---)------ -----CA-A| -GCUUC--C- G--CUC---- 661 ----CUGG-- AUG---A-|G CCCAU----- -GG|----CC C--AUCA-G- CUA-G---UU 721 GG-UA-GG-( GU-AAA-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----CG-GG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAC ----AA-C-- CAG-C|C-AC -ACUGG-C-A 841 (CUGA-GA-C ACG)--GGCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 AGG-AAUAUU G-CGCAAU-- GG-GG-(GCA A)-CCC-UGA CGCA|-GCAA CCCC-GC-GU 961 G-U-GG-G-A A-GAA--G-G CU(--UU-CG --)GG-UUGU AAA--CCAC| UUUU-GC-CC 1021 --GG-GAC-- GA-A-AG-GG --GGG-ACC( U----GAAUA -----A---) GGUU-GC-CC 1081 ---------- -------G-A U-GA-CGGU- A-CCG-G-GA G-AA--UAAG ---------C 1141 -CACGGCU-A ACUCU-GUG( CCA--GCAGC CGCGGUA-A) G-A-C-AGAG |-GUGG-C-- 1201 AAG-CGUUGU UC-GGAGUUA -CU-GGGC|G UAAA-GAGU- CUG-UAG-GU -G|-GU-CU- 1261 G-UC-AAG|U CUU---UGGU G-AAA-GN-C CG-UGG-C(- UU-A)A-CCA -UG-G-GAA- 1321 -UGCC-AAAG A-GAC-UGGC A-GACUG-GA GGC-----UG G-GA-GAGGG AAG-C|GGAA 1381 UU-UCUGGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UC-AGAAGG- AAGG-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -CUUCCUG-- ---------- ---------- ---------G 1501 AAC--AG-AC CUGACA-CUG AG-A------ -------GA- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-CU--A 1621 AAC-G-AUGG G--UA-CU-- -------A|A -GU-GU-GGG -AG-GG---- ---------- 1681 -(-UU-AA)- ---------- ---------- ---------- -------ACC -UCCCG-UGC 1741 CG--CA---- --GC-(CAA- ---C)G-CA- GUAA-GUACC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G UU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-UGC A-U-GU-GGU -UUAAUU-CG -(ACGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-GC-UUG ACA-UG|C-- ---------C ---GCGA--- GUA----GGA 1981 -AAC-C--(- GAAA-)-GGG -G-ACCGA-- CC-------- ---GG----- --(CU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------CA G-)------- UCC------- ----GG---| AAG-CG-GAA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UUG-UCA|-G C-U---CG-U |GC-C(-GUG A)-GGUGU-U 2221 GG-G-(UUCA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-G |-CC--CUC- 2281 UG--UUGC-C AC-CGG---- ---------- ---------- ---G(---UC ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CCG|G 2701 G-CA-CU-C- U-GAG-GG-G A-CU-G-CCA --GC(-GA-C AA)-GUU-G- -GAGG-A-AG 2761 G-AG-AGG-A UG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAU-G-CC -CA--GGGC- 2821 C-ACA-CA-C GUG--CAACA AUGNC-C-GG -UA--CAGAC GGA-A-G-C- AA-GAC-C(G 2881 -AGA)GGUG- ---------- GA-GCAAA-U CCGAG-AAAG -CC-G-GUC- CCAGUUCGGA 2941 U-UGAGGUC- (UGCAAC-U- C)-GACCNCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GUA-(UC -AGC-AC)-G ACG-CGGUG- AAUAC-GUU- CC........ .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Lpp.ferroo 4376 bp RNA RNA 02-JUL-1998 DEFINITION Leptospirillum ferrooxidans str. Z2 ATCC 29047. ACCESSION No information KEYWORDS No information. SOURCE Leptospirillum ferrooxidans str. Z2 ATCC 29047. ORGANISM Leptospirillum ferrooxidans. REFERENCE 1 AUTHORS Lane,D.J., Harrison,A.P., Stahl,D.A., Pace,B., Giovannoni,S .J., Olsen,G.J. and Pace,N.R. TITLE Evolutionary relationships among sulfur- and iron-oxidizing eubacteria JOURNAL J. Bacteriol. 174, 269-278 (1992) STANDARD No information COMMENTS Organism information Culture collection: ATCC 29047 Sequence information (bases 1 to 4376) Corresponding GenBank entry: M79443 (bases 1 to 316) ATCC 29047 = DSM 2705 isolate_name= Z2 NB: ATCC lists the strain for ATCC 29047 as l15 not Z2 BASE COUNT 217 a 219 c 301 g 175 t 3464 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ...UUU--C- G--CCU---- 661 ----UCCG-- AUG---A-|- CCCAU----- -GG|----CC C--AUCM-G- CUA-G---UU 721 GG-UA-GG-( GU-AAA-GG) -C-CUACN-N A|-GGC-UN- CGA------- -----CG-GG 781 U-CG-C-UG| -G-UCU--(G -AGA)-GGAC ----GA-C-- CAG-C|N-AC -ACUGG-C-A 841 (CUGA-GA-U ACG)--GGCN -AGA-C-UCC -(NNNG)--G GAG-GC-AG- C-A---GU-G 901 AGG-AAUAUU G-CGCAAU-- GG-GG-(GAA A)-CCC-UGA CGCA|-GCAA CGCC-GC-GU 961 G-U-GG-G-A A-GAA--G-G CC(--UU-CG --)GG-UCGU AAA--CCNC| UUUU-GC-AC 1021 --GG-GAC-- GA-A-AA-AG --GGA-UAU( C----GAACA -----A---) AUAU-CC-CN 1081 ---------- -------G-A U-GA-CGGU- A-CCG-U-GA G-AA--UAAG ---------C 1141 -CACGGCN-N ACUCU-G..( .......... .........) .......... |......... 1201 .......... .......... .CU-GGGC|G UAAA-GAGU- CUG-UAG-GU -G|-GU-UU- 1261 G-UC-AAG|U CUU---UGGU G-AAA-GG-C CG-UAG-C(- UU-A)A-CUA -UG-G-GAA- 1321 -UGCC-AAAG A-GAC-UGGC A-GGCUN-GA GGC-----UG G-GA-GAGGG NAG-C|GGNA 1381 UU-UCUGGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UC-AGAAGG- AASG-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -CUUCCUG-- ---------- ---------- ---------G 1501 AAC--AG-UC CUGACA-CUG AG-A------ -------GA- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(ACCA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-CU--A 1621 AAC-G-AUGG G--UA-CU-- -------A|A -GU-GA-UGG -AG-GG---- ---------- 1681 -(GUU-AA)- ---------- ---------- ---------- -------ACC -CUCCG-UGC 1741 CG--CA---- --GC-(MAA- ---C)G-CR- GUAA-GUACC C|N|G-CCU- G-GGGAGUAC 1801 GGC-C---(G ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. C-U---CG-U |GC-C(-GUG A)-GGUGU-U 2221 GG-G-(UUCN -GU)-CCCGC WU-------- CGAG-C--GC NACCC-UC-G |-CN--NUU- 2281 UG--UUGC-C AU-CGG---- ---------- ---------- ---G(---UA ---AAG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CCG|G 2701 G-AA-CU-C- U-AAG-GG-N A-CU-G-CCA --GC(-GA-C UA)-GUU-G- -GAGG-A-AG 2761 G-AG-AGG-A UG-ACG--UC -U-AGUC-AU CWU-G-GC-C UUUAU-G-CC -UA--GGGC- 2821 C-YCY-YY-C GUG--CYACY AUGGC-C-GG -UA--CUGAC GGA-G-G-C- AA-UGC-C(G 2881 -AGA)GGCG- ---------- GA-GCUUU-C CCGAG-AAAA -CC-G-GUC- CYYGUUCGGA 2941 U-UGAGGUC- (UGCYAC-U- C)-GACCUCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-AUA-(UC -WGA-AC)-G AUG-CGGUN- AAUAC-GUU- CC........ .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Lpp.ferro3 4376 bp RNA RNA 02-JUL-1998 DEFINITION Leptospirillum ferrooxidans.. ACCESSION No information KEYWORDS No information. SOURCE Leptospirillum ferrooxidans. ORGANISM Leptospirillum ferrooxidans. REFERENCE 1 AUTHORS Goebel,B.M. and Stackebrandt,E. TITLE Molecular analysis of a natural acidic environment reveals a cultural bacterial diversity JOURNAL Unpublished (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X86776|g871397 BASE COUNT 378 a 354 c 481 g 268 t 2895 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......AAC -GAAC-GC-- UGGC-GGC-G -UGC-CU--A ACAC-AUGCA A-GUC-CGAC 121 G--UG----- -----AAA-- ---------- ---------- ---------- ---------- 181 ---------- ---------- ----GGG-GA (--GC----- ---------- ---------- 241 --------AA -)UC-CCCC- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ----GG---- ---|-UA--G GGUG-GCAN- 361 -A-CG-GG-U GAGU---AAU -AC-AUGGG- UGA--UCU-A C-CUUA---G -GGAU-G-GG 421 -GAU-AU-CC U--------- ------UC-- C(-GAAA-)G -GAGG-G--G CAAUACC-GA 481 AU-AUU---- ---------- -------G-U CC----G-GA ---GCC-(-- -------GUG 541 AA-G------ -)-GGU---U CC--G----G G---GAAAG- ---GGAGGC- CUC-UG---- 601 --(------- ---AUA---- ---)------ -----CA-A| -GCUUU--C- G--CCU---- 661 ----UAAG-- AUG---A-|G CCCAU----- -GG|----CC C--AUCA-G- CUA-G---UU 721 GG-UA-GG-( GU-AAA-GG) -C-CUACC-A A|-GGC-UA- CGA------- -----CG-GG 781 U-CG-C-UG| -G-UCU--(G -AGA)-GGAC ----GA-C-- CAG-C|C-AC -ACUGG-C-A 841 (CUGA-GA-U ACG)--GGCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 AGG-AAUAUU G-CNCAAU-- GG-GG-(GAA A)-CCC-UGA CGCA|-GCAA CGCC-GC-GU 961 G-U-GG-G-A A-GAA--G-G CC(--UU-CG --)GG-UCGU AAA--CCAC| UUUU-GC-AC 1021 --GG-GAC-- GA-A-AA-AG --GGA-UAU( C----GAACA -----A---) AUAU-CC-CC 1081 ---------- -------G-A U-GA-CGGU- A-CCG-U-GA G-AA--UAAG ---------C 1141 -CACGGCU-A ACUCU-GUG( CCA--GCAGC CGCGGUA-A) G-A-C-AGAG |-GUGG-C-- 1201 AAG-CGUUGU UC-GGAAUUA -CU-GGGC|G UAAA-GAGU- CUG-UAG-GU -G|-GU-UU- 1261 G-UC-AAG|U CUU---UGGU G-AAA-GG-C CG-UAG-C(- UU-A)A-CUA -UG-G-GAA- 1321 -UGCC-AAAG A-GAC-UGGC A-GGCUG-GA GGC-----UG G-GA-GAGGG AAG-C|GGAA 1381 UU-UCUGGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UC-AGAAGG- AAGG-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -CUUCCUG-- ---------- ---------- ---------G 1501 AAC--AG-UC CUGACA-CUG AG-A------ -------GA- C-GAAA-GC- GU-GGG-GA- 1561 GC-ACA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-CU--A 1621 AAC-G-AUGG G--UA-CU-- -------A|N -GU-GU-GGA -GG-GG---- ---------- 1681 -(-UU-AA)- ---------- ---------- ---------- -------ACC -CUCCG-UGC 1741 CG--CA---- --GC-(AAA- ---C)G-CA- GUAA-GUACC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G UU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-UGC A-U-GU-GGU -UUAAUU-CG -(ACGCAA-C G)--CGAGGA 1921 A-CCUUA-CC UAG-GC-UUG ACA-UG|U-- ---------G ---GUGA--- GUA----GCG 1981 -AAC-C--(- GAAA-)-GGG -G-AGCGA-- CC-------- ---CG----- --(UC----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------AA A-)------- UCG------- ----GG---| CCA-UC-ACA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GC-C(-GUG A)-GGUGU-U 2221 GG-G-(UUCA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-G |-CC--CUU- 2281 UG--UUGC-C AU-CGG---- ---------- ---------- ---G(---UA ---AAG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CCG|G 2701 G-CA-CU-C- U-AAG-GG-G A-CU-G-CCA --GC(-GA-C AA)-GUU-G- -GAGG-A-AG 2761 G-AG-AGG-A UG-ACG--UC -A-AGUC-AU CAU-G-GC-C UUUAU-G-CC -UA--GGGC- 2821 C-ACA-CA-C GUG--CAACA AUGGC-C-GG -UA--CAGAC GGA-G-G-C- AA-UGC-C(G 2881 -AGA)GGCG- ---------- GA-GCAAA-C CCGAG-AAAA -CC-G-GUC- CCAGUUCGGA 2941 U-UGAGGUC- (UGCAAC-U- C)-GACCUCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-AUA-(UC -AGA-AC)-G AUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-CGAA A--GU-UUG- UU-GU-ACCC -GAA-G-UCG 3121 G-UGC-C-UU -AA-CCUC-- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------G AGGAGA-G-A G-CC-GC-CC A-AGGU-AUG GCC-GA-UG- --A-UUGG-C 3301 G---UG.... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS 2.5.2.1.2 4376 bp RNA RNA 09-JAN-1999 DEFINITION 2.5.2.1.2 ENV.C0S62_SUBGROUP. ACCESSION No information KEYWORDS No information. SOURCE 2.5.2.1.2 ENV.C0S62_SUBGROUP. ORGANISM 2.5.2.1.2 ENV.C0S62_SUBGROUP. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 0 a 0 c 0 g 0 t 4376 others ORIGIN 1 x~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~-- ------~~~~ 541 ~~~~~~---- -~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~---~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- 1681 -(~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- -------~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~----~~~ 1981 ~~~~-~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~--- --~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~------ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~---~~ ---~~~--~~ 2341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- 3181 ---------- ---------- ---------- ------~)~~ ~~~~~~~~~~ ~~~~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS env.cOS62 4376 bp RNA RNA 02-JUL-1998 DEFINITION clone cOS62.. ACCESSION No information KEYWORDS No information. SOURCE clone cOS62. ORGANISM clone cOS62. REFERENCE 1 AUTHORS Goebel,B.M. and Stackebrandt,E. TITLE Molecular analysis of a natural acidic environment reveals a cultural bacterial diversity JOURNAL Unpublished (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X86774|g870919 BASE COUNT 358 a 347 c 475 g 271 t 2925 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... .CAC-AUGCA A-GUC-CGAC 121 G--UG----- -----AAA-- ---------- ---------- ---------- ---------- 181 ---------- ---------- ----GGG-GA (--GC----- ---------- ---------- 241 --------AA -)UC-CCCC- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ----GG---- ---|-UA--G GGUG-GCGA- 361 -A-CG-GG-U GAGU---AAG -AC-AUGGG- UAA--UCU-G U-CCCG---G -AGAU-G-GG 421 -GAU-AU-CC U--------- ------UC-- C(-GAAA-)G -GAGG-G--U UAAUACC-GA 481 AU-ACC---- ---------- -------G-C CC----G-GU ---GGA-(-- -------CGA 541 GA-G------ -)-UCC---A UC--G----G G---GAAAG- ---GGAGGC- CUC-UG---- 601 --(------- ---GCAA--- ---)------ -----CA-U| -GCUUC--C- G--CUC---- 661 ----CGGG-- AGG---A-|G CCCAU----- -GG|----CC C--AUCA-G- CUA-G---UU 721 GG-GA-GG-( GU-AAC-GG) -C-CUACC-A A|-GGC-GA- AGA------- -----CG-GG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAC ----GA-U-- CAG-C|C-AC -ACUGG-C-A 841 (CUGA-GA-C ACG)--GGCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 AGG-AAUUUU G-CGCAAU-- GG-GG-(GCA A)-CCC-UGA CNCA|-NCAA CCCC-GC-GU 961 G-U-GG-G-A A-GAA--G-G CU(--UU-CG --)GG-UUGU AAA--CCAC| UUUU-GU-AA 1021 --GG-GAC-- GA-A-GU-CC --CUU-CGG( C----AAAUA -----A---) CCGA-GG-GG 1081 ---------- -------G-A U-GA-CGGU- A-CCU-U-GC G-AA--UAAG ---------C 1141 -CACGACU-A ACUCU-GUG( CCA--GCAGC CGCGGUA-A) G-A-C-AGGG |-GUGG-C-- 1201 AAG-CGUUGU UC-GGAGUAA -CU-GGGC|G UAAA-GGGU- CUG-UAG-GU -G|-GU-UU- 1261 U-UC-AAG|U CUU---UGGU A-AAA-CA-C CG-UGG-C(- UC-A)A-CCA -UG-G-UUU- 1321 -GACC-AAGG A-GAC-UGGG A-GACUC-GA GGC-----UG G-GA-GAGGG AAG-C|GGAA 1381 UU-UCUGGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UC-AGAAAG- AAGN-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -CUUCCUG-- ---------- ---------- ---------G 1501 AAC--AG-AC CUGACA-CUG AG-A------ -------GA- C-GCAA-GC- GU-GGG-GA- 1561 GC-ACA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-CU--A 1621 AAC-G-AUGN A--UA-CU-- -------A|G -AU-GU-UUG -GU-AC---- ---------- 1681 -(CUA-GC)- ---------- ---------- ---------- -------GUA -CUGAG-UGU 1741 CG--UA---- --GC-(UAA- ---C)G-CG- AUAA-GUAUU C|C|G-CCU- G-GGAAGUAC 1801 GGC-C---(G CAA)---G-G UU-AAAACAC -AAA-GGAAU UG-UCGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-GC-UUG ACA-UG|U-- ---------C ---CGGA--- AUU----CUG 1981 -CAG-A--(- GAUG-)-CGG -G--AGUG-- C--------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GN-------- -----G--A| AUC-GGAACA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UC--CUU- 2281 AG--UUGC-C AG-CGG---- ---------- ---------- ----(---UU ---CGG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CCG|G 2701 G-CA-CU-C- U-AGG-GA-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-CU CAU-G-GC-C UUUAU-G-UC -CA--GGGC- 2821 C-ACA-CA-C GUG--CAACA AUGGC-C-GG -UA--CAGAC GGA-A-G-C- GA-GAC-C(G 2881 -AGA)GGUG- ---------- GA-GCAAA-U CCGAG-AAAG -CC-G-GUC- CCAGUUCGGA 2941 U-UGAGGUC- (UGCAAC-U- C)-GACCUCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GUA-(UC -AGC-AC)-G ACG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-CGAA A--GU-CUG- UU-GU-ACCU -GAA-G-UCG 3121 G-UGC-C-CC -AA-CCG--- ---------- ---------- -----(---- -GAAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- CGGAGG-G-A G-CC-GC-CC A-AGGU-AUG GCC-GG---- UAA-UUGG-U 3301 G---UG.... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS str.1108 4376 bp RNA RNA 02-JUL-1998 DEFINITION str. SBR1108. str. SBR1108. ACCESSION No information KEYWORDS No information. SOURCE str. SBR1108. str. SBR1108. ORGANISM str. SBR1108. REFERENCE 1 AUTHORS Bond,P.L., Hugenholtz,P., Keller,J. and Blackall,L.L. TITLE Bacterial community structures of phosphate-removing and non-phosphate-removing activated sludges from sequencing batch reactors JOURNAL Appl. Environ. Microbiol. 61 (5), 1910-1916 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X84534|g871655 isolate_name= SBR1108 BASE COUNT 100 a 86 c 130 g 68 t 3992 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... UGGC-GGC-G -UAN-CU--A ACGC-AUGCA A-GUC-GAAC 121 G--GG----G GA-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --CUGAG-GA (--GC----- ---------- ---------- 241 --------AA -)UC-UGAGG ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- UUC|-CU--- AGUG-GCAA- 361 -A-CG-GG-U GAGU---AAC -AC-GUAGG- UAA--UCU-A C-CUUG---G -AGUG-G-GG 421 -AAU-AA-CG G--------- ------AC-- C(-GAAA-)G -GUUC-G--C UAAUACC-GC 481 AU-GUG---- ---------- ---------- ---------- ---GUC-(-- --------GA 541 GA-------- -)-GAC---- ---------- ----CAAA-- ---GCC---- ---------- 601 --(------- ---UUCG--- ---)------ ---------| ----GG--C- G--CUC---- 661 ----UGAG-- AGG---A-|G CCUGC----- -GG|----CC G--AUCA-G- GUA-G---UU 721 GG-UG-GG-( GU-AAC-GG) -C-CUACC-A A|-GCC-GG- GGA------- -----CC-GG 781 U-AG-C-UG| -A-UCU--(G -AGA)-GGAU ----GA-C-- CAG-C|C-AC -ACUGG-C-A 841 (CUGA-GA-C ACG)--GGCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GC-G 901 AGG-AAUAUU G-CACAAU-- GG-AG-(GCA A)-CUC-UGA UGCA|-GUAA CGCC-GU-GU 961 G-A-GG-G-A A-GAA--G-A UU(--UU-CG --)GA-UUGU AAA--CCUC| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS 2.5.2.2-NI 4376 bp RNA RNA 09-JAN-1999 DEFINITION 2.5.2.2 NITROSPIRA_GROUP. ACCESSION No information KEYWORDS No information. SOURCE 2.5.2.2 NITROSPIRA_GROUP. ORGANISM 2.5.2.2 NITROSPIRA_GROUP. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 0 a 0 c 0 g 0 t 4376 others ORIGIN 1 x~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~-- ------~~~~ 541 ~~~~~~---- -~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~---~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- 1681 -(~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- -------~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~----~~~ 1981 ~~~~-~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~--- --~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~------ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~---~~ ---~~~--~~ 2341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- 3181 ---------- ---------- ---------- ------~)~~ ~~~~~~~~~~ ~~~~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS 2.5.2.2.1 4376 bp RNA RNA 09-JAN-1999 DEFINITION 2.5.2.2.1 NSP.MARINA_SUBGROUP. ACCESSION No information KEYWORDS No information. SOURCE 2.5.2.2.1 NSP.MARINA_SUBGROUP. ORGANISM 2.5.2.2.1 NSP.MARINA_SUBGROUP. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 0 a 0 c 0 g 0 t 4376 others ORIGIN 1 x~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~-- ------~~~~ 541 ~~~~~~---- -~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~---~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- 1681 -(~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- -------~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~----~~~ 1981 ~~~~-~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~--- --~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~------ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~---~~ ---~~~--~~ 2341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- 3181 ---------- ---------- ---------- ------~)~~ ~~~~~~~~~~ ~~~~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Nsp.marin2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Nitrospira marina.. ACCESSION No information KEYWORDS No information. SOURCE Nitrospira marina. ORGANISM Nitrospira marina. REFERENCE 1 AUTHORS Ehrich,S., Behrens,D., Lebedeva,E., Ludwig,W. and Bock,E. TITLE A new obligately chemolithoautotrophic, nitrite-oxidizing bacterium, Nitrospira moscoviensis sp. nov. and its phylogenetic relationship JOURNAL Arch. Microbiol. 164 (1), 16-23 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X82559|g971567 (bases 19 to 1521) BASE COUNT 385 a 358 c 491 g 269 t 2873 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 ....AG-AAC -GAAC-GC-- UGGC-GGC-G -CGC-CU--A ACAC-AUGCA A-GUC-GAAC 121 G--------- -----AGAA- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---UCCG-GG (--GC----- ---------- ---------- 241 --------AA -)CC-CGGUA GU-------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ----AA---- ---|------ AGUG-GCAA- 361 -A-CG-GG-U GAGG---AAC -AC-AUGGG- UAA--CCU-G C-CCUU---G -AGAA-G-GG 421 -AAU-AA-CC C--------- ------GC-- C(-GAAA-)G -GUGA-G--C UAAUACC-CU 481 AU-ACG---- ---------- -------C-U AU-C-AU--U ---UUU-(-- --------AC 541 GA-------- -)-AAA---A ---GA----U AG--GAAA-- ---GCCAGG- ----UC---- 601 --(------- ---GAG---- ---)------ -----GA--| -UCUGG--C- A--CUC---- 661 ----AAGG-- AGG---G-|G CUCAU----- -GU|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-GG-( GU-AAC-GG) -C-CUACC-A A|-GGC-UA- CGA------- -----CG-GG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-C-A 841 (CUGA-GA-U ACG)--GGCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 AGG-AAUAUU G-CGCAAU-- GG-GC-(GAA A)-GCC-UGA CGCA|-GCGA CGCC-GC-GU 961 G-G-GG-G-A U-GAA--G-G UU(--UU-CG --)GA-UUGU AAA--CCCC| UUUC-AU-GA 1021 --GG-AAA-- GA-UAAA-GU --GG-----( ------GUAA ---------) -----CC-AC 1081 ---------- -------U-C A-GA-CGGU- A-CCU-C-AA G-AA--GAAG ---------C 1141 -CACGGCU-A ACUUC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GAAG |-GUGG-C-- 1201 AAG-CGUUGU UC-GGAUUUA -CU-GGGC|G UAAA-GAGC- ACG-UAG-GC -G|-GU-UG- 1261 G-GA-AAG|C CUU---UUGG G-AAA-UC-U CC-CGG-C(- UU-A)A-CCG -GG-A-AAG- 1321 -GUCG-AGAG G-AAC-UAUU C-AGCUA-GA GGA-----CG G-GA-GAGGA GCG-C|GGAA 1381 UU-CCCGGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UC-GGGAAG- AAGG-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -CGCUCUG-- ---------- ---------- ---------G 1501 AAC--GU-AC CUGACG-CUG AG-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-CU--A 1621 AAC-G-AUGG G--UA-CU-- -------A|A -GU-GU-CGG -CG-G----- ---------- 1681 -(-UU-UA)- ---------- ---------- ---------- -------CC- -GUCGG-UGC 1741 CG--CA---- --GC-(UAA- ---C)G-CA- GUAA-GUACC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G UU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(ACGCAA-C G)--CGAAGA 1921 A-CCUUA-CC CAG-GU-UGG ACA-UG|C-- ---------U ---CGUG--- GUA----CGA 1981 -ACC-U--(- GAAA-)-GGG -U-GAGGA-- CC-------- ---UC----- --(GA----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------A A-)------- GG-------- ----GG---| AGC-GA-GCU |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GC-C(-GUG A)-GGUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GU AACCC-CU-G |-UC--UUC- 2281 AG--UUGC-C AU-CGG---- ---------- ---------- ---G(---UC ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CCG|A 2701 G-CA-CU-C- U-GAA-GA-G A-CU-G-CCC --AG(-GA-U AA)-CGG-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AG CAU-G-GC-C UUUAU-G-CC -UG--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGAC-C-GG -UA--CAGAG GGU-U-G-C- AA-UCCCC(G 2881 -CAA)GGGG- ---------- GA-GCCAA-U CUCAA-AAAA -CC-G-GCC- UCAGUUCAGA 2941 U-UGGGGUC- (UGCAAC-U- C)-GACCCCA -UGAAGG-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AC)-G CCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-CGAA A--GU-CAG- CU-GU-ACCA -GAA-G-UCA 3121 C-UGGCG-CC -AA-CCC--- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- GGGAGG-C-A G-GU-GC-CC A-AGGU-AUG GUU-GG-UA- AUU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAG G(GGA-A)CC UGCGGC--U. .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Nsp.marina 4376 bp RNA RNA 02-JUL-1998 DEFINITION Nitrospira marina str. Nb-295. ACCESSION No information KEYWORDS No information. SOURCE Nitrospira marina str. Nb-295. ORGANISM Nitrospira marina. REFERENCE 1 AUTHORS Teske,A., Alm,E., Regan,J.M., Toze,S., Rittmann,B.E. and Stahl,D.A. TITLE Evolutionary relationships among ammonia- and nitrite-oxidizing bacteria JOURNAL J. Bacteriol. 176, 6623-6630 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: L35501|g530902 isolate_name= Nb-295 BASE COUNT 370 a 335 c 470 g 261 t 2940 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .........C -GAAC-GC-- UGGC-GGC-G -CGC-CU--A ACAC-AUGCA A-GUC-GAAC 121 G--------- -----AGAA- ---------- ---------- ---------- ---------- 181 ---------- ---------- ----UCG-GG (--GC----- ---------- ---------- 241 --------AA -)CC-CGGUA GU-------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ----AA---- ---|------ AGUG-GCAA- 361 -A-CG-GG-U GAGG---AAC -AC-AUGGG- UAA--CCU-G C-CCUU---G -AGAA-G-GG 421 -AAU-AA-CC C--------- ------GC-- C(-GAAA-)G -GUGA-G--C UAAUACC-CU 481 AU-ACG---- ---------- -------C-U AU-C-AU--U ---UUU-(-- --------AC 541 GA-------- -)-AAA---A ---GA----U AG--GAAA-- ---GCCAGG- ----UC---- 601 --(------- ---GAG---- ---)------ -----GA--| -UCUGG--C- A--CUC---- 661 ----AAGG-- AGG---G-|G CUCAU----- -GU|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-GG-( GU-AAC-GG) -C-CUACC-A A|-GGC-UA- CGA------- -----CG-GG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-C-A 841 (CUGA-GA-U ACG)--GGCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 AGG-AAUAUU G-CGCAAU-- GG-GC-(GAA A)-GCC-UGA CGCA|-GCGA CGCC-GC-GU 961 G-G-GG-G-A U-GAA--G-G UU(--UU-CG --)GA-UUGU AAA--CCCC| UUUC-AU-GA 1021 --GG-AAA-- GA-UAAA-GU --GG-----( ------GUAA ---------) -----CC-AC 1081 ---------- -------U-C A-GA-CGGU- A-CCU-C-AA G-AA--GAAG ---------C 1141 -CACGGCU-A ACUUC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GAAG |-GUGG-C-- 1201 AAG-CGUUGU UC-GGAUUUA -CU-GGGC|G UAAA-GAGC- ACG-UAG-GC -G|-GU-UG- 1261 G-GA-AAG|C CUU---UUGG G-AAA-UC-U CC-CGG-C(- UU-A)A-CCG -GG-A-AAG- 1321 -GUCG-AGAG G-AAC-UAUU C-AGCUA-GA GGA-----CG G-GA-GAGGA GCG-C|GGAA 1381 UU-CCCGGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UC-GGGAAG- AAGG-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -CGCUCUG-- ---------- ---------- ---------G 1501 AAC--GU-AC CUGACG-CUG AG-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-CU--A 1621 AAC-G-AUGG G--UA-CU-- -------A|A -GU-GU-CGG -CG-G----- ---------- 1681 -(-UU-UA)- ---------- ---------- ---------- -------CCC -GUCGG-UGC 1741 CG--CA---- --GC-(UAA- ---C)G-CA- GUAA-GUACC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G UU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(ACGCAA-C G)--CGAAGA 1921 A-CCUUA-CC CAG-GU-UGG ACA-UG|C-- ---------U ---CGUG--- GUA----CGA 1981 -ACC-U--(- GAAA-)-GGG -U-GAGGA-- CC-------- ---UC----- --(GA----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------A A-)------- GG-------- ----GG---| AGC-GA-GCU |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GC-C(-GUG A)-GGUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GU AACCC-CU-N |-UC--NNN- 2281 NG--UUGC-N AU-NGG---- ---------- ---------- ---G(---UN ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CCG|A 2701 G-NN-CU-N- U-NAA-NA-N A-CU-G-CCC --AG(-GA-U AA)-CNG-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AG CAU-G-GC-C UUUAU-G-CC -UG--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGAC-C-GG -UA--CAGAG GGU-U-G-C- AA-UNC-N(G 2881 -CAA)GGGG- ---------- GA-GCNAA-U CUNAA-AAAA -CC-G-GCC- UNAGUUNAGA 2941 U-UGGGGUC- (UGCAAC-U- N)-GACCCCA -UGAAGG-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AC)-G CCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-CNAA A--GU-CAG- CU-GU-ACCA -GAA-G-UCA 3121 C-UGGCG-CC -AA-CCC--- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-C-A G-GU-GN-CC A-AGGU-AUG GUU-GG-UA- AUU-GGGG-U 3301 G......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS 2.5.2.2.2 4376 bp RNA RNA 09-JAN-1999 DEFINITION 2.5.2.2.2 NSP.MOSCOVIENSIS_SUBGROUP. ACCESSION No information KEYWORDS No information. SOURCE 2.5.2.2.2 NSP.MOSCOVIENSIS_SUBGROUP. ORGANISM 2.5.2.2.2 NSP.MOSCOVIENSIS_SUBGROUP. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 0 a 0 c 0 g 0 t 4376 others ORIGIN 1 x~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~-- ------~~~~ 541 ~~~~~~---- -~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~---~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- 1681 -(~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- -------~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~----~~~ 1981 ~~~~-~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~--- --~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~------ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~---~~ ---~~~--~~ 2341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- 3181 ---------- ---------- ---------- ------~)~~ ~~~~~~~~~~ ~~~~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS str.1015 4376 bp RNA RNA 02-JUL-1998 DEFINITION str. SBR1015. str. SBR1015. ACCESSION No information KEYWORDS No information. SOURCE str. SBR1015. str. SBR1015. ORGANISM str. SBR1015. REFERENCE 1 AUTHORS Bond,P.L., Hugenholtz,P., Keller,J. and Blackall,L.L. TITLE Bacterial community structures of phosphate-removing and non-phosphate-removing activated sludges from sequencing batch reactors JOURNAL Appl. Environ. Microbiol. 61 (5), 1910-1916 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X84460|g871581 isolate_name= SBR1015 BASE COUNT 98 a 96 c 133 g 75 t 3974 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... UGGC-GGC-G -NGC-CU--A AUAC-AUGCA A-GUC-GAGC 121 G--------- -----A---- ---------- ---------- ---------- ---------- 181 ---------- ---------- GAAGACG-UA (--GC----- ---------- ---------- 241 --------AA -)UA-CGUUU GU-------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ----AA---- ---|------ AGCG-GCGA- 361 -A-CG-GG-U GAGG---AAU -AC-NUGGG- UAG--CCU-A C-CCUC---G -AGU--G-GG 421 -AAU-AA-CU A--------- ------AC-- C(-GAAA-)G -GUUA-G--C UAAUACC-GC 481 AU-ACG---- ---------- -------G-C UC-C----UG ---GUC-(-- --------UG 541 CG-------- -)-GAU---C G--GG----A GA--GAAA-- ---GCGAUA- ----CC---- 601 --(------- ---GUG---- ---)------ -----GG--| -UAUCG--C- G--CUC---- 661 ----UUGG-- AUG---G-|G CUCAU----- -GU|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-AG-( GU-AAC-GG) -C-UCACC-A A|-GGC-UU- CGA------- -----CG-GG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAC ----GA-U-- CAG-C|C-AC -ACUGG-C-A 841 (CUGC-GA-C ACG)--GGCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 AGG-AAUAUU G-CGCAAU-- GG-GC-(GAC A)-GCC-UGA CGCA|-GCGA CGCC-GC-GU 961 G-G-GG-G-A U-GAA--G-G UC(--UU-CG --)GA-UUGU AAA--CCCC| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS str.2046 4376 bp RNA RNA 02-JUL-1998 DEFINITION str. SBR2046. str. SBR2046. ACCESSION No information KEYWORDS No information. SOURCE str. SBR2046. str. SBR2046. ORGANISM str. SBR2046. REFERENCE 1 AUTHORS Bond,P.L., Hugenholtz,P., Keller,J. and Blackall,L.L. TITLE Bacterial community structures of phosphate-removing and non-phosphate-removing activated sludges from sequencing batch reactors JOURNAL Appl. Environ. Microbiol. 61 (5), 1910-1916 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X84584|g871705 isolate_name= SBR2046 BASE COUNT 100 a 96 c 133 g 75 t 3972 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... UGGC-GGC-G -CGC-CU--A AUAC-AUGCA A-GUC-GAGC 121 G--------- -----A---- ---------- ---------- ---------- ---------- 181 ---------- ---------- GAAGACG-UA (--GC----- ---------- ---------- 241 --------AA -)UA-CGUUU GU-------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ----AA---- ---|------ AGCG-GCGA- 361 -A-CG-GG-U GAGG---AAU -AC-AUGGG- UAA--CCU-A C-CCUC---G -AGUG-G-GG 421 -AAU-AA-CU A--------- ------AC-- C(-GAAA-)G -GUUA-G--C UAAUACC-GC 481 AU-ACG---- ---------- -------G-C UC-C----UG ---GUC-(-- --------UG 541 CG-------- -)-GAU---C G--GG----A GA--GAAA-- ---GCGAUA- ----CC---- 601 --(------- ---GUG---- ---)------ -----GG--| -UAUCG--C- G--CUC---- 661 ----UUGG-- AUG---G-|G CUCAU----- -GU|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-AG-( GU-AAC-GG) -C-UCACC-A A|-GGC-UU- CGA------- -----CG-GG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAC ----GA-U-- CAG-C|C-AC -ACUGG-C-A 841 (CUGC-GA-C ACG)--GGCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 AGG-AAUAUU G-CGCAAU-- GG-GC-(GAC A)-GNC-UGA CGCA|-GCGA CGCC-GC-GU 961 G-G-GG-G-A U-GAA--G-G UC(--UU-CG --)GA-UUGU AAA--CCCC| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS str.1024 4376 bp RNA RNA 02-JUL-1998 DEFINITION str. SBR1024. str. SBR1024. ACCESSION No information KEYWORDS No information. SOURCE str. SBR1024. str. SBR1024. ORGANISM str. SBR1024. REFERENCE 1 AUTHORS Bond,P.L., Hugenholtz,P., Keller,J. and Blackall,L.L. TITLE Bacterial community structures of phosphate-removing and non-phosphate-removing activated sludges from sequencing batch reactors JOURNAL Appl. Environ. Microbiol. 61 (5), 1910-1916 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X84468|g871589 isolate_name= SBR1024 BASE COUNT 100 a 95 c 133 g 76 t 3972 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... UGGC-GGC-G -CGC-CU--A AUAC-AUGCA A-GUC-GAGC 121 G--------- -----A---- ---------- ---------- ---------- ---------- 181 ---------- ---------- GAAGACG-UA (--GC----- ---------- ---------- 241 --------AA -)UA-CGUUU GU-------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ----AA---- ---|------ AGCG-GCGA- 361 -A-CG-GG-U GAGG---AAU -AC-AUGGG- UAA--CCU-A C-CUUC---G -AGUG-G-GG 421 -AAU-AA-CU A--------- ------GC-- C(-GAAA-)G -GUUA-G--C UAAUACC-GC 481 AU-ACG---- ---------- -------A-C UC-C----UG ---GUC-(-- --------UG 541 CG-------- -)-GAU---C G--GG----A GA--GAAA-- ---GCGAUA- ----CC---- 601 --(------- ---GUG---- ---)------ -----GG--| -UAUCG--C- G--CUC---- 661 ----UUGG-- AUG---G-|G CUCAU----- -GU|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-AG-( GU-AAC-GG) -C-UCACC-A A|-GGC-UU- CGA------- -----CG-GG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAC ----GA-U-- CAG-C|C-AC -ACUGG-C-A 841 (CUGC-GA-C ACG)--GGNC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 AGG-AAUAUU G-CGCAAU-- GG-GC-(GAC A)-GCC-UGA CGCA|-GCGA CGCC-GC-GU 961 G-G-GG-G-A U-GAA--G-G UC(--UU-CG --)GA-UUGU AAA--CCCC| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Nsp.moscov 4376 bp RNA RNA 02-JUL-1998 DEFINITION Nitrospira moscoviensis str. M-1 DSM 10035. ACCESSION No information KEYWORDS No information. SOURCE Nitrospira moscoviensis str. M-1 DSM 10035. ORGANISM Nitrospira moscoviensis. REFERENCE 1 AUTHORS Ehrich,S., Behrens,D., Lebedeva,E., Ludwig,W. and Bock,E. TITLE A new obligately chemolithoautotrophic, nitrite-oxidizing bacterium, Nitrospira moscoviensis sp. nov. and and its phylogenetic relationship JOURNAL Arch. Microbiol. 164, 16-23 (1995) STANDARD No information COMMENTS Organism information Culture collection: DSM 10035 Sequence information (bases 1 to 4376) Corresponding GenBank entry: X82558|g971568 isolate_name= M-1 BASE COUNT 366 a 377 c 509 g 277 t 2847 others ORIGIN 1 .......... .......... .......... .......... AGAGUU(U-G A)U-NNU|-G 61 GCUCAG-AAC -GAAC-GC-- UGGC-GGC-G -CGC-CU--A AUAC-AUGCA A-GUC-GAGC 121 G--------- -----A---- ---------- ---------- ---------- ---------- 181 ---------- ---------- GAAGGCG-UA (--GC----- ---------- ---------- 241 --------AA -)UA-CGCUU GU-------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ----AA---- ---|------ AGCG-GCGA- 361 -A-CG-GG-U GAGG---AAU -AC-AUGGG- UAA--CCU-A C-CCUU---G -AGUG-G-GG 421 -AAU-AA-CC A--------- ------GC-- C(-GAAA-)G -GUUG-G--C UAAUACC-GC 481 AU-ACG---- ---------- -------A-U UC-C----CG ---GAC-(-- --------UG 541 CG-------- -)-GUU---C G--GG----A AA--GAAA-- ---GCGUUA- ----CC---- 601 --(------- ---GUG---- ---)------ -----GG--| -UAGCG--C- G--CUC---- 661 ----UUGG-- AUG---G-|G CUCAU----- -GU|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-AG-( GU-AAC-GG) -C-UCACC-A A|-GGC-UU- CGA------- -----CG-GG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAC ----GA-U-- CAG-C|C-AC -ACUGG-C-A 841 (CUGC-GA-C ACG)--GGCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 AGG-AAUAUU G-CGCAAU-- GG-GC-(GAA A)-GCC-UGA CGCA|-GCGA CGCC-GC-GU 961 G-G-GG-G-A U-GAA--G-G UC(--UU-CG --)GA-UUGU AAA--CCC-| UUUC-GG-GA 1021 --GG-GAA-- GA-UGGA-AC --GG-----( ------GUAA ---------) -----CC-GU 1081 ---------- -------U-C G-GA-CGGU- A-CCU-C-CA G-AA--GCAG ---------C 1141 -CACGGCU-A ACUUC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GAAG |-GUGG-C-- 1201 AAG-CGUUGU UC-GGAUUCA -CU-GGGC|G UACA-GGGA- GCG-UAG-GC -G|-GU-UG- 1261 G-GU-AAG|C CCU---CCGU G-AAA-UC-U CC-GGG-C(- CU-A)A-CCC -GG-A-AAG- 1321 -UGCA-GAGG G-GAC-UGCU C-GGCUU-GA GGA-----UG G-GA-GAGGA GCG-C|GGAA 1381 UU-CCCGGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UC-GGGAGG- AAGG-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -CGCUCUG-- ---------- ---------- ---------G 1501 AAC--AU-UU CUGACG-CUG AG-G------ -------CU- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-UU--A 1621 AAC-U-AUGG A--UA-CU-- -------A|A -GU-GU-CGG -CG-G----- ---------- 1681 -(-GU-UA)- ---------- ---------- ---------- --------CC -GCCGG-UGC 1741 CG--CA---- --GC-(UAA- ---C)G-CA- GUAA-GUAUC C|C|G-CCU- G-GGAAGUAC 1801 GGC-C---(G CAA)---G-G UU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(ACGCAA-C G)--CGAAGA 1921 A-CCUUA-CC CAG-GC-UGG ACA-UG|C-- ---------A ---CGUA--- GUA----GGA 1981 -GGA-U--(- GAAA-)-GUC -C-GACGA-- GG-------- ---UA----- --(GC----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------A A-)------- UA-------- ----CC---| AGC-GU-GCU |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GC-C(-GUG A)-GGUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-CU-G |-UC--UUC- 2281 AG--UUGC-C AC-CGG---- ---------- ---------- ---G(---UC ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CCG|G 2701 G-AA-CU-C- U-GGA-GA-G A-CU-G-CCC --AG(-GA-G AA)-CGG-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AG CAU-G-GC-C UUUAU-G-CC -UG--GGGC- 2821 C-ACA-CA-C GUG--CUACA AUGGC-C-GG -CA--CAAAG AGC-U-G-C- AA-ACC-C(G 2881 -UGA)GGGG- ---------- GA-GCCAA-U CUCAA-AAAA -CC-G-GCC- UCAGUUCAGA 2941 U-UGAGGUC- (UGCAAC-U- C)-GACCUCA -UGAAGG-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AC)-G CCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-CGAA A--GU-UUG- UU-GU-ACCU -GAA-G-UCG 3121 U-CGACG-CC -AA-CC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGGGG-C-A G-GC-GC-CC A-CGGU-AUG ACC-GA-UG- AUU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAG G(GGA-A)CC UGCGGC--UG GAUCACCUCC 3361 UUUN|N.... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS str.2016 4376 bp RNA RNA 02-JUL-1998 DEFINITION str. SBR2016. str. SBR2016. ACCESSION No information KEYWORDS No information. SOURCE str. SBR2016. str. SBR2016. ORGANISM str. SBR2016. REFERENCE 1 AUTHORS Bond,P.L., Hugenholtz,P., Keller,J. and Blackall,L.L. TITLE Bacterial community structures of phosphate-removing and non-phosphate-removing activated sludges from sequencing batch reactors JOURNAL Appl. Environ. Microbiol. 61 (5), 1910-1916 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X84560|g871681 isolate_name= SBR2016 BASE COUNT 99 a 92 c 133 g 79 t 3973 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... UGGC-GGC-G -CGN-CU--A AUAC-AUGCA A-GUC-GAGC 121 G--------- -----A---- ---------- ---------- ---------- ---------- 181 ---------- ---------- GAAGGUG-UA (--GC----- ---------- ---------- 241 --------AA -)UA-CACUU GU-------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ----AA---- ---|------ AGCG-GCGA- 361 -A-CG-GG-U GAGG---AAU -AC-AUGGG- UAA--UCU-A C-CAUC---G -AGUG-G-GG 421 -AAU-AA-CC A--------- ------AC-- C(-GAAA-)G -GUUG-G--C UAAUACC-GC 481 GU-ACG---- ---------- -------C-U UC-U-----G ---AGC-(-- -------CUU 541 CG-U------ -)-GUU---C ---GG----A AG--GAAA-- ---GCCGNA- ----CU---- 601 --(------- ---GUG---- ---)------ -----AG--| -UGCGG--C- G--CUC---- 661 ----UUUG-- AUG---A-|G CUCAU----- -GU|----CC U--AUCA-G- CUU-G---UU 721 GG-UA-GG-( GU-AAC-GG) -C-CUACC-A A|-GGC-UU- UGA------- -----CG-GG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAC ----GA-U-- CAG-C|C-AC -ACUGG-C-A 841 (CUGC-GA-C ACG)--GGCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- G-A---GU-A 901 AGG-GAUAUU G-CGCAAU-- GG-GC-(GAA A)-GCC-UGA CGCA|-GCGA CGCC-GC-GU 961 G-G-GG-G-A U-GAA--G-G UC(--UU-CG --)GA-UUGU AAA--CCCC| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS str.1065 4376 bp RNA RNA 02-JUL-1998 DEFINITION str. SBR1065. str. SBR1065. ACCESSION No information KEYWORDS No information. SOURCE str. SBR1065. str. SBR1065. ORGANISM str. SBR1065. REFERENCE 1 AUTHORS Bond,P.L., Hugenholtz,P., Keller,J. and Blackall,L.L. TITLE Bacterial community structures of phosphate-removing and non-phosphate-removing activated sludges from sequencing batch reactors JOURNAL Appl. Environ. Microbiol. 61 (5), 1910-1916 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X84499|g871620 isolate_name= SBR1065 BASE COUNT 99 a 95 c 132 g 75 t 3975 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... UGGC-GGC-G -CGC-CU--A AUAC-NUGCA A-GUC-GAAC 121 G--------- -----A---- ---------- ---------- ---------- ---------- 181 ---------- ---------- GAAUGUG-UA (--GC----- ---------- ---------- 241 --------AA -)UA-CACAU GU-------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ----AC---- ---|------ AGUG-GCGA- 361 -A-CG-GG-U GAGG---ACU -AC-AUGGG- UAA--CCU-A C-CCUC---G -AGUG-G-GG 421 -AAU-AA-CU A--------- ------GC-- C(-GAAA-)G -GUUA-G--C UAAUACC-GC 481 GU-ACG---- ---------- -------C-C UC-C----UG ---GAC-(-- --------UG 541 CG-------- -)-GUU---C G--GG----A GG--GAAA-- ---GCGAUA- ----CC---- 601 --(------- ---GUG---- ---)------ -----GG--| -UAUCG--C- G--CUC---- 661 ----UUGG-- AUG---G-|G CUCAU----- -GC|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-AG-( GU-AAC-GG) -C-UCACC-A A|-GGC-AU- CGA------- -----CG-GG 781 U-AG-C-UG| -A-UCU--(G -AGA)-GGAU ----GA-U-- CAG-N|C-AC -ACUGG-C-A 841 (CUGC-GA-C ACG)--GGNC -AGA-C-UCC -(UACG)--G GAG-GC-AG- N-A---GU-A 901 AGG-AAUAUU G-CGCAAU-- GG-GC-(GAA A)-GCC-UGA CGCA|-GCGA CGCC-GC-GU 961 G-G-GG-G-A U-GAA--G-G UC(--UU-CG --)GA-UUGU AAA--CCCC| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS 2.5.3-TDV 4376 bp RNA RNA 09-JAN-1999 DEFINITION 2.5.3 TDV.YELLOWSTONII_ASSEMBLAGE. ACCESSION No information KEYWORDS No information. SOURCE 2.5.3 TDV.YELLOWSTONII_ASSEMBLAGE. ORGANISM 2.5.3 TDV.YELLOWSTONII_ASSEMBLAGE. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 0 a 0 c 0 g 0 t 4376 others ORIGIN 1 x~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~-- ------~~~~ 541 ~~~~~~---- -~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~---~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- 1681 -(~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- -------~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~----~~~ 1981 ~~~~-~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~--- --~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~------ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~---~~ ---~~~--~~ 2341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- 3181 ---------- ---------- ---------- ------~)~~ ~~~~~~~~~~ ~~~~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Tdv.yellow 4376 bp RNA RNA 02-JUL-1998 DEFINITION Thermodesulfovibrio yellowstonii str. YP87 ATCC 51303 (T). ACCESSION No information KEYWORDS No information. SOURCE Thermodesulfovibrio yellowstonii str. YP87 ATCC 51303 (T). ORGANISM Thermodesulfovibrio yellowstonii. REFERENCE 1 AUTHORS Henry,E.A., Devereux,R., Maki,J.S., Gilmour,C.C., Woese,C.R., Mandelco,L., Schauder,R., Remsen,C.C. and Mitchell,R. TITLE Characterization of a new thermophilic sulfate-reducing bacterium. Thermodesulfovibrio yellowstonii gen. nov. and sp. nov.: its phylogenetic relationship to Thermodesulfoacterium commune and their origins deep within the bacterial domain JOURNAL Arch. Microbiol. 161, 62-69 (1994) STANDARD No information COMMENTS Organism information Culture collection: ATCC 51303 (T) Sequence information (bases 1 to 4376) Corresponding GenBank entry: L14619 geog_source= Sedge Bay, Yellowstone Lake, YNP, Wyoming biol_source= hydrothermal vent water isolate_name= YP87 BASE COUNT 247 a 257 c 379 g 199 t 3294 others ORIGIN 1 .......... .......... .......... .......... .GAGUU(U-G A)U-CCU|-G 61 GCUCAG-AGC -GAAC-GC-- UGGC-GGC-G -UGC-CU--A ACAC-AUGCA A-GUC-GAGC 121 G--GN-A--- ---------- ---------- ---------- ---------- ---------- 181 ---------- -------CCA GAAAUGG-AG (--GU----- ---------- ---------- 241 --------AA -)CU-UUAUU UCUNG----- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UU--- AGCG-GCGA- 361 -A-CG-GG-U GAGU---AAC -YY-GUGGG- UNN--NCU-G C-CCUU---N -GGAG-G-AG 421 -GAU-AA-CN N--------- ------NG-- G(-GAAA-)C -CUNA..... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .....C-UCC -(NNCG)--G GAG-GC-AG- C-A---GU-G 901 GGG-NAUAUU G-GGCAAU-- GG-GC-(GAA A)-GCC-NNA CCCA|-GCGA CGCN-GN-GU 961 G-N-GG-G-A A-GAA--G-G CN(--NN-CG --)NN-UUGU AAA--CNNN| -UUU-GC-AG 1021 --GG-GAC-- GA-C------ ---------( ------ACAG ---------) ---------- 1081 ---------- ---------- --GN-CGGU- A-CCC-N-GC G-AA--UAAG ---------C 1141 -CACGGC... .........( .......... .GCGGUA-A) G-A-C-AGAG |-GUGG-C-- 1201 NAG-CGUUGC UC-GGAUUCA -CU-NNNN|N UAAA-GGGC- GCG-UAG-GU -G|-GU-UU- 1261 U-GU-AAG|U CUA---AGGU G-GAA-UU-C CA-CAG-C(- UU-A)A-CUG -UG-G-NAC- 1321 -UGCN-NNUG A-UAC-UGCA A-GGCUU-GA GUC-----AG G-NA-GAGGA GGG-C|GGNA 1381 UU-CCCGGU- GUA-GCG(-G UGNAA)-UGC -GU-AGAU-A UC-GGGAGG- AAGG-CCGG- 1441 -U-G-GC(-G AA-G)GCGC- -NNNNNUG-- ---------- ---------- ---------G 1501 GCC--NN-CA CUGACA-CUG AG-G------ -------CG- C-NNAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-CU--A 1621 AAC-G-GUGG G--CA-CU-- -------A|G -GU-GU-GGG -GU-CC---- ---------- 1681 -(-AU-AU)- ---------- ---------- ---------- -------NGA -CUCUG-UGC 1741 CG--AA---- --GG-(GAA- ---A)C-CA- UUNA-GUGCC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G UU-GAAACUC -AAA-GGAAU UG-ACGGG-G -N-C-CN--G 1861 C-A--NA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUNNNN-C G)--CGAAGA 1921 A-CCUUA-CC UGG-GC-UUG ACA-UG|C-- ---------U ---GGUG--- GUA----GGN 1981 -ACC-C--(- GAAA-)-GGG -N-GACGA-- CC-------U UAGGG----- --(GU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------A A-)------- CUCUAA---- ----GG---| AGC-CAGNNA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GC-C(-GUG A)-GGUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC NACCC-CU-A |-UC--CCC- 2281 UG--UUGC-C AU-CAG---- ---------- ---------- ---G(---UA ---AAG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CUG|G 2701 G-CN-CU-C- U-G-G-GA-- A-CU-G-CCG --GC(-GA-C NA)-GCC-G- -GAGG-N-AG 2761 G-NG-GGG-N UG-ACG--UC -A-AGUC-CG CAU-G-GC-C CUUAU-G-UC -CA--GGGC- 2821 U-ACA-CA-C GUG--CUACN AUGGG-C-GC -UA--UAGNG GGU-A-G-C- AA-GCC-C(G 2881 -CGA)GGGU- ---------- GA-GCCAA-U CCCNA-NAAA -GC-G-CNC- NCNGUNGGGN 2941 N-CGGAGUC- (UGCNAU-U- C)-GNCUCCG -UGAACC-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GCA-(UC -AGC-NN)-G GCG-CGGUN- AAUAC-G... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Mgb.bavarc 4376 bp RNA RNA 02-JUL-1998 DEFINITION Magnetobacterium bavaricum.. ACCESSION No information KEYWORDS No information. SOURCE Magnetobacterium bavaricum. ORGANISM Magnetobacterium bavaricum. REFERENCE 1 AUTHORS Spring,S., Amann,R., Ludwig,W., Schleifer,K.H., Van Gemerden ,H. and Petersen,N. TITLE Dominating role of an unusual magnetotactic bacterium in the microaerobic zone of a freshwater sediment JOURNAL Appl. Environ. Microbiol. 59, 2397-2403 (1993) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X71838|g434308 Former RDP Sids: Mb.bavaric NB: Genbank entry has wrongly named genus former name Methanobacterium bavaricum BASE COUNT 386 a 336 c 488 g 303 t 2863 others ORIGIN 1 .......... .......... .......... .......... AGAGUU(U-G A)U-UUU|-G 61 GCUCAG-AGC -GAAC-GC-- UGGC-GGC-G -UGC-CU--A ACAC-AUGCA A-GUC-GAAC 121 G--GA----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- UCAUGAG-UC (--GC----- ---------- ---------- 241 --------AA -)GA-UUCAU GG-------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UU--- AGUG-GCGC- 361 -A-CG-GG-U GAGU---AAC -GC-GUAGG- UAA--UCU-G C-CUUC---A -GGAC-C-GG 421 -AAC-AA-CC A--------- ------UU-- G(-GAAA-)C -GAUG-G--C UAAUCCC-GG 481 AU-AAG---- ---------- -------A-C CA-C--G-GA ----UA-(-- --------GC 541 AA-------- -)-UG----A CU-GU----G GU--AAAA-- ---GGA---- ---------- 601 --(------- ---GCAA--- ---)------ ---------| ----UU--C- A--CCU---- 661 ----GGAG-- AUG---A-|G CCUGC----- -GU|----CC U--AUCA-G- GUA-G---UU 721 GG-UA-AG-( GU-AAC-GG) -C-UUACC-A A|-GCC-UA- AGA------- -----CG-GG 781 U-AG-C-CG| -G-UCU--(G -AGG)-GGAU ----GA-A-- CGG-C|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 AGG-AAUUUU G-CGCAAU-- GG-GG-(GAA A)-CCC-UGA CGCA|-GCGA CGCC-GC-GU 961 G-G-AG-G-A A-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--CUCC| UUUU-GU-AG 1021 --GG-AAA-- GA-------- ---------( -----UGAUG ---------) ---------- 1081 ---------- ---------- A-CG-GUAC- C-UUA-C-GA ---A--UAAG ---------C 1141 -CACGGCU-A ACUCU-GUG( CCA--GCAGC CGCGGUA-A) G-A-C-AGAG |-GUGG-C-- 1201 AAG-CGUUGC UC-GGAAUUA -CU-GGGC|U UAAA-GGGU- GCG-UAG-GC -G|-GU-UA- 1261 G-AU-AAG|U UUG---GGGU G-GAA-UG-C UC-GGG-C(- UC-A)A-CCC -GG-G-AAU- 1321 -UGCC-UUGA A-AAC-UGUU U-AACUU-GA GUA-----AG C-GA-GGGGA UGG-C|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UC-AGGAGG- AAGG-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -CCAUCAG-- ---------- ---------- ---------G 1501 CGC--UU-AA CUGACG-CUG AG-G------ -------CA- C-GAAA-GC- GU-GGG-GA- 1561 UC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-CU--A 1621 AAC-G-GUGG G--UA-CU-- -------A|G -GU-AU-AGG -GC-UC---- ---------- 1681 -(-GA-UA)- ---------- ---------- ---------- -------GGG -UUCUG-UGC 1741 CG--AA---- --GG-(GAA- ---A)C-CA- AUAA-GUACC C|C|G-CCU- G-GGAAGUAC 1801 GGC-C---(G CAA)---G-G UU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(ACGCAA-C G)--CGAGGA 1921 A-CCUUA-CC UGG-GU-UUG ACA-UG|U-- ---------A ---AGUG--- GUA----GGA 1981 -GUC-C--(- GAAA-)-GGA -U-AACGA-- CU-------- --CCC----- --(GC----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------A A-)------- GGG------- ----AG---| AGC-UU-GCA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GC-C(-GUG A)-GGUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-A |-UU--CUC- 2281 UG--UUGC-C AU-CGG---- ---------- ---------- ---G(---UA ---AAG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CCG|G 2701 G-CG-CU-C- U-GAG-AA-A A-CU-G-CCG --GC(-GA-U GA)-GUU-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAU-G-UC -CA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-U-AU -UA--CAGAG GGA-A-G-C- AA-GAU-C(G 2881 -CGA)GGUG- ---------- GA-GCAAA-U CCCU--AAAA -AU-A-GUC- UUAGUUGGGA 2941 U-CGGAGUC- (UGCAAC-U- C)-GACUCCG -UGAACG-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -ACU-AC)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-CGAA A--GU-CUG- CU-GU-ACCC -GAA-G-CGG 3121 G-UGA-G-CU -AA-CCA--- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- UGGAGG-C-A G-CU-CA-CG A-AGGU-AUG GUA-GG-UG- AUU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAG G(GGA-A)CC UGCGGC--UG GAUCACCUCC 3361 UUU~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS env.OPI-2 4376 bp RNA RNA 02-JUL-1998 DEFINITION clone OPI-2.. ACCESSION No information KEYWORDS No information. SOURCE clone OPI-2. ORGANISM clone OPI-2. REFERENCE 1 AUTHORS Kopczynski,E.D., Bateson,M.M. and Ward,D.M. TITLE Recognition of chimeric small-subunit ribosomal DNAs composed of genes from uncultivated microorganisms JOURNAL Appl. Environ. Microbiol. 60, 746-748 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: L22045 BASE COUNT 338 a 306 c 479 g 284 t 2969 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .........C -GAAC-GC-- UGGC-GGC-G -UGC-CU--A ACAC-AUGCA A-GUC-GGAC 121 G--GA----- ---------- ---------- ---------- ---------- ---------- 181 ---------- -----CUUAU GUCUGAA-GG (--GU----- ---------- ---------- 241 --------AA -)CU-GGAGG GUGUAAG--- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UU--- AGUG-GCGC- 361 -A-CG-GG-U GAGU---AAC -AC-GUAGA- UAA--CCU-A C-CCUU---A -AGAG-G-GG 421 -GAC-AA-CA C--------- ------AG-- G(-GAAA-)C -UUGU-G--C UAAUACC-GC 481 AU-AAG---- ---------- -------G-C CA-C--G-GG ----UU-(-- --------GG 541 GA-------- -)-UA----C UU-GU----G GU--AAAAG- ---GGUG--- ---------- 601 --(------- ---GCGA--- ---)------ ---------| ---CAC--C- G--CUU---- 661 ----AGGG-- AUG---G-|G UCUGC----- -GG|----CC U--AUCA-G- GUA-G---UU 721 GG-UG-GG-( GU-AAU-GG) -C-CUACC-A A|-GCC-UA- AGA------- -----CG-GG 781 U-AA-C-CG| -G-ACU--(G -AGA)-GGUU ----GG-A-- CGG-U|C-AC -ACUGG-A-A 841 (CUGA-GA-U ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUUUU G-CACAAU-- GG-GC-(GGA A)-GCC-UGA UGCA|-GCGA CGCC-GC-GU 961 G-G-AG-G-A A-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--CUCC| UUUU-AU-AG 1021 --GG-GGC-- AA-------- ---------( -----UGGUG ---------) ---------- 1081 ---------- ---------- A-UG-GUAC- C-CUA-U-GA ---A--UAAG ---------C 1141 -CACGGCU-A ACUCU-GUG( CCA--GCAGC CGCGGUA-A) G-A-C-AGAG |-GAGG-C-- 1201 GAG-CGUUGU UC-GGAAUUA -CU-GGGC|U UAAA-GGGN- GNG-UAG-GC -G|-GU-UA- 1261 U-AC-AAG|U CUG---UGGU G-GAA-UC-U CA-UGG-C(- UU-A)A-CCA -GG-G-GGC- 1321 -UGCC-GUGG A-AAC-UGUA U-GACUU-GA GUU-----GG U-GA-GGGGA AGG-S|GGAA 1381 UA-UCUGGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UC-AGGUAG- AAGG-CCUG- 1441 -U-G-GC(-G AA-G)GCGG- -CCUUCUG-- ---------- ---------- ---------G 1501 CGC--UU-AA CUGACG-CUG AG-G------ -------CG- C-GAAA-GC- G......... 1561 .......... ...(...... ....)..... .......... .......... ..CC-CU--A 1621 AAC-G-GUGG G--CA-UU-- -------A|G -GU-GU-GGG -GU-CU---- ---------- 1681 -(-GU-AA)- ---------- ---------- ---------- -------GGG -CUCUG-UGC 1741 CG--AA---- --GG-(GAA- ---A)C-CA- UUAA-AUGCC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(ACGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-GU-UUG ACA-UG|U-- ---------U ---AGUG--- GUA----AGA 1981 -GGC-U--(- GAAA-)-GGC -U-GAUGA-- CC-------- UUGGG----- --(GU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------A A-)------- CCUGG----- ----GG---| AGC-UA-ACA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GC-C(-GUG A)-GGUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-CU-A |-UC--CUC- 2281 UG--UUGC-C CU-------- ---------- ---------- ---G(---CG ---AGG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- --------|G 2701 G-AU-CU-C- U-GAG-GA-A A-CU-G-CCA --GC(-GA-C AA)-GCU-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAU-A-UC -CA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-U-GC -UA--CAGAG GGG-G-G-C- GA-UAC-U(G 2881 -UGA)GGUG- ---------- GA-GCGAA-U CCCG--AAAA -GC-A-GUC- UCAGUUGGGA 2941 U-CGGAGUC- (UGCAAC-U- C)-GACUCCG -UGAACG-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGCAAU)-G CCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-CGAA A--GU-CUG- UU-GU-ACCC -GAA-G-UUG 3121 G-UGA-G-CU -AA-CCU--- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- GGGGGG-C-A G-CC-AA-CG A-AGGU-AUG GCC-GG-UA- AUU-GG.... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS env.PAD65 4376 bp RNA RNA 02-JUL-1998 DEFINITION unidentified soil. ACCESSION No information KEYWORDS No information. SOURCE unidentified soil. ORGANISM unidentified soil. REFERENCE 1 AUTHORS Ueda,T. TITLE Genetic diversity in soil bacteria JOURNAL Unpublished (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: D26252|g498457 library_source= unidentified soil bacterium from paddy field BASE COUNT 63 a 67 c 79 g 60 t 4107 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... ......UU-A |-UC--CUC- 2281 UG--UUAC-U C--C------ ---------- ---------- ----(---GC ---AA---)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -------G|G 2701 G-GU-CU-C- U-GAG-GA-A A-CU-G-CCG --GC(-GA-U GA)-GCU-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAU-G-UC -CA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGG-U-AC -UA--CAGAG GGU-U-G-C- AA-UAC-C(G 2881 -CAA)-GUG- ---------- GA-GCCAA-U CCCU--AAAA -GU-A-UUC- GUAGUUGGGA 2941 U-CGGAGUC- (UGCAAC-U- C)-GACUCCG -UGAACC-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGCAC-)-G CCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UU........ 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS 2.5.4-VERR 4376 bp RNA RNA 09-JAN-1999 DEFINITION 2.5.4 VERRUCOMICROBIUM_ASSEMBLAGE. ACCESSION No information KEYWORDS No information. SOURCE 2.5.4 VERRUCOMICROBIUM_ASSEMBLAGE. ORGANISM 2.5.4 VERRUCOMICROBIUM_ASSEMBLAGE. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 0 a 0 c 0 g 0 t 4376 others ORIGIN 1 x~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~-- ------~~~~ 541 ~~~~~~---- -~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~---~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- 1681 -(~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- -------~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~----~~~ 1981 ~~~~-~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~--- --~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~------ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~---~~ ---~~~--~~ 2341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- 3181 ---------- ---------- ---------- ------~)~~ ~~~~~~~~~~ ~~~~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS str.1064 4376 bp RNA RNA 02-JUL-1998 DEFINITION str. SBR1064. str. SBR1064. ACCESSION No information KEYWORDS No information. SOURCE str. SBR1064. str. SBR1064. ORGANISM str. SBR1064. REFERENCE 1 AUTHORS Bond,P.L., Hugenholtz,P., Keller,J. and Blackall,L.L. TITLE Bacterial community structures of phosphate-removing and non-phosphate-removing activated sludges from sequencing batch reactors JOURNAL Appl. Environ. Microbiol. 61 (5), 1910-1916 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X84498|g871619 isolate_name= SBR1064 BASE COUNT 103 a 91 c 130 g 79 t 3973 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... UGGC-GGC-G -UGG-CU--A AUAC-AUGCA A-GUC-GAAC 121 G--AG----G -----UG--- ---------- ---------- ---------- ---------- 181 ---------- ---------- -CUUUUG-UA (--GC----- ---------- ---------- 241 --------AA -)UA-CGAGA G--------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---UAU---- --C|-CU--- AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -GC-GUUGG- UGA--CCU-G C-CCCA---A -AGUG-U-GG 421 -AAU-AA-CA G--------- ------UC-- C(-GAAA-)G -GAUU-G--C UAAUACC-UC 481 AU-GUG---- ---------- -------G-U CA-U--C-GG ---GUU-(-- ---------U 541 AG-------- -)-AAA---C CG-GU----G AC--UAAA-- ---GCA---- ---------- 601 --(------- ---GUAA--- ---)------ ---------| ----UG--C- G--CUU---- 661 ----UGGG-- AGG---G-|G CCUGC----- -GU|----CC C--AUCA-G- CUA-G---UU 721 GG-UA-GG-( GU-AAC-GG) -C-CUACC-A A|-GGC-UA- CGA------- -----CG-GG 781 U-AG-G-GG| -A-CCU--(G -AGA)-GGGU ----GG-C-- CCC-C|C-AC -AAUGG-A-A 841 (CUGA-AA-C ACG)--GUCC -AUA-C-ACC -(UACG)--G GUG-GC-AG- C-A---GU-A 901 GGG-AAUAUU G-CUCAAU-- GG-GC-(GAA A)-GCC-UGA GGCA|-GCAA CGCC-GC-GU 961 G-U-GC-G-A U-GAA--G-G CC(--UU-CG --)GA-UCGU AAA--GCAC| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS env.PAD7 4376 bp RNA RNA 02-JUL-1998 DEFINITION unidentified soil. ACCESSION No information KEYWORDS No information. SOURCE unidentified soil. ORGANISM unidentified soil. REFERENCE 1 AUTHORS Ueda,T. TITLE Genetic diversity in soil bacteria JOURNAL Unpublished (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: D26194|g498459 library_source= unidentified soil bacterium from paddy field BASE COUNT 67 a 71 c 81 g 57 t 4100 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... ......CU-G |-UC--CUU- 2281 AG--UUCC-C AU-CA----- ---------- ---------- ---U(---UC ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AGG-GA-G A-CA-A-ACC --CU(-CU-U UG)-GGG-G- -UGGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AG GAU-G-GC-C CUUAC-G-GC -CA--GGGC- 2821 U-GCA-CA-C GUA--CUACA AUGCC-C-GG -UA--CAGAG GGA-A-G-C- AA-UAC-C(G 2881 -CGA)GGUG- ---------- GA-GCAAA-U CCUCA-AAAC -CG-G--GC- CCAGUUCAGA 2941 U-UGAAGUC- (UGCAAC-U- C)-GACUACA -UGAAGU-UG -GAAU-CGC- -UAGUA-AUG 3001 GC-GCA-(UC -AGCUAC)-G GCG-CCGUG- AAUAC-GUU- CCC-GGG-CC UU........ 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS env.PAD50 4376 bp RNA RNA 02-JUL-1998 DEFINITION unidentified soil. ACCESSION No information KEYWORDS No information. SOURCE unidentified soil. ORGANISM unidentified soil. REFERENCE 1 AUTHORS Ueda,T. TITLE Genetic diversity in soil bacteria JOURNAL Unpublished (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: D26237|g498441 library_source= unidentified soil bacterium from paddy field BASE COUNT 63 a 79 c 83 g 55 t 4096 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .......... .......... .......... .......... 421 .......... .......... .........( ......)... .......... .......... 481 .......... .......... .......... .......... ....(..... ....)..... 541 .......... .......... .......... .......... ....(..... .......... 601 .....).... .......... .|........ .......... .......... .......... 661 .......... ...|...... .......... .......... .........( .........) 721 .......... .|........ .......... .......... .........| ........(. 781 ....)..... .......... .......... .......... (......... ...)...... 841 .......... .(....)... .......... .......... .......... .......... 901 ......(... .)........ ...|...... .......... .......... .......... 961 .(........ .)........ .......... .......... .......... .......... 1021 ........(. .......... .....).... .......... ......---. .......... 1081 .......... .......... .......... .......... .......... .......(.. 1141 .......... ......)... .......|.. .......... .......... .......... 1201 .......... .......... ........|| .......... .....|.... .......... 1261 .......... ...(....). .......... .......... .......... .......... 1321 .......... .......... ........|. .......... .......... (.......). 1381 .......... .......... .......... .......... (......).. .......... 1441 .......... .......... .......... .......... .......... .......... 1501 .......... .......... .......... .......... ......(... .......).. 1561 .......... .......... .......... .......... .......... .......... 1621 |......... .......... ...(.....) .......... .......... ..-------- 1681 -(.......( ........). .......... ..-------- -------... .......... 1741 .......(.. ..)....... .......... .......... ...|...... .......... 1801 .......... .......... .......... .......... .(........ .)........ 1861 .......... .......... .......... .......... .......... .......... 1921 .......).. .......... ......|... .........( .......... ...----... 1981 .......... .......... .......... .......... .......--- --........ 2041 ........). .......... .........| .......... .......... .......... 2101 .......... ....------ .......... .........| .......... |......... 2161 .(.......) .......... .......... .......... .....|.... .......... 2221 .......... .......... .......... .......... ....--CU-G |-UG--UCC- 2281 UG--UUGCUC CCGGUUU--- ---------- ---------- ----(---AC ---CCC--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GGU|- 2701 G-CA-CU-C- U-GGA-CA-G A-CU-G-CCU --CG(-CUUA AA)-CGA-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AG GAU-G-GC-C CUUAC-G-GC -CA--GGGC- 2821 U-GCA-CA-C GUA--CUACA AUGCC-C-AG -UA--CAAAG GGC-U-G-C- GC-GGC-G(G 2881 -CAA)CGCA- ---------- GA-GCAAA-U CCUC--AAAA -CU-G-GGC- CCAGUUCAGA 2941 U-UGUCGUC- (UGCAAC-U- C)-GACGGCA -UGAAGC-CG -GAAU-CGC- -UAGUA-AUG 3001 GC-GCA-(UC -AGCUAC)-G GCG-CCGUG- AAUAC-GUU- CCA-GGG-CU UU........ 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS env.PAD18 4376 bp RNA RNA 02-JUL-1998 DEFINITION unidentified soil. ACCESSION No information KEYWORDS No information. SOURCE unidentified soil. ORGANISM unidentified soil. REFERENCE 1 AUTHORS Ueda,T. TITLE Genetic diversity in soil bacteria JOURNAL Unpublished (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: D26205|g498405 library_source= unidentified soil bacterium from paddy field BASE COUNT 65 a 80 c 87 g 51 t 4093 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .........( .......... .......... .......... 241 .........) .......... .......... .......... .......... .......... 301 .......... .......... .......... .......... .|........ .......... 361 .......... .......... .......... .......... .......... .......... 421 .......... .......... .......(.. ....)..... .......... .......... 481 .......... .......... .......... .......... ..(....... ..)....... 541 .......... .......... .......... .......... ..(....... .......... 601 ...)...... .........| .......... .......... .......... .......... 661 .......... .|........ .......... .......... .......(.. .......).. 721 .........| .......... .......... .......... .......|.. ......(... 781 ..)....... .......... .......... ........(. .......... .)........ 841 .........( ....)..... .......... .......... .......... .......... 901 ....(....) .......... .|........ .......... .......... .........( 961 .........) .......... .......... .......... .......... .......... 1021 ......(... .......... ...)...... .......... ......---. .......... 1081 .......... .......... .......... .......... .......... .....(.... 1141 .......... ....)..... .....|.... .......... .......... .......... 1201 .......... .......... ......|.|. .......... ...|...... .......... 1261 .......... .(....)... .......... .......... .......... .......... 1321 .......... .......... ......|... .......... ........(. ......)... 1381 .......... .......... .......... ........(. .....).... .......... 1441 .......... .......... .......... .......... .......... .......... 1501 .......... .......... .......... .......... ....(..... .....).... 1561 .......... .......... .......... .......... .......... ........|. 1621 .......... .......... .(.....).. .......... .......... ..-------- 1681 -(.....(.. ......)... .......... ..-------- -------... .......... 1741 .....(.... )......... .......... .......... ...|...... .......... 1801 .......... .......... .......... .........( .........) .......... 1861 .......... .......... .......... .......... .......... .......... 1921 (....).... .......... ......|... .......(.. .......... ...----... 1981 .......... .......... .......... .......... .......--- --........ 2041 ......)... .......... .......|.. .......... .......... .......... 2101 .......... ....------ .......... .......|.. .......... |........( 2161 .......).. .......... .......... .......... ...|...... .......... 2221 .......... .......... .......... .......... ..----CU-G |-UU--UCC- 2281 UG--UUGC-C AC-CCC---- ---------- ---------- ----(GGCGA GAGUCG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GGA|- 2701 G-CA-CU-C- U-GGA-CA-G A-CU-G-CCU --CG(-CUUA AA)-CGA-G- -GAGG-A-AG 2761 G-UG-GGG-G UG-ACG--UC -A-AGUC-AG UAU-G-GC-C CUUAC-G-GC -CA--GGGC- 2821 U-GCA-CA-C GUA--CUACA AUGCC-C-GG -CA--CAAAG GGA-A-G-C- GA-GAC-C(G 2881 -UCA)GUGG- ---------- AG-CAAAU-C CCCG--AAAA -CC-G-GGC- CCAGUUCAGA 2941 U-CGUCGUC- (UGCAAC-U- C)-GACGGCG -UGAAGU-UG -GAAU-CGC- -UAGUA-AUG 3001 GC-GCA-(UC -AGCUAC)-G GCG-CCGUG- AAUAC-GUU- CCC-AGG-CC UU........ 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Ver.spinos 4376 bp RNA RNA 02-JUL-1998 DEFINITION Verrucomicrobium spinosum. ACCESSION No information KEYWORDS No information. SOURCE Verrucomicrobium spinosum. ORGANISM Verrucomicrobium spinosum. REFERENCE 1 AUTHORS Albrecht,W., Fischer,A., Smida,J. and Stackebrandt,E. TITLE Verrucomicrobium spinosum, a Eubacterium representing an ancient line of desendant JOURNAL Syst. Appl. Microbiol. 10, 57-62 (1987) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X59722 (bases 1 to 228) BASE COUNT 122 a 108 c 172 g 105 t 3869 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......GU- G-UCG-C-NA C-GA--GAAG ---------A 1141 -GACGGCU-A ACUCU-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GUCU-C-A 1201 AGG-CGUAGU UC-GGAAUCA -CU-GGGC|G UAAA-GGGU- GCG-UNG-GU -G|-GC-GU- 1261 G-GA-AAG|U CGG---AUGU G-AAA-UC-C GG-GGG-C(- UC-A)A-CCU -CC-G-AAU- 1321 -UGCG-UCCG A-UAC-UCCC A-UGCU--GA GAA-----CU G-GA-GGGGG AUC-U|GGAA 1381 UU-CUCGGU- GUA-GCA(-G UGAAA)-UGC -GU-AGAU-A UC-GAGAGG- AACA-CUAG- 1441 -U-G-GC(-G AA-G)GCGA- -GAUCCUG-- ---------- ---------- ---------C 1501 AGA--GU-AU CUGACA-CUG AU-G------ -------CA- C-GAAG-G.. .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ...C)G-CG- UUAA-ACGUG C|C|G-CCU- G-GGAAGUGC 1801 GGU-C---(G CGA)---G-A UU-AAAACUC -AAA-GAAAU UG-ACGGG-G -A---CC--G 1861 C-A--CA-AG CGGUGG-AGU A-U-GU-GGC -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-GC-UUG ACN-UG|--- -------C-A ---CUGU--- -GU----CGU 1981 -CGG-U--(- GAAA-)-GCC -G-GCUA--- GU-------- --GUA----- --(GC----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------A A-)------- UA-------- ----GC---| GCU-NN-GCA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UNA. ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS env.ogram1 4376 bp RNA RNA 02-JUL-1998 DEFINITION grassland soil. ACCESSION No information KEYWORDS No information. SOURCE grassland soil. ORGANISM grassland soil. REFERENCE 1 AUTHORS Lee,S.-Y., Bollinger,J., Bezdicek,D. and Ogram,A. TITLE Enumeration by quantitative PCR of a non-culturable soil bacterium JOURNAL Unpublished (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: U51864|g1297311 legacy_attribute= Universal primers 27F and 1406R used for amplification biol_source= Palouse silt loam soil geog_source= approx. 15 mi. N of Pullman, WA library_source= grassland soil sample approx. 15 mi. N of Pullman, WA BASE COUNT 339 a 326 c 436 g 278 t 2997 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... ......U--G AAAC-AUGCA A-GUC-GAGC 121 G--AG----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ------AUUU UUUCUUG-UA (--GC----- ---------- ---------- 241 --------AA -)UA-CAGGG AAAAGU---- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-CU--- AGCG-GCGA- 361 -A-CG-GG-U GCUU---AAC -AC-GUGGG- C-AA-CCU-G C-CGUG---A -AGUG-G-GG 421 -GAU-AG-CU C--------- ------GC-- C(-GAAA-)G -GCGA-A--U UAAUACC-GC 481 AU-GUG---- ---------- -------A-U UA-GA-G--- ---AGG-(-- --------AC 541 AU-------- -)-CCU---- -UUCG---AA AU--UAAA-- ---GUCGGG- ---------- 601 --(------- ---GCAA--- ---)------ ---------| -CCUGA--C- G--CUU---- 661 ----CUUG-- UGG---G-|G CCCGC----- -GG|----CC U--AUCA-G- CUG-G---UU 721 GG-UG-AG-( GU-AAC-GG) -C-UCACC-A A|-GGC-UU- UGA------- -----CG-GG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAC ----GA-C-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-ACC -(UACG)--G GUG-GC-AG- C-A---GU-C 901 GAG-AAUUUU U-GACAAU-- GG-GG-(GAA A)-CCC-UGA UCGA|-GCGA CGCC-GC-GU 961 G-G-AG-G-A U-GAA--G-G UC(--UU-CG --)GA-UUGU AAA--CUCC| UGUC-AU-UG 1021 --GG-GAA-C AA-G-GU-GC --AUA-CGU( -----UAACU ---------) GCGU-GU-GU 1081 ---------- -------A-U U-GA-UAGU- A-CCC-G-AA G-AG--GAAG ---------G 1141 -GACGGCU-A ACUCU-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-AGAG |-GUCC-C-- 1201 AAG-CGUUGU UC-GGAUUCA -UU-GGGC|G UAAA-GGGU- GCG-UAG-GC -G|-GC-GC- 1261 G-GU-AAG|U CGG---GUGU G-AAA-UC-U CG-GAG-C(- UU-A)A-CUC -CG-A-AAC- 1321 -UGCA-UUCG A-UAC-UGCC G-UGCUU-GA GGA-----CU G-GA-GAGGA GAC-U|GGAA 1381 UU-UACGGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UC-GUAAGG- AAGA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -GUCUCUG-- ---------- ---------- ---------G 1501 ACA--GU-UC CUGACG-CUG AG-G------ -------CA- C-GAAG-GC- CA-GGG-GA- 1561 GC-AAA-CG- -GG(AUUA-G AUAC)-CCC- ----GGUA-G UC----CUG- G-CA-GU--A 1621 AAC-G-GUGC A--CG-UU-- -------U|G -GU-GU-GGG -AG-G----- ---------- 1681 -(-AU-UC)G ACC------- ---------- ---------- --------CC -UUCUG-CGC 1741 CG--GA---- --GC-(UAA- ---C)G-CG- UUAA-ACGUG C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GAAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGU A-U-GU-GGC -UCAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AGG-CC-UUG ACA-UG|--- ---------C ---AUCU--- CUA----AGU 1981 -UGG-U--(- GAAA-)-GCC -A-GCGAG-- UC-------- ---CC----- --(GA----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------A A-)------- GG-------- ----GA-CA| AUU-UG--CA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-CU-G |-UG--AAC- 2281 UG--UUGC-C AC-CGAGCC- ---------- ---------- ----(----G ---UGA--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- --GGCUCG|A 2701 G-CA-CU-C- U-GUU-CA-G A-CU-G-CCC --CG(-CUUU AA)-CGG-G- -GAGG-A-AG 2761 G-UG-GGG-A CG-ACG--UC -A-AGUC-AG UAU-G-GC-C CUUAC-G-GC -CU--GGGC- 2821 U-GCA-CA-C GUA--CUACA AUGCC-C-AG -CA--CAGAA CGA-U-C-C- GA-GAC-C(G 2881 -CAA)GGUG- ---------- GA-GGAAA-U C-ACU-AAAA -CU-G-GGC- CCAGUUCAGA 2941 U-UGAAGUC- (UGCAAC-U- C)-GACUCCA -UGAAGC-CG -GAAU-CGC- -UAGUA-AUG 3001 GC-GUA-(UC -AGCUAC)-G ACG-CCGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GU........ .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS env.FIE19 4376 bp RNA RNA 02-JUL-1998 DEFINITION unidentified soil. ACCESSION No information KEYWORDS No information. SOURCE unidentified soil. ORGANISM unidentified soil. REFERENCE 1 AUTHORS Ueda,T., Suga,Y. and Matsuguchi,T. TITLE Molecular phylogenetic analysis of a soil microbial community in a soybean field JOURNAL Eur. J. Soil Sci. 46, 415-421 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: D26269|g498387 library_source= unidentified soil bacterium from soybean field BASE COUNT 67 a 73 c 84 g 57 t 4095 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .......... (......).. .......... .......... 481 .......... .......... .......... .......... .....(.... .....).... 541 .......... .......... .......... .......... .....(.... .......... 601 ......)... .......... ..|....... .......... .......... .........| 661 .......... ....|..... .......... .......... .......... (......... 721 )......... ..|....... .......... .......... .......... |........( 781 .....).... .......... .......... .......... .(........ ....)..... 841 .......... ..(....).. .......... .......... .......... .......... 901 .......(.. ..)....... ....|..... .......... .......... .......... 961 ..(....... ..)....... .......... .......... .......... .......... 1021 .........( .......... ......)... .......... ......---. .......... 1081 .......... .......... .......... .......... .......... ........(. 1141 .......... .......).. ........|. .......... .......... .......... 1201 .......... .......... ........|. |......... ......|... .......... 1261 .......... ....(....) .......... .......... .......... .......... 1321 .......... .......... .........| .......... .......... .(.......) 1381 .......... .......... .......... .......... .(......). .......... 1441 .......... .......... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......(.. ........). 1561 .......... .......... .......... .......... .......... .......... 1621 .|........ .......... ....(..... )......... .......... ..-------- 1681 -(........ (........) .......... ..-------- -------... .......... 1741 ........(. ...)...... .......... .......... ...|...... .......... 1801 .......... .......... .......... .......... ..(....... ..)....... 1861 .......... .......... .......... .......... .......... .......... 1921 ..(.....). .......... ......|... .......... (......... ...----... 1981 .......... .......... .......... .......... .......--- --........ 2041 .........) .......... .......... |......... .......... .......... 2101 .......... ....------ .......... .......... |......... |......... 2161 ..(....... )......... .......... .......... ......|... .......... 2221 .......... .......... .......... .........( ......CU-G |-UG--AAC- 2281 UG--UUGC-C AC-UCC---- ---------- ---------- ----(CUUGA U--UGG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GAA|- 2701 G-CA-CU-C- U-GUU-CA-G A-CU-G-CCC --UG(--UGA AA)-CGG-G- -GAGG-A-AG 2761 G-UG-GGG-A CG-ACG--UC -A-AGUC-AG UAU-G-GC-C CUUAC-G-GC -CA--GGGC- 2821 U-GCA-CA-C GUA--CUACA AUGCC-C-AG -UA--CAGAA CGA-U-C-C- GA-GAC-C(G 2881 -CGA)GGUG- ---------- GA-GGAAA-U C-UAGUAAAA -CU-G-GGC- UCAGUUCGGA 2941 U-UGGAGGC- (UGCAAC-U- C)-GCCUCCA -UGAAGC-CG -GAAU-CGC- -UAGUA-AUG 3001 CC-GUA-(UC -AGCUAC)-G ACG-GCGUG- AAUAC-GUU- CCC-GGG-CC UU........ 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS 2.6-NITROS 4376 bp RNA RNA 09-JAN-1999 DEFINITION 2.6 NITROSPINA_SUBDIVISION. ACCESSION No information KEYWORDS No information. SOURCE 2.6 NITROSPINA_SUBDIVISION. ORGANISM 2.6 NITROSPINA_SUBDIVISION. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 0 a 0 c 0 g 0 t 4376 others ORIGIN 1 x~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~-- ------~~~~ 541 ~~~~~~---- -~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~---~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- 1681 -(~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- -------~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~----~~~ 1981 ~~~~-~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~--- --~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~------ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~---~~ ---~~~--~~ 2341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- 3181 ---------- ---------- ---------- ------~)~~ ~~~~~~~~~~ ~~~~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS 2.6.1-HP.F 4376 bp RNA RNA 09-JAN-1999 DEFINITION 2.6.1 HP.FOETIDA_ASSEMBLAGE. ACCESSION No information KEYWORDS No information. SOURCE 2.6.1 HP.FOETIDA_ASSEMBLAGE. ORGANISM 2.6.1 HP.FOETIDA_ASSEMBLAGE. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 0 a 0 c 0 g 0 t 4376 others ORIGIN 1 x~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~-- ------~~~~ 541 ~~~~~~---- -~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~---~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- 1681 -(~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- -------~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~----~~~ 1981 ~~~~-~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~--- --~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~------ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~---~~ ---~~~--~~ 2341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- 3181 ---------- ---------- ---------- ------~)~~ ~~~~~~~~~~ ~~~~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS env.A39 4376 bp RNA RNA 02-JUL-1998 DEFINITION clone A39.. ACCESSION No information KEYWORDS No information. SOURCE clone A39. ORGANISM clone A39. REFERENCE 1 AUTHORS Devereux,R. and Mundfrom,G. TITLE A phylogenetic tree of 16S rRNA sequences from sulfate-reducing bacteria in a sandy marine sediment JOURNAL Appl. Environ. Microbiol. 60, 3437-3439 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: U08392|g475612 BASE COUNT 100 a 107 c 154 g 80 t 3935 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... .......... 901 .......... .......... ......(... .)..CC-UGA CGCA|-GCGA CGCC-GC-GU 961 G-G-GG-G-A U-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--CCCC| UGUC-AG-GU 1021 --GG-GAA-- GA-------- ---------( ---------- ---------) ---------- 1081 ---------- ---------- ---A-CGGU- C-UGU-CGGC G-AA--UAAC .......... 1141 .......... .........( .......... .........) .......... |....G-C-- 1201 AAG-CGUUGU UC-GGAUUUA -CU-GGGC|G UAAA-GCGC- ACG-UAG-GC -G|-GC-AU- 1261 G-GC-AAG|U CAA---AGGU G-AAA-GC-C CU-CAG-C(- UC-A)A-CUG -AG-G-AAC- 1321 -UGCC-UUUG A-AAC-UGCC C-UGCUU-GA GUC-----CG G-GA-GGGGG GAG-C|GGAA 1381 UU-CCCAGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A CU-GGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CUCCCUG-- ---------- ---------- ---------G 1501 ACC--GG-CA CUGACG-CUG AG-G------ -------UG- C-GAAA-GC- GU-GGG-UA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGG G--CA-CU-- -------A|G -GU-GU-AGC -GG-GU---- ---------- 1681 -(GUC-GA)C ---------- ---------- ---------- -------CCC -UGCUG-UGC 1741 CG--AA---- --GC-(UAA- ---C)G-CA- UUAA-GUGCC C|C|G-CCU- G-GGGAGUAC 1801 GGU.....(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS env.A40 4376 bp RNA RNA 02-JUL-1998 DEFINITION clone A40.. ACCESSION No information KEYWORDS No information. SOURCE clone A40. ORGANISM clone A40. REFERENCE 1 AUTHORS Devereux,R. and Mundfrom,G. TITLE A phylogenetic tree of 16S rRNA sequences from sulfate-reducing bacteria in a sandy marine sediment JOURNAL Appl. Environ. Microbiol. 60, 3437-3439 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: U08393|g475613 BASE COUNT 105 a 113 c 157 g 82 t 3919 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... .......... 901 .......... .......... ......(... .)..CC-UGA CGCA|-GCGA CGCC-GC-GU 961 G-G-GG-G-A U-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--CCCC| UGUC-AG-GU 1021 --GG-GAA-- GA---AC-GG -UCUG-UCG( G---CGAAUA A----C---) UGGC-AG-UC 1081 ---------- -------C-U U-GA-CGGU- A-CCA-C-CA A......... .......... 1141 .......... .........( .......... .........) .......... |......C-- 1201 AAG-CGUUGU UC-GGAAUUA -CU-GGGC|G UAAA-GCGC- GCG-UAG-GC -G|-GC-AU- 1261 G-GC-AAG|U CAA---AGGU G-AAA-GC-C CU-CAG-C(- UC-A)A-CUG -AG-G-AAC- 1321 -UGCC-UUUG A-AAC-UGCC C-UGCUU-GA GUC-----CG G-GA-GGGGG GAG-C|GGAA 1381 UU-CCCAGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A CU-GGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -NUCCCUG-- ---------- ---------- ---------G 1501 ACC--GG-CA CUGACG-CUG AG-G------ -------UG- C-GAAA-GC- GU-GGG-UA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGG G--CA-CU-- -------A|G -GU-GU-AGC -GG-GU---- ---------- 1681 -(GUC-GA)C ---------- ---------- ---------- -------CCC -UGCUG-UGC 1741 CG--AA---- --CG-(UAA- ---C)G-CA- UUAA-GUGCC C|C|G-CCU- G-GGGA.... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS env.PVB36 4376 bp RNA RNA 02-JUL-1998 DEFINITION Pele's Vents. ACCESSION No information KEYWORDS No information. SOURCE Pele's Vents. ORGANISM Pele's Vents. REFERENCE 1 AUTHORS Moyer,C.L., Dobbs,F.C. and Karl,D.M. TITLE Phylogenetic diversity of the bacterial community from a microbial mat at an active, hydrothermal vent system, Loihi Seamount, Hawaii JOURNAL Appl. Environ. Microbiol. 61, 1555-1562 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: U15118|g710324 library_source= Pele's Vents Bacterium DNA BASE COUNT 224 a 239 c 359 g 185 t 3369 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .....UU--- AGAC-AUGCA A-GUC-GAGC 121 G--GU-AA-G ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ----GCC-CC (--UU----- ---------- ---------- 241 --------CG -)GG-GGU-- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------A- --C|-AC--G AGCG-GCGA- 361 -A-CG-GG-U GAGU---AAC -GC-GUGGG- U-AA-CCU-A C-CCAA---A -AGUG-G-GG 421 -GAU-AG-CU C--------- ------CG-- G(-GAAA-)C -CGGG-G--G UAAUACC-GC 481 AU-GUG---- ---------- -------U-C CC-A--A-CC ---GGC-(-- --------GC 541 AG-------- -)-GCU---G GU-UG----G GA--GAAA-- ---GAUGGG- GA--UCC--- 601 --(------- ---UUCG--- ---)------ ----GGA--| -CCUGU--C- G--CUU---- 661 ----UUGG-- AUG---G-|G CCCGC----- -GU|----CC G--AUUA-G- CUU-G---UU 721 GG-UG-GG-( GU-AAU-GG) -C-CUACC-A A|-GGC-UG- CGA------- -----UC-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGU ----GA-U-- CGG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUUUU G-GGCAAU-- GG-GC-(GCA A)-GCC-UGA CCCA|-GCGA CGCC-GC-GU 961 G-G-GG-G-A U-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--CCCC| UGUC-AG-AU 1021 --GG-GAA-- GA-A-GG-CC --UUG-UUG( G----UUAAU AG---C---) CUUC-GA-GG 1081 ---------- -------U-U U-GA-CGGU- A-CCA-U-CA A-AG--GAAG ---------C 1141 -CCCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGGG-C-- 1201 AAG-CGUUGU UC-GGAUUUA -CU-GGGC|G UAAA-GCGC- ACG-UAG-GC -G|-GC-AG- 1261 G-GU-AAG|U CAA---AGGU G-AAA-GC-C CU-CGG-C(- UC-A)A-CCG -AG-G-AAC- 1321 -UGCC-UUUG A-AAC-UGCU C-UGCUU-GA GUC-----CG G-GA-GGGGG GAG-C|GGAA 1381 UU-CCCAGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A CU-GGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -CUCCCUG-- ---------- ---------- ---------G 1501 ACC--GG-UA CUGACG-CUG AG-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGG G--CA-CU-- -------A|G -GU-GU-AGC -GG-GUG--- ---------- 1681 -(-UC-GA)- ---------- ---------- -C-------- -------CCC -UGCUG-UGC 1741 CG--AA---- --GC-(UAA- ---C)G-CA- UUAA-GUGCC C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-G CU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C G)--CGAGGA 1921 A-CCUUA-CC UGG-GU-UUG ACA-UU|--- ---------G ---AGAGA-- --A----CCU 1981 -GCC-A--(- GAGA-)-UGG -C-GGGGU-- GC-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----G----| AAC-UC.... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS env.OS_K 4376 bp RNA RNA 02-JUL-1998 DEFINITION Octopus Spring. ACCESSION No information KEYWORDS No information. SOURCE Octopus Spring. ORGANISM Octopus Spring. REFERENCE 1 AUTHORS Weller,R., Bateson,M.M., Heimbuch,B.K., Kopczynski,E.D. and Ward,D. TITLE Uncultivated cyanobacteria, Chloroflexus-like and Spirochete-like inhabitants of a hot spring microbial mat JOURNAL Appl. Environ. Microbiol. 58, 3964-3969 (1992) STANDARD No information REFERENCE 2 AUTHORS Ward,D.M., Bateson,M.M., Weller,R. and Ruff-Roberts,A.L. TITLE Ribosomal RNA analysis of microorganisms as they occur in nature JOURNAL Adv. Microb. Ecol. 12, 219-286 (1992) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: L04711 library_source= Octopus Spring microbial mat DNA from Yellowstone NP NB: IDENT:periph. relat. C.thmaceti group BASE COUNT 302 a 349 c 458 g 243 t 3024 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 ..UCAG-AAU -GAAC-GC-- UGGC-GGC-G -UGC-CU--A ACAC-AUGCA A-GUC-UAUC 121 G--CG----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- AGGCCCG-GU (--GC----- ---------- ---------- 241 --------AA -)CC-CGCGA GU-------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-CG--- AGCG-GYGA- 361 -A-CG-GG-U GAGU---AAC -GC-GUGGG- UAA--CCU-A C-CCAG---G -AGAG-G-GG 421 -GAU-AG-CC C--------- ------CG-- C(-GAAA-)G -UGGG-G--G UAAUACN-G- 481 -U-ACG---- ---------- -------C-U CU-C--C-GG ---UGC-(-- --------AC 541 AA-------- -)-GCG---C CG-GA----G AG--GAAA-- ---GGUGGG- NN--UCUUC- 601 --(------- ---UUCG--- ---)------ --G-GGN--| -CCUGC--C- G--CUC---- 661 ----CUGG-- AUG---G-|G CCCN------ -GU|-----C C--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAC-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----UC-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGU ----GA-C-- CGG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GGCAAU-- GG-GC-(GAA A)-GCC-UGA CCCA|-GCGA CGCC-GC-GU 961 G-A-GG-G-A U-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--CCUC| UGUC-AG-GG 1021 --GG-NAC-- GA-ACGC-GU --CCC-GGU( -----GAACA ---------) GCCG-GYGYG 1081 ---------- -------U-C U-GA-CGGU- A-CCU-C-CA A-AG--GAAG ---------C 1141 -CCCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGGG-N-- 1201 GAG-CGUUAU UC-GGAAUUA -CU-GGGC|G UAAA-GYGY- GYG-CAG-GU -G|-GC-UG- 1261 G-GU-AAG|U GGC---AGGU G-AAA-UC-C CU-UGG-C(- UC-A)A-CCG -AG-G-AAC- 1321 -UGCC-UGCC A-AAC-UGCU C-UGCUU-GA GGC-----CG G-GA-GGGGG UAA-C|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A CC-AGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -CUUCCUG-- ---------- ---------- ---------G 1501 ACC--GG-UU AUGACA-CUC AU-G------ -------CG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-CU--A 1621 AAC-G-AUGG G--CA-CU-- -------A|G -GC-GU-CGC -GG-GUG--- ---------- 1681 -(-UC-GA)- ---------- ---------- -C-------- -------CCC -UGCNG-UGC 1741 CG--UA---- --GC-(UAA- ---C)G-CG- UUAA-GUGCC C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-G CU-GAAACUC -AAA-GGAAU UG-ACNGG-G -G-C-CC--G 1861 C-A--CA-AG C-GUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-GU-UUG AAC-UG|--- ---------C ---UGGGG-- -AC----CGU 1981 -UCU-G--(- GAGA-)-CAG -A-AUCU--- UC-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----GA--C| UCC-AG-CAG |----|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GC-C(-GUG A)-GGUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--RC AACCC-UU-N |-CC--CCU- 2281 AG--UUGC-C AR-CRG---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CCG|G 2701 G-GA-CU-C- U-AGG-GG-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AN 2761 N-NN-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-GC-C UUUAU-G-UC -CA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGU-C-GG -UA--CAAAG GGC-U-G-C- AA-ACC-C(G 2881 -CGA)N-GG- ---------- GA-GCUAA-U CCCAA-AAAG -CC-N-NCC- UCAGUUCGGA 2941 U-UGCAGUC- (UGCAAC-U- C)-GACUGCA -UGAAGG-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-GUA-(UC -AGA-AC)-G ACN-CGGUG- AAUAC-GUU- CCC-NNN-CC UUG....... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS str.s18 4376 bp RNA RNA 02-JUL-1998 DEFINITION str. s18. str. s18. ACCESSION No information KEYWORDS No information. SOURCE str. s18. str. s18. ORGANISM str. s18. REFERENCE 1 AUTHORS Pedersen,K. and Hallbeck,L. TITLE Investigation of the microbial populations in boreholes and drilling equipment used in the SELECT program JOURNAL Unpublished (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: Z69322|g1181104 isolate_name= s18 BASE COUNT 103 a 76 c 96 g 76 t 4025 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) ......AGAG |-ACCU-C-- 1201 AAG-CGUUAU CC-GGAUUCA -UU-GGGC|G UAAA-GCGU- CCG-CAG-GU -U|-GU-UA- 1261 U-AU-AAG|U UAG---UGGU U-AAA-UC-C UU-CGG-C(- UU-A)A-CCG -AA-G-AAC- 1321 -UGCC-ACUA A-AAC-UGCA U-GACUA-GA GGC-----UG G-GA-GAGGC AAA-C|GGAA 1381 CU-GCAGGU- GUA-GUA(-G UAAAA)-UGC -GU-UGAU-A UC-UGCAGG- AACA-CCAA- 1441 -A-G-GC(-G AA-G)GCAG- -UUUGCUG-- ---------- ---------- ---------G 1501 AAC--AG-UC CUGACA-CUC AU-G------ -------GA- C-GAAA-GC- GU-GGG-UA- 1561 GC-GAA-AG- -GG(AUUA-G AUAC)-CCC- ----UGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGU G--CA-CU-- -------A|G -GU-AU-UGC -GA-G----- -U-------- 1681 -(AUC-GA)C C--------- ---------- ---------- --------CU -CGCAG-UGC 1741 CG--UUCAAA AAAC-(UAA- ---C)G-CG- UUAA-GUGCA C|C|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS env.A8 4376 bp RNA RNA 02-JUL-1998 DEFINITION gram-negative anaerobic. ACCESSION No information KEYWORDS No information. SOURCE gram-negative anaerobic. ORGANISM gram-negative anaerobic. REFERENCE 1 AUTHORS Devereux,R. and Mundfrom,G.W. TITLE A phylogenetic tree of 16S rRNA sequences from sulfate-reducing bacteria in a sandy marine sediment JOURNAL Appl. Environ. Microbiol. 60, 3437-3439 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: U08397|g475617 library_source= gram-negative anaerobic sulfate-reducing bacterium BASE COUNT 113 a 112 c 163 g 93 t 3895 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... .......... 901 .......... .......... ......(... .)..CC-UGA CGCA|-GCGA CGCC-GC-GU 961 G-A-GU-G-A U-GAA--G-G CU(--UU-CG --)GG-UCGU AAA--GCUC| UGUC-AA-GU 1021 --GG-GAA-- GA-A-CC-UG --UAA-AGU( G---CCAAUA C----C---) A......... 1081 .......... .......... .......... .......... .......... .......... 1141 ......CU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGUG-C-- 1201 GAG-CGUUAU UC-GGAAUUA -CU-GGGC|G UAAA-GGGC- GCG-UAG-GC -G|-GC-CU- 1261 G-AU-AAG|U CGA---AAGU G-AAA-UC-C CU-CGG-C(- UC-A)A-CCG -AG-G-AAC- 1321 -UGCU-UUCG A-AAC-UGUC U-GGCUA-GA GAA-----UG G-GA-GGGGG CAG-U|GGAA 1381 UU-CCCGGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UC-GGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CUGCCUG-- ---------- ---------- ---------G 1501 ACC--AU-UU CUGACG-CUG AG-G------ -------CG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CU-GU--A 1621 AAC-G-AUGG G--CA-CU-- -------C|G -AU-GC-CGC -GG-G----- -U-------- 1681 -(AUU-GA)C C--------- ---------- ---------- --------CC -UGCGG-UGU 1741 CU--UA---- --GU-(UAA- ---C)G-CG- AUAA-GUGCC C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Hp.foetida 4376 bp RNA RNA 02-JUL-1998 DEFINITION Holophaga foetida str. TMBS4 DSM 6591 (T). ACCESSION No information KEYWORDS No information. SOURCE Holophaga foetida str. TMBS4 DSM 6591 (T). ORGANISM Holophaga foetida. REFERENCE 1 AUTHORS Liesack,W., Bak,F., Kreft,J.U. and Stackebrandt,E. TITLE Holophaga foetida gen. nov., sp. nov., a new, homoacetogenic bacterium degrading methyloxylated aromatic compounds JOURNAL Arch. Microbiol. 162, 85-90 (1994) STANDARD No information COMMENTS Organism information Culture collection: DSM 6591 (T) Sequence information (bases 1 to 4376) Corresponding GenBank entry: X77215|g534921 isolate_name= TMBS4 BASE COUNT 362 a 336 c 498 g 304 t 2876 others ORIGIN 1 .......... .......... .......... .......... .GAGUU(U-G A)U-CCU|-G 61 GCUCAG-AAU -GAAC-NC-- UGGC-GGC-G -UGC-CU--A ACAC-AUGCA A-GUC-GGAU 121 G--UG----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ------C-CC (--GC----- ---------- ---------- 241 --------AA -)GG------ ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UG--- CAUG-GCAG- 361 -A-CG-GG-U GAGU---AAC -GC-GUAGG- AGA--CCU-A C-CUUU---U -UGUG-G-GG 421 -AAU-AA-CG U--------- ------UC-- C(-GAAA-)G -GGAC-G--A UAAUACC-GC 481 AU-GAG---- ---------- -------A-C CA-C------ ---AGG-(-- ------AUUG 541 GA-UG----- -)-CCU---- ---GU----G GU--GAAA-- ---GCCGGG- GA--CC---- 601 --(------- ---GUAA--- ---)------ -----GG--| -CCUGG--C- G--CAA---- 661 ----GAAG-- AGG---G-|U CCUGC----- -GU|----CU G--AUUA-G- CUA-G---UU 721 GG-CG-GG-( GU-AAC-GG) -C-CCACC-A A|-GGC-GA- CGA------- -----UC-AG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGU ----GA-U-- CGG-C|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUUUU G-CGCAAU-- GG-GC-(GAA A)-GCC-UGA CGCA|-GCAA CGCC-GC-GU 961 G-G-GU-G-A U-GAA--G-G UC(--UU-CG --)GA-UUGU AAA--ACCC| UGUC-GU-CA 1021 --GG-GAC-- GA-AGGC-AU --GGG-AUU( -----GAAUA ---------) UUUC-CU-AU 1081 ---------- ------GC-U U-GA-CGGU- A-CCU-G-GA G-AG--GAAG ---------C 1141 -CCCGGCU-A ACUCU-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-AGAG |-GGGG-C-- 1201 AAG-CGUUAU UC-GGAAUUA -U-UGGGC|G UAAA-GGGC- GCG-UAGGCG -G|-UU-CU- 1261 U--U-AAG|U GAG---AUGU G-CAA-UC-C CC-GGG-C(- UC-A)A-CCU -GG-G-AAC- 1321 -UGCA-UCUC A-UAC-UGGA G-AGCUA-GA GUG-----CU G-GA-GAGGG UGG-U|AGAA 1381 UU-CCACGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UG-UGGAGG- AAUA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CCACCUG-- ---------- ---------- ---------G 1501 ACA--GU-AA CUGACG-CUG AG-G------ -------CG- C-GAAA-GU- GU-GGG-UA- 1561 GC-AAA-CA- -GG(AU-UAG AUAC)-CCU- ----GGUA-G UC----CAC- G-CU-GU--A 1621 AAC-G-AUGA A--CA-CU-- -------U|G -GU-GU-GGU -GG-GA---- ---------- 1681 -(GUU-GA)C ---------- ---------- ---------- -------CCC -UGCCG-UGC 1741 CG--GA---- --GC-(UAA- ---C)G-CG- UUAA-GUGUU C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-G CU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(ACGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-GC-UUG AAC-UG|--- ---------U ---AAUGG-- -AC----CGG 1981 -UGC-A--(- GAGA-)-UGU -G-CCUU--- UU-------- ----C----- --(GC----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------A A-)------- G--------- ----AA--C| UGU-UA--CA |---G|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-A |-CC--CUU- 2281 AG--UUGC-C AG-CGC---- ---------- ---------- ---G(---UA ---AAG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GCG|G 2701 G-AA-CU-C- U-AAG-GG-G A-CU-G-CCG --GG(--U-U AA)-CCG-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-AUG--UC -A-AGUC-CU CAU-G-GC-C CUUAU-G-UC -CA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGG-C-GA -UA--CAAAC CGU-G-C-C- GA-GGC-C(G 2881 -CGA)GGUG- ---------- GA-GCUAA-U CGGAG-AAAG -UC-G-CCC- UCAGUUCGGA 2941 U-UGUAGUC- (UGCAAC-U- C)-GACUACA -UGAAGG-UG -GAAU-CGC- -UAGUA-AUC 3001 GU-GUA-(UC -AGA-AU)-G AUA-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --UCA-CGAA A--GC-CGG- GA-GC-ACUU -GAA-G-AGG 3121 C-UGU-G-GU -AA-CCC--- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGGGG-C-U A-GG-UU-UC A-AUGGUGAA CUU-GG-UG- AUU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAUCC-G... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Gt.ferment 4376 bp RNA RNA 02-JUL-1998 DEFINITION "Geothrix fermentans".. ACCESSION No information KEYWORDS No information. SOURCE "Geothrix fermentans". ORGANISM "Geothrix fermentans". REFERENCE 1 AUTHORS Lonergan,D.J., Jenter,H.L., Coates,J.D., Phillips,E.J.P., Schmidt,T.M. and Lovley,D.R. TITLE Phylogenetic analysis of dissimilatory Fe(III)-reducing bacteria JOURNAL J. Bacteriol. 178, 2402-2408 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: U41563|g1136552 BASE COUNT 346 a 329 c 483 g 289 t 2929 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .........U -GAAC-GC-- UGGC-GGC-G -UGC-CU--A ACAC-AUGCA A-GUC-GGAU 121 G--UG----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --------CC (--GC----- ---------- ---------- 241 --------AA -)GG------ ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UG--- CAUG-GCAG- 361 -A-CG-GG-U GAGU---AAC -GC-GUGGG- GAA--UCU-A C-CUCU---U -UGUG-G-GG 421 -AAU-AA-CG C--------- ------UC-- C(-GAAA-)G -GAGU-G--G UAAUACC-GC 481 AU-GAG---- ---------- -------A-C CU-U------ ---CGG-(-- ------CUGG 541 GA-UG----- -)-CUG---- ---GA----G GU--GAAA-- ---CCUGGG- GA--CC---- 601 --(------- ---GCAA--- ---)------ -----GG--| -CCUGG--G- G--CAA---- 661 ----GGAG-- AGG---A-|U CCUGC----- -GU|----CU G--AUUA-G- CUA-G---UU 721 GG-CG-GG-( GU-AAU-GG) -C-CCACC-A A|-GGC-GA- CGA------- -----UC-AG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGU ----GA-U-- CGG-C|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUUUU G-CGCAAU-- GG-AC-(GAG A)-GUC-UGA CGCA|-GCAA CSCC-GC-GU 961 G-G-GU-G-A U-GAA--G-G UC(--UU-CG --)GA-CUGU AAA--ACCC| UGUC-GU-CA 1021 --GG-GAC-- GA-AGGU-GG --CAC-GAC( -----UAAUA ---------) AUCG-UG-UU 1081 ---------- ------AC-U U-GA-CGGU- A-CCU-G-GA G-AG--GAAG ---------C 1141 -CCCGGCU-A ACUCU-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-AGAG |-GGGG-C-- 1201 AAG-CGUUAU UC-GGAAUUA -U-UGGGC|G UAAA-GGGC- GCG-UAGGCG -G|-UU-UU- 1261 U--U-AAG|U CAG---AUGU G-UAA-UC-C CC-GAG-C(- UC-A)A-CUU -GG-G-AAC- 1321 -UGCA-UCUG A-GAC-UGGA A-GGCUA-GA GUA-----CU G-GA-GAGGG UGG-U|GGAA 1381 UU-CCUCGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UG-AGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CCACCUG-- ---------- ---------- ---------G 1501 ACA--GU-AA CUGACG-CUG AG-G------ -------CG- C-GAAA-GU- GU-GGG-UA- 1561 GC-AAA-CA- -GG(AU-UAG AUAC)-CCU- ----GGUA-G UC----CAC- G-CU-GU--A 1621 AAC-G-AUGA A--CA-CU-- -------U|G -GU-GU-GGA -GG-GA---- ---------- 1681 -(GUU-GA)C ---------- ---------- ---------- -------CCC -UUCCG-UGC 1741 CG--GA---- --GC-(UAA- ---C)G-CG- UUAA-GUGUU C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-G CU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(ACGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-GC-UUG AAC-UG|--- ---------C ---AGUGG-- -AC----CGG 1981 -UGC-A--(- GAGA-)-UGU -G-CCUU--- UU-------- ----C----- --(GC----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------A A-)------- G--------- ----AA--C| UGC-UG--CA |---G|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-A |-CC--CGU- 2281 AG--UUGC-C AG-CGC---- ---------- ---------- ---G(---UC ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GCG|G 2701 G-AA-CU-C- U-ACG-GG-G A-CU-GCCCG --GG(--U-U AA)-CCG-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-AUG--UC -A-AGUC-CU CAU-G-GC-C CUUAU-G-UC -CA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGG-C-GA -UA--CAAAC CGU-U-G-C- AA-AGU-C(G 2881 -CGA)GAUG- ---------- GA-GCUAA-U CGGAG-AAAG -UC-G-UCC- UCAGUUCGGA 2941 U-UGUAGUC- (UGCAAC-C- C)-GACUACA -UGAAGG-UG -GAAU-CGC- -UAGUA-AUC 3001 GU-GUA-(UC -AGA-AU)-G AUA-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --UCA-CGAA A--GC-CGG- GA-GC-ACUU -GAA-G-AGG 3121 C-UGU-G-GU -AA-CCC--- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGGGG-C-U A-GG-UC-UC A-AUGGUGAA CUU-G..... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS 2.6.2-ENV 4376 bp RNA RNA 09-JAN-1999 DEFINITION 2.6.2 ENV.FIE12_GROUP. ACCESSION No information KEYWORDS No information. SOURCE 2.6.2 ENV.FIE12_GROUP. ORGANISM 2.6.2 ENV.FIE12_GROUP. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 0 a 0 c 0 g 0 t 4376 others ORIGIN 1 x~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~-- ------~~~~ 541 ~~~~~~---- -~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~---~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- 1681 -(~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- -------~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~----~~~ 1981 ~~~~-~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~--- --~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~------ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~---~~ ---~~~--~~ 2341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- 3181 ---------- ---------- ---------- ------~)~~ ~~~~~~~~~~ ~~~~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS env.FIE12 4376 bp RNA RNA 02-JUL-1998 DEFINITION unidentified soil. ACCESSION No information KEYWORDS No information. SOURCE unidentified soil. ORGANISM unidentified soil. REFERENCE 1 AUTHORS Ueda,T., Suga,Y. and Matsuguchi,T. TITLE Molecular phylogenetic analysis of a soil microbial community in a soybean field JOURNAL Eur. J. Soil Sci. 46, 415-421 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: D26264|g498382 library_source= unidentified soil bacterium from soybean field BASE COUNT 71 a 72 c 75 g 60 t 4098 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... ......UU-G |-UC--CUU- 2281 AG--UUGC-U AC-CGG---- ---------- ---------- ---A(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CCG|G 2701 G-CA-CU-C- U-AAG-GA-G A-CU-G-CCU --AC(-GC-A AG)-UAG-U- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-CG CAU-G-GC-C CUUAC-G-CC -CA--GGGC- 2821 C-ACA-CA-C GUG--CUACA AUGGC-U-AC -UA--CAAAG AGC-U-G-C- UA-AAC-C(G 2881 -CAA)GGUC- ---------- AU-GCCAA-U CUCUA-AAAA -GU-A-GUC- UCAGUUCGGA 2941 U-UGGAGUC- (UGAAAC-U- C)-GACUCCA -UGAAGC-UG -GAAU-UGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AC)-G CCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UU........ 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS env.PAD8 4376 bp RNA RNA 02-JUL-1998 DEFINITION unidentified soil. ACCESSION No information KEYWORDS No information. SOURCE unidentified soil. ORGANISM unidentified soil. REFERENCE 1 AUTHORS Ueda,T. TITLE Genetic diversity in soil bacteria JOURNAL Unpublished (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: D26195|g498460 library_source= unidentified soil bacterium from paddy field BASE COUNT 68 a 73 c 79 g 57 t 4099 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... ......UU-C |-UC--UGU- 2281 AG--UUGC-C AG-CAG---- ---------- ---------- ---G(---UU ---ACG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CUG|G 2701 G-CA-CU-C- U-ACA-GA-G A-CU-G-C-G --GU(-GA-C AA)-GCC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-CU CAU-G-GC-C CUUAC-A-UC -CA--GGGC- 2821 U-ACA-CA-C GUA--CUACA AUGGC-C-GG -UA--CAGAA GGU-U-G-C- AA-GAC-C(G 2881 -CAA)GGUU- ---------- GA-GCUAA-U CCCCA-AAAC -CC-G-GCC- UCAGUUCAGA 2941 U-UGGAGUC- (UGCAAC-U- C)-GACUCCA -UGAAGG-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-UGA-(UC -AGC-AG)-G CAG-CGGUG- AAUAC-GUU- CCC-GGG-CC UU........ 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS env.PAD1 4376 bp RNA RNA 02-JUL-1998 DEFINITION unidentified soil. ACCESSION No information KEYWORDS No information. SOURCE unidentified soil. ORGANISM unidentified soil. REFERENCE 1 AUTHORS Ueda,T. TITLE Genetic diversity in soil bacteria JOURNAL Unpublished (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: D26188|g498396 library_source= unidentified soil bacterium from paddy field BASE COUNT 75 a 68 c 77 g 58 t 4098 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... ......CU-G |-UC--UUU- 2281 AG--UUGC-U AA-CAG---- ---------- ---------- ---G(---UC ---AAG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CUG|A 2701 G-CA-CU-C- U-AAA-GA-G A-CU-G-CCG --GU(-GA-A AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-CU CAU-G-GC-C UUUAU-G-UC -CA--GGGC- 2821 U-ACA-CA-C GUA--CUACA AUGGC-C-GG -UA--CAAAG AGU-C-G-C- AA-ACC-C(G 2881 -CGA)GGGG- ---------- GA-GCCAA-U CUCAA-AAAG -CC-G-GUC- UCAGUUCGGA 2941 U-UGGAGUC- (UGCAAC-U- C)-GACUCCA -UGAAGC-UG -GAAU-CGC- -UAGUA-AUC 3001 AC-UGA-(UC -AGC-AA)-G CAG-UGGUG- AAUAC-GUU- CCC-GGG-CC UU........ 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS env.PAD14 4376 bp RNA RNA 02-JUL-1998 DEFINITION unidentified soil. ACCESSION No information KEYWORDS No information. SOURCE unidentified soil. ORGANISM unidentified soil. REFERENCE 1 AUTHORS Ueda,T. TITLE Genetic diversity in soil bacteria JOURNAL Unpublished (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: D26201|g498401 library_source= unidentified soil bacterium from paddy field BASE COUNT 65 a 69 c 83 g 61 t 4098 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... ......UU-C |-UC--CUU- 2281 AG--UUGC-U AA-CGG---- ---------- ---------- ---G(---UG ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CUG|A 2701 G-CA-CU-C- U-AAG-GA-G A-CU-C-CCG --GU(-GA-U AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-CU CAU-G-GC-C CUUAC-G-UC -UG--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-C-GG -UA--CAGAG GGU-U-C-C- GA-UAC-C(G 2881 -CGA)GGUG- ---------- GA-GGCAA-U CCCAA-AAAA -CU-G-GUC- UCAGUUCGGA 2941 U-UGCAGUC- (UGCAAC-U- C)-GACUGCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-UGA-(UC -AGC-AG)-G CAG-CGGUG- AAUAC-GUU- CCC-GGG-CC UU........ 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS env.PAD39 4376 bp RNA RNA 02-JUL-1998 DEFINITION unidentified soil. ACCESSION No information KEYWORDS No information. SOURCE unidentified soil. ORGANISM unidentified soil. REFERENCE 1 AUTHORS Ueda,T. TITLE Genetic diversity in soil bacteria JOURNAL Unpublished (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: D26226|g498428 library_source= unidentified soil bacterium from paddy field BASE COUNT 68 a 73 c 80 g 57 t 4098 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... ......UU-G |-CC--CUU- 2281 AG--UUGC-U AA-CAG---- ---------- ---------- ---G(---UU ---AAG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CUG|A 2701 G-CA-CC-C- U-AAG-GG-A A-CU-G-UCG --GC(-GA-A AA)-GCC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-CU CAU-G-GC-C CUUAC-G-UC -CC--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGU-C-GG -UA--CAAAG GGU-U-G-C- CA-ACC-C(G 2881 -CGA)GGGG- ---------- GA-GCUAA-U CCCAA-AAAC -CC-G-AUC- CCAGUUCGGA 2941 U-UGCAGUC- (UGCAAC-U- C)-GACUGCA -UGAAGU-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGC-AU)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UU........ 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS env.PAD55 4376 bp RNA RNA 02-JUL-1998 DEFINITION unidentified soil. ACCESSION No information KEYWORDS No information. SOURCE unidentified soil. ORGANISM unidentified soil. REFERENCE 1 AUTHORS Ueda,T. TITLE Genetic diversity in soil bacteria JOURNAL Unpublished (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: D26242|g498446 library_source= unidentified soil bacterium from paddy field BASE COUNT 68 a 70 c 82 g 58 t 4098 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... ......UU-G |-CC--UCC- 2281 UG--UUGC-U AA-CAG---- ---------- ---------- ---A(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CUG|A 2701 G-CA-CU-C- U-GGA-GG-A A-CU-G-CCG --GC(-GA-U AA)-GCG-G- -AAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-CU CAU-G-GC-C UUUAU-G-CC -CC--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-U-GG -UA--CAAAG GGU-U-G-C- AA-AAC-C(G 2881 -CGA)GGUG- ---------- GA-GCUAA-U CCCAG-AAAG -CC-A-GUC- CCAGUUCGGA 2941 U-UGCAGUC- (UGCAAC-U- C)-GACUGCA -UGAAGU-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AC)-G ACG-CGGUG- AAUAC-GUU- CCC-GGG-CC UU........ 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS env.FIE13 4376 bp RNA RNA 02-JUL-1998 DEFINITION unidentified soil. ACCESSION No information KEYWORDS No information. SOURCE unidentified soil. ORGANISM unidentified soil. REFERENCE 1 AUTHORS Ueda,T., Suga,Y. and Matsuguchi,T. TITLE Molecular phylogenetic analysis of a soil microbial community in a soybean field JOURNAL Eur. J. Soil Sci. 46, 415-421 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: D26265|g498383 library_source= unidentified soil bacterium from soybean field BASE COUNT 68 a 71 c 81 g 58 t 4098 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... ......UU-G |-CC--UCC- 2281 UG--UUGC-U AA-CGA---- ---------- ---------- ---G(---UA ---AAG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----UCG|A 2701 G-CA-CU-C- U-GGA-GA-G A-CU-G-CCG --GU(-GA-U AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-CU CAU-G-GC-C UUUAU-G-CC -CC--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-U-GG -UA--CAAAG GGU-C-G-C- AA-AAC-C(G 2881 -CGA)GGUG- ---------- GA-GCUAA-U CCCAA-AAAG -CC-A-GUC- CCAGUUCGGA 2941 U-UGUAGUC- (UGCAAC-U- C)-GACUGCA -UGAAGU-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AC)-G CCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UU........ 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS 2.6.3-ENVI 4376 bp RNA RNA 09-JAN-1999 DEFINITION 2.6.3 ENVIRONMENTAL_CLONE_FIE17. ACCESSION No information KEYWORDS No information. SOURCE 2.6.3 ENVIRONMENTAL_CLONE_FIE17. ORGANISM 2.6.3 ENVIRONMENTAL_CLONE_FIE17. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 0 a 0 c 0 g 0 t 4376 others ORIGIN 1 x~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~-- ------~~~~ 541 ~~~~~~---- -~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~---~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- 1681 -(~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- -------~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~----~~~ 1981 ~~~~-~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~--- --~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~------ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~---~~ ---~~~--~~ 2341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- 3181 ---------- ---------- ---------- ------~)~~ ~~~~~~~~~~ ~~~~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS env.FIE17 4376 bp RNA RNA 02-JUL-1998 DEFINITION unidentified soil. ACCESSION No information KEYWORDS No information. SOURCE unidentified soil. ORGANISM unidentified soil. REFERENCE 1 AUTHORS Ueda,T., Suga,Y. and Matsuguchi,T. TITLE Molecular phylogenetic analysis of a soil microbial community in a soybean field JOURNAL Eur. J. Soil Sci. 46, 415-421 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: D26267|g498385 library_source= unidentified soil bacterium from soybean field BASE COUNT 64 a 76 c 86 g 53 t 4097 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... ......CU-G |-UU--CCU- 2281 AG--UUGC-C AG-CGA---- ---------- ---------- ---G(---UA ---AAG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----UCG|G 2701 G-GA-CU-C- U-AGG-GA-G A-CU-G-CCG --GU(-GC-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A CG-ACG--UC -A-AGUC-AU CAU-G-GU-C CUUAC-G-UC -UA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-G-GG -GA--CAGAG GGU-U-G-C- GA-GCC-G(G 2881 -CAA)CGCA- ---------- AA-GCCAA-U CCCGU-AAAC -CC-C-GCC- UCAGUUCGGA 2941 U-UGUCGUC- (UGCAAC-C- C)-GACGGCA -UGAAGC-UG -GAAU-CGC- -UAGUA-AUC 3001 GU-GGA-(UC -AGCUAC)-G CCA-CGGUG- AAUAC-GUU- CCC-GGG-CC UU........ 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS 2.6.4-NITR 4376 bp RNA RNA 09-JAN-1999 DEFINITION 2.6.4 NITROSPINA_GROUP. ACCESSION No information KEYWORDS No information. SOURCE 2.6.4 NITROSPINA_GROUP. ORGANISM 2.6.4 NITROSPINA_GROUP. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 0 a 0 c 0 g 0 t 4376 others ORIGIN 1 x~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~-- ------~~~~ 541 ~~~~~~---- -~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~---~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- 1681 -(~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- -------~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~----~~~ 1981 ~~~~-~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~--- --~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~------ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~---~~ ---~~~--~~ 2341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- 3181 ---------- ---------- ---------- ------~)~~ ~~~~~~~~~~ ~~~~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS str.s22 4376 bp RNA RNA 02-JUL-1998 DEFINITION str. s22. str. s22. ACCESSION No information KEYWORDS No information. SOURCE str. s22. str. s22. ORGANISM str. s22. REFERENCE 1 AUTHORS Pedersen,K. and Hallbeck,L. TITLE Investigation of the microbial populations in boreholes and drilling equipment used in the SELECT program JOURNAL Unpublished (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: Z69326|g1181109 isolate_name= s22 BASE COUNT 88 a 70 c 114 g 71 t 4033 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) ......GUAU |-GGGG-C-- 1201 GAG-CGUUGU UC-GGAAUUA -UU-GGGC|G UAAA-GGGU- AUG-UAG-GC -S|-GU-UU- 1261 G-AU-AAG|U CAG---GCGU G-AAA-GU-C CA-UGG-C(- UC-A)A-CCC -UG-G-AAA- 1321 -GCCG-UUUG A-AAC-UGUC A-AACUU-GA GUC-----CA G-GA-GAGGA GAG-C|GGAA 1381 UU-CCCGGU- GUA-GCG(-G UGAAA)-UGU -GU-AGAU-A UC-GGGAAG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CUCUCUG-- ---------- ---------- ---------G 1501 ACU--GG-AA CUGACG-CUG AA-A------ -------UA- C-GAAA-GC- GU-GGG-GA- 1561 GC-GAA-CG- -GG(AUUA-G AUAC)-CCC- ----GGUA-G UC----CAC- G-CU-GU--A 1621 AAC-G-AUGG G--CA-CU-- -------A|G -GU-GC-AGG -AG-GU---- ---------- 1681 -(AUC-GA)C ---------- ---------- ---------- -------CCC -GUCUG-UGC 1741 CG--UA---- ---C-(UAA- ---C)G-CA- UUAA-GUGCC C|C|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Nts.gracil 4376 bp RNA RNA 02-JUL-1998 DEFINITION Nitrospina gracilis str. Nb-3. ACCESSION No information KEYWORDS No information. SOURCE Nitrospina gracilis str. Nb-3. ORGANISM Nitrospina gracilis. REFERENCE 1 AUTHORS Teske,A., Alm,E., Regan,J.M., Toze,S., Rittmann,B.E. and Stahl,D.A. TITLE Evolutionary relationships among ammonia- and nitrite-oxidizing bacteria JOURNAL J. Bacteriol. 176, 6623-6630 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: L35503|g530897 geog_source= Pacific Ocean isolate_name= Nb-3 BASE COUNT 345 a 304 c 397 g 258 t 3072 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... ......U--A ACAC-AUGCA A-GUC-GAAC 121 G--------- -----AGAAA ---------- ---------- ---------- ---------- 181 ---------- ---------- ----GUU-CC (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... ...UUU---N -AGAU-U-GG 421 -GAU-AA-CC U--------- ------NA-- C(-NAAA-)G -UNAG-G--C UAAUACC-GA 481 AU-AAN---- ---------- -------A-C CA-C--G-U- ---CUC-(-- --------AU 541 AA-------- -)-GAG---- AU-GC----G GC--AAAA-- ---GGAGU-- ---------- 601 --(------- ---CUCAA-- ---)------ ---------| --ACUC--C- A--CUC---- 661 ----AAAG-- AUG---A-|G UUCGC----- -GG|----AC C--AUUA-G- CUA-G---UU 721 GG-UA-AG-( AU-AAA-AG) -C-UCACC-A A|-GGC-UA- CGA------- -----UG-GU 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGU ----GA-U-- CGG-C|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUUUU G-CGCAAU-- GG-GC-(GAA A)-GCC-UGA CGCA|-GCAA CGCC-GC-GU 961 G-A-GC-G-A U-GAA--G-G NC(--UU-CG --)GG-UCGU AAA--GCUC| UGUC-GG-GU 1021 --GG-GAA-- GA-AC----- ---------( ------ANAA ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CCN-C-CA A-AG--GAAG ---------C 1141 -CCCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) C-A-C-GGAG |-GGGG-C-- 1201 NAG-CGUUGU UC-GGAAUNA -UU-GGGC|G UAAA-GCGU- AUG-UAG-GU -G|-GC-CG- 1261 G-AU-AAG|U CAG---ACGU G-UAA-GC-C CA-CGG-C(- UC-A)A-CCG -UG-G-AAU- 1321 -UGCG-UUUG A-AAC-UAUU C-GGCUU-GA GUG-----CA G-GA-GAGGA AAG-C|GGAA 1381 UU-UCCAGU- GUA-NCG(-G UGAAA)-UGC -GU-UGAU-A UU-UGGAAG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CUNUCUG-- ---------- ---------- ---------G 1501 CCU--GC-AA CUGACA-CUG AG-A------ -------UA- C-GAAA-GC- CA-GGG-GA- 1561 GC-GAA-CG- -GN(AUUA-G AUAC)-CCN- ----NGUA-G UC----CUG- G-CU-GU--A 1621 AAC-G-AUGG G--CA-CU-- -------A|G -NU-GU-AGG -AG-GU---- ---------- 1681 -(GUU-GA)U ---------- ---------- ---------- -------CCC -UUCUG-UGC 1741 CG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GUGNC C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-G CU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(ACGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-AU-UUG ACU-UG|--- ---------C ---UUGG-G- ACC----GCC 1981 -UUG-G--(- AAAC-)-AAG -G-NNNN--- NC-------- ---CU----- --(UC----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------N G-)------- GG-------- ----GC---| CC--UU-GCA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-UCCGC AA-------- CGAG-C--GC AACCC-CU-A |-CC--UUU- 2281 AG--UUGC-C AG-CGG---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CCG|G 2701 N-AA-CU-C- U-AAA-GG-A A-CU-G-UCG --GU(-GA-U AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-CU CAU-G-GC-C UUUAU-G-UC -CA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-C-GG -UA--CAAAG AGU-U-G-C- AA-UAC-C(G 2881 -CGA)GGUG- ---------- GA-GCUAA-U CNNAA-AAAG -CC-G-GUC- UCAGUUNGGA 2941 U-UGGAGUC- (UGCAAC-U- N)-GACUCCA -UGAAGC-UG -GAAU-CGC- -UAGUA-AUN 3001 GU-GGA-(UC -AGC-AU)-G CCA-CGGUG- AAUAC-GUU- CCC-GGG-CC UNGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGAA A--GC-CGA- NN-GN-ACCA -GAA-G-NGA 3121 C-NAN-G-NU -AA-CN---- ---------- ---------- -----(---- -NUNG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- GGGAGC-U-A C......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Nts.graci2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Nitrospina gracilis str. Nb-211. ACCESSION No information KEYWORDS No information. SOURCE Nitrospina gracilis str. Nb-211. ORGANISM Nitrospina gracilis. REFERENCE 1 AUTHORS Teske,A., Alm,E., Regan,J.M., Toze,S., Rittmann,B.E. and Stahl,D.A. TITLE Evolutionary relationships among ammonia- and nitrite-oxidizing bacteria JOURNAL J. Bacteriol. 176, 6623-6630 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: L35504|g530898 geog_source= Atlantic Ocean isolate_name= Nb-211 BASE COUNT 364 a 332 c 447 g 294 t 2939 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .........C -GNNC-GC-- UGGC-GGC-G -UGC-CU--A ACAC-AUGCA A-GUC-GAAC 121 G--------- -----AGAAA ---------- ---------- ---------- ---------- 181 ---------- ---------- ----GUU-CC (--UU----- ---------- ---------- 241 --------CG -)GG-AAU-- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- NGUGAA---- ---|------ AGUG-GCGC- 361 -A-AG-GG-U GAGU---AAC -AC-GUGAA- UAA--UCU-G C-CUUU---G -AGUU-U-GG 421 -GAU-AA-CC U--------- ------GA-- C(-GAAA-)G -UUAG-G--C UAAUACC-GA 481 AU-AAG---- ---------- -------A-C CA-C--G-U- ---CUC-(-- --------AC 541 AA-------- -)-GAG---- AU-GC----G GU--AAAA-- ---GGAGU-- ---------- 601 --(------- ---CUCAA-- ---)------ ---------| --ACUC--C- A--CUC---- 661 ----AAAG-- AUG---A-|G UUCGC----- -GG|----AC C--AUUA-G- CUA-G---UU 721 GG-UG-AG-( AU-AAA-AG) -C-UCACC-A A|-GGC-UA- CGA------- -----UG-GU 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGU ----GA-U-- CGG-C|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUUUU G-CGCAAU-- GG-GC-(GAA A)-GCC-UGA CGCA|-GCAA CGCC-GC-GU 961 G-A-GC-G-A U-GAA--G-G NC(--UU-CG --)GG-UCGU AAA--GCUC| UGUC-GG-GU 1021 --GG-GAA-- GA-AC----- ---------( ------AAAA ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CCA-C-CA A-AG--GAAG ---------C 1141 -CCCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) C-A-C-GGAG |-GGGG-C-- 1201 GAG-CGUUGU UC-GGAAUCA -UU-GGGC|G UAAA-GCGU- AUG-UAG-GU -G|-GC-CG- 1261 G-AU-AAG|U CAG---ACGU G-UAA-GC-C CA-CGG-C(- UC-A)A-CCG -UG-G-AAU- 1321 -UGCG-UUUG A-AAC-UAUU C-GGCUU-GA GUG-----CA G-AA-GAGGA AAG-C|GGAA 1381 UU-UCCAGU- GUA-GCG(-G UGAAA)-UGC -GU-UGAU-A UU-GGGAAG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CUUUCUG-- ---------- ---------- ---------G 1501 UCU--GC-AA CUGACA-CUG AG-A------ -------UA- C-GAAA-GC- CA-GGG-GA- 1561 GC-GAA-CG- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CUG- G-CU-GU--A 1621 AAC-G-AUGG G--CA-CU-- -------A|G -GU-GU-AGG -AG-GU---- ---------- 1681 -(GUU-GA)U ---------- ---------- ---------- -------CCC -UUCUG-UGC 1741 CG--UA---- --GC-(UAA- ---C)G-CA- UUAA-GUGCC C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-G CU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(ACGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-AU-UUG ACU-UG|--- ---------C ---UUGG--- GAC----CGC 1981 -CUU-G--(- GAAA-)-CAA -G-GUUU--- ---------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----G----| CCC-UU-GCA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-UCCGC AA-------- CGAG-C--GC AACCC-CU-A |-CC--UUU- 2281 AG--UUGC-C AG-CGG---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CCG|G 2701 G-AA-CU-C- U-AAA-GG-A A-CU-G-UCG --GU(-GA-U AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-CU CAU-G-GC-C UUUAU-G-UC -CA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-C-GG -UA--CAAAG AGU-U-G-C- AA-UAC-C(G 2881 -CGA)GGUG- ---------- GA-GCUAA-U CUCAA-AAAG -CC-G-GUC- UCAGUUCGGA 2941 U-UGGAGUC- (UGCAAC-U- C)-GACUCCA -UGAAGC-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G CCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGAA A--GC-CGA- CU-GU-ACCA -GAA-G-UCA 3121 C-GAU-G-CU -AA-CC---- ---------- ---------- -----(---- -UUCG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGGAG-C-U A-CU-GC-CU A-AGGU-AUG GUU-GG-UG- AUC-GGGG-U 3301 G......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS 2.7-FLEXIB 4376 bp RNA RNA 09-JAN-1999 DEFINITION 2.7 FLEXIBACTER-CYTOPHAGA-BACTEROIDES_PHYLUM. ACCESSION No information KEYWORDS No information. SOURCE 2.7 FLEXIBACTER-CYTOPHAGA-BACTEROIDES_PHYLUM. ORGANISM 2.7 FLEXIBACTER-CYTOPHAGA-BACTEROIDES_PHYLUM. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 0 a 0 c 0 g 0 t 4376 others ORIGIN 1 x~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~-- ------~~~~ 541 ~~~~~~---- -~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~---~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- 1681 -(~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- -------~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~----~~~ 1981 ~~~~-~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~--- --~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~------ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~---~~ ---~~~--~~ 2341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- 3181 ---------- ---------- ---------- ------~)~~ ~~~~~~~~~~ ~~~~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS 2.7.1-SUBD 4376 bp RNA RNA 09-JAN-1999 DEFINITION 2.7.1 SUBDIVISION_I. ACCESSION No information KEYWORDS No information. SOURCE 2.7.1 SUBDIVISION_I. ORGANISM 2.7.1 SUBDIVISION_I. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 0 a 0 c 0 g 0 t 4376 others ORIGIN 1 x~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~-- ------~~~~ 541 ~~~~~~---- -~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~---~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- 1681 -(~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- -------~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~----~~~ 1981 ~~~~-~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~--- --~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~------ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~---~~ ---~~~--~~ 2341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- 3181 ---------- ---------- ---------- ------~)~~ ~~~~~~~~~~ ~~~~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS 2.7.1.1-BA 4376 bp RNA RNA 09-JAN-1999 DEFINITION 2.7.1.1 BACTEROIDES_GROUP. ACCESSION No information KEYWORDS No information. SOURCE 2.7.1.1 BACTEROIDES_GROUP. ORGANISM 2.7.1.1 BACTEROIDES_GROUP. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 0 a 0 c 0 g 0 t 4376 others ORIGIN 1 x~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~-- ------~~~~ 541 ~~~~~~---- -~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~---~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- 1681 -(~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- -------~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~----~~~ 1981 ~~~~-~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~--- --~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~------ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~---~~ ---~~~--~~ 2341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- 3181 ---------- ---------- ---------- ------~)~~ ~~~~~~~~~~ ~~~~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS 2.7.1.1.1 4376 bp RNA RNA 09-JAN-1999 DEFINITION 2.7.1.1.1 ANAEROFLEXUS_ASSEMBLAGE. ACCESSION No information KEYWORDS No information. SOURCE 2.7.1.1.1 ANAEROFLEXUS_ASSEMBLAGE. ORGANISM 2.7.1.1.1 ANAEROFLEXUS_ASSEMBLAGE. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 0 a 0 c 0 g 0 t 4376 others ORIGIN 1 x~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~-- ------~~~~ 541 ~~~~~~---- -~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~---~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- 1681 -(~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- -------~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~----~~~ 1981 ~~~~-~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~--- --~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~------ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~---~~ ---~~~--~~ 2341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- 3181 ---------- ---------- ---------- ------~)~~ ~~~~~~~~~~ ~~~~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Bac.putred 4376 bp RNA RNA 02-JUL-1998 DEFINITION Bacteroides putredinis str. 1 Ando ATCC 29800 (T). ACCESSION No information KEYWORDS No information. SOURCE Bacteroides putredinis str. 1 Ando ATCC 29800 (T). ORGANISM Bacteroides putredinis. REFERENCE 1 AUTHORS Paster,B.J., Dewhirst,F.E., Olsen,I. and Fraser,G.J. TITLE Phylogeny of Bacteroides, Prevotella, and Porphyromonas spp. and related bacteria JOURNAL J. Bacteriol. 176, 725-732 (1994) STANDARD No information COMMENTS Organism information Culture collection: ATCC 29800 (T) Sequence information (bases 1 to 4376) Corresponding GenBank entry: L16497 ATCC 29800 (T) = VPI 3293 biol_source= human feces isolate_name= 1 Ando NB: former name Bacteroides putredenis BASE COUNT 375 a 322 c 438 g 313 t 2928 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~CNAUGG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAU -NAAC-GC-- UAGC-GGC-A -GGC-UU--A ACAC-AUGCA A-GUC-GAGG 121 G--GC-AG-C -A-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- UCAUGGA-UA (--GC----- ---------- ---------- 241 --------AA -)UA-UCUAU GG-------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- UCG|-GC--G ACCG-GCGC- 361 -A-CG-GG-U GCGU---AAC -GC-GUAUG- CAA--CCU-A C-CUUU---A -ACAG-G-GG 421 -GAU-AA-CA C--------- ------CG-- A(-GAAA-)U -UGGU-A--C UAAUACC-CC 481 AU-AAU---- ---------- -------A-U CA-U--A-GA ----AG-(-- --------GC 541 AU-------- -)-CUN---U UA-UG----G UU--GAAA-- ---AU----- ---------- 601 --(------- ---UCCG--- ---)------ ---------| -----A--U- G--GUU---- 661 ----AGAG-- AUG---G-|G CAUGC----- -GU|----UG U--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAC-GG) -C-UCACC-A A|-GGC-AA- CGA------- -----UA-CA 781 U-AG-G-GG| -G-ACU--(G -AGA)-GGUU ----AA-C-- CCC-C|C-AC -ACUGG-U-A 841 (CUGA-GA-C ACG)--GACC -NGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 AGG-AAUAUU G-GUCAAU-- GG-AC-(GCA A)-GUC-UGA ACCA|-GCCA UGCC-GC-GU 961 G-C-AG-G-A U-GAC--G-G CU(C-UN-U- -G)AG-UUGU AAA--CUNC| UUUU-GU-AC 1021 --GA-GGG-- UA-AACG-CA --GAU-A--( -----CGUG- ---------) --UA-UC-UG 1081 ---------- -------U-C U-GA-AAGU- A-UCG-U-AC G-AA--UAAG ---------G 1141 -AUCGGCU-A ACUCC-GUG( CCA--GCAGC CGCNGUN-A) U-A-C-GGAG |-GAUU-C-- 1201 NAG-CGUUAU CC-GGAUUUA -UU-GGGU|U UAAA-GGGU- GCG-UAG-GC -G|-GU-UU- 1261 G-AU-AAG|U UAG---AGGU G-AAA-UU-U CG-GGG-C(- UC-A)A-CCC -UG-A-ACG- 1321 -UGCC-UCUN A-UAC-UGUU G-AGCUA-GA GAG-----UA G-UU-GCGGU AGG-C|GGAA 1381 UG-UAUGGU- GUA-GCG(-G UGAAA)-UGC -UU-AGAG-A UC-AUACAG- AACA-CCGA- 1441 -U-U-GC(-G AA-G)GCAG- -CUUACCN-- ---------- ---------- ---------A 1501 ACU--AU-AU CUGACG-CUG AU-G------ -------CN- N-NAAA-GC- GU-NGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CA-GU--A 1621 AAC-G-AUGA U--AA-CU-- -------C|G -UU-GU-CGG -CG------- ---------- 1681 -(AUA-CA)C ---------- ---------- ---------- ---------A -GUCGG-UGA 1741 CU--AA---- --GC-(GAA- ---A)G-CG- AUNA-GUUAU C|C|A-CCU- G-GGGAGUAC 1801 GUU-C---(G CAA)---G-A AU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGAGG-AAC A-U-GU-GGU -UUAAUU-CG -(AUGAUA-C G)--CGAGGA 1921 A-CCUUA-CC CGG-GC-UUG AAA-GU|--- ---------U ---AGCG--- -AC----GAU 1981 -UCU-U--(- GAAA-)-GAG -G-AUUU--- ---------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- -----G---| CGC-GA-AAC |---U|A--G 2161 GU-GC-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GC-C(-GUG A)-GGUGU-C 2221 GG-G-(UUAA -GU)-CCCAU AA-------- CGAG-C--GC AACCC-CU-A |-CC--GUU- 2281 AG--UUGC-C AU-CAG---- ---------- ---------- ---N(---UG ---AAG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CUG|G 2701 G-CN-CU-C- U-GGC-GG-G A-CU-G-CCG --GU(-G--U AA)-GCC-GA -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AG CAC-G-GC-C CNUAC-G-UC -CG--GGGC- 2821 U-ACA-CA-C GUG--UUACA AUGGU-A-GG -UA--CAGAG GGC-A-G-C- UA-CCC-A(G 2881 -CGA)UGGG- ---------- AU-GCGAA-U CUCG--AAAG -CC-U-AUC- UCAGUUCGGA 2941 U-UGGAGGC- (UGAAAC-C- C)-GCCUCCA -UGAAGU-UG -GAUU-CGC- -UAGUA-AUC 3001 GC-GCA-(UC -AGCCAU)-G GCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-AAG--- --CCA-UGGG A--GC-CGG- GG-GU-GCCU -NAA-G-UUC 3121 G-U------- -GA-CC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGA------ G-CG-AC-CU A-GGGC-AAA ACU-GG-UG- AC........ 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Rik.mifusu 4376 bp RNA RNA 02-JUL-1998 DEFINITION Rikenella microfusus. ACCESSION No information KEYWORDS No information. SOURCE Rikenella microfusus. ORGANISM Rikenella microfusus. REFERENCE 1 AUTHORS Paster,B.J., Dewhirst,F.E., Olsen,I. and Fraser,G.J. TITLE Phylogeny of Bacteroides, Prevotella, and Porphyromonas spp. and related bacteria JOURNAL J. Bacteriol. 176, 725-732 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: L16498 biol_source= quail cecum BASE COUNT 376 a 329 c 448 g 310 t 2913 others ORIGIN 1 .......... .......... .......... ..UACUAUGG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAU -NAAC-GC-- UAGC-GGC-A -GGC-CU--A ACAC-AUGCA A-GUC-GAGG 121 G--GC-AG-C GA-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -GGCGGA-AG (--CU----- ---------- ---------- 241 --------UG -)CU-UCCGC U--------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- UCG|-GC--G ACCG-GCGC- 361 -A-CG-GG-U GCGU---AAC -GC-GUAUG- UAA--CCU-A C-CUUA---U -ACAG-G-AG 421 -GAU-AA-CC C--------- ------GG-- A(-GAAA-)U -UCGG-A--C UAAUACU-CC 481 AU-AGG---- ---------- ---------U AU-A--U-UU ---UCG-(-- --------GC 541 AU-------- -)-CGG---A GA-UA----U AU--GAAA-- ---GA----- ---------- 601 --(------- ---UUCA--- ---)------ ---------| -----U--C- G--GUA---- 661 ----UAAG-- AUG---G-|A CAUGC----- -GU|----GA C--AUUA-G- CUG-G---AU 721 GG-UG-AG-( GU-AAC-GG) -C-UCACC-A U|-GGC-GA- CGA------- -----UG-UC 781 U-AG-G-GG| -U-UCU--(G -AGA)-GGAA ----GG-U-- CCC-C|C-AC -ACUGG-U-A 841 (CUGA-GA-C ACG)--GACC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 AGG-AAUAUU G-GUCAAU-- GG-AC-(GGA A)-GUC-UGA ACCA|-GCCA UGCC-GC-GU 961 G-C-AG-G-A C-GAC--G-G CU(C-UA-U- -G)AG-UUGU AAA--CUGC| UUUU-GU-AC 1021 --GA-GAA-- UA-ACGG-UA --UCU-A--( -----CGUG- ---------) --UA-GG-UA 1081 ---------- -------A-U U-GA-AUGU- A-UCG-U-AC G-AA--UAAG ---------G 1141 -AUCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-NAUU-C-- 1201 GAG-CGUUAU CC-GGAUUUA -UU-GGGU|U UAAA-GGGU- GCG-UAG-GC -G|-GC-CC- 1261 G-GU-AAG|U UAG---AGGU G-AAA-UU-C AG-CGG-C(- UU-A)A-CCG -CA-G-AAC- 1321 -UGCC-UCUG A-UAC-UGUC G-GGCUG-GA GAG-----UA G-AU-GCAGC AGG-C|GGAA 1381 UG-AGUAGU- GUA-GCG(-G UGAAA)-UGC -UU-AGAU-A UU-ACUCAG- AACA-CCGA- 1441 -U-U-GC(-G AA-G)GCAG- -CUUGCUN-- ---------- ---------- ---------A 1501 UCU--AU-AU CUGACG-CUG AU-G------ -------CA- C-GAAA-GC- GU-GGG-UA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CA-GU--A 1621 AAC-G-AUGA U--AA-CU-- -------C|G -UU-GU-CGG -CG------- ---------- 1681 -(AUA-CA)C ---------- ---------- ---------- ---------A -GUCGG-UGA 1741 CC--CA---- --GC-(GAA- ---A)G-CG- AUAA-GUUAU C|C|A-CCU- G-GGGAGUAC 1801 GAC-C---(G CAA)---G-G UU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGAGG-AAC A-U-GU-GGU -UUAAUU-CG -(AUGAUA-C G)--CGAGGA 1921 A-CCUUA-CC CGG-GC-UUG AAA-GU|--- -------U-A ---GCGA--- -CC----GCC 1981 -UUU-G--(- AAAG-)-AGG -G-CUUC--- ---------- ---UC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GA-------- ---------| GCG-CGAAAC |---U|A--G 2161 GU-GC-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GC-C(-GUG A)-GGUGU-C 2221 GG-G-(UUAA -GU)-CCCAU AA-------- CGAG-C--GC AACCC-CU-G |-UU--CAU- 2281 AG--UUAC-C AG-CAU---- ---------- ---------- ---G(---UA ---GUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-GA-CU-C- U-AUG-AA-G A-CU-G-CCG --GU(-G--U AA)-ACC-GC -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AG CAC-G-GC-C CUUAC-G-UC -CG--GGNN- 2821 G-ACA-CA-C GUG--UUACA AUGGC-C-GG -UA--CAGAG GGC-A-G-C- GA-AMY-A(G 2881 -CGA)URKU- ---------- AA-GCGAA-U CUCAU-AAAG -CC-G-GUC- UCAGUUCGGA 2941 U-UGCAGGC- (UGCAAC-U- C)-GCCUGCA -UGAAGU-UG -GAUU-CGC- -UAGUA-AUC 3001 GC-GCA-(UC -AGCCAU)-G GCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-AAG--- --CCA-UGGA A--GC-CGG- GG-GU-GCCU -GAA-G-UAC 3121 G-U------- -GA-CC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGA------ G-CG-UC-CU A-GGGC-AAA ACU-GG-UA- AC........ 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS str.1035 4376 bp RNA RNA 02-JUL-1998 DEFINITION str. SBR1035. str. SBR1035. ACCESSION No information KEYWORDS No information. SOURCE str. SBR1035. str. SBR1035. ORGANISM str. SBR1035. REFERENCE 1 AUTHORS Bond,P.L., Hugenholtz,P., Keller,J. and Blackall,L.L. TITLE Bacterial community structures of phosphate-removing and non-phosphate-removing activated sludges from sequencing batch reactors JOURNAL Appl. Environ. Microbiol. 61 (5), 1910-1916 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X84478|g871599 isolate_name= SBR1035 BASE COUNT 99 a 83 c 124 g 80 t 3990 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... UAGC-GGG-A -GGC-UU--A ACNC-NUGCN A-GUC-GAGG 121 G--GU----- -----AUU-- ---------- ---------- ---------- ---------- 181 ---------- ---------- ------G-UA (--GC----- ---------- ---------- 241 --------AA -)UA-C---- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --AUUA---- ---|-----G ACCG-GCGC- 361 -A-CG-GG-U GAGU---AAC -GC-GUAUG- CAA--CCU-G C-CGUU---A -ACCG-G-GG 421 -GAU-AG-CC C--------- ------GU-- C(-GAAA-)G -GCGG-A--U UAAUACC-CC 481 AU-AAU---- ---------- -------A-U UG-G--G-AU ---UCU-(-- --------GC 541 AU-------- -)-GGG---A UU-UC----A AU--UAAA-- ---GC----- ---------- 601 --(------- ---UGAG--- ---)------ ---------| -----G--U- G--GUU---- 661 ----AACG-- AUG---G-|G CAUGC----- -GU|----GA C--AUUA-G- CUA-G---UU 721 GG-UA-GG-( GU-AAC-GG) -C-CUACC-A A|-GGC-UA- CGA------- -----UG-UC 781 U-AG-G-GG| -U-UCU--(G -AGA)-GGAA ----GG-U-- CCC-C|C-AC -ACUGG-U-A 841 (CUGA-GA-C ACG)--GACC -AGA-C-UCC -(UACG)--G GAG-GN-AG- N-A---GU-G 901 AGG-AAUAUU G-GUCAAU-- GG-GC-(GAG A)-GCC-UGA ACCA|-GCCA UCCC-GC-GU 961 G-C-AG-G-A A-GAC--G-G NC(C-UA-U- -G)GG-UUGU AAA--CUGC| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS str.2008 4376 bp RNA RNA 02-JUL-1998 DEFINITION str. SBR2008. str. SBR2008. ACCESSION No information KEYWORDS No information. SOURCE str. SBR2008. str. SBR2008. ORGANISM str. SBR2008. REFERENCE 1 AUTHORS Bond,P.L., Hugenholtz,P., Keller,J. and Blackall,L.L. TITLE Bacterial community structures of phosphate-removing and non-phosphate-removing activated sludges from sequencing batch reactors JOURNAL Appl. Environ. Microbiol. 61 (5), 1910-1916 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X84553|g871674 isolate_name= SBR2008 BASE COUNT 100 a 85 c 124 g 80 t 3987 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... UAGC-GGG-A -GGC-UU--A ACNC-AUGCA A-GUC-GAGG 121 G--GU----- -----AUU-- ---------- ---------- ---------- ---------- 181 ---------- ---------- ------G-UA (--GC----- ---------- ---------- 241 --------AA -)UA-C---- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --NUUA---- ---|-----G ACCG-GCGC- 361 -A-CG-GG-U GAGU---AAC -GC-GUAUG- CAA--CCU-G C-CGUU---A -ACCG-G-GG 421 -GAU-AG-CC C--------- ------GU-- C(-GAAA-)G -GCGG-A--U UAAUACC-CC 481 AU-AAU---- ---------- -------A-U UG-G--G-AU ---UCU-(-- --------GC 541 AU-------- -)-GGG---A UU-UC----A AU--UAAA-- ---GC----- ---------- 601 --(------- ---UGAG--- ---)------ ---------| -----G--U- G--GUU---- 661 ----AACG-- AUG---G-|G CAUGC----- -GU|----GA C--AUUA-G- CUA-G---UU 721 GG-UA-GG-( GU-AAC-GG) -C-CUACC-A A|-GGC-UA- CGA------- -----UG-UC 781 U-AG-G-GG| -U-UCU--(G -AGA)-GGAA ----GG-U-- CCC-C|C-AC -ACUGG-U-A 841 (CUGA-GA-C ACG)--GACC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 AGG-AAUAUU G-GUCAAU-- GG-GC-(GAG A)-GCC-UGA ACCA|-GCCA UCCC-GC-GU 961 G-C-AG-G-A A-GAC--G-G NC(C-UA-U- -G)GG-UUGU AAA--CUGC| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Anf.mariti 4376 bp RNA RNA 02-JUL-1998 DEFINITION "Anaeroflexus maritimus" str. PL12FS DSM 2831. ACCESSION No information KEYWORDS No information. SOURCE "Anaeroflexus maritimus" str. PL12FS DSM 2831. ORGANISM "Anaeroflexus maritimus". REFERENCE 1 AUTHORS Woese,C.R. JOURNAL Unpublished (1993) STANDARD No information COMMENTS Organism information Culture collection: DSM 2831 isolate_name= PL12FS BASE COUNT 358 a 314 c 411 g 303 t 2990 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~NNNG AUUACAACGA AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAU -NAAC-GC-- UAGC-GGG-A -GGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--GU-AA-C AG-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ----GGU-CC (--UU----- ---------- ---------- 241 --------CG -)GG-ACU-- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- CUG|-AC--G AGUG-GCGC- 361 -A-CG-GG-U GAGU---AAC -GC-GUAUG- CAA--CCU-G C-CCUG---U -ACAG-G-GG 421 -GAU-AG-CC C--------- ------GG-- A(-GAAA-)U -CCGG-A--U UAAUACC-CC 481 AU-AGU---- ---------- -------U-U CC-G--U-GA ---AUC-(-- --------GC 541 AU-------- -)-GGU---U UA-UG----G AU--UAAA-- ---GU----- ---------- 601 --(------- ---UUCG--- ---)------ ---------| -----G--C- G--GUA---- 661 ----CAGG-- AUG---G-|G CAUGC----- -GU|----GG C--AUUA-G- CUA-G---UU 721 GG-UA-AG-( GU-AAC-GG) -C-UUACC-A A|-GGC-GA- CGA------- -----UG-CC 781 U-AG-G-GG| -U-UCU--(G -AGA)-GGAU ----GA-U-- CCC-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCN -NGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 AGG-AAUAUU G-GUCAAU-- GG-GC-(GAG A)-GCC-NGA ACCA|-GCCA UCCC-GC-GU 961 G-C-AG-G-A U-GAC--G-G CC(C-UA-C- -G)GG-UUGU AAA--CUGC| UUUU-CU-GC 1021 --AA-GAA-- GA-AUGG-UC --ACU-A--( -----CGUG- ---------) --UA-GU-GA 1081 ---------- -------U-U U-GA-CGGU- A-UUG-C-AG G-AA--UAAG ---------C 1141 -AUCGGCU-A ACUCC-GUG( CCA--GCAGC CNCGGUA-A) U-A-C-GGAG |-NAUG-C-- 1201 NAG-CGUUAU CC-GGAUUCA -UU-GGGU|U UAAA-GGGU- GCG-UAG-GC -G|-GC-UA- 1261 U-AU-AAG|U CAG---UGGU G-AAA-UG-C UG-CAG-C(- UC-A)A-CUG -UA-G-AAC- 1321 -UGCC-AUUG A-AAC-UGUA U-AGCUU-GA GUG-----CG C-GU-GAGGU AGG-C|GGAA 1381 UG-AGUAGU- GUA-GCG(-G UGAAA)-UGC -UU-AGAU-A UU-ACUCAG- AACA-CCGA- 1441 -U-U-GC(-G AA-G)GCAG- -CUUACUA-- ---------- ---------- ---------A 1501 AGC--GU-AA CUGACG-CUG AU-G------ -------CA- C-GAAA-GC- GU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA U--AA-CU-- -------C|G -CU-GU-UGG -CG------- ---------- 1681 -(AUA-CA)C ---------- ---------- ---------- ---------A -GUCAG-CGG 1741 CU--UA---- --GC-(GAA- ---A)G-CA- UUAA-GUUAU C|C|A-CCU- G-GGGAGUAC 1801 GAU-C---(G CAA)---G-G UU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGAGG-AAC A-U-GU-GGU -UUAAUU-CG -(AUGAUA-C G)--CGAGGA 1921 A-CCUUA-CC UGG-GC-UUA AAU-GU|--- -------A-G ---AAUG--- -AC----CGU 1981 -UGC-C--(- GAAA-)-GGU -G-ACCU--- A--------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- -----G---| CGU-UU-UAC |---A|A--G 2161 GU-GC-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GC-C(-GUG A)-GGUGU-U 2221 .....(.... ...)...... .......... .........C AACCC-UU-A |-UC--G... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... ........UC -A-AAUC-AG NNN-N-GC-C CUUAU-G-UC -CA--GGGC- 2821 U-ACA-CA-C GUG--UUACA AUGGU-C-GG -UA--CAAAG GGC-A-G-C- UA-CCU-G(G 2881 -UAA)CAGG- ---------- AU-GCUAA-U CCCA--AAAG -CC-G-GUC- UCAGUUCGGA 2941 U-UGGAGUC- (UGCAAC-C- C)-GRCUCCA -UGAAGC-UG -GAUU-CGC- -UAGUA-AUC 3001 GC-GCA-(UC -AGCCAU)-G GCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-AAA--- --CCA-UGGA A--GU-UGG- GG-GU-ACCU -GAA-G-UCU 3121 G-C------- -AA-CC---- ---------- ---------- -----(---- -GYAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGA------ G-CG-GC-CU A-GGGU-AAA ACC-AA-UG- ACU-GG.... 3301 .......... GUAA-CAAG. .......... .(.....).. .......... GAACACCUCC 3361 UUUC|U~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS env.PAD30 4376 bp RNA RNA 02-JUL-1998 DEFINITION unidentified soil. ACCESSION No information KEYWORDS No information. SOURCE unidentified soil. ORGANISM unidentified soil. REFERENCE 1 AUTHORS Ueda,T. TITLE Genetic diversity in soil bacteria JOURNAL Unpublished (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: D26217|g498419 library_source= unidentified soil bacterium from paddy field BASE COUNT 70 a 68 c 80 g 60 t 4098 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... ......CU-A |-UU--GUU- 2281 AG--UUGC-C AG-CGG---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CCG|G 2701 G-AA-CU-C- U-AAC-GA-A A-CU-G-CCG --GU(-G--U AA)-ACC-GA -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AG CAC-G-GC-C CUUAU-G-UC -CA--GGGC- 2821 U-ACA-CA-C GUG--UUACA AUGGC-C-GG -UA--CAAAG GGC-A-G-C- UA-CUU-G(G 2881 -UGA)CAAG- ---------- AU-GCUAA-U CUCG--AAAA -CC-G-GUC- UCAGUUCGGA 2941 U-CGAAGUC- (UGCAAC-U- C)-GACUUCG -UGAAGC-UG -GAUU-CGC- -UAGUA-AUC 3001 GC-GCA-(UC -AGCAAC)-G GCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UU........ 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Cy.xylanol 4376 bp RNA RNA 02-JUL-1998 DEFINITION Cytophaga xylanolytica str. XM3. ACCESSION No information KEYWORDS No information. SOURCE Cytophaga xylanolytica str. XM3. ORGANISM Cytophaga xylanolytica. REFERENCE 1 AUTHORS Haack,S.K. and Breznak,J.A. TITLE Cytophage Xylanolytica sp. nov., a polysaccharide-degrading, anaerobic, gliding bacterium JOURNAL Arch. Microbiol. 159, 6-15 (1993) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: M80587 isolate_name= XM3 BASE COUNT 224 a 185 c 273 g 199 t 3495 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... UAGGUU---- 661 ----GUAG-- AUG---G-|G NAUGC----- -GU|----GN C--AUUA-G- CUN-G---UU 721 GG-UA-AG-( GU-NNC-GG) -C-UUNCN-N A|-GGC-AA- CGA------- -----UG-UN 781 U-AG-G-GG| -U-UCU--(G -AGA)-GGAA ----GG-U-- CCC-C|C-AC -ACUGG-U-A 841 (CUGA-GA-C ACG)--GACC -AGN-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 AGG-AAUAUU G-GUCAGAU- GG--C-(GAG A)-GCC-UNA ACCA|-GCCA UGUC-GC-GU 961 G-C-AG-G-A U-GAC--G-G -C(C-UA-C- -G)GG-UUGU AAA--CUNN| NUUU-GU-AC 1021 --GG-GAA-- GA-AAAA-AC --GCC-A--( -----CGUG- ---------) --UG-GU-GU 1081 ---------- -------C-U U-GC-CGGU- A-CCG-U-AC G-AA--UAAG ---------G 1141 -AUCGGCU-A -C.......( .......... .........) .......... |......... 1201 ........AU -C-GGANUUA -NU-GGGU|U UAAA-GGGU- GCG-UAG-GC -G|-GN-NN- 1261 N-UU-AAG|U CAG---UGGU G-AAA-GU-U UG-CGG-C(- UC-A)A-CCG -UG-A-AAU- 1321 -UGCN-AUUG A-UNC-UGGU U-UUCUU-GA GUA-----CA G-UU-GAGGU AGG-C|GGAA 1381 UG-UGGUGU- GUA-GCG(-G UGAAA)-UGC -UU-AGAU-A UA-CCACAG- AACA-CCGA- 1441 -U-U-GC(-G AA-G)GCAG- -CUUACUN-- ---------- ---------- ---------A 1501 AGU--GU-AA CUGACG-CUG AU-G------ -------CN- C-GAAA-GC- GU-GGG-GA- 1561 UC-AAA-CA- -GG(AUUA-G AUNC)-CCU- ----GGUA-G UC----CAC- G-CA-GU--A 1621 AAC-G-AUGA U--CN-CU-- -------C|G -UU-GU-UUG -CG------- ---------- 1681 -(AUA-CA)U ---------- ---------- ---------- ---------U -GCAAG-UGA 1741 CC--AA---- --GA-(GAA- ---A)U-CG- AUAA-GUGAU C|C|A-CCU- G-GGGAGUAC 1801 GGN-C---(G CAA)---G-G -------CUC .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(...A -GU)-CCNNN NA-------- CGAG-C--GC AACCC-NN-N |-UC--GUU- 2281 AG--UUGC-C AU-NAG---- ---------- ---------- ---G(---UN ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CUG|G 2701 G-CA-CU-C- U-ANN-GA-G A-CU-G-CNG --GU(-GN-U AA)-ACC-GC -GAGG-A-AG 2761 G-UG-UGG-A UG-ACG--UC -A-AAUN-CA GCN-N-GG-C NNUGC-G-AU -NA--GGGC- 2821 U-ACA-CA-C GUG--UUACA AUGGC-C-GG -UA--CAGAG GGC-U-G-C- UA-CCA-U(G 2881 -CGA)AUGG- ---------- AU-GCUAA-U CCUA--AAAA -CC-G-GUC- CCAGUUCGGA 2941 U-UGGAGUC- (UGCAAC-C- C)-GACUCCA -UGAAGC-UG -GAUU-CGC- -UAGUA-AUC 3001 GC-GCA-(UC -AGCCAU)-G GCG-CGGUG- AAUAC-GU.. .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Cy.ferment 4376 bp RNA RNA 02-JUL-1998 DEFINITION Cytophaga fermentans. ACCESSION No information KEYWORDS No information. SOURCE Cytophaga fermentans. ORGANISM Cytophaga fermentans. REFERENCE 1 AUTHORS Gherna,R. and Woese,C.R. TITLE A partial phylogenetic analysis of the "Flavobacter-Bacteroides" phylum: basis for taxonomic restructuring JOURNAL Syst. Appl. Microbiol. 15, 513-521 (1992) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: M58766 ATCC 19072 (T) = NCIMB 2218 BASE COUNT 397 a 317 c 418 g 331 t 2913 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~NUU UAUACAACGA AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAU -NAAC-GC-- UAGC-GAC-A -GGC-CU--A ACAC-AUGCA A-GUC-GAGG 121 G--GU-AA-C AU-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ----UGU-AG (--CU----- ---------- ---------- 241 --------UG -)CU-ACA-- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- AUG|-AC--G ACCG-GCGC- 361 -A-CG-GG-U GCGU---AAC -GC-GUAUG- AAA--CCU-A C-CUUU---U -ACAG-G-GG 421 -AAU-AG-CC C--------- ------GG-- A(-GAAA-)U -UUGG-A--U UAAUGCC-CC 481 AU-GGU---- ---------- -------U-A UA-Y--U-UU ---ACC-(-- --------GC 541 AU-------- -)-GGU---A AA-UU----A UA--UAAA-- ---GC----- ---------- 601 --(------- ---UUCG--- ---)------ ---------| -----G--C- G--GUA---- 661 ----AAAG-- AUG---G-|U CAUGC----- -GU|----GA C--AUUA-G- CUA-G---UU 721 GG-UA-AG-( GU-AAC-GG) -C-UUACC-A A|-GGC-GA- CGA------- -----UG-UC 781 U-AG-G-GG| -U-UCU--(G -AGA)-GGAA ----GG-U-- CCC-C|N-AC -ACUGG-U-A 841 (CUGA-GA-C ACG)--GACC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 NGG-AAUAUU G-GUCAAU-- GG-CC-(GCA A)-GGC-UNA ACCA|-GCCA UGUC-GC-GU 961 G-C-AG-G-A A-GAC--G-G CC(C-UA-U- -G)GG-UUGU AAA--CUGC| NUUU-GU-AC 1021 --GG-GAA-- GA-AACG-UA --UCU-A--( -----CGAG- ---------) --UA-GA-UA 1081 ---------- -------U-U U-GC-CGGU- A-CCG-U-AC G-AA--UAAG ---------C 1141 -AUCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGNN-A) U-A-C-GGAG |-GAUG-C-- 1201 GAG-CGUUAU CC-GGAUUUA -UU-GGGU|U UAAA-GGGU- GCG-UAG-GC -G|-GA-CU- 1261 A-AU-AAG|U CAG---UGGU G-AAA-UC-U UG-CGG-C(- UC-A)A-CCG -UA-A-AAC- 1321 -UGCC-AUUG A-UAC-UGUU A-GUCUU-GA AUU-----UA G-UU-GAGGU AGG-C|GGAA 1381 UG-UGUUGU- GUA-GCG(-G UGAAA)-UGC -AU-AGAU-A UA-ACACAG- AACA-CCGA- 1441 -U-U-GC(-G AA-G)GCAG- -CUUACUA-- ---------- ---------- ---------A 1501 GCU--AU-AA UUGACG-CUG AU-G------ -------CA- C-GAAA-GC- GU-GGG-UA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA U--UA-CU-- -------C|G -UU-GU-UGG -CA------- ---------- 1681 -(AUA-CA)U ---------- ---------- ---------- ---------G -GUCAG-CGA 1741 CU--GA---- --GC-(GAA- ---A)G-CA- UUAA-GUAAU C|C|A-CCU- G-GGGAGUAC 1801 GUU-G---(G CAA)---C-A AU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CN--G 1861 C-A--CA-AG CGGAGG-AAC A-U-GU-GGU -UUAAUU-CG -(AUGAUA-C G)--CGAGGA 1921 A-CCUUA-CC UGG-AC-UUA AAU-GU|--- -------A-G ---GCUG--- -CA----UAG 1981 -AGU-A--(- GAGA-)-UAU -U-CUUU--- ---------- ---UC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GA-------- ---------| CUG-CU-UAC |---A|A--G 2161 GU-GC-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GC-C(-GUG A)-GGUGU-C 2221 GG-G-(UUAA -GU)-CCCAU AA-------- CGAG-C--GC AACCC-CU-A |-UU--GUU- 2281 AG--UUAC-C AG-CAC---- ---------- ---------- ---G(---UA ---AAG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-GA-CU-C- U-AAC-AA-G A-CU-G-CCG --GU(-G--U AA)-ACC-GC -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AG CAC-N-GC-C CUUAC-G-UC -CA--GGGC- 2821 U-ACA-CA-C GUG--UUACA AUGGC-C-GG -UA--CAAAG GGC-A-G-C- UA-CAU-G(G 2881 -CGA)CAUG- ---------- AU-GCUAA-U CCCU--AAAC -CC-G-GUC- UCAGUUCGGA 2941 U-CGGAGUC- (UGCAAC-U- C)-GACUCCG -UGAAGC-UG -GAUU-CGC- -UAGUA-AUC 3001 GC-AUA-(UC -AGCCAU)-G AUG-CGGUG- AAUAC-GUU- CCC-GGG-CN UUGUA----C 3061 ACACCGCCC- GUC-AAA--- --CCA-UGGA A--GC-CGA- GG-GU-ACCU -GAA-G-UCC 3121 G-U------- -UA-CC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGA------ G-CG-GC-CU A-GGGU-AAA ACU-GG-UA- ACU-AGGG.. 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Cy.fermen2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Cytophaga fermentans. ACCESSION No information KEYWORDS No information. SOURCE Cytophaga fermentans. ORGANISM Cytophaga fermentans. REFERENCE 1 AUTHORS Nakagawa,Y. and Yamasato,K. TITLE 16S rRNA sequencing and menaquinone analysis Phylogenetic diversity of the genus Cytophaga revealed by JOURNAL J. Gen. Microbiol. 139, 1155-1161 (1993) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: D12661|g425720 NCIMB 2218 = ATCC 19072 (T) BASE COUNT 331 a 260 c 349 g 293 t 3143 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 ....G-GG-U GCGU---AAC -GC-GUAUG- AAA--CCU-A C-CUUU---U -ACAG-G-GG 421 -AAU-AG-CC C--------- ------GG-- A(-GAAA-)U -UUGG-A--U UAAUGCC-CC 481 AU-GGU---- ---------- -------U-A UA-C--U-UU ---ACC-(-- --------GC 541 AU-------- -)-GGU---N AA-UU----A UA--UAAA-- ---GC----- ---------- 601 --(------- ---UUCG--- ---)------ ---------| -----G--C- G--GUA---- 661 ----AAAG-- AUG---G-|U CAUGC----- -GU|----GA C--AUUA-G- CUA-G---UU 721 GG-UA-AG-( GU-AAC-GG) -C-UUACC-A A|-GGC-GA- CGA------- -----UG-UC 781 U-AG-G-GG| -U-UCU--(G -AGA)-GGAA ----GG-U-- CCC-C|C-AC -ACUGG-U-A 841 (CUGA-GA-C ACG)--GACC -AGN-C-UCC -(UACG)--G GAG-GC-AN- C-A---GU-G 901 AGG-AAUAUU G-GUCAAU-- GG-CC-(GCA A)-GGC-UGA ACCA|-GCCA UGUC-GC-GU 961 G-C-AG-G-A A-GAC--G-G CC(C-UA-U- -G)GG-UUGU AAA--CUNC| UUUU-GU-UC 1021 --GG-GAA-- GA-AACG-UA --UCU-U--( -----CGAG- ---------) --UA-GA-UA 1081 ---------- -------U-U U-GC-CGGU- A-CCG-U-AC G-AA--UAAG ---------C 1141 -AUCGGCU-A ACUCC-GUG( CCA--GCANN NNCGGNN-A) U-A-C-GGAG |-GAUG-C-- 1201 GAG-CGUUAU CC-GGAUUUA -UU-GGGU|U UAAA-GGGU- GCG-UAG-GC -G|-GA-CU- 1261 A-AU-AAG|U CAG---UGGU G-AAA-UC-U UG-CGN-C(- UC-A)A-CCG -UA-A-AAC- 1321 -UGCC-AUUG A-UAC-UGUU A-GUCUU-GA AUU-----UA G-UU-GAGGU AGG-C|GGAA 1381 UG-UGUUGU- GUA-GCG(-G UGAAA)-UGC -AU-AGAU-A UA-ACACAG- AACA-CCGA- 1441 -U-U-GC(-G AA-G)GCAG- -CUUACUA-- ---------- ---------- ---------A 1501 GCU--AU-AA UUGACG-CUG AU-G------ -------CA- C-NAAA-GC- GU-GGG-UA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA U--UA-CU-- -------C|G -UU-GU-UGG -CA------- ---------- 1681 -(A-N-CA)U ---------- ---------- ---------- ---------G -GUCAG-CGA 1741 CU--GA---- --GC-(GAA- ---A)G-CA- UUAA-GUAAU C|C|N-CCU- G-GGGAGUAC 1801 GUU-G---(G CAA)---C-A AU-GAAACUC -AAA-GGAAU UG-ACGGG-N -N-N-CC--G 1861 C-A--CA-AU CGGAGG-AAC A-U-GU-GGU -UUAAUU-CG -(AUGAUA-C G)--CGAGGA 1921 A-CCUUA-CC UGG-AC-UUA AAU-GU|--- -------A-G ---GCUG--- -CA----UAG 1981 -AGU-A--(- GAGA-)-UAU -U-CUUU--- ---------- ---UC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GA-------- ---------| CUG-CU-UAC |---A|A--G 2161 GU-GC-UNCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GC-C(-GUG A)-GGUGU-U 2221 GG-G-(UUAA -GU)-CCCAU AA-------- CGAG-C--GC AACCC-CU-A |-UU--GUU- 2281 AG--UUAC-C AG-CAC---- ---------- ---------- ---G(---UA ---AAG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-GN-CN-C- U-AAC-AA-G A-CU-G-CCG --GU(-G--U AA)-ACC-GC -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AG CAC-G-GC-C CUUAC-G-UC -CA--GGGC- 2821 U-ACA-CA-C GUG--UUACA AUGGC-C-GG -UA--CAAAG GGC-A-G-C- UA-CAU-G(G 2881 -CGA)CAUG- ---------- AU-GCUNA-U CCCU--NAAC -CC-N-GUC- UCAGUUCGGA 2941 U-CGGAGUC- (UGCAAC-U- N)-GACUCCG -UGAAGC-UG -GAUU-CGC- -UAGUA-AUC 3001 GC-AUA-(UC -AGCCAU)-G AUG-CGGUG- AA........ .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Ml.agarov2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Marinilabilia agarovorans. ACCESSION No information KEYWORDS No information. SOURCE Marinilabilia agarovorans. ORGANISM Marinilabilia agarovorans. REFERENCE 1 AUTHORS Nakagawa,Y. and Yamasato,K. TITLE Phylogenetic diversity of the genus Cytophaga revealed by 16S rRNA sequencing and menaquinone analysis JOURNAL J. Gen. Microbiol. 139, 1155-1161 (1993) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: D12654|g425714 Former RDP Sids: Cy.agarov2 NCIMB 2217 (T) = DSM 2097 = ATCC 19043 NB: former name Cytophaga salmonicolor subsp. agarovorans BASE COUNT 318 a 264 c 342 g 299 t 3153 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 ....G-GG-U GAGU---AAC -GC-GUAUG- CAN--CCU-U C-CUUU---A -ACAG-G-AG 421 -AAU-AG-CC C--------- ------CC-- G(-GAAA-)C -GGGN-A--U UAAUUCU-CC 481 AU-UGU---- ---------- -------A-C UC-N--N-AG ---UUC-(-- --------NC 541 AU-------- -)-GGA---U UA-AG----A NU--UAAA-- ---GU----- ---------- 601 --(------- ---UCCG--- ---)------ ---------| -----A--C- G--GUU---- 661 ----AAAG-- AUG---G-|G CAUGC----- -GU|----GA C--AUUA-G- CCA-G---UU 721 GG-UG-GG-( GU-AAC-GG) -C-CCACC-A A|-AGC-AA- CGA------- -----UG-UC 781 U-AG-G-GG| -U-UCU--(G -AGA)-GGAA ----GG-N-- NCC-C|C-AC -ACUGG-U-A 841 (CUGA-GA-C ACG)--GNNC -AGU-C-UCC -(UACG)--G GAG-GC-AG- C-A---UU-G 901 AGG-AAUAUU G-GUCAAU-- GG-AC-(GCA A)-GUC-UNA ACCA|-GCCA UGUC-GC-GU 961 G-C-AG-G-A U-GAC--U-G CC(C-UA-U- -G)GG-UUGU AAA--CUNC| UUUU-GU-AC 1021 --GG-GAA-- GA-AAUA-UA --GCU-A--( -----CGAG- ---------) --UA-GU-UA 1081 ---------- -------U-U U-GC-CGGU- A-CCG-U-AC G-AA--UAAG ---------C 1141 -AUCGGCU-A ACUCC-GUG( CCA--GCNNC CNCNGUN-A) U-A-C-GGAG |-UAUG-C-- 1201 UAG-CGUUAU CC-GGAUUUN -UU-GGGU|U UAAA-GGGU- GCG-UAG-GC -G|-GA-AU- 1261 G-GU-AAG|U CAG---UGGU G-AAA-UC-C UG-CAG-C(- UC-A)A-CUG -UA-G-UUG- 1321 -UGCC-AUUG A-UAC-UGUC A-UUCUU-GA GUU-----CA G-AU-GAGGU AGG-C|GGAA 1381 UG-AGUAGU- GUA-GCG(-G UGAAA)-UGC -AU-AGAU-A UU-ACUCAG- AACU-CCAA- 1441 -U-U-GC(-G AA-G)GCAG- -CUUACUA-- ---------- ---------- ---------A 1501 ACU--GA-CA CUGACG-CUG AA-G------ -------CN- C-GAAA-GC- GU-GGG-UA- 1561 UC-AAA-CA- -GG(AUUA-G AUUC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA U--UA-CU-- -------G|G -UU-GU-UUG -CG------- ---------- 1681 -(AUU-CU)C ---------- ---------- ---------- ---------A -GCAAG-CGA 1741 CU--GA---- --GC-(GAA- ---A)G-CA- UUAA-GUAAU C|C|U-CCU- G-GGGAGUAC 1801 GUC-G---(G CAA)---C-G AU-GAAACUC -AAA-GGAAU UG-ACGGG-N -N-C-CC--G 1861 C-A--CA-AG CGGUGG-ANC A-U-GU-GGU -UUAAUU-CG -(AUGAUA-C G)--CGAGGA 1921 A-CCUUA-CC UGG-GU-UUU AAU-GG|--- -------G-N ---AGUG--- -AU----UGG 1981 -GGN-A--(- GAAA-)-UNC -C-NNNU--- ---------- ---UC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GA-------- ---------| CUC-UU-UUC |---A|A--G 2161 GU-NC-UACA UG|G-UUG-- UCG-UCU|-G C-U---CG-U |GC-C(-GUG A)-GGUGU-U 2221 AG-G-(UUAA -GU)-CCUAU AA-------- CGAG-C--GC AACCC-CU-G |-UU--GUU- 2281 AG--UUGC-C AG-CNA---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----UUG|G 2701 G-AA-CU-C- U-AUC-AA-G A-CU-G-CCG --GU(-G--C AN)-ACC-GC -GAGG-A-AG 2761 G-UG-GGG-N UG-ACG--UC -A-AAUC-AU CAC-G-GC-C CUUAC-A-UC -CA--GGGC- 2821 U-ACA-CA-C GUG--UUACA AUGGC-A-GG -UA--CAAAG GGC-A-G-C- UA-CAC-A(G 2881 -CUA)UGUG- ---------- AU-GCUAA-U CUCG--AAAA -CC-U-NUC- CCAGUUCGGA 2941 U-UGAAGUC- (UGCANC-C- C)-GACUUCA -UGAAGC-UG -GNAU-CGC- -UAGUA-AUC 3001 GC-GCA-(UC -AGCCAU)-G GCG-CGGUG- AA........ .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Ml.salmoni 4376 bp RNA RNA 02-JUL-1998 DEFINITION Marinilabilia salmonicolor. ACCESSION No information KEYWORDS No information. SOURCE Marinilabilia salmonicolor. ORGANISM Marinilabilia salmonicolor. REFERENCE 1 AUTHORS Nakagawa,Y. and Yamasato,K. TITLE Phylogenetic diversity of the genus Cytophaga revealed by 16S rRNA sequencing and menaquinone analysis JOURNAL J. Gen. Microbiol. 139, 1155-1161 (1993) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: D12672|g425731 Former RDP Sids: Cy.sal2216 NCIMB 2216 (T) = DSM 6480 = ATCC 19041 NB: former name Cytophaga salmonicolor BASE COUNT 336 a 267 c 348 g 280 t 3145 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 ....G-GG-U GAGU---AAC -GC-GUAUG- CAA--CCU-U C-CUUU---A -ACAG-G-AG 421 -AAU-AG-CC C--------- ------CC-- G(-GAAA-)C -GGGN-A--U UAAUGCU-CC 481 AU-UGU---- ---------- -------A-C UC-U--A-AG ---UUC-(-- --------GC 541 AU-------- -)-GGA---U UA-AG----A GU--UAAA-- ---GU----- ---------- 601 --(------- ---UCCG--- ---)------ ---------| -----A--C- G--GUU---- 661 ----AAAG-- AUG---G-|G CAUGC----- -GU|----GA C--AUUA-G- CCA-G---UU 721 GG-UG-GG-( GU-AAC-GG) -C-CCACC-A A|-AGC-AA- CGA------- -----UG-UC 781 U-AG-G-GG| -U-UCU--(G -AGA)-GGAA ----GG-N-- NCC-C|C-AC -ACUGG-U-A 841 (CUGA-GA-C ACG)--GNCC -AGN-C-UCC -(UACG)--G GAG-GC-AN- C-A---UU-G 901 AGG-AAUAUU G-GUCAAU-- GG-AC-(GCA A)-GUC-UNA ACCA|-GCCA UGUC-GC-GU 961 G-C-AG-G-A U-GAC--U-G CC(C-UA-U- -G)GG-UUGU AAA--CUNC| UUUU-GU-NC 1021 --GG-GAA-- GA-AAUA-UA --GCU-A--( -----CGAG- ---------) --UA-GU-UA 1081 ---------- -------U-U U-GC-CGGU- A-CCG-U-AC G-AA--UAAG ---------C 1141 -AUCGGCU-A ACUCC-GUG( CCA--GCANC CNCGGUN-A) U-A-C-GGAG |-GAUG-C-- 1201 UAG-CGUUAU CC-GGAUUUA -UU-GGGU|U UAAA-GGGU- GCG-UAG-GC -G|-GA-AU- 1261 G-GU-AAG|U CAG---UGGU G-AAA-UC-C UG-CAG-C(- UC-A)A-CUG -UA-G-UUG- 1321 -UGCC-AUUG A-UAC-UGUC A-UUCUU-GA GUA-----CA G-AU-GANGU AGG-C|GGAA 1381 UG-AGUAGU- GUA-GCG(-G UGAAA)-UGC -AU-AGAU-A UU-ACUCAG- AACA-CCAA- 1441 -U-U-GC(-G AA-G)GCAG- -CUUACUA-- ---------- ---------- ---------A 1501 ACU--GA-CA CUGACG-CUG AA-G------ -------CA- C-GAAA-GC- GU-GGG-UA- 1561 UC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA U--UA-CU-- -------G|G -UU-GU-UUG -CG------- ---------- 1681 -(AUN-CN)C ---------- ---------- ---------- ---------A -GCAAG-CGA 1741 CU--GA---- --GC-(GAA- ---A)G-CA- UUAA-GUAAU C|C|N-CCU- G-GGGAGUAC 1801 GNC-G---(G CAA)---C-G AU-GAAACUC -AAA-GGAAU UG-ACGGG-N -N-C-CC--G 1861 C-A--CA-AG CGGUGG-AAC A-U-GU-GGU -UUAAUU-CG -(AUGAUA-C G)--CGAGGA 1921 A-CCUUA-CC UGG-GU-UUA AAU-GG|--- -------G-A ---AGUG--- -AN----NGG 1981 -GGU-A--(- GAAA-)-UAC -C-NNNU--- ---------- ---UC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GA-------- ---------| CAC-UU-UAC |---A|A--G 2161 GU-GC-UACA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GC-C(-GUG A)-GGUGC-C 2221 GG-G-(UUAA -GU)-CCCAU AA-------- CGAG-C--GC AACCC-CU-G |-UU--GUU- 2281 AG--UUAC-C AG-CAN---- ---------- ---------- ---A(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-GA-CU-C- U-AAC-AA-G A-CU-G-CCG --GU(-G--U AA)-CCU-GC -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAC-G-GC-C CUUAC-A-UC -CA--GGGC- 2821 U-ACA-CA-C GUG--UUACA AUGGC-A-GG -UA--CAAAG GGC-A-G-C- UA-CAC-A(G 2881 -CGA)UGUG- ---------- AU-GCUAA-U CUCG--AAAA -CC-N-NUC- CCAGUUCGGA 2941 U-UGAAGUC- (UGCAAC-C- C)-GACUUCA -UGAAGC-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-GCA-(UC -AGCCAU)-G GCG-CGGUG- AA........ .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Ml.agarovo 4376 bp RNA RNA 02-JUL-1998 DEFINITION Marinilabilia agarovorans. ACCESSION No information KEYWORDS No information. SOURCE Marinilabilia agarovorans. ORGANISM Marinilabilia agarovorans. REFERENCE 1 AUTHORS Woese,C.R. TITLE A phylogenetic analysis of the flavobacterial phylum JOURNAL Unpublished (1991) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: M62422 Former RDP Sids: Cy.salmaga Cy.agarovo ATCC 19043 = DSM 2097 = NCIMB 2217 (T) NB: former name Cytophaga salmonicolor subsp. agarovorans -> Cytophaga agarovorans BASE COUNT 398 a 324 c 413 g 319 t 2922 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~NUU CCUACAACGA AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAU -GAAC-GC-- UAGC-GAC-A -GGC-CU--A ACAC-AUGCA A-GUC-GAGG 121 G--GU-AA-C AU-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---UAGU-AG (--CU----- ---------- ---------- 241 --------UG -)CU-ACUA- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- AUG|-AC--G ACCG-GCGC- 361 -A-CG-GG-U GAGU---AAC -GC-GUAUG- CAA--CCU-U C-CUUU---A -ACAG-G-AG 421 -AAU-AG-CC C--------- ------CC-- G(-GAAA-)C -GGGN-A--U UAAUGCU-CC 481 AU-NGU---- ---------- -------A-C UC-U--A-AG ---UCC-(-- --------GC 541 AU-------- -)-GGA---U UA-AG----A GU--UAAA-- ---GU----- ---------- 601 --(------- ---UCCG--- ---)------ ---------| -----A--C- G--GUU---- 661 ----AAAG-- AUG---G-|G CAUGC----- -GU|----GA C--AUUA-G- CCA-G---UU 721 GG-CG-GG-( GU-AAC-GG) -C-CCACC-A A|-AGC-AA- CGA------- -----UG-UC 781 U-AG-G-GG| -U-UCU--(G -AGA)-GGAA ----GG-U-- CCC-C|C-AC -ACUGG-U-A 841 (CUGA-GA-C ACG)--GACC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 AGG-AAUAUU G-GUCAAU-- GG-AC-(GCA A)-GUC-UGA ACCA|-GCCA UGUC-GC-GU 961 G-C-AG-G-A U-GAC--U-G CC(C-UA-U- -G)GG-UUGU AAA--CUGC| UUUU-GU-AC 1021 --GG-GAA-- GA-AAUA-UA --GCU-A--( -----CGAG- ---------) --UA-GU-UA 1081 ---------- -------U-U U-GC-CGGU- A-CCG-U-AC G-AA--UAAG ---------C 1141 -AUCGGCU-A ACUCC-GUG( CCA--GCAGC CNCGGNN-A) U-A-C-GGAG |-NAUG-C-- 1201 NAG-CGUUAU CC-GGAUUUA -UU-GGGU|U UAAA-GGGU- GCG-UAG-GC -G|-NA-AU- 1261 G-GU-AAG|U CAG---UGGU G-AAA-UC-C UG-CAG-C(- UC-A)A-CUG -UA-G-UUG- 1321 -UGCC-AUUG A-UAC-UGUC A-UUCUU-GA GUA-----CA G-AU-GAGGU AGG-C|GGAA 1381 UG-AGUAGU- GUA-GCG(-G UGAAA)-UGC -AU-AGAU-A UU-ACUCAG- AACA-CCAA- 1441 -U-U-GC(-G AA-G)GCAG- -CUUACUA-- ---------- ---------- ---------A 1501 ACU--GA-CA CUGACG-CUG AA-G------ -------CA- C-NAAA-GC- GU-GGG-UA- 1561 UC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA U--UA-CU-- -------G|G -UU-GU-UUG -CG------- ---------- 1681 -(AUA-CA)C ---------- ---------- ---------- ---------A -GCAAG-CGA 1741 CU--GA---- --GC-(GAA- ---A)G-CA- UUAA-GUAAU C|C|A-CCU- G-GGGAGUAC 1801 GUC-G---(G CAA)---C-G AU-GAAACUC -AAA-GGAAU UG-ACGGG-N -N-C-CN--G 1861 C-A--CA-AG CGGUGG-AAC A-U-GU-GGU -UUAAUU-CG -(AUNNUA-C G)--CGAGGA 1921 A-CCUUA-CC UGG-GU-UUA AAU-GG|--- -------G-A ---AGUG--- -AC----AGG 1981 -GGU-A--(- GAAA-)-UAC -C-NUUU--- ---------- ---UC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GA-------- ---------| CAC-UU-UUC |---A|A--G 2161 GU-GC-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GC-C(-GUG A)-GGUGU-C 2221 GG-G-(UUAA -GU)-CCCAU AA-------- CGAG-C--GC AACCC-CU-G |-UU--GUU- 2281 AG--UUAC-C AG-CAC---- ---------- ---------- ---A(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-GA-CU-C- U-AAC-AA-G A-CU-G-CCG --GU(-G--U AA)-ACC-GC -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AG CAC-N-GC-C CUUAC-A-UC -CA--GGGC- 2821 U-ACA-CA-C GUG--UUACA AUGGC-A-GG -UA--CAAAG GGC-A-G-C- UA-CAC-A(G 2881 -CGA)UGUG- ---------- AU-GCUAA-U CUCG--AAAA -CC-U-GUC- CCAGUUCGGA 2941 U-UGAAGUC- (UGCAAC-C- C)-GACUUCA -UGAAGC-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-GCA-(UC -AGCCAU)-G GCG-CGGUG- AAUAC-GUU- CCC-NGG-CN NUGUA----C 3061 ACACCGCNC- GNC-AAG--- --CCA-UGGA A--GC-CGG- GA-GU-ACCU -GAA-G-UAU 3121 G-U------- -AA-CC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGA------ G-CG-UC-CU A-GGGU-AAA ACU-GG-UG- ACU-GGG... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Bac.splanc 4376 bp RNA RNA 02-JUL-1998 DEFINITION Bacteroides splanchnicus. ACCESSION No information KEYWORDS No information. SOURCE Bacteroides splanchnicus. ORGANISM Bacteroides splanchnicus. REFERENCE 1 AUTHORS Paster,B.J., Dewhirst,F.E., Olsen,I. and Fraser,G.J. TITLE Phylogeny of Bacteroides, Prevotella, and Porphyromonas spp. and related bacteria JOURNAL J. Bacteriol. 176, 725-732 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: L16496 NCTC 10825 (T) = ATCC 29572 biol_source= abdominal abscess, feces BASE COUNT 383 a 314 c 429 g 332 t 2918 others ORIGIN 1 .......... .......... .......... ..UNCUAUGA AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAU -NAAC-GC-- UAGC-GAC-A -GGC-UU--A ACAC-AUGCA A-GUC-GAGG 121 G--GC-A--U CA-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --UGAGG-UA (--GC----- ---------- ---------- 241 --------AA -)UA-CCUUG ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- AUG|-GC--G ACCG-GCGC- 361 -A-CG-GG-U GCGU---AAC -GC-GUAUG- CAA--CCU-G C-CUGA---U -ACCG-G-GG 421 -UAU-AG-CC C--------- ------AU-- G(-GAAA-)C -GUGG-A--U UAACACC-CC 481 AU-AGU---- ---------- -------A-C UU-U--U-AU ---CCU-(-- --------GC 541 AU-------- -)-GGG---A UG-GG----A GU--UAAA-- ---UG----- ---------- 601 --(------- ---UUYA--- ---)------ ---------| --------A- G--GUA---- 661 ----UCGG-- AUG---G-|G CAUGC----- -GU|----CC U--AUUA-G- UUA-G---UU 721 GG-CG-GG-( GU-AAC-AG) -C-CCACC-A A|-GAC-GA- UGA------- -----UA-GG 781 U-AG-G-GG| -U-UCU--(G -AGA)-GGAA ----GG-U-- CCC-C|C-AC -AUUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AAA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 AGG-AAUAUU G-GUCAAU-- GG-AC-(GUA A)-GUC-UGA ACCA|-GCCA AGUC-GC-GU 961 G-A-GG-G-A A-GAC--U-G CC(C-UN-U- -G)GG-UUGU AAA--CCNC| UUUU-AU-AA 1021 --GG-GAA-- GA-AUAA-GU --UCU-A--( -----CGUG- ---------) --UA-GA-AU 1081 ---------- -------G-A U-GC-CUGU- A-CCU-U-AU G-AA--UAAG ---------C 1141 -AUCGGCU-N ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GAUG-C-- 1201 GAG-CGUUAU CC-GGAUUUA -UU-GGGU|U UAAA-GGGU- GCG-UAG-GC -G|-GU-UU- 1261 A-UU-AAG|U UAG---UGGU U-AAA-UA-U UU-GAG-C(- UC-A)A-CUC --A-A-UUG- 1321 -UGCC-AUUA A-UAC-UGGU A-AACUG-GA GUA-----CA G-GC-GAGGU AGG-C|GGAA 1381 UA-AGUUAA- GUA-GCG(-G UGAAA)-UGC -AU-AGAU-A UA-ACUUAG- AACU-CCGA- 1441 -U-U-GC(-G AA-G)GCAG- -CUUACCA-- ---------- ---------- ---------G 1501 ACU--GU-AA CUGACG-CUG AU-G------ -------CA- C-GAGA-GC- GU-GGG-UA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGC U--CA-CU-- -------N|G -UU-CU-SUG -CG------- ---------- 1681 -(AUA-UA)U ---------- ---------- ---------- ---------U -GUACG-GGA 1741 UU--AA---- --GC-(GAA- ---A)G-UA- UUAA-GUGAG C|C|A-CCU- G-GGGAGUAC 1801 GUC-G---(G CAA)---C-G AU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGAGG-AAC A-U-GU-GGU -UUAAUU-CG -(AUGAUA-C G)--CGAGGA 1921 A-CCUUA-CC UGG-GU-UUA AAU-GG|--- -------G-A ---AAUG--- -CC----GUA 1981 -UUU-G--(- GAAA-)-CAG -A-UAUU--- C--------- ---UC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GA-------- -----G---| CGU-UU-UUC |---R|A--G 2161 GU-GC-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GC-C(-GUG A)-GGUGU-C 2221 GG-G-(UUAA -GU)-CCCAU AA-------- CGAG-C--GC AACCC-UU-A |-CC--GUU- 2281 AG--UUGC-U AG-CAU---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----AUG|A 2701 G-CA-CU-C- U-AAC-GG-G A-CU-G-CCA --CC(-G--U AA)-GGU-GA -GAGG-A-AG 2761 G-CG-GGG-A UG-ACG--UC -A-AAUC-AG CAC-G-GC-C CUUAC-A-CC -CA--GGGC- 2821 U-ACA-CA-C GUG--UUACA AUGGC-C-GG -UA--CAGAG GGC-C-G-C- UA-CCA-G(G 2881 -UGA)CUGG- ---------- AU-GCCAA-U CUCA--AAAG -CC-G-GUC- GUAGUUCGGA 2941 U-UGGAGUC- (UGUAAC-C- C)-GACUCCA -UGAAGU-UG -GAUU-CGC- -UAGUA-AUC 3001 GC-GCA-(UC -AGCCAU)-G GCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-AAG--- --CCA-UGGA A--GC-CGG- GG-GU-GCCU -GAA-G-UCC 3121 G-U------- -AA-CC---- ---------- ---------- -----(---- -GCGA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGA------ U-CG-GC-CU A-GGGC-AAA ACU-GG-UA- AC........ 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS 2.7.1.1.2 4376 bp RNA RNA 09-JAN-1999 DEFINITION 2.7.1.1.2 BAC.DISTASONIS_SUBGROUP. ACCESSION No information KEYWORDS No information. SOURCE 2.7.1.1.2 BAC.DISTASONIS_SUBGROUP. ORGANISM 2.7.1.1.2 BAC.DISTASONIS_SUBGROUP. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 0 a 0 c 0 g 0 t 4376 others ORIGIN 1 x~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~-- ------~~~~ 541 ~~~~~~---- -~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~---~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- 1681 -(~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- -------~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~----~~~ 1981 ~~~~-~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~--- --~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~------ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~---~~ ---~~~--~~ 2341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- 3181 ---------- ---------- ---------- ------~)~~ ~~~~~~~~~~ ~~~~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Ppm.gingiv 4376 bp RNA RNA 02-JUL-1998 DEFINITION Porphyromonas gingivalis. ACCESSION No information KEYWORDS No information. SOURCE Porphyromonas gingivalis. ORGANISM Porphyromonas gingivalis. REFERENCE 1 AUTHORS Paster,B.J., Dewhirst,F.E., Olsen,I. and Fraser,G.J. TITLE Phylogeny of Bacteroides, Prevotella, and Porphyromonas spp. and related bacteria JOURNAL J. Bacteriol. 176, 725-732 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: L16492 ATCC 33277 (T) = DSM 20709 biol_source= human gingival sulcus BASE COUNT 377 a 334 c 443 g 313 t 2909 others ORIGIN 1 .......... .......... .......... ...ACAGUGG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAU -NAAC-GC-- UAGC-GAU-A -GGC-UN--A ACAC-AUGCA A-GUC-GAGG 121 G--GC-AG-C AU-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -GAUCUU-AG (--CU----- ---------- ---------- 241 --------UG -)CU-AAGGU U--------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- AUG|-GC--G ACCG-GCGC- 361 -A-CG-GG-U GCGU---AAC -GC-GUAUG- CAA--CUU-G C-CUUA---C -AGAG-G-GG 421 -GAU-AA-CC C--------- ------GU-- U(-GAAA-)G -ACGG-A--C UNAAACC-GC 481 AU-ACA---- ---------- -------C-U UG-U--A-UU ---AUU-(-- --------GC 541 AU-------- -)-GAU---A UU-AC----A AG--GAAA-- ---UA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--A- G--CUG---- 661 ----UAAG-- AUA---G-|G CAUGC----- -GU|----CC C--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAC-GG) -C-UCACC-A A|-GGC-GA- CGA------- -----UG-GG 781 U-AG-G-GG| -A-ACU--(G -AGA)-GGUU ----UA-U-- CCC-C|C-AC -ACUGG-U-A 841 (CUGA-GA-C ACG)--GACC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 AGG-AAUAUU G-GUCAAU-- GG-GC-(GAG A)-GCC-UGA ACCA|-GCCA AGUC-GC-GU 961 G-A-AG-G-A A-GAC--A-G UC(C-UA-A- -G)GA-UUGU AAA--CUUC| UUUU-AU-AC 1021 --GG-GAA-- UA-ACGG-GC --GAU-A--( -----CGAG- ---------) --UA-UU-GC 1081 ---------- -------A-U U-GA-AUGU- A-CCG-U-AA G-AA--UAAG ---------C 1141 -AUCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUN-A) U-A-C-GGAG |-NAUG-C-- 1201 NAG-CGUUAU CC-GGAUUUA -UU-GGGU|U UAAA-GGGU- GCG-UAG-GU -U|-GU-UC- 1261 G-GU-AAG|U CAG---CGGU G-AAA-CC-U GA-GCG-C(- UC-A)A-CGU -UC-A-GCC- 1321 -UGCC-GUUG A-AAC-UGCC N-GGCUU-GA GUU-----CA G-CG-GCGGC AGG-C|GGAA 1381 UU-CGUGGU- GUA-GCG(-G UGAAA)-UGC -AU-AGAU-A UC-ACGAGG- AACU-CCGA- 1441 -U-U-GC(-G AA-G)GCAG- -CUUGCCA-- ---------- ---------- ---------U 1501 ACU--GC-GA CUGACA-CUG AA-G------ -------CA- C-GAAG-GC- GU-GGG-UA- 1561 UC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CA-GU--A 1621 AAC-G-AUGA U--UA-CU-- -------A|G -GA-GU-UUG -CG-A----- ---------- 1681 -(UAU-AC)C ---------- ---------- ---------- --------GU -CAAGC-UUC 1741 CA--CA---- --GC-(GAA- ---A)G-CG- UUAA-GUAAU C|C|A-CCU- G-GGGAGUAC 1801 GCC-G---(G CAA)---C-G GU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGAGG-AAC A-U-GU-GGU -UUAAUU-CG -(AUGAUA-C G)--CGAGGA 1921 A-CCUUA-CC CGG-GA-UUG AAA-UG|--- -------U-A ---GAUG--- -AC----UGA 1981 -UGG-U--(- GAAA-)-ACC -G-UC-U--- U--------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- -----G---| CUU-CU-AUG |---U|A--G 2161 GU-GC-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GC-C(-GUG A)-GGUGU-C 2221 GG-C-(UUAA -GU)-GCCAU AA-------- CGAG-C--GC AACCC-AC-A |-UC--GGU- 2281 AG--UUGC-U AA-CAG---- ---------- ---------- ---U(---UU ---UCG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CUG|A 2701 G-GA-CU-C- U-ACC-GA-G A-CU-G-CCG --UC(-G--U AA)-GGC-GU -GAGG-A-AG 2761 G-UG-UGG-A UG-ACG--UC -A-AAUC-AG CAC-G-GC-C CUUAC-A-UC -CG--GGGC- 2821 G-ACA-CA-C GUG--UUACA AUGGG-A-GG -GA--CAAAG GGC-A-G-C- UA-CCG-G(G 2881 -CGA)CCGG- ---------- AU-GCGAA-U CUCU--AAAC -CC-U-UCC- CCAGUUCGGA 2941 U-CGGAGUC- (UGCAAC-U- C)-GACUCCG -UGAAGC-UG -GAUU-CGC- -UAGUA-AUC 3001 GC-GCA-(UC -AGCCAU)-G GCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-AAG--- --CCA-UGGG A--GU-CGG- GG-GU-ACCU -GAA-G-GGC 3121 G-U------- -AA-CC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGG------ G-CG-CA-CU A-GGGU-AAU ACC-GG-UG- ACU....... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Ppm.gingi2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Porphyromonas gingivalis. ACCESSION No information KEYWORDS No information. SOURCE Porphyromonas gingivalis. ORGANISM Porphyromonas gingivalis. REFERENCE 1 AUTHORS Gersdorf,H., Preisler,S., Choi,B.K. and Goebel,U. JOURNAL Unpublished (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X73964|g509140 DSM 20709 = ATCC 33277 (T) biol_source= human gingival sulcus BASE COUNT 372 a 332 c 441 g 307 t 2924 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .AGC-GAU-A -GGC-UU--A ACAC-AUGCA A-GUC-GAGG 121 G--GC-AG-C AU-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -GAUCUU-AG (--CU----- ---------- ---------- 241 --------UG -)CU-AAGGU C--------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- AUG|-GC--G ACCG-GCGC- 361 -A-CG-GG-U GCGU---AAC -GC-GUAUG- CAA--CUU-G C-CUUA---C -AGAG-G-GG 421 -GAU-AA-CC C--------- ------GU-- U(-GAAA-)G -ACGG-A--C UAAAACC-GC 481 AU-ACA---- ---------- -------C-U UG-U--A-UU ---AUU-(-- --------GC 541 AU-------- -)-GAU---A UU-AC----A AG--GAAA-- ---UA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--A- G--CUG---- 661 ----UAAG-- AUA---G-|G CAUGC----- -GU|----CC C--AUUA-G- CUG-G---UU 721 GG-UG-AG-( GU-AAC-GG) -C-UCACC-A A|-GGC-GA- CGA------- -----UG-GG 781 U-AG-G-GG| -A-ACU--(G -AGA)-GGUU ----UA-U-- CCC-C|C-AC -ACUGG-U-A 841 (CUGA-GA-C ACG)--GACC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 AGG-AAUAUU G-GUCAAU-- GG-GC-(GAG A)-GCC-UGA ACCA|-GCCA AGUC-GC-GU 961 G-A-AG-G-A A-GAC--A-G UC(C-UA-A- -G)GA-UUGU AAA--CUUC| UUUU-AU-AC 1021 --GG-GAA-- UA-ACGG-GC --GAU-A--( -----CGAG- ---------) --UA-UU-GC 1081 ---------- -------A-U U-GA-AUGU- A-CCG-U-AA G-AA--UARG ---------C 1141 -AUCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GAUG-C-- 1201 GAG-CGUUAU CC-GGAUUUA -UU-GGGU|U UAAA-GGGU- GCG-UAG-GU -U|-GU-UC- 1261 G-GU-AAG|U CAG---CGGU G-AAA-CC-U GA-GCG-C(- UC-A)A-CGU -UC-A-GCC- 1321 -UGCC-GUUG A-AAC-UGCC G-GGCUU-GA CUU-----CA G-UG-GCGGC AGG-C|GGAA 1381 UU-CGUGGU- GUA-GCG(-G UGAAA)-UGC -AU-AGAU-A UC-ACGAGG- AACU-CCGA- 1441 -U-U-GC(-G AA-G)GCAG- -CUUGCCA-- ---------- ---------- ---------U 1501 ACU--GC-GA CUGACA-CUG AA-G------ -------CA- C-GAAG-GC- GU-GGG-UA- 1561 UC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CA-GU--A 1621 AAC-G-AUGA U--UA-CU-- -------A|G -GA-GU-UUG -CG-A----- ---------- 1681 -(UAU-AC)C ---------- ---------- ---------- --------GU -CAAGC-UUC 1741 CA--CA---- --GC-(GAA- ---A)G-CG- UUAA-GUAAU C|C|A-CCU- G-GGGAGUAC 1801 GCC-G---(G CAA)---C-G GU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGAGG-AAC A-U-GU-GGU -UUAAUU-CG -(AUGAUA-C G)--CGAGGA 1921 A-CCUUA-CC CGG-GA-UUG AAA-UG|--- -------U-A ---GAUG--- -AC----GGA 1981 -UGG-U--(- GAAA-)-ACC -G-UCUU--- C--------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- -----G---| CUU-CU-AUG |---U|A--G 2161 GU-GC-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GC-C(-GUG A)-GGUGU-C 2221 GG-C-(UUAA -GU)-GCCAU AA-------- CGAG-C--GC AACCC-AC-A |-UC--GGU- 2281 AG--UUGC-U AA-CAG---- ---------- ---------- ---U(---UU ---UCG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CUG|A 2701 G-GA-CU-C- U-ACC-GA-G A-CU-G-CCG --UC(-G--U AA)-GGC-GU -GAGG-A-AG 2761 G-UG-UGG-A UG-ACG--UC -A-AAUC-AG CAC-G-GC-C CUUAC-A-UC -CG--GGGC- 2821 G-ACA-CA-C GUG--UUACA AUGGG-A-GG -GA--CAAAG GGC-A-G-C- UA-CCG-G(G 2881 -CGA)CCGG- ---------- AU-GCGAA-U CUCU--AAAC -CC-U-UCC- CCAGUUCGGA 2941 U-CGGAGUC- (UGCAAC-U- C)-GACUCCG -UGAAGC-UG -GAUU-CGC- -UAGUA-AUC 3001 GC-GCA-(UC -AGCCAU)-G GCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-AAG--- --CCA-UGGG A--GU-CGG- GG-GU-ACCU -GAA-G-GGC 3121 G-U------- -AA-CC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGG------ --CG-CA-CU A-GGGU-AAU ACC-GG-UG- ACU-GGGG-C 3301 U---AAGUC- GUAA-C.... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Ppm.cansul 4376 bp RNA RNA 02-JUL-1998 DEFINITION Porphyromonas cansulci. ACCESSION No information KEYWORDS No information. SOURCE Porphyromonas cansulci. ORGANISM Porphyromonas cansulci. REFERENCE 1 AUTHORS Collins,M.D., Love,D.N., Karjalainen,J., Kanervo,A., Forsblom,B., Willems,A., Stubbs,S., Sarkiala,E., Bailey,G.D., Wigney,D.I. and Jousimies-Somer,H. TITLE Phylogenetic analysis of members of the genus Porphyromonas and description of Porphyromonas cangingivalis sp. nov. and Porphyromonas cansulci sp. nov JOURNAL Int. J. Syst. Bacteriol. 44, 674-679 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X76260|g577601 BASE COUNT 387 a 329 c 444 g 321 t 2895 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......GAU -GAAC-GC-- UAGC-GAU-A -GGC-UU--A ACAC-AUUCA A-GUC-GAGG 121 G--GC-AU-C GG-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -GUAAGU-AG (--CU----- ---------- ---------- 241 --------UG -)CU-ACUUA U--------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- CCG|-GC--G ACCG-GCGC- 361 -A-CG-GG-U GCGU---AAC -GC-GUAUG- CAA--CCU-A C-CUGU---C -AGAC-U-GG 421 -GAU-AA-CC C--------- ------GG-- U(-GAAA-)G -CCGG-A--C UAAUACU-GG 481 AU-ACA---- ---------- -------C-U UA-U--U-CU ---UCU-(-- --------GC 541 AU-------- -)-GGG---G GG-AU----A AG--GAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--U- A--CUG---- 661 ----ACAG-- AUG---G-|G CAUGC----- -GU|----UC C--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAC-GG) -C-UCACC-A A|-GGC-GA- CGA------- -----UG-GA 781 U-AG-G-GG| -A-ACU--(G -AGA)-GGUU ----UA-U-- CCC-C|C-AC -ACUGG-U-A 841 (CUGA-GA-C ACG)--GACC -AGA-C-UCC -(UACG)--G GAG-NC-AG- C-A---GU-G 901 AGG-AAUCUU G-GUCAAU-- GG-GC-(GAG A)-GCC-UGA ACCA|-GCCA AGUC-GC-GU 961 G-A-GG-G-C A-GAC--G-G UC(C-UA-A- -G)GA-UUGU AAA--CCUC| UUUU-UC-AG 1021 --GG-GAG-- UA-AAAU-UA --GAU-A--( -----CGCG- ---------) --UA-UU-UA 1081 ---------- -------A-U U-GC-AAGU- A-CCC-U-GC G-AA--UAAG ---------C 1141 -AUCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GAUG-C-- 1201 GAG-CGUUAU CC-GGAUUUA -UU-GGGU|U UAAA-GGGU- GCG-UAG-GU -U|-GU-UU- 1261 U-GU-AAG|U CAG---UGGU G-AAA-CC-U GG-GGG-C(- UC-A)A-CCC -CU-A-GCA- 1321 -UGCC-GUUG A-AAC-UGCA G-AGCUA-GA GAU-----UA G-AA-UAGGU AGG-C|GGAA 1381 UG-UAUGGU- GUA-GCG(-G UGAAA)-UGC -AU-AGAU-A UC-AUACAG- AACC-CCGA- 1441 -U-U-GC(-G AA-G)GCAG- -CUUACCG-- ---------- ---------- ---------G 1501 GCU--AU-AU CUGACA-CUG AA-G------ -------CA- C-GAAA-GC- GU-GGG-UA- 1561 UC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA U--UA-CU-- -------C|G -GA-GU-AUG -CG-A----- ---------- 1681 -(UAU-GA)G ---------- ---------- ---------- --------UG -UAUGC-UUC 1741 UU---A---- --GC-(GAA- ---A)G-CG- UUAA-GUAAU C|C|A-CCU- G-GGGAGUAC 1801 GUC-G---(G CAA)---C-G AU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGAGG-AAC A-U-GU-GGU -UUAAUU-CG -(AUGAUA-C G)--CGAGGA 1921 A-CCUUA-CC CGG-GA-UUG AAA-UA|--- -------U-A ---GAUG--- -AC----AGG 1981 -CAG-C--(- GAGA-)-GUU -G-UUAU--- C--------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- -----G---| CAU-CU-AUG |---U|A--G 2161 GU-GC-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GC-C(-GUG A)-GGUGU-C 2221 GG-C-(UUAA -GU)-GCCCU AA-------- CGAG-C--GC AACCC-AC-A |-UU--AUU- 2281 AG--UUAC-U AA-CAG---- ---------- ---------- ---G(---UU ---AAG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CUG|A 2701 G-GA-CU-C- U-AAU-AA-G A-CU-G-CCG --GC(-G--U AA)-GCC-GU -GAGG-A-AG 2761 G-UG-UGG-A UG-ACG--UC -A-AAUC-AG CAC-G-GC-C CUUAC-A-UC -CG--GGGC- 2821 G-ACA-CA-C GUG--UUACA AUGGU-A-GG -GA--CAAAG GGC-A-G-C- UA-CCG-G(G 2881 -CGA)CCGG- ---------- AU-GCGAA-U CUCC--AAAC -CC-U-AUC- CCAGUUCGGA 2941 U-CGGAGUC- (UGCAAC-U- C)-GACUCUG -UGAAGC-UG -GAUU-CGC- -UAGUA-AUC 3001 GC-GCA-(UC -AGCCAU)-G GCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-AAG--- --CCA-UGGG A--GU-CGG- GN-GU-ACCU -GAA-G-UAC 3121 G-U------- -AA-CC---- ---------- ---------- -----(---- -GCGA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGG------ G-CG-UC-CU A-GGGU-AAU ACC-GG-UG- ACU-GGGG-C 3301 U---AAGUC- GUAA-CAAGG UAGCC-GUAC C(GGA-A)GG .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Ppm.salvos 4376 bp RNA RNA 02-JUL-1998 DEFINITION Porphyromonas salivosa. ACCESSION No information KEYWORDS No information. SOURCE Porphyromonas salivosa. ORGANISM Porphyromonas salivosa. REFERENCE 1 AUTHORS Paster,B.J., Dewhirst,F.E., Olsen,I. and Fraser,G.J. TITLE Phylogeny of Bacteroides, Prevotella, and Porphyromonas spp. and related bacteria JOURNAL J. Bacteriol. 176, 725-732 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: L26103 BASE COUNT 379 a 309 c 437 g 318 t 2933 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~ACAGAGA AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAU -NAAC-GC-- UAGC-GAU-A -GGC-UN--A ACAC-AUGCA A-GUC-GAGG 121 G--GC-AG-C AU-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -GGUCUN-AG (--CU----- ---------- ---------- 241 --------UG -)CU-AAGAC U--------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- AUG|-GC--G ACCG-GCGC- 361 -A-CG-GG-U GCGU---AAC -GC-GUAUG- UAA--CUU-G C-CUGG---U -AGAA-A-GG 421 -GAU-AA-CC C--------- ------GG-- U(-GAAA-)G -UCGG-A--C UNAUACC-UU 481 AU-GGU---- ---------- -------C-U UG-G--G-UN ---AUU-(-- --------GC 541 AU-------- -)-GAU---G AU-UC----A AG--UAAA-- ---GA----- ---------- 601 --(------- ---UUNA--- ---)------ ---------| -----U--U- G--CUA---- 661 ----UCAG-- AUA---G-|G CAUGC----- -GU|----UC C--AUUA-G- UUA-G---UU 721 GG-UG-AG-( GU-AAC-GG) -C-UCACN-N A|-GGC-GA- CGA------- -----UG-GA 781 U-AG-G-GG| -A-ACU--(G -AGA)-GGUU ----UA-U-- CCC-C|C-AC -ACUGG-U-A 841 (CUGA-GA-C ACG)--GACC -AGA-C-UCN -(NNCG)--G GAG-GC-AG- C-A---GU-G 901 AGG-AAUAUU G-GUCAAU-- GG-GC-(GAG A)-GCC-UGA ACCA|-GCCA CGUC-GC-GU 961 G-A-AG-G-A A-GAC--G-G UU(C-UA-U- -G)GA-UUGU AAA--CUNC| UUUU-AU-AG 1021 --GG-GAU-- NA-AAGU-UA --UNC-A--( -----CGNN- ---------) --NN-NA-NN 1081 ---------- -------U-U U-GC-AAGU- A-CCC-U-AU G-AA--UAAG ---------C 1141 -AUCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUN-A) U-A-C-GGAG |-GAUG-C-- 1201 GAG-CGUUAU CC-GGAUUUA -UU-GGGU|U UAAA-GGGU- GCG-UAG-GU -G|-GC-CG- 1261 G-AU-AAG|U CGG---GGGU G-AAA-AG-C UG-UGG-C(- UC-A)A-CCA -CA-G-NCU- 1321 -UGCC-UUCG A-AAC-UGUU U-GGCUU-GA GUA-----UA G-AU-GAAGU AGG-C|GGAA 1381 UU-UGUGGU- GUA-GCG(-G UGAAA)-UGC -AU-AGAU-A UC-ACGAGG- AACU-CCGA- 1441 -U-U-GC(-G AA-G)GCAG- -CUUACUA-- ---------- ---------- ---------A 1501 GUU--AU-GA CUGACA-CUG AA-G------ -------CA- C-GAAA-GC- GU-GGG-NA- 1561 UC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CA-GU--A 1621 AAC-G-AUGA U--AA-CU-- -------G|G -GC-GU-AUG -CG------- ---------- 1681 -(AUA-UA)C ---------- ---------- ---------- ---------A -GUAUG-CUC 1741 CU--GA---- --GC-(GAA- ---A)G-CG- UUAA-GUUAU C|C|N-CCU- G-GGGAGUAC 1801 GCC-G---(G CAA)---C-G GU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGAGG-AAC A-U-GU-GGU -UUAAUU-CG -(AUGNUA-C G)--CGAGGA 1921 A-CCUUA-CC CGG-GA-UUG AAA-UU|--- -------U-A ---GCGG--- -AC----UAU 1981 -GUA-U--(- GAAA-)-GUA -C-AUNU--- C--------- ---CU----- --(GU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 -------CNC A-)------- AG-------- -----G---| CCG-CU-AAG |---U|A--G 2161 GU-GC-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GC-C(-GUG A)-GGUGU-C 2221 GG-C-(UUAA -GU)-GCCAU AA-------- CGAG-C--GC AACCC-AC-G |-UU--GUC- 2281 AG--UUAC-U AU-CGG---- ---------- ---------- ---G(---UA ---AAG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CCG|A 2701 G-GA-CU-C- U-GAC-AA-G A-CU-G-CCG --UC(-G--N AA)-GGC-GC -GAGG-A-AG 2761 G-UG-UGG-A UG-ACG--UC -A-AAUC-AG CAC-G-GC-C CUUAC-A-UC -CG--GGGC- 2821 G-ACA-CA-C GUG--UUACA AUGGU-G-GG -GA--CAAAG GGC-A-G-C- UA-CUU-G(G 2881 -UGA)CAAG- ---------- AU-GCGAA-U CUCC--AAAC -CC-C-AUC- CCAGUUCGGA 2941 U-CGUAGUC- (UGCAAC-U- C)-GACUAUG -UGAAGC-UG -GAUU-CGC- -UAGUA-AUC 3001 GC-GCA-(UC -AGCCAU)-G GCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-AAG--- --CCA-UGGG A--GU-CGG- GA-GU-ACCU -AAA-G-CAC 3121 G-U------- -AA-CC---- ---------- ---------- -----(---- -GCGA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGG------ G-CG-UG-UU A-GGGU-AAU ACC-GG-UG. .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Ppm.macaca 4376 bp RNA RNA 02-JUL-1998 DEFINITION Porphyromonas macacae. ACCESSION No information KEYWORDS No information. SOURCE Porphyromonas macacae. ORGANISM Porphyromonas macacae. REFERENCE 1 AUTHORS Paster,B.J., Dewhirst,F.E., Olsen,I. and Fraser,G.J. TITLE Phylogeny of Bacteroides, Prevotella, and Porphyromonas spp. and related bacteria JOURNAL J. Bacteriol. 176, 725-732 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: L16494 Former RDP Sids: Bac.macaca ATCC 33141 (T) = DSM 20710 biol_source= macaque periodontal pocket NB: former name Bacteroides macacae BASE COUNT 383 a 312 c 437 g 331 t 2913 others ORIGIN 1 .......... .......... .......... ...ACAGAGA AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAU -NAAC-GC-- UAGC-GAC-A -GGC-UN--A ACAC-AUGCA A-GUC-GAGG 121 G--GC-AG-C AU-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -GGUCUU-AG (--CU----- ---------- ---------- 241 --------UG -)CU-AAGAU U--------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- AUG|-GC--G ACCG-GCGC- 361 -A-CG-GG-U GCGU---AAC -GC-GUAUG- UAA--CUU-G C-CUGA---U -AGAA-A-GG 421 -GAU-AA-CC C--------- ------GG-- U(-GAAA-)G -UCGG-A--C UNAUACC-UU 481 AU-GGU---- ---------- -------C-U UG-G--G-UU ---AUU-(-- --------GC 541 AU-------- -)-GAU---G AU-UC----A AG--UAAA-- ---GA----- ---------- 601 --(------- ---UUAA--- ---)------ ---------| -----U--U- G--CUA---- 661 ----UCAG-- AUA---G-|G CAUGC----- -GU|----UC C--AUUA-G- UUG-G---UU 721 GG-UG-AG-( GU-AAC-GG) -C-UCACC-A A|-GGC-UA- CGA------- -----UG-GA 781 U-AG-G-GG| -U-UCU--(G -AGA)-GGUU ----UA-U-- CCC-C|C-AC -ACUGG-U-A 841 (CUGA-GA-C ACG)--GACC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 AGG-AAUAUU G-GUCAAU-- GG-GC-(GAG A)-GCC-UNA ACCA|-GCCA CGUC-GC-GU 961 G-A-AG-G-A A-GAC--G-G UU(C-UA-U- -G)GA-UUGU AAA--CUNC| UUUU-AU-AG 1021 --GG-GGA-- UN-AAGU-UA --UCC-A--( -----CGUG- ---------) --UG-GA-UN 1081 ---------- -------U-U U-GC-AAGU- A-CCC-U-AU G-AA--UAAG ---------C 1141 -AUCGGCU-N ACUCC-GUG( CCA--GCAGC CGCGGUN-A) U-A-C-GGAG |-GAUG-C-- 1201 NAG-CGUUAU CC-GGAUUUA -UU-GGGU|U UAAA-GGGU- GCG-UAG-GU -G|-GC-CU- 1261 G-AU-AAG|U CGG---GGGU G-AAA-AG-C UG-UGG-C(- UC-A)A-CCA -CA-G-UCU- 1321 -UGCC-UUCG A-AAC-UGUU U-GGCUU-GA GUA-----UA G-AU-GAAGU AGG-C|GGAA 1381 UU-UGUGGU- GUA-GCG(-G UGAAA)-UGC -AU-AGAU-A UC-ACGAGG- AACU-CCGA- 1441 -U-U-GC(-G AA-G)GCAG- -CUUACUA-- ---------- ---------- ---------A 1501 GUU--AU-GA CUGACA-CUG AA-G------ -------CA- C-GAAA-GC- GU-GGG-UA- 1561 UC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CA-GU--A 1621 AAC-G-AUGA U--AA-CU-- -------G|G -GC-GU-AUG -CG------- ---------- 1681 -(AUA-UA)C ---------- ---------- ---------- ---------A -GUAUG-CUC 1741 CU--GA---- --GC-(GAA- ---A)G-CG- UUAA-GUUAU C|C|A-CCU- G-GGGAGUAC 1801 GCC-G---(G CAA)---C-G GU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGAGG-AAC A-U-GU-GGU -UUAAUU-CG -(AUGAUA-C G)--CGAGGA 1921 A-CCUUA-CC CGG-GA-UUG AAA-UU|--- -------U-A ---GCGG--- -AC----UAU 1981 -GUA-U--(- GAAA-)-GUA -C-AUAU--- C--------- ---CU----- --(GU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 -------CAC A-)------- AG-------- -----G---| CCG-CU-AAG |---U|A--G 2161 GU-GC-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GC-C(-GUG A)-GGUGU-C 2221 GG-C-(UUAA -GU)-GCCAU AA-------- CGAG-C--GC AACCC-AC-G |-UU--GUC- 2281 AG--UUAC-U AU-CGG---- ---------- ---------- ---G(---UA ---AAG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CCG|A 2701 G-GA-CU-C- U-GAC-AA-G A-CU-G-CCG --UC(-G--U AA)-GGC-GC -GAGG-A-AG 2761 G-UG-UGG-A UG-ACG--UC -A-AAUC-AG CAC-G-GC-C CUUAC-A-UC -CG--GGGC- 2821 G-ACA-CA-C GUG--UUACA AUGGU-G-GG -GA--CAAAG GGC-A-G-C- UA-CUU-G(G 2881 -UGA)CAAG- ---------- AU-GCGAA-U CUCC--AAAC -CC-C-AUC- CCAGUUCGGA 2941 U-CGUAGUC- (UGCAAC-U- N)-GACUAUG -UGAAGC-UG -GAUU-CGC- -UAGUA-AUC 3001 GC-GCA-(UC -AGCCAU)-G GCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-AAG--- --NCA-UGGG A--GU-CGG- GA-GU-ACCU -AAA-G-CAC 3121 G-U------- -AA-CC---- ---------- ---------- -----(---- -GCGA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGG------ G-CG-UG-UC A-GGGU-AAU ACC-GG-UG- ACU....... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Ppm.asacch 4376 bp RNA RNA 02-JUL-1998 DEFINITION Porphyromonas asaccharolytica. ACCESSION No information KEYWORDS No information. SOURCE Porphyromonas asaccharolytica. ORGANISM Porphyromonas asaccharolytica. REFERENCE 1 AUTHORS Paster,B.J., Dewhirst,F.E., Olsen,I. and Fraser,G.J. TITLE Phylogeny of Bacteroides, Prevotella, and Porphyromonas spp. and related bacteria JOURNAL J. Bacteriol. 176, 725-732 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: L16490 biol_source= empyema BASE COUNT 398 a 320 c 439 g 313 t 2906 others ORIGIN 1 .......... .......... .......... .UAACAAUGG AGAGUU(U-G A)C-UCU|-G 61 GCUCAG-GAU -GAAC-GC-- UAGC-GAU-A -GGC-UU--A ACAC-AUGCA A-GUC-GAGG 121 G--GC-AG-C GA-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---GAYG-UA (--GC----- ---------- ---------- 241 --------AA -)UA-CGUC- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- UCG|-GC--G ACCG-GCGA- 361 -A-UG-GG-U GAGU---AAC -AC-GUAUG- CAA--CUU-A C-CUCU---U -AGUG-G-UG 421 -AAU-AA-CC C--------- ------GA-- U(-GAAA-)G -UCGG-A--C UAAUACA-CC 481 AU-AUA---- ---------- -------C-U CC-U--U-AG ---AUC-(-- --------CC 541 AU-------- -)-GAG---A AG-AG----G AG--GAAA-- ---GA----- ---------- 601 --(------- ---UUAA--- ---)------ ---------| -----U--C- G--CUA---- 661 ----AGAG-- AUG---G-|G CCUGC----- -GU|----UC C--AUUA-G- CUA-G---UU 721 GG-UA-AG-( GU-AAC-GG) -C-UUACC-A A|-GGC-AA- CGA------- -----UG-GA 781 U-AG-G-GG| -G-ACU--(G -AGA)-GGUU ----GA-C-- CCC-C|C-AC -AUUGA-C-A 841 (CUGA-GA-U ACG)--GGUC -NAA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 AGG-AAUAUU G-GUCAAU-- GG-GC-(GAG A)-GCC-UGA ACCA|-GCCA AGUC-GC-GU 961 G-A-AG-G-A A-GAC--U-G CC(C-GC-AA -G)GG-UUGU AAA--CUNC| UUUU-GU-AU 1021 --GG-GAU-- UA-AAGU-CA --CCU-A--( -----CGUG- ---------) --UA-GG-UN 1081 ---------- -------U-U U-GC-AGUU- A-CCA-U-AC G-AA--UAAG ---------C 1141 -AUCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GAUG-C-- 1201 GAG-CGUUAU CC-GGAAUUA -UU-GGGU|U UAAA-GGGU- GCG-UAG-GU -U|-GC-AA- 1261 G-GG-AAG|U CAG---GGGU G-AAA-AG-C UG-UAG-C(- UC-A)A-CUA -UG-G-UCU- 1321 -UGCC-UUUG A-AAC-UCUC U-AGCUA-GA GUG-----UA C-UG-GAGGU ACG-U|GGAA 1381 CG-UGUGGU- GUA-GCG(-G UGAAA)-UGC -AU-AGAU-A UC-ACACAG- AACU-CCGA- 1441 -U-U-GC(-G CA-G)GCAG- -CGUACUA-- ---------- ---------- ---------C 1501 AUU--AC-AA CUGACA-CUG AA-G------ -------CA- C-GAAA-GC- GU-GGG-UA- 1561 UC-CAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CA-GU--A 1621 AAC-G-AUGA A--UA-CU-- -------A|G -AU-CU-AUG -CG------- ---------- 1681 -(AUA-UA)C ---------- ---------- ---------- ---------A -GUAUG-GGU 1741 CU--AA---- --GC-(GAA- ---A)G-CG- AUAA-GUAUU C|C|A-CCU- G-GGGAGUAC 1801 GCC-G---(G CAA)---C-G GU-NAAACUC -AAA-GAGAU UG-GCGGG-G -G-U-CC--G 1861 C-A--CA-AG CGGAGG-AAC A-U-GU-GGU -UUAAUU-CG -(AUGAUA-C G)--CGAGGA 1921 A-CCUUA-CC CGG-GA-UUG AAA-UG|--- -------U-A ---GAUG--- -CA----UGA 1981 -GGC-U--(- GAGA-)-GGU -C-UN-U--- U--------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- -----G---| NNU-CU-AUG |---U|A--G 2161 GU-GC-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GC-C(-GUG A)-GGUGU-C 2221 GG-C-(UUAA -GU)-GCCAU AA-------- CGAG-C--GC AACCC-GC-G |-UC--GAU- 2281 AG--UUAC-U AA-CGA---- ---------- ---------- ---G(---UC ---AAG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----UCG|A 2701 G-GA-CU-C- U-AUC-GA-G A-CA-G-CCG --UC(-G--U AA)-GAC-GU -GAGG-A-AG 2761 G-AG-CGG-A UG-ACG--UC -A-AAUC-AG CAC-G-GC-C CUUAC-A-UC -CG--GGGC- 2821 G-ACA-CA-C GUG--UUACA AUGGU-A-GG -GA--CAGCG AGC-A-G-C- CA-UCU-G(G 2881 -UGA)CAGA- ---------- GA-GCUAA-U CUAU--AAAC -CC-U-AUC- CCAGUUCGGA 2941 U-CGGAGUC- (UGCAAC-U- C)-GACUCUG -UGAAGC-UG -GAUU-CGC- -UAGUA-AUC 3001 GC-GCA-(UC -AGCCAU)-G GCG-CGGUG- AAUAC-GUU- CCC-GGA-CC UUGCA----C 3061 ACACCGCCC- GUC-AAG--- --CCA-UGGG A--GU-CGG- GG-GU-ACCU -GAA-G-AGC 3121 G-U------- -GA-CC---- ---------- ---------- -----(---- -GUCACA--- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGA------ G-CG-CU-UG A-GGGU-AAA ACU-GG-UG- ACU-GGGG-C 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Ppm.cirden 4376 bp RNA RNA 02-JUL-1998 DEFINITION Porphyromonas circumdentaria. ACCESSION No information KEYWORDS No information. SOURCE Porphyromonas circumdentaria. ORGANISM Porphyromonas circumdentaria. REFERENCE 1 AUTHORS Paster,B.J., Dewhirst,F.E., Olsen,I. and Fraser,G.J. TITLE Phylogeny of Bacteroides, Prevotella, and Porphyromonas spp. and related bacteria JOURNAL J. Bacteriol. 176, 725-732 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: L26102 biol_source= feline gingiva BASE COUNT 394 a 299 c 435 g 327 t 2921 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~AAUGG AGAGUU(U-G A)C-CCU|-G 61 GCUCAG-GAU -NAAC-GC-- UAGC-GAU-A -GGC-UN--A ACAC-AUGCA A-GUC-GAGG 121 G--GC-AG-C AU-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -NGUCUU-AG (--CU----- ---------- ---------- 241 --------UG -)CU-AAGAU A--------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- UUG|-GC--G ACCG-GCGC- 361 -A-CG-GG-U GCGU---AAC -GC-GUAUG- UAA--CCU-G C-CUGU---A -AUUA-G-GG 421 -GAU-AG-CU C--------- ------GG-- U(-GAAA-)G -UCGA-A--U UAAUACC-CU 481 AU-AUU---- ---------- -------C-U AU-A--U-AU ---UUC-(-- --------GC 541 AU-------- -)-GGG---A UU-UA----U AG--GAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--U- G--AUU---- 661 ----ACAG-- AUG---G-|G CAUGC----- -GU|----UC C--AUUA-G- CUU-G---UU 721 GG-UA-AG-( GU-AAC-GG) -C-UUACC-A A|-GGC-AN- CGA------- -----UG-GA 781 U-AG-G-GG| -G-ACU--(G -AGA)-GGUU ----GA-C-- CCC-C|C-AC -ACUGG-U-A 841 (CUGA-GA-C ACG)--GACC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 AGG-AAUAUU G-GUCAAU-- GG-GC-(GAA A)-GCC-UGA ACCA|-GCCA AGUC-GC-GU 961 G-A-AG-G-A A-GAC--U-G UC(C-UA-U- -G)GA-UUGU AAA--CUUC| UUUU-GU-AG 1021 --AG-GAA-- UA-AUGG-UA --GCC-N--( -----CGUG- ---------) --UG-GC-UN 1081 ---------- -------A-G GGGA-AUGU- A-CUC-U-AC G-AA--UAAG ---------U 1141 -AUCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUN-A) U-A-C-GGAG |-GAUA-C-- 1201 GAG-CGUUAU CC-GGAUUUA -UU-GGGU|U UAAA-GGGU- GCG-UAG-GU -G|-GC-GA- 1261 A-UU-AAG|U CAG---UGGU G-AAA-AG-C UG-CAG-C(- UN-A)A-CUG -UA-G-UCU- 1321 -UGCC-GUUG A-AAC-UGGU U-UGCUU-GA GAG-----GA G-AC-GAGGU AUG-U|GGAA 1381 UG-UGUGGU- GUA-GCG(-G UGAAA)-UGC -AU-AGAU-A UC-ACACAG- AACG-CCGA- 1441 -U-U-GC(-G AA-G)GCAG- -CGUACCA-- ---------- ---------- ---------G 1501 GCU--CU-AU CUGACA-CUG AA-G------ -------CA- C-GAAA-GC- GU-GGG-UA- 1561 UC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CU-GU--A 1621 AAC-G-AUGA A--UA-CU-- -------A|G -AU-UU-UUG -CG------- ---------- 1681 -(AUA-UA)C ---------- ---------- ---------- ---------A -GUAAG-AGU 1741 CU--AA---- --GC-(GAA- ---A)G-CG- AUAA-GUAUU C|C|A-CCU- G-GGGAGUAC 1801 GCC-G---(G CAA)---C-G GU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGAGG-AAC A-U-GU-GGU -UUAAUU-CG -(AUGAUA-C G)--CGAGGA 1921 A-CCUUA-CC UGG-GA-UUG AAA-UU|--- -------U-A ---GGAG--- AAC----GAU 1981 -UUA-U--(- GAAA-)-GUA -G-ANNU--- U--------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- -----G---| CUC-CU-AAG |---U|A--G 2161 GU-GC-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GC-C(-GUG A)-GGUGU-C 2221 GG-C-(UUAA -GU)-GCCAU AA-------- CGAG-C--GC AACCC-GC-G |-UU--GAU- 2281 AG--UUAC-U AA-CAG---- ---------- ---------- ---A(---UN ---AAG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CUG|A 2701 G-GA-CU-C- U-AUC-GA-G A-CA-G-CCG --UC(-G--U AA)-GAN-GC -GAGG-A-AG 2761 G-GG-CGG-A UG-ACG--UC -A-AAUC-AG CAC-G-GC-C CUUAC-A-UC -CA--GGGC- 2821 G-ACA-CA-C GUG--UUACA AUGGC-A-AG -GA--CAAAG GGA-A-G-C- CA-CAU-A(G 2881 -CGA)UAUG- ---------- GA-GCAGA-U CCUC--AAAC -CU-N-GUC- CCAGUUCGGA 2941 U-CGGAGUC- (UGCAAC-U- C)-GACUCCG -UGAAGC-UG -GAUU-CGC- -UAGUA-AUC 3001 GC-GCA-(UC -AGCCAU)-G GCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-AAG--- --CNN-UGGG A--GU-CGG- GG-GU-ACCU -GAA-G-AGU 3121 G-U------- -AA-CC---- ---------- ---------- -----(---- -GUAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGA------ G-CG-CU-UA A-GGGU-AAU ACC-GG-UG. .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Ppm.endodo 4376 bp RNA RNA 02-JUL-1998 DEFINITION Porphyromonas endodontalis. ACCESSION No information KEYWORDS No information. SOURCE Porphyromonas endodontalis. ORGANISM Porphyromonas endodontalis. REFERENCE 1 AUTHORS Paster,B.J., Dewhirst,F.E., Olsen,I. and Fraser,G.J. TITLE Phylogeny of Bacteroides, Prevotella, and Porphyromonas spp. and related bacteria JOURNAL J. Bacteriol. 176, 725-732 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: L16491 biol_source= infected root canal BASE COUNT 397 a 317 c 437 g 316 t 2909 others ORIGIN 1 .......... .......... .......... .UAACAAUGG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAU -NAAC-GC-- UAGC-GAU-A -GGC-UU--A ACAC-AUGCA A-GUC-GAGG 121 G--GC-AG-C AU-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -CAUCUU-AG (--CU----- ---------- ---------- 241 --------UG -)CU-AAGAU A--------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- AUG|-GC--G ACCG-GCGC- 361 -A-CG-GG-U GCGU---AAC -GC-GUAUG- CAA--CCU-G C-CUGU---A -AUUA-G-GG 421 -AAU-AA-CC C--------- ------GG-- U(-GAAA-)G -UCGG-A--C UAAUACC-CU 481 AU-AUU---- ---------- -------C-U UC-U--U-UC ---UCC-(-- --------GC 541 AU-------- -)-GGA---G GA-GG----A CG--GAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--U- G--AUU---- 661 ----ACAG-- AUG---G-|G CAUGC----- -GU|----CC C--AUUA-G- CUA-G---UU 721 GG-UA-AG-( GU-AAC-GG) -C-UUACC-A A|-GGC-AA- CGA------- -----UG-GG 781 U-AG-G-GG| -G-ACU--(G -AGA)-GGUU ----GA-C-- CCC-C|C-AC -ACUGG-U-A 841 (CUGA-GA-C ACG)--GACC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 AGG-AAUAUU G-GUCAAU-- GG-GC-(GAG A)-GCC-UGA ACCA|-GCCA AGUC-GC-GU 961 G-A-AG-G-A C-GAC--G-G UU(C-UA-U- -G)GA-UUGU AAA--CUUC| UUUU-GU-AG 1021 --AG-GAA-- UA-AUGG-CA --GCU-A--( -----CGUG- ---------) --UA-GC-UN 1081 ---------- -------A-G AUGC-AUGU- A-CUC-U-AC G-AA--UAAG ---------U 1141 -AUCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUN-A) U-A-C-GGAG |-GAUA-C-- 1201 GAG-CGUUAU CC-GGAAUUA -UU-GGGU|U UAAA-GGGU- GCG-UAG-GU -G|-GC-GU- 1261 A-UU-AAG|U CAG---UGGU G-AAA-AG-C UG-CAG-C(- UC-A)A-CUG -UA-G-UCU- 1321 -UGCC-GUUG A-AAC-UNAU A-UGCUA-GA GGA-----GA C-CG-AAGGU AUG-C|GGAA 1381 UG-UGUGGU- GUA-GCG(-G UGAAA)-UGC -AU-AGAU-A UC-ACACAG- AACG-CCGA- 1441 -U-U-GC(-G AA-G)GCAG- -CGUACUA-- ---------- ---------- ---------G 1501 GCU--CC-GU CUGACA-CUG AA-G------ -------CA- C-NAAA-GC- GU-GGG-GA- 1561 UC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CA-GU--A 1621 AAC-G-AUGA A--UA-CU-- -------A|G -AU-UU-UUG -CG------- ---------- 1681 -(AUA-UA)C ---------- ---------- ---------- ---------U -GUAAG-AGU 1741 CU--AA---- --GC-(GAA- ---A)G-CG- AUAA-GUAUU C|C|A-CCU- G-GGGAGUAC 1801 GCC-G---(G CAA)---C-G GU-NAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGAGG-AAC A-U-GU-GGU -UUAAUU-CG -(AUGAUA-C G)--CGAGGA 1921 A-CCUUA-CC CGG-GA-UUG AAA-UU|--- -------U-A ---GAUG--- -AU----GGC 1981 -AGA-U--(- GAGA-)-GUU -U-GCUU--- U--------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- -----A---| CAU-CU-AAG |---U|A--G 2161 GU-GC-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GC-C(-GUG A)-GGUGU-C 2221 GG-C-(UUAA -GU)-GCCAU AA-------- CGAG-C--GC AACCC-GC-G |-UC--GAU- 2281 AG--UUAC-U AA-CAG---- ---------- ---------- ---G(---UU ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CUG|A 2701 G-GA-CU-C- U-AUC-GA-G A-CA-G-CCG --UC(-G--U AA)-GAC-GC -GAGG-A-AG 2761 G-GG-CGG-A UG-ACG--UC -A-AAUC-AG CAC-G-GC-C CUUAC-A-NC -CG--GGGC- 2821 G-ACA-CA-C GUG--UUACA AUGGC-A-GG -GA--CAAAG GGA-A-G-C- GA-CAU-G(G 2881 -UGA)CAUG- ---------- AA-GCGGA-U CUCC--AAAC -CC-N-GUC- CCAGUUCGGA 2941 U-CGGAGUC- (UGCAAC-U- C)-GACUCCG -UGAAGC-UG -GAUU-CGC- -UAGUA-AUC 3001 GC-GCA-(UC -AGCCAU)-G GCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-AAG--- --CCA-UGGA A--GU-UGG- GA-GU-ACCU -GAA-G-AGC 3121 G-U------- -AA-CC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGG------ G-AG-CU-UA A-GGGU-AAU ACC-AG-UG- AC........ 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS str.3_23 4376 bp RNA RNA 02-JUL-1998 DEFINITION str. PUS3.23. str. PUS3.23. ACCESSION No information KEYWORDS No information. SOURCE str. PUS3.23. str. PUS3.23. ORGANISM str. PUS3.23. REFERENCE 1 AUTHORS Dymock,D., Weightman,A.J., Scully,C. and Wade,W.G. TITLE Molecular analysis of microflora associated with dentoalveolar abscesses JOURNAL J. Clin. Microbiol. 34, 537-542 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: U43697|g1172141 isolate_name= PUS3.23 BASE COUNT 388 a 313 c 442 g 308 t 2925 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......GAU -GAAC-GC-- UAGC-GAU-A -GGC-UU--A ACAC-AUGCA A-GUC-GAGG 121 G--GC-AG-C AU-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -UAUUUU-AG (--CU----- ---------- ---------- 241 --------UG -)CU-AAGAU A--------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- AUG|-GC--G ACCG-GCGC- 361 -A-CG-GG-U GCGU---AAC -GC-GUAUG- CAA--CCU-G C-CUGU---A -AUUA-G-GG 421 -AAU-AA-CC C--------- ------GG-- U(-GAAA-)G -UCGG-A--C UAAUACC-CU 481 AU-AUU---- ---------- -------C-U UC-U--U-UC ---UCC-(-- --------GC 541 AU-------- -)-GGG---G GA-GG----A CG--GAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U---- G--AUU---- 661 ----ACAG-- AUG---G-|G CAUGC----- -GU|----CC C--AAUA-G- CUG-G---UU 721 GG-UA-AG-( GU-AAC-GG) -C-UUACC-A A|-GGC-AA- CGA------- -----UG-GG 781 U-AG-G-GG| -G-ACU--(G -AGA)-GGUU ----GA-C-- CCC-C|C-AC -ACUGG-U-A 841 (CUGA-GA-C ACG)--GACC -AGA-C-UC- -(UACG)--G GAG-GC-AG- C-A---GU-G 901 AGG-AAUAUU G-GUCAAU-- GG-GC-(GAG A)-GCC-UGA ACCA|-GCCA AGUC-GC-GU 961 G-A-AG-G-A C-GAC--G-G UU(C-UA-U- -G)GA-UUGU AAA--CUUC| UUUU-GU-AG 1021 --AG-GAA-- UAACGGG-CA --CGU-A--( -----CGCG- ---------) --UA-GC-UG 1081 ---------- -------A-G AUGC-AUGU- A-CUC-U-AC G-AA--UAAG ---------U 1141 -AUCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GAUA-C-- 1201 GAG-CGUUAU CC-GGAAUUA -UU-GGGU|U UAAA-GGGU- GCG-UAG-GU -G|-GC-GU- 1261 A-UU-AAG|U CAG---UGGU G-AAA-AG-C UG-CAG-C(- UC-A)A-CUG -UA-G-UCU- 1321 -UGCC-GUUG A-AAC-UGAU A-UGCUA-GA GAG-----GA G-AC-GAGGU AUG-C|GGAA 1381 UG-UGUGGU- GUA-GCG(-G UGAAA)-UGC -AU-AGAU-A UC-ACACAG- AACG-CCGA- 1441 -U-U-GC(-G AA-G)GCAG- -CGUACCA-- ---------- ---------- ---------G 1501 GCU--CC-GU CUGACA-CUG AA-G------ -------CA- C-GAAA-GC- GU-GGG-GA- 1561 UC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CA-GU--A 1621 AAC-G-AUGA A--UA-CU-- -------A|G -AU-UU-UUG -CG------- ---------- 1681 -(AUA-UA)G ---------- ---------- ---------- ---------U -GUAAG-AGU 1741 CU--AA---- --GC-(GAA- ---A)G-CG- -UAA-GUAUU C|C|A-CCU- G-GGGAGUAC 1801 GCC-G---(G CAA)---C-G GU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CG--C 1861 C-A--CA-AG GCGAGG-AAC A-U-GU-GGU -UUAAUU-CG -(AUGAUA-C G)--CGAGGA 1921 A-CCUUA-CC CGG-GA-UUG AAA-UU|--- -------U-A ---GAUG--- -AC----GGC 1981 -AGA-U--(- GAGA-)-GUU -U-GCUU--- U--------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- -----A---| CAU-CU-AAG |---U|A--G 2161 GU-GC-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GC-C(-GUG A)-GGUGU-C 2221 GG-C-(UUAA -GU)-GCCAU AA-------- CGAG-C--GC AACCC-GC-G |-UC--GAU- 2281 AG--UUAC-U AA-CAG---- ---------- ---------- ---G(---UU ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CUG|A 2701 G-GA-CU-C- U-AUC-GA-G A-CA-G-CCG --UC(-G--U AA)-GAC-CG -AAGG-A-A- 2761 G-GG-CGG-A UG-ACG--UC -A-AAUC-AG CAC-G-GC-C CUUAC-A-UC -CG--GGGC- 2821 G-ACA-CA-C GUG--UUACA AUGGC-A-GG -GA--CAAAG GGA-A-G-C- GA-CAU-G(G 2881 -UGA)CAUG- ---------- AA-GCGGA-U CUCC--AAAC -CC-U-GUC- CCAGUUCGGA 2941 U-CGGAGUC- (UGCAAC-U- C)-GACUCCG -UGAAGC-UG -GAUU-CGC- -UAGUA-AUC 3001 GC-GCA-(UC -AGCCAU)-G GCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-AAG--- --CCA-UGGA A--GU-UGG- GA-GU-ACCU -GAA-GGAGC 3121 G-U------- -AA-CC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGG------ G-CG-CU-UA A-GGGU-AAU ACC-AG-UG- ACU-GGGG-C 3301 U......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Ppm.canors 4376 bp RNA RNA 02-JUL-1998 DEFINITION Porphyromonas canoris. ACCESSION No information KEYWORDS No information. SOURCE Porphyromonas canoris. ORGANISM Porphyromonas canoris. REFERENCE 1 AUTHORS Collins,M.D., Love,D.N., Karjalainen,J., Kanervo,A., Forsblom,B., Willems,A., Stubbs,S., Sarkiala,E., Bailey,G.D., Wigney,D.I. and Jousimies-Somer,H. TITLE Phylogenetic analysis of members of the genus Porphyromonas and description of Porphyromonas cangingivalis sp. nov. and Porphyromonas cansulci sp. nov JOURNAL Int. J. Syst. Bacteriol. 44, 674-679 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X76261|g577602 NB: paper does not list this accession no. BASE COUNT 396 a 319 c 436 g 333 t 2892 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......GAU -GAAC-GC-- UACC-GAU-A -GGC-UU--A ACAC-AUGCA A-GUC-GAGG 121 G--GC-AG-C AC-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -GUAUUC-AG (--CU----- ---------- ---------- 241 --------UG -)CU-GAAUA U--------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- GUG|-GC--G ACCG-NCGG- 361 -A-UG-GG-U NCGU---AAC -GC-GUAUG- CAA--CUU-A C-CUGU---C -AGAG-G-GG 421 -GAU-AA-CC C--------- ------GG-- A(-GAAA-)U -UCGG-A--C UAAUACC-GC 481 AU-AUA---- ---------- -------C-U UG-A--G-AU ---GCU-(-- --------GC 541 AU-------- -)-GGU---G UU-UC----A AG--GAAA-- ---UA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--A- G--CUG---- 661 ----ACAG-- AUA---G-|G CAUGC----- -GU|----UC C--AUUA-G- CUA-G---UA 721 GG-UG-AG-( GU-AAC-GG) -C-UCACC-U A|-GUC-GA- CGA------- -----UG-GA 781 U-AG-G-GG| -A-ACU--(G -AGA)-GGUU ----AA-A-- CCC-C|C-AC -ACUGG-U-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 AGG-AAUAUU G-GUCAAU-- GG-GC-(GAG A)-GCC-UGA ACCA|-GCCA AUUC-GC-GU 961 G-A-AG-G-A U-GAC--U-G CC(C-UA-U- -G)GG-UUGU AAA--CUUC| UUUA-GU-AG 1021 --GG-GAU-- UA-AAGU-UU --GCC-U--( -----UGCG- ---------) --AG-GC-AA 1081 ---------- -------U-U U-GC-AAGU- A-CCC-U-AA G-AA--UAAG ---------U 1141 -AUCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GAUA-C-- 1201 GAG-CGUUAU CC-GGAUUUA -UUUGGGU|U UAAA-GGGU- GCG-UAG-GU -U|-GC-UU- 1261 U--U-AAG|U CAG---UGGU G-AAA-G--C UG-UGG-C(U CC-A)A-CCA -UA-N-UCUU 1321 CCCUU-GUUG A-AAC-UGAG G-AGCUU-GA GUG-----UA G-AU-GCUGU AGG-C|GGAA 1381 CG-CGUAGU- GUA-GCG(-G UGAAA)-UGC -AU-AGAU-A UU-ACGCAG- AACU-CCGA- 1441 -U-U-GC(-G AA-G)GCAG- -CUUACAA-- ---------- ---------- ---------A 1501 GUU--AC-AA CUGACA-CUG AA-G------ -------CA- C-GAGA-GC- GU-GGG-UA- 1561 UC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA U--UA-CU-- -------A|A -GA-GU-AUG -CG-A----- ---------- 1681 -(UAU-AA)U ---------- ---------- ---------- ---------- -GUAUG-UUC 1741 UA--CA---- --GC-(GAA- ---A)G-CG- UUAA-GUAAU C|C|A-CCU- G-GGGAGUAC 1801 GUC-G---(G CAA)---C-G AU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGAGG-AAC A-U-GU-GGU -UUAAUU-CG -(AUGAUA-C G)--CGAGGA 1921 A-CCUUA-CC CGG-GA-UUG AAA-UG|--- -------U-G ---CAUG--- -AC----GUA 1981 -AAU-U--(G GAGAC)-GAU -U-UAUA--- C--------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- -----G---| CAU-GU-AUA |UG-U|A--G 2161 GU-GC-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GC-C(-GUG A)-GGUGU-C 2221 GG-C-(UUAA -GU)-GCCAU AA-------- CGAG-C--GC AACCC-AC-A |-UU--GUC- 2281 AG--UUAC-U AA-CAG---- ---------- ---------- ---G(---UA ---GAG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CUG|A 2701 G-GA-CU-C- U-GGC-GA-G A-CU-G-CCG --GC(-G--U AA)-GCC-GU -GAGG-A-AG 2761 G-UG-UGG-A UG-ACG--UC -A-AAUC-AG CAC-G-GC-C CUUAC-A-UC -CG--GGGC- 2821 G-ACA-CA-C GUG--UUACA AUGGU-G-AG -GA--CAAAG GGC-A-G-C- UA-CCU-G(G 2881 -CGA)CAGG- ---------- GU-GCGAA-U CUCC--AAAC -CU-C-AUC- UCAGUUCGGA 2941 U-CGGAGUC- (UGCAAC-U- C)-GACUCUG -UGAAGC-UG -GAUU-CGC- -UAGUA-AUC 3001 GC-GCA-(UC -AGCCAU)-G GCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-AAG--- --CCA-UGGA A--GU-CGG- GA-GU-ACCU -GAA-G-UAC 3121 G-U------- -CA-CC---- ---------- ---------- -----(---- -GCNA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGA------ U-CG-UA-CU A-GGGU-AAU ACC-GG-UA- ACU-GGGG-C 3301 U---AAGUC- GUAA-CAAGG UAGCC-GUAC C(GGA-A)GG .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Ppm.levii 4376 bp RNA RNA 02-JUL-1998 DEFINITION Porphyromonas levii. ACCESSION No information KEYWORDS No information. SOURCE Porphyromonas levii. ORGANISM Porphyromonas levii. REFERENCE 1 AUTHORS Shah,H.N., Collins,M.D., Olsen,I., Paster,B.J. and Dewhirst,F .E. TITLE Reclassification of Bacteroides levii (Holdeman, Cato, and Moore) in the genus Porphyromonas, as Porphyromonas levii comb. nov. JOURNAL Int. J. Syst. Bacteriol. 45, 586-588 (1995) STANDARD No information REFERENCE 2 AUTHORS Paster,B.J., Dewhirst,F.E., Olsen,I. and Fraser,G.J. TITLE Phylogeny of Bacteroides, Prevotella, and Porphyromonas spp. and related bacteria JOURNAL J. Bacteriol. 176, 725-732 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: L16493 Former RDP Sids: Bac.levii biol_source= bovine rumen NB: former name Bacteroides levii BASE COUNT 397 a 305 c 427 g 332 t 2915 others ORIGIN 1 .......... .......... .......... ...ACAAUGG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAU -NAAC-GC-- UAGC-GAU-A -GGC-UN--A ACAC-AUGCA A-GUC-GAGG 121 G--GU-AA-C AU-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -GGGAGU-AG (--CU----- ---------- ---------- 241 --------UG -)CU-GCUUC U--------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- AUG|-AC--G ACCG-GCGG- 361 -A-UG-GG-U GAGU---AAC -GC-GUAUG- CAA--CUU-G C-CUCU---U -AGUG-G-GG 421 -AAU-AA-CC C--------- ------GG-- A(-GAAA-)U -CCGG-A--C UAAUACC-GC 481 AU-ACA---- ---------- -------C-U UA-G--U-UA ---UCC-(-- --------GC 541 AU-------- -)-GGA---U GA-UU----A AG--GAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--U- G--CUA---- 661 ----AGAG-- AUA---G-|G CAUGC----- -GU|----UC C--AUUA-G- UUA-G---UU 721 GG-UG-AG-( GU-AAC-GG) -C-UCACC-A A|-GGC-AU- CGA------- -----UG-GA 781 U-AG-G-GG| -A-GCU--(G -AGA)-GGCU ----UA-U-- CCC-C|C-AC -AUUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -NAA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 AGG-AAUAUU G-GUCAAU-- GG-AG-(GAA A)-CUC-UGA ACCA|-GCCA AGUC-GC-GU 961 G-A-AG-G-A U-GAC--U-G UC(C-UA-U- -G)GA-UUGU AAA--CUUC| UUUA-GU-AG 1021 --GC-GAG-- UA-AACG-UA --GGU-A--( -----CGAG- ---------) --UA-CC-UA 1081 ---------- -------C-C U-GC-AAGU- A-GCC-U-AA G-AA--UAAG ---------U 1141 -AUCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-NAUA-C-- 1201 GAG-CGUUAU CC-GGAUUUA -UU-GGGU|U UAAA-GGGU- GCG-UAG-GU -G|-GC-AG- 1261 A-UU-AAG|U CAG---UGGU G-AAA-AG-C UG-UGG-C(- UC-A)A-CCA -UA-G-UCU- 1321 -UGCC-GUUG A-AAC-UNGU U-UGCUU-GA GUA-----CA G-UU-GAUGU AGG-C|GGAA 1381 UG-CGUAGU- GUA-GCG(-G UGAAA)-UGC -AU-AGAU-A UU-ACGCAG- AACU-CCGA- 1441 -U-U-GC(-G AA-G)GCAG- -CUUACAA-- ---------- ---------- ---------A 1501 AGU--GU-AA CUGACA-CUG AU-G------ -------CA- C-GAAA-GC- GU-GGG-UA- 1561 UC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CN-GU--A 1621 AAC-U-AUGA U--UA-CU-- -------C|A -GA-GU-AUG -CG------- ---------- 1681 -(AUA-UA)A ---------- ---------- ---------- ---------U -GUAUG-CUC 1741 UC--AA---- --GC-(GAA- ---A)G-CA- UUAA-GUAAU C|C|A-CCU- G-GGGAGUAC 1801 GUC-G---(G CAA)---C-G AU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGAGG-AAC A-U-GU-GGU -UUAAUU-CG -(AUNAUA-C G)--CGAGNN 1921 A-CCUUA-CC UGG-GA-UUG AAA-UG|--- -------U-A ---UAGG--- ACA----GGG 1981 -GAU-G--(- GAAA-)-CAU -U-CNNNU-- UC-------- ---UC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GA-------- ----GA---| CUU-AU-AUG |---U|A--G 2161 GU-GC-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GC-C(-GUG A)-GGUGU-C 2221 GG-C-(UUAA -GU)-GCCAU AA-------- CGAG-C--GC AACCC-UN-A |-UC--GUU- 2281 AG--UUAC-U AG-CAG---- ---------- ---------- ---G(---UA ---GUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CUG|A 2701 G-GA-CU-C- U-AGC-GA-G A-CU-G-CCG --UC(-G--U AA)-GAC-GA -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AG CAC-G-GC-C CUUAU-A-UC -CA--GGGC- 2821 G-ACA-CA-C GUG--UUACA AUGGU-G-AG -GA--CAAAG GGU-A-G-C- UA-CCU-G(G 2881 -UGA)CAGG- ---------- AU-GCCAA-U CUCC--AAAC -CU-N-AUC- UCAGUUCGGA 2941 U-CGAAGUC- (UGCAAC-U- C)-GACUUCG -UGAAGC-UG -GAUU-CGC- -UAGUA-AUC 3001 GC-GCA-(UC -AGCCAU)-G GCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-AAG--- --CCA-UGGG A--GC-UGG- GG-GU-ACCU -GAA-G-UAC 3121 G-U------- -GA-CC---- ---------- ---------- -----(---- -GCNA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGA------ G-CG-UC-CG A-GGGU-AAG ACC-GG-UG- AC........ 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Ppm.cangin 4376 bp RNA RNA 02-JUL-1998 DEFINITION Porphyromonas cangingivalis. ACCESSION No information KEYWORDS No information. SOURCE Porphyromonas cangingivalis. ORGANISM Porphyromonas cangingivalis. REFERENCE 1 AUTHORS Collins,M.D., Love,D.N., Karjalainen,J., Kanervo,A., Forsblom,B., Willems,A., Stubbs,S., Sarkiala,E., Bailey,G.D., Wigney,D.I. and Jousimies-Somer,H. TITLE Phylogenetic analysis of members of the genus Porphyromonas and description of Porphyromonas cangingivalis sp. nov. and Porphyromonas cansulci sp. nov JOURNAL Int. J. Syst. Bacteriol. 44, 674-679 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X76259|g577600 BASE COUNT 391 a 330 c 453 g 309 t 2893 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......GAU -GAAC-GC-- UAGC-GAU-A -GGC-UU--A ACAC-AUGCA A-GUC-GAGG 121 G--GC-AG-C AC-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -GGGAUU-AG (--CU----- ---------- ---------- 241 --------UG -)CU-AAUCU U--------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- GUG|-GC--G ACCG-GCGU- 361 -A-AG-GG-U GCGU---AAC -GC-GUAUG- CAA--CUU-G C-CUGU---C -AGUG-G-GG 421 -AAU-AA-CC C--------- ------GG-- A(-GAAA-)U -CCGG-A--C UAAUACC-GC 481 AU-ACA---- ---------- -------C-U UU-G--G-UU ---UCC-(-- --------GC 541 AU-------- -)-GGG---G AC-UU----U AG--GAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--U- G--CUG---- 661 ----ACAG-- AUA---G-|G CAUGC----- -GU|----UC C--AUUA-G- AUA-G---UU 721 GG-UG-AG-( GU-AAC-GG) -C-UCACC-A A|-GUC-AA- CGA------- -----UG-GA 781 U-AG-G-GG| -A-GCU--(G -AGA)-GGCU ----UA-U-- CCC-C|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 AGG-AAUAUU G-GUCAAU-- GG-GC-(GAG A)-GCC-UGA ACCA|-GCCA AGUC-GC-GU 961 G-A-AG-G-A A-GAC--G-G UC(C-UA-U- -G)GA-UUGU AAA--CUUC| UUUA-GU-AG 1021 --GU-GAG-- UA-CAAG-CA --GUU-A--( -----CGUG- ---------) --UA-GC-UG 1081 ---------- -------U-A A-GC-AAGU- A-ACC-U-AA G-AA--UAAG ---------U 1141 -AUCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GAUA-C-- 1201 GAG-CGUUAU CC-GGAUUUA -UU-GGGU|U UAAA-GGGU- GCG-UAG-GU -G|-GC-UU- 1261 C-AU-AAG|U CAG---UGGU G-AAA-AG-C UG-UGG-C(- UC-A)A-CCA -UA-G-UCU- 1321 -UGCC-GUUG A-AAC-UGUG G-AGCUU-GA GUG-----CG G-AU-GAGGU AGG-C|GGAA 1381 CG-CGUAGU- GUA-GCG(-N UGAAA)-UGC -AU-AGAU-A UU-ACGCAG- AACU-CCGA- 1441 -U-U-GC(-G AA-G)GCAG- -CUUACCA-- ---------- ---------- ---------A 1501 ACC--GC-AA CUGACA-CUG AA-G------ -------CA- C-GAAA-GC- GU-GGG-UA- 1561 UC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CA-GU--A 1621 AAC-G-AUGA U--UA-CU-- -------C|G -GA-GU-AUG -CG------- ---------- 1681 -(AUA-UA)U ---------- ---------- ---------- ---------G -GUAUG-CUC 1741 CC--AA---- --GG-(GAA- ---A)C-CG- AUAA-GUAAU C|C|A-CCU- G-GGGAGUAC 1801 GCC-G---(G CAA)---C-G GU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGAGG-AAC A-U-GU-GGU -UUAAUU-CG -(AUGAUA-C G)--CGAGGA 1921 A-CCUUA-CC CGG-GA-UUG AAA-UG|--- -------U-A ---CAUG--- -AC----GGU 1981 -UGG-G--(C GAGAG)-CCU -G-ACU---- UC-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- -----G---| CAU-GU-AUG |---U|A--G 2161 GU-GC-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GC-C(-GUG A)-GGUGU-C 2221 GG-C-(UUAA -GU)-GCCAU AA-------- CGAG-C--GC AACCC-AC-A |-UC--GUC- 2281 AG--UUAC-U AG-CAG---- ---------- ---------- ---G(---UA ---GAG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CUG|A 2701 G-GA-CU-C- U-GAC-GA-G A-CU-G-CCG --UC(-G--U AA)-GGC-GC -GAGG-A-AG 2761 G-UG-UGG-A UG-ACG--UC -A-AAUC-AG CAC-G-GC-C CUUAC-A-UC -CG--GGGC- 2821 G-ACA-CA-C GUG--UUACA AUGGU-A-GG -GA--CAAAG GGC-A-G-C- UA-CCU-G(G 2881 -CGA)CAGG- ---------- AU-GCGAA-U CUCC--AAAC -CC-U-AUC- UCAGUUCGGA 2941 U-CGGAGUC- (UGCAAC-U- C)-GACUCCG -UGAAGC-UG -GAUU-CGC- -UAGUA-AUC 3001 GC-GCA-(UC -AGCCAU)-G GCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-AAG--- --CCA-UGGA A--GU-CGG- GG-GU-ACCU -GAA-G-UGC 3121 G-U------- -CA-CC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGA------ U-CG-CA-CG A-GGGU-AAG ACC-GG-UA- ACU-GGGG-C 3301 U---AAGUC- GUAA-CAAGG UAGCC-GUAC C(GGA-A)GG .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Ppm.catoni 4376 bp RNA RNA 02-JUL-1998 DEFINITION Porphyromonas catoniae. ACCESSION No information KEYWORDS No information. SOURCE Porphyromonas catoniae. ORGANISM Porphyromonas catoniae. REFERENCE 1 AUTHORS Willems,A. and Collins,M.D. TITLE Reclassification of Oribaculum catoniae (Moore and Moore 1994) as Porphyromonas catoniae comb. nov. and emendation of the genus Porphyromonas JOURNAL Int. J. Syst. Bacteriol. 45, 578-581 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X82823|g929751 BASE COUNT 375 a 331 c 445 g 306 t 2919 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .........U -GANC-GC-- UANC-GAU-A -GNC-UU--A ACAC-AUNCA A-GUC-GAGG 121 G--GC-AN-C AU-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -GGUCUU-AG (--CU----- ---------- ---------- 241 --------UG -)CU-AAGAC U--------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- AUG|-NC--G ACCG-GCGN- 361 -A-CG-GG-U GCGU---NAC -GC-GUAUG- CAA--CUU-G C-CUCA---C -AGAG-G-GG 421 -GAU-AA-CC C--------- ------GU-- C(-GAAA-)G -ACGG-A--C UAAUACC-GC 481 GU-ACA---- ---------- -------C-U CC-A--G-NC ---UGG-(-- --------GC 541 AU-------- -)-CCA---G GC-UA----G AG--GAAA-- ---UG----- ---------- 601 --(------- ---AAAU--- ---)------ ---------| -----U--C- G--CUG---- 661 ----UGAG-- AUA---G-|G CAUGC----- -GU|----CC C--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAC-GG) -C-UCACC-A A|-GNC-GA- CGA------- -----UG-GG 781 U-AG-G-GG| -A-ACU--(G -AGA)-GGUU ----GA-A-- CCC-C|C-AC -ACUGG-U-A 841 (CUGA-GA-C ACG)--GACC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 AGG-AAUAUU G-GUCAAU-- GG-GC-(GAG A)-GCC-UGA ACCA|-GCCA AGUC-GC-GU 961 G-A-AG-G-A U-GAC--U-G UC(U-UA-U- -G)GA-UUGU AAA--CUUC| UUUU-GU-AG 1021 --GG-GAA-- UA-AAGA-AU --AGU-A--( -----CGUG- ---------) --UA-CC-AU 1081 ---------- -------A-G U-GA-AUGU- A-CCC-U-AC G-AA--UAAG ---------C 1141 -AUCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GAUG-C-- 1201 GAG-CGUUAU CC-GGAUUUA -UU-GGGU|U UAAA-GGGU- GCG-UAG-GC -G|-GC-CU- 1261 G-UU-AAG|U CAG---CGGU G-AAA-UC-U AG-GGG-C(- UU-A)A-CUC -CU-A-AAU- 1321 -UGCC-AUUG A-UAC-UGGU G-GGCUU-GA GUG-----UA G-AU-GAGGU AGG-C|GGAA 1381 UG-CGUGGU- GUA-GCG(-G UGGAA)-UGC -AU-AGAU-A UC-ACGCAG- AACU-CCAA- 1441 -U-U-GC(-G AA-G)GCAG- -CUUACUA-- ---------- ---------- ---------A 1501 GGU--AC-AA CUGACG-CUG AA-G------ -------CA- C-GAAA-GC- GU-GGG-UA- 1561 UC-ANA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CA-GU--A 1621 AAC-G-AUGA U--AA-CU-- -------G|G -GC-GU-AUG -CG-A----- ---------- 1681 -(UAU-AC)A ---------- ---------- ---------- ---------- -GUAUG-CUC 1741 CU--AA---- --GC-(GAA- ---A)G-CG- UUAA-GUUAU C|C|A-CCU- G-GGGAGUAC 1801 GCC-G---(G CAA)---C-G GU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGAGG-AAC A-U-GU-GGU -UUAAUU-CG -(AUGAUA-C G)--CGAGGA 1921 A-CCUUA-CC CGG-GA-UUG AAA-UG|--- -------U-A ---GAUG--- -AC----CAC 1981 -CGG-U--(- GAAA-)-GUC -G-NNUU--- C--------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- -----G---| CUU-CU-AUG |---U|A--G 2161 GU-GC-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GC-C(-GUG A)-GGUGU-C 2221 GG-C-(UUAA -GU)-GCCAU AA-------- CGAG-C--GC AACCC-CU-G |-UC--UAC- 2281 GG--UUGC-C AU-CAG---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CUG|G 2701 G-AA-CU-C- C-GUA-GA-G A-CU-G-CCG --UC(-G--U AA)-GGC-GU -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AG CAC-G-GC-C CUUAC-A-UC -CG--GGGC- 2821 G-ACA-CA-C GUG--UUACA AUGGU-G-GG -GA--CAAAG GGC-A-G-C- UA-CCU-G(G 2881 -CGA)CAGG- ---------- AU-GCGAA-U CUCC--AAAC -CC-C-AUC- ACAGUUCGGA 2941 U-CGGAGUC- (UGCAAC-U- C)-GACUCCG -UGAAGC-UG -GAUU-CGC- -UAGUA-AUC 3001 GC-GCA-(UC -AGCCAU)-G GCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-AAG--- --CCA-UGGG A--GU-CUG- GA-GU-ACCU -AAA-G-UCC 3121 G-U------- -AC-CU---- ---------- ---------- -----(---- -GCGA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGG------ U-CG-GC-CU A-GGGU-AAU ACA-GG-UG- ACU-GGGG-C 3301 U---AAGUC- GUAA-CAAGG UAGCC-G... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Bac.fsyth2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Bacteroides forsythus. ACCESSION No information KEYWORDS No information. SOURCE Bacteroides forsythus. ORGANISM Bacteroides forsythus. REFERENCE 1 AUTHORS Gersdorf,H., Preisler,S., Choi,B.K. and Goebel,U. JOURNAL Unpublished (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X73962|g508109 legacy_attribute= pure culture cells BASE COUNT 373 a 316 c 449 g 312 t 2926 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .AGC-GAU-A -GGC-UU--A ACAC-AUGCA A-GUC-GAGG 121 G--GC-AG-C GA-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ----UGG-UA (--GC----- ---------- ---------- 241 --------AA -)UA-CCU-- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- UCG|-GC--G ACCG-GCGC- 361 -A-CG-GG-U GAGU---AAC -GC-GUAUG- UAA--CCU-G C-CCGC---A -ACAG-A-GG 421 -GAU-AA-CC C--------- ------GG-- C(-GAAA-)G -UCGG-A--C UAAUACC-UC 481 AU-AAA---- ---------- -------A-C AG-G--G-GU ---UCC-(-- --------GC 541 AU-------- -)-GGGG--C UA-UU----U GU--UAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--U- G--GUU---- 661 ----GCGG-- AUG---G-|G CAUGC----- -GU|----AC C--AUUA-G- GUA-G---UU 721 GG-UG-AG-( GU-AAC-GG) -C-UCACC-A A|-GCC-AU- CGA------- -----UG-GU 781 U-AG-G-GG| -U-UCU--(G -AGA)-GGAA ----GG-U-- CCC-C|C-AC -ACUGG-U-A 841 (CUGG-AA-C ACG)--GACC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 AGG-AAUAUU G-GUCAAU-- GG-GC-(GAG A)-GCC-UGA ACCA|-GCCA AGUC-GC-GU 961 G-A-AG-G-A U-GAC--U-G CC(C-UA-U- -G)GG-UUGU AAA--CUUC| UUUU-AC-AG 1021 --GG-GAA-- UA-AAAU-GA --GAU-A--( -----CGUG- ---------) --UA-UU-UU 1081 ---------- -------A-U U-GC-AUGU- A-CCU-U-GU G-AA--UAAG ---------C 1141 -AUCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GAUG-C-- 1201 GAG-CGUUAU CC-GGAUUUA -UU-GGGU|U UAAA-GGGU- GCG-UAG-GU -G|-GG-CU- 1261 G-UU-AAG|U CCG---CGGU G-AAA-GU-U UG-UCG-C(- UU-A)A-CGA -UA-A-AAU- 1321 -UGCC-GUUG A-AAC-UGGU A-GUCUU-GA GUA-----UA G-AU-GAAGU AGG-C|GGAA 1381 UG-CGUGGU- GUA-GCG(-G UGAAA)-UGC -AU-AGAG-A UC-ACGCAG- AACU-CCGA- 1441 -U-U-GC(-G AA-G)GCAG- -CUUACUA-- ---------- ---------- ---------A 1501 GGU--AU-AA CUGACA-CUG AA-G------ -------CA- C-GAAA-GC- GU-GGG-UA- 1561 UC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CA-GU--A 1621 AAC-G-AUGA U--UA-CU-- -------A|G -GA-GU-UUG -CG------- ---------- 1681 -(AUA-UA)G ---------- ---------- ---------- ---------U -GUAAG-CUC 1741 UA--CA---- --GC-(GAA- ---A)G-CG- UUAA-GUAAU C|C|A-CCU- G-GGGAGUAC 1801 GCC-G---(G CAA)---C-G GU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGAGG-AAC A-U-GU-GGU -UUAAUU-CG -(AUGAUA-C G)--CGAGGA 1921 A-CCUUA-CC CGG-GA-UUG AAA-UG|--- -------U-A ---GACG--- -AC----GGA 1981 -GAG-U--(- GAGA-)-GCU -U-UCUU--- C--------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- -----G---| CGU-CU-AUG |---U|A--G 2161 GU-GC-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GC-C(-GUG A)-GGUGU-C 2221 GG-C-(UUAA -GU)-GCCAU AA-------- CGAG-C--GC AACCC-UG-A |-CU--GUC- 2281 AG--UUGC-U AA-CAG---- ---------- ---------- ---G(---UA ---AAG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CUG|A 2701 G-GA-CU-C- U-GGC-GG-G A-CU-G-CCG --GC(-G--U AA)-GCU-GU -GAGG-A-AG 2761 G-UU-GGG-A UG-ACG--UC -A-AAUC-AG CAC-G-GC-C CUUAC-A-UC -CG--GGGC- 2821 G-ACA-CA-C GUG--UUACA AUGGC-A-GG -GA--CAAAG GGC-A-G-C- UA-CCG-G(G 2881 -CGA)CCGG- ---------- AU-GCCAA-U CUCC--AAAC -CC-U-GUC- UCAGUUCGGA 2941 U-CGGAGUC- (UGCAAC-U- C)-GACUCCG -UGAAGC-UG -GAUU-CGC- -UAGUA-AUC 3001 GC-GCA-(UC -AGCCAU)-G GCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-AAG--- --CCA-UGGG A--GC-CGG- GG-GU-ACCU -GAA-G-UCC 3121 G-U------- -AA-CC---- ---------- ---------- -----(---- -GCGA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -G-A------ U-CG-GC-CU A-GGGU-AAA ACU-GG-UG- ACU-GGGG-C 3301 U---AAGUC- GUAA-CAAGG .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Bac.fsyths 4376 bp RNA RNA 02-JUL-1998 DEFINITION Bacteroides forsythus. ACCESSION No information KEYWORDS No information. SOURCE Bacteroides forsythus. ORGANISM Bacteroides forsythus. REFERENCE 1 AUTHORS Paster,B.J., Dewhirst,F.E., Olsen,I. and Fraser,G.J. TITLE Phylogeny of Bacteroides, Prevotella, and Porphyromonas spp. and related bacteria JOURNAL J. Bacteriol. 176, 725-732 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: L16495 biol_source= human periodontal pocket BASE COUNT 372 a 315 c 452 g 316 t 2921 others ORIGIN 1 .......... .......... .......... .NAACAACGG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAU -GAAC-GC-- UAGC-GAU-A -GGC-UU--A NCAC-AUGCA A-GUC-GAGG 121 G--GC-AG-C GA-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ----UGG-UA (--GC----- ---------- ---------- 241 --------AA -)UA-CCU-- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- UCG|-GC--G ACCG-GCGC- 361 -A-CG-GG-U GAGU---AAC -GC-GUAUG- UAA--CCU-G C-CCGC---A -ACAG-A-GG 421 -GAU-AA-CC C--------- ------GG-- C(-GAAA-)G -UCGG-A--C UAAUACC-UC 481 AU-AAA---- ---------- -------A-C AG-G--G-GU ---UCC-(-- --------GC 541 AU-------- -)-GGGG--C NN-UU----U GU--UAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--U- G--GUU---- 661 ----GCGG-- AUG---G-|G UAUGC----- -GU|----AC C--AUUA-G- GUA-G---UU 721 GG-UG-AG-( GU-AAC-GG) -C-UCACU-A A|-GCC-AU- CGA------- -----UG-GU 781 U-AG-G-GG| -U-UCU--(G -AGA)-GGAA ----GG-U-- CCC-C|C-AC -ACUGG-U-A 841 (CUGA-GA-C ACG)--GACC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 AGG-AAUAUU G-GUCAAU-- GG-GC-(GAG A)-GCC-UGA ACCA|-GCCA AGUC-GC-GU 961 G-A-AG-G-A U-GAC--U-G CC(C-UA-U- -G)GG-UUGU AAA--CUUC| UUUU-AC-AG 1021 --GG-GAA-- UA-AAAU-GA --GAU-A--( -----CGUG- ---------) --UA-UU-UU 1081 ---------- -------A-U U-GC-AUGU- A-CCU-U-GU G-AA--UAAG ---------C 1141 -AUCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUN-A) U-A-C-GGAG |-GAUG-C-- 1201 GAG-CGUUAU CC-GGAUUUA -UU-GGGU|U UAAA-GGGU- GCG-UAG-GU -G|-GG-CU- 1261 G-UU-AAG|U CCG---CGGU G-AAA-GU-U UG-UCG-C(- UU-A)A-CGA -UA-A-AAU- 1321 -UGCC-GUUG A-AAC-UGGU A-GUCUU-GA GUA-----UA G-RU-GAAGU AGG-C|GGAA 1381 UG-CGUGGU- GUA-GCG(-G UGAAA)-UGC -AU-AGAG-A UC-ACGCAG- AACU-CCGA- 1441 -U-U-GC(-G AA-G)GCAG- -CUUACUA-- ---------- ---------- ---------A 1501 GGU--AU-AA CUGACA-CUG AA-G------ -------CA- C-GAAA-GC- GU-GGG-UA- 1561 UC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CA-GU--A 1621 AAC-G-AUGA U--UA-CU-- -------A|G -GA-GU-UUG -CG------- ---------- 1681 -(AUA-UA)G ---------- ---------- ---------- ---------U -GUAAG-CUC 1741 UA--CA---- --GC-(GAA- ---A)G-CG- UUAA-GUAAU C|C|A-CCU- G-GGGAGUAC 1801 GCC-G---(G CAA)---C-G GU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGAGG-AAC A-U-GU-GGU -UUAAUU-CG -(AUGAUA-C G)--CGAGGA 1921 A-CCUUA-CC CGG-GA-UUG AAA-UG|--- -------U-A ---GACG--- -AC----GGA 1981 -GAG-U--(- GAGA-)-GCU -U-UCUU--- C--------- ---C------ --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- -----G---| NGU-CU-AUG |---U|A--G 2161 GU-GC-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GC-N(-GUG A)-GGUGU-C 2221 GG-C-(UUAA -GU)-GCCAU AA-------- CGAG-C--GC AACCC-UG-A |-CU--GUC- 2281 AG--UUGC-U AA-CAG---- ---------- ---------- ---G(---UA ---AAG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CUG|A 2701 G-GA-CU-C- U-NGC-GG-G A-CU-G-CCG --GC(-G--U AA)-GCU-GU -GAGG-A-AG 2761 G-UU-GGG-A UG-ACG--UC -A-AAUC-AG CAC-G-GC-C CUUAC-N-NC -CG--GGGC- 2821 G-ACA-CA-C GUG--UUACA AUGGC-A-GG -GA--CAAAG GGC-A-G-C- UA-CCG-G(G 2881 -CGA)CCGG- ---------- AU-GCCAA-U CUCC--AAAC -CC-U-GUC- UCAGUUCGGA 2941 U-CGGAGUC- (UGCAAC-U- C)-GACUCCG -UGAAGC-UG -GAUU-CGC- -UAGUA-AUC 3001 GC-GCA-(UC -AGCCAU)-G GCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-AAG--- --CCA-UGGG A--GC-CGG- GG-GU-ACCU -GAA-G-UCC 3121 G-U------- -AA-CC---- ---------- ---------- -----(---- -GCGA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGA------ U-CG-GC-CU A-GGGU-AAA ACU-GG-UG. .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS env.spUN71 4376 bp RNA RNA 02-JUL-1998 DEFINITION clone UN71.. ACCESSION No information KEYWORDS No information. SOURCE clone UN71. ORGANISM clone UN71. REFERENCE 1 AUTHORS Ohkuma,M. and Kudo,T. TITLE Phylogenetic diversity of the intestinal bacterial community in the termite Reticulitermes speratus JOURNAL Appl. Environ. Microbiol. 62, 461-468 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: D63629 BASE COUNT 90 a 63 c 96 g 78 t 4049 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) U-A-C-GGAG |-GAUG-C-- 1201 GAG-CGUUAU CC-GGAUUUA -UU-GGGU|U UAAA-GGGU- GCG-UAG-GU -G|-GU-UU- 1261 C-UU-AAG|U CAG---CGGU G-AAA-UC-U CG-GAG-C(- UU-A)A-CUC -CG-A-AAC- 1321 -UGCC-GUUG A-AAC-UGGG C-GACUU-GA GAG-----UG A-AC-GAGGU AGG-C|GGAA 1381 UU-UAUAGU- GUA-GCG(-G UGAAA)-UGC -UU-AGAU-A UU-AUAAAG- AACU-CCGA- 1441 -U-A-GC(-G CA-G)GCAG- -CUUACCA-- ---------- ---------- ---------G 1501 GCC--AC-AU CUGACA-CUG AG-G------ -------CA- C-GAAA-GC- GU-GGG-UA- 1561 UC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CA-GU--A 1621 AAC-G-AUGA U--UA-CU-- -------C|G -CU-GU-UUG -CG------- ---------- 1681 -(AUA-CA)C ---------- ---------- ---------- ---------A -GCAAG-CGG 1741 CU--UA---- --GC-(G... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS env.spUN78 4376 bp RNA RNA 02-JUL-1998 DEFINITION clone UN78.. ACCESSION No information KEYWORDS No information. SOURCE clone UN78. ORGANISM clone UN78. REFERENCE 1 AUTHORS Ohkuma,M. and Kudo,T. TITLE Phylogenetic diversity of the intestinal bacterial community in the termite Reticulitermes speratus JOURNAL Appl. Environ. Microbiol. 62, 461-468 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: D63632 BASE COUNT 94 a 62 c 98 g 73 t 4049 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) U-A-C-GGAG |-GAUG-C-- 1201 GAG-CGUUAU CC-GGAUUUA -UU-GGGU|U UAAA-GGGU- GCG-UAG-GU -G|-GU-UU- 1261 G-AU-AAG|U CAG---CGGU G-AAA-UC-C UG-GAG-C(- UU-A)A-CUC -CG-G-AAC- 1321 -UGCC-GUUG A-AAC-UGUC G-GACUU-GA GAG-----UG A-AC-GAGGC AGG-C|GGAA 1381 UU-CGUAGU- GUA-GCG(-G UGAAA)-UGC -AU-AGAU-A UU-ACGAAG- AACC-CCGA- 1441 -U-A-GC(-G CA-G)GCAG- -CUUGCCA-- ---------- ---------- ---------G 1501 GCC--AC-GA CUGACA-CUG AA-G------ -------CA- C-GAAA-GU- GU-GGG-UA- 1561 UC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- A-CA-GU--A 1621 AAC-G-AUGA A--UA-CU-- -------A|A -CU-GU-UUG -CG-A----- ---------- 1681 -(UAU-AC)A ---------- ---------- ---------- ---------- -GUAAG-CGG 1741 UA--CA---- --GC-(G... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Bac.distas 4376 bp RNA RNA 02-JUL-1998 DEFINITION Bacteroides distasonis. ACCESSION No information KEYWORDS No information. SOURCE Bacteroides distasonis. ORGANISM Bacteroides distasonis. REFERENCE 1 AUTHORS Gherna,R. and Woese,C.R. TITLE A partial phylogenetic analysis of the "Flavobacter-Bacteroides" phylum: basis for taxonomic restructuring JOURNAL Syst. Appl. Microbiol. 15, 513-521 (1992) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: M86695 ATCC 8503 = DSM 20701 (T) BASE COUNT 389 a 354 c 464 g 304 t 2865 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~CAAUU UAAACAACGA AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAU -NAAC-GC-- UAGC-GAC-A -GGC-UU--A ACAC-AUGCA A-GUC-GAGG 121 G--GC-A--C GC-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -GCG-RG-UA (--GC----- ---------- ---------- 241 --------AA -)UA-CCGNG N--------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- CUG|-GC--N ACCG-GCGC- 361 -A-CG-GG-U GAGU---AAC -GC-GUAUG- CAA--CUU-G C-CUAU---C -AGAG-G-GG 421 -GAU-AA-CC C--------- ------GG-- C(-GAAA-)G -UCGG-A--C UAAUACC-GC 481 AU-GAA---- ---------- -------G-C AG-G--G-AU ---CCC-(-- --------GC 541 AU-------- -)-GGGA--A UA-UU----U GC--UAAA-- ---GA----- ---------- 601 --(------- ---UUCA--- ---)------ ---------| -----U--C- G--CUN---- 661 ----AUAG-- AUA---G-|G CAUGC----- -GU|----UC C--AUUA-G- GCA-G---UU 721 GG-CG-GG-( GU-AAC-GG) -C-CCACC-A A|-ACC-GA- CGA------- -----UG-GA 781 U-AG-G-GG| -U-UCU--(G -AGA)-GGAA ----GG-U-- CCC-C|C-AC -AUUGG-U-A 841 (CUGA-GA-C ACG)--GACC -AAA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 AGG-AAUAUU G-GUCAAU-- GG-CC-(GAG A)-GGC-UGA ACCA|-GCCA AGUC-GC-GU 961 G-A-GG-G-A U-GAA--G-G UU(C-UA-U- -G)GA-UCGU AAA--CCUC| UUUU-AU-AA 1021 --GG-GAA-- UA-AAGU-GC --GGG-A--( -----CGUG- ---------) --UC-CN-GU 1081 ---------- -------U-U U-GU-AUGU- A-CCU-U-AU G-AA--UAAG ---------G 1141 -AUCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GAUC-C-- 1201 GAG-CGUUAU CC-GGAUUUA -UU-GGGU|U UAAA-GGGU- GCG-UAG-GC -G|-GC-CU- 1261 U-UU-AAG|U CAG---CGGU G-AAA-GU-C UG-UGG-C(- UC-A)A-CCA -UA-G-AAU- 1321 -UGCC-GUUG A-AAC-UGGG G-NGCUU-GA GUA-----UG U-UU-GAGGC AGG-C|GGAA 1381 UG-CGUGGU- GUA-GCG(-G UGAAA)-UGC -AU-AGAU-A UC-ACGCAG- AACC-CCGA- 1441 -U-U-GC(-G AA-G)GCAG- -CCUGCCA-- ---------- ---------- ---------A 1501 GCC--AU-UA CUGACG-CUG AU-G------ -------CA- C-GAAA-GC- GU-GGG-GA- 1561 UC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CA-GU--A 1621 AAC-G-AUGA U--CA-CU-- -------A|G -CU-GU-UUG -CG------- ---------- 1681 -(AUA-CA)C ---------- ---------- ---------- ---------U -GUAAG-CGG 1741 CA--CA---- --GC-(GAA- ---A)G-CG- UUAA-GUGAU C|C|A-CCU- G-GGGAGUAC 1801 GCC-G---(G CAA)---C-G GU-GAAACUC -AAA-GGAAU UG-ACGGG-N -G-C-CN--G 1861 C-A--CA-AG CGGAGG-AAC A-U-GU-GGU -UUAAUU-CG -(AUGAUA-C G)--CGAGGA 1921 A-CCUUA-CC CGG-GU-UUG AAC-GC|--- -------A-U ---UCGG--- -AC----CGA 1981 -GGU-G--(- GAAA-)-CAC -C-UUUU--- C--------- ---UA----- --(GC----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------A A-)------- UA-------- -----G---| CCG-UU-UGC |---G|A--G 2161 GU-GC-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GC-C(-GUG A)-GGUGU-C 2221 GG-C-(UUAA -GU)-GCCAU AA-------- CGAG-C--GC AACCC-UU-G |-CC--ACU- 2281 AG--UUAC-U AA-CAG---- ---------- ---------- ---G(---UU ---AGG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CUG|A 2701 G-GA-CU-C- U-GGU-GG-N A-CU-G-CCA --GC(-G--U AA)-GCU-GC -GAGG-A-AG 2761 G-CG-GGG-A UG-ACG--UC -A-AAUC-AG CAC-G-GC-C CUUAC-A-UC -CG--GGGC- 2821 G-ACA-CA-C GUG--UUACA AUGGC-G-UG -GA--CAAAG GGA-G-G-C- CA-CCU-G(G 2881 -CGA)CAGG- ---------- GA-GCGAA-U CCCC--AAAC -CA-C-GUC- UCAGUUCGGA 2941 U-CGGAGUC- (UGCAAC-C- C)-GACUCCG -UGAAGC-UG -GAUU-CGC- -UAGUA-AUC 3001 GC-GCA-(UC -AGCCAU)-G GCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-AAG--- --CCA-UGGG A--GC-CGG- GG-GU-ACCU -GAA-G-UCC 3121 G-U------- -AA-CC---- ---------- ---------- -----(---- -GAAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGA------ U-CG-GC-CU A-GGGU-AAA ACU-GG-UG- ACU-GGGG-C 3301 U---AAGNN- GUAA-CAAG. ......GUAC C(GGA-A)G. .......... GAACACCUCC 3361 UUUC|U~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS env.PAD27 4376 bp RNA RNA 02-JUL-1998 DEFINITION unidentified soil. ACCESSION No information KEYWORDS No information. SOURCE unidentified soil. ORGANISM unidentified soil. REFERENCE 1 AUTHORS Ueda,T. TITLE Genetic diversity in soil bacteria JOURNAL Unpublished (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: D26214|g498415 library_source= unidentified soil bacterium from paddy field BASE COUNT 67 a 66 c 81 g 64 t 4098 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... ......CU-A |-UC--AUU- 2281 AG--UUAC-U AA-CAG---- ---------- ---------- ---G(---UU ---AAG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CUG|A 2701 G-GA-CU-C- U-AAU-GA-G A-CU-G-CCA --CC(-G--U AA)-GG--GU -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AG CAC-G-GC-C CUUAC-G-UC -CG--GGGC- 2821 G-ACA-CA-C GUG--UUACA AUGGG-G-GG -UA--CAGAG GGU-U-G-C- UA-CCU-G(G 2881 -UGA)CAGG- ---------- AU-GCUAA-U CUCAU-AAAG -CC-U-CUC- UCAGUUCGGA 2941 U-CGAAGUC- (UGCAAC-U- C)-GACUUCG -UGAAGC-UG -GAUU-CGC- -UAGUA-AUC 3001 GC-GCA-(UC -AGCCAU)-G GCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UU........ 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS str.DF-3 4376 bp RNA RNA 02-JUL-1998 DEFINITION str. CDC str. CDC Group DF-3. ACCESSION No information KEYWORDS No information. SOURCE str. CDC str. CDC Group DF-3. ORGANISM str. CDC. REFERENCE 1 AUTHORS Vandamme,P., Vancanneyt,M., van Belkum,A., Segers,P., Quint,W .G.V., Kersters,K., Paster,B.J. and Dewhirst,F.E. TITLE Polyphasic analysis of strains from the genus Capnocytophaga and Centers for Disease Control Group DF-3 JOURNAL Int. J. Syst. Bacteriol. 46, 782-791 (1996) STANDARD No information COMMENTS Organism information Culture collection: CDC Group DF-3 Sequence information (bases 1 to 4376) Corresponding GenBank entry: U41355 LMG 11519 = CDC F9047 = CCUG 17996 isolate_name= CDC Group DF-3 BASE COUNT 402 a 314 c 426 g 325 t 2909 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 GCUCAG-GAU -GAAC-GC-- UAGC-GAC-A -GGC-CU--A ACAC-AUGCA A-GUC-GAGG 121 G--GU-AG-C AU---G---- ---------- ---------- ---------- ---------- 181 ---------- ---------- --AAAUG-UA (--GC----- ---------- ---------- 241 --------AA -)UA-C-UUU ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- -------AG- AUG|-AC--G ACCG-GCGC- 361 -A-CG-GG-U GAGU---AAY -GC-GUAUG- CAA--CCU-A C-CUAC---U -ACAG-G-GG 421 -AAU-AG-CC C--------- ------GA-- A(-AAAA-)U -UCGG-A--U UAAUGCC-GC 481 AU-AAU---- ---------- -------A-C AG-G--G-GC ---ACC-(-- --------GC 541 AU-------- -)-GGUG--A UA-UU----U GU--UAAA-- ---GA----- ---------- 601 --(------- ---UUAA--- ---)------ ---------| -----U--U- G--GUA---- 661 ----GUAG-- AUG---G-|G CAUGC----- -GU|----UC C--AUUA-G- CCA-G---UU 721 GG-UG-AG-( GU-AAC-GG) -C-UCACC-A A|-AGC-AA- CGA------- -----UG-GA 781 U-AG-G-GG| -U-UCU--(G -AGA)-GGUU ----UA-U-- CCC-C|C-AC -ACUGG-U-A 841 (CUGA-GA-C ACG)--GACC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 AGG-AAUAUU G-GUCAAU-- GG-GC-(GAG A)-GCC-UGA ACCA|-GCCA AGUC-GC-GU 961 G-A-AG-G-A U-GAC--U-G CC(C-UA-U- -G)GG-UUGU AAA--CUUC| UUUU-GU-AC 1021 --UG-GGG-- UA-AAAA-AG --AGG-A--( -----CGUG- ---------) --UC-CU-UU 1081 ---------- -------C-U U-GC-AAGU- A-CAG-U-AC G-AA--UAAG ---------C 1141 -AUCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GAUG-C-- 1201 GAG-CGUUAU CC-GGAUUUA -UU-GGGU|U UAAA-GGGU- GCG-UAG-GC -G|-GG-GA- 1261 U-UU-AAG|U CAG---CGGU G-AAA-GU-U UG-AGG-C(- UC-A)A-CCU -UA-A-AAU- 1321 -UGCC-GUUG A-AAC-UGGG U-UUCUU-GA GUG-----UA U-UU-GAAGU AGG-C|GGAA 1381 UU-CGUUGU- GUA-GCG(-G UGAAA)-UGC -AU-AGAU-A UA-ACGAAG- AACU-CCAA- 1441 -U-U-GC(-G CA-G)GCAG- -CUUACUA-- ---------- ---------- ---------A 1501 ACU--AC-AA CUGACG-CUG AA-G------ -------CN- C-GAAA-UC- GU-GGG-UA- 1561 UC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CA-GU--A 1621 AAC-G-AUGA U--UA-CU-- -------A|G -CU-GU-UUG -UG------- ---------- 1681 -(AUA-UU)A ---------- ---------- ---------- --------CA -AUAAG-UGG 1741 CU--AA---- --GC-(GAA- ---A)G-CG- AUAA-GUAAU C|C|A-CCU- G-GGGAGUAC 1801 GCC-G---(G CAA)---C-G GU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGAGG-AAC A-U-GU-GGU -UUAAUU-CG -(AUGAUA-C G)--CGAGGA 1921 A-CCUUA-CC CGG-GC-UUG AAA-UG|--- -------C-A ---UCUG--- -AU----CGA 1981 -UCG-G--(- GAAA-)-CCG -A-UCUU--- C--------- ---UA----- --(GC----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------A A-)------- UA-------- -----G---| CAG-AU-GCG |---G|A--G 2161 GU-GC-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GC-C(-GUG A)-GGUGU-C 2221 GG-C-(UUAA -GU)-GCCAU AA-------- CGAG-C--GC AACCC-AC-A |-UU--GUU- 2281 AG--UUAC-U AA-CAG---- ---------- ---------- ---G(---UC ---AAG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CUG|A 2701 G-GA-CU-C- U-GAC-AA-G A-CU-G-CCA --GC(-G--U AA)-GCU-GC -GAGG-A-AG 2761 G-UG-UGG-A UG-ACG--UC -A-AAUC-AG CAC-G-GC-C CUUAC-G-UC -CC--GGGC- 2821 G-ACA-CA-C GUG--UUACA AUGGG-G-GG -UA--CAGAG GGU-U-G-C- UA-CUU-G(G 2881 -UGA)CAAG- ---------- AU-GCUAA-U CUCG--AAAG -CC-U-CUC- CCAGUUCGGA 2941 U-UGGAGUC- (UGCAAC-U- C)-GACUCCA -UGAAGC-UG -GAUU-CGC- -UAGUA-AUC 3001 GC-GCA-(UC -AGCCAU)-G GCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-AAG--- --CCA-UGGA A--GC-UGG- GG-GU-ACCU -GAA-G-UAC 3121 G-U------- -AA-CC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGA------ G-CG-UC-CU A-GGGU-AAA ACU-AG-UG- ACU-NGGG-C 3301 U---ANGUC- GUAA-CAA.. .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS env.spUN77 4376 bp RNA RNA 02-JUL-1998 DEFINITION clone UN77.. ACCESSION No information KEYWORDS No information. SOURCE clone UN77. ORGANISM clone UN77. REFERENCE 1 AUTHORS Ohkuma,M. and Kudo,T. TITLE Phylogenetic diversity of the intestinal bacterial community in the termite Reticulitermes speratus JOURNAL Appl. Environ. Microbiol. 62, 461-468 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: D63631 BASE COUNT 87 a 61 c 97 g 81 t 4050 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) U-A-C-GGAG |-GAUG-C-- 1201 GAG-CGUUAU CC-GGAUUUA -UU-GGGU|U UAAA-GGGU- GCG-CAG-GC -G|-GG-CU- 1261 U-UU-AAG|U CAG---CGGU G-AAA-UC-U CG-GGG-C(- UU-A)A-CUC -CG-A-AAC- 1321 -UNCC-GUUG A-AAC-UGGG A-GUCUU-GA GUA-----UG G-AU-GAAGU AGG-C|GGAA 1381 UU-CGUUGU- GUA-GCG(-G UGACA)-UGC -UU-AGAU-A UA-ACGAGG- AACU-CCGA- 1441 -U-U-GC(-G UA-G)GCAG- -CUUACUA-- ---------- ---------- ---------A 1501 GCC--AU-AA CUGACG-CUC AA-G------ -------CA- C-GAAA-GC- GU-GGG-GA- 1561 UC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA U--UA-CU-- -------A|G -UU-GU-AUG -CG------- ---------- 1681 -(AUA-UA)C ---------- ---------- ---------- ---------C -GUAUG-UGA 1741 CU--AA---- --GC-(G... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS env.spUN85 4376 bp RNA RNA 02-JUL-1998 DEFINITION clone UN85.. ACCESSION No information KEYWORDS No information. SOURCE clone UN85. ORGANISM clone UN85. REFERENCE 1 AUTHORS Ohkuma,M. and Kudo,T. TITLE Phylogenetic diversity of the intestinal bacterial community in the termite Reticulitermes speratus JOURNAL Appl. Environ. Microbiol. 62, 461-468 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: D63637 BASE COUNT 87 a 61 c 98 g 81 t 4049 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) U-A-C-GGAG |-GAUG-C-- 1201 GAG-CGUUAU CC-GGAUUUA -UU-GGGU|U UAAA-GGGU- GCG-CAG-GC -G|-GG-CU- 1261 U-UU-AAG|U CAG---CGGU G-AAA-UC-U CG-GGG-C(- UU-A)A-CUC -CG-A-AAC- 1321 -UGCC-GUUG A-AAC-UGGG A-GUCUU-GA GUA-----UG G-AU-GAAGU AGG-C|GGAA 1381 UU-CGUUGU- GUA-GCG(-G UGACA)-UGC -UU-AGAU-A UA-ACGAGG- AACU-CCGA- 1441 -U-U-GC(-G UA-G)GCAG- -CUUACUA-- ---------- ---------- ---------A 1501 GCC--AU-AA CUGACG-CUC AA-G------ -------CA- C-GAAA-GC- GU-GGG-GA- 1561 UC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA U--UA-CU-- -------A|G -UU-GU-AUG -CG------- ---------- 1681 -(AUA-UA)C ---------- ---------- ---------- ---------C -GUAUG-UGA 1741 CU--AA---- --GC-(G... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS env.spUN27 4376 bp RNA RNA 02-JUL-1998 DEFINITION clone UN27.. ACCESSION No information KEYWORDS No information. SOURCE clone UN27. ORGANISM clone UN27. REFERENCE 1 AUTHORS Ohkuma,M. and Kudo,T. TITLE Phylogenetic diversity of the intestinal bacterial community in the termite Reticulitermes speratus JOURNAL Appl. Environ. Microbiol. 62, 461-468 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: D63609 BASE COUNT 92 a 59 c 91 g 82 t 4052 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) U-A-C-GGAG |-GAUG-C-- 1201 GAG-CNUUAU CC-GGAUUUA -UU-GGGU|U UAAA-GGGU- GCG-CAG-GC -G|-GG-CU- 1261 A-UU-AAG|U CAG---CGGU G-AAA-UA-U UC-AGG-C(- UC-A)A-CCU -GA-A-GAC- 1321 -UGCC-GUUN A-AAC-UGUU A-GCCUU-GA GUA-----UA G-AU-GAAGU AGG-C|GGAA 1381 UU-CGUUGU- GUA-GCG(-G UGACA)-UGC -UU-AGAU-A UA-ACGAGG- AACU-CCGA- 1441 -U-U-GC(-G UA-G)GCAG- -CUUACUA-- ---------- ---------- ---------A 1501 ACU--AU-AA CUGACG-NUC AU-G------ -------CA- C-GAAA-GC- NU-GGG-GA- 1561 UC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA U--UA-CU-- -------A|G -UU-GC-AUG -CG-A----- ---------- 1681 -(UAU-GA)- ---------- ---------- ---------- --------UA -GUAUG-UGA 1741 CC--AA---- --GC-(G... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS env.spUN5 4376 bp RNA RNA 02-JUL-1998 DEFINITION clone UN5.. ACCESSION No information KEYWORDS No information. SOURCE clone UN5. ORGANISM clone UN5. REFERENCE 1 AUTHORS Ohkuma,M. and Kudo,T. TITLE Phylogenetic diversity of the intestinal bacterial community in the termite Reticulitermes speratus JOURNAL Appl. Environ. Microbiol. 62, 461-468 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: D63621 BASE COUNT 91 a 60 c 92 g 82 t 4051 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) U-A-C-GGAG |-GAUG-C-- 1201 GAG-CNUUAU CC-GGAUUUA -UU-GGGU|U UAAA-GGGU- GCG-CAG-GC -G|-GG-CU- 1261 A-UU-AAG|U CAG---CGGU G-AAA-UA-U UC-AGG-C(- UC-A)A-CCU -GA-A-GAC- 1321 -UGCC-GUUG A-AAC-UGUU A-GCCUU-GA GUA-----UA G-AU-GAAGU AGG-C|GGAA 1381 UU-CGUUGU- GUA-GCG(-G UGACA)-UGC -UU-AGAU-A UA-ACGAGG- AACU-CCGA- 1441 -U-U-GC(-N UA-G)GCAG- -CUUGCUA-- ---------- ---------- ---------A 1501 ACU--AU-AA CUGACG-CUC AU-G------ -------CA- C-GAAA-GC- NU-GGG-GA- 1561 UC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA U--UA-CU-- -------A|G -UU-GC-AUG -CG-A----- ---------- 1681 -(UAU-GA)- ---------- ---------- ---------- --------UA -GUAUG-UGA 1741 CC--AA---- --GC-(G... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS env.spUN26 4376 bp RNA RNA 02-JUL-1998 DEFINITION clone UN26.. ACCESSION No information KEYWORDS No information. SOURCE clone UN26. ORGANISM clone UN26. REFERENCE 1 AUTHORS Ohkuma,M. and Kudo,T. TITLE Phylogenetic diversity of the intestinal bacterial community in the termite Reticulitermes speratus JOURNAL Appl. Environ. Microbiol. 62, 461-468 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: D63608 BASE COUNT 92 a 61 c 94 g 81 t 4048 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) U-A-C-GGAG |-GAUG-C-- 1201 GAG-CGUUAU CC-GGAUUUA -UU-GGGU|U UAAA-GGGU- GCG-CAG-GC -G|-GG-CU- 1261 A-UU-AAG|U CAG---CGGU G-AAA-UA-U UC-AGG-C(- UC-A)A-CCU -GA-A-GAC- 1321 -UGCC-GUUG A-AAC-UGUU A-GCCUC-GA GUA-----UA G-AU-GAAGU AGG-C|GGAA 1381 UU-CGUUGU- GUA-GCG(-G UGACA)-UGC -UU-AGAU-A UA-ACGAGG- AACU-CCGA- 1441 -U-U-GC(-G UA-G)GCAG- -CUUACUA-- ---------- ---------- ---------A 1501 ACU--AU-AA CUGACG-CUC AU-G------ -------CA- C-GAAA-GC- GU-GGG-GA- 1561 UC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA U--UA-CU-- -------A|G -UU-GC-AUG -CG------- ---------- 1681 -(AUA-UG)A U--------- ---------- ---------- ---------A -GUAUG-UGA 1741 CC--AA---- --GC-(G... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS env.spUN19 4376 bp RNA RNA 02-JUL-1998 DEFINITION clone UN19.. ACCESSION No information KEYWORDS No information. SOURCE clone UN19. ORGANISM clone UN19. REFERENCE 1 AUTHORS Ohkuma,M. and Kudo,T. TITLE Phylogenetic diversity of the intestinal bacterial community in the termite Reticulitermes speratus JOURNAL Appl. Environ. Microbiol. 62, 461-468 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: D63604 BASE COUNT 92 a 60 c 92 g 82 t 4050 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) U-A-C-GGAG |-GAUG-C-- 1201 GAG-CGUUAU CC-GGAUUUA -UU-GGGU|U UAAA-GGGU- GCG-CAG-GC -G|-GG-CU- 1261 A-UU-AAG|U CAG---CGGU G-AAA-UA-U UC-AGG-C(- UC-A)A-CCU -GA-A-GAC- 1321 -UGCC-GUUG A-AAC-UGUU A-GCCUU-GA GUA-----UA G-AU-GAAGU AGG-C|GGAA 1381 UU-CGUUGU- GUA-GCG(-G UGACA)-UGC -UU-AGAU-A UA-ACGAGG- AACU-CCGA- 1441 -U-U-GC(-N UA-G)GCAG- -CUUACUA-- ---------- ---------- ---------A 1501 ACU--AU-AA CUGACG-CUC AU-G------ -------CA- C-GAAA-GC- NU-GGG-GA- 1561 UC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA U--UA-CU-- -------A|G -UU-GC-AUG -CG------- ---------- 1681 -(AUA-UG)A U--------- ---------- ---------- ---------A -GUAUG-UGA 1741 CC--AA---- --GC-(G... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS env.UN108 4376 bp RNA RNA 02-JUL-1998 DEFINITION clone UN108.. ACCESSION No information KEYWORDS No information. SOURCE clone UN108. ORGANISM clone UN108. REFERENCE 1 AUTHORS Ohkuma,M. and Kudo,T. TITLE Phylogenetic diversity of the intestinal bacterial community in the termite Reticulitermes speratus JOURNAL Appl. Environ. Microbiol. 62, 461-468 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: D63593 BASE COUNT 92 a 60 c 94 g 82 t 4048 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) U-A-C-GGAG |-GAUG-C-- 1201 GAG-CGUUAU CC-GGAUUUA -UU-GGGU|U UAAA-GGGU- GCG-CAG-GC -G|-GG-CU- 1261 A-UU-AAG|U CAG---CGGU G-AAA-UA-U UC-AGG-C(- UC-A)A-CCU -GA-A-GAC- 1321 -UGCC-GUUG A-AAC-UGUU A-GCCUU-GA GUA-----UA G-AU-GAAGU AGG-C|GGAA 1381 UU-CGUUGU- GUA-GCG(-G UGACA)-UGC -UU-AGAU-A UA-ACGAGG- AACU-CCGA- 1441 -U-U-GC(-G UA-G)GCAG- -CUUACUA-- ---------- ---------- ---------A 1501 ACU--AU-AA CUGACG-CUC AU-G------ -------CA- C-GAAA-GC- GU-GGG-GA- 1561 UC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA U--UA-CU-- -------A|G -UU-GC-AUG -CG------- ---------- 1681 -(AUA-UG)A U--------- ---------- ---------- ---------A -GUAUG-UGA 1741 CC--AA---- --GC-(G... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS 2.7.1.1.3 4376 bp RNA RNA 09-JAN-1999 DEFINITION 2.7.1.1.3 BAC.FRAGILIS_SUBGROUP. ACCESSION No information KEYWORDS No information. SOURCE 2.7.1.1.3 BAC.FRAGILIS_SUBGROUP. ORGANISM 2.7.1.1.3 BAC.FRAGILIS_SUBGROUP. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 0 a 0 c 0 g 0 t 4376 others ORIGIN 1 x~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~-- ------~~~~ 541 ~~~~~~---- -~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~---~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- 1681 -(~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- -------~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~----~~~ 1981 ~~~~-~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~--- --~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~------ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~---~~ ---~~~--~~ 2341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- 3181 ---------- ---------- ---------- ------~)~~ ~~~~~~~~~~ ~~~~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Bac.thetai 4376 bp RNA RNA 02-JUL-1998 DEFINITION Bacteroides thetaiotaomicron str. E50 VPI 5482 (T). ACCESSION No information KEYWORDS No information. SOURCE Bacteroides thetaiotaomicron str. E50 VPI 5482 (T). ORGANISM Bacteroides thetaiotaomicron. REFERENCE 1 AUTHORS Gherna,R. and Woese,C.R. TITLE A partial phylogenetic analysis of the "Flavobacter-Bacteroides" phylum: basis for taxonomic restructuring JOURNAL Syst. Appl. Microbiol. 15, 513-521 (1992) STANDARD No information COMMENTS Organism information Culture collection: VPI 5482 (T) Sequence information (bases 1 to 4376) Corresponding GenBank entry: M58763 VPI 5482 (T) = NCTC 10582 = ATCC 29148 (T) biol_source= human feces isolate_name= E50 NB: ATCC 29148 removed because didnot receive culture from ATCC BASE COUNT 395 a 311 c 419 g 340 t 2911 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~NCU UNUACAAUGA AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAU -NAAC-GC-- UAGC-UAC-A -GGC-UU--A ACAC-AUGCA A-GUC-NAGG 121 G--GC-AG-C AU-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- UUCAGUU-UG (--CU----- ---------- ---------- 241 --------UG -)CA-AACUG GA-------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- AUG|-GC--G ACCG-GCGC- 361 -A-CG-GG-U GAGU---AAC -AC-GUAUC- CAA--CCU-G C-CGAU---A -ACUC-G-GG 421 -GAU-AG-CC U--------- ------UU-- C(-GAAA-)G -AAAG-A--U UAAUACC-CN 481 AU-GGU---- ---------- -------A-U AA-U--C-AG ---ACC-(-- --------GC 541 AU-------- -)-NGU---C UU-RU----U AU--UAAA-- ---GA----- ---------- 601 --(------- ----AUU--- ---)------ ---------| -----U--C- G--GUU---- 661 ----AUCG-- AUG---G-|G GAUGC----- -GU|----UC C--AUUA-G- GCA-G---UU 721 GG-UG-AG-( GU-AAC-GG) -C-UCACN-N A|-ACC-UU- CGA------- -----UG-GA 781 U-AG-G-GG| -U-UCU--(G -AGA)-GGAA ----GG-U-- CCC-C|C-AC -AUUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AAA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 AGG-AAUAUU G-GUCAAU-- GG-GC-(GCA G)-GCC-UGA ACCA|-GCCA AGUA-GC-GU 961 G-A-AG-G-A U-GAC--U-G CC(C-UA-U- -G)GG-UUGU AAA--CUUC| UUUU-AU-AU 1021 --GG-GAA-- UA-AAGU-UU --UCC-A--( -----CGUG- ---------) --UG-GA-AU 1081 ---------- -------U-U U-GU-AUGU- A-CCA-U-AU G-AA--UAAG ---------G 1141 -AUCGGCU-A ACUCC-GUG( CCA--GCAGC CNCGNUN-A) U-A-C-GGAG |-NAUC-C-- 1201 GAG-CGUUAU CC-GGAUUUA -UU-GGGU|U UAAA-GGGA- GCG-UAG-GU -G|-GA-CA- 1261 G-UU-AAG|U CAG---UUGU G-AAA-GU-U UG-CGG-C(- UC-A)A-CCG -UA-A-AAU- 1321 -UGCA-GUUG A-UAC-UGGC U-GUCUU-GA GUA-----CA G-UA-GAGGU GGG-C|GGAA 1381 UU-CGUGGU- GUA-GCG(-G UGAAA)-UGC -UU-AGAU-A UC-ACGAAG- AACU-CCGA- 1441 -U-U-GC(-G AA-G)GCAG- -CUCACUG-- ---------- ---------- ---------G 1501 ACU--GC-AA CUGACA-CUG AU-G------ -------CU- C-GAAA-GU- GU-GGG-UA- 1561 UC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- A-CA-GU--A 1621 AAC-G-AUGA A--UA-CU-- -------C|G -CU-GU-UUG -CG------- ---------- 1681 -(AUA-UA)C ---------- ---------- ---------- ---------A -GUAAG-CGG 1741 CC--AA---- --GC-(GAA- ---A)G-CA- UUAA-GUAUU C|C|A-CCU- G-GGGAGUAC 1801 GCC-G---(G CAA)---C-G GU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CN--G 1861 C-A--CA-AG CGGAGG-AAC A-U-GU-GGU -UUAAUU-CG -(AUGAUA-C G)--CGAGGA 1921 A-CCUUA-CC CGG-GC-UUA AAU-UG|--- -------C-A ---UUUG--- -AA----UAU 1981 -AUU-G--(- GAAA-)-CAG -U-AUAG--- ---------- ---CC----- --(GY----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------A A-)------- GG-------- ---------| CAA-AU-GUG |---A|A--G 2161 GU-GC-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GC-C(-GUG A)-GGUGU-C 2221 GG-C-(UUAA -GU)-GCCAU AA-------- CGAG-C--GC AACCC-UU-A |-UC--UUU- 2281 AG--UUAC-U AA-CAG---- ---------- ---------- ---G(---UC ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CUG|A 2701 G-GA-CU-C- U-AGA-GA-G A-CU-G-CCG --UC(-G--U AA)-GAU-GU -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AG CAC-N-GC-C CNUAC-G-UC -CG--GGGC- 2821 U-ACA-CA-C GUG--UUACA AUGGG-G-GG -UA--CAGAA GGC-A-G-C- UA-CCU-G(G 2881 -UGA)CAGG- ---------- AU-GCUAA-U CCCA--AAAG -CC-U-CUC- UCAGUUCGGA 2941 U-CGAAGUC- (UGCAAC-C- C)-GACUUCG -UGAAGC-UG -GAUU-CGC- -UAGUA-AUC 3001 GC-GCA-(UC -AGCCAU)-G GCG-CGGUG- AAUAC-GUU- CCC-GGG-CN UUGUA----C 3061 ACACCGCCC- GUC-AAG--- --CCA-UGAA A--GC-CGG- GG-GU-ACCU -GAA-G-UAC 3121 G-U------- -AA-CC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGA------ G-CG-UC-CU A-GGGU-AAA ACU-GG-UA- AUU-GGGG-C 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Bac.theta2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Bacteroides thetaiotaomicron str. E50 ATCC 29148 (T). ACCESSION No information KEYWORDS No information. SOURCE Bacteroides thetaiotaomicron str. E50 ATCC 29148 (T). ORGANISM Bacteroides thetaiotaomicron. REFERENCE 1 AUTHORS Paster,B.J., Dewhirst,F.E., Olsen,I. and Fraser,G.J. TITLE Phylogeny of Bacteroides, Prevotella, and Porphyromonas spp. and related bacteria JOURNAL J. Bacteriol. 176, 725-732 (1994) STANDARD No information COMMENTS Organism information Culture collection: ATCC 29148 (T) Sequence information (bases 1 to 4376) Corresponding GenBank entry: L16489 ATCC 29148 (T) = VPI 5482 (T) = NCTC 10582 biol_source= human feces isolate_name= E50 BASE COUNT 390 a 314 c 421 g 333 t 2918 others ORIGIN 1 .......... .......... .......... ....CANUGA AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAU -NAAC-GC-- UAGC-UAC-A -GGC-UU--A ACAC-AUGCA A-GUC-GAGG 121 G--GC-AG-C AU-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- UUCNNUU-UG (--CU----- ---------- ---------- 241 --------UG -)CA-AACUN NA-------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- AUG|-GC--G ACCG-GCGC- 361 -A-CG-GG-U GAGU---AAC -AC-GUAUC- CAA--CCU-G C-CGAU---A -ACUC-G-GG 421 -GAU-AG-CC U--------- ------UU-- C(-GAAA-)G -AAAG-A--U UAAUACC-CG 481 AU-GGC---- ---------- -------A-U AA-U--C-AN ---ACC-(-- --------GC 541 AU-------- -)-GGU---C UU-AU----U AU--UAAA-- ---GA----- ---------- 601 --(------- ----AUU--- ---)------ ---------| -----U--C- G--GUU---- 661 ----AUCG-- AUG---G-|G GAUGC----- -GU|----UC C--AUUA-G- GCA-G---UU 721 GG-UG-AG-( GU-AAC-GG) -C-UCACN-A A|-ACC-UU- CGA------- -----UG-GA 781 U-AG-G-GG| -U-UCU--(G -AGA)-GGAA ----GG-U-- CCC-C|C-AC -AUUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -NAA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 AGG-AAUAUU G-GUCAAU-- GG-GC-(GCA G)-GCC-UNA ACCA|-GCCA AGUA-GC-GU 961 G-A-AG-G-A U-GAC--U-G CC(C-UA-U- -G)GG-UUGU AAA--CUNC| UNUU-AU-AU 1021 --GG-GAA-- UA-AAGU-NU --UCC-A--( -----CGUG- ---------) --UG-GA-AU 1081 ---------- -------U-U U-GU-AUGU- A-CCA-U-AU G-AA--UAAG ---------G 1141 -AUCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUN-A) U-A-C-GGAG |-GAUC-C-- 1201 GAG-CGUUAU CC-GGAUUUA -UU-GGGU|U UAAA-GGGA- GCG-UAG-GU -G|-GA-CA- 1261 G-UU-AAG|U CAG---UUGU G-AAA-GU-U UG-CGG-C(- UC-A)A-CCG -UA-A-AAU- 1321 -UGCA-GUUG A-UAC-UGGC U-GUCUU-GA GUA-----CA G-UA-GAGGU GGG-C|GGAA 1381 UU-CGUGGU- GUA-GCG(-G UGAAA)-UGC -UU-AGAU-A UC-ACGAAG- AACU-CCGA- 1441 -U-U-GC(-G AA-G)GCAG- -CUCACUG-- ---------- ---------- ---------G 1501 ACU--GC-AA CUGACA-CUG AU-G------ -------CU- C-GAAA-GU- GU-GGG-UA- 1561 UC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- A-CA-GU--A 1621 AAC-G-AUGA A--UA-CU-- -------C|G -CU-GU-UUG -CG------- ---------- 1681 -(AUA-UA)C ---------- ---------- ---------- ---------A -GUAAG-CGG 1741 CC--AA---- --GC-(GAA- ---A)G-CA- UUAA-GUAUU C|C|A-CCU- G-GGGAGUAC 1801 GCC-G---(G CAA)---C-G GU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGAGG-AAC A-U-GU-GGU -UUAAUU-CG -(AUGAUA-C G)--CGAGGA 1921 A-CCUUA-CC CGG-GC-UUA AAU-UG|--- -------C-A ---UUUG--- -AA----UAA 1981 -UCU-G--(- GAAA-)-CAG -G-UUAG--- ---------- ---CC----- --(GC----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------A A-)------- GG-------- ---------| CAA-AU-GUG |---A|A--G 2161 GU-GC-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GC-C(-GUG A)-GGUGU-C 2221 GG-C-(UUAA -GU)-GCCAU AA-------- CGAG-C--GC AACCC-UU-A |-UC--UUU- 2281 AG--UUAC-U AA-CAG---- ---------- ---------- ---G(---UC ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CUG|A 2701 G-GA-CU-C- U-AGA-GA-G A-CU-G-CCG --UC(-G--U AA)-GAU-GU -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AG CAC-G-GC-C CUUAC-G-UC -CG--GGGC- 2821 U-ACA-CA-C GUG--UUACA AUGGG-G-GG -UA--CAGAA GGC-A-G-C- UA-CCU-G(G 2881 -UGA)CAGG- ---------- AU-GCUNA-U CCCA--AAAG -CC-U-CUC- UCAGUUCGGA 2941 U-CGAAGUC- (UGCAAC-C- C)-GACUUCG -UGAAGC-UG -GAUU-CGC- -UAGUA-AUC 3001 GC-GCA-(UC -AGCCAU)-G GCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-AAN--- --CCA-UGAN A--GC-CGG- GG-GU-ACCU -GAA-G-UAC 3121 G-U------- -AA-CC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGA------ G-CG-UC-CU A-GGGU-AAA ACU-GG-UA- AUU-GGGG.. 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Bac.ovatus 4376 bp RNA RNA 02-JUL-1998 DEFINITION Bacteroides ovatus. ACCESSION No information KEYWORDS No information. SOURCE Bacteroides ovatus. ORGANISM Bacteroides ovatus. REFERENCE 1 AUTHORS Paster,B.J., Dewhirst,F.E., Olsen,I. and Fraser,G.J. TITLE Phylogeny of Bacteroides, Prevotella, and Porphyromonas spp. and related bacteria JOURNAL J. Bacteriol. 176, 725-732 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: L16484 biol_source= human feces BASE COUNT 387 a 304 c 419 g 331 t 2935 others ORIGIN 1 .......... .......... .......... ......AUGA AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAU -GAAC-GC-- UAGC-UAC-A -GGC-UU--A ACAC-AUGCA A-GUC-GAGG 121 G--GC-AG-C AU-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- UUUAGUU-UG (--CU----- ---------- ---------- 241 --------UG -)CA-AACUG AA-------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- AUG|-GC--G ACCG-GCGC- 361 -A-CG-GG-U GAGU---AAC -AC-GUAUC- CAA--CCU-G C-CGAU---A -ACUC-C-GG 421 -GAU-AG-CC U--------- ------UU-- C(-GAAA-)G -AAAG-A--U UAAUACC-GG 481 AU-RGY---- ---------- -------A-U AY-G--A-AC ---AUC-(-- --------GC 541 AU-------- -)-GAU---N NN-NU----U AU--UAAA-- ---GA----- ---------- 601 --(------- ----AUU--- ---)------ ---------| -----U--C- G--GUU---- 661 ----AUCG-- AUG---G-|G GAUGC----- -GU|----UC C--AUUA-G- UUU-G---UU 721 GG-CG-GG-( GU-AAC-GG) -C-CCACC-A A|-GAC-UA- CGA------- -----UG-GA 781 U-AG-G-GG| -U-UCU--(G -AGA)-GGAA ----GG-U-- CCC-C|C-AC -AUUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -NAA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 AGG-AAUAUU G-GUCAAU-- GG-GC-(GAG A)-GCC-UGA ACCA|-GCCA AGUA-GC-GU 961 G-A-AG-G-A U-GAA--G-G CU(C-UA-U- -G)GG-UCGU AAA--CUNC| UUUU-AU-AU 1021 --GG-GAA-- UA-AAGU-GU --UCC-A--( -----CGUG- ---------) --UG-GA-AU 1081 ---------- -------U-U U-GU-AUGU- A-CCA-U-AU G-AA--UAAG ---------G 1141 -AUCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUN-A) U-A-C-GGAG |-GAUC-C-- 1201 NAG-CGUUAU CC-GGAUUUA -UU-GGGU|U UAAA-GGGA- GCG-UAG-GU -G|-GA-UU- 1261 G-UU-AAG|U CAG---UUGU G-AAA-GU-U UG-CGG-C(- UC-A)A-CCG -UA-A-AAU- 1321 -UGCA-GUUG A-AAC-UGGC A-GUCUU-GA GUA-----CA G-UA-GAGGU GGG-C|GGAA 1381 UU-CGUGGU- GUA-GCG(-G UGAAA)-UGC -UU-NGAU-A UC-ACGAAG- AACU-CCGA- 1441 -U-U-GC(-G AA-G)GCAG- -CUCACUN-- ---------- ---------- ---------G 1501 ACU--GU-UA CUGACA-CUG AU-G------ -------CU- C-GAAA-GU- GU-GGG-UA- 1561 UC-AAA-CA- -GG(AUUN-G AUAC)-CCU- ----GGUA-G UC----CAC- A-CA-GU--A 1621 AAC-G-AUGA A--UA-CU-- -------C|G -CU-GU-UUG -CG------- ---------- 1681 -(AUA-UA)C ---------- ---------- ---------- ---------A -GUAAG-CGG 1741 CC--AA---- --GC-(GAA- ---A)G-CA- UUAA-GUAUU C|C|A-CCU- G-GGGAGUAC 1801 GCC-G---(G CAA)---C-G GU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGAGG-AAC A-U-GU-GGU -UUNAUU-CG -(AUGNUA-C G)--CGAGGA 1921 A-CCUUA-CC CGG-GC-UUN AAU-UG|--- -------C-A ---WCWG--- -AA----UAU 1981 -AUW-G--(- GAAA-)-CWR -U-AUAG--- ---------- ---CC----- --(GY----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------A A-)------- GG-------- ---------| CAN-UU-GUG |---A|A--G 2161 GU-GC-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GC-C(-GUG A)-GGUGU-C 2221 GG-C-(UUNA -GU)-GCCAU AA-------- CGAG-C--GC AACCC-UU-A |-UC--UUU- 2281 AG--UUAC-U AA-CAG---- ---------- ---------- ---G(---UU ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CUG|A 2701 G-GA-CU-C- U-AGA-GA-G A-CU-G-CCG --UC(-G--U AA)-GAU-GU -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AG CAC-G-GC-C CUUAC-G-UC -CG--GGGC- 2821 U-ACA-CA-C GUG--UUACA AUGGG-G-GG -UA--CAGAA GGC-R-G-C- UA-CCU-G(G 2881 -YGA)CAGG- ---------- AU-GCUAA-U CCCA--AAAA -CC-U-CUC- UCAGUUCGGA 2941 U-CGAAGUC- (UGCAAC-C- C)-GACUUCG -UGAAGC-UG -GAUU-CGC- -UAGUA-AUC 3001 GC-GCA-(UC -AGCCAU)-G GCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-AAG--- --CCA-UGAA A--GC-CGG- GG-GU-ACCU -GAA-G-UAC 3121 G-U------- -AA-CC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGA------ G-CG-UC-CU A-GGGU-AAA ACU-GG-UA- AU........ 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Bac.fragil 4376 bp RNA RNA 02-JUL-1998 DEFINITION Bacteroides fragilis. ACCESSION No information KEYWORDS No information. SOURCE Bacteroides fragilis. ORGANISM Bacteroides fragilis. REFERENCE 1 AUTHORS Weisburg,W.G., Oyaizu,Y., Oyaizu,H. and Woese,C.R. TITLE Natural relationship between Bacteroides and Flavobacteria JOURNAL J. Bacteriol. 164, 230-236 (1985) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: M61006|g143965 NB: M61006 updates M11656 BASE COUNT 405 a 329 c 446 g 356 t 2840 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~ACU UUUACAAUGA AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAU -GAAC-GC-- UAGC-UAC-A -GGC-UU--A ACAC-AUGCA A-GUC-GAGG 121 G--GC-AU-C AG-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -GAAGAA-AG (--CU----- ---------- ---------- 241 --------UG -)CU-UUCUU U--------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- CUG|-GC--G ACCG-GCGC- 361 -A-CG-GG-U GAGU---AAC -AC-GUAUC- CAA--CCU-G C-CCUU---U -ACUC-G-GG 421 -GAU-AG-CC U--------- ------UU-- C(-GAAA-)G -AAAG-A--U UAAUACC-CG 481 AU-AGC---- ---------- -------A-U AA-U--G-AU ---UCC-(-- --------GC 541 AU-------- -)-GGU---U UC-AU----U AU--UAAA-- ---GG----- ---------- 601 --(------- ----AUU--- ---)------ ---------| -----C--C- G--GUA---- 661 ----AAGG-- AUG---G-|G GAUGC----- -GU|----UC C--AUUA-G- GUN-G---UU 721 GG-UG-AG-( GU-AAC-GG) -C-UCACC-A A|-GCC-UU- CGA------- -----UG-GA 781 U-AG-G-GG| -U-UCU--(G -AGA)-GGAA ----GG-U-- CCC-C|C-AC -AUUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AAA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 AGG-AAUAUU G-GUCAAU-- GG-GC-(GCU A)-GCC-UGA ACCA|-GCCA AGUA-GC-GU 961 G-A-AG-G-A U-GAA--G-G CU(C-UA-U- -G)GG-UCGU AAA--CUUC| UUUU-AU-AU 1021 --AA-GAA-- UA-AAGU-GC --AGU-A--( -----UGUA- ---------) --UA-CU-GU 1081 ---------- -------U-U U-GU-AUGU- A-UUA-U-AU G-AA--UAAG ---------G 1141 -AUCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GAUC-C-- 1201 GAG-CGUUAU CC-GGAUUUA -UU-GGGU|U UAAA-GGGA- GCG-UAG-GU -G|-GA-CU- 1261 G-GU-AAG|U CAG---UUGU G-AAA-GU-U UG-CGG-C(- UC-A)A-CCG -UA-A-AAU- 1321 -UGCA-GCUG A-UAC-UGUC A-GUCUU-GA GUA-----CA G-UA-GAGGU GGG-C|GGAA 1381 UU-CGUGGU- GUA-GCG(-G UGAAA)-UGC -UU-AGAU-A UC-ACGAAG- AACU-CCGA- 1441 -U-U-GC(-G AA-G)GCAG- -CUCACUG-- ---------- ---------- ---------G 1501 ACU--GC-AA CUGACA-CUG AU-G------ -------CU- C-GAAA-GU- GU-GGG-UA- 1561 UC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- A-CA-GU--A 1621 AAC-G-AUGA A--UA-CU-- -------C|G -CU-GU-UUG -CG------- ---------- 1681 -(AUA-UA)C ---------- ---------- ---------- ---------A -GUAAG-CGG 1741 CC--AA---- --GC-(GAA- ---A)G-CA- UUAA-GUAUU C|C|A-CCU- G-GGGAGUAC 1801 GCC-G---(G CAA)---C-G GU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGAGG-AAC A-U-GU-GGU -UUAAUU-CG -(AUGAUA-C G)--CGAGGA 1921 A-CCUUA-CC CGG-GC-UUA AAU-UG|--- -------C-A ---GUGG--- -AA----UGA 1981 -UGU-G--(- GAAA-)-CAU -G-UCAG--- U--------- ---GA----- --(GC----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------A A-)------- UC-------- -----A---| CCG-CU-GUG |---A|A--G 2161 GU-GC-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GC-C(-GUG A)-GGUGU-C 2221 GG-C-(UUAA -GU)-GCCAU AA-------- CGAG-C--GC AACCC-UU-A |-UC--UUU- 2281 AG--UUAC-U AA-CAG---- ---------- ---------- ---G(---UU ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CUG|A 2701 G-GA-CU-C- U-AGA-GA-G A-CU-G-CCG --UC(-G--U AA)-GAU-GU -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AG CAC-G-GC-C CUUAC-G-UC -CG--GGGC- 2821 U-ACA-CA-C GUG--UUACA AUGGG-G-GG -UA--CAGAA GGC-A-G-C- UA-GCG-G(G 2881 -UGA)CCGU- ---------- AU-GCUAA-U CCCA--AAAU -CC-U-CUC- UCAGUUCGGA 2941 U-CGAAGUC- (UGCAAC-C- C)-GACUUCG -UGAAGC-UG -GAUU-CGC- -UAGUA-AUC 3001 GC-GCA-(UC -AGCCAC)-G GCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-AAG--- --CCA-UGGG A--GC-CGG- GG-GU-ACCU -GAA-G-UAC 3121 G-U------- -AA-CC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGA------ U-CG-UC-CU A-GGGU-AAA ACU-GG-UG- ACU-GGGG-C 3301 U---AAGUC- GUAA-CAAGG UAGCC-GUAC C(GGA-A)GG UGCGGC--UG GAACACCUCC 3361 UUUC|U..~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Bac.fragi2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Bacteroides fragilis.. ACCESSION No information KEYWORDS No information. SOURCE Bacteroides fragilis. ORGANISM Bacteroides fragilis. REFERENCE 1 AUTHORS Weisburg,W.G., Oyaizu,Y., Oyaizu,H. and Woese,C.R. TITLE Natural relationship between Bacteroides and Flavobacteria JOURNAL J. Bacteriol. 164, 230-236 (1985) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: M11656|g143964 NB: Added by Bergey's to RDP Release 6.0 tree BASE COUNT 404 a 329 c 446 g 354 t 2843 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~UUACAACGA AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAU -GAAC-GC-- UAGC-UAC-A -GGC-UU--A ACAC-AUGCA A-GUC-GAGG 121 G--GC-AU-C AG-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -GAAGAA-AG (--CU----- ---------- ---------- 241 --------UG -)CU-UUCUU U--------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- CUG|-GC--G ACCG-GCGC- 361 -A-CG-GG-U GAGU---AAC -AC-GUAUC- CAA--CCU-G C-CCUU---U -ACUC-G-GG 421 -GAU-AG-CC U--------- ------UU-- C(-GAAA-)G -AAAG-A--U UAAUACC-CG 481 AU-AGC---- ---------- -------A-U AA-U--G-AU ---UCC-(-- --------GC 541 AU-------- -)-GGU---U UC-AU----U AU--UAAA-- ---GG----- ---------- 601 --(------- ----AUU--- ---)------ ---------| -----C--C- G--GUA---- 661 ----AAGG-- AUG---G-|G GAUGC----- -GU|----UC C--AUUA-G- GUU-G---UU 721 GG-UG-AG-( GU-AAC-GG) -C-UCACC-A A|-GCC-UU- CGA------- -----UG-GA 781 U-AG-G-GG| -U-UCU--(G -AGA)-GGAA ----GG-U-- CCC-C|C-AC -AUUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AAA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 AGG-AAUAUU G-GUCAAU-- GG-GC-(GCU A)-GCC-UGA ACCA|-GCCA AGUA-GC-GU 961 G-A-AG-G-A U-GAA--G-G CU(C-UA-U- -G)GG-UCGU AAA--CUUC| UUUU-AU-AU 1021 --AA-GAA-- UA-AAGU-GC --AGU-A--( -----UGUA- ---------) --UA-CU-GU 1081 ---------- -------U-U U-GU-AUGU- A-UUA-U-AU G-AA--UAAG ---------G 1141 -AUCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GAUC-C-- 1201 GAG-CGUUAU CC-GGAUUUA -UU-GGGU|U UAAA-GGGA- GCG-UAG-GU -G|-GA-CU- 1261 G-GU-AAG|U CAG---UUGU G-AAA-GU-U UG-CGG-C(- UC-A)A-CCG -UA-A-AAU- 1321 -UGCA-GCUG A-UAC-UGUC A-GUCUU-GA GUA-----CA G-UA-GAGGU GGG-C|GGAA 1381 UU-CGUGGU- GUA-GCG(-G UGAAA)-UGC -UU-AGAU-A UC-ACGAAG- AACU-CCGA- 1441 -U-U-GC(-G AA-G)GCAG- -CUCACUG-- ---------- ---------- ---------G 1501 ACU--GC-AA CUGACA-CUG AU-G------ -------CU- C-GAAA-GU- GU-GGG-UA- 1561 UC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- A-CA-GU--A 1621 AAC-G-AUGA A--UA-CU-- -------C|G -CU-GU-UUG -CG------- ---------- 1681 -(AUA-UA)C ---------- ---------- ---------- ---------A -GUAAG-CGG 1741 CC--AA---- --GC-(GAA- ---A)G-CA- UUAA-GUAUU C|C|A-CCU- G-GGGAGUAC 1801 GCC-G---(G CAA)---C-G GU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGAGG-AAC A-U-GU-GGU -UUAAUU-CG -(AUGAUA-C G)--CGAGGA 1921 A-CCUUA-CC CGG-GC-UUA AAU-UG|--- -------C-A ---GUGG--- -AA----UGA 1981 -UGU-G--(- GAAA-)-CAU -G-UCAG--- U--------- ---GA----- --(GC----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------A A-)------- UC-------- -----A---| CCG-CU-GUG |---A|A--G 2161 GU-GC-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GC-C(-GUG A)-GGUGU-C 2221 GG-C-(UUAA -GU)-GCCAU AA-------- CGAG-C--GC AACCC-UU-A |-UC--UUU- 2281 AG--UUAC-U AA-CAG---- ---------- ---------- ---G(---UU ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CUG|A 2701 G-GA-CU-C- U-AGA-GA-G A-CU-G-CCG --UC(-G--U AA)-GAU-GU -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AG CAC-G-GC-C CUUAC-G-UC -CG--GGGC- 2821 U-ACA-CA-C GUG--UUACA AUGGG-G-GG -UA--CAGAA GGC-A-G-C- UA-GCG-G(G 2881 -UGA)CCGU- ---------- AU-GCUAA-U CCCA--AAAU -CC-U-CUC- UCAGUUCGGA 2941 U-CGAAGUC- (UGCAAC-C- C)-GACUUCG -UGAAGC-UG -GAUU-CGC- -UAGUA-AUC 3001 GC-GCA-(UC -AGCCAC)-G GCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-AAG--- --CCA-UGGG A--GC-CGG- GG-GU-ACCU -GAA-G-UAC 3121 G-U------- -AA-CC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGA------ U-CG-UC-CU A-GGGU-AAA ACU-GG-UG- ACU-GGGG-C 3301 U---AAGUC- GUAA-CAAGG UAGCC-GUAC C(GGA-A)GG UGCGGC--UG GAACACCUCC 3361 UUUC|U~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Bac.unifor 4376 bp RNA RNA 02-JUL-1998 DEFINITION Bacteroides uniformis. ACCESSION No information KEYWORDS No information. SOURCE Bacteroides uniformis. ORGANISM Bacteroides uniformis. REFERENCE 1 AUTHORS Paster,B.J., Dewhirst,F.E., Olsen,I. and Fraser,G.J. TITLE Phylogeny of Bacteroides, Prevotella, and Porphyromonas spp. and related bacteria JOURNAL J. Bacteriol. 176, 725-732 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: L16486 biol_source= human and swine feces BASE COUNT 351 a 316 c 433 g 326 t 2950 others ORIGIN 1 .......... .......... .......... ...UCAAUGA AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAU -NAAC-GC-- UAGC-UAC-A -GGC-UU--A ACAC-AUGCA A-GUC-GAGG 121 G--GC-AG-C AU-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -GAACUU-AG (--CU----- ---------- ---------- 241 --------UG -)CU-AAGUU U--------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- AUG|-GC--G ACCG-GCGC- 361 -A-CG-GG-U GAGU---AAC -AC-GUAUC- CAA--CCU-G C-CGAU---G -ACUC-G-GG 421 -GAU-AG-CC U--------- ------UU-- C(-GAAA-)G -AAAG-A--U UAAUACC-CG 481 AU-GGC---- ---------- -------A-U AG-U--U-CU ---UCC-(-- --------GN 541 NU-------- -)-GGU---A GA-AC----U AU--UAAA-- ---GA----- ---------- 601 --(------- ----AUU--- ---)------ ---------| -----U--C- G--GUC---- 661 ----AUCG-- AUG---G-|G GAUGC----- -GU|----UC C--AUUA-G- GUU-G---UU 721 GG-CG-GG-( GU-AAC-GG) -C-CCACC-A A|-GCC-UN- CGA------- -----UG-GA 781 U-NG-G-GG| -U-UCU--(G -AGA)-GGAA ----GG-U-- CCC-C|C-AC -NUUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -NAA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 AGG-AAUNUU G-GUCNAU-- GG-AC-(GAG A)-GUC-UGA ACCA|-GCCA AGUN-GC-GU 961 G-A-AG-G-A U-GNN--U-G CC(C-UN-U- -G)GG-UUGU NAA--CUUC| UUUU-AU-AC 1021 --GG-GAA-- UN-AAGU-GA --GGC-A--( -----NNUG- ---------) --UG-CC-NN 1081 ---------- -------U-U U-GU-AUGU- A-CCG-U-AU G-AA--UNAG ---------G 1141 -AUCGGCU-A ACUCC-GUG( CCN--GCNGC CNCGGUN-A) U-A-C-GGAG |-GAUC-C-- 1201 NAG-CGUUAU CC-GGAUUUN -UU-NGGU|U UNAA-GGGA- GCG-UAG-GC -G|-GA-CG- 1261 C-UU-AAG|U CAG---UUGU G-AAA-GU-U UG-CGG-C(- UC-A)A-CCG -UA-A-AAU- 1321 -UGCA-GUUG A-UAC-UGGG U-GUCUU-GA GUA-----CA G-UA-GAGGC AGG-C|GGAA 1381 UU-CGUGGU- GUA-GCG(-G UGAAA)-UGC -UU-AGAU-A UC-ACGAAG- AACU-CCGA- 1441 -U-U-GC(-G AA-G)GCAG- -CUUGCUG-- ---------- ---------- ---------G 1501 ACU--GU-AA CUGACG-CUG AU-G------ -------CU- C-GAAA-GU- GU-GGG-UA- 1561 UC-NAA-CA- -GG(AUUN-G AUAC)-CCU- ----GGUA-G UC----CAC- A-CA-GU--N 1621 AAC-G-AUGA A--UA-CU-- -------C|G -CU-GU-UUG -CG------- ---------- 1681 -(AUN-UA)C ---------- ---------- ---------- ---------A -GUAAG-CGG 1741 CC--AA---- --GC-(GAA- ---A)G-CG- UUNA-GUAUU C|C|A-CCU- G-GGGAGUAC 1801 GCC-G---(G CAA)---C-G GU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGAGG-AAC A-U-GU-GGU -UUNAUU-CG -(AUGAUA-C G)--CGAGGA 1921 A-CCUUA-CC CGG-GC-UUN AAU-UG|--- -------C-A ---ACUG--- -AA----UGA 1981 -UGU-G--(- GAGA-)-CAU -G-UCAG--- ---------- ---CC----- --(GC----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------A A-)------- GG-------- ---------| CAG-UU-GUG |---A|A--G 2161 GU-GC-UGCN UN|G-UUG-- UCG-UCA|-G C-U---CG-U |GC-C(-GUG A)-GGUGU-N 2221 GG-C-(UNAA -GU)-GCCAU AA-------- CGAG-C--GC NACCC-UU-A |-UC--GAU- 2281 AG--UUAC-C AU-CAG---- ---------- ---------- ---G(---UU ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CUG|G 2701 G-GA-CU-C- U-GUC-GA-G A-CU-G-CCG --UC(-G--U NA)-GAU-GU -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AG CAC-G-GC-C NUUAC-G-UC -CG--GGGC- 2821 U-ACA-CA-C GUG--UUACA AUGGG-G-GG -UA--CAGAA GGC-A-G-C- UA-CAC-G(G 2881 -CGA)CGUG- ---------- AU-GCUAA-U CCCU--AAAG -CC-U-CUC- UCAGUUCGGA 2941 U-UGGAGUC- (UGCAAC-C- C)-GACUCCA -UGAAGC-UG -GAUU-CGC- -UAGUA-AUC 3001 GC-GCA-(UC -AGCCAC)-G GCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 NCACCGCCC- GUC-AAG--- --CCA-UGAA A--GC-CGG- GG-GU-ACCU -GAA-G-UGC 3121 G-U------- -AA-CC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGA------ G-CG-CC-CU A-GGGU-AAA ACU-GG-UG- AU........ 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Bac.vulgat 4376 bp RNA RNA 02-JUL-1998 DEFINITION Bacteroides vulgatus. ACCESSION No information KEYWORDS No information. SOURCE Bacteroides vulgatus. ORGANISM Bacteroides vulgatus. REFERENCE 1 AUTHORS Gherna,R. and Woese,C.R. TITLE A partial phylogenetic analysis of the "Flavobacter-Bacteroides" phylum: basis for taxonomic restructuring JOURNAL Syst. Appl. Microbiol. 15, 513-521 (1992) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: M58762 ATCC 8482 = VPI 4245 (T) BASE COUNT 396 a 336 c 446 g 335 t 2863 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~NU AUUACAAUGA AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAU -NAAC-GC-- UAGC-UAC-A -GGC-UU--A ACAC-AUGCA A-GUC-GAGG 121 G--GC-AG-C AU-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -GGUCUU-AG (--CU----- ---------- ---------- 241 --------UG -)CU-AAGNC N--------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- AUG|-GC--G ACCG-GCGC- 361 -A-CG-GG-U GAGU---AAC -AC-GUAUC- CAA--CCU-G C-CGUC---U -ACUC-U-UG 421 -GAC-AG-CC U--------- ------UC-- U(-GAAA-)G -GAAG-A--U UAAUACA-AG 481 AU-GGC---- ---------- -------A-U CA-U--G-AG ---UCC-(-- --------GC 541 AU-------- -)-GUU---C AC-AU----G AU--UAAA-- ---GG----- ---------- 601 --(------- ---UAUU--- ---)------ ---------| -----C--C- G--GUA---- 661 ----GACG-- AUG---G-|G GAUGC----- -GU|----UC C--AUUA-G- AUA-G---UA 721 GG-CG-GG-( GU-AAC-GG) -C-CCACC-U A|-GUC-UU- CGA------- -----UG-GA 781 U-AG-G-GG| -U-UCU--(G -AGA)-GGAA ----GG-U-- CCC-C|C-AC -AUUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AAA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 AGG-AAUAUU G-GUCAAU-- GG-GC-(GAG A)-GCC-NGA ACCA|-GCCA AGUA-GC-GU 961 G-A-AG-G-A U-GAC--U-G CC(C-UA-U- -G)GG-UUGU AAA--CUUC| UUUU-AU-AA 1021 --AG-GAA-- UA-AAGU-CG --GGU-A--( -----UGGA- ---------) --UA-CC-CG 1081 ---------- -------N-U U-GC-AUGU- A-CUU-U-AU G-AA--UAAG ---------G 1141 -AUCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-NAUC-C-- 1201 GAG-CGUUAU CC-GGAUUUA -UU-GGGU|U UAAA-GGGA- GCG-UAG-AU -G|-GA-UG- 1261 U-UU-AAG|U CAG---UUGU G-AAA-GU-U UG-CGG-C(- UC-A)A-CCG -UA-A-AAU- 1321 -UGCA-GUUG A-UAC-UGGA U-AUCUU-GA GUG-----CA G-UU-GAGGC AGG-C|GGAA 1381 UU-CGUGGU- GUA-GCG(-G UGAAA)-UGC -UU-AGAU-A UC-ACGAAG- AACU-CCGA- 1441 -U-U-GC(-G AA-G)GCAG- -CCUGCUN-- ---------- ---------- ---------A 1501 GCU--GC-AA CUGACA-UUG AG-G------ -------CU- C-GAAA-GU- GU-GGG-UA- 1561 UC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- A-CG-GU--A 1621 AAC-G-AUGA A--UA-CU-- -------C|G -CU-GU-UUG -CG------- ---------- 1681 -(AUA-UA)C ---------- ---------- ---------- ---------U -GCAAG-CGG 1741 CC--AA---- --GC-(GAA- ---A)G-CG- UUAA-GUAUU C|C|A-CCU- G-GGGAGUAC 1801 GCC-G---(G CAA)---C-G GU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CN--G 1861 C-A--CA-AG CGGAGG-AAC A-U-GU-GGU -UUAAUU-CG -(AUGAUA-C G)--CGAGGA 1921 A-CCUUA-CC CGG-GC-UUA AAU-UG|--- -------C-A ---GAUG--- -AA----UUA 1981 -CGG-U--(- GAAA-)-GCC -G-UAAG--- ---------- ---CC----- --(GC----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------A A-)------- GG-------- ---------| CAU-CU-GUG |---A|A--G 2161 GU-GC-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GC-C(-GUG A)-GGUGU-C 2221 GG-C-(UUAA -GU)-GCCAU AA-------- CGAG-C--GC AACCC-UU-G |-UU--GUC- 2281 AG--UUAC-U AA-CAG---- ---------- ---------- ---G(---UU ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CUG|A 2701 G-GA-CU-C- U-GAC-AA-G A-CU-G-CCA --UC(-G--U AA)-GAU-GU -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AG CAC-N-GC-C CUUAC-G-UC -CG--GGGC- 2821 U-ACA-CA-C GUG--UUACA AUGGG-G-GG -UA--CAGAG GGC-N-G-C- UA-CCA-C(G 2881 -CGA)GUGG- ---------- AU-GCCAA-U CCCC--AAAA -CC-U-CUC- UCAGUUCGGA 2941 C-UGGAGUC- (UGCAAC-C- C)-GACUCCA -CGAAGC-UG -GAUU-CGC- -UAGUA-AUC 3001 GC-GCA-(UC -AGCCAC)-G GCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-AAG--- --UCA-UGGG A--GC-CGG- GG-GU-ACCU -GAA-G-UGC 3121 G-U------- -AA-CC---- ---------- ---------- -----(---- -GCGA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGA------ G-CG-CC-CU A-GGGU-AAA ACU-GG-UG- ACU-GGGG-C 3301 U---AAGUC- GUAA-CAAGG UAGCN-GUAC C(GGA-A)G. .......... GAACACCUCC 3361 UUUC|U~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Prv.heplyt 4376 bp RNA RNA 02-JUL-1998 DEFINITION Prevotella heparinolytica. ACCESSION No information KEYWORDS No information. SOURCE Prevotella heparinolytica. ORGANISM Prevotella heparinolytica. REFERENCE 1 AUTHORS Paster,B.J., Dewhirst,F.E., Olsen,I. and Fraser,G.J. TITLE Phylogeny of Bacteroides, Prevotella, and Porphyromonas spp. and related bacteria JOURNAL J. Bacteriol. 176, 725-732 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: L16487 Former RDP Sids: Bac.heplyt biol_source= subgingival plaque NB: former name Bacteroides heparinolyticus BASE COUNT 363 a 340 c 444 g 314 t 2915 others ORIGIN 1 .......... .......... .......... .UUACAAUGA AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAU -NAAC-GC-- UAGC-UAC-A -GGC-UU--A ACAC-AUGCA A-GUC-GAGG 121 G--GC-AG-C AU-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -GGGCUU-AG (--CU----- ---------- ---------- 241 --------UG -)CU-AAGCC C--------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- AUG|-GC--G ACCG-GCGC- 361 -A-CG-GG-U GAGU---AAC -AC-GUAUC- CAA--CCU-U C-CGGU---A -ACUC-C-GG 421 -UAU-AG-CC U--------- ------UU-- C(-GAAA-)G -AAAG-A--U UAAUCCC-GG 481 AU-AGU---- ---------- -------A-U GG-U--G-AU ---UCC-(-- --------GC 541 AU-------- -)-GGU---U UC-UC----C AU--UAAA-- ---GG----- ---------- 601 --(------- ----AUU--- ---)------ ---------| -----C--C- G--GNU---- 661 ----ACCG-- AUG---G-|G GAUGC----- -GU|----UC C--AUUA-G- GCA-G---UU 721 GG-CG-GG-( GU-AAC-GG) -C-CCACC-A A|-ACC-UA- GGA------- -----UG-GA 781 U-AG-G-GG| -U-UCU--(G -AGA)-GGAA ----GG-U-- CCC-C|C-AC -AUUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -NAA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 AGG-AAUAUU G-GUCAAU-- GG-GC-(GGA A)-GCC-UGA ACCA|-GCCA AGUA-GC-GU 961 G-A-AG-G-A U-GAC--U-G CC(C-UA-U- -N)GG-UUGU AAA--CUUC| UUUU-AU-AA 1021 --GG-GAA-- UA-AUUG-UG --GGU-A--( -----CGCN- ---------) --NN-CC-NN 1081 ---------- -------U-U U-GC-AUGU- A-CCU-U-AU G-AA--UAAG ---------G 1141 -AUCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUN-A) U-A-C-GGAG |-GAUC-C-- 1201 GAG-CGUUAU CC-GGAUUUA -UU-GGGU|U UAAA-GGGA- GCG-UAG-GC -G|-GG-CG- 1261 C-UU-AAG|U CAG---CUGU G-AAA-GU-U UG-GGG-C(- UC-A)A-CCU -UA-A-AAU- 1321 -UGCA-GUUG A-UAC-UGGG U-GCCUU-GA GUG-----CA G-UA-UAGGC AGG-C|GGAA 1381 UU-CGUGGU- GUA-GCG(-G UGAAA)-UGC -UU-AGAU-A UC-ACGAAG- AACU-CCUA- 1441 -U-U-GC(-G AA-G)GCAG- -CUUGCUG-- ---------- ---------- ---------G 1501 AGU--GU-AA CUGACG-CUG AU-G------ -------CU- C-GAAA-GU- GU-GGG-UA- 1561 UC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- A-CA-GU--A 1621 AAC-G-AUGA A--UA-CU-- -------C|G -CU-GU-UUG -CG------- ---------- 1681 -(AUA-UN)C ---------- ---------- ---------- ---------U -GCAAG-CGG 1741 CC--AA---- --GC-(GAA- ---A)G-CG- UUAA-GUAUU C|C|A-CCU- G-GGGAGUAC 1801 GCC-G---(G CAA)---C-G GU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGAGG-AAC A-U-GU-GGU -UUAAUU-CG -(AUGAUA-C G)--CGAGGA 1921 A-CCUUA-CC CGG-GC-UUG AAU-UG|--- -------C-A ---ACCG--- -AA----UUA 1981 -UCC-G--(- GAAA-)-CGG -G-UAAG--- ---------- ----C----- --(GC----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------A A-)------- GG-------- ---------| CGG-UU-GUG |---A|A--G 2161 GU-GC-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GC-C(-GUG A)-GGUGU-C 2221 GG-C-(UUAA -GU)-GCCAU AA-------- CGAG-C--GC AACCC-UU-A |-UC--CAC- 2281 AG--UUAC-C AU-CAG---- ---------- ---------- ---G(---UG ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CUG|G 2701 G-GA-CU-C- U-GUG-GA-G A-CU-G-CCG --UC(-G--U AA)-GAU-GC -GAGG-A-AG 2761 G-GG-GGG-A UG-ACG--UC -A-AAUC-AG CAC-G-GC-C CNUAC-G-UC -CG--GGGC- 2821 U-ACA-CA-C GUG--UUACA AUGGG-G-GG -UA--CAGCA GGC-A-G-C- UC-GGC-G(G 2881 -NGA)CGCC- ---------- CG-GCCAA-U CCCU--AAAU -CC-C-CUC- UCAGUUCGGA 2941 C-UGGAGUC- (UGCAAC-C- C)-GACUCCA -CGAAGC-UG -GAUU-CGC- -UAGUA-AUC 3001 GC-GCA-(UC -AGCCAC)-G GCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-AAG--- --CCA-UGAA A--GC-CGG- GG-GU-ACCU -GAA-G-UGC 3121 G-U------- -AA-CC---- ---------- ---------- -----(---- -GUCCA---- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGA------ G-CG-CC-CU A-GGGU-AAA ACC-GG-UN- AUN-GGGG.. 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Prv.zoofor 4376 bp RNA RNA 02-JUL-1998 DEFINITION Prevotella zoogleoformans. ACCESSION No information KEYWORDS No information. SOURCE Prevotella zoogleoformans. ORGANISM Prevotella zoogleoformans. REFERENCE 1 AUTHORS Paster,B.J., Dewhirst,F.E., Olsen,I. and Fraser,G.J. TITLE Phylogeny of Bacteroides, Prevotella, and Porphyromonas spp. and related bacteria JOURNAL J. Bacteriol. 176, 725-732 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: L16488 Former RDP Sids: Bac.zoofor ATCC 33285 (T) = VPI D28K-1 biol_source= human gingival sulcus NB: former name Bacteroides zoogleoformans BASE COUNT 359 a 344 c 440 g 307 t 2926 others ORIGIN 1 .......... .......... .......... ..UACAAUGG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAN -NAAC-GC-- UAGC-UAC-A -GGC-UU--A ACAC-AUGCA A-GUC-GAGG 121 G--GC-AG-C AU-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -GGACUU-AG (--CU----- ---------- ---------- 241 --------UG -)CU-AAGUC C--------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- AUG|-GC--G ACCG-GCGC- 361 -A-CG-GG-U GAGU---AAC -AC-GUAUC- CAA--CCU-U C-CGGU---U -ACUC-C-GG 421 -UAU-AG-CC U--------- ------UU-- C(-GAAA-)G -AAAG-A--U UAAUCCC-GG 481 AU-AGU---- ---------- -------A-U GG-U--G-AU ---UCC-(-- --------GC 541 AU-------- -)-GGU---U UC-UC----C AU--UAAA-- ---GG----- ---------- 601 --(------- ----AUU--- ---)------ ---------| -----C--C- G--GNA---- 661 ----ACCG-- AUG---G-|G GAUGC----- -GU|----UC C--AUUA-G- GCG-G---UU 721 GG-CG-GG-( GU-AAC-GG) -C-CCACC-A A|-ACC-UA- CGA------- -----UG-GA 781 U-AG-G-GG| -U-UCU--(G -AGA)-GGAA ----GG-U-- CCC-C|C-AC -AUUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AAA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 AGG-AAUNUU G-GUCAAU-- GG-GC-(GUA A)-GCC-UGA ACCA|-GCCA AGUN-GC-GU 961 G-A-AG-G-A U-GAC--U-G CC(C-UA-U- -G)GG-UUGU AAA--CUUC| UUUU-AU-AA 1021 --GG-GAA-- UN-AAUU-GA --GGC-N--( -----CGC.. ......---) .......... 1081 ---------- -------U-U U-GC-AUGU- A-CCU-U-AU G-AA--UAAG ---------G 1141 -AUCGGCU-A ACUCC-GUG( CCA--GCAGC CNCGGUA-A) U-A-C-GGAG |-GAUC-C-- 1201 GAG-CGUUAU CC-GGAUUUA -UU-GGGU|U UAAA-GGGA- GCG-UAG-GC -G|-GG-CG- 1261 C-UU-AAG|U CAG---CUGU G-AAA-GU-U UG-GGG-C(- UC-A)A-CCU -UA-A-AAU- 1321 -UGCA-GUUG A-UAC-UGGG C-GUCUU-GA GUG-----CG G-CA-CAGGC AGG-C|GGAA 1381 UU-CGUGGU- GUA-GCG(-G UGAAA)-UGC -UU-AGAU-A UC-ACGAGG- AACU-CCGU- 1441 -U-C-GC(-G AA-G)GCGG- -CUUGCCG-- ---------- ---------- ---------G 1501 ACC--GU-AA CUGACG-CUG AU-G------ -------CU- C-GAAA-GU- GU-GGG-UA- 1561 UC-AAA-CA- -GG(AUUN-G AUAC)-CCU- ----GGUA-G UC----CAC- A-CG-GU--A 1621 AAC-G-AUGA A--UA-CU-- -------C|G -CU-GU-UUG -CG------- ---------- 1681 -(AUA-UN)C ---------- ---------- ---------- ---------A -GUAAG-CGG 1741 CC--AA---- --GC-(GAA- ---A)G-CG- UUAA-GUAUU C|C|A-CCU- G-GGGAGUAC 1801 GCC-G---(G CAA)---C-G GU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGAGG-AAC A-U-GU-GGU -UUNAUU-CG -(AUNAUA-C G)--CGAGGA 1921 A-CCUUA-CC CGG-GC-UUG AAU-UG|--- -------C-A ---ACCG--- -AA----UUA 1981 -CCU-U--(- GAAA-)-GGG -G-UAAG--- ---------- ---CC----- --(GC----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------A A-)------- GG-------- ---------| CGG-UU-GUG |---A|A--G 2161 GU-GC-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GC-C(-GUG A)-GGUGU-C 2221 GG-C-(UUAA -GU)-GCCAU AA-------- CGAG-C--GC AACCC-UU-A |-UC--GAC- 2281 AG--UUAC-C AU-CGG---- ---------- ---------- ---G(---UC ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CCG|G 2701 G-GA-CU-C- U-GUC-GA-G A-CU-G-CYG --UC(-G--U AA)-GAU-RC -GAGG-A-AG 2761 G-GG-GGG-A UG-ACG--UC -A-AAUC-AG CAC-G-GC-C CUUAC-G-UC -CG--GGGC- 2821 U-ACA-CA-C GUG--UUACA AUGGG-G-GG -UA--CAGCA AGC-C-G-C- CC-GGC-G(G 2881 -CGA)CGCC- ---------- CG-GCUAA-U CCUA--AAAA -CC-C-CUC- UCAGUUCGGA 2941 C-UGGAGUC- (UGCAAC-C- C)-GACUCCA -CGAAGC-UG -GAUU-CGC- -UAGUA-AUC 3001 GC-GCA-(UC -AGCCAC)-G GCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-AAG--- --CCA-UGAA A--GC-CGG- GG-GU-ACCU -GAA-G-UGC 3121 G-U------- -AA-CC---- ---------- ---------- -----(---- -GUAAA---- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGA------ G-CG-CC-CU A-GGGU-AAA ACC-GG-UG- AU........ 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Bac.eggert 4376 bp RNA RNA 02-JUL-1998 DEFINITION Bacteroides eggerthii. ACCESSION No information KEYWORDS No information. SOURCE Bacteroides eggerthii. ORGANISM Bacteroides eggerthii. REFERENCE 1 AUTHORS Paster,B.J., Dewhirst,F.E., Olsen,I. and Fraser,G.J. TITLE Phylogeny of Bacteroides, Prevotella, and Porphyromonas spp. and related bacteria JOURNAL J. Bacteriol. 176, 725-732 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: L16485 NCTC 11185 (T) = VPI T5-42B-1 = ATCC 27754 biol_source= human feces BASE COUNT 386 a 320 c 427 g 334 t 2909 others ORIGIN 1 .......... .......... .........U NUUACAAUGA AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAU -NAAC-GC-- UAGC-UAC-A -GGC-UU--A ACAC-AUGCA A-GUC-GAGG 121 G--GC-AG-C AU-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -GAUUGA-AG (--CU----- ---------- ---------- 241 --------UG -)CU-UCAAU C--------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- AUG|-GC--G ACCG-GCGC- 361 -A-CG-GG-U GAGU---AAC -AC-GUAUC- CAA--CCU-G C-CGAU---A -ACUC-G-GG 421 -GAU-AG-CC U--------- ------UU-- C(-GAAA-)G -AAAG-A--U UAAUACC-CG 481 AU-AGU---- ---------- -------A-U AG-U--U-UU ---UCC-(-- --------GC 541 AU-------- -)-GGU---U UC-AC----U AU--UAAA-- ---GA----- ---------- 601 --(------- ----AUU--- ---)------ ---------| -----U--C- G--GUU---- 661 ----AUCG-- AUG---G-|G GAUGC----- -GU|----UC C--AUUA-G- AUA-G---UU 721 GG-CG-GG-( GU-AAC-GG) -C-CCACC-A A|-GUC-AA- CGA------- -----UG-GA 781 U-AG-G-GG| -U-UCU--(G -AGA)-GGAA ----GG-U-- CCC-C|C-AC -AUUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AAA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 AGG-AAUAUU G-GUCAAU-- GG-AC-(GAG A)-GUC-UGA ACCA|-GCCA AGUA-GC-GU 961 G-A-AG-G-A U-GAC--U-G CC(C-UA-U- -G)GG-UUGU AAA--CUUC| UUUU-AU-AC 1021 --GG-GAA-- UA-AAGU-GG --AGU-A--( -----UGCA- ---------) --UA-CU-NC 1081 ---------- -------U-U U-GU-AUGU- A-CCG-U-AU G-AA--UAAG ---------G 1141 -AUCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUN-A) U-A-C-GGAG |-GAUC-C-- 1201 GAG-CGUUAU CC-GGAUUUA -UU-GGGU|U UAAA-GGGA- GCG-UAG-GC -G|-GG-UG- 1261 C-UU-AAG|U CAG---UUGU G-AAA-GU-U UG-CGG-C(- UC-A)A-CCG -UA-A-AAU- 1321 -UGCA-GUUG A-UCC-UGGG C-GCCUU-GA GUG-----CA G-NA-UAGGU AGG-C|GGAA 1381 UU-CGUGGU- GUA-GCG(-G UGAAA)-UGC -UU-AGAU-A UC-ACGAAG- AACU-CCGA- 1441 -U-U-GC(-G AA-G)GCAG- -CUUACUG-- ---------- ---------- ---------G 1501 ACU--GU-AA CUGACG-CUN AU-G------ -------CU- C-GAAA-GU- GU-GGG-UA- 1561 UC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- A-CA-GU--A 1621 AAC-G-AUGA A--UA-CU-- -------C|G -CU-GU-UUG -CG------- ---------- 1681 -(AUA-CA)C ---------- ---------- ---------- ---------A -GUAAG-CGG 1741 CC--AA---- --GC-(GAA- ---A)G-CA- UUAA-GUAUU C|C|A-CCU- G-GGGAGUAC 1801 GCC-G---(G CAA)---C-G GU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGAGG-AAC A-U-GU-GGU -UUAAUU-CG -(AUGAUA-C G)--CGAGGA 1921 A-CCUUA-CC CGG-GC-UUA AAU-UG|--- -------C-A ---GCGG--- -AA----UGU 1981 -AGU-G--(- GAAA-)-CAU -U-ACAG--- ---------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ---------| CCG-CU-GUG |---A|A--G 2161 GU-GC-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GC-C(-GUG A)-GGUGU-C 2221 GG-C-(UUAA -GU)-GCCAU AA-------- CGAG-C--GC AACCC-UU-A |-UC--UAU- 2281 AG--UUAC-U AU-CAG---- ---------- ---------- ---G(---UC ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CUG|A 2701 G-GA-CU-C- U-AUG-GA-G A-CU-G-CCG --UC(-G--U AA)-GAU-GU -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AG CAC-G-GC-C CUUAC-G-UC -CG--GGGC- 2821 U-ACA-CA-C GUG--UUACA AUGGG-G-GG -UA--CAGAA GGC-A-G-C- UA-CCU-G(G 2881 -CGA)CAGG- ---------- AU-GCUAA-U CCCG--AAAA -CC-U-CUC- UCAGUUCGGA 2941 U-UGGAGUC- (UGCAAC-C- C)-GACUCCA -UGAAGC-UG -GAUU-CGC- -UAGUA-AUC 3001 GC-GCA-(UC -AGCCAC)-G GCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-AAG--- --CCA-UGAA A--GC-CGG- GG-GU-ACCU -GAA-G-UAC 3121 G-U------- -AA-CC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGA------ G-CG-UC-CU A-GGGU-AAA ACU-GG-UG- AU........ 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS str.3_42 4376 bp RNA RNA 02-JUL-1998 DEFINITION str. PUS3.42. str. PUS3.42. ACCESSION No information KEYWORDS No information. SOURCE str. PUS3.42. str. PUS3.42. ORGANISM str. PUS3.42. REFERENCE 1 AUTHORS Dymock,D., Weightman,A.J., Scully,C. and Wade,W.G. TITLE Molecular analysis of microflora associated with dentoalveolar abscesses JOURNAL J. Clin. Microbiol. 34, 537-542 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: U43699|g1172143 isolate_name= PUS3.42 BASE COUNT 355 a 340 c 458 g 300 t 2923 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......GAU -GAAC-GC-- UAGC-UAU-A -GGC-UU--A ACAC-AUGCA A-GUC-GUGG 121 G--GC-AG-C GG-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -AUGCUU-AG (--CU----- ---------- ---------- 241 --------UG -)CU-AAGUA U--------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- CCG|-GC--G ACCG-GCGC- 361 -A-CG-GG-U GAGUU--AAC -GC-GUACC- GAA--CCU-G C-CCAU---C -ACAC-A-GG 421 -GAU-AG-GC U--------- ------UG-- C(-GAAA-)G -CAGA-A--U UAAUACC-UG 481 AU-GGU---- ---------- -------C-U CA-G--U-UG ---UAU-(-- --------GC 541 AU-------- -)-GUA---U GA-UU----G AG--UAAA-- ---GCC---- ---------- 601 --(------- ---UUCG--- ---)------ ---------| ----GG--C- G--GUG---- 661 ----AUGG-- AUG---G-|C GGUGC----- -GU|----CC C--AUUAAG- GAA-G---UU 721 GG-CG-GG-( GU-AAC-GG) -C-CCACC-A A|-UCC-UU- CGA------- -----UG-GG 781 U-AG-G-GG| -U-UCU--(G -AGA)-GGAA ----GG-U-- CCC-C|C-AC -AUUGG-A-A 841 (CUGA-GA-U ACG)--GUCC -AAA-A-CUC -(UACG)--G GAG-GC-AG- C-A---GUGA 901 GGA-AUGAUU G-GUCAAU-- GG-GC-(GAG A)-GCC-UGA ACCA|-GCCA AGUA-GC-GU 961 G-C-GG-G-A U-GAA--R-G CC(C-UU-G- -U)GG-UCGU AAA--CCGC| UUUU-AU-CA 1021 --GU-GAA-- UA-AAGU-GG -CACC-A--( -----CGUG- ---------) --UG-GUGUC 1081 ---------- -------A-U U-GC-AGGU- A-GCU-G-AA G-AA--AAAG ---------G 1141 -ACCGGCU-A AUUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAA |-GGUC-C-- 1201 GGG-CGUUAU CC-GGAAUUA -UU-GGGU|U UAAA-GGGA- GCG-CAG-GC -G|-GG-AG- 1261 U-GU-AAG|U CAG---CUGU U-AAA-UA-U CA-GGG-C(- CC-A)A-CUC -UG-U-UA-- 1321 -UGCA-GUUG A-AAC-UAUA U-UUCUU-GA GUA-----CG C-AC-AGGGA UGG-C|GGAA 1381 UU-CAGGGU- GUA-GCG(-G UGAAA)-UGC -UU-AGAU-A UC-CUGAAG- AACU-CCGA- 1441 -U-C-GC(-G AA-G)GCAG- -CCAUCCG-- ---------- ---------- ---------G 1501 AGC--GU-AA CUGACG-CUG AG-G------ -------CU- C-GAAG-GU- GC-GGG-UA- 1561 UC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CGC- A-CG-GU--A 1621 AAC-G-AUGA A--UA-CU-- -------C|G -CA-GUUCGG -CC------- ---------- 1681 -(GUU-UA)- ---------- ---------- ---------- ---------G -GUCGAGUUG 1741 UC--CA---- --GC-(GAA- ---A)G-CG- UUAA-GUAUU C|C|A-CCU- G-GGGAGUAC 1801 GCC-G---(G CAA)---C-G GU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGAGG-AAC A-U-GU-GGU -UUAAUU-CG -(AUGAUA-C G)--CGAGGA 1921 A-CCUUA-CC CGG-GC-UUG AAC-CA|--- -------A-G ---AGUG--- -AC----GAG 1981 -UGC-A--(- GAGA-)-UGC -G-CUUA--- U--------- ---UC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GA-------- ---------| CAC-UU-UUG |---G|A--G 2161 GU-GC-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GC-C(-GUG A)-AGUGU-C 2221 GG-C-(UUAA -GU)-GCCAU AA-------- CGAG-C--GC AACCC-UU-U |-UC--UAC- 2281 GA---UGC-C AU-CGG---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CUG|G 2701 G-AA-CC-C- C-GUG-GA-U A-CU-G-CCG --CC(-G--C AA)-GGC--- -GAGG-A-AG 2761 G-UG-GGN-A UG-ACG--UC -A-AAUC-AG CAC-G-GC-C CUUAC-G-UC -CG--GGGC- 2821 U-ACA-CA-C GUG--UUACA AUGGU-C-GG -AG--CAGCA GGA-A-G-C- UA-CCU-G(G 2881 -CGA)CAGG- ---------- AU-GCUGA-U CCCA--AAAC -CC-G-GCC- UCAGUUCGGA 2941 C-UGGAGUC- (UGCAAC-C- C)-GACUCCA -CGAAGC-CG -GAUU-CGC- -UAGUA-AUC 3001 GC-GCA-(UC -AGCCAU)-G GCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-AAG--- --CCA-UGAA A--GC-CGG- GG-GU-GCCU -GAA-A-GCC 3121 G-U------- -GA-CC---- ---------- ---------- -----(---- -GCGA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGG------ U-CG-GC-CU A-GGGU-AAA ACC-GG-UG- AUU-GGGG-C 3301 U......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS 2.7.1.1.4 4376 bp RNA RNA 09-JAN-1999 DEFINITION 2.7.1.1.4 PREVOTELLA_SUBGROUP. ACCESSION No information KEYWORDS No information. SOURCE 2.7.1.1.4 PREVOTELLA_SUBGROUP. ORGANISM 2.7.1.1.4 PREVOTELLA_SUBGROUP. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 0 a 0 c 0 g 0 t 4376 others ORIGIN 1 x~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~-- ------~~~~ 541 ~~~~~~---- -~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~---~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- 1681 -(~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- -------~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~----~~~ 1981 ~~~~-~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~--- --~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~------ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~---~~ ---~~~--~~ 2341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- 3181 ---------- ---------- ---------- ------~)~~ ~~~~~~~~~~ ~~~~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Prv.rumco2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Prevotella ruminicola str. 23T. ACCESSION No information KEYWORDS No information. SOURCE Prevotella ruminicola str. 23T. ORGANISM Prevotella ruminicola. REFERENCE 1 AUTHORS Avgustin,G., Wright,F. and Flint,H.J. TITLE Genetic diversity and phylogenetic relationships among strains of Prevotella (Bacteroides) ruminicola from the rumen JOURNAL Int. J. Syst. Bacteriol. 44, 246-255 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: S70835|g546812 isolate_name= 23T BASE COUNT 98 a 83 c 122 g 86 t 3987 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .......UG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAA |-GGUC-C-- 1201 AGG-CGUUAU CC-GGAUUUA -UU-GGGU|U UAAA-GGGA- GCG-CAG-GC -U|-GA-UG- 1261 A-UU-AAG|C GUG---ACGU G-AAA-UG-U AG-CCG-C(- UC-A)A-CGG -CU-G-AAC- 1321 -UGCG-UCGC G-AAC-UGGU U-AUCUU-GA GUG-----AG U-UC-GAUGU UGG-C|GGAA 1381 UU-CGUGGU- GUA-GCG(-G UGAAA)-UGC -UU-AGAU-A UC-ACGAAG- AACU-CCGA- 1441 -U-U-GC(-G AA-G)GCAG- -CCAACAA-- ---------- ---------- ---------G 1501 GCC--UU-UA CUGACG-CUA AA-G------ -------CU- C-GAAG-GU- GC-GGG-UA- 1561 UC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CGC- A-CG-GU--A 1621 AAC-G-AUGG A--UG-CC-- -------C|G -CU-GU-UUG -CG------- ---------- 1681 -(AUA-UA)C ---------- ---------- ---------- ---------U -GUGAG-CGG 1741 CC--AA---- --GA-(GAA- ---A)U-CG- UUAA-GCAUC C|C|A-CCU- G-GGGAGUAC 1801 GCC-G---(G CAA)---C-G GU-GA..... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Prv.rumco3 4376 bp RNA RNA 02-JUL-1998 DEFINITION Prevotella ruminicola str. TC18. ACCESSION No information KEYWORDS No information. SOURCE Prevotella ruminicola str. TC18. ORGANISM Prevotella ruminicola. REFERENCE 1 AUTHORS Avgustin,G., Wright,F. and Flint,H.J. TITLE Genetic diversity and phylogenetic relationships among strains of Prevotella (Bacteroides) ruminicola from the rumen JOURNAL Int. J. Syst. Bacteriol. 44, 246-255 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: S70836|g546813 isolate_name= TC18 BASE COUNT 98 a 83 c 122 g 86 t 3987 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .......UG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAA |-GGUC-C-- 1201 AGG-CGUUAU CC-GGAUUUA -UU-GGGU|U UAAA-GGGA- GCG-CAG-GC -U|-GA-UG- 1261 A-UU-AAG|C GUG---ACGU G-AAA-UG-U AG-CCG-C(- UC-A)A-CGG -CU-G-AAC- 1321 -UGCG-UCGC G-AAC-UGGU U-AUCUU-GA GUG-----AG U-UC-GAUGU UGG-C|GGAA 1381 UU-CGUGGU- GUA-GCG(-G UGAAA)-UGC -UU-AGAU-A UC-ACGAAG- AACU-CCGA- 1441 -U-U-GC(-G AA-G)GCAG- -CCAACAA-- ---------- ---------- ---------G 1501 GCC--UU-UA CUGACG-CUA AA-G------ -------CU- C-GAAG-GU- GC-GGG-UA- 1561 UC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CGC- A-CG-GU--A 1621 AAC-G-AUGG A--UG-CC-- -------C|G -CU-GU-UUG -CG------- ---------- 1681 -(AUA-UA)C ---------- ---------- ---------- ---------U -GUGAG-CGG 1741 CC--AA---- --GA-(GAA- ---A)U-CG- UUAA-GCAUC C|C|A-CCU- G-GGGAGUAC 1801 GCC-G---(G CAA)---C-G GU-GA..... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Prv.rumcol 4376 bp RNA RNA 02-JUL-1998 DEFINITION Prevotella ruminicola subsp. ruminicola ATCC 19189 (T). ACCESSION No information KEYWORDS No information. SOURCE Prevotella ruminicola subsp. ruminicola ATCC 19189 (T). ORGANISM Prevotella ruminicola. REFERENCE 1 AUTHORS Paster,B.J., Dewhirst,F.E., Olsen,I. and Fraser,G.J. TITLE Phylogeny of Bacteroides, Prevotella, and Porphyromonas spp. and related bacteria JOURNAL J. Bacteriol. 176, 725-732 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: L16482 biol_source= bovine rumen BASE COUNT 360 a 325 c 442 g 317 t 2932 others ORIGIN 1 .......... .......... .......... ..UNCAAUGA AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAU -NAAC-GC-- UAGC-UNC-A -GGC-UU--A ACAC-AUGCA A-GUC-GAGG 121 G--GC-AG-C AU-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -AAUCGA-AG (--CU----- ---------- ---------- 241 --------UG -)CU-UUGAU U--------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- AUG|-GC--G ACCG-GCGC- 361 -A-CG-GG-U GAGU---AAC -GC-GUAUC- CAA--CCU-U C-CCUA---U -AGUA-G-AG 421 -AAU-AG-CC C--------- ------GG-- C(-GAAA-)G -UCGG-A--U UAAUGCU-CU 481 AU-GUU---- ---------- -------G-U AU-U--U-AG ---AGG-(-- --------AC 541 AU-------- -)-CUN---A AG-AA----U AC--CAAA-- ---GG----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----C--C- G--CUA---- 661 ----UAGG-- AUG---G-|G GAUGC----- -GU|----CU G--AUUA-G- GUA-G---UA 721 GG-CG-GG-( GU-AAC-GG) -C-CCACC-U A|-GCC-GA- CGA------- -----UC-AG 781 U-AG-G-GG| -U-UCU--(G -AGA)-GGAA ----GG-U-- CCC-C|C-AC -AUUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AAA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 AGG-AAUAUU G-GUCAAU-- GG-AC-(GGA A)-GUC-UGA ACCA|-GCCA AGUA-GC-GU 961 G-C-AG-G-A U-GAC--G-G CC(C-UN-U- -G)GG-UUGU AAA--CUNC| UUUU-AU-AU 1021 --AG-GGA-- UA-AAGU-CG --GGG-A--( -----CGUG- ---------) --UC-CC-NG 1081 ---------- -------U-U U-GU-AGGU- A-CUA-U-AU G-AA--UAAG ---------G 1141 -ACCGGCU-A AUUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAA |-GGUC-N-- 1201 NGG-CGUUAU CC-GGAUUUA -UU-GGGU|U UAAA-GGGA- GCG-CAG-GC -U|-GA-UG- 1261 A-UU-AAG|C GUG---ACGU G-AAA-UG-U AG-CCG-C(- UN-A)A-CGG -CN-N-AAC- 1321 -UGCG-UCGC G-AAC-UGGU U-AUCUU-GA GUG-----AG U-UC-GAUGU UGG-C|GGAA 1381 UU-CGUGGU- GUA-GCG(-G UGAAA)-UGC -UU-AGAU-A UC-ACGAAG- AACU-CCGA- 1441 -U-U-GC(-G AA-G)GCAG- -CCAACAA-- ---------- ---------- ---------G 1501 GCC--UN-UA CUGACG-CUA AA-G------ -------CU- C-GAAG-GU- GC-GGG-UA- 1561 UC-GAA-CA- -GG(AUUN-G AUAC)-CCU- ----GGUA-G UC----CGC- A-CG-GU--N 1621 AAC-G-AUGG A--UG-CC-- -------C|G -CU-NU-UUG -CG------- ---------- 1681 -(AUA-UA)C ---------- ---------- ---------- ---------U -GUGAG-CGG 1741 CC--AA---- --GA-(GAA- ---A)U-CG- UUAA-GCAUC C|C|A-CCU- G-GGGAGUAC 1801 GCC-G---(G CAA)---C-G GU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGAGG-AAC A-U-GU-GGU -UUAAUU-CG -(AUGAUA-C G)--CGAGGA 1921 A-CCUUA-CC CGG-GC-UUG AAC-UG|--- -------C-C ---AGCG--- -AA----CGA 1981 -UUC-A--(- GAGA-)-UGA -U-GAGG--- U--------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- -----A---| CGC-UG-GUG |---G|A--G 2161 GU-GC-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GC-C(-GUG A)-GGUGU-C 2221 GG-C-(UUNA -GU)-GCCAU AA-------- CGAG-C--GC AACCC-UN-U |-UC--UUU- 2281 AG--UUGC-C AU-CAG---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CUG|G 2701 G-CA-CU-C- U-GGA-GA-U A-CU-G-CCA --CC(-G--U AA)-GGU-GU -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AG CAC-G-GC-C CUUAC-G-UC -CG--GGGC- 2821 U-ACA-CA-C GUG--UUACA AUGGG-G-GG -UA--CAGAG AGU-C-G-G- AK-MWW-S(G 2881 -CAA)KWWK- ---------- SW-UCUAA-U CCUU--AAAG -CC-U-UCC- UCAGUUCGGA 2941 U-UGGGGUC- (UGCAAC-C- C)-GACCCCA -UGAAGC-UG -GAUU-CGC- -UAGUA-AUC 3001 GC-GCA-(UC -AGCCAU)-G GCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-AAG--- --CCA-UGAA A--GC-CGG- GG-GC-GCUU -GAA-G-UCC 3121 G-U------- -GA-CC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGA------ U-CG-GC-CU A-GAGC-GAA ACU-GG-UA- AU........ 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Prv.rumco4 4376 bp RNA RNA 02-JUL-1998 DEFINITION Prevotella ruminicola str. TC2-24. ACCESSION No information KEYWORDS No information. SOURCE Prevotella ruminicola str. TC2-24. ORGANISM Prevotella ruminicola. REFERENCE 1 AUTHORS Avgustin,G., Wright,F. and Flint,H.J. TITLE Genetic diversity and phylogenetic relationships among strains of Prevotella (Bacteroides) ruminicola from the rumen JOURNAL Int. J. Syst. Bacteriol. 44, 246-255 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: S70882|g546814 isolate_name= TC2-24 BASE COUNT 94 a 88 c 127 g 79 t 3988 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .......UG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAA |-GGUC-C-- 1201 GGG-CGUUAU CC-GGAUUUA -UU-GGGU|U UAAA-GGGA- GCG-CAG-GC -G|-GG-GA- 1261 G-GU-AAG|C GUG---ACGU G-AAA-UG-U AG-CCG-C(- UC-A)A-CGG -CU-G-AAC- 1321 -UGCG-UCGC G-AAC-UGNC U-CUCUU-GA GUG-----AG U-AC-GACGU CAG-C|GGAA 1381 UU-UGUGGU- GUA-GCG(-G UGAAA)-UGC -UU-AGAU-A UC-ACGAAG- AACC-CCGA- 1441 -U-U-GC(-G AA-G)GCAG- -CUGACGA-- ---------- ---------- ---------G 1501 UCC--UU-UA CUGACG-CUA AA-G------ -------CU- C-GAAG-GU- GC-GGG-UA- 1561 UC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CGC- A-CG-GU--A 1621 AAC-G-AUGG A--UG-CC-- -------C|G -CU-GU-UGG -CG------- ---------- 1681 -(AUA-UA)C ---------- ---------- ---------- ---------U -GUCAG-CGG 1741 CC--AA---- --GC-(GAA- ---A)G-CG- UUAA-GCAUC C|C|A-CCU- G-GGGAGUAC 1801 GCC-G---(G CAA)---C-G GU-GA..... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Prv.rumco5 4376 bp RNA RNA 02-JUL-1998 DEFINITION Prevotella ruminicola str. GA33. ACCESSION No information KEYWORDS No information. SOURCE Prevotella ruminicola str. GA33. ORGANISM Prevotella ruminicola. REFERENCE 1 AUTHORS Avgustin,G., Wright,F. and Flint,H.J. TITLE Genetic diversity and phylogenetic relationships among strains of Prevotella (Bacteroides) ruminicola from the rumen JOURNAL Int. J. Syst. Bacteriol. 44, 246-255 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: S70837|g546815 isolate_name= GA33 BASE COUNT 95 a 87 c 127 g 80 t 3987 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .......UG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAA |-GGUC-C-- 1201 AGG-CGUUAU CC-GGAUUUA -UU-GGGU|U UAAA-GGGA- GCG-CAG-GC -U|-GG-AG- 1261 A-UU-AAG|C GUG---ACGU G-AAA-UG-C CG-CGG-C(- UC-A)A-CCG -UG-G-AAG- 1321 -UGCG-UCGC G-AAC-UGGU U-UCCUU-GA GUG-----UA U-UC-GACGU CAG-C|GGAA 1381 UU-CGUGGU- GUA-GCG(-G UGAAA)-UGC -UU-AGAU-A UC-ACGAAG- AACU-CCGA- 1441 -U-U-GC(-G AA-G)GCAG- -CUGGCGA-- ---------- ---------- ---------G 1501 GCU--AC-AA CUGACG-CUA AA-G------ -------CU- C-GAAG-GU- GC-GGG-UA- 1561 UC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CGC- A-CG-GU--A 1621 AAC-G-AUGG A--UG-CC-- -------C|G -CU-GU-UGG -CG------- ---------- 1681 -(AUA-UA)C ---------- ---------- ---------- ---------U -GUCAG-CGG 1741 CC--AA---- --GC-(GAA- ---A)G-CG- UUAA-GCAUC C|C|A-CCU- G-GGGAGUAC 1801 GCC-G---(G CAA)---C-G GU-GA..... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Prv.bucca2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Prevotella buccae str. 938.11 ATCC 33690. ACCESSION No information KEYWORDS No information. SOURCE Prevotella buccae str. 938.11 ATCC 33690. ORGANISM Prevotella buccae. REFERENCE 1 AUTHORS Paster,B.J., Dewhirst,F.E., Olsen,I. and Fraser,G.J. TITLE Phylogeny of Bacteroides, Prevotella, and Porphyromonas spp. and related bacteria JOURNAL J. Bacteriol. 176, 725-732 (1994) STANDARD No information COMMENTS Organism information Culture collection: ATCC 33690 Sequence information (bases 1 to 4376) Corresponding GenBank entry: L16478 biol_source= human periodontal pocket isolate_name= 938.11 BASE COUNT 327 a 391 c 478 g 271 t 2909 others ORIGIN 1 .......... .......... .......... ..UNCNAUGG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAU -NAAC-GC-- UGGC-UAC-A -GGC-UU--A ACAC-AUGCA A-GUC-GAGG 121 G--GC-AG-C AU-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -GCCGGU-UG (--CU----- ---------- ---------- 241 --------UG -)CA-ACCGG U--------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- AUG|-GC--G ACCG-GCGC- 361 -A-CG-GG-U GAGU---AAC -GC-GUAUC- CAA--CCU-U C-CCGC---G -ACCA-A-GG 421 -GAU-AA-CC U--------- ------GC-- C(-GAAA-)G -GCAG-A--C UAAUACC-UU 481 AU-GUC---- ---------- -------C-U CC-U--U-UG ---AAG-(-- --------GC 541 AU-------- -)-CUG---A CG-AG----G AG--CAAA-- ---GA----- ---------- 601 --(------- ---UCCG--- ---)------ ---------| -----U--C- G--GUC---- 661 ----ACGG-- AUG---G-|G GAUGC----- -GU|----CC G--AUUA-G- CUU-G---UU 721 GG-CG-GG-( GC-AAC-GG) -C-CCACC-A A|-GGC-UU- CGA------- -----UC-GG 781 U-AG-G-GG| -U-UCU--(G -AGA)-GGAA ----GG-C-- CCC-C|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 AGG-AAUAUU G-GUCAAU-- GG-GC-(GGA A)-GCC-UGA ACCA|-GCCA AGUA-GC-GU 961 G-C-AG-G-A U-GAC--G-G CC(C-UA-C- -G)GG-UUGU AAA--CUGC| UUUU-AU-GC 1021 --GG-GGA-- UA-AAGU-UG --CCC-A--( -----CGNG- ---------) --UG-GG-UN 1081 ---------- -------U-U U-GC-AGGU- A-CCG-C-AU G-AA--UAAG ---------G 1141 -ACCGGCU-A AUUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAA |-GGUC-C-- 1201 AGG-CGUUAU CC-GGAUUUA -UU-GGGU|U UAAA-GGGA- GCG-CAG-GC -C|-GC-CG- 1261 U-GC-AAG|C GUG---CCGU G-AAA-AG-C AG-CGG-C(- CC-A)A-CCG -CU-G-CCC- 1321 -UGCG-GCGC G-AAC-UGCU U-GGCUU-GA GUG-----CG C-CG-GAAGC GGG-C|GGAA 1381 UU-CGUGGU- GUA-GCG(-G UGAAA)-UGC -UU-AGAU-A UC-ACGAAG- AACC-CCGA- 1441 -U-U-GC(-G AA-G)GCAG- -CCCGCUG-- ---------- ---------- ---------U 1501 GGC--GC-CA CUGACG-CUG AG-G------ -------CU- C-GAAG-GU- GC-GGG-UA- 1561 UC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CGC- A-CG-GU--N 1621 AAC-G-AUGG A--UA-CC-- -------C|G -CU-GU-CCG -GC------- -C-------- 1681 -(CGU-AC)G ---------- ---------- ---------- --------GU -CUGGG-CGG 1741 CC--AA---- --GC-(GAA- ---A)G-CG- UUAA-GUAUC C|C|A-CCU- G-GGGAGUAC 1801 GCC-G---(G CAA)---C-G GU-GAAACUC -AAA-GGNAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGAGG-AAC A-U-GU-GGU -UUAAUU-CG -(AUGAUA-C G)--CGAGGA 1921 A-CCUUA-CC CGG-GC-UUG AAU-UG|--- -------C-A ---GGAG--- -AA----UGA 1981 -UUC-A--(- GAGA-)-UGA -U-GAAG--- U--------- ---CC----- --(CU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- -----A---| CUC-CU-GUG |---A|A--G 2161 GU-GC-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GC-C(-GUG A)-GGUGU-C 2221 GG-C-(UUAA -GU)-GCCAU AA-------- CGAG-C--GC AACCC-CU-C |-UC--CGC- 2281 AG--UUGC-C AU-CGG---- ---------- ---------- ---G(---UC ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CCG|G 2701 G-CA-CU-C- U-GCG-GA-C A-CU-G-CCG --CC(-G--C AA)-GGU-GC -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AG CAC-G-GC-C CUUAC-G-UC -CG--GGGC- 2821 C-ACA-CA-C GUG--UUACA AUGGC-C-GG -CA--CAGAG GGC-U-G-U- CC-GCA-U(G 2881 -CAA)GUGC- ---------- GR-GCGAA-U CCCC--AAAU -CC-G-GUC- CCAGUUCGGA 2941 C-UGGGGUC- (UGCAAC-C- C)-GACCCCA -CGAAGC-UG -GAUU-CGC- -UAGUA-AUC 3001 GC-GCA-(UC -AGCCAU)-G GCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-AAG--- --CCA-UGAA A--GC-CGG- GG-GU-GCCU -GAA-G-UCC 3121 G-U------- -GA-CC---- ---------- ---------- -----(---- -GCGA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGG------ U-CG-GC-CU A-GGGC-AAA ACC-GG-UG- AU........ 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Prv.buccae 4376 bp RNA RNA 02-JUL-1998 DEFINITION Prevotella buccae str. VPI D3A-6 ATCC 33574 (T). ACCESSION No information KEYWORDS No information. SOURCE Prevotella buccae str. VPI D3A-6 ATCC 33574 (T). ORGANISM Prevotella buccae. REFERENCE 1 AUTHORS Paster,B.J., Dewhirst,F.E., Olsen,I. and Fraser,G.J. TITLE Phylogeny of Bacteroides, Prevotella, and Porphyromonas spp. and related bacteria JOURNAL J. Bacteriol. 176, 725-732 (1994) STANDARD No information COMMENTS Organism information Culture collection: ATCC 33574 (T), VPI D3A-6 ATCC 33574 (T) Sequence information (bases 1 to 4376) Corresponding GenBank entry: L16477 biol_source= gingival crevice isolate_name= VPI D3A-6 BASE COUNT 326 a 388 c 477 g 270 t 2915 others ORIGIN 1 .......... .......... .......... ....CAAUGG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAU -NAAC-GC-- UGGC-UAC-A -GGC-UU--A ACAC-AUGCA A-GUC-GAGG 121 G--GC-AG-C AU-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -GCCGGU-UG (--CU----- ---------- ---------- 241 --------UG -)CA-ACCGG U--------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- AUG|-GC--G ACCG-GCGC- 361 -A-CG-GG-U GAGU---AAC -GC-GUAUC- CAA--CCU-U C-CCGC---G -ACCA-A-GG 421 -GAU-AA-CC U--------- ------GC-- C(-GAAA-)G -GCAG-A--C UAAUACC-UU 481 AU-GUC---- ---------- -------C-U CC-U--U-UG ---AAG-(-- --------GC 541 AU-------- -)-CUG---A CG-AG----G AG--CAAA-- ---GA----- ---------- 601 --(------- ---UCCG--- ---)------ ---------| -----U--C- G--GUC---- 661 ----ACGG-- AUG---G-|G GAUGC----- -GU|----CC G--AUUA-G- CUU-G---UU 721 GG-CG-GG-( GC-AAC-GG) -C-CCACC-A A|-GGC-UU- CGA------- -----UC-GG 781 U-AG-G-GG| -U-UCU--(G -AGA)-GGAA ----GG-C-- CCC-C|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -NGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 AGG-AAUAUU G-GUCAAU-- GG-GC-(GGA A)-GCC-UGA ACCA|-GCCA AGUA-GC-GU 961 G-C-AG-G-A U-GAC--G-G CC(C-UA-N- -G)GG-UUGU AAA--CUNC| UUUU-AU-GC 1021 --GG-GGA-- UA-AAGU-UG --CCC-A--( -----CGUG- ---------) --UG-GG-NN 1081 ---------- -------U-U U-GC-AGGU- A-CCG-C-AU G-AA--UAAG ---------G 1141 -ACCGGCU-A AUUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAA |-GGUC-C-- 1201 NGG-CGUUAU CC-GGAUUUA -UU-GGGU|U UAAA-GGGA- GCG-CAG-GC -C|-GC-CG- 1261 U-GC-AAG|C GUG---CCGU G-AAA-AG-C AG-CGG-C(- CC-A)A-CCG -CU-G-CCC- 1321 -UGCG-GCGC G-AAC-UGCU U-GGCUU-GA GUG-----CG C-CG-GAAGC GGG-C|GGAA 1381 UU-CGUGGU- GUA-GCG(-G UGAAA)-UGC -UU-AGAU-A UC-ACGAAG- AACC-CCGA- 1441 -U-U-GC(-G AA-G)GCAG- -CCCGCUG-- ---------- ---------- ---------U 1501 GGC--GC-NA CUGACG-CUG AG-G------ -------CU- C-GAAG-GU- GC-GGG-UA- 1561 UC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CGC- A-CG-GU--N 1621 AAC-G-AUGG A--UA-CC-- -------C|G -CU-GU-CCG -GC------- -C-------- 1681 -(CGU-AC)G ---------- ---------- ---------- --------GU -CUGGG-CGG 1741 CC--AA---- --GC-(GAA- ---A)G-CG- UUAA-GUAUC C|C|A-CCU- G-GGGAGUAC 1801 GCC-G---(G CAA)---C-G GU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGAGG-AAC A-U-GU-GGU -UUAAUU-CG -(AUGAUA-C G)--CGAGGA 1921 A-CCUUA-CC CGG-GC-UUG AAU-UG|--- -------C-A ---GGAG--- -AA----UGA 1981 -UUC-A--(- GAGA-)-UGA -U-GAAG--- U--------- ---CC----- --(CU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- -----A---| CUC-CU-GUG |---A|A--G 2161 GU-GC-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GC-C(-GUG A)-GGUGU-C 2221 GG-C-(UUAA -GU)-GCCAU AA-------- CGAG-C--GC AACCC-CU-C |-UC--CGC- 2281 AG--UUGC-C AU-CGG---- ---------- ---------- ---G(---UC ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CCG|G 2701 G-CA-CU-C- U-GCG-GN-C A-CU-G-CCG --CC(-G--C AA)-GGU-GC -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AG CAC-G-GC-C CUUAC-G-UC -CG--GGGC- 2821 C-ACA-CA-C GUG--UUACA AUGGC-C-GG -CA--CAGAG GGC-U-G-U- CC-GCA-U(G 2881 -CAA)GUGC- ---------- GR-GCGAA-U CCCC--AAAU -CC-G-GUC- CCAGUUCGGA 2941 C-UGGGGUC- (UGCAAC-C- C)-GACCCCA -CGAAGC-UG -GAUU-CGC- -UAGUA-AUC 3001 GC-GCA-(UC -AGCCAU)-G GCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-AAG--- --NCA-UGAA A--GC-CGG- GG-GU-GCCU -GAA-G-UCC 3121 G-U------- -GA-CC---- ---------- ---------- -----(---- -GCGA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGG------ U-CG-GC-CU A-GGGC-AAA ACC-GG-UG- AU........ 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Prv.dental 4376 bp RNA RNA 02-JUL-1998 DEFINITION Prevotella dentalis str. ES2645 DSM 3688 (T). ACCESSION No information KEYWORDS No information. SOURCE Prevotella dentalis str. ES2645 DSM 3688 (T). ORGANISM Prevotella dentalis. REFERENCE 1 AUTHORS Willems,A. and Collins,M.D. TITLE 16S rRNA gene similarities indicate that Hallella seregens (Moore and Moore) and Mitsuokella dentalis (Haapsalo et al.) are genealogically highly related and are members of the genus Prevotella: emended description of the genus Prevotella (Shah and Collins) and description of Prevotella dentalis comb. nov. JOURNAL Int. J. Syst. Bacteriol. 45 (4), 832-836 (1995) STANDARD No information COMMENTS Organism information Culture collection: DSM 3688 (T) Sequence information (bases 1 to 4376) Corresponding GenBank entry: X81876|g1565276 Former RDP Sids: Prv.denti3 DSM 3688 (T) = ATCC 49559 isolate_name= ES2645 NB: Added by Bergey's to RDP Release 6.0 tree BASE COUNT 339 a 371 c 477 g 293 t 2896 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .........U -GAAC-GC-- UGNC-UAC-A -GGC-UU--A ACAC-AUGCA A-GUC-GAGG 121 G--GC-AG-C AU-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -GGCGGA-UG (--CU----- ---------- ---------- 241 --------UG -)CA-UCUGC C--------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- AUG|-GC--G ACCG-GCGC- 361 -A-CG-GG-U GAGU---AAC -GC-GUAUC- CAA--CCU-A C-CUUC---A -AGCA-G-GG 421 -GAC-AA-UC C--------- ------GU-- A(-GAAA-)U -GCGG-U--C UGAUACC-CU 481 AU-GUA---- ---------- -------U-U CC-A--A-CG ---AGG-(-- --------UC 541 CU-------- -)-CCG---U GU-UG----G AA--GAAA-- ---GG----- ---------- 601 --(------- ---UUUAU-- ---)------ ---------| -----C--C- G--CUU---- 661 ----GUUG-- AUG---G-|G GAUGC----- -GU|----CC G--AUUA-G- CUU-G---UU 721 GG-CG-GG-( GC-AAC-GG) -C-CCACC-A A|-GGC-AA- CGA------- -----UC-GG 781 U-AG-G-GG| -U-UCU--(G -AGA)-GGAA ----GG-U-- CCC-C|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 AGG-AAUAUU G-GUCAAU-- GG-GC-(GUA A)-GCC-UGA ACCA|-GCCA AGUA-GC-GU 961 G-C-AG-G-A U-GAC--G-G CC(C-UA-U- -G)GG-UUGU AAA--CUGC| UUUU-AU-AC 1021 --GG-GGA-- UA-AAGU-GC --GCC-A--( -----CGUG- ---------) --UG-GU-GU 1081 ---------- -------U-U U-GC-AGGU- A-CCG-U-AU G-AA--UAAG ---------G 1141 -ACCGGCU-A AUUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAA |-GGUC-C-- 1201 GGG-CGUUAU CC-GGAUUUA -UU-GGGU|U UAAA-GGGA- GCG-UAG-GC -C|-GC-AU- 1261 G-UC-AAG|C GUG---UUGU G-AAA-UG-C AG-GUG-C(- UC-A)A-CAC -CU-G-GAU- 1321 -UGCA-GCGC G-AAC-UGUC G-UGCUU-GA GUG-----UG C-GC-AACGU UGG-C|GGAA 1381 UU-CGUCGU- GUA-GCG(-G UGAAA)-UGC -UU-AGAU-A UG-ACGAGG- AACC-CCGA- 1441 -U-U-GC(-G AA-G)GCAG- -CUGACGG-- ---------- ---------- ---------G 1501 AGC--AU-AA CUGACG-CUG AA-G------ -------CU- C-GAAG-GU- GC-GGG-UA- 1561 UC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CGC- A-CG-GU--A 1621 AAC-G-AUGG A--UG-CC-- -------C|G -CC-GU-CCG -CC-C----- -U-------- 1681 -(UUU-AU)U ---------- ---------- ---------- --------GG -GCGUG-UGG 1741 CC--AA---- --GC-(GAA- ---A)G-CA- UUAA-GCAUC C|C|A-CCU- G-GGGAGUAC 1801 GCC-G---(G CAA)---C-G GU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGAGG-AAC A-U-GU-GGU -UUAAUU-CG -(AUGAUA-C G)--CGAGGA 1921 A-CCUUA-CC CGG-GC-UUG AAU-UG|--- -------C-A ---GAGG--- -AA----CGA 1981 -UCC-A--(- GAGA-)-UGG -U-GAGG--- C--------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- -----G---| CUU-CU-GCG |---A|A--G 2161 GU-GC-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GC-C(-GUG A)-GGUGU-C 2221 GG-C-(UCAA -GU)-GCCAU AA-------- CGAG-C--GC AACCC-CU-C |-UC--CGC- 2281 AG--UUGC-C AU-CGG---- ---------- ---------- ---G(---UC ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CCG|G 2701 G-CA-CU-C- U-GUG-GA-C A-CU-G-CCG --CC(-G--C AA)-GGU-GU -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AG CAC-G-GC-C CUUAC-G-UC -CG--GGGC- 2821 U-ACA-CA-C GUG--UUACA AUGGG-G-GG -CA--CAGCA AGC-C-G-G- CC-GCG-U(G 2881 -CAA)ACGC- ---------- GG-UCCAA-U CCUG--AAAU -CC-C-CCC- UCAGUUCGGA 2941 C-UGGGGUC- (UGCAAC-C- C)-GACCCCA -CGAAGC-UG -GAUU-CGC- -UAGUA-AUC 3001 GC-GCA-(UC -AGCCAU)-G GCG-CGGUG- AAUAC-GUN- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-AAG--- --CCA-UGAA A--GC-CGG- GG-GU-GCCU -GAA-G-UCC 3121 G-U------- -GA-CC---- ---------- ---------- -----(---- -GGAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGA------ U-CG-GC-CU A-GGGC-AAA ACU-GG-UG- AUU-GGGG-C 3301 U---AAGUC- GUAA-CAAGG UAGCC-GUAC C(GGA-G).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Prv.loesch 4376 bp RNA RNA 02-JUL-1998 DEFINITION Prevotella loescheii. ACCESSION No information KEYWORDS No information. SOURCE Prevotella loescheii. ORGANISM Prevotella loescheii. REFERENCE 1 AUTHORS Paster,B.J., Dewhirst,F.E., Olsen,I. and Fraser,G.J. TITLE Phylogeny of Bacteroides, Prevotella, and Porphyromonas spp. and related bacteria JOURNAL J. Bacteriol. 176, 725-732 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: L16481 biol_source= gingival crevice BASE COUNT 331 a 359 c 475 g 292 t 2919 others ORIGIN 1 .......... .......... .......... ..UACAAUGG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAU -NAAC-GC-- UAGC-UAC-A -GGC-UU--A ACAC-AUGCA A-GUC-GCGG 121 G--GC-AG-C AU-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -GGGGGU-UG (--CU----- ---------- ---------- 241 --------UG -)CA-AUCCC C--------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- AUG|-GC--G ACCG-GCGC- 361 -A-CG-GG-U GAGU---AAC -GC-GUAUC- CAA--CCU-G C-CCUU---C -ACCA-C-GG 421 -GAU-AA-CC C--------- ------GG-- C(-GAAA-)G -UCGG-A--C UAAUACC-GU 481 AU-GUU---- ---------- -------G-U CC-A--U-UG ---ACG-(-- --------GC 541 AU-------- -)-CCG---A UU-UG----G AC--GAAA-- ---GG----- ---------- 601 --(------- ---UUUR--- ---)------ ---------| -----U--C- G--GUG---- 661 ----AAGG-- AUG---G-|G GAUGC----- -GU|----CY G--AUUA-G- CUA-G---AY 721 GG-CG-GG-( GU-AAC-GG) -C-CCACC-G U|-GGC-UN- CGA------- -----UC-GG 781 U-AG-G-GG| -U-UCU--(G -AGA)-GGAA ----GG-U-- CCC-C|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 AGG-AAUAUU G-GUCAAU-- GG-GC-(GUA A)-GCC-UNA ACCA|-GCCA AGUA-GC-GU 961 G-C-AG-G-A U-GAC--G-G CC(C-UA-U- -G)GG-UUGU AAA--CUNC| UUUU-AU-GC 1021 --GG-GGA-- UA-AAGU-AA --CNC-A--( -----CGUG- ---------) --UG-CGUNN 1081 ---------- -------U-U U-GC-AGGU- A-CCG-C-AU G-AA--UAAG ---------G 1141 -ACCGGCU-A AUUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAA |-GGUC-C-- 1201 AGG-CGUUAU CC-GGAUUUA -UU-GGGU|U UAAA-GGGA- GCG-UAG-GC -C|-GC-GC- 1261 C-UU-AAG|C GUG---UUGU G-AAA-UC-C RG-GUG-C(- UC-A)A-CAU -CY-G-GNU- 1321 -UGCA-GCGC G-AAC-UGGG G-CGCUU-GA GUG-----CG C-UC-AAAGU AGG-C|GGAA 1381 UU-CGUGGU- GUA-GCG(-G UGAAA)-UGC -UU-AGAU-A UC-ACGAGG- AACU-CCGA- 1441 -U-U-GC(-G AA-G)GCAG- -CCUACUG-- ---------- ---------- ---------U 1501 AGC--GC-UA CUGACG-CUG AU-G------ -------CU- C-GAAA-GC- GU-GGG-UA- 1561 UC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CG-GU--A 1621 AAC-G-AUGG A--UG-CU-- -------C|G -UU-GU-CGG -CG------- -C-------- 1681 -(CCU-UG)G ---------- ---------- ---------- ---------C -GUCGG-UGA 1741 CC--AA---- --GC-(GAA- ---A)G-CA- UUAA-GCAUC C|N|A-CCU- G-GGGAGUAC 1801 GCC-G---(G CAA)---C-G GU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGAGG-AAC A-U-GU-GGU -UUAAUU-CG -(AUGNUA-C G)--CGAGGA 1921 A-CCUUA-CC CGG-GC-UUG AAC-UG|--- -------C-G ---GCGG--- -AA----CGA 1981 -UUC-G--(- GAGA-)-YGA -U-GAGG--- G--------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- -----G---| CNG-CY-GYG |---G|A--G 2161 GU-GC-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GC-C(-GUG A)-GGUGU-C 2221 GG-C-(UUAA -GU)-GCCAU AA-------- CGAG-C--GC AACCC-CY-G |-UC--UUC- 2281 AG--UUGC-C AU-CGG---- ---------- ---------- ---G(---UU ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CCG|G 2701 G-CA-CU-C- U-GGA-GA-U A-CU-G-CCA --CC(-G--C AA)-GGU-GC -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AG CAC-G-GC-C CUUAC-G-UC -CG--GGGC- 2821 U-ACA-CA-C GUG--UUACA AUGGC-G-CA -UA--CAGAG AGU-C-G-G- UG-GCA-U(G 2881 -CGA)AUGC- ---------- CA-UCCAA-U CCUC--AAAG -UG-C-GUC- UCAGUUCGGA 2941 C-UGGGGUC- (UGCAAC-C- C)-GACCCCA -CGAAGC-UG -GAUU-CGC- -UAGUA-AUC 3001 GC-GCA-(UC -AGCCAU)-G GCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-AAG--- --CCA-UGAA A--GC-CGG- GG-GY-GCCU -GAA-G-UCC 3121 G-U------- -GA-CC---- ---------- ---------- -----(---- -GCGA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGG------ U-CG-GC-CU A-GGGY-RAA ACC-GG-UG- AUU-GGGG.. 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Prv.oralis 4376 bp RNA RNA 02-JUL-1998 DEFINITION Prevotella oralis. ACCESSION No information KEYWORDS No information. SOURCE Prevotella oralis. ORGANISM Prevotella oralis. REFERENCE 1 AUTHORS Paster,B.J., Dewhirst,F.E., Olsen,I. and Fraser,G.J. TITLE Phylogeny of Bacteroides, Prevotella, and Porphyromonas spp. and related bacteria JOURNAL J. Bacteriol. 176, 725-732 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: L16480 biol_source= human periodontal pocket BASE COUNT 339 a 351 c 456 g 319 t 2911 others ORIGIN 1 .......... .......... .......... ....CAAUGG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAU -NAAC-GC-- UAGC-UAC-A -GGC-UU--A ACAC-AUGCA A-GUC-GCGG 121 G--GC-AU-C AU-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -GGAGGU-UG (--UU----- ---------- ---------- 241 --------UU -)CA-ACUUU U--------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- AUG|-GC--G ACCG-GCGC- 361 -A-CG-GG-U GAGU---AAC -GC-GUAUC- CAA--CCU-U C-CCAU---U -ACUA-C-GG 421 -CAU-AC-CC C--------- ------GU-- U(-GAAA-)G -GCGG-C--C UNAUUCC-GU 481 AU-GCA---- ---------- -------G-U CC-G--A-AG ---CAG-(-- --------UC 541 AU-------- -)-CUN---A UU-UG----G AC--GAAA-- ---GGUA--- ---------- 601 --(------- ---UAUUC-- ---)------ ---------| ---UAU--C- G--GUA---- 661 ----AUGG-- AUG---G-|G GAUGC----- -GU|----CC G--AUUA-G- CCA-G---CC 721 GG-CG-GG-( GU-AAC-GG) -C-CCACC-G G|-GGC-AU- CGA------- -----UC-GG 781 U-AG-G-GG| -U-UCU--(G -AGA)-GGAA ----GG-U-- CCC-C|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 AGG-AAUAUU G-GUCAAU-- GG-GC-(GUA A)-GCC-UGA ACCA|-GCCA AGUA-GC-GU 961 G-C-AG-G-A U-GAC--G-G CC(C-UA-U- -G)GG-UUGU AAA--CUNC| UUUU-AU-GC 1021 --GG-GGA-- UA-AAGG-UU --GGG-A--( -----CGUG- ---------) --UC-CN-NN 1081 ---------- -------U-U U-GC-AGGU- A-CCG-C-AU G-AA--UAAG ---------G 1141 -ACCGGCU-A AUUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAA |-GGUC-C-- 1201 NGG-CGUUAU CC-GGAUUUA -UU-GGGU|U UAAA-GGGA- GCG-UAG-GC -C|-GN-NN- 1261 U-UU-AAG|C GUG---CUGU G-AAA-UG-U AC-CGG-C(- UC-A)A-CCG -GU-N-AUG- 1321 -UGCA-GCGC G-AAC-UGGG A-AUCUU-GA GUA-----CG C-AG-UAAGC AGG-C|GGAA 1381 UU-CGUGGU- GUA-GCG(-G UGAAA)-UGC -UU-AGAU-A UC-ACGAAG- AACU-CCGA- 1441 -U-U-GC(-G UA-G)GCAG- -CUUGCUG-- ---------- ---------- ---------U 1501 AGC--GU-AA CUGACG-CUG AA-G------ -------CU- C-GAAA-GU- GC-GGG-UA- 1561 UC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CGC- A-CG-GU--A 1621 AAC-G-AUGG A--UG-CC-- -------C|G -CU-GU-CGG -CC------- ---------- 1681 -(NNU-UU)U ---------- ---------- ---------- ---------G -GUCGG-UGG 1741 CC--AA---- --GC-(GAA- ---A)G-CG- UUAA-GCAUC C|C|A-CCU- G-GGGAGUAC 1801 GCC-G---(G CAA)---C-G GU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGAGG-AAC A-U-GU-GGU -UUAAUU-CG -(AUGAUA-C G)--CGAGGA 1921 A-CCUUA-CC CGG-GC-UUG AAC-UG|--- -------C-C ---AUUG--- -AC----UUG 1981 -AAU-A--(- GAGA-)-UAU -U-CAU---- U--------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- -----G---| CAU-UG-GUG |---G|A--G 2161 GU-GC-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GC-C(-GUG A)-GGUGU-C 2221 GG-C-(UUAA -GU)-GCCAU AA-------- CGAG-C--GC AACCC-CU-N |-UU--UUC- 2281 AG--UUGC-C AU-CGG---- ---------- ---------- ---U(---UA ---AAG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CCG|G 2701 G-CN-CU-C- U-GUG-AA-U A-CU-G-CCG --CC(-G--U AA)-GGU-GU -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AG CAC-G-GC-C CUUAC-G-UC -CG--GGGC- 2821 U-ACA-CA-C GUG--UUACA AUGGC-G-CG -UA--CAGCG AGU-C-G-G- CC-GUA-U(G 2881 -UAA)AUGC- ---------- GG-UCCAA-U CCUU--AAAA -CG-U-GCC- UCAGUUCGGA 2941 C-UGGGGUC- (UGCAAC-C- C)-GACCCCA -CGAAGC-UG -GAUU-CGC- -UAGUA-AUC 3001 GC-GCA-(UC -AGCCAU)-G GCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-AAG--- --CCA-UGAA A--GC-CGG- GG-GU-GCCU -GAA-G-UCC 3121 G-U------- -GA-CC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGG------ U-CG-GC-CU A-AGGC-AAU ACU-GG-UA- AUU-GGGG-C 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Prv.buccls 4376 bp RNA RNA 02-JUL-1998 DEFINITION Prevotella buccalis. ACCESSION No information KEYWORDS No information. SOURCE Prevotella buccalis. ORGANISM Prevotella buccalis. REFERENCE 1 AUTHORS Paster,B.J., Dewhirst,F.E., Olsen,I. and Fraser,G.J. TITLE Phylogeny of Bacteroides, Prevotella, and Porphyromonas spp. and related bacteria JOURNAL J. Bacteriol. 176, 725-732 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: L16476 biol_source= dental plaque BASE COUNT 346 a 344 c 459 g 313 t 2914 others ORIGIN 1 .......... .......... .......... ..UACAAUGU AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAU -NAAC-GC-- UAGC-UAC-A -GGC-UU--A ACAC-AUGCA A-GUC-GCAG 121 G--GU-AA-C GU-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -GAGGGA-AG (--CU----- ---------- ---------- 241 --------UG -)CU-UCCCU U--------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- ACG|-AC--G ACUG-GCGC- 361 -A-CG-GG-U GAGU---AAC -GC-GUAUC- CAA--CCU-U C-CCAU---G -ACCA-C-GG 421 -GAU-AA-CC C--------- ------GU-- U(-GAAA-)G -ACGG-A--C UAAUACC-GU 481 AU-GAC---- ---------- -------G-U CG-U--U-UG ---CUG-(-- --------AC 541 AU-------- -)-CAA---A UA-AC----G AU--UAAA-- ---GG----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----G--C- G--GUG---- 661 ----AUGG-- AUG---G-|G GAUGC----- -GU|----CU G--AUUA-G- CUU-G---UU 721 GG-CG-GG-( GU-AAC-GG) -C-CCACC-A A|-GGC-GA- CGA------- -----UC-AG 781 U-AG-G-GG| -U-UCU--(G -AGA)-GGAA ----GG-U-- CCC-C|C-AC -AUUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -NAA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 AGG-AAUAUU G-GUCAAU-- GG-GC-(GAG A)-GCC-UGA ACCA|-GCCA AGUA-GC-GU 961 G-C-AG-G-A U-GAC--G-G CC(C-UA-U- -G)GG-UUGU AAA--CUGC| UUUU-AU-GC 1021 --GG-GGA-- UA-AAGU-GY --GCG-A--( -----CGUG- ---------) --UC-GU-GC 1081 ---------- -------A-U U-GC-AGGU- A-CCG-C-AU G-AA--UAAG ---------G 1141 -ACCGGCU-N AUUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAA |-GGUC-C-- 1201 NGG-CGUUAU CC-GGAUUUA -UU-GGGU|U UNNA-GGGA- GCG-UAG-GC -C|-GC-CA- 1261 G-GU-AAG|C GUG---UUGU G-AAA-UG-U AC-CGG-C(- UC-A)A-CCG -GU-N-AAU- 1321 -UGCA-GCGC G-AAC-UGUC U-GGCUU-GA GUG-----CA C-GG-UAAGC AGG-C|GGAA 1381 UU-CAUGGU- GUA-GCG(-G UGAAA)-UGC -UU-AGAU-A UC-AUGAAG- AACU-CCGA- 1441 -U-U-GC(-G AA-G)GCAG- -CUUGCUG-- ---------- ---------- ---------C 1501 AGU--GC-GA CUGACG-CUG AU-G------ -------CU- C-GAAG-GU- GC-GGG-UA- 1561 UC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CGC- A-CG-GU--A 1621 AAC-G-AUGG A--UG-CC-- -------C|C -UG-UU-CCG -CC------- -U-------- 1681 -(UUU-UG)U ---------- ---------- ---------- ---------G -GCGGN-UGG 1741 CC--AA---- --GC-(GAA- ---A)G-CG- UUAA-GCAUC C|C|A-CCU- G-GGGAGUAC 1801 GCC-G---(G CAA)---C-G GU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGAGG-AAC A-U-GU-GGU -UUAAUU-CG -(AUGNUA-C G)--CGAGGA 1921 A-CCUUA-CC CGG-GC-UUG AAC-UG|--- -------C-C ---AGUG--- -AA----CGA 1981 -UAC-A--(- GAGA-)-UGU -U-GAGG--- ---------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- -----G---| CGC-UG-GUG |---G|A--G 2161 GU-GC-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GC-C(-GUG A)-GGUGU-C 2221 GG-C-(UUAA -GU)-GCCAU AA-------- CGAG-C--GC AACCC-CN-N |-UU--UUC- 2281 AG--UUGC-C AU-CAG---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CUG|G 2701 G-CA-CU-C- U-GGA-GA-U A-CU-G-CCA --CC(-G--C AA)-GGU-GU -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AG CAC-G-GC-C CUUAC-G-UC -CG--GGGC- 2821 U-ACA-CA-C GUG--UUACA AUGGG-G-CA -UA--CAGAG UGU-U-G-G- CU-UAA-C(G 2881 -CAA)GUUU- ---------- GG-UCUAA-U CUUC--AAAG -UG-U-CUC- CCAGUUCGGA 2941 C-UGGGGUC- (UGCAAC-C- C)-GACCCCA -CGAAGC-UG -GAUU-CGC- -UAGUA-AUC 3001 GC-GCA-(UC -AGCCAU)-G GCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-AAG--- --CCA-UGAA A--GC-CGG- GG-GU-GCCU -GAA-G-UCC 3121 G-U------- -AA-CC---- ---------- ---------- -----(---- -GUCAA---- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGA------ G-CG-GC-CU A-GGGC-AAA ACU-GG-UG- AU........ 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Prv.bivia 4376 bp RNA RNA 02-JUL-1998 DEFINITION Prevotella bivia. ACCESSION No information KEYWORDS No information. SOURCE Prevotella bivia. ORGANISM Prevotella bivia. REFERENCE 1 AUTHORS Paster,B.J., Dewhirst,F.E., Olsen,I. and Fraser,G.J. TITLE Phylogeny of Bacteroides, Prevotella, and Porphyromonas spp. and related bacteria JOURNAL J. Bacteriol. 176, 725-732 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: L16475 biol_source= urogenital tract BASE COUNT 372 a 323 c 435 g 331 t 2915 others ORIGIN 1 .......... .......... .......... ...ACAAUGG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAU -NAAC-GC-- UAGC-UAU-A -GGC-UU--A ACAC-AUGCA A-GUC-GAGG 121 G--GC-AG-C GA-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -AUAGAU-AG (--CU----- ---------- ---------- 241 --------UG -)CU-AUUUA U--------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- UCG|-GC--G ACCG-GCGC- 361 -A-CG-GG-U GAGU---AAC -GC-GUAUC- CAA--CCU-A C-CCAU---A -ACUA-A-GG 421 -GAU-AA-CC C--------- ------AG-- C(-GAAA-)G -UUGG-A--C UNAUACC-UN 481 AU-GUA---- ---------- -------U-U CG-U--U-UG ---AUC-(-- --------UC 541 AU-------- -)-GAG---A UU-NC----G AA--UAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--GUU---- 661 ----AUGG-- AUG---G-|G GAUGC----- -GU|----CU G--AUUA-G- CUU-G---UU 721 GG-CG-GG-( GU-AAC-GG) -C-CCACC-A A|-GGC-AA- CGA------- -----UC-AG 781 U-AG-G-GG| -U-UCU--(G -AGA)-GGAA ----GG-U-- CCC-C|C-AC -AUUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -NAA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 AGG-AAUAUU G-GUCAAU-- GG-AC-(GCA A)-GUC-UGA ACCA|-GCCA AGUA-GC-GU 961 G-C-AG-G-A U-GAC--G-G CC(C-UA-U- -G)GG-UUGU AAA--CUNC| UUUU-AU-AU 1021 --GG-GGA-- UA-AAGU-GG --GGA-A--( -----CGUG- ---------) --UU-CC-CN 1081 ---------- -------U-U U-GC-AGGU- A-CCA-U-AU G-AA--UAAG ---------G 1141 -ACCGGCU-N AUUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAA |-GGUU-C-- 1201 GGG-CGUUAU CC-GGAUUUA -UU-GGGU|U UAAA-GGGA- GCG-UAG-GC -C|-GU-UU- 1261 G-GU-AAG|C GUG---UUGU G-AAA-UG-U AG-UAG-C(- UC-A)A-CUU -CU-A-GAU- 1321 -UGCA-GCGC G-AAC-UGUC A-GACUU-GA GUG-----CG C-AC-AACGU AGG-C|GGAA 1381 UU-CAUGGU- GUA-GCG(-G UGAAA)-UGC -UU-AGAU-A UC-AUGAAG- AACU-CCGA- 1441 -U-U-GC(-G AA-G)GCAG- -CUUACGG-- ---------- ---------- ---------G 1501 AGC--GC-AA CUGACG-CUG AA-G------ -------CU- C-GAAG-GU- GC-GGG-UA- 1561 UC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CGC- A-CA-GU--A 1621 AAC-G-AUGG A--UG-CC-- -------C|G -CU-GU-UAG -CA------- ---------- 1681 -(CCU-AG)- ---------- ---------- ---------- ---------U -GUUAG-CGG 1741 CU--AA---- --GC-(GAA- ---A)G-CA- UUAA-GCAUC C|C|A-CCU- G-GGGAGUAC 1801 GCC-G---(G CAA)---C-G GU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGAGG-AAC A-U-GU-GGU -UUAAUU-CG -(AUGAUA-C G)--CGAGGA 1921 A-CCUUA-CC CGG-GC-UUG AAU-UG|--- -------C-A ---GAUG--- -AA----CGA 1981 -UUU-A--(- GAGA-)-UAA -U-GAGG--- U--------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- -----A---| CAU-CU-GUG |---A|A--G 2161 GU-GC-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GC-C(-GUG A)-GGUGU-C 2221 GG-C-(UUAA -GU)-GCCAU AA-------- CGAG-C--GC AACCC-CN-N |-UC--UUU- 2281 AG--UUGC-C AU-CAG---- ---------- ---------- ---G(---UU ---CUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CUG|G 2701 G-CA-CU-C- U-GGA-GA-U A-CU-G-CCA --CC(-G--U AA)-GGU-GU -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AG CAC-G-GC-C CUUAC-G-UC -CG--GGGC- 2821 U-ACA-CA-C GUG--UUACA AUGGG-U-GG -UA--CAGAU AGU-U-G-G- UC-GUG-U(G 2881 -CAA)AUAC- ---------- GA-UCUAA-U CCUU--AAAA -CC-A-UUC- UCAGUUCGGA 2941 C-UGGGGUC- (UGCAAC-C- C)-GACCCCA -CGAAGC-UG -GAUU-CGC- -UAGUA-AUC 3001 GC-GCA-(UC -AGCCAU)-G GCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-AAG--- --CCA-UGAA A--GC-CGG- GG-GU-GCCU -GAA-G-UUC 3121 G-U------- -GA-CC---- ---------- ---------- -----(---- -GUAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGA------ U-CG-AC-CU A-GGGC-AAA ACU-GG-UA- AU........ 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS str.3_3 4376 bp RNA RNA 02-JUL-1998 DEFINITION str. PUS3.3. str. PUS3.3. ACCESSION No information KEYWORDS No information. SOURCE str. PUS3.3. str. PUS3.3. ORGANISM str. PUS3.3. REFERENCE 1 AUTHORS Dymock,D., Weightman,A.J., Scully,C. and Wade,W.G. TITLE Molecular analysis of microflora associated with dentoalveolar abscesses JOURNAL J. Clin. Microbiol. 34, 537-542 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: U43698|g1172142 isolate_name= PUS3.3 BASE COUNT 346 a 351 c 460 g 296 t 2923 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......GAU -GAAC-GC-- UGGC-UAC-A -GGC-UU--A ACAC-AUGCA A-GUC-GAGG 121 G--GA-AA-C GA-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -CGGGGA-AG (--CU----- ---------- ---------- 241 --------UG -)CU-UCCCG G--------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- GCG|-UC--G ACCG-GCGC- 361 -A-CG-GG-U GAGU---AAC -GC-GUAUC- CAA--CCU-G C-CUCU---G -ACUG-A-GG 421 -GAU-AA-CC C--------- ------GU-- C(-GAAA-)G -UCGG-C--C UAAUACC-UC 481 AU-GGC---- ---------- -------A-U CG-U--C-UG ---CGG-(-- --------GC 541 AU-------- -)-CCA---A CG-AC----G AU--UAAA-- ---GA----- ---------- 601 --(------- ---UUUCA-- ---)------ ---------| -----U--C- G--GUC---- 661 ----AGGG-- AUG---G-|G GAUGC----- -GU|----CU G--AUUA-G- CUA-G---UU 721 GG-CG-GG-( GU-AAC-GG) -C-CCACC-A A|-GGC-GA- CGA------- -----UC-AG 781 U-AG-G-GG| -U-UCU--(G -AGA)-GGAA ----GG-U-- CCC-C|C-AC -AUUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AAA-C-UC- -(UACG)--G GAG-GC-AG- C-A---GU-G 901 AGG-AAUAUU G-GUCAAU-- GG-GC-(GAG A)-GCC-UGA ACCA|-GCCA AGUA-GC-GU 961 G-C-AG-G-A U-GAC--G-G CC(C-UA-U- -G)GG-UUGU AAA--CUGC| UUUU-AU-GC 1021 --GG-GGA-- UA-AAGU-GA --GGG-A--( -----CGUG- ---------) --UC-CU-UC 1081 ---------- -------A-U U-GC-AGGU- A-CCG-C-AU G-AA--UAAG ---------G 1141 -ACCGGCU-A AUUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAA |-GGUC-C-- 1201 GGG-CGUUAU CC-GGAUUUA -UU-GGGU|U UAAA-GGGA- GCG-UAG-GC -C|-GU-GG- 1261 A-UU-AAG|C GUG---UUGU G-AAA-UG-C AG-GUG-C(- UC-A)A-CGU -CU-G-CAC- 1321 -UGCA-GCGC G-AAC-UGGU C-CACUU-GA GUG-----UG C-AC-AACGC AGG-C|GGAA 1381 UU-CGUCGU- GUA-GCG(-G UGAAA)-UGC -UU-AGAU-A UG-ACGAAG- AACU-CCGA- 1441 -U-U-GC(-G AA-G)GCAG- -CUUGCGG-- ---------- ---------- ---------G 1501 AGC--AC-AA CUGACG-CUG AA-G------ -------CU- C-GAAA-GU- GC-GGG-UA- 1561 UC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CGC- A-CG-GU--A 1621 AAC-G-AUGG A--UG-CC-- -------C|G -UU-GU-CAG -GC------- -U-------- 1681 -(GUU-UC)A ---------- ---------- ---------- ---------G -CCUGG-UGA 1741 CC--AA---- --GC-(GAA- ---A)G-CA- UUAA-GCAUC C|C|A-CCU- G-GGGAGUAC 1801 GCC-G---(G CAA)---C-G GU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGAGG-AAC A-U-GU-GGU -UUAAUU-CG -(AUGAUA-C G)--CGAGGA 1921 A-CCUUA-CC CUG-GC-UUG AAUUUG|--- -------C-A ---GACG--- -AA----GGC 1981 -UUC-A--(- GAGA-)-UGA -A-G-CG--- G--------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------U C-)------- GG-------- -----G---| CGU-CU-GUG |---A|A--G 2161 GU-GC-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GC-C(-GUG A)-GGUGU-C 2221 GG-C-(UUAA -GU)-GCCAU AA-------- CGAG-C--GC AACCC-CU-U |-UC--UUC- 2281 AG--UUGC-C AU-CAG---- ---------- ---------- ---G(---UG ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CUG|G 2701 G-CA-CU-C- U-GUA-GA-U A-CU-G-CCA --CC(-G--C AA)-GGU-GU -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AG CAC-G-GC-C CUUAC-G-UC -CG--GGGC- 2821 U-ACA-CA-C GUG--UUACA AUGGC-C-GG -UA--CAGAG AGU-C-G-G- UC-GUG-U(G 2881 -CAA)ACAC- ---------- GA-UCUAA-U CCUU--AAAU -CC-G-GUC- CCAGUUCGGA 2941 C-UGGGGUC- (UGCAAC-C- C)-GACCCCA -CGAAGC-UG -GAUU-CGC- -UAGUA-AUC 3001 GC-GCA-(UC -AGCCAU)-G GCG-CGGUG- AAUAU-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-AAG--- --CCA-UGAA A--GC-CGG- GG-GU-GCCU -GAA-G-UCU 3121 G-U------- -GA-CC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGA------ A-CG-GC-CU A-GGGC-AAA ACC-GG-UG- AUU-GGGG-C 3301 U......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Prv.oris 4376 bp RNA RNA 02-JUL-1998 DEFINITION Prevotella oris. ACCESSION No information KEYWORDS No information. SOURCE Prevotella oris. ORGANISM Prevotella oris. REFERENCE 1 AUTHORS Paster,B.J., Dewhirst,F.E., Olsen,I. and Fraser,G.J. TITLE Phylogeny of Bacteroides, Prevotella, and Porphyromonas spp. and related bacteria JOURNAL J. Bacteriol. 176, 725-732 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: L16474 biol_source= gingival crevice BASE COUNT 349 a 354 c 465 g 300 t 2908 others ORIGIN 1 .......... .......... .......... ..UACNAUGG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAU -NAAC-GC-- UGGC-UAC-A -GGC-UU--A ACAC-AUGCA A-GUC-GAGG 121 G--GA-AA-C GA-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -CGGGGA-AG (--CU----- ---------- ---------- 241 --------UG -)CU-UCCCC G--------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- GCG|-UC--G ACCG-GCGC- 361 -A-CG-GG-U GAGU---AAC -GC-GUAUC- CAA--CCU-G C-CUCU---G -ACUG-A-GG 421 -GAU-AA-CC C--------- ------GU-- C(-GAAA-)G -UCGG-C--C UAAUACC-UC 481 AU-GGC---- ---------- -------A-U CG-U--C-UG ---CGG-(-- --------GC 541 AU-------- -)-CCA---A CG-AC----G AU--UAAA-- ---GA----- ---------- 601 --(------- ---UUUCA-- ---)------ ---------| -----U--C- G--GUC---- 661 ----AGGG-- AUG---G-|G GAUGC----- -GU|----CU G--AUUA-G- CUU-G---UU 721 GG-CG-GG-( GU-AAC-GG) -C-CCACC-A A|-GGC-GN- CGA------- -----UC-AG 781 U-AG-G-GG| -U-UCU--(G -AGA)-GGAA ----GG-U-- CCC-C|C-AC -AUUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AAA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 AGG-AAUAUU G-GUCAAU-- GG-GC-(GAG A)-GCC-UGA ACCA|-GCCA AGUA-GC-GU 961 G-C-AG-G-A U-GAC--G-G CC(C-UA-U- -G)GG-UUGU AAA--CUNC| UUUU-AU-GC 1021 --GG-GGA-- UA-AAGU-GA --GGG-A--( -----CGUG- ---------) --UC-CU-UC 1081 ---------- -------A-U U-GC-AGGU- A-CCG-C-AU G-AA--UAAG ---------G 1141 -ACCGGCU-N AUUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAA |-GGUC-C-- 1201 NGG-CGUUAU CC-GGAUUUA -UU-GGGU|U UAAA-GGGA- GCG-UAG-GC -C|-GU-GG- 1261 A-UU-AAG|C GUG---UUGU G-AAA-UG-C AG-GUG-C(- UC-A)A-CGU -CU-G-CAC- 1321 -UGCA-GCGC G-AAC-UGGU C-CACUU-GA GUG-----UG C-GC-AACGC AGG-C|GGAA 1381 UU-CGUCGU- GUA-GCG(-G UGAAA)-UGC -UU-AGAU-A UG-ACGAAG- AACU-CCGA- 1441 -U-U-GC(-G AA-G)GCAG- -CUUGCGG-- ---------- ---------- ---------G 1501 AGC--AC-AA CUGACG-CUG AA-G------ -------CU- C-GAAA-GU- GC-GGG-UA- 1561 UC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CGC- A-CG-GU--A 1621 AAC-G-AUGG A--UG-CC-- -------C|G -UU-GU-CAG -GC------- -U-------- 1681 -(GUU-UC)A ---------- ---------- ---------- ---------G -CCUGG-UGA 1741 CC--AA---- --GC-(GAA- ---A)G-CA- UUAA-GCAUC C|N|A-CCU- G-GGGAGUAC 1801 GCC-G---(G CAA)---C-G GU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGAGG-AAC A-U-GU-GGU -UUAAUU-CG -(AUGAUA-C G)--CGAGGA 1921 A-CCUUA-CC CGG-GC-UUG AAU-UG|--- -------C-A ---GACG--- -AA----SGM 1981 -UUC-A--(- GAGA-)-UGA -U-GACG--- G--------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- -----G---| CGU-CU-GUG |---A|A--G 2161 GU-GC-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GC-C(-GUG A)-GGUGU-C 2221 GG-C-(UNAA -GU)-GCCAU AA-------- CGAG-C--GC AACCC-NU-N |-UC--UUC- 2281 AG--UUGC-C AU-CAG---- ---------- ---------- ---G(---UG ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CUG|G 2701 G-CA-CU-C- U-GGA-GA-C A-CU-G-CCA --CC(-G--C AA)-GGU-GU -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AG CAC-G-GC-C CUUAC-G-UC -CG--GGGC- 2821 U-ACA-CA-C GUG--UUACA AUGGC-C-GG -UA--CAGAG AGU-U-G-A- UU-UUG-U(G 2881 -CAA)ACAC- ---------- GA-UCUAA-U CCUU--AAAU -CC-G-GUC- CCAGUUCGGA 2941 C-UGGGGUC- (UGCAAC-C- C)-GACCCCA -CGAAGC-UG -GAUU-CGC- -UAGUA-AUC 3001 GC-GCA-(UC -AGCCAU)-G GCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-AAG--- --CCA-UGAA A--GC-CGG- GG-GU-GCCU -GAA-G-UCU 3121 G-U------- -GA-CC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGA------ A-CG-GC-CU A-GGGC-AAA ACC-GG-UG- AUU-GGGG.. 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Prv.rumco6 4376 bp RNA RNA 02-JUL-1998 DEFINITION Prevotella ruminicola str. 223/M2/7. ACCESSION No information KEYWORDS No information. SOURCE Prevotella ruminicola str. 223/M2/7. ORGANISM Prevotella ruminicola. REFERENCE 1 AUTHORS Avgustin,G., Wright,F. and Flint,H.J. TITLE Genetic diversity and phylogenetic relationships among strains of Prevotella (Bacteroides) ruminicola from the rumen JOURNAL Int. J. Syst. Bacteriol. 44, 246-255 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: S70881|g546816 isolate_name= 223/M2/7 BASE COUNT 94 a 87 c 124 g 82 t 3989 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .......UG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAA |-GGUC-C-- 1201 GGG-CGUUAU CC-GGAUUUA -UU-GGGU|U UAAA-GGGA- GCG-UAG-GC -C|-GU-GG- 1261 A-UU-AAG|U GUG---UUGU G-AAA-UG-U AG-GCG-C(- UC-A)A-CGU -CU-G-ACU- 1321 -UGCA-GCGC A-UAC-UGGU C-CACUU-GA GUG-----CG C-NC-AACGC GGG-C|GGAA 1381 UU-UGUCGU- GUA-GCG(-G UGAAA)-UGC -UU-AGAU-A UG-ACGAAG- AACC-CCGA- 1441 -U-U-GC(-G AA-G)GCAG- -CUCGCGG-- ---------- ---------- ---------G 1501 AGC--CN-AA CUGACG-CUG AA-G------ -------CU- C-GAAA-GU- GC-GGG-UA- 1561 UC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CGC- A-CG-GU--A 1621 AAC-G-AUGG A--UG-CC-- -------C|G -CU-UU-UCG -GU------- ---------- 1681 -(CAU-UA)G ---------- ---------- ---------- ---------A -CCGUG-AGG 1741 CC--AA---- --GU-(GAA- ---A)A-CA- UUAA-GCAUC C|C|A-CCU- G-GGGAGUAC 1801 GCC-G---(G CAA)---C-G GU-GA..... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Prv.rumco7 4376 bp RNA RNA 02-JUL-1998 DEFINITION Prevotella ruminicola str. M384. ACCESSION No information KEYWORDS No information. SOURCE Prevotella ruminicola str. M384. ORGANISM Prevotella ruminicola. REFERENCE 1 AUTHORS Avgustin,G., Wright,F. and Flint,H.J. TITLE Genetic diversity and phylogenetic relationships among strains of Prevotella (Bacteroides) ruminicola from the rumen JOURNAL Int. J. Syst. Bacteriol. 44, 246-255 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: S70838|g546817 isolate_name= M384 BASE COUNT 96 a 83 c 123 g 87 t 3987 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .......UG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAA |-GGUC-C-- 1201 GGG-CGUUAU CC-GGAUUUA -UU-GGGU|U UAAA-GGGA- GCG-UAG-GC -G|-GU-AU- 1261 A-UU-AAG|C GUG---UUGU G-AAA-UG-U AG-GUG-C(- UC-A)A-CAU -CU-G-ACU- 1321 -UGCA-GCGC G-AAC-UGGU U-UACUU-GA GUA-----CG C-AC-AACGU AGG-C|GGAA 1381 UU-CGUCGU- GUA-GCG(-G UGAAA)-UGC -UU-AGAU-A UG-ACGAAG- AACU-CCGA- 1441 -U-U-GC(-G AA-G)GCAG- -CUUACGG-- ---------- ---------- ---------G 1501 AGC--GC-CA CUGACG-CUG AA-G------ -------CU- C-GAAA-GU- GC-GGG-UA- 1561 UC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CGC- A-CG-GU--A 1621 AAC-G-AUGG A--UG-CC-- -------C|G -CU-CU-GAG -UC------- ---------- 1681 -(CUU-UU)G ---------- ---------- ---------- ---------G -AUUUG-GGG 1741 CC--AA---- --GC-(GAA- ---A)G-CA- UUAA-GCAUC C|C|A-CCU- G-GGGAGUAC 1801 GCC-G---(G CAA)---C-G GU-GA..... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Prv.oulora 4376 bp RNA RNA 02-JUL-1998 DEFINITION Prevotella oulora str. WPH 179 ATCC 43324 (T). ACCESSION No information KEYWORDS No information. SOURCE Prevotella oulora str. WPH 179 ATCC 43324 (T). ORGANISM Prevotella oulora. REFERENCE 1 AUTHORS Paster,B.J., Dewhirst,F.E., Olsen,I. and Fraser,G.J. TITLE Phylogeny of Bacteroides, Prevotella, and Porphyromonas spp. and related bacteria JOURNAL J. Bacteriol. 176, 725-732 (1994) STANDARD No information COMMENTS Organism information Culture collection: ATCC 43324 (T) Sequence information (bases 1 to 4376) Corresponding GenBank entry: L16472 Former RDP Sids: Prv.oulera ATCC 43324 (T) = NCTC 11871 biol_source= human gingival crevice isolate_name= WPH 179 BASE COUNT 355 a 321 c 435 g 311 t 2954 others ORIGIN 1 .......... .......... .......... ...ACNAUGG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAU -NAAC-GC-- UAGC-UAC-A -GGC-UU--A ACAC-AUGCA A-GUC-GAGG 121 G--GA-AA-C GA-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- UGACGAG-AG (--CU----- ---------- ---------- 241 --------UG -)CU-CUNNU NA-------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- GCG|-UN--G ACCG-GCGC- 361 -A-CG-GG-U GAGU---AAC -GC-GUAUC- CAA--CCU-G C-CCAU---U -ACAG-G-GG 421 -AAU-AA-CC U--------- ------GG-- C(-GAAA-)G -UCAG-A--C UAAUGCC-CC 481 AU-GGU---- ---------- -------A-U UC-U--C-NG ---CAG-(-- --------AC 541 AU-------- -)-CUG---A UN-NN----G AU--UAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--GUA---- 661 ----AUGG-- AUG---G-|G GAUGC----- -GU|----CU G--AUUA-G- CUU-G---UU 721 GG-CG-GG-( GU-NAC-GG) -C-CCACN-A A|-GGC-NA- CGA------- -----UC-AG 781 U-AG-G-GG| -U-UCU--(G -AGA)-GGAA ----GG-U-- CCC-C|C-AC -AUUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -NAA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 AGG-AAUAUU G-GUCAAU-- GG-GC-(GAG A)-GCC-UGA ACCA|-GCCA AGUA-GC-GU 961 G-C-AG-G-A A-GAC--G-G CC(C-UA-U- -G)GG-UUGU AAA--CUNC| UUUU-AU-GN 1021 --GG-GAA-- UA-AAGU-GG --NNU-A--( -----CGUG- ---------) --UA-GU-UU 1081 ---------- -------A-U U-GU-AUGU- A-CCC-U-AU G-AA--UAAG ---------G 1141 -ACCGGCU-A AUUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAA |-GGUU-C-- 1201 NGG-CGUUAU CC-GGAUUUA -UU-GGGU|U UAAA-GGGA- GCG-UAG-GC -C|-GU-AG- 1261 A-UU-AAG|C GUG---UUGU G-AAA-UG-U AG-AUG-C(- UC-A)A-CAU -CU-N-ACU- 1321 -UGCA-GCNC G-AAC-UNGU U-UACUU-GA GUG-----UG C-AC-AACGU AGG-C|GGAA 1381 UU-CGUCGU- GUA-GCG(-G UGAAA)-UGC -UU-AGAU-A UG-ACGAAG- AACU-CCGA- 1441 -U-U-GC(-G AA-G)GCAG- -CUUACGG-- ---------- ---------- ---------G 1501 AGC--AC-AA CUGACG-CUU AA-G------ -------CU- N-GAAG-GU- GU-NGG-UA- 1561 UC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CGC- A-CA-GU--N 1621 AAC-G-CUGG A--UG-CC-- -------C|G -CU-GU-UGG -CU------- ---------- 1681 -(NNU-UN)G ---------- ---------- ---------- ---------A -GUCAG-CGG 1741 CU--AA---- --GC-(GAA- ---A)G-CA- UUNA-GCAUC C|N|A-CCU- G-GGGAGUAC 1801 GCC-G---(G CAA)---C-G GU-GAAACUC -NAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGAGG-AAC A-U-GU-GGU -UUAAUU-CG -(AUGNUA-C G)--CGAGGA 1921 A-CCUUA-CC CGG-GC-UUN AAU-UG|--- -------C-A ---GACG--- -AA----CGC 1981 -GGC-A--(- GAGA-)-UGC -N-NAGG--- ---------- ---CN----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- -----G---| NNU-CU-NNN |---A|A--G 2161 GU-GC-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GC-C(-GUG A)-GGUGU-C 2221 GG-C-(UNAA -GU)-GCCAU AA-------- CGAG-C--GC AACCC-CU-A |-UU--CUU- 2281 AG--UUGC-C AU-CAN---- ---------- ---------- ---G(---UC ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CUG|G 2701 G-CA-CU-C- U-GGG-AA-U A-CU-G-CCN --NN(-G--U AA)-GGU-GU -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UN -A-AAUC-AG CAC-G-GC-C CUUAC-G-UC -CG--GGGC- 2821 U-ACA-CA-C GUG--UUACA AUGGC-C-GG -UA--CAGAG GGC-A-G-G- UU-GCA-U(G 2881 -UAA)AUGC- ---------- GA-UCGAA-U CUUG--AAAG -CC-G-GUC- CCAGUUCGGA 2941 C-UGAGGUC- (UGCAAC-C- C)-GACCUCA -CGAAGC-UG -GAUU-CGC- -UAGUA-AUC 3001 GC-GCA-(UC -AGCCAU)-G GCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-AAG--- --NCA-UGAA A--GC-CGG- GG-GU-GCCU -NAA-G-UCC 3121 G-U------- -UA-CC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGA------ U-CG-GC-CU A-GGGC-NAA ACU-GG-UN- AU........ 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Prv.melani 4376 bp RNA RNA 02-JUL-1998 DEFINITION Prevotella melaninogenica str. B282 ATCC 25845 (T). ACCESSION No information KEYWORDS No information. SOURCE Prevotella melaninogenica str. B282 ATCC 25845 (T). ORGANISM Prevotella melaninogenica. REFERENCE 1 AUTHORS Paster,B.J., Dewhirst,F.E., Olsen,I. and Fraser,G.J. TITLE Phylogeny of Bacteroides, Prevotella, and Porphyromonas spp. and related bacteria JOURNAL J. Bacteriol. 176, 725-732 (1994) STANDARD No information COMMENTS Organism information Culture collection: ATCC 25845 (T) Sequence information (bases 1 to 4376) Corresponding GenBank entry: L16469 ATCC 25845 (T) = VPI 4196 = JCM 6325 = VPI 2381 biol_source= sputum isolate_name= B282 BASE COUNT 361 a 335 c 447 g 314 t 2919 others ORIGIN 1 .......... .......... .......... ..UACNAUGG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAU -NAAC-GC-- UAGC-UAC-A -GGC-UU--A ACAC-AUGCA A-GUC-GAGG 121 G--GA-AA-C GG-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- CAUUGAG-UG (--CU----- ---------- ---------- 241 --------UG -)CA-CUCUU UG-------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- ACG|-UC--G ACCG-GCGC- 361 -A-CG-GG-U GAGU---AAC -GC-GUAUC- CAA--CCU-U C-CCAU---U -ACUG-U-GG 421 -GAU-AA-CC U--------- ------GC-- C(-GAAA-)G -GCNG-A--C UAAUACC-GC 481 AU-AGU---- ---------- -------C-U UC-G--A-UG ---ACG-(-- --------GC 541 AU-------- -)-CAG---A UU-UG----A AG--UAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--GUA---- 661 ----AUGG-- AUG---G-|G GAUGC----- -GU|----CU G--AUUA-G- CUU-G---UU 721 GG-CG-GG-( GU-AAC-GG) -C-CCACC-A A|-GGC-AA- CGA------- -----UC-AG 781 U-AG-G-GG| -U-UCU--(G -AGA)-GGAA ----GG-U-- CCC-C|C-AC -AUUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -NAA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 AGG-AAUAUU G-GUCAAU-- GG-AC-(GGA A)-GUC-UGA ACCA|-GCCA AGUA-GC-GU 961 G-C-AG-G-A U-GAC--G-G CC(C-UN-U- -G)GG-UUGU AAA--CUNC| NUUU-GU-AU 1021 --GG-GGA-- UA-AAGU-UA --GGN-A--( -----CGUG- ---------) --UC-CC-NA 1081 ---------- -------U-U U-GC-AGGU- A-CCA-U-AC G-AA--UAAG ---------G 1141 -ACCGGCU-N AUUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAA |-GGUC-C-- 1201 NGG-CGUUAU CC-GGAUUUA -UU-GGGU|U UAAA-GGGA- GCG-UAG-GC -U|-GG-AG- 1261 A-UU-AAG|U GUG---UUGU G-AAA-UG-U AG-ACG-C(- UC-A)A-CGU -CU-G-AAU- 1321 -UGCA-GCGC A-UAC-UGGU U-UCCUU-GA GUA-----CG C-NC-AACGU UGG-C|GGAA 1381 UU-CGUCGU- GUA-GCG(-G UGAAA)-UGC -UU-AGAU-A UG-ACGAAG- AACU-CCGA- 1441 -U-U-GC(-G AA-G)GCAG- -CUGACGG-- ---------- ---------- ---------G 1501 AGC--GC-AA CUGACG-CUU AA-G------ -------CU- C-GAAG-GU- GC-NNG-UA- 1561 UC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CGC- A-CA-GU--A 1621 AAC-G-AUGG A--UG-CC-- -------C|G -CU-GU-UGG -UA------- ---------- 1681 -(CCU-NG)- ---------- ---------- ---------- ---------U -AUCAG-CGG 1741 CU--AA---- --GC-(GAA- ---A)G-CA- UUAA-GCAUC C|C|A-CCU- G-GGGAGUAC 1801 GCC-G---(G CAA)---C-G GU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGAGG-AAC A-U-GU-GGU -UUAAUU-CG -(AUGNUA-C G)--CGAGGA 1921 A-CCUUA-CC CGG-GC-UUN AAU-UG|--- -------C-A ---GAGG--- -AA----GGA 1981 -UUU-A--(- GAGA-)-UAA -U-GACG--- ---------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- -----G---| UCU-CU-GUG |---A|A--G 2161 GU-GC-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GC-C(-GUG A)-GGUGU-C 2221 GG-C-(UUAA -GU)-GCCAU AA-------- CGAG-C--GC AACCC-CU-N |-UN--UUC- 2281 AG--UUGC-C AU-CAG---- ---------- ---------- ---G(---UU ---AAG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CUG|G 2701 G-CA-CU-C- U-GGA-GA-C A-CU-G-CCA --CC(-G--U AA)-GGU-GU -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AG CAC-G-GC-C CNUAC-G-UC -CG--GGGC- 2821 U-ACA-CA-C GUG--UUACA AUGGC-C-GG -UA--CAGAG GGA-C-G-G- UG-UAA-U(G 2881 -CAA)AUUG- ---------- CA-UCCAA-U CUUG--AAAG -CC-G-GUC- CCAGUUCGGA 2941 C-UGGGGUC- (UGCAAC-C- C)-GACCCCA -CGAAGC-UG -GAUU-CGC- -UAGUA-AUC 3001 GC-GCA-(UC -AGCCAU)-G GCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-AAG--- --CCA-UGAA A--GC-CGG- GG-GU-GCCU -GAA-G-UCC 3121 G-U------- -GA-CC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGA------ U-CG-GC-CU A-GGGC-AAA ACU-GG-UG- AUN-GGGG.. 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Prv.melan2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Prevotella melaninogenica str. N-58-71A ATCC 43982. ACCESSION No information KEYWORDS No information. SOURCE Prevotella melaninogenica str. N-58-71A ATCC 43982. ORGANISM Prevotella melaninogenica. REFERENCE 1 AUTHORS Paster,B.J., Dewhirst,F.E., Olsen,I. and Fraser,G.J. TITLE Phylogeny of Bacteroides, Prevotella, and Porphyromonas spp. and related bacteria JOURNAL J. Bacteriol. 176, 725-732 (1994) STANDARD No information COMMENTS Organism information Culture collection: ATCC 43982 Sequence information (bases 1 to 4376) Corresponding GenBank entry: L16470 ATCC 43982 = VPI 9343 biol_source= human, atypical isolate_name= N-58-71A BASE COUNT 358 a 338 c 449 g 316 t 2915 others ORIGIN 1 .......... .......... .......... ..UACAAUGG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAU -NAAC-GC-- UAGC-UAC-A -GGC-UU--A ACAC-AUGCA A-GUC-GAGG 121 G--GA-AA-C GG-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- CAUUGAG-UG (--CU----- ---------- ---------- 241 --------UG -)CA-CUCUU UG-------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- ACG|-UC--G ACCG-GCGC- 361 -A-CG-GG-U GAGU---AAC -GC-GUAUC- CAA--CCU-U C-CCAU---U -ACUG-U-GG 421 -GAU-AA-CC U--------- ------GC-- C(-GAAA-)G -GCNG-A--C UAAUAUC-GC 481 AU-AGU---- ---------- -------C-U UC-G--A-UG ---ACG-(-- --------GC 541 AU-------- -)-CAG---A UU-UG----A AG--UAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--GUA---- 661 ----AUGG-- AUG---G-|G GAUGC----- -GU|----CU G--AUUA-G- CUU-G---UU 721 GG-CG-GG-( GU-AAC-GG) -C-CCACC-A A|-GGC-GA- CGA------- -----UC-AG 781 U-AG-G-GG| -U-UCU--(G -AGA)-GGAA ----GG-U-- CCC-C|C-AC -AUUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -NAA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 AGG-AAUAUU G-GUCAAU-- GG-GC-(GAG A)-GCC-UNA ACCA|-GCCA AGUA-GC-GU 961 G-C-AG-G-A U-GAC--G-G CC(C-UN-U- -G)GG-UUGU AAA--CUNC| NUUU-GU-AU 1021 --GG-GGA-- UA-AAGU-CA --GUC-A--( -----CGUG- ---------) --UN-AU-UG 1081 ---------- -------U-U U-GC-AGGU- A-CCA-U-AC G-AA--UAAG ---------G 1141 -ACCGGCU-A AUUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAA |-GGUC-C-- 1201 NGG-CGUUAU CC-GGAUUUA -UU-GGGU|U UAAA-GGGA- GCG-UAG-GC -C|-GG-AG- 1261 A-UU-AAG|U GUG---UUGU G-AAA-UG-U AG-ACG-C(- UC-A)A-CGU -CU-G-ACU- 1321 -UGCA-GCGC A-UAC-UGGU U-UCCUU-GA GUA-----CG C-NC-AACGU UGG-C|GGAA 1381 UU-CGUCGU- GUA-GCG(-G UGAAA)-UGC -UU-AGAU-A UG-ACGAAG- AACU-CCGA- 1441 -U-U-GC(-G AA-G)GCAG- -CUGACGG-- ---------- ---------- ---------G 1501 AGC--GC-AA CUGACG-CUU AA-G------ -------CU- C-GAAG-GU- GC-GGG-UA- 1561 UC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CGC- A-CA-GU--N 1621 AAC-G-AUGG A--UG-CC-- -------C|G -CU-GU-UGG -UA------- ---------- 1681 -(CCU-GG)- ---------- ---------- ---------- ---------U -AUCAG-CGG 1741 CU--AA---- --GC-(GAA- ---A)G-CA- UUAA-GCAUC C|C|A-CCU- G-GGGAGUAC 1801 GCC-G---(G CAA)---C-G GU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGAGG-AAC A-U-GU-GGU -UUAAUU-CG -(AUGNUA-C G)--CGAGGA 1921 A-CCUUA-CC CGG-GC-UUG AAU-UG|--- -------C-A ---GAGG--- -AA----GGA 1981 -UUU-A--(- GAGA-)-UAA -U-GACG--- ---------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- -----G---| UCU-CU-GUG |---A|A--G 2161 GU-GC-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GC-C(-GUG A)-GGUGU-C 2221 GG-C-(UUAA -GU)-GCCAU AA-------- CGAG-C--GC AACCC-CU-C |-UC--UUC- 2281 AG--UUGC-C AU-CAG---- ---------- ---------- ---G(---UG ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CUG|G 2701 G-CA-CU-C- U-GGA-GA-C A-CU-G-CCA --CC(-G--U AA)-GGU-GU -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AG CAC-G-GC-C CUUAC-G-UC -CG--GGGC- 2821 U-ACA-CA-C GUG--UUACA AUGGC-C-GG -UA--CAGAG GGA-C-G-G- UG-UAA-U(G 2881 -CAA)AUUG- ---------- CA-UCCAA-U CUUG--AAAG -CC-G-GUC- CCAGUUCGGA 2941 C-UGGGGUC- (UGCAAC-C- C)-GACCCCA -CGAAGC-UG -GAUU-CGC- -UAGUA-AUC 3001 GC-GCA-(UC -AGCCAU)-G GCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-AAG--- --CCA-UGAA A--GC-CGG- GG-GU-GCCU -GAA-G-UCC 3121 G-U------- -GA-CC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGA------ U-CG-GC-CU A-GGGC-AAA ACU-GG-UG- AU........ 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Prv.verora 4376 bp RNA RNA 02-JUL-1998 DEFINITION Prevotella veroralis. ACCESSION No information KEYWORDS No information. SOURCE Prevotella veroralis. ORGANISM Prevotella veroralis. REFERENCE 1 AUTHORS Paster,B.J., Dewhirst,F.E., Olsen,I. and Fraser,G.J. TITLE Phylogeny of Bacteroides, Prevotella, and Porphyromonas spp. and related bacteria JOURNAL J. Bacteriol. 176, 725-732 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: L16473 biol_source= human oral cavity BASE COUNT 372 a 335 c 452 g 315 t 2902 others ORIGIN 1 .......... .......... .......... ..UACAAUGG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAU -NAAC-GC-- UAGC-UAC-A -GGC-UU--A ACAC-AUGCA A-GUC-GAGG 121 G--GA-AA-C GG-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- CAUUGAG-UG (--CU----- ---------- ---------- 241 --------UG -)CA-CUCUA UG-------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- ACG|-UC--G ACCG-GCGC- 361 -A-CG-GG-U GAGU---AAC -GC-GUAUC- CAA--CCU-U C-CCAU---A -ACUA-A-GG 421 -GAU-AA-CC U--------- ------GC-- C(-GAAA-)G -GCAG-A--C UAAUACC-UU 481 AU-GUA---- ---------- -------A-U UC-U--U-AG ---AUG-(-- --------AC 541 AU-------- -)-CAG---A AG-AG----A AU--CAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--GUU---- 661 ----AUGG-- AUG---G-|G GAUGC----- -GU|----CU G--AUUA-G- CUU-G---UU 721 GG-CG-GG-( GU-AAC-AG) -C-CCACC-A A|-GGC-GA- CGA------- -----UC-AG 781 U-AG-G-GG| -U-UCU--(G -AGA)-GGAA ----GG-U-- CCC-C|C-AC -AUUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -NAA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 AGG-AAUAUU G-GUCAAU-- GG-GC-(GAG A)-GCC-UGA ACCA|-GCCA AGUA-GC-GU 961 G-C-AG-G-A A-GAC--G-G CC(C-UA-U- -G)GG-UUGU AAA--CUGC| NUUU-GU-AU 1021 --GG-GGA-- UA-AAGU-CA --AUC-A--( -----CGUG- ---------) --UG-AU-UG 1081 ---------- -------U-U U-GC-AGGU- A-CCA-U-AC G-AA--UAAG ---------G 1141 -ACCGGCU-N AUUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAA |-GGUU-C-- 1201 GGG-CGUUAU CC-GGAUUUA -UU-GGGU|U UAAA-GGGA- GCG-UAG-GC -C|-GG-AG- 1261 A-UU-AAG|U GUG---UUGU G-AAA-UG-U AG-ACG-C(- UC-A)A-CGU -CU-G-ACU- 1321 -UGCA-GCGC A-UAC-UGGU U-UCCUU-GA GUA-----CG C-AC-AACGU UGG-C|GGAA 1381 UU-CGUCGU- GUA-GCG(-G UGAAA)-UGC -UU-AGAU-A UG-ACGAAG- AACU-CCGA- 1441 -U-U-GC(-G AA-G)GCAG- -CUGACGG-- ---------- ---------- ---------G 1501 AGC--GC-AA CUGACG-CUU AA-G------ -------CU- C-GAAG-GU- GC-GGG-UA- 1561 UC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CGC- A-CA-GU--A 1621 AAC-G-AUGG A--UG-CC-- -------C|G -CU-GU-UGG -UA------- ---------- 1681 -(CCU-GG)- ---------- ---------- ---------- ---------U -AUCAG-CGG 1741 CU--AA---- --GC-(GAA- ---A)G-CA- UUAA-GCAUC C|C|A-CCU- G-GGGAGUAC 1801 GCC-G---(G CAA)---C-G GU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGAGG-AAC A-U-GU-GGU -UUAAUU-CG -(AUGAUA-C G)--CGAGGA 1921 A-CCUUA-CC CGG-GC-UUG AAU-UG|--- -------C-A ---GAGG--- -AA----GGA 1981 -UUU-A--(- GAGA-)-UAA -U-GACG--- ---------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- -----G---| UCU-CU-GUG |---A|A--G 2161 GU-GC-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GC-C(-GUG A)-GGUGU-C 2221 GG-C-(UUAA -GU)-GCCAU AA-------- CGAG-C--GC AACCC-CU-C |-UC--UUC- 2281 AG--UUGC-C AU-CAG---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CUG|G 2701 G-CA-CU-C- U-GGA-GA-C A-CU-G-CCA --CC(-G--U AA)-GGU-GU -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AG CAC-G-GC-C CUUAC-G-UC -CG--GGGC- 2821 U-ACA-CA-C GUG--UUACA AUGGC-C-GG -UA--CAGAG GGA-C-G-G- UG-UAA-U(G 2881 -CAA)AUUG- ---------- CA-UCCAA-U CUUG--AAAG -CC-G-GUC- CCAGUUCGGA 2941 C-UGGGGUC- (UGCAAC-C- C)-GACCCCA -CGAAGC-UG -GAUU-CGC- -UAGUA-AUC 3001 GC-GCA-(UC -AGCCAU)-G GCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-AAG--- --CCA-UGAA A--GC-CGG- GG-GU-GCCU -GAA-G-UCC 3121 G-U------- -GA-CC---- ---------- ---------- -----(---- -GGAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGA------ U-CG-GC-CU A-GGGC-AAA ACU-GG-UG- AUU-GGGG.. 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Prv.denti2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Prevotella denticola. ACCESSION No information KEYWORDS No information. SOURCE Prevotella denticola. ORGANISM Prevotella denticola. REFERENCE 1 AUTHORS Paster,B.J., Dewhirst,F.E., Olsen,I. and Fraser,G.J. TITLE Phylogeny of Bacteroides, Prevotella, and Porphyromonas spp. and related bacteria JOURNAL J. Bacteriol. 176, 725-732 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: L16466 ATCC 33185 = VPI 10043 biol_source= maxillary atrium BASE COUNT 337 a 368 c 477 g 277 t 2917 others ORIGIN 1 .......... .......... .......... ..UNCNGUGG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAU -NAAC-GC-- UGGC-UAC-A -GGC-UU--A ACAC-AUGCA A-GUC-GAGG 121 G--GA-AA-C GG-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- CAUUGAG-UG (--CU----- ---------- ---------- 241 --------UG -)CA-CUCAA UG-------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- ACG|-UC--G ACCG-GCGC- 361 -A-CG-GG-U GAGU---AAC -GC-GUAUC- CAA--CCU-U C-CCGU---U -ACUG-C-GG 421 -GAU-AA-CC U--------- ------GC-- C(-GAAA-)G -GCNG-A--C UAAUACC-GC 481 AU-GUU---- ---------- -------C-U UC-G--A-UG ---ACG-(-- --------GC 541 AU-------- -)-CAG---A UU-CG----A AG--CAAA-- ---GA----- ---------- 601 --(------- ---UCCG--- ---)------ ---------| -----U--C- G--GUA---- 661 ----ACGG-- AGG---G-|G GAUGC----- -GU|----CU G--AUUA-G- CUA-G---UU 721 GG-CG-GG-( GC-GAC-GG) -C-CCACC-A A|-GGC-GA- CGA------- -----UC-AG 781 U-AG-G-GG| -U-UCU--(G -AGA)-GGAA ----GG-U-- CCC-C|C-AC -AUUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AAA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 AGG-AAUAUU G-GUCAAU-- GG-GC-(GGA A)-GCC-UGA ACCA|-GCCA AGUA-GC-GU 961 G-C-AG-G-A U-GAC--G-G CC(C-UA-U- -G)GG-UUGU AAA--CUGC| UUUU-AU-GC 1021 --GG-GGA-- UA-AAGU-GA --GGG-A--( -----CG... ......---) .......... 1081 ---------- -------U-U U-GC-AGGU- A-CCG-C-AU G-AA--UAAG ---------G 1141 -ACCGGCU-N AUUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAA |-GGUC-C-- 1201 NGG-CGUUAU CC-GGAUUUA -UU-GGGU|U UAAA-GGGA- GCG-UAG-GC -C|-GG-GG- 1261 A-UU-AAG|U GUG---UUGU G-AAA-UG-U AG-GCG-C(- CC-A)A-CGU -CU-G-ACU- 1321 -UGCA-GCGC A-UAC-UGGU U-CCCUU-GA GUA-----CG C-GC-AACGC CGG-C|GGAA 1381 UU-CGUCGU- GUA-GCG(-G UGAAA)-UGC -UU-AGAU-A UG-ACGAAG- AACC-CCGA- 1441 -U-U-GC(-G AA-G)GCAG- -CCGGCGG-- ---------- ---------- ---------G 1501 AGC--GC-AA CUGACG-CUN AA-G------ -------CU- N-AAAG-GU- GC-GGG-UA- 1561 UC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CGC- A-CG-GU--N 1621 AAC-G-AUGG A--UG-CC-- -------C|G -CU-GC-UGG -UG------- ---------- 1681 -(CCU-UG)- ---------- ---------- ---------- ---------C -GCCAG-CGG 1741 CC--AA---- --GC-(GAA- ---A)G-CG- UUAA-GCAUC C|C|A-CCU- G-GGGAGUAC 1801 GCC-G---(G CAA)---C-G GU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGAGG-AAC A-U-GU-GGU -UUAAUU-CG -(AUGAUA-C G)--CGAGGA 1921 A-CCUUA-CC CGG-GN-UUG AAU-CG|--- -------C-A ---GGAG--- -AA----CGA 1981 -UAC-A--(- GAGA-)-UGU -U-GAGG--- U--------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- -----A---| CUC-CU-GCG |---A|A--G 2161 GU-GC-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GC-C(-GUG A)-GGUGU-C 2221 GG-C-(UUAA -GU)-GCCAU AA-------- CGAG-C--GC AACCC-CU-C |-UC--CCC- 2281 AG--UUGC-C AU-CGG---- ---------- ---------- ---G(---UG ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CCG|G 2701 G-CA-CU-C- C-GGG-GN-C A-CU-G-CCG --CC(-G--C AA)-GGU-GC -GAGG-A-AG 2761 G-CG-GGG-A UG-ACG--UC -A-AAUC-AG CAC-G-GC-C CUUAC-G-UC -CG--GGGC- 2821 U-ACA-CA-C GUG--UUACA AUGGC-C-GG -CA--CAGAG UGC-N-G-G- GU-GGG-C(G 2881 -CGA)GCCG- ---------- CA-UCCAA-U CUUG--AAAA -CC-G-GUC- UCAGUUCGGA 2941 C-UGGGGUC- (UGCAAC-C- C)-GACCCCA -CGAAGC-UG -GAUU-CGC- -UAGUA-AUC 3001 GC-GCA-(UC -AGCCAC)-G GCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-AAG--- --CCA-UGAA A--GC-CGG- GG-GU-GCCU -GAA-G-UCC 3121 G-U------- -GA-CC---- ---------- ---------- -----(---- -GCGA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGA------ U-CG-GC-CU A-GGGC-AAA ACU-GG-UG- AUU-GGGG.. 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Prv.dentic 4376 bp RNA RNA 02-JUL-1998 DEFINITION Prevotella denticola str. 1210 ATCC 35308 (T). ACCESSION No information KEYWORDS No information. SOURCE Prevotella denticola str. 1210 ATCC 35308 (T). ORGANISM Prevotella denticola. REFERENCE 1 AUTHORS Paster,B.J., Dewhirst,F.E., Olsen,I. and Fraser,G.J. TITLE Phylogeny of Bacteroides, Prevotella, and Porphyromonas spp. and related bacteria JOURNAL J. Bacteriol. 176, 725-732 (1994) STANDARD No information COMMENTS Organism information Culture collection: ATCC 35308 (T) Sequence information (bases 1 to 4376) Corresponding GenBank entry: L16467 ATCC 35308 (T) = NCDO 2352 biol_source= dental plaque isolate_name= 1210 BASE COUNT 341 a 367 c 463 g 275 t 2930 others ORIGIN 1 .......... .......... .......... ..UACAGUGG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAU -NAAC-GC-- UGGC-UAC-A -GGC-UU--A ACAC-AUGCN A-GUC-GAGG 121 G--GA-AA-C GG-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- CAUUGAG-UG (--CU----- ---------- ---------- 241 --------UG -)CA-CUNAA UG-------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- ACG|-UC--G ACCG-GCGC- 361 -A-CG-GG-U GAGU---AAC -GC-GUAUC- CAA--CCU-U C-CCGU---U -ACUG-C-GG 421 -GAU-AA-CC U--------- ------GC-- C(-GAAA-)G -GCAG-A--C UAAUACC-GC 481 AU-GUU---- ---------- -------C-U UC-G--A-UG ---ACG-(-- --------GC 541 AU-------- -)-CAG---A UU-NG----A AG--CAAA-- ---GA----- ---------- 601 --(------- ---UCCR--- ---)------ ---------| -----U--C- G--GUA---- 661 ----ACGG-- AGG---G-|G GAUGC----- -GU|----CU G--AUUA-G- CUA-G---UU 721 GG-CG-GG-( GC-GAC-GG) -C-CCACC-A A|-GGC-GA- CGA------- -----UC-AG 781 U-AG-G-GG| -U-UCU--(G -AGA)-GGAA ----GG-U-- CCC-C|C-AC -AUUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AAA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 AGG-AAUAUU G-GUCAAU-- GG-GC-(GGA A)-GCC-UNA ACCA|-GCCA AGUA-GC-GU 961 G-C-AG-G-A U-GAC--G-G CC(C-UA-C- -G)GG-UUGU AAA--CUGC| UUUU-AU-GC 1021 --GG-GGA-- UA-AAGU-GA --GGN-A--( -----CGNN- ---------) --NC-CN-NN 1081 ---------- -------U-U U-GC-AGGU- A-CCG-C-AU G-AA--UAAG ---------G 1141 -ACCGGCU-A AUUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAA |-GGUC-C-- 1201 NGG-CGUUAU CC-GGAUUUA -UU-GGGU|U UAAA-GGGA- GCG-UAG-GC -C|-GG-GG- 1261 A-UU-AAG|U GUG---UUGU G-AAA-UG-U AG-GCG-C(- CC-A)A-CGU -CU-G-ACU- 1321 -UGCA-GCGC A-UAC-UGGU U-CCCUU-GA GUA-----CG C-GC-AACGC CGG-C|GGAA 1381 UU-CGUCGU- GUA-GCG(-G UGAAA)-UGC -UU-AGAU-A UG-ACGAAG- AACC-CCNA- 1441 -U-U-GC(-G AA-G)GCAG- -CCGGCGG-- ---------- ---------- ---------G 1501 AGC--GC-AA CUGACG-CUG AA-G------ -------CU- N-NAAG-GU- GC-GGG-UA- 1561 UC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CGC- A-CG-GU--A 1621 AAC-G-AUGG A--UG-CC-- -------C|G -CU-GC-UGG -UG------- ---------- 1681 -(CCN-UG)- ---------- ---------- ---------- ---------C -GCCAG-CGG 1741 CC--AA---- --GC-(GAA- ---A)G-CG- UUAA-GCAUC C|N|A-CCU- G-GGGAGUAC 1801 GCC-G---(G CAA)---C-G GU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGAGG-AAC A-U-GU-GGU -UUAAUU-CG -(AUGAUA-C G)--CGAGGA 1921 A-CCUUA-CC CGG-GC-UUG AAU-UG|--- -------C-A ---GGAG--- -AA----CGA 1981 -UAC-A--(- GAGA-)-UGU -U-GAGG--- U--------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- -----A---| CUC-CU-GCG |---A|A--G 2161 GU-GC-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GC-C(-GUG A)-GGUGU-C 2221 GG-C-(UNAA -GU)-GCCAU AA-------- CGAG-C--GC AACCC-CU-C |-UC--CCC- 2281 AG--UUGC-C AU-CGG---- ---------- ---------- ---G(---UG ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CCG|G 2701 G-CA-CU-C- C-GGG-GA-C A-CU-G-CCG --CC(-G--C AA)-GGU-GC -GAGG-A-AG 2761 G-CG-GGG-A UG-ACG--UC -A-AAUC-AG CAC-N-GC-C CUUAC-G-UC -CG--GGGC- 2821 U-ACA-CA-C GUG--UUACA AUGGC-C-GG -CA--CAGAG UAC-N-N-N- GU-NGG-C(G 2881 -CGA)GCCG- ---------- CA-UCUAA-U CUUG--AAAA -CC-G-GUC- UCAGUUCGGA 2941 C-UGGGGUC- (UGCAAC-C- C)-GACCCCA -CGAAGC-UG -GAUU-CGC- -UAGUA-AUC 3001 GC-GCA-(UC -AGCCAC)-G GCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-AAG--- --CCA-UGAA A--GC-CGG- GG-GU-GCCU -NAA-G-UCC 3121 G-U------- -GA-CC---- ---------- ---------- -----(---- -GCGA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGA------ U-CG-GC-CU A-GGGC-NAA ACU-GG-UN- AU........ 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Prv.corpor 4376 bp RNA RNA 02-JUL-1998 DEFINITION Prevotella corporis. ACCESSION No information KEYWORDS No information. SOURCE Prevotella corporis. ORGANISM Prevotella corporis. REFERENCE 1 AUTHORS Paster,B.J., Dewhirst,F.E., Olsen,I. and Fraser,G.J. TITLE Phylogeny of Bacteroides, Prevotella, and Porphyromonas spp. and related bacteria JOURNAL J. Bacteriol. 176, 725-732 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: L16465 biol_source= cervical swab BASE COUNT 357 a 343 c 454 g 311 t 2911 others ORIGIN 1 .......... .......... .......... ..UACAAUGG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAU -NAAC-GC-- UAGC-UAC-A -GGC-UU--A ACAC-AUGCA A-GUC-GAGG 121 G--GA-AA-C GG-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- CAUUAAG-UG (--CU----- ---------- ---------- 241 --------UG -)CA-CUUUU UG-------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- ACG|-UC--G ACCG-GCGC- 361 -A-CG-GG-U GAGU---AAC -GC-GUAUC- CAA--CCU-G C-CCCU---U -ACCA-G-GG 421 -AAU-AA-CC C--------- ------GU-- U(-GAAA-)G -ACGG-A--C UAAUGCC-CU 481 AU-GGA---- ---------- -------G-U CC-U--U-UG ---ACG-(-- --------GC 541 AU-------- -)-CAG---A UU-AG----G AC--UAAA-- ---GA----- ---------- 601 --(------- ---UUCA--- ---)------ ---------| -----U--C- G--GUA---- 661 ----UGGG-- AUG---G-|G GAUGC----- -GU|----CU G--AUUA-G- CUU-G---UU 721 GG-CG-GG-( GU-AAC-GG) -C-CCACC-A A|-GGC-AU- CGA------- -----UC-AG 781 U-AG-G-GG| -U-UCU--(G -AGA)-GGAA ----GG-U-- CCC-C|C-AC -AUAGG-A-A 841 (CUGA-GA-C ACG)--GUCC -UAA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 AGG-AAUAUU G-GUCAAU-- GG-GC-(GCU A)-GCC-UGA ACCA|-GCCA AGUA-GC-GU 961 G-C-AG-G-A U-GAC--G-G CC(C-UA-U- -G)GG-UUGU AAA--CUNC| UUUU-AU-GC 1021 --GG-GGA-- UA-AAGU-CA --CCC-A--( -----CGUG- ---------) --UG-GG-UN 1081 ---------- -------U-U U-GC-AGGU- A-CCG-C-AU G-AA--UAAG ---------G 1141 -ACCGGCU-A AUUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAA |-GGUC-C-- 1201 GGG-CGUUAU CC-GGAUUUA -UU-GGGU|U UAAA-GGGA- GUG-UAG-GC -G|-GC-CU- 1261 G-UU-AAG|C GUG---UUGU G-AAA-UG-U AG-AUG-C(- UC-A)A-CAU -CU-G-AAC- 1321 -UGCA-GCGC G-AAC-UGGC U-GGCUU-GA GUA-----CA C-GC-AACGU GGG-C|GGAA 1381 UU-CAUGGU- GUA-GCG(-G UGAAA)-UGC -UU-AGAU-A UC-AUGAGG- AACU-CCUA- 1441 -U-U-GC(-G AA-G)GCAG- -CUCACGG-- ---------- ---------- ---------G 1501 AGU--GU-CA CUGACG-CUU AA-G------ -------CU- C-GAAG-GU- GC-GGG-UA- 1561 UC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CGC- A-CG-GU--A 1621 AAC-G-AUGG A--UG-CC-- -------C|G -CU-GU-UGG -CG------- ---------- 1681 -(CUU-UG)- ---------- ---------- ---------- ---------C -GUCAG-CGG 1741 CU--AA---- --GC-(GAA- ---A)G-CA- UUAA-GCAUC C|N|A-CCU- G-GGGAGUAC 1801 GCC-G---(G CAA)---C-G GU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGAGG-AAC A-U-GU-GGU -UUAAUU-CG -(AUGAUA-C G)--CGAGGA 1921 A-CCUUA-CC CGG-GC-UUG AAU-UG|--- -------C-A ---GAGG--- -AA----AGA 1981 -UCC-A--(- GAGA-)-UGG -U-GAUN--- C--------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- -----G---| UCU-CU-GUG |---A|A--G 2161 GU-GC-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GC-C(-GUG A)-GGUGU-C 2221 GG-C-(UUAA -GU)-GCCAU AA-------- CGAG-C--GC AACCC-CN-N |-UU--UCC- 2281 GG--UUGC-C AU-CAG---- ---------- ---------- ---G(---UG ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CUG|G 2701 G-CA-CU-C- C-GGG-GA-C A-CU-G-CCA --CC(-G--U AA)-GGU-GU -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AG CAC-G-GC-C CUUAC-G-UC -CG--GGGC- 2821 U-ACA-CA-C GUG--UUACA AUGGC-C-GG -UA--CAGAG GGC-A-G-G- UG-CAA-U(G 2881 -CAA)AUUG- ---------- CA-UCAAA-U CUAU--AAAU -CC-G-GUC- UCAGUUCGGA 2941 C-UGGGGUC- (UGCAAC-C- C)-GACCCCA -CGAAGC-UG -GAUU-CGC- -UAGUA-AUC 3001 GC-GCA-(UC -AGCCAU)-G GCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-AAG--- --CCA-UGAA A--GC-NGG- GG-GU-GCCU -GAA-G-UUC 3121 G-U------- -AA-CC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGA------ G-CG-AC-CU A-GGGC-AAA ACU-GG-UG- A......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Prv.disien 4376 bp RNA RNA 02-JUL-1998 DEFINITION Prevotella disiens. ACCESSION No information KEYWORDS No information. SOURCE Prevotella disiens. ORGANISM Prevotella disiens. REFERENCE 1 AUTHORS Paster,B.J., Dewhirst,F.E., Olsen,I. and Fraser,G.J. TITLE Phylogeny of Bacteroides, Prevotella, and Porphyromonas spp. and related bacteria JOURNAL J. Bacteriol. 176, 725-732 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: L16483 biol_source= urogenital tract BASE COUNT 376 a 324 c 437 g 339 t 2900 others ORIGIN 1 .......... .......... .......... ..UACAAUGG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAU -GAAC-GC-- UAGC-UAU-A -GGC-UU--A ACAC-AUGCA A-GUC-GAGG 121 G--GA-AC-G GC-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -AAAGAG-UG (--CU----- ---------- ---------- 241 --------UG -)CA-CACUU U--------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- GAC|-GU--G ACCG-GCGC- 361 -A-CG-GG-U GAGU---AAC -GC-GUAUC- CAA--CCU-G C-CCUU---U -ACUU-G-GG 421 -GAU-AA-CC C--------- ------GU-- U(-GAAA-)G -ACGG-A--C UAAUACC-CA 481 AU-GAU---- ---------- -------A-U UC-A--U-UG ---AUG-(-- --------AC 541 AU-------- -)-CUC---A UU-UG----A AU--UAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--GUA---- 661 ----UAGG-- AUG---G-|G GAUGC----- -GU|----CU G--AUUA-G- CUU-G---UU 721 GG-UG-AG-( GU-AAC-GG) -C-UCACC-A A|-GGC-AA- CGA------- -----UC-AG 781 U-AG-G-GG| -U-UCU--(G -AGA)-GGAA ----GG-U-- CCC-C|C-AC -AUUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AAA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 AGG-AAUAUU G-GUCAAU-- GG-AC-(GAG A)-GUC-UGA ACCA|-GCCA AGUA-GC-GU 961 G-C-AG-G-A U-GAC--G-G CC(C-UA-U- -G)GG-UUGU AAA--CUGC| NUUU-GU-UU 1021 --GG-GNA-- UA-AUCG-AC --AUU-A--( -----CGUG- ---------) --UA-AUGUC 1081 ---------- -------U-U U-GC-AUGU- A-CCA-U-UC G-AA--UAAG ---------G 1141 -ACCGGCU-N AUUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAA |-GGUC-C-- 1201 AGG-CGUUAU CC-GGAUUUA -UU-GGGU|U UAAA-GGGA- GUG-UAG-GC -G|-GU-UG- 1261 G-UU-AAG|C GUG---UUGU G-AAA-UG-U AG-AUG-C(- UC-A)A-CAU -CU-G-ACU- 1321 -UGCA-GCGC G-AAC-UGGC U-GACUU-GA GUA-----CA C-AC-AACGU AGG-C|GGAA 1381 UU-CAUGGU- GUA-GCG(-G UGAAA)-UGC -UU-AGAU-A UC-AUGAAG- AACU-CCGA- 1441 -U-U-GC(-G AA-G)GCAG- -CUUACGG-- ---------- ---------- ---------G 1501 AGU--GU-UA CUGACG-CUU AA-G------ -------CU- C-GAAG-GU- GC-GGG-UA- 1561 UC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CGC- A-CA-GU--A 1621 AAC-G-AUGG A--UG-CC-- -------C|G -CU-GU-UAG -CA------- ---------- 1681 -(CCU-GG)- ---------- ---------- ---------- ---------U -GUUAG-CGG 1741 CU--AA---- --GC-(GAA- ---A)G-CA- UUAA-GCAUC C|C|A-CCU- G-GGGAGUAC 1801 GCC-G---(G CAA)---C-G GU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGAGG-AAC A-U-GU-GGU -UUAAUU-CG -(AUGAUA-C G)--CGAGGA 1921 A-CCUUA-CC CGG-GC-UUG AAU-UG|--- -------U-A ---GGAG--- -CA----CGA 1981 -UAC-A--(- GAGA-)-UGU -U-GAGG--- U--------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- -----A---| CUC-CU-AUG |---A|A--G 2161 GU-GC-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GC-C(-GUG A)-GGUGU-C 2221 GG-C-(UUAA -GU)-GCCAU AA-------- CGAG-C--GC AACCC-CU-A |-UC--CUU- 2281 AG--UUGC-C AU-CAG---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CUG|G 2701 G-CA-CU-C- U-GAG-GA-U A-CU-G-CCA --CC(-G--U AA)-GGU-GU -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AG CAC-G-GC-C CUUAC-G-UC -CG--GGGC- 2821 U-ACA-CA-C GUG--UUACA AUGGC-C-GG -UA--CAGAA UGU-U-G-G- UU-UCA-U(G 2881 -UAA)AUGU- ---------- AA-UCUAA-U CUUU--AAAG -CC-G-GUC- CCAGUUCGGA 2941 C-UGAGGUC- (UGCAAC-C- C)-GACCUCA -CGAAGC-UG -GAUU-CGC- -UAGUA-AUC 3001 GC-GCA-(UC -AGCCAU)-G GCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-AAG--- --CCA-UGAA A--GC-CGG- GG-GU-GCCU -GAA-G-UUC 3121 G-U------- -AA-CC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGA------ G-CG-AC-CU A-GGGC-AAA ACU-GG-UA- AUU-GGGG-C 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Prv.interm 4376 bp RNA RNA 02-JUL-1998 DEFINITION Prevotella intermedia str. B422 (S.Finegold) ATCC 25611 (T). ACCESSION No information KEYWORDS No information. SOURCE Prevotella intermedia str. B422 (S.Finegold) ATCC 25611 (T). ORGANISM Prevotella intermedia. REFERENCE 1 AUTHORS Paster,B.J., Dewhirst,F.E., Olsen,I. and Fraser,G.J. TITLE Phylogeny of Bacteroides, Prevotella, and Porphyromonas spp. and related bacteria JOURNAL J. Bacteriol. 176, 725-732 (1994) STANDARD No information COMMENTS Organism information Culture collection: ATCC 25611 (T) Sequence information (bases 1 to 4376) Corresponding GenBank entry: L16468 ATCC 25611 (T) = JCM 7365 = VPI 4197 biol_source= empyema isolate_name= B422 (S.Finegold) BASE COUNT 346 a 347 c 451 g 316 t 2916 others ORIGIN 1 .......... .......... .......... ..UACAAUGG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAU -NAAC-GC-- UAGC-UAU-A -GGC-UU--A ACAC-AUGCA A-GUC-GAGG 121 G--GA-AA-C GG-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- CAUUAUG-UG (--CU----- ---------- ---------- 241 --------UG -)CA-CAUUC UG-------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- ACG|-UC--G ACCG-GCGC- 361 -A-CG-GG-U GAGU---AUC -GC-GNAUC- CAA--CCU-U C-CCUC---C -ACUC-G-GG 421 -GAU-AC-CC C--------- ------GU-- U(-GAAA-)G -ACGG-C--C UAAUACC-CG 481 AU-GUU---- ---------- -------G-U CC-A--C-AU ---AUG-(-- --------GC 541 AU-------- -)-CUG---A CG-UG----G AC--CAAA-- ---GA----- ---------- 601 --(------- ---UUCA--- ---)------ ---------| -----U--C- G--GUG---- 661 ----GAGG-- AUG---G-|G GAUGC----- -GU|----CU G--AUUA-G- CUU-G---UU 721 GG-UGCGG-( GU-AAC-GG) -C-CCACC-A A|-GGC-UN- CGA------- -----UC-AG 781 U-AG-G-GG| -U-UCU--(G -AGA)-GGAA ----GG-U-- CCC-C|C-AC -AUUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -NAA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 AGG-AAUAUU G-GUCAAU-- GG-AC-(GUA A)-GUC-UGA ACCA|-GCCA AGUA-GC-GU 961 G-C-AG-A-U U-GAC--G-G CC(C-UA-U- -G)GG-UUGU AAA--CUGC| UUUU-GU-UG 1021 --GG-GAG-- UA-AAGC-G- --GGC-A--( -----CGUG- ---------) --UG-CC-NN 1081 ---------- -------N-U U-GC-AUUU- A-CCC-U-UC G-AA--UAAG ---------G 1141 -ACCGGCU-N AUUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAA |-GGUC-C-- 1201 AGG-CGUUAU CC-GGAUUUA -UU-GGGU|U UAAA-GGGA- GUG-UAG-GC -G|-GU-CU- 1261 G-UU-AAG|C GUG---UUGU G-AAA-UU-U AG-GUG-C(- UC-A)A-CAU -CU-A-CCU- 1321 -UGCA-GCGC G-AAC-UGGC G-GACUU-GA GUG-----CA C-GC-AACGU AUG-C|GGAA 1381 UU-CAUGGU- GUA-GCG(-G UGAAA)-UGC -UU-AGAU-A UC-AUGACG- AACU-CCGA- 1441 -U-U-GC(-G AA-G)GCAG- -CGUACGG-- ---------- ---------- ---------G 1501 AGU--GU-UA CUGACG-CUU AA-G------ -------CU- C-GAAG-GU- GC-GGG-UA- 1561 UC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CGC- A-CG-GU--A 1621 AAC-G-AUGG A--UG-CC-- -------C|G -CU-GU-UAG -CG------- ---------- 1681 -(CCU-NG)- ---------- ---------- ---------- ---------C -GCUAG-CGG 1741 CU--AA---- --GC-(GAA- ---A)G-CA- UUAA-GCAUC C|C|A-CCU- G-GGGAGUAC 1801 GCC-G---(G CAA)---C-G GU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGAGG-AAC A-U-GU-GGU -UUAAUU-CG -(AUGAUA-C G)--CGAGGA 1921 A-CCUUA-CC CGG-GC-UUG AAU-UG|--- -------C-A ---GACG--- -CA----GGA 1981 -UAC-A--(- GAGA-)-UGU -U-GACU--- ---------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- -----G---| CGU-CU-GUG |---A|A--G 2161 GU-GC-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GC-C(-GUG A)-GGUGU-C 2221 GG-C-(UUAA -GU)-GCCAU AA-------- CGAG-C--GC AACCC-CU-A |-UC--CUU- 2281 AG--UUGC-C AU-NAG---- ---------- ---------- ---G(---UG ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CUG|G 2701 G-CA-CU-C- U-GGG-GA-Y A-CU-G-CCA --CC(-G--C AA)-GGU-GU -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AG CAC-G-GC-C CUUAC-G-UC -CG--GGGC- 2821 U-ACA-CA-C GUG--UUACA AUGGC-C-GG -UA--CAGAG GGA-C-G-G- UG-URA-U(G 2881 -CAA)AUMG- ---------- CA-UCCAA-U CUUG--AAAG -CC-G-GUC- CCAGUUCGGA 2941 C-UGAGGUC- (UGCAAC-C- C)-GACCUCA -CGAAGC-UG -GAUU-CGC- -UAGUA-AUC 3001 GC-GCA-(UC -AGCCAU)-G GCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-AAG--- --CCA-UGAA A--GC-CGG- GG-GU-GCCU -GAA-G-UUC 3121 G-U------- -AA-CC---- ---------- ---------- -----(---- -GCGA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGA------ G-CG-AC-CU A-GGGC-AAA ACU-GG-UG- AU........ 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Prv.inter2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Prevotella intermedia str. B422 (S.Finegold) ATCC 25611 (T). ACCESSION No information KEYWORDS No information. SOURCE Prevotella intermedia str. B422 (S.Finegold) ATCC 25611 (T). ORGANISM Prevotella intermedia. REFERENCE 1 AUTHORS Gersdorf,H., Preisler,S., Choi,B.K. and Goebel,U. JOURNAL Unpublished (1994) STANDARD No information COMMENTS Organism information Culture collection: ATCC 25611 (T) Sequence information (bases 1 to 4376) Corresponding GenBank entry: X73965|g509129 ATCC 25611 (T) = JCM 7365 = VPI 4197 biol_source= empyema isolate_name= B422 (S.Finegold) BASE COUNT 344 a 347 c 450 g 314 t 2921 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .AGC-UAU-A -GGC-UU--A ACAC-AUGCA A-GUCCGAGG 121 G--GA-AA-C GG-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- CAUUAUG-UG (--CU----- ---------- ---------- 241 --------UG -)CA-CAUUC UG-------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- ACG|-UC--G ACCG-GCGC- 361 -A-CG-GG-U GAGU---AUC -GC-GUAUC- CAA--CCU-U C-CCUC---C -ACUC-G-GG 421 -GAU-AC-CC C--------- ------GU-- U(-GAAA-)G -ACGG-C--C UAAUACC-CG 481 AU-GUU---- ---------- -------G-U CC-A--C-AU ---AUG-(-- --------GC 541 AU-------- -)-CUG---A CG-UG----G AC--CAAA-- ---GA----- ---------- 601 --(------- ---UUCA--- ---)------ ---------| -----U--C- G--GUG---- 661 ----GAGG-- AUG---G-|G GAUGC----- -GU|----CU G--AUUA-G- CUU-G---UU 721 GG-UGCGG-( GU-AAC-GG) -C-CCACC-A A|-GGC-UA- CGA------- -----UC-AG 781 U-AG-G-GG| -U-UCU--(G -AGA)-GGAA ----GG-U-- CCC-C|C-AC -AUUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AAA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 AGG-AAUAUU G-GUCAAU-- GG-AC-(GUA A)-GUC-UGA ACCA|-GCCA AGUA-GC-GU 961 G-C-AGGA-U U-GAC--G-G CC(C-UA-U- -G)GG-UUGU AAA--CUGC| UUUU-GU-UG 1021 --GG-GAG-- UA-AAGC-GG --GGC-A--( -----CGUG- ---------) --UG-CC-CY 1081 ---------- -------U-U U-GC-AUUU- A-CCC-U-UC G-AA--UAAG ---------G 1141 -ACCGGCU-A AUUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAA |-GGUC-C-- 1201 AGG-CGUUAU CC-GGAUUUA -UU-GGGU|U UAAA-GGGA- GUG-UAG-GC -G|-GU-CU- 1261 G-UU-AAG|C GUG---UUGU G-AAA-UU-U AG-GUG-C(- UC-A)A-CAU -CU-A-CCU- 1321 -UGCA-GCGC G-AAC-UGGC G-GACUU-GA GUG-----CA C-GC-AACGU AUG-C|GGAA 1381 UU-CAUGGU- GUA-GCG(-G UGAAA)-UGC -UU-AGAU-A UC-AUGACG- AACU-CCGA- 1441 -U-U-GC(-G AA-G)GCAG- -CGUACGG-- ---------- ---------- ---------G 1501 AGU--GU-UA CUGACG-CUU AA-G------ -------CU- C-GAAG-GU- GC-GGG-UA- 1561 UC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CGC- A-CG-GU--A 1621 AAC-G-AUGG A--UG-CC-- -------C|G -CU-GU-UAG -CG------- ---------- 1681 -(CCU-GG)- ---------- ---------- ---------- ---------C -GUUAG-CGG 1741 CU--AA---- --GC-(GAA- ---A)G-CA- UUAA-GCAUC C|C|A-CCU- G-GGGAGUAC 1801 GCC-G---(G CAA)---C-G GU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGAGG-AAC A-U-GU-GGU -UUAAUU-CG -(AUGAUA-C G)--CGAGGA 1921 A-CCUUA-CC CGG-GC-UUG AAU-UG|--- -------C-A ---GACG--- -CA----GGA 1981 -UAC-A--(- GAGA-)-UGU -U-GACU--- C--------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- -----G---| CGU-CU-GUG |---A|A--G 2161 GU-GC-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GC-C(-GUG A)-GGUGU-C 2221 GG-C-(UUAA -GU)-GCCAU AA-------- CGAG-C--GC AACCC-CU-U |-UC--CUU- 2281 AG--UUGC-C AU-CAG---- ---------- ---------- ---G(---UC ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CUG|G 2701 G-CA-CU-C- U-GGG-GA-C A-CU-G-CCA --CC(-G--C AA)-GGU-GU -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AG CAC-G-GC-C CUUAC-G-UC -CG--GGGC- 2821 U-ACA-CA-C GUG--UUACA AUGGC-C-GG -UA--CAGAG GGA-C-G-G- UG-UGA-U(G 2881 -YAA)AUCG- ---------- CA-UCCAA-U CUUG--AAAG -CC-G-GUC- CCAGUUCGGA 2941 C-UGAGGUC- (UGCAAC-C- C)-GACCUCA -CGAAGC-UG -GAUU-CGC- -UAGUA-AUC 3001 GC-GCA-(UC -AGCCAU)-G GCG-CGGUG- AAUAC-GUU- CCS-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-AAG--- --CCA-UGAA A--GC-CGG- SG-GU-GCCU -GAA-G-UUC 3121 G-U------- -AA-CC---- ---------- ---------- -----(---- -GCGA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGA------ G-CG-AC-CU A-GGGC-AAA ACU-GG-UG- AUU-GGGG-C 3301 U---AAGUC- GUAA-CAAG. .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Prv.nigres 4376 bp RNA RNA 02-JUL-1998 DEFINITION Prevotella nigrescens str. Lambe 729-74 ATCC 33563 (T). ACCESSION No information KEYWORDS No information. SOURCE Prevotella nigrescens str. Lambe 729-74 ATCC 33563 (T). ORGANISM Prevotella nigrescens. REFERENCE 1 AUTHORS Paster,B.J., Dewhirst,F.E., Olsen,I. and Fraser,G.J. TITLE Phylogeny of Bacteroides, Prevotella, and Porphyromonas spp. and related bacteria JOURNAL J. Bacteriol. 176, 725-732 (1994) STANDARD No information COMMENTS Organism information Culture collection: ATCC 33563 (T) Sequence information (bases 1 to 4376) Corresponding GenBank entry: L16471 ATCC 33563 (T) = VPI 8944 = NCTC 9336 biol_source= dental plaque (gingivitis) isolate_name= Lambe 729-74 BASE COUNT 337 a 358 c 455 g 304 t 2922 others ORIGIN 1 .......... .......... .......... ...ACAAUGG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAU -NAAC-GC-- UGGC-UAC-A -GGC-UU--A ACAC-AUGCA A-GUC-GUGG 121 G--NN-AA-C GG-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- CAUUAUG-UG (--CU----- ---------- ---------- 241 --------UG -)CA-CAUUC UG-------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- ACG|-UU--G ACCG-GCGC- 361 -A-CG-GG-U GAGU---AUC -GC-GNAUC- CAA--CCU-G C-CCCN---U -ACUU-G-GG 421 -GAU-AC-CC C--------- ------GU-- U(-GAAA-)G -ACGG-C--C UNAUACC-CG 481 AU-GUG---- ---------- -------U-U UC-A--U-UG ---ACG-(-- --------GC 541 AU-------- -)-CCG---A UA-UG----A AA--CAAA-- ---GG----- ---------- 601 --(------- ---UUUU--- ---)------ ---------| -----C--C- G--GUA---- 661 ----AGGG-- AUG---G-|G GAUGC----- -GU|----CU G--AUUA-G- CUN-G---UU 721 GG-CG-GG-( GC-AAC-GG) -C-CCACC-A A|-GGC-GA- CGA------- -----UC-AG 781 U-AG-G-GG| -U-UCU--(G -AGA)-GGAA ----GG-U-- CCC-C|C-AC -AUUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -NAA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 AGG-AAUAUU G-GUCAAU-- GG-AC-(GCA A)-GUC-UGA ACCA|-GCCA AGUA-GC-GU 961 G-C-AG-G-A U-GAC--G-G CC(C-UA-U- -G)GG-UUGU AAA--CUNC| NUUU-AU-GU 1021 --GG-GAA-- UA-AAUU-G- ----C-A--( -----CGUG- ---------) --UG-CG-CN 1081 ---------- -------N-U U-GC-AUGU- A-CCU-C-AU G-AA--UAAG ---------G 1141 -ACCGGCU-N AUUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAA |-GGUC-C-- 1201 NGG-CGUUAU CC-GGAUUUA -UU-GGGU|U UAAA-GGGA- GUG-UAG-GC -G|-GU-CU- 1261 G-UU-AAG|C GUG---UUGU G-AAA-UU-U AG-GUG-C(- UC-A)A-CAU -UU-A-ACU- 1321 -UGCA-GCGC G-AAC-UGUC A-GACUU-GA GUA-----CA C-GC-AGCGC AGG-C|GGAA 1381 UU-CAUGGU- GUA-GCG(-G UGAAA)-UGC -UU-AGAU-A UC-AUGAGG- AACU-CCGA- 1441 -U-C-GC(-G AA-G)GCAG- -CCUGCGG-- ---------- ---------- ---------G 1501 AGU--GU-UA CUGACG-CUU AA-G------ -------CU- C-GAAG-GU- GC-GGG-UA- 1561 UC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CGC- A-CW-GU--A 1621 AAC-G-AUGG A--UG-CC-- -------C|G -CC-GU-UGG -C-------- ---------- 1681 -(-CC-U-)- ---------- ---------- ---------- ---------- -GCCUG-CGG 1741 CC--AA---- --GC-(GAA- ---A)G-CA- UUAA-GCAUC C|C|A-CCU- G-GGGAGUAC 1801 GCC-G---(G CAA)---C-G GU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGAGG-AAC A-U-GU-GGU -UUAAUU-CG -(AUGAUA-C G)--CGAGGA 1921 A-CCUUA-CC CGG-GC-UUG AAU-UG|--- -------C-A ---GUCG--- -CA----GCC 1981 -CAC-A--(- GAGA-)-CGU -G-GGNN--- U--------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- -----G---| CGU-CU-GUG |---A|A--G 2161 GU-GC-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GC-C(-GUG A)-GGUGU-C 2221 GG-C-(UUAA -GU)-GCCAU AA-------- CGAG-C--GC AACCC-CC-U |-UU--CCC- 2281 AG--UUGC-C AU-CGG---- ---------- ---------- ---G(---UG ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CCG|G 2701 G-CA-CU-C- U-GGG-GA-C A-CU-G-CCA --CC(-G--C AA)-GGU-GC -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AG CAC-G-GC-C CUUAC-G-UC -CG--GGGC- 2821 U-ACA-CA-C GUG--UUACA AUGGC-C-GG -UA--CAGAG GGA-C-G-G- UG-CAA-U(G 2881 -CAA)GUUG- ---------- CA-UCCAA-U CUUG--AAAU -CC-G-GUC- CCAGUUCGGA 2941 C-UGGGGUC- (UGCAAC-C- C)-GACCCCA -CGAAGC-UG -GAUU-CGC- -UAGUA-AUC 3001 GC-GCA-(UC -AGCCAU)-G GCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-AAG--- --CCA-UGAA A--GC-CGG- GG-GU-GCCU -GAA-G-UUC 3121 G-U------- -GA-CC---- ---------- ---------- -----(---- -GCGA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGA------ G-CG-AC-CU A-GGGC-AAC ACC-GG-UG- AUU-GGGG.. 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Prv.nigre2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Prevotella nigrescens str. B515 ATCC 25261. ACCESSION No information KEYWORDS No information. SOURCE Prevotella nigrescens str. B515 ATCC 25261. ORGANISM Prevotella nigrescens. REFERENCE 1 AUTHORS Paster,B.J., Dewhirst,F.E., Olsen,I. and Fraser,G.J. TITLE Phylogeny of Bacteroides, Prevotella, and Porphyromonas spp. and related bacteria JOURNAL J. Bacteriol. 176, 725-732 (1994) STANDARD No information COMMENTS Organism information Culture collection: ATCC 25261 Sequence information (bases 1 to 4376) Corresponding GenBank entry: L16479 ATCC 25261 = VPI 4203 biol_source= laryngotomy wound isolate_name= B515 NB: ATCC lists this as Prevotella intermedia BASE COUNT 338 a 351 c 449 g 300 t 2938 others ORIGIN 1 .......... .......... .......... ...ACAAUGG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAU -NAAC-GC-- UGGC-UAC-A -GGC-UU--A ACAC-AUGCA A-GUC-GUGG 121 G--NA-AA-C GG-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- CAUUANG-UG (--CU----- ---------- ---------- 241 --------UG -)CA-CAUUC UG-------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- ACG|-UU--G ACCG-GCGC- 361 -A-CG-GG-U GAGU---AUC -GC-GNAUC- CAA--CCU-G C-CCCN---N -ACUU-G-GG 421 -GAU-AC-CC C--------- ------GU-- U(-GAAA-)G -ACGG-C--C UNAUACC-CG 481 AU-GUG---- ---------- -------U-U UC-A--U-UG ---ACG-(-- --------GC 541 AU-------- -)-CCG---A UA-UG----A AA--CAAA-- ---GG----- ---------- 601 --(------- ---UNUU--- ---)------ ---------| -----C--C- G--GUA---- 661 ----AGGG-- AUG---G-|G GAUGC----- -GU|----CU G--AUUA-G- CUU-G---UU 721 GG-CG-GG-( GC-AAC-GG) -C-CCACC-A A|-GGC-GA- CGA------- -----UC-AG 781 U-AG-G-GG| -U-UCU--(G -AGA)-GGAA ----GG-U-- CCC-C|C-AC -AUUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -NAA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 AGG-AAUAUU G-GUCAAU-- GG-AC-(GCA A)-GUC-UGA ACCA|-GCCA AGUA-GC-GU 961 G-C-AG-G-A U-GAC--G-G CC(C-UA-U- -G)GG-UUGU AAA--CUNC| NUUU-AU-GU 1021 --GG-GAA-- UA-AAGU-G- ----C-A--( -----CGUG- ---------) --UG-CG-CN 1081 ---------- -------N-U U-GC-AUGU- A-CCU-C-AU G-AA--UAAG ---------G 1141 -ACCGGCU-N AUUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAA |-GGUC-C-- 1201 NGG-CGUUAU CC-GGAUUUA -UU-GGGU|U UAAA-GGGA- GUG-UAG-GC -G|-GU-CU- 1261 G-UU-AAG|C GUG---UUGU G-AAA-UU-U AG-GUG-C(- UC-A)A-CAU -UU-A-ACU- 1321 -UGCA-GCGC G-AAC-UGUC A-GACUU-GA GUA-----CA C-GC-AGCGC AGG-C|GGAA 1381 UU-CAUGGU- GUA-GCG(-G UGAAA)-UGC -UU-AGAU-A UC-AUGAGG- AACU-CCGA- 1441 -U-C-GC(-G AA-G)GCAG- -CCUGCGG-- ---------- ---------- ---------G 1501 AGU--GU-UA CUGACG-CUU AA-G------ -------CU- N-GAAG-GU- GC-GGG-UA- 1561 UC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CGC- A-CA-GU--A 1621 AAC-G-AUGG A--UG-CC-- -------C|G -CC-GU-UGG -C-------- ---------- 1681 -(-CC-U-)- ---------- ---------- ---------- ---------- -GCCNG-CGG 1741 CC--AA---- --GC-(GAA- ---A)G-CA- UUAA-GCAUC C|N|A-CCU- G-GGGAGUAC 1801 GCC-G---(G CAA)---C-G GU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGAGG-AAC A-U-GU-GGU -UUAAUU-CG -(AUGAUA-C G)--CGAGGA 1921 A-CCUUA-CC CGG-GC-UUG AAU-UG|--- -------C-A ---GUCG--- -CU----GCC 1981 -CAC-A--(- GAGA-)-CGU -G-NNNN--- U--------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- -----G---| NGU-CU-GUG |---A|A--G 2161 GU-GC-UGCA UN|G-UUG-- UCG-UCA|-G C-U---CG-U |GC-C(-GUG A)-GGUGU-C 2221 GG-C-(UUAA -GU)-GCCAU AA-------- CGAG-C--GC AACCC-CC-U |-UU--CCC- 2281 AG--UUGC-C AU-CGG---- ---------- ---------- ---G(---UG ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CCG|G 2701 G-CA-CU-C- U-GGG-GA-C A-CU-G-CCA --CC(-G--C AA)-GGU-GC -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UN -A-AAUC-AG CAC-G-GC-C CUUAC-G-UC -CG--GGGC- 2821 U-ACA-CA-C GUG--UUACA AUGGC-C-GG -UA--CAGAG GGA-C-G-G- UG-UAA-U(G 2881 -CAA)GUUG- ---------- CA-UCCAA-U CUUG--AAAU -CC-G-GUC- CCAGUUCGGA 2941 C-UGGGGUC- (UGCAAC-C- C)-GACCCCA -CGAAGC-UG -GAUU-CGC- -UAGUA-AUC 3001 GC-GCA-(UC -AGCCAU)-G GCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-AAG--- --NCA-UGAA A--GC-CGG- GG-GU-GCCU -GAA-G-UUC 3121 G-U------- -GA-CC---- ---------- ---------- -----(---- -GCGA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGA------ G-CG-AC-CU A-GGGC-AAN ACC-GG-UG- A......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Prv.nigre3 4376 bp RNA RNA 02-JUL-1998 DEFINITION Prevotella nigrescens str. Lambe 729-74 NCTC 9336. ACCESSION No information KEYWORDS No information. SOURCE Prevotella nigrescens str. Lambe 729-74 NCTC 9336. ORGANISM Prevotella nigrescens. REFERENCE 1 AUTHORS Gersdorf,H., Preisler,S., Choi,B.K. and Goebel,U. JOURNAL Unpublished (1994) STANDARD No information COMMENTS Organism information Culture collection: NCTC 9336 Sequence information (bases 1 to 4376) Corresponding GenBank entry: X73963|g509071 NCTC 9336 = VPI 8944 = ATCC 33563 (T) biol_source= dental plaque (gingivitis) isolate_name= Lambe 729-74 BASE COUNT 338 a 357 c 452 g 301 t 2928 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .GGC-UAC-A -GGC-UU--A ACAC-AUGCA A-GUCNRRGG 121 G--GA-AA-C GG-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- CAUUAUG-UG (--CU----- ---------- ---------- 241 --------UG -)CA-CAUUC UG-------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- ACG|-UC--G ACCG-GCGC- 361 -A-CG-GG-U GAGU---AUC -GC-GUAUC- CAA--CCU-G C-CCCU---U -ACUU-G-GG 421 -GAU-AC-CC C--------- ------GU-- U(-GAAA-)G -ACGG-C--C UAAUACC-CG 481 AU-GUG---- ---------- -------U-U UC-A--U-UG ---ACG-(-- --------GC 541 AU-------- -)-CCG---A UA-UG----A AA-CCAAA-- ---GG----- ---------- 601 --(------- ---UUUU--- ---)------ ---------| -----C--C- G--GUA---- 661 ----AGGG-- AUG---G-|G GAUGC----- -GU|----CU G--AUUA-G- CUA-G---UU 721 GG-CG-GG-( GC-AAY-GG) -C-CCACC-A A|-GGC-GA- CGA------- -----UC-AG 781 U-AG-G-GG| -U-UCU--(G -AGA)-GGAA ----GG-U-- CCC-C|C-AC -AUUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AAA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 AGG-AAUAUU G-GUCAAU-- GG-AC-(GYA A)-GUC-UGA ACCA|-GCCA AGUA-GC-GU 961 G-C-AG-G-A U-GAC--G-G CC(C-UA-U- -G)GG-UUGU AAA--CUGC| UUUU-AU-GU 1021 --GG-GAA-- UA-AAGU-GG --CGC-A--( -----CGUG- ---------) --UG-CG-CC 1081 ---------- -------A-U U-GC-AUGU- A-CCU-C-AU G-AA--UAAG ---------G 1141 -ACCGGCU-A AUUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAA |-GGUC-C-- 1201 AGG-CGUUAU CC-GGAUUUA -UU-GGGU|U UAAA-GGGA- GUG-UAG-GC -G|-GU-CU- 1261 G-UU-AAG|C GUG---UUGU G-AAA-UU-U AG-GUG-C(- UC-A)A-CAU -UU-A-ACU- 1321 -UGCA-GCGC G-AAC-UGUC A-GACUU-GA GUA-----CA C-GC-AGCGC AGG-C|GGAA 1381 UU-CAUGGU- GUA-GCG(-G UGAAA)-UGC -UU-AGAU-A UC-AUGAGG- AACU-CCGA- 1441 -U-C-GC(-G AA-G)GCAG- -CCUGCGG-- ---------- ---------- ---------G 1501 AGU--GU-UA CUGACG-CUU AA-G------ -------CU- C-GAAG-GU- GC-GGG-UA- 1561 UC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CGC- A-CU-GU--A 1621 AAC-G-AUGG A--UG-CC-- -------C|G -CC-GU-UGG -CG------- ---------- 1681 -(-CC-C-)- ---------- ---------- ---------- ---------U -GCCUG-CGG 1741 CC--AA---- --GC-(GAA- ---A)G-CA- UUAA-GCAUC C|C|A-CCU- G-GGGAGUAC 1801 GCC-G---(G CAA)---C-G GU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGAGG-AAC A-U-GU-GGU -UUAAUU-CG -(AUGAUA-C G)--CGAGGA 1921 A-CCUUA-CC CGG-GC-UUG AAU-UG|--- -------C-A ---GUCG--- -CA----GCC 1981 -CAC-A--(- GAGA-)-CGU -G-GGCU--- U--------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- -----G---| CGU-CU-GUG |---A|A--G 2161 GU-GC-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GC-C(-GUG A)-GGUGU-C 2221 GG-C-(UUAA -GU)-GCCAU AA-------- CGAG-C--GC AACCC-CC-U |-UU--CCC- 2281 AG--UUGC-C AU-CGG---- ---------- ---------- ---G(---UU ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CCG|G 2701 G-CA-CU-C- U-GGG-GA-C A-CU-G-CCA --CC(-G--C AA)-GGU-GC -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AG CAC-G-GC-C CUUAC-G-UC -CG--GGGC- 2821 U-ACA-CA-C GUG--UUACA AUGGC-C-GG -UA--CAGAG GGA-C-G-G- UG-CAA-U(G 2881 -CAA)GUUG- ---------- CA-UCCAA-U CUUG--AAAU -CC-G-GUC- CCAGUUCGGA 2941 C-UGGGGUC- (UGCAAC-C- C)-GACCCCA -CGAAGC-UG -GAUU-CGC- -UAGUA-AUC 3001 GC-GCA-(UC -AGCCAU)-G GCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-AAG--- --CCA-UGAA A--GC-CGG- GG-GU-GCCU -GAA-G-UUC 3121 G-U------- -GA-CC---- ---------- ---------- -----(---- -GCGA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGA------ G-CG-AC-CU A-GGGC-AAG ACC-GG-UG- AUU-GGGG-C 3301 U---AAGUC- GUAA-C.... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Prv.melan3 4376 bp RNA RNA 02-JUL-1998 DEFINITION Prevotella melaninogenica.. ACCESSION No information KEYWORDS No information. SOURCE Prevotella melaninogenica. ORGANISM Prevotella melaninogenica. REFERENCE 1 AUTHORS Tiveljung,A.M. JOURNAL Unpublished (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X82609|g886901 BASE COUNT 75 a 102 c 112 g 76 t 4011 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... ........UG AAU-UG|--- -------C-A ---GUCG--- -CU----GCC 1981 -CAC-A--(- GAGA-)-CGU -G-GGCU--- U--------- --CCC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- -----G---| CGU-CU-GUG |---A|A--G 2161 GU-GC-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GC-C(-GUG A)-GGUGU-C 2221 GG-C-(UUAA -GU)-GCCAU AA-------- CGAG-C--GC AACCC-C--U |-UU--CCC- 2281 AG--UUGC-C AU-CGG---- ---------- ---------- ---G(---UU ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CCG|G 2701 G-CA-CU-C- U-GGG--A-C A-CU-G-CCA --CC(-G--- AA)-GGU-GC -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AG CAC-G-GC-C CUUAC-A-UC -CG--GGGC- 2821 U-ACA-CA-C GUG--UUACA AUGGC-C-GG -UA--CAGAG GGA-C-G-G- UG-CAA-U(G 2881 -CAA)GUUG- ---------- CA-UCNAA-N UCUU--AAAU -CC-G-GUC- CCAGUUCGGA 2941 C--GGGGUC- (UGCAAC-C- C)-GACCCCA -CGAAGC-UG -GAUU-CGC- -UAGUA-AUC 3001 GC-GCA-(UC -AGC...).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS 2.7.1.2-CY 4376 bp RNA RNA 09-JAN-1999 DEFINITION 2.7.1.2 CYTOPHAGA_GROUP. ACCESSION No information KEYWORDS No information. SOURCE 2.7.1.2 CYTOPHAGA_GROUP. ORGANISM 2.7.1.2 CYTOPHAGA_GROUP. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 0 a 0 c 0 g 0 t 4376 others ORIGIN 1 x~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~-- ------~~~~ 541 ~~~~~~---- -~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~---~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- 1681 -(~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- -------~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~----~~~ 1981 ~~~~-~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~--- --~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~------ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~---~~ ---~~~--~~ 2341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- 3181 ---------- ---------- ---------- ------~)~~ ~~~~~~~~~~ ~~~~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS 2.7.1.2.1 4376 bp RNA RNA 09-JAN-1999 DEFINITION 2.7.1.2.1 MSC.AGGREGANS_SUBGROUP. ACCESSION No information KEYWORDS No information. SOURCE 2.7.1.2.1 MSC.AGGREGANS_SUBGROUP. ORGANISM 2.7.1.2.1 MSC.AGGREGANS_SUBGROUP. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 0 a 0 c 0 g 0 t 4376 others ORIGIN 1 x~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~-- ------~~~~ 541 ~~~~~~---- -~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~---~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- 1681 -(~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- -------~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~----~~~ 1981 ~~~~-~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~--- --~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~------ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~---~~ ---~~~--~~ 2341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- 3181 ---------- ---------- ---------- ------~)~~ ~~~~~~~~~~ ~~~~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS env.3811 4376 bp RNA RNA 02-JUL-1998 DEFINITION clone 3811.. ACCESSION No information KEYWORDS No information. SOURCE clone 3811. ORGANISM clone 3811. REFERENCE 1 AUTHORS Benlloch,S., Rodriguez-Valera,F. and Martinez-Murcia,A.J. TITLE Bacterial diversity in two coastal lagoons deduced from 16S rDNA PCR amplification and partial sequencing JOURNAL FEMS Microbiol. Ecol. 18, 267-280 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X89315 BASE COUNT 65 a 49 c 71 g 59 t 4132 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|.....A C--AUUA-G- CUA-G---UU 721 GG-UA-AG-( GU-AAC-GG) -C-UUACC-A A|-GGC-UA- CGA------- -----UG-UC 781 U-AG-G-GG| -U-UCU--(G -AGA)-GGAU ----GA-U-- CCC-C|C-AC -ACUGG-U-A 841 (CUGA-GA-C ACG)--GACC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 AGG-AAUAUU G-GGCAAU-- GG-AG-(GCA A)-CUC-UGA CCCA|-GCCA UGCC-GC-GU 961 G-C-AG-G-A A-GAA--U-G UU(U-UA-U- -G)AA-UUGU AAA--CUGC| UUUU-GU-AU 1021 --GG-GAA-- GA-AAUG-UU --UCU-A--( -----CGUG- ---------) --UA-GA-GA 1081 ---------- --------UU U-GC-CGGU- A-CC...... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS env.6911 4376 bp RNA RNA 02-JUL-1998 DEFINITION clone 6911.. ACCESSION No information KEYWORDS No information. SOURCE clone 6911. ORGANISM clone 6911. REFERENCE 1 AUTHORS Benlloch,S., Rodriguez-Valera,F. and Martinez-Murcia,A.J. TITLE Bacterial diversity in two coastal lagoons deduced from 16S rDNA PCR amplification and partial sequencing JOURNAL FEMS Microbiol. Ecol. 18, 267-280 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X89334 BASE COUNT 68 a 52 c 73 g 52 t 4131 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 GG-UA-AG-( GU-AAC-GG) -C-UUACC-A U|-GGC-UA- CGA------- -----UA-GG 781 U-AG-G-GG| -G-CCU--(G -AGA)-GGGU ----GA-U-- CCC-C|C-AC -ACUGG-U-A 841 (CUGA-GA-C ACG)--GACC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 AGG-NAUAUU G-GUCAAU-- GG-AG-(GCA A)-CUC-UGA ACCA|-GCCA UGCC-GC-GU 961 G-C-AG-G-A A-GAA--U-G CC(C-UA-U- -G)GG-UUGU AAA--UUGC| UUUU-AU-UU 1021 --GG-GAA-- UA-AACC-UU --GGU-A--( -----UGUG- ---------) --UA-CC-AA 1081 ---------- -------G-C U-GAAUGUC- ACGCA-A-AC G-AA--UAAG CA........ 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Msc.aggreg 4376 bp RNA RNA 02-JUL-1998 DEFINITION Microscilla aggregans subsp. catalatica str. HI-3 ATCC 23190. ACCESSION No information KEYWORDS No information. SOURCE Microscilla aggregans subsp. catalatica str. HI-3 ATCC 23190. ORGANISM Microscilla aggregans. REFERENCE 1 AUTHORS Woese,C.R. TITLE A phylogenetic analysis of the flavobacterial phylum JOURNAL Unpublished (1991) STANDARD No information COMMENTS Organism information Culture collection: ATCC 23190 Sequence information (bases 1 to 4376) Corresponding GenBank entry: M58791 isolate_name= HI-3 BASE COUNT 401 a 317 c 411 g 326 t 2921 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~NU UAUACAACGG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAU -GAAC-GC-- UAGC-GGC-A -GGC-UU--A ACAC-AUGCA A-GUC-GAGG 121 G--GU-AA-C AG-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ----GGA-AG (--CU----- ---------- ---------- 241 --------UG -)CU-UCC-- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- CUG|-AC--G ACCG-GCGC- 361 -A-CG-GG-U GCGU---AAC -GC-GUAUA- GAA--UCU-A C-CUUA---U -ACUG-G-AG 421 -GAU-AG-CC C--------- ------GA-- A(-GAAA-)U -UCGG-A--U UAAUACU-CC 481 AU-AAC---- ---------- -------A-U UC-A--G-AU ---ACU-(-- --------GC 541 AU-------- -)-AGU---A UU-UG----A CU--UAAA-- ---GC----- ---------- 601 --(------- ---UUCG--- ---)------ ---------| -----G--C- G--GUA---- 661 ----UAAG-- AUG---A-|C UAUGC----- -GU|----CC C--AUUA-G- CUA-G---UU 721 GG-UA-AG-( GU-AAC-GG) -C-UUACC-A A|-GGC-AA- CGA------- -----UG-GG 781 N-AG-G-GG| -G-CCU--(G -AGA)-GGGU ----UA-U-- CCC-C|C-AC -ACUGG-U-A 841 (CUGA-GA-C ACG)--GACN -NGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 AGG-AAUAUU G-GACAAU-- GG-AG-(GCA A)-CUC-UGA UCCA|-GCCA UGCC-GC-GU 961 G-A-AG-G-A A-GAA--U-G UC(C-UA-C- -G)GA-UUGU AAA--CUUC| UUUU-AU-UU 1021 --GG-GAA-- GA-AACC-UU --UCU-A--( -----CGUG- ---------) --UA-GA-AA 1081 ---------- -------G-C U-GA-CGGU- A-CCA-A-AC G-AA--UAAG ---------G 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCNNNN-A) U-A-C-GGAG |-NGUC-C-- 1201 NAG-CGUUAU CC-GGAAUCA -UU-GGGU|U UAAA-GGGU- UCG-CAG-GC -G|-GU-UU- 1261 A-AU-AAG|U CAG---UGGU G-AAA-UC-C UA-CAG-C(- UC-A)A-CUG -UA-G-AAU- 1321 -GGCC-AUUG A-UAC-UGUU A-GACUU-GA AUU-----AA G-UU-GGAGU AGG-C|GGAA 1381 UG-UGUAGU- GUA-GCG(-G UGAAA)-UGC -UU-AGAU-A UU-ACACAG- AACA-CCGA- 1441 -U-A-GC(-G AA-G)GCAG- -CUUACUN-- ---------- ---------- ---------A 1501 ACU--UA-UA UUGACG-CUC AU-G------ -------AA- C-GAAA-GC- GU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-U-AUCA U--UA-CU-- -------C|G -AU-AU-UGG -C-------- -G-------- 1681 -(AUA-UA)C G--------- ---------- ---------- ---------- -GUCAG-UGU 1741 CU--AA---- --GC-(GAA- ---A)G-UG- AUAA-GUAAU G|C|A-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CN--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUNNUA-C G)--CGAGGA 1921 A-CCUUA-CC AGG-GC-UUA AAU-GU|--- -------A-G ---AUUG--- -AC----AGA 1981 -UUU-G--(- GAAA-)-CAA -G-UCCU--- ---------- ---UC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GA-------- ---------| CAA-UU-UAC |---A|A--G 2161 GU-GC-UGCA UG|G-CNG-- UCG-UCA|-G C-U---CG-U |GC-C(-GUG A)-GGUGU-U 2221 GG-G-(UUAA -GU)-CCCNC AA-------- CGAG-C--GC AACCC-CU-A |-UU--CUU- 2281 AG--UUAC-C AG-CAC---- ---------- ---------- ---G(---UU ---AAG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-GA-CU-C- U-AAG-AA-A A-CU-G-CCG --GU(-G--C AA)-ACC-GU -GAGG-A-AG 2761 G-UG-GGG-A CG-ACG--UC -A-AGUC-AU CAC-G-GC-C CNUAC-G-UC -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-G-AG -UA--CAGAG GGC-A-G-C- UA-CUG-G(G 2881 -UGA)CCAG- ---------- AU-GCUAA-U CUCA--AAAA -CU-C-GUC- UCAGUUCGGA 2941 U-CGAAGUC- (UGCAAC-U- C)-GACUUCG -UGAAGC-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-GCA-(UC -AGCCAU)-G GCG-CGGUG- AAUAC-GUU- CCC-GGG-CN UUGUA----C 3061 ACACCGCCC- GUC-AAA--- --CCA-UGGA A--NC-UAG- GG-GU-GCCU -GAA-G-UCU 3121 G-U------- -GA-CC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGA------ G-CG-GC-CU A-GGGU-AAA ACU-AG-UA- ACU-GGGG.. 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS env.5811 4376 bp RNA RNA 02-JUL-1998 DEFINITION clone 5811.. ACCESSION No information KEYWORDS No information. SOURCE clone 5811. ORGANISM clone 5811. REFERENCE 1 AUTHORS Benlloch,S., Rodriguez-Valera,F. and Martinez-Murcia,A.J. TITLE Bacterial diversity in two coastal lagoons deduced from 16S rDNA PCR amplification and partial sequencing JOURNAL FEMS Microbiol. Ecol. 18, 267-280 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X89328 (bases 26 to 238) BASE COUNT 57 a 47 c 63 g 44 t 4165 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .....UG-GG 781 U-AG-G-GG| -G-CCU--(G -AGA)-GGGU ----UG-U-- CCC-C|C-AC -ACUGG-U-A 841 (CUGA-GA-C ACG)--GACC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 AGG-AAUAUU G-GUCAAU-- GG-AG-(GGA A)-CUC-UGA ACCA|-GCCA UACC-GC-GU 961 G-C-AC-C-A A-GAA--U-G CC(C-UA-U- -G)GG-UUGU AAA--CUGC| UUUU-AU-UU 1021 --GG-GAA-- GA-ACCC-UG --AUU-A--( -----CGUG- ---------) --UA-AU-CA 1081 ---------- -------G-N U-GA-CGGN- A-CCA-A-UC G-AA--UAAG .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS 2.7.1.2.2 4376 bp RNA RNA 09-JAN-1999 DEFINITION 2.7.1.2.2 CHRYSEOBACTERIUM_SUBGROUP. ACCESSION No information KEYWORDS No information. SOURCE 2.7.1.2.2 CHRYSEOBACTERIUM_SUBGROUP. ORGANISM 2.7.1.2.2 CHRYSEOBACTERIUM_SUBGROUP. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 0 a 0 c 0 g 0 t 4376 others ORIGIN 1 x~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~-- ------~~~~ 541 ~~~~~~---- -~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~---~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- 1681 -(~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- -------~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~----~~~ 1981 ~~~~-~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~--- --~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~------ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~---~~ ---~~~--~~ 2341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- 3181 ---------- ---------- ---------- ------~)~~ ~~~~~~~~~~ ~~~~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Emb.brevis 4376 bp RNA RNA 02-JUL-1998 DEFINITION Empedobacter brevis. ACCESSION No information KEYWORDS No information. SOURCE Empedobacter brevis. ORGANISM Empedobacter brevis. REFERENCE 1 AUTHORS Nakagawa,Y. and Yamasato,K. TITLE Emendation of the genus Cytophaga and transfer of Cytophaga agarovorans and Cytophaga salmonicolor to Marinilabilia gen. nov.: phylogenetic analysis of the Flavobacterium-Cytophaga complex JOURNAL Int. J. Syst. Bacteriol. 46, 599-603 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: D14022|g1160326 Former RDP Sids: F.breve2 NB: former name Flavobacterium breve BASE COUNT 335 a 255 c 356 g 303 t 3127 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 ...CG-GG-U GCGU---AAC -GC-GUAUG- CAA--CUU-G C-CCUA---C -UGAA-A-AG 421 -GAU-AG-CC C--------- ------UU-- C(-GAAA-)G -GAGG-U--A UNAUACU-UU 481 AU-AAC---- ---------- -------A-G AU-U--G-A- ---AUG-(-- --------GC 541 AU-------- -)-CAU---- UU-AA----U UU-UGAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--CAG---- 661 ----UAGG-- AUA---G-|G CAUGC----- -GU|----AA G--AUUA-G- UUA-G---UU 721 GG-AG-AG-( GU-AAC-GG) -C-UCACC-A A|-GAC-GA- UGA------- -----UC-UU 781 U-AG-G-GG| -G-CCU--(G -AGA)-GGGU ----GA-A-- CCC-C|C-AC -ACUGG-U-A 841 (CUGA-GA-C ACG)--GACC -AGN-C-UCC -(UACG)--G GAG-GC-AG- C-N---GU-G 901 AGG-AAUAUU G-GUCAAU-- GG-GU-(GGA A)-GCC-UGA UCCA|-GCCA UCCC-GC-GU 961 G-U-AG-G-U C-GAC--U-G CC(U-UA-U- -G)GG-UUGU AAA--CUAC| UUUU-AU-CU 1021 --GG-GGA-- UA-AACC-UA --CUC-N--( -----CGUG- ---------) --UG-AG-UA 1081 ---------- -------G-C U-GA-AGGU- A-CCA-G-AA G-AA--UAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAUC NNCGGUN-A) U-A-C-GGAG |-GGUG-C-- 1201 AAG-CGUUAU CC-GGAUUUA -UU-GGGU|U UAAA-GGGU- CCG-UAG-GC -G|-GA-UU- 1261 A-AU-CAG|U CAG---UGGU G-AAA-UC-C CG-CAG-C(- UU-A)A-CUG -UG-G-AAC- 1321 -UGCC-AUUG A-UAC-UGUU A-GUCUU-GA GUG-----AU G-UU-GAAGU GGC-U|GGAA 1381 UG-UGUAGU- GUA-GCG(-G UGAAA)-UGC -UU-AGAU-A UU-ACGCAG- AACU-CCAA- 1441 -U-U-GC(-G AA-G)GCAG- -GUCACUA-- ---------- ---------- ---------A 1501 GUA--UC-AA CUGACG-CUG AU-G------ -------GA- C-GAAA-GC- GU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGG A--UA-CU-- -------U|G -CU-GU-UGG -GG-U----- ---------- 1681 -(-UU-CG)- ---------- ---------- ---------- --------UC -UUCAG-UGG 1741 CU--AA---- --GC-(GAA- ---A)G-UU- AUAA-GUAUC C|C|A-CCU- G-GGGAGUAC 1801 GUU-C---(G CAA)---G-A AU-GAAACUC -AAA-GGAAU UG-ACGGG-N -N-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGAUA-C G)--CGAGGA 1921 A-CCUUA-CC AAG-GC-UUA AAU-GC|--- -------A-U ---AAUG--- -AC----AGA 1981 -UCU-A--(- GAAA-)-UAG -A-UUUU--- ---------- ---UC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GA-------- ---------| CAG-AA-UGC |---A|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GC-C(-GUG A)-GGUGU-U 2221 AG-G-(UUAA -GU)-CCUGC AA-------- CGAG-C--GC AACCC-CU-A |-UC--AUU- 2281 AG--UUGC-C AG-CGU---- ---------- ---------- ---U(---UN ---NAG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----UCG|G 2701 G-GA-CU-C- U-AAU-GA-G A-CU-G-CCG --GU(-G--C AA)-ACC-GC -GAGG-A-AG 2761 G-UG-GGG-N NG-ACG--UC -A-AGUC-AU CAC-G-GC-C CUUAC-G-UC -UU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGU-A-AG -UA--CAGAG GGC-A-G-C- UA-CUU-G(G 2881 -CAA)CAAG- ---------- AU-GCGAA-U CUCG--AAAA -CU-U-AUC- UCAGUUCGGA 2941 U-UGGAGUC- (UGCAAC-U- C)-GACUCUA -UGAAGC-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-AUA-(UC -AGCCAU)-G AUG-CGGUG- AAUAC-G... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Emb.brevi2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Empedobacter brevis. ACCESSION No information KEYWORDS No information. SOURCE Empedobacter brevis. ORGANISM Empedobacter brevis. REFERENCE 1 AUTHORS Gherna,R. and Woese,C.R. TITLE A partial phylogenetic analysis of the "Flavobacter-Bacteroides" phylum: basis for taxonomic restructuring JOURNAL Syst. Appl. Microbiol. 15, 513-521 (1992) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: M59052 Former RDP Sids: F.breve NB: former name Flavobacterium breve BASE COUNT 403 a 296 c 422 g 344 t 2911 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~NCAAUGG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAU -NAAC-GC-- UAGC-GGG-A -GGC-UU--A ACAC-AUGCA A-GCC-GAGG 121 G--------- -----GUAG- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---AAUU-AG (--CU----- ---------- ---------- 241 --------UG -)CU-AAUU- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --UGAG---- ---|------ ACCG-GCGC- 361 -A-CG-GG-U GCGU---AAC -GC-GUAUG- CAA--CUU-G C-CCUA---C -UGAA-A-AG 421 -GAU-AG-CC C--------- ------AG-- A(-GAAA-)U -UUGG-A--U UAAUACU-UU 481 AU-AAU---- ---------- -------A-G AC-U--G-A- ---AUG-(-- --------GC 541 AU-------- -)-CAU---- UU-AG----U UU-UGAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--CAG---- 661 ----UAGG-- AUA---G-|G CAUGC----- -GU|----AA G--AUUA-G- AUA-G---UU 721 GG-UG-AG-( GU-AAC-GG) -C-UCACC-A A|-GUC-GA- CGA------- -----UC-UU 781 U-AG-G-GG| -G-CCU--(G -AGA)-GGGU ----GA-A-- CCC-C|C-AC -ACUGG-U-A 841 (CUGA-GA-C ACG)--GACC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 AGG-AAUAUU G-GACAAU-- GG-GU-(GGA A)-GCC-UGA UCCA|-GCCA UCCC-GC-GU 961 G-U-AG-G-A U-GAC--G-G CC(U-UA-U- -G)GG-UUGU AAA--CUAC| UUUU-AU-CU 1021 --GG-GGA-- UA-AACC-UA --CUU-A--( -----CGUG- ---------) --UA-AG-UA 1081 ---------- -------G-C U-GA-AGGU- A-CCA-G-AA G-AA--UAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGUG-C-- 1201 NAG-CGUUAU CC-GGAUUUA -UU-GGGU|U UAAA-GGGU- CCG-UAG-GC -G|-GA-CU- 1261 G-AU-CNG|U CAG---UGGU G-AAA-UC-C UA-UCG-C(- UU-A)A-CGA -UA-G-AAC- 1321 -UGCC-AUUG A-UAC-UGUU A-GUCUU-GA AUU-----AG U-UU-GAAGU GGC-U|GGAA 1381 UG-UGUAGU- GUA-GCG(-G UGAAA)-UGC -UU-AGAU-A UU-ACGCAG- AACA-CCAA- 1441 -U-U-GC(-G AA-G)GCAG- -GUCACUA-- ---------- ---------- ---------A 1501 GUC--UA-UA UUGACG-CUG AU-G------ -------GA- C-NAAA-GC- GU-NGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGG A--UA-CU-- -------U|G -CU-GU-UGG -GA-C----- ---------- 1681 -(-UU-CG)- ---------- ---------- ---------- --------GU -UUCAG-UGG 1741 CU--AA---- --GC-(GAA- ---A)G-UU- AUAA-GUAUC C|C|A-CCU- G-GGGAGUAC 1801 GUU-C---(G CAA)---G-A AU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CN--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGAUA-C G)--CGAGGA 1921 A-CCUUA-CC AAG-GC-UUA AAU-GC|--- -------A-U ---AAUG--- -AC----GUA 1981 -UUU-G--(- GAAA-)-CAG -A-UAUU--- ---------- ---UC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GA-------- ---------| CAG-AA-UGC |---A|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GC-C(-GUG A)-GGUGU-U 2221 AG-G-(UUAA -GU)-CCUNC AA-------- CGAG-C--GC AACCC-CU-A |-UC--AUU- 2281 AG--UUGC-C AG-CGU---- ---------- ---------- ---U(---UA ---AAG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----ACG|G 2701 G-GA-CU-C- U-AAU-GA-G A-CU-G-CCA --AU(-G--A AA)-GUU-GA -GAGG-A-AG 2761 G-UG-GGG-A CG-ACG--UC -A-AGUC-AU CAC-G-GC-C CUUAC-G-UC -UU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGU-A-AG -UA--CAGAG GGC-A-G-C- UA-CUG-G(G 2881 -UGA)CCAG- ---------- AU-GCGAA-U CUCG--AAAA -CU-U-AUC- UCAGUUCGGA 2941 U-UGGAGUC- (UGCAAC-U- C)-GACUCUA -UGAAGC-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-AUA-(UC -AGCCAU)-G AUG-CGGUG- AAUAC-GUU- CCC-GGG-CN UUGUA----C 3061 ACACCGCCC- GUC-AAG--- --CCA-UGGA A--GC-UGG- GG-GU-ACCU -GAA-G-UCG 3121 G-U------- -GA-CCG--- ---------- ---------- -----(---- -UAAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- AGGA------ G-CU-GC-CU A-GGGU-AAA ACU-GG-UA- ACN-AGGG-C 3301 .......... GUAA-CAAG. .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Wee.virosa 4376 bp RNA RNA 02-JUL-1998 DEFINITION Weeksella virosa. ACCESSION No information KEYWORDS No information. SOURCE Weeksella virosa. ORGANISM Weeksella virosa. REFERENCE 1 AUTHORS Gherna,R. and Woese,C.R. TITLE A partial phylogenetic analysis of the "Flavobacter-Bacteroides" phylum: basis for taxonomic restructuring JOURNAL Syst. Appl. Microbiol. 15, 513-521 (1992) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: M93152 ATCC 43766 = NCTC 11634 (T) BASE COUNT 393 a 291 c 423 g 347 t 2922 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~NNNCAAUGG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAU -GAAC-GC-- UAGC-GGG-A -GGC-CU--A ACAC-AUGCA A-GCC-GAGC 121 G--------- -----GUAG- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---AUUA-UC (--UU----- ---------- ---------- 241 --------CG -)GA-UAAU- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --UGAG---- ---|------ AGCG-GCGU- 361 -A-CG-GG-U GAGU---AUC -GC-GUAUG- UAA--CUU-G C-CUUA---U -AGAA-U-GG 421 -GAU-AG-CC C--------- ------GG-- A(-GAAA-)U -UCGG-A--U UAAUACC-GU 481 AU-AUA---- ---------- -------A-A GC-U--A-G- ---GUG-(-- --------GC 541 AU-------- -)-CAU---- UU-AG----U UU-UGAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--CUA---- 661 ----UAAG-- AUA---G-|A CAUGC----- -GU|----AA G--AUUA-G- AUA-G---UU 721 GG-UG-AG-( GU-AAC-GG) -C-UCACN-A A|-GUC-GA- UGA------- -----UC-UU 781 U-AG-G-GG| -U-CCU--(G -AGA)-GGGA ----GA-U-- CCC-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGN-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 AGG-AAUAUU G-GACAAU-- GG-GU-(UAG C)-GCC-UGA UCCA|-GCCA UCCC-GC-GU 961 G-C-AG-G-A U-GAC--G-G CC(U-UA-U- -G)GG-UUGU AAA--CUGC| UUUU-AU-AU 1021 --GU-GAA-- UA-AACC-UA --UCC-A--( -----CGAGY ---------) --UG-GA-UA 1081 ---------- -------G-U U-GA-AGGU- A-GCA-U-AU G-AA--UAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUN-A) U-A-C-GGAG |-NGUG-C-- 1201 GAG-CGUUAU CC-GGAUUUA -UU-GGGU|U UAAA-GGGU- CCG-UAG-GC -G|-GA-UC- 1261 A-AU-AAG|U CAG---UGGU G-AAA-UC-C UA-UCG-C(- UU-A)A-CGA -UA-G-AAC- 1321 -UGCC-AUUG A-UAC-UGUU G-AUCUA-GA AUU-----AG U-UU-GAAGU AGC-U|AGAA 1381 UG-UGUAGU- GUA-GCG(-G UGAAA)-UGC -AU-AGAU-A UU-ACGCAG- AAUA-CCAA- 1441 -U-U-GC(-G AA-G)GCAG- -GUUACUA-- ---------- ---------- ---------A 1501 GUC--UA-UA UUGACG-CUG AU-G------ -------GA- C-GAAA-GC- GU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGG A--UA-CU-- -------U|G -CU-GU-UGG -GU-U----- ---------- 1681 -(-UU-CG)- ---------- ---------- ---------- --------GG -CUCAG-UGG 1741 UU--AA---- --GC-(GAA- ---A)G-UA- AUAA-GUAUC C|C|A-CCU- G-GGGAGUAC 1801 GAU-C---(G CAA)---G-A UU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUNNUA-C G)--CGAGGA 1921 A-CCUUA-CC AAG-GC-UUA AAU-GC|--- -------A-U ---AAUG--- -AC----AGA 1981 -UUU-A--(- GAAA-)-UAG -A-UUUU--- ---------- ---UC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GA-------- ---------| CAG-AA-UGC |---A|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GC-C(-GUG A)-GGUGU-U 2221 AG-G-(UUAA -GU)-CCUGC AA-------- CGAG-C--GC AACCC-UU-A |-UC--AUU- 2281 AG--UUGC-C AG-CGU---- ---------- ---------- ---U(---UA ---AAG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----ACG|G 2701 G-GA-CU-C- U-AAU-GA-G A-CU-G-CCG --GC(-G--U AA)-GCC-GN -GAGG-A-AG 2761 G-UG-GGG-A CG-ACG--UC -A-AGUC-AU CAC-G-GC-C CUUAC-G-UC -UU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-Y-GG -UA--CAGAG GGC-A-G-C- UA-CCA-G(G 2881 -UGA)CUGG- ---------- AU-GCGAA-U CUCU--AAAG -CC-G-GNC- UCAGUUCGGA 2941 U-UGGAGUC- (UGCAAC-U- C)-GACUCUA -UGAAGC-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-AUA-(UC -AGCCAU)-G AUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-AAG--- --NCA-UGGA A--GC-UGG- GG-GU-ACCU -GAA-G-UUG 3121 G-U------- -GA-CCG--- ---------- ---------- -----(---- -UAAC----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- AGGA------ G-CU-AC-CU A-GGGU-AAA ACU-GG-UA- ACU-AGG... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Orn.rhinot 4376 bp RNA RNA 02-JUL-1998 DEFINITION Ornithobacterium rhinotracheale. ACCESSION No information KEYWORDS No information. SOURCE Ornithobacterium rhinotracheale. ORGANISM Ornithobacterium rhinotracheale. REFERENCE 1 AUTHORS Vandamme,P., Segers,P., Vancanneyt,M., Van Hove,K., Mutters ,R., Hommez,J., Dewhirst,F., Paster,B., Kersters,K., Falsen ,E., Devriese,L.A., Bisgaard,M., Hinz,K.-H. and Mannheim,W. TITLE Ornithobacterium rhinotracheale gen. nov., sp. nov., isolated from the avian respiratory tract JOURNAL Int. J. Syst. Bacteriol. 44, 24-37 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: L19156 BASE COUNT 376 a 290 c 413 g 320 t 2977 others ORIGIN 1 .......... .......... .......... ........GG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAU -NAAC-GC-- UAGC-GGG-A -GGC-CU--A ACAC-AUGCA A-GUC-GAGG 121 G--------- -----AGAA- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---UUAA-UU (--UA----- ---------- ---------- 241 --------CG -)GA-UUAA- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --GGAA---- ---|------ ACCG-GCGC- 361 -A-CG-GG-U GCGU---AAC -GC-GUAUG- CAA--CUU-G C-CCUU---A -UCAG-G-AG 421 -GAU-AG-CC C--------- ------GG-- G(-GAAA-)C -UCGG-A--U UNAUACU-CC 481 AU-AAG---- ---------- -------A-U UU-U--G-A- ---UUG-(-- --------GC 541 AU-------- -)-CGA---- UU-NN----N AU-UGAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--U- G--GAU---- 661 ----AAGG-- AUA---G-|G CAUGC----- -GU|----CA G--AUUA-G- UUA-G---UU 721 GG-UA-GU-( GU-AAC-GG) -A-CUACN-A A|-GGC-GA- UGA------- -----UC-UG 781 U-AG-G-GG| -U-CCU--(G -AGA)-GGGA ----GA-N-- CCC-C|C-AC -ACUGG-U-A 841 (CUGA-GA-C ACG)--GACC -NGN-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 AGG-AAUAUU G-GACAAU-- GG-AG-(GGA A)-CUC-UGA UCCA|-GCCA UCCU-GC-GU 961 G-C-AG-G-A A-GAC--G-G CC(C-UN-U- -G)GG-UUGU AAA--CUNC| NUUU-GU-AU 1021 --GG-GGA-- UN-AAUC-UA --CNU-A--( -----CGUG- ---------) --UA-GG-UA 1081 ---------- -------G-U U-GA-AGGU- A-CCA-U-AC G-AA--UAAG ---------C 1141 -AUCGGCU-N ACUCC-GUG( CCA--GCAGC CGCGGUN-A) U-N-C-GGAG |-NAUG-C-- 1201 NAG-CGUUAU CC-GGAUUCA -UU-GGGU|U UAAA-GGGU- CCG-UAG-GC -G|-GG-CU- 1261 G-AU-AAG|U CAG---UNGU G-AAA-UU-U UG-UCG-C(- UC-A)A-CGA -UA-A-AAC- 1321 -UGCC-AUUN A-UAC-UGUU A-GUCUU-GA GUG-----AU A-UU-GAAGU AGC-U|GGAA 1381 UG-UGUAGU- GUA-GCG(-G UGAAA)-UGC -AU-AGAU-A UU-ACACAG- AACA-CCGA- 1441 -U-U-GC(-G AA-G)GCAG- -GUUACUA-- ---------- ---------- ---------A 1501 GUA--UU-NA CUGACG-CUG AA-G------ -------GA- C-NAAA-GC- GU-NNG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----NGUA-G UC----CAC- G-CN-GU--N 1621 AAC-G-AUGC U--NA-CU-- -------N|G -UN-UU-CGG -GG-N----- ---------- 1681 -(-NU-NA)- ---------- ---------- ---------- --------UC -UUCGG-AGA 1741 CC--AA---- --GC-(GAA- ---A)G-UG- AUAA-GUUAG C|C|A-CCU- G-GGGAGUAC 1801 GUU-C---(G CAA)---G-A AU-GAAACUC -NAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CN-AG CGGUGG-AGC N-U-GU-GGU -UUNAUU-CG -(AUNNUA-C G)--CGAGGA 1921 A-CCUUA-CC AAG-GC-UUA AAU-GC|--- -------A-U ---AAUG--- -AC----AGG 1981 -AGU-G--(- GAAA-)-CAN -N-NUUU--- ---------- ---UC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GA-------- ---------| CAG-AA-UGC |---A|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GC-C(-GUG A)-GGUGU-U 2221 AG-G-(UUAA -GU)-CCUGC AA-------- CGAG-C--GC AACCC-CU-A |-UC--AUU- 2281 AG--UUGC-C AG-CGU---- ---------- ---------- ---A(---UA ---AAG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----ACG|G 2701 G-GA-CU-C- U-AAU-GA-G A-CU-G-CCA --AC(-G--C AA)-GUU-GA -GAGG-A-AG 2761 G-UG-GGG-A CG-ACG--UN -A-AGUC-AU CAC-G-GC-C CUUAC-G-UC -UU--GGGC- 2821 C-ACA-CA-C GUG--CUACA AUGGU-C-GG -UA--CAGAG GGC-A-G-C- UA-CCG-G(G 2881 -CGA)CUGG- ---------- AN-GCGAA-U CUCU--AAAG -CC-G-AUC- UCAGUUCGGA 2941 U-UGGAGUC- (UGCAAC-U- N)-GACUCUA -UGAAGC-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-AAA-(UY -AGCCAU)-G UUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-AAG--- --CCA-UGGA A--GC-UGG- GN-NN-NCCU -NAA-G-UCG 3121 G-U------- -GA-CC---- ---------- ---------- -----(---- -GAAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGA------ G-CU-GC-CU A-GGGU-AAA ACU-AG-U.. .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Csb.menin2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Chryseobacterium meningosepticum. ACCESSION No information KEYWORDS No information. SOURCE Chryseobacterium meningosepticum. ORGANISM Chryseobacterium meningosepticum. REFERENCE 1 AUTHORS Greisen,K., Loeffelholz,M., Purohit,A. and Leong,D. TITLE PCR primers and probes for the 16S rRNA gene of most species of pathogenic bacteria, including bacteria found in cerebrospinal fluid JOURNAL J. Clin. Microbiol. 32, 335-351 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: U02896|g455039 Former RDP Sids: F.meningo2 ATCC 13253 = DSM 2800 = NCTC 10016 (T) NB: former name Flavobacterium meningosepticum BASE COUNT 76 a 79 c 86 g 62 t 4073 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... UG-ACG--UC -N-AAUC-AU CAC-G-GC-C CUUAC-G-UC -UU--GGGC- 2821 CNACA-CA-C GUG--CUACA AUGGC-C-GG -UA--CAGAG GGC-A-G-C- UA-CCU-A(G 2881 -CGA)UAGG- ---------- AU-GCAAA-U CUCG--AAAG -CC-G-GUC- UCAGUUCGGA 2941 U-UGGAGUC- (UGCAAC-U- C)-GACUCUA -UGAAGC-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-GCA-(UC -AGCCAU)-G GCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-AAG--- --CCA-UGGA A--GC-UGG- GG-GU-ACCU -GAA-G-UCG 3121 G-U------- -GA-CCG--- ---------- ---------- -----(---- -UAAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- AGGA------ G-CU-GC-CU A-GGGU-AAA ACU-AG-UA- ACU-AGGG-C 3301 U---AAGUC- GUA....... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Csb.menin3 4376 bp RNA RNA 02-JUL-1998 DEFINITION Chryseobacterium meningosepticum. ACCESSION No information KEYWORDS No information. SOURCE Chryseobacterium meningosepticum. ORGANISM Chryseobacterium meningosepticum. REFERENCE 1 AUTHORS Nakagawa,Y. and Yamasato,K. TITLE Emendation of the genus Cytophaga and transfer of Cytophaga agarovorans and Cytophaga salmonicolor to Marinilabilia gen. nov: phylogenetic analysis of the Flavobacterium-Cytophaga complex JOURNAL Int. J. Syst. Bacteriol. 46, 599-603 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: D14018|g1711221 NB: Added by Bergey's to RDP Release 6.0 tree BASE COUNT 336 a 258 c 355 g 297 t 3130 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .GCG-GCGU- 361 -A-CG-GG-U GCGG---AAC -AC-GUGUG- CAA--CCU-N C-CUUU---A -UCAG-G-GG 421 -GAU-AG-CC U--------- ------UU-- C(-GAAA-)G -GAAG-A--U UAAUUCC-CC 481 AU-AAU---- ---------- -------A-U AU-U--A-A- ---CUG-(-- --------GC 541 AU-------- -)-CAG---- UU-AA----U AU-UGAAA-- ---AC----- ---------- 601 --(------- ---UACG--- ---)------ ---------| -----G--U- G--GAU---- 661 ----AGAG-- AUG---G-|G CACGC----- -GC|----AA G--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAC-GG) -C-UCACC-A A|-GGC-UA- CGA------- -----UC-UU 781 U-AG-G-GG| -G-CCU--(G -AGA)-NGGU ----GA-U-- CCN-N|N-AC -ACUGG-U-A 841 (CUGA-GA-C ACG)--GACC -AGN-C-UCC -(UACG)--G GAG-GC-AN- C-A---NU-G 901 AGG-AAUAUU G-GACAAU-- GG-GU-(GGA A)-GCC-UGA UCCA|-GCCA UCCC-GC-GU 961 G-C-AG-G-A A-GAC--G-G CC(C-UA-U- -G)GG-UUGU NAA--CUNC| UUUU-AU-CU 1021 --GG-GGA-- UN-AACC-UN --CUU-A--( -----CGUG- ---------) --UA-AG-UA 1081 ---------- -------G-C U-GA-AGGU- A-CCA-G-AA G-AA--UAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCANC NNCGGUN-A) U-A-C-GGAG |-GGUG-C-- 1201 NAG-CGUUAU CC-GGAUUUA -UU-GGGU|U UAAA-GGGU- CCG-UAG-GC -G|-GA-CU- 1261 A-GU-AAG|U CAG---UGGU G-AAA-UC-C GA-CAG-C(- UU-A)A-CUG -UC-G-AAC- 1321 -UGCC-AUUG A-UUC-UGCU A-GUCUU-GA GUA-----AG G-UU-GAAGU GGC-U|GGAA 1381 UA-AGUAGU- GUA-GCG(-G UGAAA)-UGC -AU-AGAU-A UU-ACUUAG- AACU-CCAA- 1441 -U-U-GC(-G AA-G)GCAG- -GUCACUA-- ---------- ---------- ---------A 1501 GUC--UU-AA CUGACG-CUG AU-G------ -------GA- C-GAAA-GC- GU-GGG-GA- 1561 UC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA U--UA-CU-- -------C|G -UU-UU-UGG -GU-U----- ---------- 1681 -(-UU-AU)- ---------- ---------- ---------- --------GA -UUCAG-AGA 1741 CU--AA---- --GC-(GAA- ---A)G-UG- AUAA-GUAAU C|C|A-CCU- G-GGGAGUAC 1801 GUU-C---(G CAA)---G-A AU-GAAACUC -AAA-GGAAU UG-ACGGG-N -N-C-CC--G 1861 C-A--CA-AU CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGAUA-C G)--CGAGGA 1921 A-CCUUA-CC AAG-AC-GGA AAU-GG|--- -------G-A ---AAUG--- -AC----AGA 1981 -UUU-A--(- GAAA-)-UAG -A-UCCU--- ---------- ---UC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GA-------- ---------| CAU-UU-UUC |---A|A--G 2161 GU-GC-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GC-C(-GUG A)-GGUGU-U 2221 AG-G-(UUAA -GU)-CCUGC AA-------- CGAG-C--GC NACCC-CU-G |-UC--ACU- 2281 AG--UUGC-U AA-CA----- ---------- ---------- ---U(---UA ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|A 2701 G-GA-CU-C- U-AGU-GA-G A-CU-G-CCU --AC(-G--C UA)-GUA-GA -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAC-G-GC-C CUUAC-G-UC -UU--GGGC- 2821 C-ACA-CA-C GUG--CUACA AUGGC-C-GG -UA--CAGAG GGC-A-G-C- UA-CCU-A(G 2881 -CGA)UAGG- ---------- AU-GCAAA-U CUCG--AAAG -CC-N-GUC- UCAGUUCGGA 2941 U-UGGAGUC- (UGCNNC-U- U)-GACUCUA -UGAAGC-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-GCA-(UC -AGCCAU)-G GCG-CGGUG- AAUAC-GU.. .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Csb.mening 4376 bp RNA RNA 02-JUL-1998 DEFINITION Chryseobacterium meningosepticum. ACCESSION No information KEYWORDS No information. SOURCE Chryseobacterium meningosepticum. ORGANISM Chryseobacterium meningosepticum. REFERENCE 1 AUTHORS Gherna,R. and Woese,C.R. TITLE A partial phylogenetic analysis of the "Flavobacter-Bacteroides" phylum: basis for taxonomic restructuring JOURNAL Syst. Appl. Microbiol. 15, 513-521 (1992) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: M58776 Former RDP Sids: F.meningos ATCC 13253 = DSM 2800 = NCTC 10016 (T) NB: former name Flavobacterium meningosepticum BASE COUNT 345 a 267 c 369 g 281 t 3114 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .....G-(-- --------GC 541 AU-------- -)-CAG---- UU-NA----U AU-UGAAA-- ---AC----- ---------- 601 --(------- ---UACG--- ---)------ ---------| -----G--U- G--GAU---- 661 ----AGAG-- AUG---G-|G CACGC----- -GC|----AA G--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAC-GG) -C-UCACN-N A|-GGC-GA- CGA------- -----UC-UU 781 U-AG-G-GG| -G-CCU--(G -AGA)-GGGU ----GA-U-- CCC-C|C-AC -ACUGG-U-A 841 (CUGA-GA-C ACG)--GACC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 AGG-AAUAUU G-GACAAU-- GG-GU-(GGA A)-GCC-UNA UCCA|-GCCA UCCC-GC-GU 961 G-C-AG-G-A A-GAC--G-G CC(C-UA-U- -G)GG-UUGU AAA--CUGC| UUUU-AU-CU 1021 --GG-GGA-- UA-AACC-UA --CNU-A--( -----CGUG- ---------) --UA-AG-UA 1081 ---------- -------G-C U-GA-AGGU- A-CCA-G-AA G-AA--UAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGNNN-A) U-A-C-GGAG |-GGUG-C-- 1201 AAG-CGUUAU CC-GGAUUUA -UU-GGGU|U UAAA-GGGU- CCG-UAG-GC -G|-GA-CU- 1261 A-GU-AAG|U CAG---UGGU G-AAA-UC-C GA-CAG-C(- UU-A)A-CUG -UC-G-AAC- 1321 -UGCC-AUUG A-UAC-UGCU N-GUCUU-GA GUA-----AG G-UU-GAAGU GGC-U|GGAA 1381 UA-AGUAGU- GUA-GCG(-G UGAAA)-UGC -AU-AGAU-A UU-ACUUAG- AACA-CCAA- 1441 -U-U-GC(-G AA-G)GCAG- -GUCACUA-- ---------- ---------- ---------A 1501 GUC--UU-AA CUGACG-CUG AU-G------ -------GA- C-GAAA-GC- GU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA U--UA-CU-- -------C|G -UU-UU-UGG -GU-U----- ---------- 1681 -(-UN-AU)- ---------- ---------- ---------- --------GA -UUCAG-AGA 1741 CU--AA---- --GC-(GAA- ---A)G-UG- AUAA-GUAAU C|C|A-CCU- G-GGGAGUAC 1801 GUU-C---(G CAA)---G-A AU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CN--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGAUA-C G)--CGAGGA 1921 A-CCUUA-CC AAG-AC-UUA AAU-GG|--- -------G-A ---AAUG--- -AC----AGA 1981 -UUU-A--(- GAAA-)-UAG -A-NCCU--- ---------- ---UC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GA-------- ---------| CAU-UU-UUC |---A|A--G 2161 GU-GC-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GC-C(-GUG A)-GGUGU-U 2221 AG-G-(UUAA -GU)-CCUGC AA-------- CGAG-C--GC AACCC-CU-G |-UC--ACU- 2281 AG--UUGC-U AA-CA----- ---------- ---------- ---N(---UA ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|A 2701 G-GA-CU-C- U-ANU-GA-G A-CU-G-CNN --NC(-G--C AA)-GUA-GA -GAGG-A-AG 2761 G-UN-GGG-A UG-ACG--UC -A-AAUC-AU CAC-G-GC-C CUUAC-G-UC -UU--GGGC- 2821 C-ACA-CA-C GUG--CUACA AUGGC-C-GG -UA--CAGAG GGC-A-G-C- UA-CCU-A(G 2881 -CGA)UAGG- ---------- AU-GCAAA-U CUCG--AAAG -CC-G-GUC- UCAGUUCGGA 2941 U-UGGAGUC- (UGCAAC-U- C)-GACUCUA -UGAAGC-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-GCA-(UC -AGCCAU)-G GCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-AAG--- --CCA-UGGA A--GC-UAG- GG-GU-ACCU -GAA-G-UCG 3121 G-U------- -GA-CCG--- ---------- ---------- -----(---- -UAAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- AGGA------ G-CU-GC-CU A-GGGU-AAA ACU-AG-UA- ACU-AGGG-C 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Csb.balus2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Chryseobacterium balustinum. ACCESSION No information KEYWORDS No information. SOURCE Chryseobacterium balustinum. ORGANISM Chryseobacterium balustinum. REFERENCE 1 AUTHORS Nakagawa,Y. and Yamasato,K. TITLE Emendation of the genus Cytophaga and transfer of Cytophaga agarovorans and Cytophaga salmonicolor to Marinilabilia gen. nov: phylogenetic analysis of the Flavobacterium-Cytophaga complex JOURNAL Int. J. Syst. Bacteriol. 46, 599-603 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: D14016|g1711219 IFO 15053 = NCTC 11212 = ATCC 33487 (T) NB: Added by Bergey's to RDP Release 6.0 tree BASE COUNT 334 a 251 c 354 g 289 t 3148 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 ....G-GG-U GCGG---AAC -AC-GUGUG- CAA--CCU-A C-CUUU---A -UCAG-G-GG 421 -GAU-AG-CC N--------- ------NU-- C(-GAAA-)G -GAAG-N--U UAAUNCC-CC 481 AU-AAU---- ---------- -------A-U AU-U--G-N- ---NNG-(-- --------GC 541 AU-------- -)-CAG---- UN-NN----N AU-UGAAA-- ---AC----- ---------- 601 --(------- ---UCCG--- ---)------ ---------| -----G--U- G--GAU---- 661 ----AGAG-- AUG---G-|G CACGC----- -GC|----AA G--AUUA-G- AUA-G---UU 721 GG-UA-GG-( GU-AAC-GG) -C-CUNCC-A A|-GUC-AG- UGA------- -----UC-UU 781 U-AG-G-GG| -G-CCU--(G -AGA)-GGGU ----NA-U-- CCN-N|C-AC -ACUGG-U-A 841 (CUGA-GA-C ACG)--GACC -AGN-C-UCC -(UACG)--G GAG-GC-AG- C-A---NU-G 901 AGG-AAUAUU G-GACAAU-- GG-GU-(GAG A)-GCC-UGA UCCA|-GCCA UCCC-GC-GU 961 G-A-AG-G-A C-GAC--G-G CC(C-UA-U- -G)GG-UUGU AAA--CUUC| UUUU-GU-AU 1021 --AG-GGA-- UA-AACC-UA --CUC-N--( -----CGUG- ---------) --AG-AG-UA 1081 ---------- -------G-C U-GA-AGGU- A-CUA-U-AC G-AA--UAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCNNC NNCGGUN-A) U-A-C-GGAG |-GGUG-C-- 1201 NAG-CGUUAU CC-GGAUUUA -UU-GGGU|U UAAA-GGGU- CCG-UAG-GC -G|-GA-UC- 1261 U-GU-AAG|U CAG---UGGU G-AAA-UC-U CA-UAG-C(- UU-A)A-CUA -UG-A-AAC- 1321 -UGCC-AUUG A-UAC-UGCA G-GUCUU-GA GUA-----AA G-UA-GAAGU GGC-U|GGAA 1381 UA-AGUAGU- GUA-GCG(-G UGAAA)-UGC -AU-AGAU-A UU-ACUUAG- AACA-CCAA- 1441 -U-U-GC(-G AA-G)GCAG- -GUCACUA-- ---------- ---------- ---------U 1501 GUU--UU-AA CUGACG-CUG AU-G------ -------GA- C-GAAA-GC- GU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGC U--AA-CU-- -------C|G -UU-UU-UGG -GC-U----- ---------- 1681 -(-UU-AG)- ---------- ---------- ---------- --------GG -UUCAG-AGA 1741 CU--AA---- --GC-(GAA- ---A)G-UG- AUAA-GUUAG C|C|A-CCU- G-GGGAGUAC 1801 GUU-C---(G CAA)---G-A AU-GAAACUC -AAA-GGAAU UG-ACGGG-N -N-C-CC--G 1861 C-A--CA-AG CGGUGG-AUU A-U-GU-GGU -UUAAUU-CG -(AUGAUA-C G)--CGAGGA 1921 A-CCUUA-CC AAG-GC-UUA AAU-GG|--- -------G-A ---AUUG--- -AC----AGG 1981 -UUU-A--(- GAAA-)-UAG -A-CNNU--- ---------- ---UC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GA-------- ---------| CAA-UU-UUC |---A|A--G 2161 GU-GC-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GC-C(-GUG A)-GGUGU-U 2221 AG-G-(UUAA -GU)-CCUGC AA-------- CGAG-C--GC AACCC-CU-G |-UC--ACU- 2281 AG--UUGC-C AU-CA----- ---------- ---------- ---U(---UC ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-GA-CU-C- U-AGU-GA-G A-CU-G-CCU --AC(-G--C AA)-GUA-GA -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAC-G-GC-C CUUAC-G-CC -UU--GGGC- 2821 C-ACA-CA-C GUA--AUACA AUGGC-C-AG -UA--CAGAG GGC-A-G-C- UA-CCA-G(G 2881 -CGA)CUGG- ---------- AU-GCGAA-U CUCG--AAAG -CU-N-GUC- UCAGUUCGGA 2941 U-UGGAGUC- (UGCAAC-U- N)-GACUCUA -UGAAGC-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-AUA-(UC -AGCCAU)-G AUG-CGGUG- AAUNC-G... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Csb.balust 4376 bp RNA RNA 02-JUL-1998 DEFINITION Chryseobacterium balustinum. ACCESSION No information KEYWORDS No information. SOURCE Chryseobacterium balustinum. ORGANISM Chryseobacterium balustinum. REFERENCE 1 AUTHORS Gherna,R. and Woese,C.R. TITLE A partial phylogenetic analysis of the "Flavobacter-Bacteroides" phylum: basis for taxonomic restructuring JOURNAL Syst. Appl. Microbiol. 15, 513-521 (1992) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: M58771 Former RDP Sids: F.balustin ATCC 33487 (T) = IFO 15053 = NCTC 11212 NB: former name Flavobacterium balustinum BASE COUNT 396 a 298 c 415 g 333 t 2934 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ NAUACAAUGG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAU -NAAC-GC-- UAGC-GGG-A -GGC-CU--A ACAC-AUGCA A-GCC-GAGC 121 G--------- -----GUAU- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---AGAU-UC (--UU----- ---------- ---------- 241 --------CG -)GA-AUCU- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --AGAG---- ---|------ AGCG-GCGU- 361 -A-CG-GG-U GCGG---AAC -AC-GUGUG- CAA--CCU-A C-CNUU---A -UCAG-G-GG 421 -GAU-AG-CC U--------- ------UU-- C(-GAAA-)G -GAAG-A--U UAAUACC-CN 481 AU-AAU---- ---------- -------A-U AU-U--G-A- ---CUG-(-- --------GC 541 AU-------- -)-CAG---- UC-GA----U AU-UGAAA-- ---AC----- ---------- 601 --(------- ---UCCG--- ---)------ ---------| -----G--U- G--GAU---- 661 ----AGAG-- AUG---G-|G CACGC----- -GC|----AA G--AUUA-G- AUA-G---UU 721 GG-UA-GG-( GU-AAC-GG) -C-CUACN-A A|-GUC-AG- UGA------- -----UC-UU 781 U-AG-G-GG| -G-CCU--(G -AGA)-GGGU ----GA-U-- CCC-N|C-AC -ACUGG-U-A 841 (CUGA-GA-C ACG)--GACC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 AGG-AAUAUU G-GACAAU-- GG-GU-(GAG A)-GCC-UNA UCCA|-GCCA UCCC-GC-GU 961 G-A-AG-G-A C-GAC--G-G CC(C-UA-U- -G)GG-UUGU AAA--CUNC| UUUU-GU-AU 1021 --AG-GGA-- UA-AACC-UN --CUC-U--( -----CGUG- ---------) --AG-AG-UA 1081 ---------- -------G-C U-GA-AGGU- A-CUA-U-AC G-AA--UAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC GNCNNNN-A) U-A-C-GGAG |-NGUG-C-- 1201 NAG-CGUUAU CC-GGAUUUA -UU-GGGU|U UAAA-GGGU- CCG-UAG-GC -G|-GA-UC- 1261 U-GU-AAG|U CAG---UGGU G-AAA-UC-U CA-UAG-C(- UU-A)A-CUA -UG-A-AAC- 1321 -UGCC-AUUG A-UAC-UGCA G-GUCUU-GA GUA-----AA G-UA-GAAGU GGC-U|GGAA 1381 UA-AGUAGU- GUA-GCG(-G UGAAA)-UGC -AU-AGAU-A UU-ACUUAG- AACA-CCAA- 1441 -U-U-GC(-G AA-G)GCAG- -GUCACUA-- ---------- ---------- ---------U 1501 GUU--UU-AA CUGACG-CUG AU-G------ -------GA- C-GAAA-GC- GU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGC U--AA-CU-- -------C|G -UU-UU-UGG -GC-U----- ---------- 1681 -(-UU-AG)- ---------- ---------- ---------- --------GG -UUCAG-AGA 1741 CU--AA---- --GC-(GAA- ---A)G-UG- AUAA-GUUAG C|N|A-CCU- G-GGGAGUAC 1801 GUU-C---(G CAA)---G-A AU-GAAACUC -AAA-GGAAU UG-ACGGG-N -N-C-CN--G 1861 C-A--CA-AG CGGUGG-AUU A-U-GU-GGU -UUAAUU-CG -(AUGAUA-C G)--CGAGGA 1921 A-CCUUA-CC AAG-GC-UUA AAU-GG|--- -------G-A ---AUUG--- -AC----AGG 1981 -UUU-A--(- GAAA-)-UAG -A-CUUU--- ---------- ---UC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GA-------- ---------| CAA-UU-UUC |---A|A--G 2161 GU-GC-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GC-C(-GUG A)-GGUGU-U 2221 AG-G-(UUAA -GU)-CCUNC AA-------- CGAG-C--GC AACCC-CU-G |-UC--ACU- 2281 AG--UUGC-C AU-CA----- ---------- ---------- ---U(---UC ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-GA-CU-C- U-AGU-GA-G A-CU-G-CNU --AC(-G--C AA)-GUA-GA -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAC-G-GC-C CUUAC-G-CC -UU--GGGC- 2821 C-ACA-CA-C GUA--AUACA AUGGC-C-AG -UA--CAGAG GGC-A-G-C- UA-CCA-G(G 2881 -CGA)CUGG- ---------- AU-GCGAA-U CUCG--AAAG -CU-N-GNC- UCAGUUCGGA 2941 U-UGGAGUC- (UGCAAC-U- C)-GACUCUA -UGAAGC-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-AUA-(UC -AGCCAU)-G AUG-CGGUG- AAUAC-GUU- CCC-NGG-CC UUGUA----C 3061 ACACCGCNC- GUC-AAG--- --CCA-UGGA A--GU-UUG- GG-GU-ACCU -GAA-G-UCG 3121 G-U------- -GA-CCG--- ---------- ---------- -----(---- -UAAC----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- AGGA------ G-CU-GC-CU A-GGGU-AAA ACA-AG-UA- ACU-AGGG-C 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Csb.indthe 4376 bp RNA RNA 02-JUL-1998 DEFINITION Chryseobacterium indoltheticum. ACCESSION No information KEYWORDS No information. SOURCE Chryseobacterium indoltheticum. ORGANISM Chryseobacterium indoltheticum. REFERENCE 1 AUTHORS Gherna,R. and Woese,C.R. TITLE A partial phylogenetic analysis of the "Flavobacter-Bacteroides" phylum: basis for taxonomic restructuring JOURNAL Syst. Appl. Microbiol. 15, 513-521 (1992) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: M58774 Former RDP Sids: F.indolthe ATCC 27950 = NCIMB 2220 (T) NB: former name Flavobacterium indoltheticum BASE COUNT 386 a 297 c 416 g 332 t 2945 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ NAUACAAUGG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAU -NAAC-GC-- UAGC-GGG-A -GGC-CU--A ACAC-AUGCA A-GCC-GAGC 121 G--------- -----GUAG- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---AAGA-UC (--UU----- ---------- ---------- 241 --------CG -)GA-UCUU- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --UGAG---- ---|------ AGCG-GCGU- 361 -A-CG-GG-U GCGG---AAC -AC-GUGUG- CAA--CCU-G C-CNUU---A -UCAG-G-GG 421 -GAU-AG-CC U--------- ------UU-- C(-GAAA-)G -GAAG-A--U UAAUACC-CN 481 AU-AAU---- ---------- -------A-U AA-U--G-A- ---GUG-(-- --------GC 541 AU-------- -)-CAC---- UU-AU----U AU-UGAAA-- ---AC----- ---------- 601 --(------- ---UCCG--- ---)------ ---------| -----G--U- G--GAU---- 661 ----AGAG-- AUG---G-|G CACGC----- -GC|----AA G--AUUA-G- AUA-G---UU 721 GG-UA-GG-( GU-AAC-GG) -C-CUACN-A A|-GUC-AG- UGA------- -----UC-UU 781 U-AG-G-GG| -G-CCU--(G -AGA)-GGGU ----GA-U-- CCC-C|C-AC -ACUGG-U-A 841 (CUGA-GA-C ACG)--GACN -NGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 AGG-AAUAUU G-GACAAU-- GG-GU-(GAG A)-GCC-UNA UCCA|-GCCA UCCC-GC-GU 961 G-A-AG-G-A C-GAC--G-G CC(C-UA-U- -G)GG-UUGU AAA--CUUC| UUUU-GU-AU 1021 --AG-GGA-- UA-AACC-UU --UCC-A--( -----CGUG- ---------) --UG-GA-AA 1081 ---------- -------G-C U-GA-AGGU- A-CUA-U-AC G-AA--UAAG ---------C 1141 -ACCGGCU-N ACUCN-GUG( CCA--GCAGC NNCGNNN-A) U-A-C-GGAG |-NGUG-C-- 1201 NAG-CGUUAU CC-GGAUUUA -UU-GGGU|U UAAA-GGGU- CCG-UAG-GC -G|-GA-UC- 1261 U-GU-AAG|U CAG---UGGU G-AAA-UC-U CA-UAG-C(- UU-A)A-CUA -UG-A-AAC- 1321 -UGCC-AUUG A-UAC-UGCA G-GUCUU-GA GUA-----AA G-UA-GAAGU GGC-U|GGAA 1381 UA-AGUAGU- GUA-GCG(-G UGAAA)-UGC -AU-AGAU-A UU-ACUUAG- AACA-CCNA- 1441 -U-U-GC(-G AA-G)GCAG- -GUCAUCA-- ---------- ---------- ---------U 1501 GUU--UU-AA CUGACG-CUG AU-G------ -------GN- C-NAAA-GC- GU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CNC- G-CC-GU--A 1621 AAC-G-AUGC U--AA-CU-- -------N|G -UU-UU-UGG -GN-U----- ---------- 1681 -(-UA-CG)- ---------- ---------- ---------- --------GA -UUCAG-AGA 1741 CU--AA---- --GC-(GAA- ---A)G-UG- AUAA-GUUAG C|N|G-CCU- G-GGGAGUAC 1801 GUU-C---(G CAA)---G-A AU-GAAACUC -AAA-GGAAU UG-ACGGG-N -N-N-CC--G 1861 C-A--CA-AG CGGUGG-AUU A-U-GU-GGU -UUAAUU-CG -(AUGNUA-C G)--CGAGGA 1921 A-CCUUA-CC AAG-GC-UUA AAU-GG|--- -------G-A ---AUUG--- -AC----AGG 1981 -UUU-A--(- GAAA-)-UAG -A-CUUU--- ---------- ---UC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GA-------- ---------| CAA-UU-UUC |---A|A--G 2161 GU-GC-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GC-C(-GUG A)-GGUGU-U 2221 AG-G-(UUAA -GU)-CCUGC AA-------- CGAG-C--GC AACCC-CU-G |-UC--ACU- 2281 AG--UUGC-C AU-CA----- ---------- ---------- ---U(---UC ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-GA-CU-C- U-AGU-GA-G A-CU-G-CNU --AC(-G--C AA)-GUA-GA -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAC-G-GC-C CUUAC-G-CC -UU--GGGC- 2821 C-ACA-CA-C GUA--AUACA AUGGC-C-GG -UA--CAGAG GGC-A-G-C- UA-CCU-A(G 2881 -CGA)UAGG- ---------- AU-GCGAA-U CUCG--AAAG -CC-G-GUC- UCAGUUCGGA 2941 U-UGGAGUC- (UGCAAC-U- C)-GACUCUA -UGAAGC-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-GCA-(UC -AGCCAU)-G GCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-AAG--- --CCA-UGGA A--GU-UUG- GG-GU-ACCU -GAA-G-UCG 3121 G-U------- -NA-CCG--- ---------- ---------- -----(---- -UAAC----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- AGGA------ G-CU-GC-CU A-GGGU-NAA ACA-AG-UA- AC........ 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS str.1044 4376 bp RNA RNA 02-JUL-1998 DEFINITION str. SBR1044. str. SBR1044. ACCESSION No information KEYWORDS No information. SOURCE str. SBR1044. str. SBR1044. ORGANISM str. SBR1044. REFERENCE 1 AUTHORS Bond,P.L., Hugenholtz,P., Keller,J. and Blackall,L.L. TITLE Bacterial community structures of phosphate-removing and non-phosphate-removing activated sludges from sequencing batch reactors JOURNAL Appl. Environ. Microbiol. 61 (5), 1910-1916 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X84487|g871608 isolate_name= SBR1044 BASE COUNT 102 a 85 c 124 g 83 t 3982 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... UAGC-GGG-A -GGG-CU--A ACAC-AUGCA A-GCC-GAGC 121 G--------- -----GUAU- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---UGUU-UC (--UU----- ---------- ---------- 241 --------CG -)GA-AAUG- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --AGAG---- ---|------ AGCG-GCGU- 361 -A-CG-GG-U GCGG---AAC -AC-GUGUG- CAA--CCU-G C-CUUU---A -UCUG-G-GG 421 -GAU-AG-CC U--------- ------UU-- C(-GAAA-)G -GAAG-A--U UAAUACU-CC 481 AU-AAC---- ---------- -------A-U AU-U--G-A- ---ACG-(-- --------GC 541 AU-------- -)-CGU---- UU-GA----U AU-UGAAA-- ---GC----- ---------- 601 --(------- ---UCCG--- ---)------ ---------| -----G--C- G--GAU---- 661 ----AGAG-- AUG---G-|G CACGC----- -GC|----AA G--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAC-GG) -C-UCACC-A A|-GGC-GA- UGA------- -----UC-UU 781 U-AG-G-GG| -G-GCU--(G -AGA)-GGGU ----GA-U-- CCC-C|C-AC -ACUGG-U-A 841 (CUGA-GA-C ACG)--GACC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 AGG-AAUAUU G-GUCAAU-- GG-GU-(GCA A)-GNC-UGA ACCA|-GCCA UCCC-GC-GU 961 G-A-AG-G-A C-GAC--U-G CC(C-UA-U- -G)GG-UUGU AAA--CUUC| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS str.2024 4376 bp RNA RNA 02-JUL-1998 DEFINITION str. SBR2024. str. SBR2024. ACCESSION No information KEYWORDS No information. SOURCE str. SBR2024. str. SBR2024. ORGANISM str. SBR2024. REFERENCE 1 AUTHORS Bond,P.L., Hugenholtz,P., Keller,J. and Blackall,L.L. TITLE Bacterial community structures of phosphate-removing and non-phosphate-removing activated sludges from sequencing batch reactors JOURNAL Appl. Environ. Microbiol. 61 (5), 1910-1916 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X84566|g871687 isolate_name= SBR2024 BASE COUNT 102 a 83 c 121 g 84 t 3986 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... UAGC-GGG-A -GGN-CU--N ACNN-AUGCA A-GCC-GAGC 121 G--------- -----GUAU- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---UGUU-UC (--UU----- ---------- ---------- 241 --------CG -)GA-AAUG- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --AGAG---- ---|------ AGCG-GCGU- 361 -A-CG-GG-U GCGG---AAC -AC-GUGUG- CAA--CCU-G C-CUUU---A -UCUG-G-GG 421 -GAU-AG-CC U--------- ------UU-- C(-GAAA-)G -GAAG-A--U UAAUACU-CC 481 AU-AAC---- ---------- -------A-U AU-U--G-A- ---UUG-(-- --------GC 541 AU-------- -)-CAA---- UU-AA----U AU-UGAAA-- ---GC----- ---------- 601 --(------- ---UCCG--- ---)------ ---------| -----G--C- G--GAU---- 661 ----AGAG-- AUG---G-|G CACGC----- -GC|----AA G--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAC-GG) -C-UCACC-A A|-GGC-GA- UGA------- -----UC-UU 781 U-AG-G-GG| -G-GCU--(G -AGA)-GGGU ----GA-U-- CCC-C|C-AC -ACUGG-U-A 841 (CUGA-GA-C ACG)--GACC -AGA-C-UCC -(UACG)--G GAG-GN-AG- C-A---GU-G 901 AGG-AAUAUU G-GUCAAU-- GG-GU-(GCA A)-GCC-UGA ACCA|-GCCA UCCC-GC-GU 961 G-A-AG-G-A C-GAC--U-G CC(C-UA-U- -G)GG-UUGU AAA--CUUC| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS str.2091 4376 bp RNA RNA 02-JUL-1998 DEFINITION str. SBR2091. str. SBR2091. ACCESSION No information KEYWORDS No information. SOURCE str. SBR2091. str. SBR2091. ORGANISM str. SBR2091. REFERENCE 1 AUTHORS Bond,P.L., Hugenholtz,P., Keller,J. and Blackall,L.L. TITLE Bacterial community structures of phosphate-removing and non-phosphate-removing activated sludges from sequencing batch reactors JOURNAL Appl. Environ. Microbiol. 61 (5), 1910-1916 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X84621|g871742 isolate_name= SBR2091 BASE COUNT 102 a 85 c 120 g 85 t 3984 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... UGNC-GGN-A -GGN-CU--A ACAC-AUGCA A-GCC-GAGC 121 G--------- -----GUAU- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---UGUU-UC (--UU----- ---------- ---------- 241 --------CG -)GA-AAUG- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --AGAG---- ---|------ AGCG-GCGU- 361 -A-CG-GG-U GCGG---AAC -AC-GUGUG- CAA--CCU-G C-CUUU---A -UCUG-G-GG 421 -GAU-AG-CC U--------- ------UU-- C(-GAAA-)G -GAAG-A--U UAAUACU-CC 481 AU-AAU---- ---------- -------A-U AU-U--G-A- ---UUG-(-- --------GC 541 AU-------- -)-CAA---- UU-AA----U AU-UGAAA-- ---GC----- ---------- 601 --(------- ---UCCG--- ---)------ ---------| -----G--C- G--GAU---- 661 ----AGAG-- AUG---G-|G CACGC----- -GC|----AA G--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAC-GG) -C-UCACC-A A|-GGC-GA- UGA------- -----UC-UU 781 U-AG-G-GG| -G-CCU--(G -AGA)-GGGU ----GA-U-- CCC-C|C-AC -ACUGG-U-A 841 (CUGA-GA-C ACG)--GACC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 AGG-AAUAUU G-GUCAAU-- GG-GU-(GCA A)-GCC-UGA ACCA|-GCCA UCCC-GC-GU 961 G-A-AG-G-G C-GAC--U-G CC(C-UA-U- -G)GG-UUGU AAA--CUUC| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS str.2072 4376 bp RNA RNA 02-JUL-1998 DEFINITION str. SBR2072. str. SBR2072. ACCESSION No information KEYWORDS No information. SOURCE str. SBR2072. str. SBR2072. ORGANISM str. SBR2072. REFERENCE 1 AUTHORS Bond,P.L., Hugenholtz,P., Keller,J. and Blackall,L.L. TITLE Bacterial community structures of phosphate-removing and non-phosphate-removing activated sludges from sequencing batch reactors JOURNAL Appl. Environ. Microbiol. 61 (5), 1910-1916 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X84604|g871725 isolate_name= SBR2072 BASE COUNT 103 a 86 c 120 g 84 t 3983 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... UGGC-GGG-A -GGC-UN--A CCAC-AUGCA A-GCC-GAGC 121 G--------- -----GUAU- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---UGUU-UC (--UU----- ---------- ---------- 241 --------CG -)GA-AAUG- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --AGAG---- ---|------ AGCG-GCGU- 361 -A-CG-GG-U GCGG---AAC -AC-GUGUG- CAA--CCU-A C-CUCU---A -UCUG-G-AG 421 -GAU-AG-CC U--------- ------UU-- C(-GAAA-)G -GAAG-A--U UAAUACU-CC 481 AU-AAU---- ---------- -------A-U AU-U--G-A- ---UUG-(-- --------GC 541 AU-------- -)-CAG---- UU-GA----U AU-UGAAA-- ---GC----- ---------- 601 --(------- ---UCCG--- ---)------ ---------| -----G--C- G--GAU---- 661 ----AAAG-- AUG---G-|G CACGC----- -GC|----AA G--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAC-GG) -C-UCACC-A A|-GGC-GA- UGA------- -----UC-UU 781 U-AG-G-GG| -G-NCU--(G -AGA)-GGGU ----GA-U-- CCC-C|C-AC -ACUGG-U-A 841 (CUGA-GA-C ACG)--GACC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 AGG-AAUAUU G-GUCAAU-- GG-GU-(GCA A)-GCC-UGA ACCA|-GCCA UCCC-GC-GU 961 G-A-AG-G-A C-GAC--U-G CC(C-UA-U- -G)GG-UUGU AAA--CUUC| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Rie.anatip 4376 bp RNA RNA 02-JUL-1998 DEFINITION Riemerella anatipestifer.. ACCESSION No information KEYWORDS No information. SOURCE Riemerella anatipestifer. ORGANISM Riemerella anatipestifer. REFERENCE 1 AUTHORS Ban,H.-K.K. and Chua,K.-L. TITLE Analysis of partial 16S ribosomal DNA sequences places Pasteurella anatipestifer within the Cytophaga-Flavobacterium complex JOURNAL Unpublished (1993) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: L13737 Former RDP Sids: Pas.anatip NB: former name Pasteurella anatipestifer BASE COUNT 127 a 102 c 140 g 104 t 3903 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .........U -GAAC-GC-- UAGC-GGG-A -GGC-CU--A ACAC-AUGCA A-GCC-GAGC 121 G--------- -----GUAG- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---AGUA-UC (--UC----- ---------- ---------- 241 --------CG -)GA-UACU- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --UGAG---- ---|------ AGCG-GCGU- 361 -A-CG-GG-U GCGG---AAC -AC-GUGUG- CAA--CCU-G C-CUUU---A -UCAG-A-GG 421 -GAU-AG-CC U--------- ------UU-- C(-GAAA-)G -GAAG-A--U UAAUACC-UC 481 AU-AAU---- ---------- -------A-U AC-U--G-A- ---UUG-(-- --------GN 541 AU-------- -)-CAA---- UU-AG----U AU-UGAAA-- ---GC----- ---------- 601 --(------- ---UCUG--- ---)------ ---------| -----G--C- G--GAU---- 661 ----AGAG-- AUG---G-|G CACGC----- -GC|----AA G--AUUA-G- AUA-G---UU 721 GG-UG-AG-( GU-AAC-GG) -C-UCACC-A A|-GUC-AA- UGA------- -----UC-UU 781 U-AG-G-GG| -G-CCU--(G -AGA)-GGGU ----GA-U-- CCC-C|C-AC -ACUGG-U-A 841 (CUGA-GA-C ACG)--GACC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 AGG-AAUAUU G-GACAAU-- GG-GUG(GGA A)-GCC-UGA UCCA|-GCCA UCCC-GC-GU 961 G-A-AG-G-A C-GAC--G-G CC(C-UA-U- -G)GU-UUGU AAA--CUUC| UUUU-GG-UC 1021 --AG-GGA-- UA-AACC-UA --CUC-U--( -----CGUG- ---------) --AG-GG-UA 1081 ---------- -------G-C U-GA-AGGU- A-CUG-U-AC G-AU--UAAG ---------C 1141 -ACCCGUU-A ACUC.....( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Brg.zoohel 4376 bp RNA RNA 02-JUL-1998 DEFINITION Bergeyella zoohelcum. ACCESSION No information KEYWORDS No information. SOURCE Bergeyella zoohelcum. ORGANISM Bergeyella zoohelcum. REFERENCE 1 AUTHORS Gherna,R. and Woese,C.R. TITLE A partial phylogenetic analysis of the "Flavobacter-Bacteroides" phylum: basis for taxonomic restructuring JOURNAL Syst. Appl. Microbiol. 15, 513-521 (1992) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: M93153 Former RDP Sids: Wee.zoohel ATCC 43767 = NCTC 11660 (T) NB: former name Weeksella zoohelcum BASE COUNT 386 a 298 c 427 g 334 t 2931 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ NAUACAAUGG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAU -GAAC-GC-- UAGC-GGG-A -GGC-CU--A ACAC-AUGCA A-GCC-GAGC 121 G--------- -----GGAU- ---------- ---------- ---------- ---------- 181 ---------- --------UU GUUGGUU-AG (--CU----- ---------- ---------- 241 --------UG -)CU-AACUA ACAA------ ---------- ---------- ---------- 301 ---------- ---------- ---------- --UGAG---- ---|------ AGCG-GCGU- 361 -A-CG-GG-U GCGU---AAC -AC-GUGUG- CAA--CCN-G C-NNNU---A -UCUG-G-GG 421 -GAU-AG-CC U--------- ------UU-- C(-GAAA-)G -GAAG-A--U UAAUACC-CN 481 AU-AAU---- ---------- -------A-U AU-U--G-A- ---UUG-(-- --------GC 541 AU-------- -)-CAG---- UU-AA----U AU-UGAAA-- ---GC----- ---------- 601 --(------- ---UCCG--- ---)------ ---------| -----G--C- G--GAU---- 661 ----AGAG-- AUG---G-|G CACGC----- -GU|----AA G--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAC-GG) -C-UCACN-A A|-GGC-UN- CGA------- -----UC-UU 781 U-AG-G-GG| -G-CCU--(G -AGA)-GGGU ----GA-U-- CCC-N|N-AC -ACUGG-U-A 841 (CUGA-GA-C ACG)--GACN -NGN-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 AGG-AAUAUU G-GACAAU-- GG-GU-(GAG A)-GCC-UGA UCCA|-GCCA UCCC-GC-GU 961 G-A-AG-G-A C-UAA--G-G AC(C-UA-U- -G)GU-UUGU AAA--CUUC| UUUU-AU-AC 1021 --AG-GGA-- UA-AACC-UA --CUC-U--( -----CGUG- ---------) --AG-GG-UA 1081 ---------- -------G-C U-GA-AGGU- A-CUG-U-AU G-AA--UAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CNCGGNN-A) U-A-C-GGAG |-NGUG-C-- 1201 NAG-CGUUAU CC-GGAUUUA -UU-GGGU|U UAAA-GGGU- CCG-UAG-GC -G|-GG-UC- 1261 G-AU-AAG|U CAG---UGGU G-AAA-GC-C UG-CAG-C(- UU-A)A-CUG -UA-G-AAC- 1321 -UGCC-GUUG A-UAC-UGUC G-GUCUU-GA GUG-----UA U-UU-GAGGU AGC-U|GGAA 1381 UG-AGUAGU- GUA-GCG(-G UGAAA)-UGC -AU-AGAU-A UU-ACUCAG- AACA-CCAA- 1441 -U-U-GC(-G AA-G)GCAG- -GNUACCA-- ---------- ---------- ---------A 1501 GUU--AC-AA CUGACG-CUG AU-G------ -------GA- C-NNAA-GC- GU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CU-GU--A 1621 AAC-G-AUGC U--AA-CU-- -------C|G -UU-UU-UGG -GG-U----- ---------- 1681 -(AUU-AU)- ---------- ---------- ---------- --------AC -UUCAG-AGA 1741 CC--AA---- --GC-(GAA- ---A)G-UG- AUAA-GUUAG C|C|A-CCU- G-GGGAGUAC 1801 GAA-C---(G CAA)---G-U UU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AUU A-U-GU-GGU -UUAAUU-CG -(AUNNUA-C G)--CGAGGA 1921 A-CCUUA-CC AAG-AC-UUA AAU-GG|--- -------G-A ---AUUG--- -AC----AGC 1981 -UGU-A--(- GAAA-)-UAC -G-GNUU--- ---------- ---UC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GA-------- ---------| CAA-UU-UUC |---A|A--G 2161 GU-GC-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GC-C(-GUG A)-GGUGU-U 2221 AG-N-(NUAA -GU)-CCUGN AA-------- CGAG-C--GC AACCC-CU-G |-UC--ACU- 2281 AG--UUGC-C AU-CA----- ---------- ---------- ---U(---UA ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-GA-CU-C- U-AGU-GA-G A-CU-G-CCU --AC(-G--C AA)-GUA-GA -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAC-G-GC-C NUUAC-G-UC -UU--GGGC- 2821 C-ACA-CA-C GUA--AUACA AUGGC-C-GG -UA--CAGAG GGC-A-G-C- UA-CAC-U(G 2881 -CGA)AGUG- ---------- AU-GCGAA-U CUCG--AAAG -CC-G-NNC- UCAGUUCGGA 2941 U-UGGAGUC- (UGCAAC-U- C)-GACUCUA -UGAAGC-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-GCA-(UC -AGCCAU)-G GCG-CGGUG- AAUAC-GUU- CCC-GGG-CN UUGUA----C 3061 ACACCGCCC- GUC-AAG--- --NCA-UGGA A--GU-CUG- GG-GU-ACCU -GAA-G-UCG 3121 G-U------- -GA-CCG--- ---------- ---------- -----(---- -UUAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- AGGA------ G-CU-GC-CU A-GGGU-AAA ACA-GG-UA- ACU-AGG... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Csb.indlog 4376 bp RNA RNA 02-JUL-1998 DEFINITION Chryseobacterium indologenes. ACCESSION No information KEYWORDS No information. SOURCE Chryseobacterium indologenes. ORGANISM Chryseobacterium indologenes. REFERENCE 1 AUTHORS Gherna,R. and Woese,C.R. TITLE A partial phylogenetic analysis of the "Flavobacter-Bacteroides" phylum: basis for taxonomic restructuring JOURNAL Syst. Appl. Microbiol. 15, 513-521 (1992) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: M58773 Former RDP Sids: F.indologe ATCC 29897 = RM 542 = GIFU 1347 = CDC 3716 (T) = NCTC 10796 NB: former name Flavobacterium indologenes BASE COUNT 384 a 306 c 420 g 325 t 2941 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ NAUACAAUGG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAU -NAAC-GC-- UAGC-GGG-A -GGC-CU--A ACAC-AUGCA A-GCC-GAGC 121 G--------- -----GUAG- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---AGAU-CU (--UU----- ---------- ---------- 241 --------CG -)GG-AUCU- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --UGAG---- ---|------ AGCG-GCGU- 361 -A-CG-GG-U GCGG---AAC -AC-GUGUG- CAA--CCU-G C-CNNU---A -UCUG-G-GG 421 -GAU-AG-CC U--------- ------NU-- C(-GAAA-)G -GAAG-A--U UAAUACC-CN 481 AU-AAU---- ---------- -------A-U GU-U--G-G- ---AUG-(-- --------GC 541 AU-------- -)-CAU---- UC-GA----C AU-UGAAA-- ---AC----- ---------- 601 --(------- ---UCCG--- ---)------ ---------| -----G--U- G--GAU---- 661 ----AGAG-- AUG---G-|G CACGC----- -GC|----AA G--AUUA-G- AUA-G---UU 721 GG-UG-AG-( GU-AAC-GG) -C-UCACN-A A|-GUC-UN- CGA------- -----UC-UU 781 U-AG-G-GG| -G-CCU--(G -AGA)-GGGU ----GA-U-- CCC-C|C-AC -ACUGG-U-A 841 (CUGA-GA-C ACG)--GACC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 AGG-AAUAUU G-GACAAU-- GG-GU-(GAG A)-GCC-UGA UCCA|-GCCA UCCC-GC-GU 961 G-A-AG-G-A C-GAC--G-G CC(C-UA-U- -G)GG-UUGU AAA--CUNC| UUUU-GU-AU 1021 --AG-GGA-- UA-AACC-UG --CNC-U--( -----CGUG- ---------) --AG-AG-UA 1081 ---------- -------G-C U-GA-AGGU- A-CUA-U-AC G-AA--UAAG ---------C 1141 -ACCGGCU-N ACUCC-GUG( CCA--GCAGC CNCNNNN-A) U-A-C-GGAG |-NGUG-C-- 1201 NAG-CGUUAU CC-GGAUUUA -UU-GGGU|U UAAA-GGGU- CCG-UAG-GC -G|-GA-UC- 1261 U-GU-AAG|U CAG---UGGU G-AAA-UC-U CA-CAG-C(- UU-A)A-CUG -UG-A-AAC- 1321 -UGCC-NUUG A-UAC-UGCA G-GUCUU-GA GUG-----UU G-UU-GAAGU AGC-U|GGAA 1381 UA-AGUAGU- GUA-GCG(-G UGAAA)-UGC -AU-AGAU-A UU-ACUUAG- AACA-CCAA- 1441 -U-U-GC(-G AA-G)GCAG- -GUUACUA-- ---------- ---------- ---------A 1501 GCA--AC-AA CUGACG-CUG AU-G------ -------GA- C-NAAA-GC- GU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGC U--AA-CU-- -------C|G -UU-UU-UGG -GC-U----- ---------- 1681 -(-UU-CG)- ---------- ---------- ---------- --------GG -UUCAG-AGA 1741 CU--AA---- --GC-(GAA- ---A)G-UG- AUAA-GUUAG C|C|A-CCU- G-GGGAGUAC 1801 GAA-C---(G CAA)---G-U UU-GAAACUC -AAA-GGAAU UG-ACGGN-N -N-C-CN--G 1861 C-A--CA-AG CGGUGG-AUU A-U-GU-GGU -UUAAUU-CG -(AUNNUA-C G)--CGAGGA 1921 A-CCUUA-CC AAG-GC-UUA AAU-GG|--- -------G-A ---AAUG--- -AC----AGG 1981 -UUU-A--(- GAAA-)-UAG -A-CNUU--- ---------- ---UC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GA-------- ---------| CAU-UU-UUC |---A|A--G 2161 GU-GC-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GC-C(-GUG A)-GGUGU-U 2221 AG-N-(UUAA -GU)-CCUNC AA-------- CGAG-C--GC AACCC-CU-G |-UC--ACU- 2281 AG--UUGC-C AU-CA----- ---------- ---------- ---U(---UA ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-GA-CU-C- U-AGU-GA-G A-CU-G-CCU --AC(-G--C AA)-GUA-GA -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAC-G-GC-C CUUAC-G-CC -UU--GGGC- 2821 C-ACA-CA-C GUA--AUACA AUGGC-C-GG -UA--CAGAG GGC-A-G-C- UA-CAC-A(G 2881 -CGA)UGUG- ---------- AU-GCAAA-U CUCG--AAAG -CC-G-GNC- UCAGUUCGGA 2941 U-UGGAGUC- (UGCAAC-U- C)-GACUCUA -UGAAGC-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-GCA-(UC -AGCCAU)-G GCG-CGGUG- AAUAC-GUU- CCC-GGG-CN UUGUA----C 3061 ACACCGCNC- GUC-AAG--- --CCA-UGGA A--GU-CUG- GG-GU-ACCU -GAA-G-UCG 3121 G-U------- -GA-CCG--- ---------- ---------- -----(---- -UAAC----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- AGGA------ G-CU-GC-CU A-GGGU-AAA ACA-GG-UA- ACU-AGGG.. 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Csb.gleum 4376 bp RNA RNA 02-JUL-1998 DEFINITION Chryseobacterium gleum str. F93 ATCC 35910. ACCESSION No information KEYWORDS No information. SOURCE Chryseobacterium gleum str. F93 ATCC 35910. ORGANISM Chryseobacterium gleum. REFERENCE 1 AUTHORS Gherna,R. and Woese,C.R. TITLE A partial phylogenetic analysis of the "Flavobacter-Bacteroides" phylum: basis for taxonomic restructuring JOURNAL Syst. Appl. Microbiol. 15, 513-521 (1992) STANDARD No information COMMENTS Organism information Culture collection: ATCC 35910 Sequence information (bases 1 to 4376) Corresponding GenBank entry: M58772 Former RDP Sids: F.gleum ATCC 35910 = NCTC 11432 (T) = IFO 15054 isolate_name= F93 NB: former name Flavobacterium gleum BASE COUNT 385 a 303 c 416 g 324 t 2948 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ NNNACAAUGG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAU -NAAC-GC-- UAGC-GGG-A -GGC-CU--A ACAC-AUGCA A-GCU-GAGC 121 G--------- -----GUAG- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---AGAU-CU (--UU----- ---------- ---------- 241 --------CG -)GG-AUCU- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --UGAG---- ---|------ AGCG-GCGU- 361 -A-CG-GG-U GCGG---AAC -AC-GUGUG- CAA--CCU-G C-CNUU---A -UCAG-G-GG 421 -GAU-AG-CC U--------- ------NU-- C(-GAAA-)G -GAAG-A--U UAAUACC-CN 481 AU-AAU---- ---------- -------A-U AU-U--G-A- ---GUG-(-- --------GC 541 AU-------- -)-CAC---- UU-AA----U AU-UGAAA-- ---AC----- ---------- 601 --(------- ---UCCG--- ---)------ ---------| -----G--U- G--GAU---- 661 ----AGAG-- AUG---G-|G CACGC----- -GC|----AA G--AUUA-G- AUA-G---UU 721 GG-UG-AG-( GU-AAC-GG) -C-UCACN-A A|-GUC-UN- CGA------- -----UC-UU 781 U-AG-G-GG| -G-CCU--(G -AGA)-GGGU ----GA-U-- CCC-C|N-AC -ACUGG-U-A 841 (CUGA-GA-C ACG)--GACC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 AGG-AAUAUU G-GACAAU-- GG-GU-(GCG A)-GCC-UNA UCCA|-GCCA UCCC-GC-GU 961 G-A-AG-G-A C-GAC--G-G CC(C-UA-U- -G)GG-UUGU AAA--CUUC| UUUU-GU-AU 1021 --AG-GGA-- UN-AACC-UN --CUC-U--( -----CGUG- ---------) --AG-AG-UA 1081 ---------- -------G-C U-GA-AGGU- A-CUA-U-AC G-AA--UAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CNCGNNN-A) U-A-C-GGAG |-NGUG-C-- 1201 NAG-CGUUAU CC-GGAUUUA -UU-GGGU|U UAAA-GGGU- CCG-UAG-GC -G|-GA-UC- 1261 U-GU-AAG|U CAG---UGGU G-AAA-UC-U CA-CAG-C(- UU-A)A-CUG -UG-A-AAC- 1321 -UGCC-AUUG A-UAC-UGCA G-GUCUU-GA GUG-----UU G-UU-GAAGU AGC-U|GGAA 1381 UA-AGUAGU- GUA-GCG(-G UGAAA)-UGC -AU-AGAU-A UU-ACUUAG- AACA-CCAA- 1441 -U-U-GC(-G AA-G)GCAG- -GUUACUA-- ---------- ---------- ---------A 1501 GCA--AC-AA CUGACG-CUG AU-G------ -------GA- C-NAAA-GC- GU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGC U--AA-CU-- -------C|G -UU-UU-UGG -GY-U----- ---------- 1681 -(-UU-CG)- ---------- ---------- ---------- --------GR -UUCAG-AGA 1741 CU--AA---- --GC-(GAA- ---A)G-UG- AUAA-GUUAG C|C|A-CCU- G-GGGAGUAC 1801 GAA-C---(G CAA)---G-U UU-GAAACUC -AAA-GGAAU UG-ACGGG-N -G-C-CN--G 1861 C-A--CA-AG CGGUGG-AUU A-U-GU-GGU -UUAAUU-CG -(AUNNUA-C G)--CGAGGA 1921 A-CCUUA-CC AAG-GC-UUA AAU-GG|--- -------G-A ---AAUG--- -AC----AGG 1981 -CUU-A--(- GAAA-)-UAG -G-CNNU--- ---------- ---UC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GA-------- ---------| CAU-UU-UUC |---A|A--G 2161 GU-GC-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GC-C(-GUG A)-GGUGU-U 2221 AG-N-(UNAA -GU)-CCUNC AA-------- CGAG-C--GC AACCC-CU-G |-UC--ACU- 2281 AG--UUGC-C AU-CA----- ---------- ---------- ---U(---UA ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-GA-CU-C- U-AGU-GA-G A-CU-G-CCU --AC(-G--C AA)-GUA-GA -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAC-G-GC-C CUUAC-G-CC -UU--GGGC- 2821 C-ACA-CA-C GUA--AUACA AUGGC-C-GG -UA--CAGAG GGC-A-G-C- UA-CAC-U(G 2881 -CGA)AGUG- ---------- AU-GCAAA-U CUCG--AAAG -CC-N-GUC- UCAGUUCGGA 2941 U-UGGAGUC- (UGCAAC-U- N)-GACUCUA -UGAAGC-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-GCA-(UC -AGCCAU)-G GCG-CGGUG- AAUAC-GUU- CCC-NGG-CN UUGUA----C 3061 ACACCGCNC- GUC-AAG--- --CCA-UGGA A--GU-CUN- GG-GU-ACCU -GAA-G-UCG 3121 G-U------- -GA-CCG--- ---------- ---------- -----(---- -UAAC----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- AGGA------ G-CU-GC-CU A-GGGN-AAA ACA-GG-UA- ACN-AGGG.. 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Csb.gleum2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Chryseobacterium gleum.. ACCESSION No information KEYWORDS No information. SOURCE Chryseobacterium gleum. ORGANISM Chryseobacterium gleum. REFERENCE 1 AUTHORS Yabuuchi,E., Kosako,Y., Yano,I., Hashimoto,Y., Ezaki,T. and Stackebrandt,E. TITLE Flavobacterium ogurii sp. nov. and Flavobacterium paraogurii sp. nov., two bright-orange bacteria JOURNAL Unpublished (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X67852|g887435 Former RDP Sids: F.gleum2 NB: former name Flavobacterium gleum BASE COUNT 189 a 130 c 195 g 150 t 3712 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... ........GG 421 -GAU-AG-CC U--------- ------UU-- C(-GAAA-)G -GAAG-A--U UAAUCCC-CC 481 AU-AAU---- ---------- -------A-U AU-U--G-A- ---GUG-(-- --------GC 541 AU-------- -)-CAC---- UU-AA----U AU-UGAAA-- ---AC----- ---------- 601 --(------- ---UCCG--- ---)------ ---------| -----G--U- G--GAU---- 661 ----AGAA-- AUG---G-|G AACGC----- -GC|----AA G--AUUA-G- AUA-G---UU 721 GG-UG-AG-( GU-AAC-GG) -C-UCACC-A A|-GUC-UA- CGA------- -----UC-UU 781 U-AG-G-GG| -G-CCU--(G -AGA)-GGGN ----GA-U-- CCC-C|C-AC -ACUGG-U-A 841 (CUGA-GA-C ACG)--GACC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 AGG-AAUAUU G-GACAAU-- GG-GU-(GCG A)-GCC-UGA UCCA|-GCCA U......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... ........A) U-A-C-GGAG |-GGUG-C-- 1201 CAG-CGUUAU CC-GGAUUUA -UU-GGGU|U UAAA-GGGU- CCG-UAG-GC -G|-GA-UC- 1261 U-GU-AAG|U CAG---UGGU G-AAA-UC-U CA-CAG-C(- UU-A)A-CUG -UG-A-AAC- 1321 -UGCC-AUUG A-UAC-UGCA G-GUCUU-GA GUG-----UU G-UU-GAAGU AGC-U|GGAA 1381 UA-AGUAGU- GUA-GCG(-G UGAAA)-UGC -AU-AGAU-A UG-UCUUAG- AACA-CCAA- 1441 -U-U-GC(-G AA-G)GCAG- -GUUACUA-- ---------- ---------- ---------A 1501 GCA--AC-AA CUGACG-CUG AU-G------ -------CA- C-GAAA-GC- GU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-CU--A 1621 AAC-G-AUGC U--GA-CU-- -------C|G -UU-UU-UGG -CC-U----- ---------- 1681 -(-UU-CG)- ---------- ---------- ---------- --------GG -UUCAG-AGA 1741 CU--AA---- --GC-(GAA- ---A)G-UG- AUAA-GUUAG C|C|A-CCU- G-GGGAGUAC 1801 GCA-A---(G CAA)---G-U UU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-A.. .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Csb.indlo2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Chryseobacterium indologenes.. ACCESSION No information KEYWORDS No information. SOURCE Chryseobacterium indologenes. ORGANISM Chryseobacterium indologenes. REFERENCE 1 AUTHORS Yabuuchi,E., Kosako,Y., Yano,I., Hashimoto,Y., Ezaki,T. and Stackebrandt,E. TITLE Flavobacterium ogurii sp. nov. and flavobacterium paraogurii sp. nov., two bright-orange bacteria JOURNAL Unpublished (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X67848|g887436 Former RDP Sids: F.indolog2 NB: former name Flavobacterium indologenes BASE COUNT 186 a 130 c 198 g 149 t 3713 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... ........GG 421 -GAU-AG-CC U--------- ------UU-- C(-GAAA-)G -GAAG-A--U UAAUACC-CC 481 AU-AAU---- ---------- -------A-U GU-U--G-G- ---AUG-(-- --------GC 541 AU-------- -)-CAU---- UC-GA----C AU-UGAAA-- ----C----- ---------- 601 --(------- ---UCCG--- ---)------ ---------| -----G--U- G--GAU---- 661 ----AGAG-- AUG---G-|G CACGC----- -GC|----AA G--AUUA-G- AUA-G---UU 721 GG-UG-AG-( GU-AAC-GG) -C-UCACC-A A|-GUC-UA- CGA------- -----UC-UU 781 U-AG-G-GG| -G-CCU--(G -AGA)-GGGN ----GA-U-- CCC-C|C-AC -ACUGG-U-A 841 (CUGA-GA-C ACG)--GACC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 AGG-AAUAUU G-GACAAU-- GG-GU-(GAG A)-GCC-UGA UCCA|-GCCA U......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... ........A) U-A-C-GGAG |-GGUG-C-- 1201 CAG-CGUUAU CC-GGAUUUA -UU-GGGU|U UAAA-GGGU- CCG-UAG-GC -G|-GA-UC- 1261 U-GU-AAG|U CAG---UGGU G-AAA-UC-U CA-CAG-C(- UU-A)A-CUG -UG-A-AAC- 1321 -UGCC-AUUG A-UAC-UGCA G-GUCUU-GA GUG-----UU G-UU-GAAGU AGC-U|GGAA 1381 UA-AGUAGU- GUA-GCG(-G UGAAA)-UGC -AU-AGAU-A UG-UCUUAG- AACA-CCAA- 1441 -U-U-GC(-G AA-G)GCAG- -GUUACUA-- ---------- ---------- ---------A 1501 GCA--AC-AA CUGACG-CUG AU-G------ -------CA- C-GAAA-GC- GU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-CU--A 1621 AAC-G-AUGC U--GA-CU-- -------C|G -UU-UU-UGG -CC-U----- ---------- 1681 -(-UU-CG)- ---------- ---------- ---------- --------GG -UUCAG-AGA 1741 CU--AA---- --GC-(GAA- ---A)G-UG- AUAA-GUUAG C|C|A-CCU- G-GGGAGUAC 1801 GCA-A---(G CAA)---G-U UU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-A.. .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS F.progurii 4376 bp RNA RNA 02-JUL-1998 DEFINITION Flavobacterium paraogurii.. ACCESSION No information KEYWORDS No information. SOURCE Flavobacterium paraogurii. ORGANISM Flavobacterium paraogurii. REFERENCE 1 AUTHORS Yabuuchi,E., Kosako,Y., Yano,I., Hashimoto,Y., Ezaki,T. and Stackebrandt,E. TITLE Flavobacterium ogurii sp. nov. and flavobacterium paraogurii sp. nov., two bright-orange bacteria JOURNAL Unpublished (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X67850|g887438 BASE COUNT 188 a 130 c 197 g 150 t 3711 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... ........GG 421 -GAU-AG-CC U--------- ------UU-- C(-GAAA-)G -GGAG-A--U UAAUCCC-CC 481 AU-AAU---- ---------- -------A-U AU-U--U-A- ---UCG-(-- --------GC 541 AU-------- -)-CGA---- UG-AA----U AU-UGAAA-- ---AC----- ---------- 601 --(------- ---UCCG--- ---)------ ---------| -----G--U- G--GAU---- 661 ----AGAG-- AUG---G-|G CACGC----- -GC|----AA G--AUUA-G- AUA-G---UU 721 GG-UG-AG-( GU-AAC-GG) -C-UCACC-A A|-GUC-UA- CGA------- -----UC-UU 781 U-AG-G-GG| -G-CCU--(G -AAA)-GGGN ----GA-U-- CCC-C|C-AC -ACUGG-U-A 841 (CUGA-GA-C ACG)--GACC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 AGG-AAUAUU G-GACAAU-- GG-GU-(GAG A)-GCC-UGA UCCA|-GCCA U......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... ........A) U-A-C-GGAG |-GGUG-C-- 1201 CAG-CGUUAU CC-GGAUUUA -UU-GGGU|U UAAA-GGGU- CCG-UAG-GC -G|-GA-UC- 1261 U-GU-AAG|U CAG---UGGU G-AAA-UC-U CA-CAG-C(- UU-A)A-CUG -UG-A-AAC- 1321 -UGCC-AUUG A-UAC-UGCA G-GUCUU-GA GUG-----UU G-UU-GAAGU AGC-U|GGAA 1381 UA-AGUAGU- GUA-GCG(-G UGAAA)-UGC -AU-AGAU-A UG-UCUUAG- AACA-CCAA- 1441 -U-U-GC(-G AA-G)GCAG- -GUUACUA-- ---------- ---------- ---------A 1501 GCA--AC-AA CUGACG-CUG AU-G------ -------CA- C-GAAA-GC- GU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-CU--A 1621 AAC-G-AUGC U--GA-CU-- -------C|G -UU-UU-UGG -CC-U----- ---------- 1681 -(-UU-CG)- ---------- ---------- ---------- --------GG -UUCAG-AGA 1741 CU--AA---- --GC-(GAA- ---A)G-UG- AUAA-GUUAG C|C|A-CCU- G-GGGAGUAC 1801 GCA-A---(G CAA)---G-U UU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGGUGGA.. .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS F.ogurii 4376 bp RNA RNA 02-JUL-1998 DEFINITION Flavobacterium ogurii.. ACCESSION No information KEYWORDS No information. SOURCE Flavobacterium ogurii. ORGANISM Flavobacterium ogurii. REFERENCE 1 AUTHORS Yabuuchi,E., Kosako,Y., Yano,I., Hashimoto,Y., Ezaki,T. and Stackebrandt,E. TITLE Flavobacterium ogurii sp. nov. and flavobacterium paraogurii sp. nov., two bright-orange bacteria JOURNAL Unpublished (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X67849|g887437 BASE COUNT 219 a 148 c 222 g 177 t 3610 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... ........GG 421 -GAU-AG-CC U--------- ------UU-- C(-GAAA-)G -GAAG-A--U UAAUCCC-CC 481 AU-AAU---- ---------- -------A-U AA-G--A-A- ---ACG-(-- --------GC 541 AU-------- -)-CGU---- UU-UU----U AU-UGAAA-- ---AC----- ---------- 601 --(------- ---UCCG--- ---)------ ---------| -----G--U- G--GAU---- 661 ----AGAG-- AUG---G-|G CACGC----- -GC|----AA G--AUUA-G- AUA-G---UU 721 GG-UG-AG-( GU-AAC-GG) -C-UCACC-A A|-GUC-UA- CGA------- -----UC-UU 781 U-AG-G-GG| -G-CCU--(G -AGA)-GGGN ----GA-U-- CCC-C|C-AC -ACUGG-U-A 841 (CUGA-GA-C ACG)--GACC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 AGG-AAUAUU G-GACAAU-- GG-GU-(GAG A)-GCC-UNA UCCA|-GCCA UGCC-GC-GU 961 G-C-AG-G-A U-GAC--U-G CC(C-UA-U- -G)GG-UUGU AAA--CUGC| UUUU-GU-AU 1021 --AG-GGA-- UA-AACC-UN --NNN-U--( -----NGUG- ---------) --AG-GG-NA 1081 ---------- -------G-C U-GA-AGGU- A-CUA-U-AC G-AA--UAAG ---------C 1141 -ACCGGCU-A AC.......( .......... ........A) U-A-C-GGAG |-GGUG-C-- 1201 CAG-CGUUAU CC-GGAUUUA -UU-GGGU|U UAAA-GGGU- CCG-UAG-GC -G|-GA-UU- 1261 U-GU-AAG|U CAG---UGGU G-AAA-UC-U CA-CAG-C(- UU-A)A-CUG -UG-A-AAC- 1321 -UGCC-AUUG A-UAC-UGCA A-GUCUU-GA GUG-----UU G-UU-GAAGU AGC-U|GGAA 1381 UA-AGUAGU- GUA-GCG(-G UGAAA)-UGC -AU-AGAU-A UG-UCUUAG- AACA-CCAA- 1441 -U-U-GC(-G AA-G)GCAG- -GUUACUA-- ---------- ---------- ---------A 1501 GCA--AC-AA CUGACG-CUG AU-G------ -------CA- C-GAAA-GC- GU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-CU--A 1621 AAC-G-AUGC U--GA-CU-- -------C|G -UU-UU-UGG -CC-U----- ---------- 1681 -(-UU-UA)A ---------- ---------- ---------- --------GA -UUCAG-AGA 1741 CU--AA---- --GC-(GAA- ---A)G-UG- AUAA-GUUAG C|C|A-CCU- G-GGGAGUAC 1801 GCU-U---(G CAA)---G-A AU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-A.. .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS 2.7.1.2.3 4376 bp RNA RNA 09-JAN-1999 DEFINITION 2.7.1.2.3 BLATTABACTERIUM_SUBGROUP. ACCESSION No information KEYWORDS No information. SOURCE 2.7.1.2.3 BLATTABACTERIUM_SUBGROUP. ORGANISM 2.7.1.2.3 BLATTABACTERIUM_SUBGROUP. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 0 a 0 c 0 g 0 t 4376 others ORIGIN 1 x~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~-- ------~~~~ 541 ~~~~~~---- -~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~---~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- 1681 -(~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- -------~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~----~~~ 1981 ~~~~-~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~--- --~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~------ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~---~~ ---~~~--~~ 2341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- 3181 ---------- ---------- ---------- ------~)~~ ~~~~~~~~~~ ~~~~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Blt.sp3 4376 bp RNA RNA 02-JUL-1998 DEFINITION Blattabacterium sp.. ACCESSION No information KEYWORDS No information. SOURCE Blattabacterium sp. ORGANISM Blattabacterium sp. REFERENCE 1 AUTHORS Bandi,C., Damiani,G., Magrassi,L., Grigolo,A., Fani,R. and Sacchi,L. TITLE Flavobacteria as intracellular symbionts in cockroaches JOURNAL Proc. R. Soc. Lond., B, Biol. Sci. 257, 43-48 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X75625|g516193 endosymbiont_of= Periplaneta americana BASE COUNT 413 a 275 c 409 g 345 t 2934 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .........U -GAAC-GU-- UAGC-GGC-G -GGC-UU--A ACAC-AUGCA A-GUC-GAGG 121 G--GC-AA-C AU-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- GAGGUCU-AU (--AU----- ---------- ---------- 241 --------UU -)UU-AGAUU UC-------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- AUG|-GC--G ACCG-GCGA- 361 -A-CG-GG-U GCGU---AAC -AC-GUACG- UAA--CUU-A C-CUUU---U -GCUA-G-AA 421 -AAU-AG-CC U--------- ------GA-- G(-GAAA-)C -UUGG-A--U UAAUAUU-CU 481 AU-AAC---- ---------- -------A-U AG-U--A-UU ---AUU-(-- --------GC 541 AU-------- -)-GAU---A AU-AU----U AU--UAAA-- ---GCA---- ---------- 601 --(------- ---GAUA--- ---)------ ---------| ----UG--C- G--GCA---- 661 ----AAAG-- AUA---G-|G CGUGC----- -GU|----CU G--AUUA-G- UUA-G---UU 721 GG-UA-GG-( GU-AAA-AG) -C-CUACA-A A|-GAC-AA- UGA------- -----UC-GG 781 U-AG-G-GG| -G-CCU--(G -AGA)-GGGU ----GA-U-- CCC-C|C-AC -ACUGG-U-A 841 (CUGA-GA-U ACG)--GACC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 AGG-AAUAUU G-GUCAAU-- GG-AG-(GAA A)-CUC-UGA ACCA|-GCCA CGCC-GC-GU 961 G-C-AG-G-A A-GAA--G-G CC(C-UA-U- -G)GG-UUGU AAA--CGGC| UUUU-GU-AU 1021 --AG-GAA-- UA-AAAA-UU --CUU-A--( -----CGAGA ---------) --UA-AG-AA 1081 ---------- -------U-C AUGA-AGGU- A-CUA-U-AC G-AA--UAAG ---------U 1141 -GUCGGCA-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GACA-C-- 1201 AAG-CGUUAU CC-GGAUUUA -UU-GGGU|U UAAA-GGGU- GCG-UAG-GC -G|-GU-UU- 1261 A-UU-AAG|U CAG---UAGU G-AAA-UG-U UG-CAG-C(- UU-A)A-CUG UUA-A-AAU- 1321 -GGCU-AUUG A-UAC-UGAU A-AGCUG-GA GUG-----AG A-UU-GGAGU AGC-U|GGAA 1381 UG-UGUGGU- GUA-GCG(-G UGAAA)-UGC -UU-AGAU-A UC-ACACAG- AACA-CCGA- 1441 -U-C-GC(-G AA-A)GCAG- -GUUACUA-- ---------- ---------- ---------A 1501 GUC--UA-UA CUGACG-CUG AG-G------ -------CA- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA U--CA-CU-- -------A|G -UU-GU-UGG -AU------- ---------- 1681 -(UUU-UU)- ---------- ---------- ---------- ---------A -UUCAG-CGG 1741 CU--AA---- --GC-(GAA- ---A)G-UG- AUAA-GUGAU C|C|A-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-G CU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG C-GUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGAUA-C G)--CGAGGA 1921 A-CCUUA-CC AAG-GU-UUA AAU-GU|--- -------G-C ---UGCG--- -AA----UAA 1981 -GCU-A--(- GAAA-)-UAG -U-UUAG--- ---------- ---UC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GA-------- ---------| CGG-AG-UAC |---A|A--G 2161 AU-GC-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GC-C(-GUG A)-GGUGU-U 2221 GG-G-(UUAA -GU)-CCCUC AA-------- CGAG-C--GC AACCC-UU-G |-UU--GUU- 2281 AG--UUGC-C AG-CGA---- ---------- ---------- ---G(---UA ---AAG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----UCG|G 2701 G-GA-CU-C- U-AAC-AA-G A-CU-G-CCG --AC(-G--U AA)-GUC-GA -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAC-G-GC-U CUUAU-G-CC -UU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGU-C-GG -UA--CAAAG GGUCUUG-C- UA-CUG-G(G 2881 -UAA)UCAG- ---------- AA-GCUAA-U CUCUA-AAAG -CC-G-AUC- UCAGUUCGGA 2941 U-UGGAGUC- (UGCAAC-U- C)-GACUCUA -UGAAGU-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-AUA-(UC -AGCCAU)-G AUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCRCCC- GUC-AAG--- --CCA-UGGA A--GU-CGG- GG-GG-ACCU -GAA-A-UCG 3121 G-U------- -GA-CC---- ---------- ---------- -----(---- GUAAAA---- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGA------ A-CU-GC-UU A-AGGU-AAA A......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Blt.sp4 4376 bp RNA RNA 02-JUL-1998 DEFINITION Blattabacterium sp.. ACCESSION No information KEYWORDS No information. SOURCE Blattabacterium sp. ORGANISM Blattabacterium sp. REFERENCE 1 AUTHORS Bandi,C., Damiani,G., Magrassi,L., Grigolo,A., Fani,R. and Sacchi,L. TITLE Flavobacteria as intracellular symbionts in cockroaches JOURNAL Proc. R. Soc. Lond., B, Biol. Sci. 257, 43-48 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X75624|g516144 endosymbiont_of= Periplaneta australasiae BASE COUNT 417 a 274 c 404 g 344 t 2937 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .........U -GANC-GU-- UNGN-GGN-G -GGC-UU--A ACAC-AUGCA A-GUC-GAGG 121 G--GC-AA-C AU-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- AAGAUCU-AU (--GU----- ---------- ---------- 241 --------UA -)UU-AGAUC UC-------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- AUG|-GC--G ACCG-GCGA- 361 -A-CG-GG-U GCGU---AAU -AC-GUACG- UAA--CUU-U C-CUUU---U -GCUA-G-AA 421 -AAU-AG-CC U--------- ------GA-- G(-GAAA-)C -UCGG-A--U UAAUGUU-CU 481 AU-AAU---- ---------- -------A-U AG-U--A-UU ---AUU-(-- --------GC 541 AU-------- -)-GAU---A AU-AU----U AU--UAAA-- ---GCA---- ---------- 601 --(------- ---GAAA--- ---)------ ---------| ----UG--C- G--GCA---- 661 ----AAAG-- AUA---G-|G CGUAC----- -GU|----CU G--AUUA-G- UUA-G---UU 721 GG-UA-GG-( GU-AAA-AG) -C-CUACA-A A|-GAC-AA- UGA------- -----UC-GG 781 U-AG-G-GG| -G-CCU--(G -AGA)-GGGU ----GA-U-- CCC-C|C-AC -ACUGG-U-A 841 (CUGA-GA-U ACG)--GACC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 AGG-AAUAUU G-GUCAAU-- GG-AG-(GAA A)-CUC-UGA ACCA|-GCCA CGCC-GC-GU 961 G-C-AG-G-A A-GAA--G-G CC(C-UA-U- -G)GG-UUGU AAA--CUGC| UUUU-GU-AU 1021 --AG-GAA-- UA-AAAA-UU --CUU-A--( -----CGAGA ---------) --UA-AG-AA 1081 ---------- -------U-C GUGA-AAGU- A-CUA-U-AC G-AA--UAAG ---------U 1141 -GUCGGCA-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GACA-C-- 1201 AAG-CGUUAU CC-GGAUUUA -UU-GGGU|U UAAA-GGGU- GCG-UAG-GC -G|-GU-UU- 1261 A-UU-AAG|U CAG---UAGU G-AAA-UA-U UG-CAG-C(- UU-A)A-CUG UUA-A-AAU- 1321 -GGCU-AUUG A-UAC-UGAU A-AGCUA-GA GUG-----AG A-UU-GGAGU AAC-U|GGAA 1381 UG-UGUGGU- GUA-GCG(-G UGAAA)-UGC -UU-AGAU-A UC-ACACAG- AACA-CCGA- 1441 -U-C-GC(-G AA-A)GCAG- -GUUACUA-- ---------- ---------- ---------A 1501 GUC--UA-UA CUGACG-CUG AG-G------ -------CA- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA U--CA-CU-- -------A|G -UU-GU-UGG -AU------- ---------- 1681 -(UUU-UU)- ---------- ---------- ---------- ---------A -UUCAG-CGG 1741 CU--AA---- --GC-(GAA- ---A)G-UG- AUAA-GUGAU C|C|A-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-G CU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG C-GUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGAUA-C G)--CGAGGA 1921 A-CCUUA-CC AAG-GU-UUA AAU-GU|--- -------A-C ---UGCG--- -AA----UAA 1981 -GCU-A--(- GAAA-)-UAG -U-UUAG--- ---------- ---UC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GA-------- ---------| CGG-AG-UAC |---A|A--G 2161 AU-GC-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GC-C(-GUG A)-GGUGU-U 2221 GG-G-(UUAA -GU)-CCCUC AA-------- CGAG-C--GC AACCC-UU-G |-UU--GUU- 2281 AG--UUGC-C AG-CGA---- ---------- ---------- ---G(---UA ---AAG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----UCG|G 2701 G-GA-CU-C- U-AAC-AA-G A-CU-G-CCG --AC(-G--U AA)-GUC-GA -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAC-G-GC-U CUUAU-G-CC -UU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGU-C-GG -UA--CAAAG GGUCUUG-C- UA-CUG-G(G 2881 -CAA)UCAG- ---------- AA-GCUAA-U CUCUA-AAAG -CC-G-AUC- UCAGUUCGGA 2941 U-UGGAGUC- (UGCAAC-U- C)-GACUCUA -UGAAGU-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-AUA-(UC -AGCCAU)-G AUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-AAG--- --CCA-UGGA A--GU-CGG- GG-GG-ACCU -GAA-A-UCG 3121 G-U------- -GA-CC---- ---------- ---------- -----(---- GUAAAA---- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGA------ A-CU-GC-UU A-AGGU-AAA A......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Blt.sp6 4376 bp RNA RNA 02-JUL-1998 DEFINITION Blattabacterium sp.. ACCESSION No information KEYWORDS No information. SOURCE Blattabacterium sp. ORGANISM Blattabacterium sp. REFERENCE 1 AUTHORS Bandi,C., Sironi,M., Damiani,G., Magrassi,L., Nalepa,C.A., Laudani,U. and Sacchi,L. TITLE The establishment of intracellular symbiosis in an ancestor of cockroaches and termites JOURNAL Proc. R. Soc. Lond. B 259, 293-299 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: Z35664|g790979 BASE COUNT 426 a 275 c 396 g 347 t 2932 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... ....C-GU-- UAGC-GGC-G -GGN-UU--A ACAC-AUGCA A-GUC-GAGG 121 G--GC-AG-C AU-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- GAAAUUU-AU (--UU----- ---------- ---------- 241 --------AU -)UU-AGAUU UU-------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- AUG|-GC--G ACCG-GCGG- 361 -A-CG-GG-U GCGU---AAC -AC-GUAUG- UAA--CCU-A C-CUUU---U -UCUA-G-AA 421 -AAU-AG-CC U--------- ------GA-- G(-GAAA-)C -UCGG-A--U UAAUGUU-CU 481 AU-AAU---- ---------- -------A-C AG-U--A-UU ---UUC-(-- --------GC 541 AU-------- -)-GAA---A AU-AU----U AU--UAAA-- ---GCA---- ---------- 601 --(------- ---GAAA--- ---)------ ---------| ----UG--C- G--GAA---- 661 ----AAAG-- AUG---G-|G CAUGC----- -G-|----CC G--AUUA-G- UUA-G---UU 721 GG-UG-GG-( GU-AAA-AG) -C-CUACC-A A|-GAC-GA- UGA------- -----UC-GG 781 U-AG-G-GG| -G-CCU--(G -AGA)-GGGU ----GA-U-- CCC-C|C-AC -ACUGG-U-A 841 (CUGA-GA-U ACG)--GACC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 AGG-AAUAUU G-GUCAAU-- GG-AG-(GAA A)-CUC-UGA ACCA|-GCCA CGCC-GC-GU 961 G-C-AG-G-A A-GAA--U-G CC(U-UA-U- -G)GG-UUGU AAA--CUGC| UUUU-GU-UU 1021 --AG-GAA-- UA-AAAA-UU --UCU-A--( -----CGUGA ---------) --UA-AA-AA 1081 ---------- -------U-U CUGA-AGGU- A-CUA-G-AC G-AA--UAAG ---------U 1141 -GUCGGCA-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GACA-C-- 1201 AAG-CGUUAU CC-GGAUUUA -UU-GGGU|U UAAA-GAGU- GCG-UAG-GC -G|-GU-UU- 1261 A-UU-AAG|U CAG---UAGU G-AAA-UG-U UA-CAG-C(- UU-A)A-CUG UUA-A-AAU- 1321 -GGCU-AAUG A-UAC-UGAU A-GACUU-GA GUU-----AG A-UU-GGAGU AAC-U|GGAA 1381 UG-UGUGGU- GUA-GCG(-G UGAAA)-UGC -AU-AGAG-A UC-ACACAG- AACA-CCGA- 1441 -U-C-NC(-N AA-A)GCAG- -GUUACUA-- ---------- ---------- ---------A 1501 AUU--UA-UA CUGACG-CUG AG-G------ -------CA- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ---GGGUAGG UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA U--CA-CU-- -------A|G -UC-GU-UGG -AU------- ---------- 1681 -(UUU-AU)U ---------- ---------- ---------- ---------A -UUCAG-UGG 1741 CU--AA---- --GC-(GAA- ---A)G-UG- AUAA-GUGAU C|C|A-CCU- G-GGGAGUAC 1801 GAC-C---(G CAA)---G-G UU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG C-GUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGAUA-C G)--CGAGGA 1921 A-CCUUA-CC AAG-GU-UUA AAU-GU|--- -------A-C ---UACG--- -AA----UAA 1981 -GCU-A--(- GAAA-)-UAG -U-UUAG--- ---------- ---UC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GA-------- ---------| CGG-AG-UAC |---A|A--G 2161 AU-GC-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GC-C(-GUG A)-GGUGU-U 2221 GG-G-(UUAA -GU)-CCCUC AA-------- CGAG-C--GC AACCC-UC-A |-UU--GUU- 2281 AG--UUGC-C AA-CGA---- ---------- ---------- ---A(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----UCG|G 2701 G-GA-CU-C- U-AGC-AA-G A-CU-G-CCG --AC(-G--U AA)-GUC-GA -GAGG-A-AG 2761 G-UG-GGG-A CG-ACG--UC -A-AAUC-AU CAC-G-GC-U CUUAU-A-UC -UU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGU-C-GG -UA--CAAAG GGU-U-G-C- UA-CUG-A(G 2881 -CAA)UCAG- ---------- AA-GCUAA-U CUCUA-AAAA -CC-G-AUC- UCAGUUCGGA 2941 U-UGGAGUC- (UGCAAC-U- C)-GACUCUA -UGAAGU-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-AUA-(UC -AGCCAU)-G AUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-AAG--- --CCA-UGGA A--GU-CGG- GG-GG-ACCU -GAA-A-UCG 3121 G-U------- -GA-CC---- ---------- ---------- -----(---- AUAAAA---- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGA------ A-CU-GA-UU A-AGGU-AAA AUC-GA-UA- AC........ 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS sym.Mastda 4376 bp RNA RNA 02-JUL-1998 DEFINITION endosymbiont of. ACCESSION No information KEYWORDS No information. SOURCE endosymbiont of. ORGANISM endosymbiont of. REFERENCE 1 AUTHORS Bandi,C., Sironi,M., Damiani,G., Magrassi,L., Nalepa,C.A., Laudani,U. and Sacchi,L. TITLE The establishment of intracellular symbiosis in an ancestor of cockroaches and termites JOURNAL Proc. R. Soc. Lond. B 259, 293-299 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: Z35665|g791070 endosymbiont_of= Mastotermes darwiniensis BASE COUNT 413 a 276 c 407 g 350 t 2930 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .........U -GAAC-GN-- UAGC-GGC-G -GGC-UU--A ACAC-AUGCA A-GUC-GAGG 121 G--GC-AA-C AU-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- GGAAUCU-UC (--UAU---- ---------- ---------- 241 --------UA -)GA-AGAUU UU-------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- AUG|-GC--G ACCG-GCGU- 361 -A-CG-GG-U GCGU---AAC -AC-GUAUG- UAA--CCU-A C-CUUU---U -GCUA-G-AA 421 -GAU-AG-CC U--------- ------GA-- G(-GAAA-)C -UUGG-A--U UAAUAUU-CU 481 AU-AAU---- ---------- -------A-U GG-A--A-UC ---CUC-(-- --------GC 541 AU-------- -)-GAG---G AU-UC----U AU--UAAA-- ---GC----- ---------- 601 --(------- ----AAU--- ---)------ ---------| -----G--U- G--GCA---- 661 ----AAAG-- AUG---G-|G CAUGC----- -GU|----CU G--AUUA-G- UUA-G---UU 721 GG-UA-GG-( GU-AAU-GG) -C-CUACC-A A|-GAC-AA- UGA------- -----UC-AG 781 U-AG-G-GG| -G-CCU--(G -AGA)-GGGU ----GU-U-- CCC-C|C-AC -ACUGG-U-A 841 (CUGA-GA-U ACG)--GACC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 AGG-AAUAUU G-GUCAAU-- GG-AG-(GAA A)-CUC-UGA ACCA|-GCUA CGUC-GC-GU 961 G-C-AG-G-A A-GAA--U-G CC(U-UA-U- -G)GG-UUGU AAA--CUGC| UUUU-GU-UU 1021 --AG-GAA-- U--AAAG-AU --UUC-UA-( -----CGUGA ---------) -UAG-AG-AU 1081 ---------- -------U-U U-GA-AGGU- A-CUA-G-AC G-AA--UAAG ---------U 1141 -GUCGGCA-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GACA-C-- 1201 AAG-CGUUAU CC-GGAUUUA -UU-GGGU|U UAAA-GGGU- GCG-UAG-GC -G|-GU-CU- 1261 A-UU-AAG|U CAG---UAGU G-AAA-GG-U UG-CAG-C(- UU-A)A-CUG UUA-A-UAG- 1321 -UGCU-AUUG A-UAC-UGAU A-GACUU-GA GUG-----AG A-UU-GGAGU AAU-U|GGAA 1381 UG-UGUGGU- GUA-GCG(-G UGAAA)-UGC -AU-AGAU-A UC-ACACAG- AACA-CCGA- 1441 -U-C-GC(-G AA-A)GCAG- -AUUACUA-- ---------- ---------- ---------A 1501 GUC--UA-UA CUGACG-CUG AG-G------ -------UA- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA U--CA-CU-- -------A|G -UU-GU-UGG -AU------- ---------- 1681 -(UUU-GC)- ---------- ---------- ---------- ---------A -UUCAG-UGA 1741 CU--AA---- --GC-(GAA- ---A)G-UG- AUAA-GUGAU C|C|A-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-G CU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG C-GUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGAUA-C G)--CGAGGA 1921 A-CCUUA-CC AAG-GU-UUA AAU-GU|--- -------A-C ---UACG--- -AA----UAA 1981 -GCU-A--(- GAAA-)-UAG -U-UUAG--- ---------- ---UC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------U G-)------- GA-------- ---------| CGG-AG-UAC |---A|A--G 2161 AU-GC-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GC-C(-GUG A)-GGUGU-U 2221 GG-G-(UUAA -GU)-CCCUC AA-------- CGAG-C--GC AACCC-UC-A |-UU--GUU- 2281 AG--UUGC-C AU-CGA---- ---------- ---------- ---G(---UG ---AAG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----UCG|G 2701 G-GA-CU-C- U-AAC-AA-G A-CU-G-CCG --AC(-G--U AA)-GUC-GA -GAGG-A-AG 2761 G-UG-AGG-A CG-ACG--UC -A-AAUC-AU CAC-G-GC-U CUUAU-A-CC -UU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGU-C-GG -UA--CAAAG GGU-A-G-C- UA-CUG-G(G 2881 -CAA)UCAG- ---------- AA-GCGAA-U CUCUA-AAAA -CC-G-AUC- UCAGUUCGGA 2941 U-UGGAGUC- (UGCAAC-U- C)-GACUCUA -UGAAGU-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-AUA-(UC -AGCCAU)-G AUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-AAG--- --CCA-UGGA A--GU-CGG- GG-GU-ACCU -GAA-A-UCG 3121 G-U------- -GA-CC---- ---------- ---------- -----(---- AUAAAA---- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGA------ A-CU-GC-UU A-AGGU-AAA AUC-GG-UA- AC........ 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Blt.sp1 4376 bp RNA RNA 02-JUL-1998 DEFINITION Blattabacterium sp.. ACCESSION No information KEYWORDS No information. SOURCE Blattabacterium sp. ORGANISM Blattabacterium sp. REFERENCE 1 AUTHORS Bandi,C., Damiani,G., Magrassi,L., Grigolo,A., Fani,R. and Sacchi,L. TITLE Flavobacteria as intracellular symbionts in cockroaches JOURNAL Proc. R. Soc. Lond., B, Biol. Sci. 257, 43-48 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X75626|g515323 endosymbiont_of= Blattella germanica BASE COUNT 418 a 280 c 405 g 350 t 2923 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .........U -GAAC-GC-- UAGC-GGC-A -GGC-UU--A ACAC-AUGCA A-GUC-GAGG 121 G--GC-AG-C AU-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- GAAAUCU-AU (---U----- ---------- ---------- 241 --------AU -)AU-AGAUU UU-------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- AUG|-GC--G ACCG-GCGU- 361 -A-CG-GG-U GCGU---AAC -AC-GUACG- UAA--CCU-A C-CUUU---U -GCUA-G-AA 421 -GAU-AG-CC U--------- ------GA-- G(-GAAA-)C -UCGG-A--U UAAUAUU-CU 481 AU-AAU---- ---------- -------A-U AGAU--A-AA ---AUC-(-- --------GC 541 AU-------- -)-GAU---U UU-AC----U AU--UAAA-- ---GCA---- ---------- 601 --(------- ---GAAA--- ---)------ ---------| ----UG--C- G--GCA---- 661 ----AGAG-- AUG---G-|G CGUGC----- -GU|----CC G--AUUA-G- UUA-G---UU 721 GG-UA-AG-( GU-AAA-AG) -C-UUACC-A A|-GAC-AA- UGA------- -----UC-GG 781 U-AG-G-GG| -G-CCU--(G -AGA)-GGGU ----GA-U-- CCC-C|C-AC -ACUGG-U-A 841 (CUGA-GA-U ACG)--GACC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 AGG-AAUAUU G-GUCAAU-- GG-AG-(GAA A)-CUC-UGA ACCA|-GCCA CGCC-GC-GU 961 G-C-AG-G-A A-GAA--U-G CC(U-UA-C- -G)GG-UUGU AAA--CUGC| UUUU-GU-UU 1021 --AG-GAA-- UA-AAAA-UU --CUU-A--( -----CGUGA ---------) --UA-AG-AA 1081 ---------- -------U-U AUGA-AUGU- A-CUA-U-AC G-AA--UAAG ---------U 1141 -GUCGGCA-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GACA-C-- 1201 AAG-CGUUAU CC-GGAUUUA -UU-GGGU|U UAAA-GGGU- GCG-UAG-GC -G|-GU-UU- 1261 A-UU-AAG|U CAG---UAGU G-AAA-UG-U UG-CAG-C(- UU-A)A-CUG UUA-A-AAU- 1321 -UGCU-AUUG A-UAC-UGGU A-GACUU-GA GUG-----AG A-UU-GGAGU AGC-U|GGAA 1381 UG-UGUGGU- GUA-GCG(-G UGAAA)-UGC -AU-AGAU-A UC-ACACAG- AACA-CCGA- 1441 -U-C-GC(-G AA-A)GCAG- -GUUACUA-- ---------- ---------- ---------A 1501 GUC--UA-UA CUGACG-CUG AG-G------ -------CA- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA U--CA-CU-- -------A|G -UU-GU-UGG -A-------- ---------- 1681 -(UUU-UU)- ---------- ---------- ---------- ---------- -UUCAG-UGA 1741 CU--AA---- --GC-(GAA- ---A)G-UG- AUAA-GUGAU C|C|A-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-G CU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG C-GUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGAUA-C G)--CGAGGA 1921 A-CCUUA-CC AAG-GU-UUA AAU-GU|--- -------A-C ---UACG--- -AA----UAA 1981 -GCU-A--(- GAAA-)-UAG -U-UUAG--- ---------- ---UC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GA-------- ---------| CGG-AG-UAC |---A|A--G 2161 AU-GC-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GC-C(-GUG A)-GGUGU-U 2221 GG-G-(UUAA -GU)-CCCUC AA-------- CGAG-C--GC AACCC-UU-A |-UU--GUU- 2281 AG--UUGC-C AG-CGA---- ---------- ---------- ---A(---UC ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----UCG|G 2701 G-GA-CU-C- U-AGA-AA-G A-CU-G-CCG --AC(-G--U AA)-GUC-GA -GAGG-A-AG 2761 G-UG-GGG-A CG-ACG--UC -A-AAUC-AU CAC-G-GC-U CUUAU-A-CC -UU--GGGC- 2821 C-ACA-CA-C GUG--CUACA AUGGU-C-GG -UA--CAAAG GGU-U-G-C- UA-CUG-A(G 2881 -UAA)UCAG- ---------- AA-GCUAA-U CUCUA-AAAG -CC-G-AUC- UCAGUUCGGA 2941 U-UGGAGUC- (UGCAAC-U- C)-GACUCUA -UGAAGU-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-AUA-(UC -AGCCAU)-G AUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-AAG--- --CCA-UGGA A--GU-CGG- GG-GU-ACCU -GAA-A-UUG 3121 G-U------- -GA-CC---- ---------- ---------- -----(---- GUAAAA---- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGA------ G-CU-GC-UU A-AGGU-AAA AUC-GA-UA- ACU-GGGG-C 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Blt.sp7 4376 bp RNA RNA 02-JUL-1998 DEFINITION Blattabacterium sp.. ACCESSION No information KEYWORDS No information. SOURCE Blattabacterium sp. ORGANISM Blattabacterium sp. REFERENCE 1 AUTHORS Bandi,C., Sironi,M., Damiani,G., Magrassi,L., Nalepa,C.A., Laudani,U. and Sacchi,L. TITLE The establishment of intracellular symbiosis in an ancestor of cockroaches and termites JOURNAL Proc. R. Soc. Lond. B 259, 293-299 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: Z35666|g790980 BASE COUNT 414 a 274 c 397 g 342 t 2949 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ACAC-AUGCA A-GUC-GAGG 121 G--GC-AG-C AU-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- GAAAUCU-AU (--GC----- ---------- ---------- 241 --------AA -)AU-AGAUU UU-------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- AUG|-GC--G ACCG-GCGU- 361 -A-CG-GG-U GCGU---AAC -AC-GUACG- UAA--CCU-A C-CUUU---U -GCUA-G-AA 421 -AAU-AG-CC U--------- ------GA-- G(-GAAA-)C -UCGG-A--U UAAUGUU-CU 481 AU-AGC---- ---------- -------A-U AA-U--A-AA ---AUC-(-- --------GC 541 AU-------- -)-GAU---U UU-AU----U AU--UAAA-- ---GCA---- ---------- 601 --(------- ---GAAA--- ---)------ ---------| ----UG--C- G--GCA---- 661 ----AAAG-- AUG---G-|A CGUGC----- -GU|----CC G--AUUA-G- UUA-G---UU 721 GG-UG-AG-( GU-AAA-GG) -C-UUACC-A A|-GAC-GA- UGA------- -----UC-GG 781 U-AG-G-GG| -G-CCU--(G -AGA)-GGGU ----GA-U-- CCC-C|C-AC -ACUGG-U-A 841 (CUGA-GA-C ACG)--GACC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 AGG-AAUAUU G-GUCAAU-- GG-AG-(GAA A)-CUC-UGA ACCA|-GCCA CGCC-GC-GU 961 G-C-AG-G-A A-GAA--U-G CC(U-UA-C- -G)GG-UUGU AAA--CUGC| UUUU-GU-UU 1021 --AG-GAA-- UA-AAAA-UU --CUU-A--( -----CGUGA ---------) --UA-AG-AA 1081 ---------- -------U-U AUGA-AUGU- A-CUA-U-AC G-AA--UAAG ---------U 1141 -GUCGGCA-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GACA-C-- 1201 AAG-CGUUAU CC-GGAUUUA -UU-GGGU|U UAAA-GGGU- GCG-UAG-GC -G|-GU-UU- 1261 A-UU-AAG|U CAG---UAGU G-AAA-UA-U UG-CAG-C(- UU-A)A-CUG UUA-A-AAU- 1321 -GGCU-AUUG A-UAC-UGAU A-AACUU-GA GUG-----AG A-UU-GGAGU AGC-U|GGAA 1381 UG-UGUGGU- GUA-GCG(-G UGAAA)-UGC -AU-AGAU-A UC-ACACAG- AACA-CCGA- 1441 -U-C-GC(-G AA-A)GCAG- -GUUACUA-- ---------- ---------- ---------A 1501 AUC--UA-UA CUGACG-CUG AG-G------ -------CA- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ---GGGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA U--CA-CU-- -------A|G -UU-GU-UGG -A-------- ---------- 1681 -(UUU-AU)U ---------- ---------- ---------- ---------U -UUCAG-UGA 1741 CU--AA---- --GC-(GAA- ---A)G-UG- AUAA-GUGAU C|C|A-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-G CU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG C-GUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGAUA-C G)--CGAGGA 1921 A-CCUUA-CC AAG-GU-UUA AAU-GU|--- -------A-C ---UACG--- -AA----UAA 1981 -GCU-A--(- GAAA-)-UAG -U-UUAG--- ---------- ---UC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GA-------- ---------| CGG-AG-UAC |---A|A--G 2161 AU-GC-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GC-C(-GUG A)-GGUGU-U 2221 GG-G-(UUAA -GU)-CCCUC AA-------- CGAG-C--GC AACCC-UC-A |-UU--GUU- 2281 AG--UUGC-C AG-CGA---- ---------- ---------- ---A(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----UCG|G 2701 G-GA-CU-C- U-AGC-AA-G A-CU-G-CCG --AC(-G--U AA)-GUC-GA -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAC-G-GC-U CUUAU-A-CC -UU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGU-C-GG -UA--CAAAG GGG-U-G-C- UA-CUG-G(G 2881 -UGA)UCAG- ---------- AU-GCUAA-U CUCUA-AAAG -CC-G-AUC- UCAGUUCGGA 2941 U-UGGAGUC- (UGCAAC-U- C)-GACUCUA -UGAAGU-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-AUA-(UC -AGCCAU)-G AUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-AAG--- --CCA-UGGA A--GU-CGG- GG-GG-ACCU -AAA-A-UCG 3121 G-U------- -GA-CU---- ---------- ---------- -----(---- GUAAAA---- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGA------ A-CU-GC-UU A-AGGU-AAA AUC-GG-UA. .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Blt.sp5 4376 bp RNA RNA 02-JUL-1998 DEFINITION Blattabacterium sp.. ACCESSION No information KEYWORDS No information. SOURCE Blattabacterium sp. ORGANISM Blattabacterium sp. REFERENCE 1 AUTHORS Bandi,C., Damiani,G., Magrassi,L., Grigolo,A., Fani,R. and Sacchi,L. TITLE Flavobacteria as intracellular symbionts in cockroaches JOURNAL Proc. R. Soc. Lond., B, Biol. Sci. 257, 43-48 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X75623|g515324 endosymbiont_of= Pycnoscelus surinamensis BASE COUNT 405 a 267 c 392 g 336 t 2976 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... ....C-GN-- UNGC-GGC-G -GGC-UU--A ACNC-NUGCA A-GUC-GAGG 121 G--GC-AA-C AU-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- AAAAUCU-AU (--GU----- ---------- ---------- 241 --------AA -)AU-AGAUU UU-------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- AUG|-GC--G ACCG-GCGU- 361 -A-CG-GG-U GCGU---AAC -AC-GUACG- UAA--CCU-A C-CUUU---U -GCUA-G-AA 421 -AAU-AG-CC U--------- ------GA-- G(-GAAA-)C -UUGG-A--U UAAUGUU-CU 481 AU-AGU---- ---------- -------A-U AA-U--A-AA ---AUC-(-- --------GC 541 AU-------- -)-GAU---U UU-AU----U AU--UAAA-- ---GUA---- ---------- 601 --(------- ---GAAA--- ---)------ ---------| ----UA--C- G--GCA---- 661 ----AAAG-- AUG---G-|G CGUGC----- -GU|----CU G--AUUA-G- UUA-G---UU 721 GG-UA-AG-( GU-AAA-GG) -C-UUACC-A A|-GAC-AA- UGA------- -----UC-AG 781 U-AG-G-GG| -G-CCU--(G -AGA)-GGGU ----GA-U-- CCC-C|C-AC -ACUGG-U-A 841 (CUGA-GA-C ACG)--GACN -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 AGG-AAUAUU G-GUCAAU-- GG-AG-(GAA A)-CUC-UGA ACCA|-GCCA CNNN-GC-GU 961 G-C-AG-G-A A-GAA--U-G CC(U-UA-N- -G)GG-UUGU AAA--CUGC| UUUU-GU-UU 1021 --AG-GAA-- U......... .........( .......... ......---) ......A-AU 1081 ---------- -------U-G U-GA-AUGU- A-CUA-U-AC G-AA--UAAG ---------U 1141 -GUCGGCA-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GACA-C-- 1201 AAG-CGUUAU CC-GGAUUUA -UU-GGGU|U UAAA-GGGU- GCG-UAG-GC -G|-GU-UU- 1261 A-UU-AAG|U CAG---UAGU G-AAA-UG-U UG-NAG-C(- UU-A)A-CUG UUA-A-AAN- 1321 -UGCU-AUUG A-UAC-UGAU A-GACUU-GA GUG-----AG A-UU-GGAGU AGC-U|RGAA 1381 UG-UGUGGU- GUA-GCG(-G UGAAA)-UGC -AU-AGAU-A UC-ACACAG- AACA-CCGA- 1441 -U-C-GC(-G AA-A)GCAG- -GNUACUA-- ---------- ---------- ---------A 1501 GUC--UA-UA CUGACG-CUG AG-G------ -------CA- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUNA-G AUAC)-CCU- ----GGUA-G UC----CAN- G-CC-CU--A 1621 AAC-G-AUGA U--CA-CU-- -------A|G -UU-GU-UGG -A-------- ---------- 1681 -(UUU-AU)- ---------- ---------- ---------- ---------- -UUCAG-UGA 1741 CU--AA---- --GC-(GAA- ---A)G-UG- AUAA-GUGAU C|C|A-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-G CU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG C-GUGG-AGC A-U-GU-GGU -CUAAUU-CG -(AUGAUA-C G)--CGAGGA 1921 A-CCUUA-CC AAG-GU-UUA AAU-GU|--- -------A-C ---UACG--- -AA----UAA 1981 -GCU-A--(- GAAA-)-UAG -U-UUAG--- ---------- ---UC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GA-------- ---------| CGG-AG-UAC |---A|A--G 2161 AU-GC-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GC-C(-GUG A)-GGUGU-U 2221 GG-G-(UUAA -GU)-CCCUC AA-------- CGAG-C--GC AACCC-UU-A |-UU--GUU- 2281 AG--UUGC-C AG-CGA---- ---------- ---------- ---A(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----UCG|G 2701 G-GA-CU-C- U-AAC-AA-G A-CU-G-CCG --AC(-G--U AA)-GUC-GA -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAC-G-GC-U CUUAU-G-CC -UU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGU-C-GG -UA--CAAAG GGU-U-G-C- UA-CUG-G(G 2881 -CAA)UCAG- ---------- AA-GCUAA-U CUCUA-AAAG -CC-G-AUC- UCAGUUCGGA 2941 U-UGGAGUC- (UGCAAC-U- C)-GACUCUA -UGAAGU-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-AUA-(UC -AGCCAU)-G AUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-AAG--- --CCA-UGGA A--GU-CGG- GG-GG-ACCU -GAA-A-UCG 3121 G-U------- -GA-CC---- ---------- ---------- -----(---- AUAAAA---- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGA------ G-CU-GC-UU A-AGGU-AAA A......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Blt.sp2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Blattabacterium sp.. ACCESSION No information KEYWORDS No information. SOURCE Blattabacterium sp. ORGANISM Blattabacterium sp. REFERENCE 1 AUTHORS Bandi,C., Damiani,G., Magrassi,L., Grigolo,A., Fani,R. and Sacchi,L. TITLE Flavobacteria as intracellular symbionts in cockroaches JOURNAL Proc. R. Soc. Lond., B, Biol. Sci. 257, 43-48 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X75622|g516264 endosymbiont_of= Nauphoeta cinerea BASE COUNT 415 a 273 c 401 g 350 t 2937 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .........U -GAAC-GN-- UAGC-GGC-N -GGC-UU--A ACAC-AUGCA A-GUC-GAGG 121 G--GC-AA-C AU-------- ---------- ---------- ---------- ---------- 181 ---------- ---------G AAAUCUA-UA (--UU----- ---------- ---------- 241 --------A- -)UA-UAGAU UUU------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- AUG|-GC--G ACCG-GCGU- 361 -A-CG-GG-U GCGU---AAC -AC-GUACG- UAA--CCU-A C-CUUU---U -GCUA-G-AA 421 -AAU-AG-CC U--------- ------GA-- G(-GAAA-)C -UUGG-A--U UAAUGUU-CU 481 AU-AGU---- ---------- -------A-U AA-U--G-AA ---AUC-(-- --------GC 541 AU-------- -)-GAU---U UU-AU----U AU--UAAA-- ---GUA---- ---------- 601 --(------- ---GAAA--- ---)------ ---------| ----UA--C- G--GCA---- 661 ----AAAG-- AUG---G-|G CGUGC----- -GU|----CC G--AUUA-G- UUA-G---UU 721 GG-UA-GG-( GU-AAA-GG) -C-UUACC-A A|-GAC-GA- UGA------- -----UC-GG 781 U-AG-G-GG| -G-CCU--(G -AGA)-GGGU ----GA-U-- CCC-C|C-AC -ACUGG-U-A 841 (CUGA-GA-C ACG)--GACC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 AGG-AAUAUU G-GUCAAU-- GG-AG-(GAA A)-CUC-UGA ACCA|-GCCA CGCC-GC-GU 961 G-C-AG-G-A A-GAA--U-G CC(U-UA-U- -G)GG-UUGU AAA--CUGC| UUUU-GU-UU 1021 --AG-GAA-- UA-AAAA-UU --CUU-A--( -----CGUGA ---------) --UA-AG-AA 1081 ---------- -------U-U GUGA-AUGU- A-CUA-U-AC G-AA--UAAG ---------U 1141 -GUCGGCA-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GACA-C-- 1201 AAG-CGUUAU CC-GGAUUUA -UU-GGGU|U UAAA-GGGU- GCG-UAG-GC -G|-GU-UU- 1261 A-UU-AAG|U CAG---UAGU G-AAA-UA-U UG-CAG-C(- UU-A)A-CUG UUA-A-AAU- 1321 -GGCU-AUUG A-UAC-UGAU A-GACUU-GA GUG-----AG A-UU-GGAGU AGC-U|GGAA 1381 UG-UGUGGU- GUA-GCG(-G UGAAA)-UGC -AU-AGAU-A UC-ACACAG- AACA-CCGA- 1441 -U-C-GC(-G AA-A)GCAG- -GUUACUA-- ---------- ---------- ---------A 1501 AUC--UA-UA CUGACG-CUG AG-G------ -------CA- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA U--CA-CU-- -------A|G -UU-GU-UGG -A-------- ---------- 1681 -(UUU-AU)- ---------- ---------- ---------- ---------- -UUCAG-UGA 1741 CU--AA---- --GC-(GAA- ---A)G-UG- AUAA-GUGAU C|C|A-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-G CU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG C-GUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGAUA-C G)--CGAGGA 1921 A-CCUUA-CC AAG-GU-UUA AAU-GU|--- -------A-C ---UACG--- -AA----UAA 1981 -GCU-A--(- GAAA-)-UAG -U-UUAG--- ---------- ---UC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GA-------- ---------| CGG-AG-UAC |---A|A--G 2161 AU-GC-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GC-C(-GUG A)-GGUGU-U 2221 GG-G-(UUAA -GU)-CCUUC AA-------- CGAG-C--GC AACCC-UU-A |-UU--GUU- 2281 AG--UUGC-C AG-CGA---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----UCG|G 2701 G-GA-CU-C- U-AAC-AA-G A-CU-G-CCG --AC(-G--U AA)-GUC-GA -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAC-G-GC-U CUUAU-G-CC -UU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGU-C-GG -UA--CAAAG GGUUU-G-C- UA-CUG-A(G 2881 -CAA)UCAG- ---------- AA-GCUAA-U CUCUA-AAAG -CC-G-AUC- CCAGUUCGGA 2941 U-UGGAGUC- (UGCAAC-U- C)-GACUCUA -UGAAGU-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-AUA-(UC -AGCCAU)-G AUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-AAG--- --CCA-UGGA A--GU-CGG- GG-GG-ACCU -AAA-A-UCG 3121 G-U------- -GA-CC---- ---------- ---------- -----(---- AUUAAA---- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGA------ G-CU-GC-UU A-GGGU-AAA A......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS str.2026 4376 bp RNA RNA 02-JUL-1998 DEFINITION str. SBR2026. str. SBR2026. ACCESSION No information KEYWORDS No information. SOURCE str. SBR2026. str. SBR2026. ORGANISM str. SBR2026. REFERENCE 1 AUTHORS Bond,P.L., Hugenholtz,P., Keller,J. and Blackall,L.L. TITLE Bacterial community structures of phosphate-removing and non-phosphate-removing activated sludges from sequencing batch reactors JOURNAL Appl. Environ. Microbiol. 61 (5), 1910-1916 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X84568|g871689 isolate_name= SBR2026 BASE COUNT 100 a 96 c 130 g 72 t 3978 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... UAGC-GGC-A -GGC-UU--G ACNC-AUGCA A-GUC-GAGG 121 G--GC-AG-C GC---G---- ---------- ---------- ---------- ---------- 181 ---------- ---------- ----AUG-UA (--GC----- ---------- ---------- 241 --------AA -)UA-CAU-- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- -------UG- GCG|-GC--G ACCG-GCGC- 361 -A-CG-GG-U GCGU---AAC -AC-GUAUG- GAA--UCU-G C-CCUG---U -ACUG-G-AA 421 -GAU-AA-CC C--------- ------GG-- C(-GAAA-)G -UCGG-A--C UAAUAUC-CC 481 AU-AAU---- ---------- ---------A GC-C--G-AG ---GUG-(-- --------GC 541 AU-------- -)-CAC---C UU-GG----U UU--GAAA-- ---GC----- ---------- 601 --(------- ---UCCG--- ---)------ ---------| -----G--C- G--GUA---- 661 ----CAGG-- AUG---A-|C CAUGC----- -GC|----AC G--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAC-GG) -C-UCACC-A A|-GGC-UA- CGA------- -----UC-GU 781 U-AG-G-GG| -G-GCU--(G -AGA)-GGGU ----UA-U-- CCC-C|C-AC -ACUGG-U-A 841 (CUGA-GA-C ACG)--GACC -AGA-C-UCC -(UACG)--G GAG-GN-AG- C-A---GU-G 901 AGG-AAUAUU G-CGCAAU-- GG-AG-(GGA A)-CUC-UGA CGCA|-GNCA UGCC-GC-GU 961 G-C-AG-G-A A-GAA--G-G CG(C-UA-C- -G)CG-UUGU AAA--CUGC| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS env.311 4376 bp RNA RNA 02-JUL-1998 DEFINITION clone 311.. ACCESSION No information KEYWORDS No information. SOURCE clone 311. ORGANISM clone 311. REFERENCE 1 AUTHORS Benlloch,S., Rodriguez-Valera,F. and Martinez-Murcia,A.J. TITLE Bacterial diversity in two coastal lagoons deduced from 16S rDNA PCR amplification and partial sequencing JOURNAL FEMS Microbiol. Ecol. 18, 267-280 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X89310 BASE COUNT 51 a 42 c 70 g 39 t 4174 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... ........GU 781 UUAG-G-GG| -G-CCU--(G -GAG)-AGGG ----UG-U-- CCC-C|C-AC -ACUGG-U-A 841 (CUGA--A-C -CG)--GACC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 AGG-AAUAUU G-GGCAAU-- GG-AC-(GAA A)-GUC-UGA CGCA|-GCCA UGCC-GC-GU 961 G-C-AG-G-A A-GAA----U GC(C-UA-C- -G)GG-UUGU AAA--CUGC| UUUU-AU-AU 1021 --GA-GAA-- GA-ACCG--G --GGN-A--( -----CGUG- ---------) --U---C-GG 1081 ---------- ------GGGG U-GA-CGGU- A-UCA-U-AU A-A....... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS 2.7.1.2.4 4376 bp RNA RNA 09-JAN-1999 DEFINITION 2.7.1.2.4 MY.ODORATUS_ASSEMBLAGE. ACCESSION No information KEYWORDS No information. SOURCE 2.7.1.2.4 MY.ODORATUS_ASSEMBLAGE. ORGANISM 2.7.1.2.4 MY.ODORATUS_ASSEMBLAGE. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 0 a 0 c 0 g 0 t 4376 others ORIGIN 1 x~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~-- ------~~~~ 541 ~~~~~~---- -~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~---~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- 1681 -(~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- -------~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~----~~~ 1981 ~~~~-~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~--- --~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~------ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~---~~ ---~~~--~~ 2341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- 3181 ---------- ---------- ---------- ------~)~~ ~~~~~~~~~~ ~~~~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS My.odoratu 4376 bp RNA RNA 02-JUL-1998 DEFINITION Myroides odoratus. ACCESSION No information KEYWORDS No information. SOURCE Myroides odoratus. ORGANISM Myroides odoratus. REFERENCE 1 AUTHORS Gherna,R. and Woese,C.R. TITLE A partial phylogenetic analysis of the "Flavobacter-Bacteroides" phylum: basis for taxonomic restructuring JOURNAL Syst. Appl. Microbiol. 15, 513-521 (1992) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: M58777 Former RDP Sids: F.odoratum ATCC 4651 (T) = NCTC 11036 = LMG 1233 = DSM 2801 NB: former name Flavobacterium odoratum BASE COUNT 397 a 290 c 410 g 346 t 2933 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~NUACGAUGA AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAU -NAAC-GC-- UAGC-GGC-A -GGC-CU--A ACAC-AUGCA A-GUC-GAGG 121 G--------- -----GUAU- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---AGAG-AG (--CU----- ---------- ---------- 241 --------UG -)CU-UUCU- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --AGAG---- ---|------ ACCN-GCGG- 361 -A-UG-GG-U GAGU---AAC -GC-GUAUG- CAA--CCU-N C-CUUU---U -ACAG-G-GG 421 -AAU-AG-CC C--------- ------GG-- A(-GAAA-)U -UCGG-A--U UAAUGCU-CC 481 AU-GGU---- ---------- -------U-U AU-A--U-GA ---AUG-(-- --------GC 541 AU-------- -)-CGU---U UR-UA----U AA--UAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--GUA---- 661 ----AAAG-- AUG---G-|G CAUGC----- -GU|----AU C--AUUA-G- CUA-G---UU 721 GG-UG-UG-( GU-AAC-GG) -C-AUACC-A A|-GGC-UN- CGA------- -----UG-AU 781 U-AG-G-GG| -U-CCU--(G -AGA)-GGGA ----GA-U-- CCC-C|C-AC -ACUGG-U-A 841 (CUGA-GA-C ACG)--GACC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 AGG-AAUAUU G-GUCAAU-- GG-AG-(GCA A)-CUC-UGA ACCA|-GCCA UGCC-GC-GU 961 G-C-AG-G-A U-GAC--G-G UC(C-UA-U- -G)GA-UUGU AAA--CUGC| NUUU-GU-AC 1021 --GG-GAA-- GA-AAUG-UA --AUU-A--( -----CGUG- ---------) --UA-AU-UA 1081 ---------- -------U-U U-GA-CGGU- A-CCG-U-AA G-AA--UAAG ---------G 1141 -AUCGGCU-N ACUCC-GUG( CCA--GCAGC CGCGNNN-A) U-A-C-GGAG |-NAUC-C-- 1201 NAG-CGUUAU CC-GGAAUUA -UU-GGGU|U UAAA-GGGU- UCG-UAG-GC -G|-GU-UG- 1261 A-GU-AAG|U CAG---UGGU G-AAA-UC-U UA-UAG-C(- UU-A)A-CUA -UA-A-AAU- 1321 -UGCC-GUUG A-UAC-UGCU U-GACUU-GA AUA-----GU A-UG-GAAGU AAU-U|AGAA 1381 UA-UGUAGU- GUA-GCG(-G UGAAA)-UGC -UU-AGAU-A UU-ACAUGG- AAUA-CCAA- 1441 -U-U-GC(-G AA-G)GCAG- -AUUACUA-- ---------- ---------- ---------C 1501 GUA--CU-UA UUGACG-CUG AU-G------ -------AA- C-GAAA-GC- GU-GGG-UA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGG A--UA-CU-- -------A|G -CU-GU-UCG -GU-U----- ---------- 1681 -(-UU-CG)- ---------- ---------- ---------- --------GA -CUGAG-UGG 1741 CU--NA---- --GC-(GAA- ---A)G-UG- AUAA-GUAUC C|C|A-CCU- G-GGGAGUAC 1801 GUU-C---(G CAA)---G-A AU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CN--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGNUA-C G)--CGAGGA 1921 A-CCUUA-CC AAG-GC-UNA AAU-GU|--- -------A-G ---AUUG--- -AC----AGG 1981 -UUU-A--(- GAGA-)-UAG -A-CUUU--- ---------- ---UC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GA-------- ---------| CAA-UU-UAC |---A|A--G 2161 GU-GC-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GC-C(-GUG A)-GGUGU-C 2221 AG-G-(UUAA -GU)-CCUAU AA-------- CGAG-C--GC AACCC-CU-A |-UU--GUU- 2281 AG--UUGC-C AG-CGG---- ---------- ---------- ---G(---UC ---AAG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CCG|G 2701 G-AA-CU-C- U-AAC-AA-G A-CU-G-CCG --GU(-G--C AA)-ACC-GU -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAC-G-GC-C NNUAC-G-UC -UU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-C-AG -UA--CAGAA AGC-A-G-C- UA-CCA-G(G 2881 -CAA)CUGG- ---------- AU-GCGAA-U CUCA--AAAA -CU-N-GUC- UCAGUUCGGA 2941 U-UGGAGUC- (UGCAAC-U- C)-GACUCCA -UGAAGC-UG -GAAU-CGC- -UAGUA-AUC 3001 GG-AUA-(UC -AGCCAU)-G AUC-CGGUG- AAUAC-GUU- CCC-GGG-CN UUGUA----C 3061 ACACCGCNC- GUC-AAG--- --NCA-UGGA A--GC-CNG- GN-GU-ACCU -GAA-G-UCG 3121 G-U------- -CG-CC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGA------ G-CU-GC-CU A-GGGU-AAA ACU-GG-UA- ACU-AGGG-C 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS My.odorat2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Myroides odoratus. ACCESSION No information KEYWORDS No information. SOURCE Myroides odoratus. ORGANISM Myroides odoratus. REFERENCE 1 AUTHORS Nakagawa,Y. and Yamasato,K. TITLE Emendation of the genus Cytophaga and transfer of Cytophaga agarovorans and Cytophaga salmonicolor to Marinilabilia gen. nov: phylogenetic analysis of the Flavobacterium-Cytophaga complex JOURNAL Int. J. Syst. Bacteriol. 46, 599-603 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: D14019|g1711222 NB: Added by Bergey's to RDP Release 6.0 tree BASE COUNT 352 a 247 c 348 g 318 t 3111 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-.U----- ---------- ---------- 241 --------UG -)CU-UUNCU ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --AGAG---- ---|------ ACCU-NCGG- 361 -A-UG-GG-U GAGU---AAC -GC-GUAUG- CAA--CCU-N C-CUUU---U -ACAG-G-GG 421 -AAU-AG-CC C--------- ------GG-- A(-GAAA-)U -UCGG-A--U UAAUNCU-CC 481 AU-GGU---- ---------- -------U-U AU-A--U-GA ---AUG-(-- --------GC 541 AU-------- -)-NGU---U UN-UA----U AA--UAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--GUA---- 661 ----AAAG-- AUG---G-|G CAUGC----- -GU|----AU C--AUUA-G- CUA-G---UU 721 GG-UG-UG-( GU-AAC-GG) -C-AUACC-A A|-GGC-UN- CGA------- -----UG-AU 781 U-AG-G-GG| -U-CCU--(G -AGA)-GGGA ----GA-U-- CCC-C|C-AC -ACUGG-U-A 841 (CUGA-GA-C ACG)--GACC -AGU-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 AGG-AAUAUU G-GUCAAU-- GG-AG-(GCA A)-CUC-UGA ACCA|-GCCA UGCC-GC-GU 961 G-C-AG-G-A U-GAC--G-G UC(C-UA-U- -G)GA-UUGU AAA--CUNC| UUUU-GU-UC 1021 --GG-GAA-- GA-AAUG-UA --AUU-A--( -----CGUG- ---------) --UA-AU-UA 1081 ---------- -------U-U U-GA-CGGU- A-CCG-U-AA G-AA--UAAG ---------G 1141 -AUCGGCU-A ACUCC-GUG( CCA--GCANC NNCGGNN-A) U-A-C-GGAG |-GAUC-C-- 1201 GAG-CGUUAU CC-GGAAUUA -UU-GGGU|U UAAA-GGGU- UCG-UAG-GC -G|-GU-UG- 1261 A-GU-AAG|U CAG---UGGU G-AAA-UC-U UA-UAG-C(- UU-A)A-CUA -UA-A-AAU- 1321 -UGCC-GUUG A-UAC-UGCU U-GACUU-GA AUA-----GU A-UG-GAAGU AAU-U|AGAA 1381 UA-UGUAGU- GUA-GCG(-G UGAAA)-UGC -UU-AGAU-A UU-ACAUGG- AAUA-CCAA- 1441 -U-U-GC(-G AA-G)GCAG- -AUUACUA-- ---------- ---------- ---------C 1501 GUA--CU-UA UUGACG-CUG AU-G------ -------AA- C-GAAA-GC- GU-GGG-UA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGG A--UA-CU-- -------A|G -CU-NU-UCG -GU-U----- ---------- 1681 -(-UU-CG)- ---------- ---------- ---------- --------GA -CUGAG-UGG 1741 CU--AA---- --GC-(GAA- ---A)G-UG- AUAA-GUAUC C|C|A-CCU- G-GGGAGUAC 1801 GUU-C---(G CAA)---G-A AU-GAAACUC -AAA-GGAAU UG-ACGGG-G -N-C-CC--G 1861 C-A--CA-AU CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGAUA-C G)--CGAGGA 1921 A-CCUUA-CC AAG-GC-UUA AAU-GU|--- -------A-G ---AUUG--- -NC----AGG 1981 -UUU-A--(- GAGA-)-UAG -A-CNNN--- ---------- ---UC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GA-------- ---------| CAA-UU-UAC |---A|A--G 2161 GU-GC-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GC-C(-GUG A)-GGUGU-C 2221 AG-G-(UUAA -GU)-CCUAU AA-------- CGAG-C--GC AACCC-CU-A |-UU--GUU- 2281 AG--UUGC-C AG-CGG---- ---------- ---------- ---G(---UC ---AAG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CCG|G 2701 G-AA-CU-C- U-AAC-AA-G A-CU-G-CCG --GU(-G--C AA)-ACC-GU -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AACC-AU CAC-G-GC-C CUUAC-G-UC -UU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-C-AG -UA--CAGAA AGC-A-G-C- UA-CCA-G(G 2881 -CAA)CUGG- ---------- AU-UCGAA-U CUCA--AAAA -CU-N-GUC- UCAGUUCGGA 2941 U-UGGAGUC- (UGCAAC-U- N)-GACUCCA -UGAAGC-UG -GAAU-CGC- -UAGUA-AUC 3001 GG-AUA-(UC -AGCCAU)-G AUC-CGGUG- AAUAC-G... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS env.22a 4376 bp RNA RNA 02-JUL-1998 DEFINITION clone 22a.. ACCESSION No information KEYWORDS No information. SOURCE clone 22a. ORGANISM clone 22a. REFERENCE 1 AUTHORS Benlloch,S., Rodriguez-Valera,F. and Martinez-Murcia,A.J. TITLE Bacterial diversity in two coastal lagoons deduced from 16S rDNA PCR amplification and partial sequencing JOURNAL FEMS Microbiol. Ecol. 18, 267-280 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X89282 BASE COUNT 56 a 46 c 60 g 43 t 4171 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 U-AG-G-GG| -G-CCU--(G -AGA)-CGGU ----GG-U-- CCC-C|C-AC -ACUGG-U-A 841 (CUGA-GA-C ACG)--GACC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 AGG-AAUAUU G-GUCAAU-- GG-AG-(GAA A)-CUC-UGA ACCA|-GCCA UGCC-GC-GU 961 G-A-AG-G-A U-GAC--G-G CC(C-UA-U- -G)GG-UUGU AAA--CUUC| UUUU-AU-AU 1021 --GG-GAA-- GAAAACU-UA --UCU-A--( -----CGUG- ---------) --UA-GA-UA 1081 ---------- -------A-C U-GA-CGGU- A-CCA-U-AC G-C....... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS 2.7.1.2.5 4376 bp RNA RNA 09-JAN-1999 DEFINITION 2.7.1.2.5 F.FLEVENSE_SUBGROUP. ACCESSION No information KEYWORDS No information. SOURCE 2.7.1.2.5 F.FLEVENSE_SUBGROUP. ORGANISM 2.7.1.2.5 F.FLEVENSE_SUBGROUP. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 0 a 0 c 0 g 0 t 4376 others ORIGIN 1 x~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~-- ------~~~~ 541 ~~~~~~---- -~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~---~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- 1681 -(~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- -------~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~----~~~ 1981 ~~~~-~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~--- --~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~------ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~---~~ ---~~~--~~ 2341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- 3181 ---------- ---------- ---------- ------~)~~ ~~~~~~~~~~ ~~~~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS env.PAD36 4376 bp RNA RNA 02-JUL-1998 DEFINITION unidentified soil. ACCESSION No information KEYWORDS No information. SOURCE unidentified soil. ORGANISM unidentified soil. REFERENCE 1 AUTHORS Ueda,T. TITLE Genetic diversity in soil bacteria JOURNAL Unpublished (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: D26223|g498425 library_source= unidentified soil bacterium from paddy field BASE COUNT 69 a 71 c 80 g 58 t 4098 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... ......CU-G |-UU--GUU- 2281 AG--UUGC-C AG-CGA---- ---------- ---------- ---G(---UC ---GAG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----UCG|G 2701 G-AA-CU-C- U-AAC-AA-G A-CU-G-CCA --GU(-G--C AA)-ACU-GU -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAC-G-GC-C CUUAC-G-CC -UU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-C-GG -UA--CAGAG AGC-A-G-C- CA-CUU-C(G 2881 -CAA)GGAG- ---------- GA-GCGAA-U CUAU--AAAA -CC-G-GUC- UCAGUUCGGA 2941 U-CGGGGUC- (UGCAAC-U- C)-GACCCCG -UGAAGC-UG -GAAU-CGC- -UAGUA-AUC 3001 GG-AUA-(UC -AGCCAU)-G AUC-CGGUG- AAUAC-GUU- CCC-GGG-CC UU........ 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS str.2106 4376 bp RNA RNA 02-JUL-1998 DEFINITION str. SBR2106. str. SBR2106. ACCESSION No information KEYWORDS No information. SOURCE str. SBR2106. str. SBR2106. ORGANISM str. SBR2106. REFERENCE 1 AUTHORS Bond,P.L., Hugenholtz,P., Keller,J. and Blackall,L.L. TITLE Bacterial community structures of phosphate-removing and non-phosphate-removing activated sludges from sequencing batch reactors JOURNAL Appl. Environ. Microbiol. 61 (5), 1910-1916 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X84632|g871753 isolate_name= SBR2106 BASE COUNT 110 a 83 c 116 g 85 t 3982 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... UAGC-GGC-A -GGC-CU--A ACAC-AUGCA A-GUC-GAGG 121 G--------- -----GUAG- ---------- ---------- ---------- ---------- 181 ---------- ---------- ----UUA-CU (--UU----- ---------- ---------- 241 --------CG -)GG-UAA-- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --UGAG---- ---|------ ACCG-GCGC- 361 -A-CG-GG-U GCGU---AAC -GC-GUAUG- CAA--UCU-A C-CUUU---U -ACAG-G-GG 421 -AAU-AG-CC C--------- ------AG-- A(-GAAA-)U -UUGG-A--U UAAUGCC-CC 481 AU-AGU---- ---------- -------A-U GU-A--U-GA ---AUC-(-- --------GC 541 AU-------- -)-GGU---U UA-UA----C AU--UAAA-- ---GU----- ---------- 601 --(------- ---UCCA--- ---)------ ---------| -----A--C- G--GUA---- 661 ----AAAG-- AUG---A-|G CAUGC----- -GU|----CC C--AUUA-G- UUA-G---UU 721 GG-UA-AG-( GU-AAC-GG) -C-UUACC-A A|-GAC-GA- UGA------- -----UG-GG 781 U-AG-G-GG| -U-CCU--(G -AGA)-GGGA ----GA-U-- CCC-C|C-AC -ACUGG-U-A 841 (CUGA-GA-C ACG)--GACC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 AGG-AAUAUU G-GACAAU-- GG-GC-(GCA A)-GCC-UGA UCCA|-GCCA UGCC-GC-GU 961 G-C-AG-G-A A-GAA--G-C AU(C-UA-U- -G)GU-GUGU AAA--CUGC| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS F.aquatile 4376 bp RNA RNA 02-JUL-1998 DEFINITION Flavobacterium aquatile. ACCESSION No information KEYWORDS No information. SOURCE Flavobacterium aquatile. ORGANISM Flavobacterium aquatile. REFERENCE 1 AUTHORS Woese,C.R., Yang,D., Mandelco,L. and Stetter,K.O. TITLE The flexibacter-flavobacter connection JOURNAL Syst. Appl. Microbiol. 13, 161-165 (1990) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: M62797 ATCC 11947 = DSM 1132 BASE COUNT 417 a 317 c 424 g 336 t 2882 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~NUACGAUGA AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAU -NAAC-GC-- UAGC-GGC-A -GGC-UU--A ACAC-AUGCA A-GUC-GAGG 121 G--------- -----GUAU- ---------- ---------- ---------- ---------- 181 ---------- ---------- ----AUG-UC (--UU----- ---------- ---------- 241 --------CG -)GA-UAU-- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --AGAG---- ---|------ ACCG-GCGC- 361 -A-CG-GG-U GCGU---AAC -GC-GUAUG- CAA--UCU-A C-CUUU---U -ACAG-G-GG 421 -AAU-AG-CC C--------- ------AG-- A(-GAAA-)U -UUGG-A--U UAAUGCC-CC 481 AU-AGU---- ---------- -------A-U UA-U--U-AA ---AUG-(-- --------GC 541 AU-------- -)-CAU---U UU-AU----A AU--UAAA-- ---GU----- ---------- 601 --(------- ---CACA--- ---)------ ---------| -----A--C- G--GUA---- 661 ----AAAG-- AUG---A-|G CAUGC----- -GU|----CC C--AUUA-G- UUA-G---UU 721 GG-UA-AG-( GU-AAC-GG) -C-UUACC-A A|-GAC-AA- UGA------- -----UG-GG 781 N-AG-G-GG| -U-CCU--(G -AGA)-GGGA ----GA-U-- CCC-C|C-AC -ACUGG-U-A 841 (CUGA-GA-C ACG)--GACC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 AGG-AAUAUU G-GACAAU-- GG-GC-(GCA A)-GCC-NGA UCCA|-GCCA UGCC-GC-GU 961 G-C-AG-G-A A-GAC--G-G UC(C-UA-U- -G)GA-UUGU AAA--CUGC| UUUU-AU-AC 1021 --AG-GAA-- GA-AACA-CU --CCG-A--( -----CGUG- ---------) --UC-GG-AG 1081 ---------- -------C-U U-GA-CGGU- A-CUG-U-AG G-AA--UAAG ---------G 1141 -AUCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GAUC-C-- 1201 AAG-CGUUAU CC-GGAAUCA -UU-GGGU|U UAAA-GGGU- CCG-UAG-GC -G|-GU-UU- 1261 A-AU-AAG|U CAG---UGGU G-AAA-UC-U GG-UCG-C(- UC-A)A-CGA -UC-A-AAC- 1321 -GGCC-AUUG A-UAC-UGUU A-GACUU-GA AUU-----AU A-AG-GAAGU AAC-U|AGAA 1381 UA-UGUAGU- GUA-GCG(-G UGAAA)-UGC -UU-AGAU-A UU-ACAUGG- AAUA-CCAA- 1441 -U-U-GC(-G AA-G)GCAG- -GUUACUA-- ---------- ---------- ---------C 1501 UUA--UG-GA UUGACG-CUG AU-G------ -------GA- C-NAAA-GC- GU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGG A--UA-CU-- -------A|G -CU-GU-UGG -GA------- ---------- 1681 -(-GC-AA)- ---------- ---------- ---------- ---------U -CUCAG-UGG 1741 CU--AA---- --GC-(GAA- ---A)G-UG- AUAA-GUAUC C|C|A-CCU- G-GGGAGUAC 1801 GUU-C---(G CAA)---G-A AU-GAAACUC -AAA-GGAAU UG-ACGGN-N -G-N-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGAUA-C G)--CGAGGA 1921 A-CCUUA-CC AAG-GC-UUA AAU-GU|--- -------A-G ---AUUG--- -AC----AGG 1981 -ACU-G--(- GAAA-)-CAG -U-UUUU--- ---------- ---UC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GA-------- ---------| CAA-UU-UAC |---A|A--G 2161 GU-GC-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GC-C(-GUG A)-GGUGU-C 2221 AG-G-(UUAA -GU)-CCUAU AA-------- CGAG-C--GC AACCC-CU-G |-UU--GUU- 2281 AG--UUGC-C AG-CGA---- ---------- ---------- ---G(---UC ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----UCG|G 2701 G-AA-CU-C- U-AAC-GA-G A-CU-G-CCA --GU(-G--C AA)-ACU-GU -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAC-G-GC-C CUUAC-G-CC -UU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGA-C-GG -UA--CAGAG AGC-A-G-C- CA-CUG-C(G 2881 -CAA)GCAG- ---------- GA-GCGAA-U CUAC--AAAA -CC-G-UUC- UCAGUUCGGA 2941 U-CGGAGUC- (UGCAAC-U- C)-GACUCCG -UGAAGC-UG -GAAU-CGC- -UAGUA-AUC 3001 GG-AUA-(UC -AGCCAU)-G AUC-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-AAG--- --CCA-UGGA A--GC-UNG- GG-GU-ACCU -GAA-G-UCG 3121 G-U------- -GA-CC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGA------ G-CU-GC-CU A-GGGU-NNA ACU-GG-UA- ACU-NGGG-C 3301 U---AAGNN- GUAA-CAAGG UAGCN-GUAC C(GGA-A)G. .......... GAACACCUCC 3361 UUUC|U~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS env.PAD64 4376 bp RNA RNA 02-JUL-1998 DEFINITION unidentified soil. ACCESSION No information KEYWORDS No information. SOURCE unidentified soil. ORGANISM unidentified soil. REFERENCE 1 AUTHORS Ueda,T. TITLE Genetic diversity in soil bacteria JOURNAL Unpublished (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: D26251|g498456 library_source= unidentified soil bacterium from paddy field BASE COUNT 68 a 72 c 81 g 56 t 4099 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... ......CU-G |-UU--GUU- 2281 AG--UUGC-C AG-CGA---- ---------- ---------- ---G(---UC ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----UCG|G 2701 G-AA-CU-C- U-AAC-AA-G A-CU-G-CCA --GU(-G--U AA)-ACU-GU -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAC-G-GC-C CUUAC-G-CC -UU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-C-GG -UA--CAGAG AGC-A-G-C- CA-CUG-G(G 2881 -CGA)CCAG- ---------- GA-GCGAA-U CUAU--AAAA -CC-G-GUC- ACAGUUCGGA 2941 U-CGGAGUC- (UGCAAC-U- C)-GACUCCG -UGAAGC-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AG-CAC)-G CCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UU........ 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS env.PAD38 4376 bp RNA RNA 02-JUL-1998 DEFINITION unidentified soil. ACCESSION No information KEYWORDS No information. SOURCE unidentified soil. ORGANISM unidentified soil. REFERENCE 1 AUTHORS Ueda,T. TITLE Genetic diversity in soil bacteria JOURNAL Unpublished (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: D26225|g498427 library_source= unidentified soil bacterium from paddy field BASE COUNT 66 a 71 c 84 g 57 t 4098 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... ......CU-G |-UU--GUU- 2281 AG--UUGC-C AG-CGA---- ---------- ---------- ---G(---UC ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----UCG|G 2701 G-AA-CU-C- U-AAC-AA-G A-CU-G-CCA --GU(-G--U AA)-ACU-GU -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAC-G-GC-C CUUAC-G-CC -UU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-C-GG -UA--CAGAG GGC-A-G-C- CA-ACC-C(G 2881 -CGA)GGGG- ---------- GA-GCUAA-U CCCAG-AAAG -CC-G-GUC- GUAGUCCGGA 2941 U-UGCAGUC- (UGCAAC-U- C)-GACUGCA -UGAAGC-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AG-CAU)-G UCG-CGGUG- AAUAC-GUU- CCC-GGG-UC UU........ 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS F.columnar 4376 bp RNA RNA 02-JUL-1998 DEFINITION Flavobacterium columnare. ACCESSION No information KEYWORDS No information. SOURCE Flavobacterium columnare. ORGANISM Flavobacterium columnare. REFERENCE 1 AUTHORS Nakagawa,Y. and Yamasato,K. TITLE Phylogenetic diversity of the genus Cytophaga revealed by 16S rRNA sequencing and menaquinone analysis JOURNAL J. Gen. Microbiol. 139, 1155-1161 (1993) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: D12659|g425718 Former RDP Sids: Cy.columna NCIMB 2248 = ATCC 23463 NB: former name Cytophaga columnaris BASE COUNT 334 a 259 c 346 g 281 t 3156 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 ....G-GG-U GCGU---AAC -GC-GUAUG- CAA--UCU-A C-CUUG---U -ACNG-G-GN 421 -GAU-AG-CC C--------- ------AG-- A(-GAAA-)U -UUGG-A--U UAAUACC-CC 481 AU-AGU---- ---------- -------A-U UU-U--C-AU ---AUN-(-- --------GC 541 CU-------- -)-CAU---U UG-AU----U AU--UAAA-- ---GU----- ---------- 601 --(------- ---UCCA--- ---)------ ---------| -----A--C- G--GUA---- 661 ----CAAG-- AUG---A-|G CAUGC----- -GU|----CC C--AUUA-G- CUA-G---UU 721 GG-UG-UG-( GU-AAC-GG) -C-AUACC-A A|-GGC-NN- CGA------- -----UG-GG 781 U-AG-G-GG| -U-CCU--(G -AGA)-GGGA ----GA-U-- CCC-N|N-AC -ACUGG-U-A 841 (CUGA-GA-C ACG)--GACC -AGN-C-UCC -(UACG)--G GAG-GC-AU- C-A---NU-G 901 AGG-AAUAUU G-GUCAAU-- GG-GC-(GCA A)-GCC-UGA ACCA|-GCCA UGCC-GC-GU 961 G-C-AG-G-A U-GAC--G-G UC(C-UA-U- -G)GA-UUGU AAA--CUNC| UUUU-GU-AC 1021 --AG-GAA-- GA-AACN-CN --NNC-U--( -----UGUA- ---------) --AG-GG-AG 1081 ---------- -------C-U U-GA-CGGU- A-CUG-U-AA G-AA--UAAG ---------G 1141 -AUCGGCU-A GCUCC-GUG( CCA--GCANC NNCGGNN-A) U-A-C-GGAG |-UAUC-C-- 1201 NAG-CGUUAU CC-GGAAUCA -UU-GGGU|U UAAA-GGGU- CCG-UAG-GC -G|-GU-UU- 1261 U-AU-AAG|U CAG---UGGU N-AAA-UC-U GG-UCG-C(- UC-A)A-CGA -UC-A-AAC- 1321 -GGCC-AUUG A-UAC-UGUA A-GACUU-GA AUU-----AC U-UG-GAAGU AAC-U|AGAA 1381 UA-UGUAGU- GUA-GCG(-G UGAAA)-UGC -UU-AGAG-A UU-ACAUGG- AAUA-CCGA- 1441 -U-U-GC(-G AA-G)GCAG- -GUUACUA-- ---------- ---------- ---------C 1501 GAG--UA-UA UUGACG-CUG AU-G------ -------GA- C-NAAA-GC- GU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CNC- G-CC-GU--A 1621 AAC-G-AUGG A--UA-CU-- -------A|G -CU-GU-UUG -GA------- ---------- 1681 -(-NC-AA)- ---------- ---------- ---------- ---------U -CUGAG-UGG 1741 CU--AA---- --GC-(GAA- ---A)G-AG- AUAA-GUAUC C|C|A-CCU- G-GGGAGUAC 1801 GCU-C---(G CAA)---G-A GU-GAAACUC -AAA-GGAAU UG-ACGGG-N -N-C-CC--G 1861 C-A--CA-AU CGGAGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGAUA-C G)--CGAGGA 1921 U-CCUUA-CC AAG-GC-UUA AAU-GG|--- -------G-A ---AACG--- -AC----AGA 1981 -UUU-G--(- GAAA-)-CAN -A-NNNU--- ---------- ---UC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GA-------- ---------| CGA-AA-AAC |---A|A--G 2161 GU-GC-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GC-C(-GUG A)-GGUGU-U 2221 AN-G-(UUAA -GU)-CCUAU AA-------- CGAG-C--GC NACCC-CU-G |-UU--GCU- 2281 AG--UUGC-C AG-CGA---- ---------- ---------- ---G(---UC ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----UCG|G 2701 G-AA-CU-C- U-AGC-AA-G A-CU-G-CCG --GU(-G--C AA)-ACC-GC -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAC-G-GC-C CUUAC-G-CC -UU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGG-C-GG -UA--CAGAG AGC-A-G-C- CU-CUA-C(G 2881 -CAA)GUAG- ---------- GA-GCGAA-U CUAC--ANAA -CC-N-NUC- UCAGUUCGGA 2941 U-CGGAGUC- (UGCANC-U- U)-GACUCCG -UGAAGC-UU -GAUU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCCAU)-G CUG-CGGUG- AA........ .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS F.succini2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Flavobacterium succinicans. ACCESSION No information KEYWORDS No information. SOURCE Flavobacterium succinicans. ORGANISM Flavobacterium succinicans. REFERENCE 1 AUTHORS Nakagawa,Y. and Yamasato,K. TITLE Phylogenetic diversity of the genus Cytophaga revealed by 16S rRNA sequencing and menaquinone analysis JOURNAL J. Gen. Microbiol. 139, 1155-1161 (1993) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: D12673|g425734 Former RDP Sids: Cy.succin2 NB: former name Cytophaga succinicans BASE COUNT 333 a 259 c 352 g 286 t 3146 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 ....G-GG-U GCGU---AAC -GC-GUAUG- CAA--UCU-A C-CUUU---U -GCAG-A-GG 421 -GAU-AG-CC C--------- ------UG-- U(-GAAA-)U -UUGG-A--U UAAUACC-UC 481 AU-AGU---- ---------- -------A-U GU-G--A-GA ---AUG-(-- --------NC 541 AU-------- -)-CAU---U UU-CA----C AU--UAAA-- ---GU----- ---------- 601 --(------- ---CACA--- ---)------ ---------| -----A--C- G--GCA---- 661 ----AAAG-- AUG---A-|G CAUGC----- -GU|----CC C--AUUA-G- CUN-G---UU 721 GG-UA-AG-( GU-AAC-GG) -C-UUACC-A A|-GGC-AU- CNA------- -----UG-GG 781 U-AG-G-GG| -U-CCU--(G -AGA)-GGGA ----GA-U-- CCC-C|C-AC -ACUGG-U-A 841 (CUGA-GA-C ACG)--GACC -AGU-C-UCC -(UACG)--G GAG-GC-AU- C-N---NU-G 901 AGG-AAUAUU G-GACAAU-- GG-GC-(GCA A)-GCC-UGA UCCA|-GCCA UGCC-GC-GU 961 G-C-AG-G-A U-GAC--G-G UC(C-UA-U- -G)GA-UUGU AAA--CUNC| UUUU-GU-AC 1021 --AG-GAA-- GA-AACA-CU --CNC-N--( -----NGUG- ---------) --AG-GG-AG 1081 ---------- -------C-U U-GA-CGGU- A-CUG-U-AA G-AA--UAAG ---------G 1141 -AUCGGCU-A ACUCC-GUG( CCA--GCANN NNCGGNN-A) U-A-C-GGAG |-NAUC-C-- 1201 NAG-CGUUAU CC-GGAAUCA -UU-GGGU|U UAAA-GGGU- CCG-UAG-GC -G|-GU-UU- 1261 A-GU-AAG|U CAG---UGGU G-AAA-GC-C CA-UCG-C(- UC-A)A-CGG -UG-G-AAC- 1321 -GGCC-AUUG A-UAC-UGCU A-GACUU-GA AUU-----AU U-AG-GAAGU AAC-U|AGAA 1381 UA-UGUAGU- GUA-GCG(-G UGAAA)-UGC -UU-AGAG-A UU-ACAUGG- AAUA-CCAA- 1441 -U-U-GC(-G AA-G)GCAG- -GUUACUA-- ---------- ---------- ---------C 1501 UAA--UG-GA UUGACG-CUG AU-G------ -------GA- C-NAAA-GC- GU-GGG-UA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CNC- G-CC-GU--A 1621 AAC-G-AUGG A--UA-CU-- -------A|G -CU-GU-UGG -GC------- ---------- 1681 -(-GC-AA)- ---------- ---------- ---------- ---------G -UUCAG-UGG 1741 CU--AA---- --GC-(GAA- ---A)G-UG- AUAA-GUAUC C|C|A-CCU- G-GGGAGUAC 1801 GUU-C---(G CAA)---G-A AU-GAAACUC -AAA-GGAAU UG-ACGGG-N -N-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGAUA-C G)--CGAGGA 1921 A-CCUUA-CC AAG-GC-UUA AAU-GU|--- -------A-G ---AUUG--- -AC----CGG 1981 -UUU-G--(- GAAA-)-CAG -A-CUUU--- ---------- ---UC----- --(GC----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------A A-)------- GA-------- ---------| CAA-UU-UAC |---A|A--G 2161 GU-GC-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GC-C(-GUG A)-GGUGU-U 2221 AG-G-(UUAA -GU)-CCUAU AA-------- CGAG-C--GC AUCCC-CU-G |-UU--GUU- 2281 AG--UUGC-C AG-CGA---- ---------- ---------- ---G(---UC ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----UCG|G 2701 G-AA-CU-C- U-AAC-GA-G A-CU-G-CCA --GU(-G--C AA)-ACU-GU -GAGG-A-AG 2761 G-UG-GGG-N UG-ACG--UC -A-AAUC-AU CAC-G-GC-C CUUUC-G-CC -UU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-C-GG -UA--CAGAG AGC-A-G-C- CU-CUG-G(G 2881 -UGA)CCAG- ---------- GA-UCGAA-U CUAC--AAAG -CC-N-GUC- ACAGUUCGGA 2941 U-CGGAGUC- (UGCNNC-U- N)-GACUCCG -UGAAGC-UG -GAAU-CGC- -UAGUA-AUC 3001 GG-AUA-(UC -AGCCAU)-G AUC-CGGUG- AA........ .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS F.succinic 4376 bp RNA RNA 02-JUL-1998 DEFINITION Flavobacterium succinicans. ACCESSION No information KEYWORDS No information. SOURCE Flavobacterium succinicans. ORGANISM Flavobacterium succinicans. REFERENCE 1 AUTHORS Woese,C.R. JOURNAL Unpublished (1992) STANDARD No information COMMENTS Former RDP Sids: Cy.succini NB: former name Cytophaga "succinicans" BASE COUNT 393 a 312 c 427 g 315 t 2929 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~NUACGAUGA AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAU -GAAC-GC-- UAGC-GGC-A -GGC-UU--A ACAC-AUGCA A-GUC-GAGG 121 G--------- -----GUAU- ---------- ---------- ---------- ---------- 181 ---------- ---------- ----AGU-UC (--UU----- ---------- ---------- 241 --------CG -)GA-ACU-- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --AGAG---- ---|------ ACCG-GCGC- 361 -A-CG-GG-U GCGU---AAC -GC-GUAUG- CAA--UCU-A C-CUUU---U -GCAG-A-GG 421 -GAU-AG-CC C--------- ------AG-- A(-GAAA-)U -UUGG-A--U UAAUACC-UC 481 AU-AGU---- ---------- -------A-U GU-G--A-GA ---AUG-(-- --------GC 541 AU-------- -)-CAU---U UU-CA----C AU--UAAA-- ---GU----- ---------- 601 --(------- ---CACA--- ---)------ ---------| -----A--C- G--GCA---- 661 ----AAAG-- AUG---A-|G CAUGC----- -GU|----CC C--AUUA-G- CUN-G---UU 721 GG-UA-AG-( GU-AAC-GG) -C-UUACC-A A|-GGC-AA- CGA------- -----UG-GG 781 U-AG-G-GG| -U-CCU--(G -AGA)-GGGA ----GA-U-- CCC-C|C-AC -ACUGG-U-A 841 (CUGA-GA-C ACG)--GACC -AGN-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 AGG-AAUAUU G-GACAAU-- GG-GC-(GCA A)-GCC-NGA UCCA|-GCCA UGCC-GN-GU 961 G-C-AG-G-A U-GAC--G-G UC(C-UA-U- -G)GA-UUGU AAA--CUGC| UUUU-GU-AC 1021 --AG-GAA-- GA-AACA-CU --CCC-U--( -----CGUG- ---------) --AG-GG-AG 1081 ---------- -------C-U U-GA-CGGU- A-CUG-U-AA G-AA--UAAG ---------G 1141 -AUCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGNUN-A) U-A-C-GGAG |-NAUC-C-- 1201 NAG-CGUUAU CC-GGAAUCA -UU-GGGU|U UAAA-GGGU- CCG-UAG-GC -G|-GU-UU- 1261 A-GU-AAG|U CAG---UGGU G-AAA-GC-C CA-UCG-C(- UC-A)A-CGG -UG-G-AAC- 1321 -GGCC-AUUG A-UAC-UGCU A-GACUU-GA AUU-----AU U-AG-GAAGU AAC-U|AGAA 1381 UA-UGUAGU- GUA-GCG(-G UGAAA)-UGC -UU-AGAG-A UU-ACAUGG- AAUA-CCAA- 1441 -U-U-GC(-G AA-G)GCAG- -GUUACUA-- ---------- ---------- ---------C 1501 UAA--UG-GA UUGACG-CUG AU-G------ -------GA- C-NAAA-GC- GU-GGG-UA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGG A--UA-CU-- -------A|G -CU-GU-UGG -GC------- ---------- 1681 -(-GC-AA)- ---------- ---------- ---------- ---------G -UUCAG-UGG 1741 CU--AA---- --GC-(GAA- ---A)G-UG- AUAA-GUAUC C|C|A-CCU- G-GGGAGUAC 1801 GUU-C---(G CAA)---G-A AU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGNUA-C G)--CGAGGA 1921 A-CCUUA-CC AAG-GC-UUA AAU-GU|--- -------A-G ---AUUG--- -AC----CGG 1981 -UUU-G--(- GAAA-)-CAG -A-CUUU--- ---------- ---UC----- --(GC----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------A A-)------- GA-------- ---------| CAA-UU-UAC |---A|A--G 2161 GU-GC-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GC-C(-GUG A)-GGUGU-C 2221 AG-G-(UUAA -GU)-CCUAU AA-------- CGAG-C--GC AACCC-CU-G |-UU--GUU- 2281 AG--UUGC-C AG-CGA---- ---------- ---------- ---G(---UC ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----UCG|G 2701 G-AA-CU-C- U-AAC-GA-G A-CU-G-CCA --GU(-G--C AA)-ACU-GU -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAC-G-GC-C CUUAC-G-CC -UU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-C-GG -UA--CAGAG AGC-A-G-C- CA-CUG-G(G 2881 -UGA)CCAG- ---------- GA-GCGAA-U CUAC--AAAG -CC-G-GNC- ACAGUUCGGA 2941 U-CGGAGUC- (UGCAAC-U- C)-GACUCCG -UGAAGC-UG -GAAU-CGC- -UAGUA-AUC 3001 GG-AUA-(UC -AGCCAU)-G AUC-CGGUG- AAUAC-GUU- CCC-GGG-CN NUGUA----C 3061 ACACCGCCC- GUC-AAG--- --NCA-UGGA A--GC-UGG- GG-GU-GCCU -GAA-G-UCG 3121 G-U------- -GA-CC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGA------ G-CU-GC-CU A-GGGU-AAA ACU-GG-UA- ACU-AGG... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS F.psychro3 4376 bp RNA RNA 02-JUL-1998 DEFINITION Flavobacterium psychrophilum. ACCESSION No information KEYWORDS No information. SOURCE Flavobacterium psychrophilum. ORGANISM Flavobacterium psychrophilum. REFERENCE 1 AUTHORS Nakagawa,Y. and Yamasato,K. TITLE Phylogenetic diversity of the genus Cytophaga revealed by 16S rRNA sequencing and menaquinone analysis JOURNAL J. Gen. Microbiol. 139, 1155-1161 (1993) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: D12670|g425729 Former RDP Sids: Cy.psychr3 NCIMB 1947 = DSM 3660 (T) NB: former name Cytophaga psychrophila BASE COUNT 347 a 256 c 341 g 286 t 3146 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 ....G-GG-U GCGU---AAC -GC-GUAUG- CAA--UCU-A C-CUUU---U -ACAG-A-GG 421 -GAU-AG-CC C--------- ------AG-- A(-NAAA-)U -UUGN-A--U UAAUACC-UN 481 AU-AGU---- ---------- -------A-U AG-U--N-AG ---UUG-(-- --------GC 541 AU-------- -)-CAA---C AC-AC----U AU--UAAA-- ---GU----- ---------- 601 --(------- ---CACA--- ---)------ ---------| -----A--C- G--GUA---- 661 ----AAAG-- AUG---A-|G CAUGC----- -GU|----CC C--AUUA-G- CUA-G---UU 721 GG-UA-AG-( GU-AAC-GG) -C-UUACC-A A|-GGC-AN- CGA------- -----UG-GG 781 U-AG-G-GG| -U-CCU--(G -AGA)-GGGA ----GA-U-- CCC-C|C-AC -ACUGG-U-A 841 (CUGA-GA-C ACG)--GACC -AGN-C-UCC -(UACG)--G GAG-GC-AG- C-N---NU-G 901 AGG-AAUAUU G-GUCAAU-- GG-GC-(GCA A)-GCC-UGA ACCA|-GCCA UGCC-GC-GU 961 G-C-AG-G-A U-GAC--G-G UC(C-UA-U- -G)GA-UUGU AAA--CUNC| UUUU-GC-AU 1021 --AG-GAA-- GA-AACA-CU --NNC-U--( -----CGUG- ---------) --AG-GU-AN 1081 ---------- -------C-U U-GA-CGGU- A-CUG-U-GA G-AA--UAAG ---------G 1141 -AUCGGCU-A ACUCC-GUG( CCA--GCANC NNCGGUN-A) U-A-C-GGAG |-NAUC-C-- 1201 AAG-CGUUAU CC-GGAAUCA -UU-GGGU|U UAAA-GGGU- CCG-UAG-GC -G|-GC-CA- 1261 G-AU-AAG|U CAG---UGGU G-AAA-GC-C CA-UCG-C(- UC-A)A-CGA -UG-G-AAC- 1321 -GGCC-AUUG A-UAC-UGUU U-GGCUU-GA AUU-----AU U-UG-GAAGU AAC-U|AGAA 1381 UA-UGUAGU- GUA-GCG(-G UGAAA)-UGC -UU-AGAG-A UU-ACAUGG- AAUA-CCAA- 1441 -U-U-GC(-G AA-G)GCAG- -GUUACUA-- ---------- ---------- ---------C 1501 AAA--UU-GA UUGACG-CUG AU-G------ -------GA- C-GAAA-GC- GU-GGG-UA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CNC- N-CC-GU--A 1621 AAC-G-AUGG A--UA-CU-- -------A|G -CU-GU-UGG -GA------- ---------- 1681 -(-NC-AA)- ---------- ---------- ---------- ---------U -CUCAG-UGG 1741 CU--AA---- --GC-(GAA- ---A)G-UG- AUAA-GUAUC C|C|A-CCU- G-GGGAGUAC 1801 GUU-C---(G CAA)---G-A AU-GAAACUC -AAA-GGAAU UG-ACGGG-N -N-N-CC--G 1861 C-A--CA-AU CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGAUA-C G)--CGAGGA 1921 A-CCUUA-CC AAG-GC-UUA AAU-GU|--- -------A-G ---AUUG--- -AC----CGG 1981 -UUU-G--(- GAAA-)-CAG -A-CUUU--- ---------- ---UC----- --(GC----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------A A-)------- GA-------- ---------| CAA-UU-UAC |---A|A--G 2161 GU-GC-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GC-C(-GUG A)-GGUGU-U 2221 AN-G-(UUAA -GU)-CCUAU AA-------- CGAG-C--GC AACCC-CU-G |-UU--GUU- 2281 AG--UUGC-C AG-CGA---- ---------- ---------- ---G(---UU ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----UUG|G 2701 G-AA-CU-C- U-AGC-AA-G A-CU-G-CCA --GU(-G--U AA)-ACU-GU -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAC-G-GC-C CUUAC-G-CC -UU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-C-GG -UA--CAGAG AGC-A-G-C- CA-CUA-C(G 2881 -CAA)GUAG- ---------- GA-UCGAA-U CUAU--AAAA -CC-N-NUC- UCAGUUCGGA 2941 U-CGGAGUC- (UGCAAC-U- C)-GACUCCG -UGAAGC-UG -GAAU-CGC- -UAGUA-AUC 3001 GG-AUA-(UC -AGCCAU)-G AUC-CGGUG- AA........ .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS F.hydatis2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Flavobacterium hydatis. ACCESSION No information KEYWORDS No information. SOURCE Flavobacterium hydatis. ORGANISM Flavobacterium hydatis. REFERENCE 1 AUTHORS Nakagawa,Y. and Yamasato,K. TITLE Phylogenetic diversity of the genus Cytophaga revealed by 16S rRNA sequencing and menaquinone analysis JOURNAL J. Gen. Microbiol. 139, 1155-1161 (1993) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: D12656|g425715 Former RDP Sids: Cy.aquati2 NB: former name Cytophaga aquatilis BASE COUNT 350 a 260 c 348 g 282 t 3136 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 ....G-GG-U GCGU---AAC -GC-GUAUG- CAA--UCU-G C-CUUU---U -ACAG-A-GG 421 -GAU-AG-CC C--------- ------AG-- A(-GAAA-)U -UUGG-A--U UAAUACC-UC 481 AU-AGC---- ---------- -------A-U AG-C--A-GG C--AUG-(-- --------GC 541 AU-------- -)GCAA---C CA-GC----A AU--UAAA-- ---GU----- ---------- 601 --(------- ---CACA--- ---)------ ---------| -----A--C- G--GUA---- 661 ----AAAG-- AUG---A-|G CAUGC----- -NU|----CC C--AUUA-G- CUA-G---UU 721 GG-UA-AG-( GU-AAC-GG) -C-UUACC-A A|-GGC-UA- CGA------- -----UG-GG 781 U-AG-G-GG| -U-CCU--(G -AGA)-GGGA ----GA-U-- CCC-C|C-AC -ACUGG-U-A 841 (CUGA-GA-C ACG)--GACC -AGN-C-UCC -(UACG)--G GAG-GC-AG- C-N---GU-G 901 AGG-AAUAUU G-GACAAU-- GG-GC-(GCA A)-GCC-UGA UCCA|-GCCA UGCC-GC-GU 961 G-C-AG-G-A U-GAC--G-G UC(C-UA-U- -G)GA-UUGU AAA--CUNC| UUUU-GU-AC 1021 --AG-GAA-- GA-AACA-CU --GGU-U--( -----CGUG- ---------) --AA-CC-AG 1081 ---------- -------C-U U-GA-CGGU- A-CUG-U-AA G-AA--UAAG ---------G 1141 -AUCGGCU-A ACUCC-GUG( CCA--GCANN NNCGGUN-A) U-A-C-GGAG |-NAUC-C-- 1201 AAG-CGUUAU CC-GGAAUCA -UU-GGGU|U UAAA-GGGU- CCG-UAG-GC -G|-GU-UU- 1261 A-AU-AAG|U CAG---UGGU G-AAA-GC-C CA-UCG-C(- UC-A)A-CGG -UG-G-AAC- 1321 -GGCC-AUUG A-UAC-UGUU A-AACUU-GA AUU-----AU U-AG-GAAGU AAC-U|AGAA 1381 UA-UGUAGU- GUA-GCG(-G UGAAA)-UGC -UU-AGAG-A UU-ACAUGG- AAUA-CCAA- 1441 -U-U-GC(-G AA-G)GCAG- -GUUACUA-- ---------- ---------- ---------C 1501 UAA--UU-GA UUGACG-CUG AU-G------ -------GA- C-GAAA-GC- GU-GGG-UA- 1561 GC-GAA-CA- -GG(AUUA-G AUUC)-CCU- ----GGUA-G UC----CNC- G-CC-GU--A 1621 AAC-G-AUGG A--UA-CU-- -------A|G -CU-GU-UGG -GA------- ---------- 1681 -(-NC-AA)- ---------- ---------- ---------- ---------U -CUCAG-UGG 1741 CU--AA---- --GC-(GAA- ---A)G-UG- AUAA-GUAUC C|C|A-CCU- G-GGGAGUAC 1801 GUU-C---(G CAA)---G-A AU-GAAACUC -AAA-GGAAU UG-ACGGG-N -N-C-CC--G 1861 C-A--CA-AU CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGAUA-C G)--CGAGGA 1921 A-CCUUA-CC AAG-GC-UUA AAU-GU|--- -------A-G ---AUUG--- -AC----CGG 1981 -UUU-G--(- GAAA-)-CAG -A-UCUU--- ---------- ---UC----- --(GC----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------A A-)------- GA-------- ---------| CAA-UU-UAC |---A|A--G 2161 GU-GC-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GC-C(-GUG A)-GGUGU-U 2221 AN-G-(UUAA -GU)-UCUAU AA-------- CGAG-C--GC AACCC-CU-G |-UU--GUU- 2281 AG--UUGC-C AG-CGA---- ---------- ---------- ---G(---UN ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----UCG|G 2701 G-AA-CU-C- U-AAC-AA-G A-CU-G-CCA --GU(-G--C AA)-ACU-GU -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAC-G-GC-C CUUAC-G-CC -UU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-C-GG -UA--CAGAG AGC-A-G-C- CA-CUG-G(G 2881 -CGA)CCAG- ---------- GA-UCGAA-U CUAU--AAAA -CC-G-NNC- ACAGUUCGGA 2941 U-CGGAGUC- (UGCAAC-U- U)-GACUCCG -UGAAGC-UG -GAAU-CGC- -UAGUA-AUC 3001 GG-AUA-(UC -AGCCAU)-G AUC-CGGUG- AA........ .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS F.hydatis 4376 bp RNA RNA 02-JUL-1998 DEFINITION Flavobacterium hydatis. ACCESSION No information KEYWORDS No information. SOURCE Flavobacterium hydatis. ORGANISM Flavobacterium hydatis. REFERENCE 1 AUTHORS Gherna,R. and Woese,C.R. TITLE A partial phylogenetic analysis of the "Flavobacter-Bacteroides" phylum: basis for taxonomic restructuring JOURNAL Syst. Appl. Microbiol. 15, 513-321 (1992) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: M58764 Former RDP Sids: Cy.aquatil ATCC 29551 = DSM 2063 = NCIMB 2215 (T) NB: former name Cytophaga aquatilis BASE COUNT 398 a 313 c 419 g 315 t 2931 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~NUACGAUGA AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAU -NAAC-GC-- UAGC-GGC-A -GGC-UU--A ACAC-AUGCA A-GUC-GAGG 121 G--------- -----GUAU- ---------- ---------- ---------- ---------- 181 ---------- ---------- ----AAU-UC (--UU----- ---------- ---------- 241 --------CG -)GG-AUU-- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --AGAG---- ---|------ ACCG-GCGC- 361 -A-CG-GG-U GCGU---AAC -GC-GUAUG- CAA--UCU-G C-CUUU---U -ACAG-A-GG 421 -GAU-AG-CC C--------- ------AG-- A(-GAAA-)U -UUGG-A--U UAAUACC-UC 481 AU-AGC---- ---------- -------A-U UG-C--A-GG ---AUG-(-- --------GC 541 AU-------- -)-CAU---C CA-GC----A AU--UAAA-- ---GU----- ---------- 601 --(------- ---CACA--- ---)------ ---------| -----A--C- G--GUA---- 661 ----AAAG-- AUG---A-|G CAUGC----- -GU|----CC C--AUUA-G- CUA-G---UU 721 GG-UA-AG-( GU-AAC-GG) -C-UUACC-A A|-GGC-UN- CGA------- -----UG-GG 781 N-AG-G-GG| -U-CCU--(G -AGA)-GGGA ----GA-U-- CCC-C|C-AC -ACUGG-U-A 841 (CUGA-GA-C ACG)--GACC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 AGG-AAUAUU G-GACAAU-- GG-GC-(GCA A)-GCC-NNA UCCA|-GCCA UGCC-GC-GU 961 G-C-AG-G-A U-GAC--G-G UC(C-UA-U- -G)GA-UUGU AAA--CUNC| NUUU-GU-AC 1021 --AG-GAA-- GA-AACA-CU --GGU-U--( -----CGUG- ---------) --AA-CC-AG 1081 ---------- -------C-U U-GA-CGGU- A-CUG-U-AA G-AA--UAAG ---------G 1141 -AUCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGNN-A) U-A-C-GGAG |-NAUC-C-- 1201 NAG-CGUUAU CC-GGAAUCA -UU-GGGU|U UAAA-GGGU- CCG-UAG-GC -G|-GU-UU- 1261 A-AU-AAG|U CAG---UGGU G-AAA-GC-C CA-UCG-C(- UC-A)A-CGG -UG-G-AAC- 1321 -GGCC-AUUG A-UAC-UGUU A-AACUU-GA AUU-----AU U-AG-GAAGU AAC-U|AGAA 1381 UA-UGUAGU- GUA-GCG(-G UGAAA)-UGC -UU-AGAG-A UU-ACAUGG- AAUA-CCAA- 1441 -U-U-GC(-G AA-G)GCAG- -GUUACUA-- ---------- ---------- ---------C 1501 UAA--UU-GA UUGACG-CUG AU-G------ -------GA- C-NAAA-GC- GU-GGG-UA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGG A--UA-CU-- -------A|G -CU-GU-UGG -GA------- ---------- 1681 -(-GC-AA)- ---------- ---------- ---------- ---------U -CUCAG-UGG 1741 CU--NA---- --GC-(GAA- ---A)G-UG- AUAA-GUAUC C|C|A-CCU- G-GGGAGUAC 1801 GUU-C---(G CAA)---G-A AU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CN--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGAUA-C G)--CGAGGA 1921 A-CCUUA-CC AAG-GC-UUA AAU-GU|--- -------A-G ---AUUG--- -AC----CGG 1981 -UUU-G--(- GAAA-)-CAG -A-UCUU--- ---------- ---UC----- --(GC----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------A A-)------- GA-------- ---------| CAA-UU-UAC |---A|A--G 2161 GU-GC-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GC-C(-GUG A)-GGUGU-C 2221 AG-G-(UUAA -GU)-CCUAU AA-------- CGAG-C--GC AACCC-CU-G |-UU--GUU- 2281 AG--UUGC-C AG-CGA---- ---------- ---------- ---G(---UC ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----UCG|G 2701 G-AA-CU-C- U-AAC-AA-G A-CU-G-CCA --GU(-G--C AA)-ACU-GU -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAC-G-GC-C CUUAC-G-CC -UU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-C-GG -UA--CAGAG AGC-A-G-C- CA-CUG-G(G 2881 -CGA)CCAG- ---------- GA-GCGAA-U CUAU--AAAA -CC-G-GUC- ACAGUUCGGA 2941 U-CGGAGUC- (UGCAAC-U- C)-GACUCCG -UGAAGC-UG -GAAU-CGC- -UAGUA-AUC 3001 GG-AUA-(UC -AGCCAU)-G AUC-CGGUG- AAUAC-GUU- CCC-NGG-CC UUGUA----C 3061 ACACCGCCC- GUC-AAG--- --CCA-UGGA A--GC-UGG- GG-GU-GCCU -GAA-G-UCG 3121 G-U------- -GA-CC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGA------ G-CU-GC-CU A-GGGU-NAA ACU-GG-UA- ACN-AGGG.. 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS F.johnsoni 4376 bp RNA RNA 02-JUL-1998 DEFINITION Flavobacterium johnsoniae str. MYX.1.1.1 ATCC 17061. ACCESSION No information KEYWORDS No information. SOURCE Flavobacterium johnsoniae str. MYX.1.1.1 ATCC 17061. ORGANISM Flavobacterium johnsoniae. REFERENCE 1 AUTHORS Gherna,R. and Woese,C.R. TITLE A phylogenetic analysis of the "Flavobacter-Bacteroides" phylum: basis for taxonomic restructuring JOURNAL Syst. Appl. Microbiol. 15, 513-521 (1992) STANDARD No information COMMENTS Organism information Culture collection: ATCC 17061 Sequence information (bases 1 to 4376) Corresponding GenBank entry: M59051 Former RDP Sids: Cy.johns.a ATCC 17061 = DSM 2064 = NCIMB 11054 isolate_name= MYX.1.1.1 NB: former name Cytophaga johnsonae BASE COUNT 391 a 310 c 426 g 315 t 2934 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~NUACGAUGA AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAU -NAAC-GC-- UAGC-GGC-A -GGC-UU--A ACAC-AUGCA A-GUC-GAGG 121 G--------- -----GUAG- ---------- ---------- ---------- ---------- 181 ---------- ---------- ----AAG-UC (--UU----- ---------- ---------- 241 --------CG -)GG-CUU-- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --UGAG---- ---|------ ACCG-GCGC- 361 -A-CG-GG-U GCGU---AAC -GC-GUAUG- CAA--UCU-G C-CUUU---C -ACAG-A-GG 421 -GAU-AG-CC C--------- ------AG-- A(-GAAA-)U -UUGG-A--U UAAUACC-UN 481 AU-AGU---- ---------- -------A-U UA-U--A-GA ---GYG-(-- --------GC 541 AU-------- -)-CAC---U UU-RU----A AU--UAAA-- ---GU----- ---------- 601 --(------- ---CACA--- ---)------ ---------| -----A--C- G--GUG---- 661 ----AAAG-- AUG---A-|G CAUGC----- -GU|----CC C--AUUA-G- CUN-G---UU 721 GG-UA-AG-( GU-AAC-GG) -C-UUACC-A A|-GGC-CA- CGA------- -----UG-GG 781 N-AG-G-GG| -U-CCU--(G -AGA)-GGGA ----GA-U-- CCC-C|C-AC -ACUGG-U-A 841 (CUGA-GA-C ACG)--GACC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 AGG-AAUAUU G-GUCAAU-- GG-AC-(GCA A)-GUC-UGA ACCA|-GCCA UGCC-GC-GU 961 G-C-AG-G-A U-GAC--G-G UC(C-UA-U- -G)GA-UUGU AAA--CUGC| NUUU-GU-AC 1021 --GA-GAA-- GA-AACA-CU --CCU-A--( -----UGUA- ---------) --UA-GG-AG 1081 ---------- -------C-U U-GA-CGGU- A-UCG-U-AA G-AA--UAAG ---------G 1141 -AUCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGNN-A) U-A-C-GGAG |-NAUC-C-- 1201 NAG-CGUUAU CC-GGAAUCA -UU-GGGU|U UAAA-GGGU- CCG-UAG-GC -G|-GU-UU- 1261 A-GU-AAG|U CAG---UGGU G-AAA-GC-C CA-UCG-C(- UC-A)A-CGG -UG-G-AAC- 1321 -GGCC-AUUG A-UAC-UGCU G-AACUU-GA AUU-----AC U-GG-GAAGU AAC-U|AGAA 1381 UA-UGUAGU- GUA-GCG(-G UGAAA)-UGC -UU-AGAU-A UU-ACAUGG- AAUA-CCAA- 1441 -U-U-GC(-G AA-G)GCAG- -GUUACUA-- ---------- ---------- ---------C 1501 CNG--NU-UA UUGACG-CUG AU-G------ -------GA- C-NAAA-GC- GU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGG A--UA-CU-- -------A|G -CU-GU-UGG -GC------- ---------- 1681 -(-GC-AA)- ---------- ---------- ---------- ---------G -UUCAG-UGG 1741 CU--NA---- --GC-(GAA- ---A)G-UG- AUAA-GUAUC C|C|A-CCU- G-GGGAGUAC 1801 GAA-C---(G CAA)---G-U UU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CN--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGAUA-C G)--CGAGGA 1921 A-CCUUA-CC AAG-GC-UUA AAU-GC|--- -------A-G ---ACUG--- -AC----CGA 1981 -UUU-G--(- GAAA-)-CAG -A-UCUU--- ---------- ---UC----- --(GC----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------A A-)------- GA-------- ---------| CAG-UU-UAC |---A|A--G 2161 GU-GC-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GC-C(-GUG A)-GGUGU-C 2221 AG-G-(UUAA -GU)-CCUAU AA-------- CGAG-C--GC AACCC-CU-G |-UU--GUU- 2281 AG--UUGC-C AG-CGA---- ---------- ---------- ---G(---UG ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----UCG|G 2701 G-AA-CU-C- U-AAC-AA-G A-CU-G-CCA --GU(-G--C AA)-ACU-GU -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAC-G-GC-C CUUAC-G-CC -UU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-C-GG -UA--CAGAG AGC-A-G-C- CA-CUG-G(G 2881 -UGA)CCAG- ---------- GA-GCGAA-U CUAU--AAAG -CC-G-GNC- ACAGUUCGGA 2941 U-CGGAGUC- (UGCAAC-U- C)-GACUCCG -UGAAGC-UG -GAAU-CGC- -UAGUA-AUC 3001 GG-AUA-(UC -AGCCAU)-G AUC-CGGUG- AAUAC-GUU- CCC-NGG-CN UUGUA----C 3061 ACACCGCNC- GUC-AAG--- --NCA-UGGA A--GC-UGG- GG-GU-GCCU -GAA-G-UCG 3121 G-U------- -GA-CC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGA------ G-CU-GC-CU A-GGGU-AAA ACU-GG-UA- ACU-AGGG-C 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Flx.aurant 4376 bp RNA RNA 02-JUL-1998 DEFINITION Flexibacter aurantiacus str. Lewin DWO ATCC 23107 (T). ACCESSION No information KEYWORDS No information. SOURCE Flexibacter aurantiacus str. Lewin DWO ATCC 23107 (T). ORGANISM Flexibacter aurantiacus. REFERENCE 1 AUTHORS Woese,C.R., Yang,D., Mandelco,L. and Stetter,K.O. TITLE The flexibacter-flavobacter connection JOURNAL Syst. Appl. Microbiol. 13, 161-165 (1990) STANDARD No information COMMENTS Organism information Culture collection: ATCC 23107 (T) Sequence information (bases 1 to 4376) Corresponding GenBank entry: M62792 isolate_name= Lewin DWO BASE COUNT 393 a 314 c 422 g 317 t 2930 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~NUACGAUGA AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAU -NAAC-GC-- UAGC-GGC-A -GGC-UU--A ACAC-AUGCA A-GUC-GAGG 121 G--------- -----GUAG- ---------- ---------- ---------- ---------- 181 ---------- ---------- ----AAG-UC (--UU----- ---------- ---------- 241 --------CG -)GA-CUU-- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --UGAG---- ---|------ ACCG-GCGC- 361 -A-CG-GG-U GCGU---AAC -GC-GUAUG- CAA--UCU-G C-CNUU---C -ACAG-A-GG 421 -GAU-AG-CC C--------- ------AG-- A(-GAAA-)U -UUGG-A--U UAAUACC-UC 481 AU-AGU---- ---------- -------A-U UA-U--A-GA ---GUG-(-- --------GC 541 AU-------- -)-CAC---U UU-AU----A AU--UAAA-- ---GU----- ---------- 601 --(------- ---CACA--- ---)------ ---------| -----A--C- G--GUG---- 661 ----AAAG-- AUG---A-|G CAUGC----- -GU|----CC C--AUUA-G- CUA-G---UU 721 GG-UA-AG-( GU-AAC-GG) -C-UUACC-A A|-GGC-AA- CGA------- -----UG-GG 781 U-AG-G-GG| -U-CCU--(G -AGA)-GGGA ----GA-U-- CCC-C|C-AC -ACUGG-U-A 841 (CUGA-GA-C ACG)--GACC -NGN-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 AGG-AAUAUU G-GUCAAU-- GG-AC-(GCA A)-GUC-UGA ACCA|-GCCA UGCC-GC-GU 961 G-C-AG-G-A U-GAC--G-G UC(C-UA-U- -G)GA-UUGU AAA--CUGC| UUUU-GU-AC 1021 --GA-GAA-- GA-AACA-CU --CCU-A--( -----UGUA- ---------) --UA-GG-AG 1081 ---------- -------C-U U-GA-CGGU- A-UCG-U-AA G-AA--UAAG ---------G 1141 -AUCGGCU-A ACUCC-GUG( CCA--GCAGC CNCGNNN-A) U-A-C-GGAG |-NAUC-C-- 1201 NAG-CGUUAU CC-GGAAUCA -UU-GGGU|U UAAA-GGGU- CCG-UAG-GC -G|-GU-UU- 1261 A-GU-AAG|U CAG---UGGU G-AAA-GC-C CA-UCG-C(- UC-A)A-CGG -UG-G-AAC- 1321 -GGCC-AUUG A-UAC-UGCU G-AACUU-GA AUU-----AC U-GG-GAAGU AAC-U|AGAA 1381 UA-UGUAGU- GUA-GCG(-G UGAAA)-UGC -UU-AGAU-A UU-ACAUGG- AAUA-CCAA- 1441 -U-U-GC(-G AA-G)GCAG- -GUUACUA-- ---------- ---------- ---------C 1501 CAG--NC-UA UUGACG-CUG AU-G------ -------GA- C-NAAA-GC- GU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGG A--UA-CU-- -------A|G -CU-GU-UGG -GC------- ---------- 1681 -(-GC-AA)- ---------- ---------- ---------- ---------G -UUCAG-UGG 1741 CU--AA---- --GC-(GAA- ---A)G-UG- AUAA-GUAUC C|C|A-CCU- G-GGGAGUAC 1801 GAA-C---(G CAA)---G-U UU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CN--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGNUA-C G)--CGAGGA 1921 A-CCUUA-CC AAG-GC-UUA AAU-GC|--- -------A-G ---ACUG--- -AC----CGA 1981 -UUU-G--(- GAAA-)-CAG -A-UCUU--- ---------- ---UC----- --(GC----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------A A-)------- GA-------- ---------| CAG-UU-UAC |---A|A--G 2161 GU-GC-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GC-C(-GUG A)-GGUGU-C 2221 AG-G-(UUAA -GU)-CCUAU AA-------- CGAG-C--GC AACCC-CU-G |-UU--GUU- 2281 AG--UUGC-C AG-CGA---- ---------- ---------- ---G(---UC ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----UCG|G 2701 N-NA-CU-C- U-AAC-AA-G A-CU-G-CCA --GU(-G--C AA)-ACU-GU -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAC-G-GC-C CUUAC-G-CC -UU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-C-GG -UA--CAGAG AGC-A-G-C- CA-CUG-G(G 2881 -UGA)CCAG- ---------- GA-GCGAA-U CUAU--AAAG -CC-G-GUC- ACAGUUCGGA 2941 U-CGGAGUC- (UGCAAC-U- C)-GACUCCG -UGAAGC-UG -GAAU-CGC- -UAGUA-AUC 3001 GG-AUA-(UC -AGCCAU)-G AUC-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-AAG--- --NCA-UGGA A--GC-UGG- GG-GU-GCCU -GAA-G-UCG 3121 G-U------- -GA-CC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGA------ G-CU-GC-CU A-GGGU-AAA ACU-GG-UA- ACU-AGGG-C 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS F.johnson3 4376 bp RNA RNA 02-JUL-1998 DEFINITION Flavobacterium johnsoniae. ACCESSION No information KEYWORDS No information. SOURCE Flavobacterium johnsoniae. ORGANISM Flavobacterium johnsoniae. REFERENCE 1 AUTHORS Nakagawa,Y. and Yamasato,K. TITLE Phylogenetic diversity of the genus Cytophaga revealed by 16S rRNA sequencing and menaquinone analysis JOURNAL J. Gen. Microbiol. 139, 1155-1161 (1993) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: D12664|g425723 Former RDP Sids: Cy.johnso3 NB: former name Cytophaga johnsonae BASE COUNT 339 a 260 c 347 g 290 t 3140 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 ....G-GG-U GCGU---AAC -GC-GUAUG- CAA--UCU-G C-CUUU---C -ACAG-A-GG 421 -GAU-AG-CC C--------- ------AG-- A(-GAAA-)U -UUGG-A--U UAAUACC-UC 481 AU-AGU---- ---------- -------A-U UA-U--A-GA ---GNG-(-- --------GC 541 AU-------- -)-CNC---U UU-AU----A AU--UAAA-- ---GU----- ---------- 601 --(------- ---CACA--- ---)------ ---------| -----A--C- G--GUG---- 661 ----AAAG-- AUG---A-|G CAUGC----- -GU|----CC C--AUUA-G- CUA-G---UU 721 GG-UA-AG-( GU-AAC-GG) -C-UUACC-A A|-GGC-CA- CGA------- -----UG-GG 781 U-AG-G-GG| -U-CCU--(G -AGA)-GGGA ----GA-U-- CCC-C|C-AC -ACUGG-U-A 841 (CUGA-GA-C ACG)--GACC -NGU-C-UCC -(UACG)--G GAG-GC-AN- C-N---NU-G 901 UGG-AAUAUU G-GUCAAU-- GG-AC-(GCA A)-GUC-UGA ACCA|-GCCA UGCC-GC-GU 961 G-C-AG-G-A U-GAC--G-G UC(C-UA-U- -G)GA-UUGU AAA--CUUC| UUUU-GU-AC 1021 --GA-GAA-- GA-AACA-CN --CCU-A--( -----UGUA- ---------) --UA-GG-AG 1081 ---------- -------C-U U-GA-CGGU- A-UCG-U-AA G-AA--UAAG ---------G 1141 -AUCGGCU-A ACUCC-GUG( CCA--GCNNN NNCGGUN-A) U-A-C-GGAG |-UAUC-C-- 1201 AAG-CGUUAU CC-GGAAUCA -UU-GGGU|U UAAA-GGGU- CCG-UAG-GC -G|-GU-UU- 1261 A-GU-AAG|U CAG---UGGU G-AAA-GC-C CA-UCG-C(- UC-A)A-CGG -UG-G-AUC- 1321 -GGCC-AUUG A-UAC-UGCU G-AACUU-GA AUU-----AC U-GG-GAAGU AAC-U|AGAA 1381 UA-UGUAGU- GUA-GCG(-G UGAAA)-UGC -UU-AGAU-A UU-ACAUGG- AAUA-CCAA- 1441 -U-U-GC(-G AA-G)GCAG- -GUUACUA-- ---------- ---------- ---------C 1501 CAG--UU-UA UUGACG-CUG AU-G------ -------GA- C-GAAA-GC- GU-GGG-UA- 1561 UC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CNC- G-CC-GU--A 1621 AAC-G-AUGG A--UA-CU-- -------A|G -CU-GU-UGG -GC------- ---------- 1681 -(-GC-AA)- ---------- ---------- ---------- ---------G -UUCAG-UGG 1741 CU--AA---- --GC-(GAA- ---A)G-UG- AUAA-GUAUC C|C|A-CCU- G-GGGAGUAC 1801 GAA-C---(G CAA)---G-U UU-GAAACUC -AAA-GGAAU UG-ACGGG-N -N-C-CC--G 1861 C-N--CA-AU CGGUGG-ANC A-U-GU-GGU -UUAAUU-CG -(AUGAUA-C G)--CGAGGA 1921 A-CCUUA-CC AAG-GC-UUA AAU-GC|--- -------A-G ---ACUG--- -AC----CGA 1981 -UUU-G--(- GAAA-)-CAG -A-UCUU--- ---------- ---UC----- --(GC----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------A A-)------- GA-------- ---------| CAG-UU-UAC |---A|A--G 2161 GU-GC-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GC-C(-GUG A)-GGUGU-N 2221 AU-G-(UUAA -GU)-CCUAU AA-------- CGAG-C--GC AACCC-CU-G |-UU--GUU- 2281 AG--UUGC-C AG-CGA---- ---------- ---------- ---G(---UN ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----UUG|G 2701 G-AA-CU-C- U-AAC-AA-G A-CU-G-CCA --GU(-G--C AA)-ACU-GU -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAC-G-GC-C CUUAC-G-CC -UU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-C-GG -UA--CAGAG AGC-A-G-C- CA-CUG-G(G 2881 -UGA)CCAG- ---------- GA-UCGAA-U CUAU--AAAG -CC-G-GUC- ACAGUUCGGA 2941 U-CGGAGUC- (UGCAAC-U- C)-GACUCCG -UGAAGC-UG -GAAU-CGC- -UAGUA-AUC 3001 GG-AUA-(UC -AGCCAU)-G AUC-CGGUG- AA........ .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS F.flevense 4376 bp RNA RNA 02-JUL-1998 DEFINITION Flavobacterium flevense. ACCESSION No information KEYWORDS No information. SOURCE Flavobacterium flevense. ORGANISM Flavobacterium flevense. REFERENCE 1 AUTHORS Gherna,R. and Woese,C.R. TITLE A partial phylogenetic analysis of the "Flavobacter-Bacteroides" phylum: basis for taxonomic restructuring JOURNAL Syst. Appl. Microbiol. 15, 513-521 (1992) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: M58767 Former RDP Sids: Cy.flevens ATCC 27944 (T) = DSM 1076 NB: former name Cytophaga flevensis BASE COUNT 391 a 309 c 413 g 313 t 2950 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~NUACGAUGA AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAU -NAAC-GC-- UAGC-GGC-A -GGC-UU--A ACAC-AUGCA A-GUC-GAGG 121 G--------- -----GUAU- ---------- ---------- ---------- ---------- 181 ---------- ---------- ----AGU-UC (--UU----- ---------- ---------- 241 --------CG -)GA-AUU-- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --AGAG---- ---|------ ACCG-GCGC- 361 -A-CG-GG-U GCGU---AAC -GC-GUAUG- CAA--UCU-A C-CUUU---U -GCAG-A-GG 421 -GAU-AG-CC C--------- ------AG-- A(-GAAA-)U -UUGG-A--U UAAUACC-UC 481 AU-AGU---- ---------- -------A-U MK-C--R-YW ---RYY-(-- --------GC 541 AU-------- -)-GRY---W RM-RW----K AU--UAAA-- ---GU----- ---------- 601 --(------- ---CACA--- ---)------ ---------| -----A--C- G--GCA---- 661 ----AAAG-- AUG---A-|G CAUGC----- -GU|----CC C--AUUA-G- CUA-G---UU 721 GG-UA-AG-( GU-AAC-GG) -C-UUACC-A A|-GGC-UN- CGA------- -----UG-GG 781 U-AG-G-GG| -U-CCU--(G -AGA)-GGGA ----GA-U-- CCC-C|C-AC -ACUGG-U-A 841 (CUGA-GA-C ACG)--GACC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 AGG-AAUAUU G-GUCAAU-- GG-GC-(GCA A)-GCC-UNA ACCA|-GCCA UGCC-GC-GU 961 G-C-AG-G-A U-GAC--G-G UC(C-UA-U- -G)GA-UUGU AAA--CUNC| NUUU-GU-AC 1021 --GA-GAA-- GA-AACA-CU --ACU-U--( -----CGUG- ---------) --AA-GU-AG 1081 ---------- -------C-U U-GA-CGGU- A-UCG-U-AA G-AA--UAAG ---------G 1141 -AUCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGNNN-A) U-A-C-GGAG |-NAUC-C-- 1201 NAG-CGUUAU CC-GGAAUCA -UU-GGGU|U UAAA-GGGU- CCG-UAG-GC -G|-GU-CU- 1261 U-AU-AAG|U CAG---UGGU G-AAA-UC-U CC-CCG-C(- UC-A)A-CGG -GG-N-AAC- 1321 -UGCC-AUUG A-UAC-UGUA G-GACUU-GA AUA-----AU U-AG-GAAGU AAC-U|AGAA 1381 UA-UGUAGU- GUA-GCG(-G UGAAA)-UGC -UU-AGAG-A UU-ACAUGG- AAUA-CCAA- 1441 -U-U-GC(-G AA-G)GCAG- -GUUACUA-- ---------- ---------- ---------C 1501 UAA--UU-CA UUGACG-CUG AU-G------ -------GA- C-NAAA-GC- GU-GGG-UA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGG A--UA-CU-- -------A|G -CU-GU-UGG -GG------- ---------- 1681 -(-GC-AA)- ---------- ---------- ---------- ---------C -UUCAG-UGG 1741 CU--AA---- --GC-(GAA- ---A)G-UG- AUAA-GUAUC C|C|A-CCU- G-GGGAGUAC 1801 GAA-C---(G CAA)---G-U UU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CN--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGNUA-C G)--CGAGGA 1921 A-CCUUA-CC AAG-GC-UNA AAU-GU|--- -------A-G ---AUUG--- -AC----CGU 1981 -UUU-G--(- GAAA-)-CAG -A-ACUU--- ---------- ---UC----- --(GC----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------A A-)------- GA-------- ---------| CAA-UU-UAC |---A|A--G 2161 GU-GC-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GC-C(-GUG A)-GGUGU-C 2221 AG-G-(UUAA -GU)-CCUAU AA-------- CGAG-C--GC AACCC-CU-G |-UU--GUU- 2281 AG--UUGC-C AU-CGA---- ---------- ---------- ---G(---UC ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----UCG|G 2701 G-AA-CU-C- U-AAC-GA-G A-CU-G-CCA --GU(-G--C AA)-ACU-GU -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAC-G-GC-C CUUAC-G-CC -UU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-C-GG -UA--CAGAG AGC-A-G-C- CA-CUG-G(G 2881 -UGA)CCAG- ---------- GA-GCGAA-U CUAC--AAAG -CC-G-GNC- ACAGUUCGGA 2941 U-CGGAGUC- (UGCAAC-U- C)-GACUCCG -UGAAGC-UG -GAAU-CGC- -UAGUA-AUC 3001 GG-AUA-(UC -AGCCAU)-G AUC-CGGUG- AAUAC-GUU- CCC-NGG-CN UUGUA----C 3061 ACACCGCNC- GUC-AAG--- --NCA-UGGA A--GC-UGG- GG-GU-GCCU -GAA-G-UCG 3121 G-U------- -GA-CC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGA------ G-CU-GC-CU A-GGGU-AAA ACU-GG-UA- ACN-AGGG-C 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS F.flevens2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Flavobacterium flevense. ACCESSION No information KEYWORDS No information. SOURCE Flavobacterium flevense. ORGANISM Flavobacterium flevense. REFERENCE 1 AUTHORS Nakagawa,Y. and Yamasato,K. TITLE Phylogenetic diversity of the genus Cytophaga revealed by 16S rRNA sequencing and menaquinone analysis JOURNAL J. Gen. Microbiol. 139, 1155-1161 (1993) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: D12662|g425721 Former RDP Sids: Cy.fleven2 NB: former name Cytophaga flevensis BASE COUNT 339 a 261 c 347 g 285 t 3144 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 ....G-GG-U GCGU---AAC -GC-GUAUG- CAA--UCU-A C-CUUU---U -GCNG-A-GG 421 -GAU-AG-CC C--------- ------AG-- A(-GAAA-)U -UUGG-A--U UAAUUCC-UN 481 AU-AGU---- ---------- -------A-U CN-C--G-UU ---GUU-(-- --------GC 541 AU-------- -)-GGN---N NA-GN----G AU--UAAA-- ---GU----- ---------- 601 --(------- ---CACA--- ---)------ ---------| -----A--C- G--GCA---- 661 ----AAAG-- AUG---A-|G CAUGC----- -NU|----CC C--AUUA-G- CUA-G---UU 721 GG-UA-AG-( GU-AAC-GG) -C-UUACC-A A|-GGC-UA- CGA------- -----UG-GG 781 U-AG-G-GG| -U-CCU--(G -AGA)-GGGA ----GA-U-- CCC-C|C-AC -ACUGG-U-A 841 (CUGA-GA-C ACG)--GACC -AGN-C-UCC -(UACG)--G GAG-GC-AG- C-N---NU-G 901 AGG-AAUAUU G-GUCAAU-- GG-GC-(GCA A)-GCC-UGA ACCA|-GCCA UGCC-GC-GU 961 G-C-AG-G-A U-GAC--G-G UC(C-UA-U- -G)GA-UUGU AAA--CUUC| UUUU-GU-AC 1021 --GA-GAA-- GA-AACA-CU --ACU-U--( -----CGUG- ---------) --AA-GU-AG 1081 ---------- -------C-U U-GA-CGGU- A-UCG-U-AA G-AA--UAAG ---------G 1141 -AUCGGCU-A ACUCC-GUG( CCA--GCANN NNCGGUN-A) U-A-C-GGAG |-NAUC-C-- 1201 AAG-CGUUAU CC-GGAAUCA -UU-GGGU|U UAAA-GGGU- CCG-UAG-GC -G|-GU-CU- 1261 U-AU-AAG|U CAG---UGGU G-AAA-UC-U CC-CCG-C(- UC-A)A-CGG -GG-N-AAC- 1321 -UGCC-AUUG A-UAC-UGUA G-GACUU-GA AUA-----AU U-AG-GAAGU AAC-U|AGAA 1381 UA-UGUAGU- GUA-GCG(-G UGAAA)-UGC -UU-AGAG-A UU-ACAUGG- AAUA-CCAA- 1441 -U-U-GC(-G AA-G)GCAG- -GUUACUA-- ---------- ---------- ---------C 1501 UAA--UU-CA UUGACG-CUG AU-G------ -------GA- C-GAAA-GC- GU-GGG-UA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGG A--UA-CU-- -------A|G -CU-NU-UGG -GG------- ---------- 1681 -(-GC-AN)- ---------- ---------- ---------- ---------C -UUCAG-UGG 1741 CU--AA---- --GC-(GAA- ---A)G-UG- AUAA-GUAUC C|C|A-CCU- G-GGGAGUAC 1801 GAA-C---(G CAA)---G-U UU-GAAACUC -AAA-GGAAU UG-ACGGG-N -N-C-CC--G 1861 C-U--CA-AU CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGAUA-C G)--CGAGGA 1921 A-CCUUA-CC AAG-GC-UUA AAU-GU|--- -------A-G ---AUUN--- -AC----CGU 1981 -UUU-G--(- GAAA-)-CAG -A-ACUU--- ---------- ---UC----- --(GC----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------A A-)------- GA-------- ---------| CAA-UU-UAC |---A|A--G 2161 GU-GC-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GC-C(-GUG A)-GGUGN-C 2221 AG-G-(UUAA -GU)-CCUAU AA-------- CGAG-C--GC AACCC-CU-G |-UU--GUU- 2281 AG--UUGC-C AU-CGA---- ---------- ---------- ---G(---UC ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----UCG|G 2701 G-AA-CU-C- U-AAC-GA-G A-CU-G-CCA --GU(-G--C AA)-ACU-GU -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAC-G-GC-C CUUAC-G-CC -UU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-C-GG -UA--CAGAG AGC-A-G-C- CA-CUG-G(G 2881 -UGA)CCAG- ---------- GA-UCGAA-U CUAC--AAAG -CC-G-GUC- ACAGUUCGGA 2941 U-CGGAGUC- (UGCAAC-U- C)-GACUCCG -UGAAGC-UG -GAAU-CGC- -UAGUA-AUC 3001 GG-AUA-(UC -AGCCAU)-G AUC-CGGUG- AA........ .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Cy.spL431N 4376 bp RNA RNA 02-JUL-1998 DEFINITION Cytophaga sp. str. L-43-1-N. ACCESSION No information KEYWORDS No information. SOURCE Cytophaga sp. str. L-43-1-N. ORGANISM Cytophaga sp. REFERENCE 1 AUTHORS Nakagawa,Y. and Yamasato,K. TITLE Phylogenetic diversity of the genus Cytophaga revealed by 16S rRNA sequencing and menaquinone analysis JOURNAL J. Gen. Microbiol. 139, 1155-1161 (1993) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: D12675|g425733 isolate_name= L-43-1-N BASE COUNT 344 a 261 c 345 g 285 t 3141 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 ....G-GG-U GCGU---AAC -GC-GUAUG- CAA--UCU-A C-CUUU---C -ACAG-A-GG 421 -GAU-AG-CC C--------- ------AG-- A(-GAAA-)U -UUGG-A--U UAAUACC-UC 481 AU-AGU---- ---------- -------A-U UA-U--U-GA ---GUG-(-- --------GC 541 AU-------- -)-CAC---U UA-AU----A AU--UAAA-- ---GU----- ---------- 601 --(------- ---CACA--- ---)------ ---------| -----A--C- G--GUG---- 661 ----AAAG-- AUG---A-|G CAUGC----- -GU|----CC C--AUUA-G- CUA-G---UU 721 GG-UA-AG-( GU-AAC-GG) -C-UUACC-A A|-GGC-AN- CGA------- -----UG-GG 781 U-AG-G-GG| -U-CCU--(G -AGA)-GGGA ----GA-U-- CCC-C|C-AC -ACUGG-U-A 841 (CUGA-GA-A ACG)--GACC -AGU-C-UCC -(UACG)--G GAG-GC-AG- C-N---NU-G 901 AGG-AAUAUU G-GACAAU-- GG-GC-(GCA A)-GCC-UGA UCCA|-GCCA UGCC-GC-GU 961 G-C-AG-G-A U-GAC--G-G UC(C-UA-U- -G)GA-UUGU AAA--CUNC| UUUU-GU-AC 1021 --GA-GAA-- GA-AACA-CU --GCU-U--( -----CGUG- ---------) --AA-GC-AG 1081 ---------- -------C-U U-GA-CGGU- A-UCG-U-AA G-AA--UAAG ---------G 1141 -AUCGGCU-A ACUCC-GUG( CCA--GCANN NNCGGUN-A) U-A-C-GGAG |-UAUC-C-- 1201 AAG-CGUUAU CC-GGAAUCA -UU-GGGU|U UAAA-GGGU- CCG-UAG-GC -G|-GU-UU- 1261 A-GU-AAG|U CAG---UGGU G-AAA-GC-C CA-UCG-C(- UC-A)A-CGG -UG-G-AAC- 1321 -GGCC-AUUG A-UAC-UGCU N-AACUU-GA AUU-----AU U-AG-GAAGU AAC-U|AGAA 1381 UA-UGUAGU- GUA-GCG(-G UGAAA)-UGC -UU-AGAG-A UU-ACAUGG- AAUA-CCAA- 1441 -U-U-GC(-G AA-G)GCAG- -GUUACUA-- ---------- ---------- ---------C 1501 UAA--UU-GA UUGACG-CUG AU-G------ -------GA- C-GAAA-GC- GU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CNC- G-CC-GU--A 1621 AAC-G-AUGG A--UA-CU-- -------A|G -CU-GU-UGG -GA------- ---------- 1681 -(-UC-AA)- ---------- ---------- ---------- ---------U -CUCAG-UGG 1741 CU--AA---- --GC-(GAA- ---A)G-UG- AUAA-GUAUC C|C|A-CCU- G-GGGAGUAC 1801 GUU-C---(U CAA)---G-A AU-GAAACUC -AAA-GGAAU UG-CCGGG-N -N-C-CC--G 1861 C-A--CA-AU CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGAUA-C G)--CGAGGA 1921 A-CCUUA-CC AAG-GC-UUA AAU-GU|--- -------A-G ---AUUG--- -AC----CGG 1981 -UUU-G--(- GAAA-)-CAG -A-UCUU--- ---------- ---UC----- --(GC----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------A A-)------- GA-------- ---------| CAA-UU-UAC |---A|A--G 2161 GU-GC-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GC-C(-GUG A)-GGUGN-C 2221 AG-G-(UUAA -GU)-CCUAU AA-------- CGAG-C--GC ANCCC-CU-G |-UU--GUU- 2281 AG--UUGC-C AG-CGA---- ---------- ---------- ---G(---UC ---AAG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----UCG|G 2701 G-AU-CU-C- U-AAC-AA-G A-CU-G-CCA --GU(-G--C AA)-ACU-GU -GAGG-A-AG 2761 G-UG-GGG-N UG-ACG--UC -A-AAUC-AU CAC-G-GC-C CUUAC-G-CC -UU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-C-GG -UA--CAGAG AGC-A-G-C- CA-CUG-G(G 2881 -CNA)CCAG- ---------- GA-UCGAA-U CUAU--AAAA -CC-N-NUC- ACAGUUCGGA 2941 U-CGGAGUC- (UGCNNC-U- C)-GACUCCG -UGAAGC-UG -GAAU-CGC- -UAGUA-AUC 3001 GG-AUA-(UC -AGCCAU)-G AUC-CGGUG- AA........ .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS F.pectinov 4376 bp RNA RNA 02-JUL-1998 DEFINITION Flavobacterium pectinovorum str. Dorey 81 NCIMB 9059. ACCESSION No information KEYWORDS No information. SOURCE Flavobacterium pectinovorum str. Dorey 81 NCIMB 9059. ORGANISM Flavobacterium pectinovorum. REFERENCE 1 AUTHORS Nakagawa,Y. and Yamasato,K. TITLE Phylogenetic diversity of the genus Cytophaga revealed by 16S rRNA sequencing and menaquinone analysis JOURNAL J. Gen. Microbiol. 139, 1155-1161 (1993) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: D12669|g425728 Former RDP Sids: Cy.pectino NCIMB 9059 = DSM 6368 (T) = ATCC 19366 isolate_name= Dorey 81 NB: former name Cytophaga pectinovora BASE COUNT 347 a 254 c 347 g 283 t 3145 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 ....G-GG-U GCGU---AAC -GC-GUAUG- CAA--UCU-A C-CUUU---U -ACAG-A-GG 421 -GAU-AG-CC C--------- ------AG-- A(-GAAA-)U -UUGG-A--U UAAUACC-UC 481 AU-AGU---- ---------- -------C-A UA-A--G-NN ---NNC-(-- --------GC 541 AU-------- -)-GAA---U CN-GC----U AU--UAAA-- ---GU----- ---------- 601 --(------- ---CACA--- ---)------ ---------| -----A--C- G--GUA---- 661 ----AAAG-- AUG---A-|G CAUGC----- -GN|----CC C--AUUA-G- CUA-G---UU 721 GG-UA-AG-( GU-AAC-GG) -C-UUACC-A A|-GGC-UA- CGA------- -----AG-GG 781 U-AG-G-GG| -N-NCU--(G -AGA)-GGGA ----GA-U-- CCC-C|C-AC -ACUGG-U-A 841 (CUGA-GA-A ACG)--GAUC -AGN-C-UCC -(UNCG)--G GAG-GU-AG- C-A---GU-G 901 AGG-AAUAUU G-GAAAAU-- GG-GC-(GCA A)-GCU-UGA UCCA|-GCCA UGCC-GC-GU 961 G-N-AG-G-A U-GAC--G-G UC(C-UA-U- -G)GA-UUGU AAA--CUNC| UUUU-AU-AC 1021 --GA-GAA-- GA-AACN-CU --CCU-U--( -----CGUG- ---------) --AA-GG-AG 1081 ---------- -------C-U U-GA-CGGU- A-UCG-U-AA G-AA--UAAG ---------G 1141 -AUCGGCU-A ACUCC-GUG( CCA--GCANC NNCGGUN-A) U-A-C-GGAG |-GAUC-C-- 1201 AAG-CGUUAU CC-GGAAUCA -UU-GGGU|U UAAA-GGGU- CCG-UAG-GC -G|-GU-UU- 1261 G-GU-AAG|U CAG---UGGU G-AAA-GC-C CA-UCG-C(- UC-A)A-CGG -UG-G-AAC- 1321 -GGCC-AUUG A-UAC-UGCC N-GACUU-GA AUU-----AU U-AG-GAAGU AAC-U|AGAA 1381 UA-UGUAGU- GUA-GCG(-G UGAAA)-UGC -UU-AGAG-A UU-ACAUGG- AAUA-CCAA- 1441 -U-U-GC(-G AA-G)GCAG- -GUUACUA-- ---------- ---------- ---------C 1501 UAA--UU-GA UUGACG-CUG AU-G------ -------GA- C-GAAA-GC- GU-GGG-UA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGG A--UA-CU-- -------A|G -CU-GU-UGG -GA------- ---------- 1681 -(-UC-NN)- ---------- ---------- ---------- ---------U -CUCAG-UGG 1741 CU--AA---- --GC-(GAA- ---A)G-UG- AUAA-GUAUC C|C|A-CCU- G-GGGAGUAC 1801 GUU-C---(G CAA)---G-A AU-GAAACUC -AAA-GGAAU UG-ACGGG-N -N-C-NC--G 1861 C-A--CA-AU CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGAUA-C G)--CGAGGA 1921 A-CCUUA-CC AAG-GC-UUA AAU-GU|--- -------A-G ---AUUG--- -AC----CGG 1981 -UUU-G--(- GAAA-)-CAG -A-UCUU--- ---------- ---UC----- --(GC----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------A A-)------- GA-------- ---------| CAA-UU-UAC |---A|A--G 2161 GU-GC-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GC-C(-GUG A)-GGUGU-U 2221 AU-G-(UUAA -GU)-CCUAU AA-------- CGAG-C--GC AACCC-CU-G |-UU--GUU- 2281 AG--UUGC-C AG-CGA---- ---------- ---------- ---G(---UU ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----UCG|G 2701 G-AA-CU-C- U-AAC-AA-G A-CU-G-CCA --GU(-G--C AA)-ACU-GU -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAC-G-GC-C CUUAC-G-CC -UU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-C-GG -UA--CAGAG AGC-A-G-C- CA-CUG-G(G 2881 -CGA)CCAG- ---------- GA-UCGAA-U CUAU--AAAA -CC-N-NUC- ACAGUUCGGA 2941 U-CGGAGUC- (UGCAAC-U- C)-GACUCCG -UGAAGC-UG -GAAU-CGC- -UAGUA-AUC 3001 GG-AUA-(UC -AGCCAU)-G AUC-CGGUG- AA........ .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS F.sacchar2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Flavobacterium saccharophilum str. VL31 NCIMB 2072. ACCESSION No information KEYWORDS No information. SOURCE Flavobacterium saccharophilum str. VL31 NCIMB 2072. ORGANISM Flavobacterium saccharophilum. REFERENCE 1 AUTHORS Nakagawa,Y. and Yamasato,K. TITLE Phylogenetic diversity of the genus Cytophaga revealed by 16S rRNA sequencing and menaquinone analysis JOURNAL J. Gen. Microbiol. 139, 1155-1161 (1993) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: D12671|g425730 Former RDP Sids: Cy.saccha2 NCIMB 2072 = DSM 1811 (T) = ATCC 49530 (T) isolate_name= VL31 NB: former name Cytophaga saccharophila BASE COUNT 355 a 258 c 342 g 288 t 3133 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 ....G-GG-U GCGU---AAC -NC-GUAUG- CAA--UCU-A C-CUUU---U -ACAG-A-GG 421 -GAU-AG-CC C--------- ------AG-- A(-GAAA-)U -UUGG-A--U UAAUACC-UC 481 AU-AGU---- ---------- -------A-U UA-C--G-AA ---AUG-(-- --------GC 541 AU-------- -)-CAU---U UU-GU----A AU--UAAA-- ---GU----- ---------- 601 --(------- ---CACA--- ---)------ ---------| -----A--C- G--GUA---- 661 ----AAAG-- AUG---A-|G CAUGC----- -GU|----CC C--AUUA-G- CUA-G---UU 721 GG-UA-AG-( GU-AAC-GG) -C-UUACC-A A|-GGC-UU- CGA------- -----UG-GG 781 U-AG-G-GG| -N-CCU--(G -AGA)-GGGA ----GA-U-- CCC-C|C-AC -ACUGG-U-A 841 (CUGA-GA-C ACG)--GACC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---NU-G 901 AGG-AAUAUU G-GACAAU-- GG-GC-(GCA A)-GCC-UGA UCCA|-GCCA UGCC-GC-GU 961 G-C-AG-G-A U-GAC--G-G UC(C-UA-U- -G)GA-UUGU AAA--CUNC| UUUU-AU-AC 1021 --GA-GAA-- GA-AACA-CU --CCU-U--( -----CGUG- ---------) --AA-GG-AG 1081 ---------- -------C-U U-GA-CGGU- A-UCG-U-AA G-AA--UAAG ---------G 1141 -AUCGGCU-A ACUCC-GUG( CCA--GCANC NNCNGUN-A) U-A-C-GGAG |-UAUC-C-- 1201 AAG-CGUUAU CC-GGAAUCA -UU-GGGU|U UAAA-GGGU- CCG-UAG-GC -G|-GU-UU- 1261 A-AU-AAG|U CAG---UGGU G-AAA-GC-C CA-UCG-C(- UC-A)A-CGG -UG-G-AAC- 1321 -GGCC-AUUG A-UAC-UGUU A-AACUU-GA AUU-----AU U-AG-GAAGU AAC-U|AGAA 1381 UA-UGUAGU- GUA-GCG(-G UGAAA)-UGC -UU-AGAG-A UU-ACAUGG- AAUA-CCAA- 1441 -U-U-GC(-G AA-G)GCAG- -GUUACUA-- ---------- ---------- ---------C 1501 UAA--UG-GA UUGACG-CUG AU-G------ -------GA- C-GAAA-GC- GU-GGG-UA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGG A--UA-CU-- -------A|G -CU-GU-UGG -AA------- ---------- 1681 -(-GC-AA)- ---------- ---------- ---------- ---------U -UUCAG-UGG 1741 CU--AA---- --GC-(GAA- ---A)G-UG- AUAA-GUAUC C|C|N-CCU- G-GGGAGUAC 1801 GUU-C---(G CAA)---G-A AU-GAAACUC -AAA-GGAAU UG-ACGGG-N -N-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGAUA-C G)--CGAGGA 1921 A-CCUUA-CC AAG-GC-UUA AAU-GU|--- -------A-G ---AUUG--- -AC----CGU 1981 -UUU-G--(- GAAA-)-CAG -A-ACUU--- ---------- ---UC----- --(GC----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------A A-)------- GA-------- ---------| CAA-UU-UAC |---A|A--G 2161 GU-GC-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GC-C(-GUG A)-GGUGU-U 2221 AN-G-(UUAA -GU)-CCUAU AA-------- CGAG-C--GC AACCC-CU-G |-UU--GUU- 2281 AG--UUGC-C AG-CGA---- ---------- ---------- ---G(---UC ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----UCG|G 2701 G-AA-CU-C- U-AAC-AA-G A-CU-G-CCA --GU(-G--C AA)-ACU-GU -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAC-G-GC-C CUUAC-G-CC -UU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-C-GG -UA--CAGAG AGC-A-G-C- CA-CUG-G(U 2881 -CGA)CCAG- ---------- GA-UCGAA-U CUAU--AAAA -CC-G-GUC- ACAGUUCGGA 2941 U-CGGAGUC- (UGCAAC-U- C)-GACUCCG -UGAAGC-UG -GAAU-CGC- -UAGUA-AUC 3001 GG-AUA-(UC -AGCCAU)-G AUC-CGGUG- AA........ .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS F.saccharo 4376 bp RNA RNA 02-JUL-1998 DEFINITION Flavobacterium saccharophilum str. VL31 NCIMB 2072. ACCESSION No information KEYWORDS No information. SOURCE Flavobacterium saccharophilum str. VL31 NCIMB 2072. ORGANISM Flavobacterium saccharophilum. REFERENCE 1 AUTHORS Woese,C.R. JOURNAL Unpublished (1992) STANDARD No information COMMENTS Former RDP Sids: Cy.sacchar NCIMB 2072 = DSM 1811 (T) = ATCC 49530 (T) isolate_name= VL31 NB: former name Cytophaga saccharophila BASE COUNT 404 a 308 c 415 g 321 t 2928 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~NUACGAUGA AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAU -GAAC-GC-- UAGC-GGC-A -GGC-UU--A ACAC-AUGCA A-GUC-GAGG 121 G--------- -----GUAU- ---------- ---------- ---------- ---------- 181 ---------- ---------- ----GGU-UC (--UU----- ---------- ---------- 241 --------CG -)GA-ACC-- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --AGAG---- ---|------ ACCG-GCGC- 361 -A-CG-GG-U GCGU---AAC -GC-GUAUG- CAA--UCU-A C-CUUU---U -ACAG-A-GG 421 -GAU-AG-CC C--------- ------AG-- A(-GAAA-)U -UUGG-A--U UAAUACC-UC 481 AU-AGU---- ---------- -------A-U UA-C--G-AA ---AUG-(-- --------GC 541 AU-------- -)-CAU---U UU-GU----A AU--UAAA-- ---GU----- ---------- 601 --(------- ---CACA--- ---)------ ---------| -----A--C- G--GUA---- 661 ----AAAG-- AUG---A-|G CAUGC----- -GU|----CC C--AUUA-G- CUA-G---UU 721 GG-UA-AG-( GU-AAC-GG) -C-UUACC-A A|-GGC-UN- CGA------- -----UG-GG 781 N-AG-G-GG| -U-CCU--(G -AGA)-GGGA ----GA-U-- CCC-C|C-AC -ACUGG-U-A 841 (CUGA-GA-C ACG)--GACC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 AGG-AAUAUU G-GACAAU-- GG-GC-(GCA A)-GCC-UNA UCCA|-GCCA UGCC-GN-GU 961 G-C-AG-G-A U-GAC--G-G UC(C-UA-U- -G)GA-UUGU AAA--CUNC| UUUU-AU-AC 1021 --GA-GAA-- GA-AACA-CU --CCU-U--( -----CGUG- ---------) --AA-GG-AG 1081 ---------- -------C-U U-GA-CGGU- A-UCG-U-AA G-AA--UAAG ---------G 1141 -AUCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUN-A) U-A-C-GGAG |-NAUC-C-- 1201 AAG-CGUUAU CC-GGAAUCA -UU-GGGU|U UAAA-GGGU- CCG-UAG-GC -G|-GU-UU- 1261 A-AU-AAG|U CAG---UGGU G-AAA-GC-C CA-UCG-C(- UC-A)A-CGG -UG-G-AAC- 1321 -GGCC-AUUG A-UAC-UGUU A-AACUU-GA AUU-----AU U-AG-GAAGU AAC-U|AGAA 1381 UA-UGUAGU- GUA-GCG(-G UGAAA)-UGC -UU-AGAG-A UU-ACAUGG- AAUA-CCAA- 1441 -U-U-GC(-G AA-G)GCAG- -GUUACUA-- ---------- ---------- ---------C 1501 UAA--UG-GA UUGACG-CUG AU-G------ -------GA- C-NAAA-GC- GU-GGG-UA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGG A--UA-CU-- -------A|G -CU-GU-UGG -AA------- ---------- 1681 -(-GC-AA)- ---------- ---------- ---------- ---------U -UUCAG-UGG 1741 CU--AA---- --GC-(GAA- ---A)G-UG- AUAA-GUAUC C|C|A-CCU- G-GGGAGUAC 1801 GUU-C---(G CAA)---G-A AU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGNUA-C G)--CGAGGA 1921 A-CCUUA-CC AAG-GC-UUA AAU-GU|--- -------A-G ---AUUG--- -AC----CGU 1981 -UUU-G--(- GAAA-)-CAG -A-ACUU--- ---------- ---UC----- --(GC----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------A A-)------- GA-------- ---------| CAA-UU-UAC |---A|A--G 2161 GU-GC-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GC-C(-GUG A)-GGUGU-C 2221 AG-G-(UUAA -GU)-CCUAU AA-------- CGAG-C--GC AACCC-CU-G |-UU--GUU- 2281 AG--UUGC-C AG-CGA---- ---------- ---------- ---G(---UC ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----UCG|G 2701 G-AA-CU-C- U-AAC-AA-G A-CU-G-CCA --GU(-G--C AA)-ACU-GU -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAC-G-GC-C CUUAC-G-CC -UU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-C-GG -UA--CAGAG AGC-A-G-C- CA-CUG-G(G 2881 -CGA)CCAG- ---------- GA-GCGAA-U CUAU--AAAA -CC-G-GNC- ACAGUUCGGA 2941 U-CGGAGUC- (UGCAAC-U- C)-GACUCCG -UGAAGC-UG -GAAU-CGC- -UAGUA-AUC 3001 GG-AUA-(UC -AGCCAU)-G AUC-CGGUG- AAUAC-GUU- CCC-GGG-CN UUGUA----C 3061 ACACCGCCC- GUC-AAN--- --NCA-UGGA A--GC-UGG- GG-GU-GCCU -GAA-G-UCG 3121 G-U------- -GA-CC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGA------ G-CU-GC-CU A-GGGU-AAA ACU-GG-UA- ACU-AGG... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS F.columna2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Flavobacterium columnare str. RR-1a ATCC 43622. ACCESSION No information KEYWORDS No information. SOURCE Flavobacterium columnare str. RR-1a ATCC 43622. ORGANISM Flavobacterium columnare. REFERENCE 1 AUTHORS Gherna,R. and Woese,C.R. TITLE A partial phylogenetic analysis of the "Flavobacter-Bacteroides" phylum: basis for taxonomic restructuring JOURNAL Syst. Appl. Microbiol. 15, 513-521 (1992) STANDARD No information COMMENTS Organism information Culture collection: ATCC 43622 Sequence information (bases 1 to 4376) Corresponding GenBank entry: M58781 Former RDP Sids: Flx.column isolate_name= RR-1a NB: former name Flexibacter columnaris BASE COUNT 402 a 314 c 419 g 318 t 2923 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~NUACGAUGA AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAU -NAAC-GC-- UAGC-GGC-A -GGC-UU--A ACAC-AUGCA A-GUC-GAGG 121 G--------- -----GUAU- ---------- ---------- ---------- ---------- 181 ---------- ---------- ----GCU-UC (--UU----- ---------- ---------- 241 --------CG -)GA-AGC-- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --AGAG---- ---|------ ACCG-GCGC- 361 -A-CG-GG-U GCGU---AAC -GC-GUAUG- CAA--UCU-A C-CUUU---U -ACAG-A-GG 421 -GAU-AG-CC C--------- ------AG-- A(-GAAA-)U -UUGG-A--U UAAUACC-UC 481 AU-AGU---- ---------- -------A-U AG-C--U-GA ---AUC-(-- --------GC 541 AU-------- -)-GAU---U CU-AC----U AU--UAAA-- ---GU----- ---------- 601 --(------- ---CACA--- ---)------ ---------| -----A--C- G--GUA---- 661 ----AAAG-- AUG---A-|G CAUGC----- -GU|----CC C--AUUA-G- CUA-G---UU 721 GG-UA-AG-( GU-AAC-GG) -C-UUACC-A A|-GGC-UN- CGA------- -----UG-GG 781 U-AG-G-GG| -U-CCU--(G -AGA)-GGGA ----GA-U-- CCC-C|C-AC -ACUGG-U-A 841 (CUGA-GA-C ACG)--GACC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 AGG-AAUAUU G-GACAAU-- GG-GC-(GCA A)-GCC-NNA UCCA|-GCCA UGCC-GC-GU 961 G-C-AG-G-A U-GAC--G-G UC(C-UA-U- -G)GA-UUGU AAA--CUNC| UUUU-AU-AC 1021 --GA-GAA-- GA-AACA-CU --GCU-U--( -----CGUG- ---------) --AA-GC-AG 1081 ---------- -------C-U U-GA-CGGU- A-UCG-U-AA G-AA--UAAG ---------G 1141 -AUCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGNN-A) U-A-C-GGAG |-NAUC-C-- 1201 AAG-CGUUAU CC-GGAAUCA -UU-GGGU|U UAAA-GGGU- CCG-UAG-GC -G|-GU-UU- 1261 A-AU-AAG|U CAG---UGGU G-AAA-GC-C CA-UCG-C(- NC-A)A-CGG -UG-G-AAC- 1321 -GGCC-AUUG A-UAC-UGUU A-AACUU-GA AUU-----AU U-AG-GAAGU AAC-U|AGAA 1381 UA-UGUAGU- GUA-GCG(-G UGAAA)-UGC -UU-AGAG-A UU-ACAUGG- AAUA-CCAA- 1441 -U-U-GC(-G AA-G)GCAG- -GUUACUA-- ---------- ---------- ---------C 1501 UAA--UG-GA UUGACG-CUG AU-G------ -------GA- C-GAAA-GC- GU-GGG-UA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGG A--UA-CU-- -------A|G -CU-GU-UGG -GA------- ---------- 1681 -(-GC-AA)- ---------- ---------- ---------- ---------U -CUCAG-UGG 1741 CU--AA---- --GC-(GAA- ---A)G-UG- AUAA-GUAUC C|C|A-CCU- G-GGGAGUAC 1801 GUU-C---(G CAA)---G-A AU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CN--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGAUA-C G)--CGAGGA 1921 A-CCUUA-CC AAG-GC-UUA AAU-GU|--- -------A-G ---AUUG--- -AC----CGG 1981 -UUU-G--(- GAAA-)-CAG -A-UCUU--- ---------- ---UC----- --(GC----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------A A-)------- GA-------- ---------| CAA-UU-UAC |---A|A--G 2161 GU-GC-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GC-C(-GUG A)-GGUGU-C 2221 AG-G-(UUAA -GU)-CCUAU AA-------- CGAG-C--GC AACCC-CU-G |-UU--GUU- 2281 AG--UUGC-C AG-CGA---- ---------- ---------- ---G(---UC ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----UCG|G 2701 G-AA-CU-C- U-AAC-AA-G A-CU-G-CCA --GU(-G--C AA)-ACU-GU -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAC-G-GC-C CUUAC-G-CC -UU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-C-GG -UA--CAGAG AGC-A-G-C- CA-CUG-G(G 2881 -CGA)CCAG- ---------- GA-GCGAA-U CUAU--AAAA -CC-G-GUC- ACAGUUCGGA 2941 U-CGGAGUC- (UGCAAC-U- C)-GACUCCG -UGAAGC-UG -GAAU-CGC- -UAGUA-AUC 3001 GG-AUA-(UC -AGCCAU)-G AUC-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-AAG--- --CCA-UGGA A--GC-UGG- GG-GU-GCCU -GAA-G-UCG 3121 G-U------- -GA-CC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGA------ G-CU-GC-CU A-GGGU-AAA ACU-GG-UA- ACU-AGGG-C 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS F.johnson2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Flavobacterium johnsoniae. ACCESSION No information KEYWORDS No information. SOURCE Flavobacterium johnsoniae. ORGANISM Flavobacterium johnsoniae. REFERENCE 1 AUTHORS Gherna,R. and Woese,C.R. TITLE A partial phylogenetic analysis of the "Flavobacter-Bacteroides" phylum: basis for taxonomic restructuring JOURNAL Syst. Appl. Microbiol. 15, 513-521 (1992) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: M59053 Former RDP Sids: Cy.johns.d DSM 425 = NCIMB 10150 NB: former name Cytophaga johnsonae BASE COUNT 411 a 315 c 419 g 323 t 2908 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~NNACGAUGA AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAU -NAAC-GC-- UAGC-GGC-A -GGC-UU--A ACAC-AUGCA A-GUC-GAGG 121 G--------- -----GUAU- ---------- ---------- ---------- ---------- 181 ---------- ---------- ----ACU-UC (--UU----- ---------- ---------- 241 --------CG -)GA-AGU-- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --AGAG---- ---|------ ACCG-GCGC- 361 -A-CG-GG-U GCGU---AAC -GC-GUAUG- CAA--UCA-A C-CUUU---U -ACAG-A-GG 421 -GAU-AG-CC C--------- ------AG-- A(-GAAA-)U -UUGG-A--U UAAUACC-UC 481 AU-AGU---- ---------- -------A-U AU-A--G-AC ---UCG-(-- --------GC 541 AU-------- -)-CGA---G AU-UA----U AU--UAAA-- ---GU----- ---------- 601 --(------- ---CACA--- ---)------ ---------| -----A--C- G--GUA---- 661 ----AAAG-- AUG---A-|G CAUGC----- -GU|----CC C--AUUA-G- CUA-G---UU 721 GG-UA-AG-( GU-AAC-GG) -C-UUACC-A A|-GGC-NN- CGA------- -----UG-GG 781 N-AG-G-GG| -U-CCU--(G -AGA)-GGGA ----GA-U-- CCC-C|C-AC -ACUGG-U-A 841 (CUGA-GA-C ACG)--GACC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 AGG-AAUAUU G-GACAAU-- GG-GC-(GCA A)-GCC-NGA UCCA|-GCCA UGCC-GC-GU 961 G-C-AG-G-A U-GAC--G-G UC(C-UA-U- -G)GA-UUGU AAA--CUGC| UUUU-AU-AC 1021 --GA-GAA-- GA-AACA-CU --GCU-A--( -----CGUG- ---------) --UA-GC-AG 1081 ---------- -------C-U U-GA-CGGU- A-UCG-U-AA G-AA--UAAG ---------G 1141 -AUCGGCU-A ACUCC-GUG( CCA--GCAGC CNCGGUA-A) U-A-C-GGAG |-GAUC-C-- 1201 AAG-CGUUAU CC-GGAAUCA -UU-GGGU|U UAAA-GGGU- CCG-UAG-GC -G|-GU-UU- 1261 A-AU-AAG|U CAG---UGGU G-AAA-GC-C CA-UCG-C(- UC-A)A-CGG -UG-G-AAC- 1321 -GGCC-AUUG A-UAC-UGUU A-GACUU-GA AUU-----AU U-AG-GAAGU AAC-U|AGAA 1381 UA-UGUAGU- GUA-GCG(-G UGAAA)-UGC -UU-AGAG-A UU-ACAUGG- AAUA-CCAA- 1441 -U-U-GC(-G AA-G)GCAG- -GUUACUA-- ---------- ---------- ---------C 1501 UAA--UU-GA UUGACG-CUG AU-G------ -------GA- C-NAAA-GC- GU-GGG-UA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGG A--UA-CU-- -------A|G -CU-GU-UGG -AA------- ---------- 1681 -(-GC-AA)- ---------- ---------- ---------- ---------U -UUCAG-UGG 1741 CU--NA---- --GC-(GAA- ---A)G-UG- AUAA-GUAUC C|C|A-CCU- G-GGGAGUAC 1801 GUU-C---(G CAA)---G-A AU-GAAACUC -AAA-GGAAU UG-ACNGG-N -G-C-CN--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUNNUA-C G)--CGAGGA 1921 A-CCUUA-CC AAG-GC-UUA AAU-GU|--- -------A-G ---AUUG--- -AC----CGG 1981 -UUU-G--(- GAAA-)-CAG -A-UCUU--- ---------- ---UC----- --(GC----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------A A-)------- GA-------- ---------| CAA-UU-UAC |---A|A--G 2161 GU-GC-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GC-C(-GUG A)-GGUGU-C 2221 AG-G-(UUAA -GU)-CCUAU AA-------- CGAG-C--GC AACCC-CU-G |-UU--GUU- 2281 AG--UUGC-C AG-CGA---- ---------- ---------- ---G(---UC ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----UCG|G 2701 G-AA-CU-C- U-AAC-AA-G A-CU-G-CCA --GU(-G--C AA)-ACU-GU -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAC-G-GC-C CUUAC-G-CC -UU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-C-GG -UA--CAGAG AGC-A-G-C- CA-CUG-G(G 2881 -CGA)CCAG- ---------- GA-GCGAA-U CUAU--AAAA -CC-G-GNC- ACAGUUCGGA 2941 U-CGGAGUC- (UGCAAC-U- C)-GACUCCG -UGAAGC-UG -GAAU-CGC- -UAGUA-AUC 3001 GG-AUA-(UC -AGCCAU)-G AUC-CGGUG- AAUAC-GUU- CCC-GGG-CN UUGUA----C 3061 ACACCGCNC- GUC-AAG--- --NCA-UGGA A--GC-UGG- GG-GU-GCCU -GAA-G-UCG 3121 G-U------- -GA-CC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGA------ G-CU-GC-CU A-GGGU-AAA ACU-GG-UA- ACU-AGGG-C 3301 .......... GUAA-CAAG. .......... .(.....).. .......... GAACACCUCC 3361 UUUC|U~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Spc.caulif 4376 bp RNA RNA 02-JUL-1998 DEFINITION Sporocytophaga cauliformis. ACCESSION No information KEYWORDS No information. SOURCE Sporocytophaga cauliformis. ORGANISM Sporocytophaga cauliformis. REFERENCE 1 AUTHORS Gherna,R. and Woese,C.R. TITLE A partial phylogenetic analysis of the "Flavobacter-Bacteroides" phylum: basis for taxonomic restructuring JOURNAL Syst. Appl. Microbiol. 15, 513-521 (1992) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: M93151 BASE COUNT 401 a 306 c 412 g 316 t 2941 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~NUACGAUGA AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAU -NAAC-GC-- UAGC-GGC-A -GGC-UU--A ACAC-AUGCA A-GUC-GAGG 121 G--------- -----GUAU- ---------- ---------- ---------- ---------- 181 ---------- ---------- ----AUG-UC (--UU----- ---------- ---------- 241 --------CG -)GA-UAU-- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --AGAG---- ---|------ ACCG-GCGC- 361 -A-CG-GG-U GCGU---AAC -GC-GUAUG- CAA--UCU-A C-CUUU---U -ACAG-A-GG 421 -GAU-AG-CC C--------- ------AG-- A(-GAAA-)U -UUGG-A--U UAAUACC-UC 481 AU-AGU---- ---------- -------A-U AG-U--G-AC ---UCG-(-- --------GC 541 AU-------- -)-CGA---G AU-AC----U AU--UAAA-- ---GU----- ---------- 601 --(------- ---CACA--- ---)------ ---------| -----A--C- G--GUA---- 661 ----AAAG-- AUG---A-|G CAUGC----- -GU|----CC C--AUUA-G- CUA-G---UU 721 GG-UA-AG-( GU-AAC-GG) -C-UUACN-A A|-GGC-UN- CGA------- -----UG-GG 781 N-AG-G-GG| -U-CCU--(G -AGA)-GGGA ----GA-U-- CCC-C|C-AC -ACUGG-U-A 841 (CUGA-GA-C ACG)--GACC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 AGG-AAUAUU G-GACAAU-- GG-GC-(GCA A)-GCC-NNA UCCA|-GCCA UGCC-GC-GU 961 G-C-AG-G-A U-GAC--G-G UC(C-UA-U- -G)GA-UUGU AAA--CUGC| NUUU-GU-AC 1021 --GA-GAA-- GA-AACA-CU --CCA-A--( -----CGUG- ---------) --UU-GG-AG 1081 ---------- -------C-U U-GA-CGGU- A-UCG-U-AA G-AA--UAAG ---------G 1141 -AUCGGCU-A ACUCC-GUG( CCA--GCAGC CNCGNNN-A) U-A-C-GGAG |-NAUC-C-- 1201 NAG-CGUUAU CC-GGAAUCA -UU-GGGU|U UAAA-GGGU- CCG-UAG-GC -G|-GU-UU- 1261 A-GU-AAG|U CAG---UGGU G-AAA-GC-C CA-UCG-C(- UC-A)A-CGG -UG-G-AAC- 1321 -GGCC-AUUG A-UAC-UGCU N-AACUU-GA AUU-----AU U-AG-GAAGU AAC-U|AGAA 1381 UA-UGUAGU- GUA-GCG(-G UGAAA)-UGC -UU-AGAG-A UU-ACAUGG- AAUA-CCAA- 1441 -U-U-GC(-G AA-G)GCAG- -GUUACUA-- ---------- ---------- ---------C 1501 UAA--UG-GA UUGACG-CUG AU-G------ -------GA- C-NAAA-GC- GU-GGG-UA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGG A--UA-CU-- -------A|G -CU-GU-UGG -AA------- ---------- 1681 -(-GC-AA)- ---------- ---------- ---------- ---------U -UUCAG-UGG 1741 CU--AA---- --GC-(GAA- ---A)G-UG- AUAA-GUAUC C|C|A-CCU- G-GGGAGUAC 1801 GUU-C---(G CAA)---G-A AU-GAAACUC -AAA-GGAAU UG-ACGGG-N -G-C-CN--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUNNUA-C G)--CGAGGA 1921 A-CCUUA-CC AAG-GC-UUA AAU-GU|--- -------A-G ---UUUG--- -AC----CGA 1981 -UUU-G--(- GAAA-)-CAG -A-UCUU--- ---------- ---UC----- --(GC----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------A A-)------- GA-------- ---------| CAA-AU-UAC |---A|A--G 2161 GU-GC-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GC-C(-GUG A)-GGUGU-C 2221 AG-G-(UUAA -GU)-CCUAU AA-------- CGAG-C--GC AACCC-CU-G |-UU--GUU- 2281 AG--UUGC-C AG-CGA---- ---------- ---------- ---G(---UC ---AAG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----UCG|G 2701 G-AA-CU-C- U-AAC-AA-G A-CU-G-CCA --GU(-G--C AA)-ACU-GU -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAC-G-GC-C CUUAC-G-CC -UU--GGNC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-C-GG -UA--CAGAG AGC-A-G-C- CA-CUG-G(G 2881 -UGA)CCAG- ---------- GA-GCGAA-U CUAU--AAAA -CC-G-GNC- ACAGUUCGGA 2941 U-CGGAGUC- (UGCAAC-U- C)-GACUCCG -UGAAGC-UG -GAAU-CGC- -UAGUA-AUC 3001 GG-AUA-(UC -AGCCAU)-G AUC-CGGUG- AAUAC-GUU- CCC-NGG-CN UUGUA----C 3061 ACACCGCNC- GUC-AAN--- --NCA-UGGA A--GC-UGG- GG-GU-GCCU -GAA-G-UCG 3121 G-U------- -GA-CC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGA------ G-CU-GC-CU A-GGGU-AAA ACU-GG-UA- ACU-AGG... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS F.ameridie 4376 bp RNA RNA 02-JUL-1998 DEFINITION Flavobacterium ameridies. ACCESSION No information KEYWORDS No information. SOURCE Flavobacterium ameridies. ORGANISM Flavobacterium ameridies. REFERENCE 1 AUTHORS McCammon,S.A., Inness,B.H., Franzmann,P.D., Dobson,S.J., Holloway,P., Skerratt,J.H., Nichols,P.D., Mcmeekin,T.A. and Rankin,L.M. TITLE Flavobacterium ameridies sp. nov., a lactose utilising bacterium from a freshwater Antarctic lake JOURNAL Unpublished (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: L39067|g632914 BASE COUNT 409 a 316 c 418 g 316 t 2917 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......GAU -GAAC-GC-- UAGC-GGC-A -GGC-UU--A ACAC-AUGCA A-GUC-GAGG 121 G--------- -----GUAU- ---------- ---------- ---------- ---------- 181 ---------- ---------- ----UGG-UU (--UU----- ---------- ---------- 241 --------CG -)GA-CCA-- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --AGAG---- ---|------ ACCG-GCGC- 361 -A-CG-GG-U GCGU---AAC -GC-GUAUG- CAA--UCU-A C-CUUU---U -ACAG-A-GG 421 -GAU-AG-CC C--------- ------AG-- A(-GAAA-)U -UUGG-A--U UAAUACC-UC 481 AU-AGC---- ---------- -------A-U AG-C--A-GC ---UUC-(-- --------GC 541 AU-------- -)-GAA---G CC-AC----U AU--UAAA-- ---GU----- ---------- 601 --(------- ---CACA--- ---)------ ---------| -----A--C- G--GUA---- 661 ----AAAG-- AUG---A-|G CAUGC----- -GU|----CC C--AUUA-G- CUA-G---UU 721 GG-UA-AG-( GU-AAC-GG) -C-UUACC-A A|-GGC-UA- CGA------- -----UG-GG 781 U-AG-G-GG| -U-CCU--(G -AGA)-GGGA ----GA-U-- CCC-C|C-AC -ACUGG-U-A 841 (CUGA-GA-C ACG)--GACC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 AGG-AAUAUU G-GACAAU-- GG-GC-(GCA A)-GCC-UGA UCCA|-GCCA UGCC-GC-GU 961 G-C-AG-G-A U-GAC--G-G UC(C-UA-U- -G)GA-UUGU AAA--CUGC| UUUU-AU-AC 1021 --AG-GAA-- GA-AACA-GU --UCU-A--( -----CGUG- ---------) --UA-GA-AC 1081 ---------- -------C-U U-GA-C-GU- A-CUG-U-AA G-AA--UAAG ---------G 1141 -AUCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GAUC-C-- 1201 AAG-CGUUAU CC-GGAAUCA -UU-GGGU|U UAAA-GGGU- CCG-UAG-GC -G|-GU-UU- 1261 A-AU-AAG|U CAG---UGGU G-AAA-GC-C CA-UCG-C(- UC-A)A-CGG -UG-G-AAC- 1321 -NGCC-AUUG A-UAC-UGUU A-GACUU-GA AUU-----AU U-AG-GAAGU AAC-U|AGAA 1381 UA-UGUAGU- GUA-GCG(-G UGAAA)-UGC -UU-AGAG-A UU-ACAUGG- AAUA-CCAA- 1441 -U-U-GC(-G AA-G)GCAG- -GUUACUA-- ---------- ---------- ---------C 1501 UAA--UG-GA UUGACG-CUG AU-G------ -------GA- C-GAAA-GC- GU-GGG-UA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGG A--UA-CU-- -------A|G -CU-GU-UGG -AA------- ---------- 1681 -(-GC-AA)- ---------- ---------- ---------- ---------U -UUCAG-UGG 1741 CU--AA---- --GC-(GAA- ---A)G-UG- AUAA-GUAUC C|C|A-CCU- G-GGGAGUAC 1801 GUU-C---(G CAA)---G-A AU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGAUA-C G)--CGAGNA 1921 A-CCUUA-CC AAG-GC-UUA AAU-GU|--- -------A-G ---UUUG--- -AC----CGA 1981 -UUU-G--(- GAAA-)-CAG -A-UCUU--- ---------- ---UC----- --(GC----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------A A-)------- GA-------- ---------| CAA-AU-UAC |---A|A--G 2161 GU-GC-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CA-U |GC-C(-GUG A)-GGUGU-C 2221 AG-G-(UUAA -GU)-CCUAU AA-------- CGAG-C--GC AACCC-CU-G |-UU--GUU- 2281 AG--UUGC-C AG-CGA---- ---------- ---------- ---G(---UC ---AAG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----UCG|G 2701 G-AA-CU-C- U-AAC-AA-G A-CU-G-CCA --GU(-G--C AA)-ACU-GU -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAC-G-GC-C CUUAC-G-CC -UU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-C-GG -UA--CAGAG AGC-A-G-C- CA-CUG-G(G 2881 -CGA)CCAG- ---------- GA-GCGAA-U CUAU--AAAA -CC-G-GUC- ACAGUUCGGA 2941 U-CGGAGUC- (UGCAAC-U- C)-GACUCCG -UGAAGC-UG -GAAU-CGC- -UAGUA-AUC 3001 GG-AUA-(UC -AGCCAU)-G AUC-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-AAG--- --CCA-UGGA A--GC-UGG- GG-GU-GCCU -GAA-G-UCG 3121 G-U------- -GA-CC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGA------ G-CU-GC-CU A-GGGU-AAA ACU-GG-UA- ACU-AGGG-C 3301 U---AAGUC- GUAA-CAAGG UAGCC-GUAC C(GG...).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS F.branchio 4376 bp RNA RNA 02-JUL-1998 DEFINITION Flavobacterium branchiophilum str. 270 IFO 15030. ACCESSION No information KEYWORDS No information. SOURCE Flavobacterium branchiophilum str. 270 IFO 15030. ORGANISM Flavobacterium branchiophilum. REFERENCE 1 AUTHORS Nakagawa,Y. and Yamasato,K. TITLE Emendation of the genus Cytophaga and transfer of Cytophaga agarovorans and Cytophaga salmonicolor to Marinilabilia gen. nov: phylogenetic analysis of the Flavobacterium-Cytophaga complex JOURNAL Int. J. Syst. Bacteriol. 46, 599-603 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: D14017|g1711220 isolate_name= 270 NB: Added by Bergey's to RDP Release 6.0 tree BASE COUNT 350 a 255 c 346 g 296 t 3129 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... ........UA CUAGAG---- ---|------ ACCG-GCGC- 361 -A-CG-GG-U GCGU---AAC -GC-GUAUG- CAA--UCU-A C-CUUU---U -ACAU-A-GG 421 -GAU-AG-CC C--------- ------AG-- A(-GAAA-)U -UUGG-A--U UAAUNCC-UN 481 AU-AGU---- ---------- -------A-U GU-G--A-UN ---NUC-(-- --------GC 541 AU-------- -)-GGU---U UU-CN----C AU--UAAA-- ---GU----- ---------- 601 --(------- ---ACCA--- ---)------ ---------| -----A--C- G--GUA---- 661 ----AAAG-- AUG---A-|G CAUGC----- -GU|----CC C--AUUA-G- CUA-G---AU 721 GG-UA-AG-( GU-AAC-GG) -C-UUACN-A U|-GGC-UN- CGA------- -----UG-GG 781 U-AG-G-GG| -U-CCU--(G -AGA)-GGGA ----GA-U-- CCC-N|C-AC -ACUGG-U-A 841 (CUGA-GA-C ACG)--GACC -AGN-C-UCC -(UACG)--G GAG-GC-AG- C-A---NU-G 901 AGG-AAUAUU G-GACAAU-- GG-GC-(GCA A)-GCC-UNA UCCA|-GCCA UGCC-GC-GU 961 G-C-AG-G-A U-GAC--G-G UC(C-UA-U- -G)GA-UUGU AAA--CUNC| UUUU-GU-AC 1021 --AG-GAA-- GA-AACA-CU --UCU-N--( -----CGAG- ---------) --UA-GA-AG 1081 ---------- -------C-U U-GA-CGGU- A-CUG-U-AA G-AA--UAAG ---------G 1141 -AUCGGCU-A ACUCC-GUG( CCA--GCNNN NNCNNNN-A) U-A-C-GGAG |-NAUC-C-- 1201 UAG-CGUUAU CC-GGAAUCA -UU-GGGU|U UAAA-GGGU- CCG-UAG-GC -G|-GU-UU- 1261 G-AU-AAG|U CAG---UGGU G-AAA-GC-C NA-UCG-C(- UC-A)A-CGA -UG-G-AAC- 1321 -GGCC-AUUG A-UAC-UGUU A-GACUU-GA AUU-----AU U-AG-GAAGU AAC-U|AGAA 1381 UA-UGUAGU- GUA-GCG(-G UGAAA)-UGC -UU-AGAG-A UU-ACAUGG- AAUA-CCAA- 1441 -U-U-GC(-G AA-G)GCAG- -GUUACUA-- ---------- ---------- ---------C 1501 UAA--UG-UA UUGACG-CUN AU-G------ -------GA- C-UAAA-GC- GU-GGG-UA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CU-GU--A 1621 AAC-G-AUGG A--UA-CU-- -------A|G -CU-GU-NGG -GG------- ---------- 1681 -(-GC-AA)- ---------- ---------- ---------- ---------C -UUCAG-UGG 1741 CU--AA---- --GC-(GAA- ---A)G-UG- AUAA-GUAUC C|C|A-CCU- G-GGGAGUAC 1801 GUU-C---(G CAA)---G-A AU-GAAACUC -AAA-GGAAU UG-ACGGG-N -N-C-CC--G 1861 C-U--CA-AU CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGAUA-C G)--CGAGGA 1921 A-CCUUA-CC AAG-GC-UUA AAU-GU|--- -------A-G ---UUUG--- -AC----CGA 1981 -UUU-G--(- GAAA-)-CAG -A-UCNU--- ---------- ---UC----- --(GC----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------A A-)------- GA-------- ---------| CAA-AU-UAC |---A|A--G 2161 GU-GC-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GC-C(-GUG A)-GGUGU-C 2221 AG-G-(UUAA -GU)-CCUAU AA-------- CGAG-C--GC AACCC-CU-G |-UU--GUU- 2281 AG--UUGC-C AU-CGA---- ---------- ---------- ---G(---UG ---AAG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----UUG|G 2701 G-AA-CU-C- U-AAC-AA-G A-CU-G-CCA --GU(-G--U AA)-ACU-GU -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAC-G-GC-C CUUAC-G-CC -UU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGA-C-GG -UA--CAGAG AGC-A-G-C- C--CUA-C(G 2881 -UGA)GUAG- ---------- GA-GCGAA-U CUAC--AAAA -CC-N-UUC- UCAGUUCGGA 2941 U-CGGAGUC- (UGCAAC-U- N)-GACUCCG -UGAAGC-UG -GAAU-CGC- -UAGUA-AUC 3001 GG-AUA-(UC -AGCCAU)-G AUC-CGGUG- AAUAC-GU.. .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS 2.7.1.2.6 4376 bp RNA RNA 09-JAN-1999 DEFINITION 2.7.1.2.6 FLEXIBACTER_SUBGROUP. ACCESSION No information KEYWORDS No information. SOURCE 2.7.1.2.6 FLEXIBACTER_SUBGROUP. ORGANISM 2.7.1.2.6 FLEXIBACTER_SUBGROUP. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 0 a 0 c 0 g 0 t 4376 others ORIGIN 1 x~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~-- ------~~~~ 541 ~~~~~~---- -~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~---~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- 1681 -(~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- -------~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~----~~~ 1981 ~~~~-~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~--- --~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~------ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~